Query 003439
Match_columns 820
No_of_seqs 916 out of 5276
Neff 10.1
Searched_HMMs 29240
Date Tue Mar 26 01:15:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003439.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003439hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.5E-41 5.2E-46 393.5 37.5 481 187-680 62-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.3E-41 4.4E-46 394.2 34.0 498 87-663 61-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 99.9 1.4E-24 4.7E-29 236.6 38.4 370 216-666 6-388 (388)
4 4g26_A Pentatricopeptide repea 99.9 7.6E-27 2.6E-31 259.4 19.7 184 413-598 27-223 (501)
5 4g26_A Pentatricopeptide repea 99.9 5.2E-27 1.8E-31 260.8 17.3 199 164-362 11-227 (501)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1E-23 3.6E-28 229.6 38.5 349 319-680 8-368 (388)
7 2gw1_A Mitochondrial precursor 99.9 1.2E-21 4.2E-26 221.5 30.8 438 211-657 8-489 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 6.5E-21 2.2E-25 211.8 32.9 335 309-676 25-405 (450)
9 2gw1_A Mitochondrial precursor 99.9 4.3E-21 1.5E-25 217.1 29.3 426 245-680 7-478 (514)
10 3fp2_A TPR repeat-containing p 99.9 1.8E-20 6.2E-25 213.3 32.5 426 209-680 25-491 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 3.5E-20 1.2E-24 205.8 30.6 364 276-669 23-443 (450)
12 3fp2_A TPR repeat-containing p 99.8 2.8E-19 9.6E-24 203.4 28.2 437 178-655 25-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 2.4E-17 8.2E-22 176.4 29.5 308 310-663 3-352 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 2.9E-17 9.8E-22 175.8 29.7 293 380-680 2-335 (359)
15 1xi4_A Clathrin heavy chain; a 99.8 2.9E-14 1E-18 167.0 52.7 380 245-672 986-1376(1630)
16 3hym_B Cell division cycle pro 99.8 2.7E-16 9.1E-21 166.2 27.9 285 377-667 18-321 (330)
17 1xi4_A Clathrin heavy chain; a 99.7 1.8E-13 6.1E-18 160.5 52.3 251 393-675 1088-1340(1630)
18 1b89_A Protein (clathrin heavy 99.7 3.7E-16 1.3E-20 165.2 26.5 283 190-542 15-307 (449)
19 1fch_A Peroxisomal targeting s 99.7 4.5E-16 1.6E-20 167.5 24.1 279 391-677 35-356 (368)
20 3hym_B Cell division cycle pro 99.7 1.6E-15 5.5E-20 160.2 27.9 262 410-680 20-299 (330)
21 1b89_A Protein (clathrin heavy 99.7 1.7E-16 5.7E-21 167.8 19.9 354 291-682 15-387 (449)
22 2ooe_A Cleavage stimulation fa 99.7 1.1E-14 3.7E-19 165.1 36.5 410 243-680 12-492 (530)
23 2xm6_A Protein corresponding t 99.7 5.2E-15 1.8E-19 166.0 33.4 351 292-663 56-452 (490)
24 2ooe_A Cleavage stimulation fa 99.7 2.3E-14 8E-19 162.4 35.7 409 207-649 11-495 (530)
25 1fch_A Peroxisomal targeting s 99.7 1.6E-15 5.4E-20 163.2 22.5 276 395-680 15-314 (368)
26 4eqf_A PEX5-related protein; a 99.7 1.5E-15 5.1E-20 163.3 20.2 258 411-676 64-352 (365)
27 4g1t_A Interferon-induced prot 99.7 7.1E-15 2.4E-19 164.1 26.2 362 278-690 50-469 (472)
28 4eqf_A PEX5-related protein; a 99.7 1E-15 3.5E-20 164.6 18.4 231 447-680 64-310 (365)
29 2xm6_A Protein corresponding t 99.7 1.3E-13 4.6E-18 154.5 35.4 352 308-682 37-434 (490)
30 3mkr_A Coatomer subunit epsilo 99.7 1.2E-14 4.3E-19 150.3 24.3 265 393-672 11-286 (291)
31 3spa_A Mtrpol, DNA-directed RN 99.7 5.7E-17 2E-21 184.1 7.1 150 175-324 124-286 (1134)
32 3mkr_A Coatomer subunit epsilo 99.6 6.1E-15 2.1E-19 152.7 21.2 246 419-680 6-264 (291)
33 3cv0_A Peroxisome targeting si 99.6 4.6E-15 1.6E-19 156.4 20.0 257 414-677 23-312 (327)
34 3spa_A Mtrpol, DNA-directed RN 99.6 2.3E-16 7.7E-21 179.3 8.2 132 479-611 123-262 (1134)
35 3cv0_A Peroxisome targeting si 99.6 6.2E-14 2.1E-18 147.7 24.1 264 309-648 20-317 (327)
36 4g1t_A Interferon-induced prot 99.6 4.4E-13 1.5E-17 149.5 28.3 385 209-658 51-471 (472)
37 2pl2_A Hypothetical conserved 99.5 1.8E-13 6.1E-18 135.1 17.2 193 480-677 2-211 (217)
38 3uq3_A Heat shock protein STI1 99.5 2.7E-13 9.1E-18 137.3 18.9 224 413-680 6-236 (258)
39 3uq3_A Heat shock protein STI1 99.5 5.6E-13 1.9E-17 135.0 19.0 240 380-659 4-255 (258)
40 3u4t_A TPR repeat-containing p 99.5 8.2E-13 2.8E-17 135.2 18.8 175 486-665 77-269 (272)
41 1xnf_A Lipoprotein NLPI; TPR, 99.5 6.3E-13 2.2E-17 136.1 17.5 240 425-674 18-269 (275)
42 3e4b_A ALGK; tetratricopeptide 99.4 2E-11 7E-16 134.7 25.1 365 257-676 16-417 (452)
43 2ho1_A Type 4 fimbrial biogene 99.4 6E-12 2E-16 127.1 18.9 195 483-680 37-238 (252)
44 1ouv_A Conserved hypothetical 99.4 3.9E-11 1.3E-15 122.9 24.2 223 411-681 5-252 (273)
45 2vq2_A PILW, putative fimbrial 99.4 1.2E-11 4.1E-16 122.1 19.5 196 482-680 7-211 (225)
46 2q7f_A YRRB protein; TPR, prot 99.4 4.3E-12 1.5E-16 127.2 15.9 195 482-680 22-222 (243)
47 2q7f_A YRRB protein; TPR, prot 99.4 6.2E-12 2.1E-16 126.0 16.7 179 483-664 57-240 (243)
48 2h6f_A Protein farnesyltransfe 99.4 4.1E-12 1.4E-16 136.0 16.1 243 412-663 97-365 (382)
49 2ho1_A Type 4 fimbrial biogene 99.4 3.7E-11 1.3E-15 121.2 22.0 205 412-655 37-247 (252)
50 4a1s_A PINS, partner of inscut 99.4 2.7E-12 9.2E-17 140.2 13.1 260 418-680 54-372 (411)
51 3sf4_A G-protein-signaling mod 99.4 8.8E-12 3E-16 135.5 17.0 262 416-680 13-336 (406)
52 3ro2_A PINS homolog, G-protein 99.4 1.2E-11 4E-16 130.3 17.4 260 418-680 11-332 (338)
53 2h6f_A Protein farnesyltransfe 99.4 1.5E-11 5E-16 131.7 18.0 224 450-680 99-348 (382)
54 3e4b_A ALGK; tetratricopeptide 99.3 2.6E-11 8.9E-16 133.8 20.5 343 316-682 9-389 (452)
55 1ouv_A Conserved hypothetical 99.3 9.4E-11 3.2E-15 120.0 23.2 230 378-652 3-257 (273)
56 2vq2_A PILW, putative fimbrial 99.3 4.8E-11 1.7E-15 117.7 20.3 208 411-657 7-222 (225)
57 3vtx_A MAMA; tetratricopeptide 99.3 2.5E-11 8.4E-16 116.0 17.2 163 514-680 5-170 (184)
58 1xnf_A Lipoprotein NLPI; TPR, 99.3 6.6E-12 2.3E-16 128.5 13.9 219 457-681 14-245 (275)
59 2pl2_A Hypothetical conserved 99.3 3.8E-11 1.3E-15 118.2 17.8 204 411-643 4-211 (217)
60 3u4t_A TPR repeat-containing p 99.3 1.5E-10 5.3E-15 118.1 23.0 241 383-627 5-265 (272)
61 3sf4_A G-protein-signaling mod 99.3 1.4E-11 4.9E-16 133.8 16.1 154 516-669 189-365 (406)
62 4abn_A Tetratricopeptide repea 99.3 7.3E-12 2.5E-16 139.2 12.6 191 481-676 100-317 (474)
63 3vtx_A MAMA; tetratricopeptide 99.2 4.8E-11 1.7E-15 114.0 13.6 167 482-652 4-176 (184)
64 4gyw_A UDP-N-acetylglucosamine 99.2 5.2E-11 1.8E-15 137.7 15.8 160 515-679 10-173 (723)
65 4a1s_A PINS, partner of inscut 99.2 3.4E-11 1.2E-15 131.3 12.2 263 386-648 53-374 (411)
66 2ond_A Cleavage stimulation fa 99.2 1.3E-09 4.4E-14 113.7 23.7 217 429-652 33-276 (308)
67 4e6h_A MRNA 3'-END-processing 99.2 2.9E-08 9.9E-13 113.3 35.9 412 207-652 64-576 (679)
68 3ro2_A PINS homolog, G-protein 99.2 1.5E-10 5.2E-15 121.7 15.4 133 517-649 186-335 (338)
69 3nf1_A KLC 1, kinesin light ch 99.2 4E-11 1.4E-15 125.0 10.6 242 413-679 28-306 (311)
70 3ulq_A Response regulator aspa 99.2 1E-10 3.5E-15 126.4 14.1 222 457-679 112-367 (383)
71 4abn_A Tetratricopeptide repea 99.2 2.4E-10 8.3E-15 126.9 16.3 177 499-680 84-287 (474)
72 4e6h_A MRNA 3'-END-processing 99.2 2.3E-08 8E-13 114.1 32.3 435 224-681 47-571 (679)
73 2ond_A Cleavage stimulation fa 99.2 1.1E-09 3.7E-14 114.3 19.6 211 465-681 33-271 (308)
74 4i17_A Hypothetical protein; T 99.1 9.8E-10 3.4E-14 108.9 17.9 203 448-662 7-225 (228)
75 3ulq_A Response regulator aspa 99.1 2.1E-09 7.3E-14 115.9 22.0 198 451-648 146-370 (383)
76 3as5_A MAMA; tetratricopeptide 99.1 6.7E-10 2.3E-14 105.5 15.2 160 484-679 9-172 (186)
77 4i17_A Hypothetical protein; T 99.1 9E-10 3.1E-14 109.2 16.5 187 482-680 6-209 (228)
78 3as5_A MAMA; tetratricopeptide 99.1 2.2E-09 7.7E-14 101.8 18.4 169 449-653 9-180 (186)
79 1hz4_A MALT regulatory protein 99.1 1.4E-08 4.9E-13 108.9 25.5 258 421-680 23-322 (373)
80 3nf1_A KLC 1, kinesin light ch 99.1 1.9E-10 6.5E-15 119.8 9.1 241 378-649 24-310 (311)
81 3q15_A PSP28, response regulat 99.0 6.5E-08 2.2E-12 104.0 26.0 30 276-305 7-38 (378)
82 3q15_A PSP28, response regulat 99.0 4.4E-09 1.5E-13 113.2 16.6 222 457-679 110-364 (378)
83 1qqe_A Vesicular transport pro 99.0 2.6E-09 8.9E-14 110.4 13.5 186 492-677 46-266 (292)
84 4gyw_A UDP-N-acetylglucosamine 99.0 1.5E-09 5.2E-14 125.4 12.5 163 482-649 8-177 (723)
85 3edt_B KLC 2, kinesin light ch 99.0 2.6E-09 8.8E-14 109.2 11.9 222 459-680 12-281 (283)
86 3qky_A Outer membrane assembly 98.9 1.6E-08 5.3E-13 102.5 16.2 202 482-726 14-247 (261)
87 1qqe_A Vesicular transport pro 98.9 3.3E-08 1.1E-12 102.0 17.1 220 396-654 32-277 (292)
88 4ga2_A E3 SUMO-protein ligase 98.9 2.7E-09 9.4E-14 97.8 7.4 141 521-666 4-149 (150)
89 1hz4_A MALT regulatory protein 98.9 3.3E-07 1.1E-11 98.1 24.8 157 385-541 97-280 (373)
90 3mv2_B Coatomer subunit epsilo 98.8 2.5E-07 8.7E-12 93.7 21.0 174 502-680 85-282 (310)
91 3qou_A Protein YBBN; thioredox 98.8 2.7E-08 9.2E-13 102.3 13.8 163 511-678 114-282 (287)
92 3qky_A Outer membrane assembly 98.8 3.5E-08 1.2E-12 99.9 14.5 201 448-669 15-250 (261)
93 2yhc_A BAMD, UPF0169 lipoprote 98.8 8.2E-08 2.8E-12 94.7 16.5 179 484-682 5-215 (225)
94 3edt_B KLC 2, kinesin light ch 98.8 4.8E-08 1.6E-12 99.6 14.9 165 483-647 85-282 (283)
95 2fo7_A Synthetic consensus TPR 98.8 6.7E-08 2.3E-12 85.8 13.9 128 517-679 4-131 (136)
96 4ga2_A E3 SUMO-protein ligase 98.8 1.1E-08 3.9E-13 93.7 8.4 123 555-680 3-129 (150)
97 2fo7_A Synthetic consensus TPR 98.8 1.2E-07 4E-12 84.2 14.9 123 485-610 3-128 (136)
98 2pzi_A Probable serine/threoni 98.8 1.1E-08 3.9E-13 118.7 9.8 168 494-667 402-584 (681)
99 2r5s_A Uncharacterized protein 98.7 4.2E-08 1.5E-12 92.6 10.9 156 519-679 11-172 (176)
100 3rjv_A Putative SEL1 repeat pr 98.7 3.7E-07 1.3E-11 89.0 15.5 161 513-682 17-199 (212)
101 2vsy_A XCC0866; transferase, g 98.7 1.5E-07 5.1E-12 107.2 14.6 158 496-658 2-169 (568)
102 3urz_A Uncharacterized protein 98.6 2.3E-07 8E-12 90.2 13.5 126 519-650 59-190 (208)
103 2pzi_A Probable serine/threoni 98.6 3.5E-07 1.2E-11 106.2 17.1 188 459-653 402-609 (681)
104 2vgx_A Chaperone SYCD; alterna 98.6 7.7E-08 2.6E-12 87.8 9.1 101 580-680 15-118 (148)
105 3mv2_B Coatomer subunit epsilo 98.6 9.9E-07 3.4E-11 89.4 17.9 180 467-654 85-290 (310)
106 2ifu_A Gamma-SNAP; membrane fu 98.6 2.6E-07 8.8E-12 96.1 13.9 219 425-672 4-253 (307)
107 4gco_A Protein STI-1; structur 98.6 1.8E-07 6E-12 82.7 10.5 94 587-680 15-110 (126)
108 3gyz_A Chaperone protein IPGC; 98.6 8.4E-08 2.9E-12 87.6 8.5 101 580-680 30-133 (151)
109 2vsy_A XCC0866; transferase, g 98.6 4E-07 1.4E-11 103.7 15.3 145 461-611 2-154 (568)
110 4gco_A Protein STI-1; structur 98.6 2.3E-07 7.8E-12 81.9 10.0 114 545-661 8-125 (126)
111 3urz_A Uncharacterized protein 98.6 2.6E-07 9E-12 89.8 11.4 155 520-680 10-186 (208)
112 2ifu_A Gamma-SNAP; membrane fu 98.6 1.9E-07 6.3E-12 97.1 10.8 196 461-678 4-222 (307)
113 3qou_A Protein YBBN; thioredox 98.5 1.1E-06 3.8E-11 90.2 16.0 131 547-680 114-248 (287)
114 2yhc_A BAMD, UPF0169 lipoprote 98.5 1.1E-06 3.8E-11 86.5 15.2 183 450-653 6-220 (225)
115 2r5s_A Uncharacterized protein 98.5 4.8E-07 1.7E-11 85.2 11.8 155 486-645 9-172 (176)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.5 8.9E-07 3.1E-11 86.1 14.1 125 552-681 9-151 (213)
117 3u3w_A Transcriptional activat 98.5 4.1E-06 1.4E-10 86.2 19.5 160 520-679 81-265 (293)
118 2xcb_A PCRH, regulatory protei 98.5 6.4E-07 2.2E-11 80.9 11.7 95 586-680 19-115 (142)
119 2qfc_A PLCR protein; TPR, HTH, 98.5 1.1E-06 3.9E-11 90.4 15.0 163 517-679 78-265 (293)
120 2uy1_A Cleavage stimulation fa 98.5 8.5E-05 2.9E-09 82.1 30.5 366 221-644 6-411 (493)
121 3dra_A Protein farnesyltransfe 98.4 1.5E-05 5.1E-10 81.6 20.8 178 498-679 84-286 (306)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.4 5.3E-06 1.8E-10 80.5 16.8 144 486-650 9-154 (213)
123 3upv_A Heat shock protein STI1 98.4 1.1E-06 3.7E-11 77.4 10.4 95 586-680 5-101 (126)
124 2c2l_A CHIP, carboxy terminus 98.4 2.7E-07 9.2E-12 94.4 7.4 191 482-680 3-199 (281)
125 1na0_A Designed protein CTPR3; 98.4 3.1E-06 1.1E-10 73.6 12.8 114 550-665 10-125 (125)
126 3rjv_A Putative SEL1 repeat pr 98.4 5.9E-06 2E-10 80.4 15.8 172 467-648 5-199 (212)
127 2uy1_A Cleavage stimulation fa 98.4 2.1E-05 7.1E-10 87.0 22.1 101 257-373 7-117 (493)
128 1p5q_A FKBP52, FK506-binding p 98.4 5.8E-07 2E-11 94.6 9.1 126 551-679 149-293 (336)
129 4f3v_A ESX-1 secretion system 98.4 9.4E-07 3.2E-11 88.4 9.9 181 495-680 18-237 (282)
130 2vyi_A SGTA protein; chaperone 98.4 3.1E-06 1.1E-10 74.4 12.5 117 550-668 13-131 (131)
131 3dra_A Protein farnesyltransfe 98.4 3.7E-05 1.3E-09 78.7 21.6 226 426-659 47-301 (306)
132 1a17_A Serine/threonine protei 98.4 3.1E-06 1.1E-10 78.2 12.7 127 551-679 15-145 (166)
133 2lni_A Stress-induced-phosphop 98.4 2.6E-06 8.7E-11 75.3 11.5 114 550-666 17-133 (133)
134 4f3v_A ESX-1 secretion system 98.4 1.8E-06 6E-11 86.4 11.2 135 520-659 108-249 (282)
135 3u3w_A Transcriptional activat 98.3 4.7E-05 1.6E-09 78.1 21.5 158 489-646 81-266 (293)
136 2e2e_A Formate-dependent nitri 98.3 3.3E-06 1.1E-10 79.4 11.4 94 587-680 46-144 (177)
137 2vgx_A Chaperone SYCD; alterna 98.3 9.8E-07 3.4E-11 80.3 6.8 114 537-655 10-127 (148)
138 2qfc_A PLCR protein; TPR, HTH, 98.3 1.9E-05 6.5E-10 81.1 17.0 162 485-646 77-266 (293)
139 3gyz_A Chaperone protein IPGC; 98.3 3E-06 1E-10 77.1 9.4 104 545-651 31-138 (151)
140 3q49_B STIP1 homology and U bo 98.2 6.8E-06 2.3E-10 73.2 11.7 97 584-680 8-106 (137)
141 2kck_A TPR repeat; tetratricop 98.2 4.3E-06 1.5E-10 71.1 9.9 97 585-681 6-107 (112)
142 3sz7_A HSC70 cochaperone (SGT) 98.2 4.1E-06 1.4E-10 77.6 10.3 95 586-680 12-108 (164)
143 1elw_A TPR1-domain of HOP; HOP 98.2 9.6E-06 3.3E-10 69.6 11.9 92 588-679 7-100 (118)
144 3rkv_A Putative peptidylprolyl 98.2 4.9E-06 1.7E-10 76.9 10.5 64 617-680 63-126 (162)
145 2fbn_A 70 kDa peptidylprolyl i 98.2 8.2E-07 2.8E-11 85.4 5.1 170 490-680 11-186 (198)
146 1wao_1 Serine/threonine protei 98.2 6.1E-06 2.1E-10 91.2 12.7 157 517-678 9-195 (477)
147 1hxi_A PEX5, peroxisome target 98.2 2.6E-06 8.7E-11 74.5 7.7 94 587-680 19-114 (121)
148 3gw4_A Uncharacterized protein 98.2 2E-05 6.8E-10 75.6 14.9 152 526-679 4-175 (203)
149 1na0_A Designed protein CTPR3; 98.2 1.3E-05 4.6E-10 69.5 12.4 96 585-680 9-106 (125)
150 2dba_A Smooth muscle cell asso 98.2 1.3E-05 4.5E-10 72.2 12.5 105 551-658 30-140 (148)
151 2lni_A Stress-induced-phosphop 98.2 1E-05 3.4E-10 71.4 11.5 97 584-680 15-113 (133)
152 4gcn_A Protein STI-1; structur 98.2 2.5E-06 8.4E-11 75.3 7.3 94 587-680 10-112 (127)
153 2hr2_A Hypothetical protein; a 98.2 1.4E-06 4.9E-11 78.5 5.7 62 619-680 59-131 (159)
154 2e2e_A Formate-dependent nitri 98.2 7.3E-06 2.5E-10 77.0 10.3 128 524-655 20-153 (177)
155 2dba_A Smooth muscle cell asso 98.2 2.5E-05 8.5E-10 70.4 13.5 90 517-611 31-125 (148)
156 1elw_A TPR1-domain of HOP; HOP 98.1 2.5E-05 8.6E-10 66.9 12.8 110 550-661 5-116 (118)
157 3gw4_A Uncharacterized protein 98.1 1.5E-05 5E-10 76.5 12.3 153 495-647 4-177 (203)
158 2vyi_A SGTA protein; chaperone 98.1 1.6E-05 5.4E-10 69.7 11.6 97 584-680 11-109 (131)
159 2xcb_A PCRH, regulatory protei 98.1 2.7E-06 9.2E-11 76.7 6.2 111 545-658 13-127 (142)
160 1wao_1 Serine/threonine protei 98.1 6E-06 2E-10 91.2 9.7 119 555-676 12-135 (477)
161 2hr2_A Hypothetical protein; a 98.1 5.3E-06 1.8E-10 74.8 6.9 101 554-657 16-142 (159)
162 3upv_A Heat shock protein STI1 98.1 1.5E-05 5.1E-10 69.9 9.8 109 551-661 6-122 (126)
163 3sz7_A HSC70 cochaperone (SGT) 98.1 2E-05 6.8E-10 72.9 10.7 106 550-658 12-120 (164)
164 1a17_A Serine/threonine protei 98.1 3.9E-05 1.3E-09 70.6 12.8 125 517-645 16-145 (166)
165 1elr_A TPR2A-domain of HOP; HO 98.0 2.8E-05 9.5E-10 68.1 10.9 95 586-680 5-108 (131)
166 2xev_A YBGF; tetratricopeptide 98.0 2E-05 6.7E-10 69.3 9.7 90 591-680 8-105 (129)
167 1p5q_A FKBP52, FK506-binding p 98.0 1.8E-05 6.2E-10 83.0 10.6 96 585-680 147-259 (336)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 3E-05 1E-09 85.2 11.8 96 585-680 317-415 (457)
169 2fbn_A 70 kDa peptidylprolyl i 98.0 6E-05 2E-09 72.1 12.7 94 587-680 40-151 (198)
170 2kck_A TPR repeat; tetratricop 98.0 4.6E-05 1.6E-09 64.6 10.6 98 552-651 9-111 (112)
171 3k9i_A BH0479 protein; putativ 97.9 3.9E-06 1.3E-10 72.8 3.5 83 598-680 3-90 (117)
172 3q7a_A Farnesyltransferase alp 97.9 0.00027 9.3E-09 73.0 17.6 178 499-680 105-331 (349)
173 3dss_A Geranylgeranyl transfer 97.9 0.00047 1.6E-08 70.9 19.0 225 423-657 40-315 (331)
174 2c2l_A CHIP, carboxy terminus 97.9 3.4E-05 1.2E-09 78.6 10.2 110 548-660 3-115 (281)
175 3ro3_A PINS homolog, G-protein 97.9 5E-05 1.7E-09 69.2 10.3 128 552-679 12-157 (164)
176 3q49_B STIP1 homology and U bo 97.9 5.3E-05 1.8E-09 67.3 10.1 100 548-649 8-109 (137)
177 3n71_A Histone lysine methyltr 97.9 5.1E-05 1.7E-09 83.2 11.6 125 558-682 318-466 (490)
178 1elr_A TPR2A-domain of HOP; HO 97.9 3.7E-05 1.3E-09 67.3 8.4 108 552-662 7-123 (131)
179 4b4t_Q 26S proteasome regulato 97.9 9.3E-05 3.2E-09 80.6 13.5 163 517-679 58-244 (434)
180 1dce_A Protein (RAB geranylger 97.9 0.0003 1E-08 79.1 17.7 169 497-669 43-244 (567)
181 2xev_A YBGF; tetratricopeptide 97.9 0.00015 5.2E-09 63.4 12.3 101 555-658 8-117 (129)
182 1hxi_A PEX5, peroxisome target 97.8 5E-05 1.7E-09 66.1 8.6 97 552-651 20-119 (121)
183 3q7a_A Farnesyltransferase alp 97.8 0.0022 7.7E-08 66.2 22.0 229 421-658 63-344 (349)
184 1ihg_A Cyclophilin 40; ppiase 97.8 7.9E-05 2.7E-09 79.1 10.8 112 550-680 224-336 (370)
185 4gcn_A Protein STI-1; structur 97.8 0.00016 5.6E-09 63.4 11.1 58 517-576 11-69 (127)
186 1ihg_A Cyclophilin 40; ppiase 97.8 5.9E-05 2E-09 80.1 9.7 136 515-672 224-362 (370)
187 2if4_A ATFKBP42; FKBP-like, al 97.8 2.8E-05 9.6E-10 81.6 6.8 146 515-680 180-328 (338)
188 3dss_A Geranylgeranyl transfer 97.8 0.0014 4.7E-08 67.4 19.1 215 461-680 42-304 (331)
189 3ro3_A PINS homolog, G-protein 97.8 0.00011 3.8E-09 66.9 10.1 131 518-648 13-160 (164)
190 2if4_A ATFKBP42; FKBP-like, al 97.7 5.5E-05 1.9E-09 79.4 8.7 149 483-651 179-333 (338)
191 4b4t_Q 26S proteasome regulato 97.7 0.00023 7.7E-09 77.5 13.9 156 524-679 14-203 (434)
192 2l6j_A TPR repeat-containing p 97.7 6.3E-05 2.2E-09 63.8 7.5 92 584-675 3-102 (111)
193 3rkv_A Putative peptidylprolyl 97.7 4.7E-05 1.6E-09 70.2 7.1 77 585-661 63-142 (162)
194 3k9i_A BH0479 protein; putativ 97.7 4.7E-05 1.6E-09 65.7 6.5 93 562-655 3-99 (117)
195 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 8.1E-05 2.8E-09 81.7 9.8 64 617-680 317-380 (457)
196 3ma5_A Tetratricopeptide repea 97.6 0.00012 4.1E-09 61.1 7.4 65 616-680 6-70 (100)
197 1na3_A Designed protein CTPR2; 97.6 0.00019 6.6E-09 58.1 8.0 81 585-665 9-91 (91)
198 2kat_A Uncharacterized protein 97.5 7.7E-05 2.6E-09 64.0 5.1 78 603-680 3-82 (115)
199 1zu2_A Mitochondrial import re 97.5 3.1E-05 1.1E-09 69.6 2.3 85 597-681 14-121 (158)
200 3n71_A Histone lysine methyltr 97.4 0.00015 5.1E-09 79.5 7.1 115 594-726 318-450 (490)
201 3qwp_A SET and MYND domain-con 97.4 0.0002 6.7E-09 77.3 7.1 114 594-725 296-427 (429)
202 3bee_A Putative YFRE protein; 97.3 0.00075 2.6E-08 55.1 7.8 69 614-682 3-74 (93)
203 2l6j_A TPR repeat-containing p 97.3 0.0011 3.7E-08 55.9 9.0 65 616-680 3-67 (111)
204 1klx_A Cysteine rich protein B 97.2 0.0014 4.7E-08 58.3 9.3 64 616-681 56-127 (138)
205 1zu2_A Mitochondrial import re 97.2 0.00025 8.5E-09 63.7 4.1 102 524-653 12-127 (158)
206 1na3_A Designed protein CTPR2; 97.2 0.0014 4.9E-08 52.7 8.5 64 617-680 9-72 (91)
207 1dce_A Protein (RAB geranylger 97.1 0.0034 1.2E-07 70.4 14.1 150 527-680 42-221 (567)
208 3qww_A SET and MYND domain-con 97.1 0.00024 8.2E-09 76.5 4.3 81 599-679 312-410 (433)
209 3ly7_A Transcriptional activat 97.0 0.0059 2E-07 62.9 13.0 138 510-649 190-342 (372)
210 1klx_A Cysteine rich protein B 97.0 0.0026 8.8E-08 56.5 8.8 113 527-648 8-128 (138)
211 3qww_A SET and MYND domain-con 96.9 0.004 1.4E-07 67.0 11.0 92 563-654 312-424 (433)
212 3mkq_A Coatomer beta'-subunit; 96.8 0.046 1.6E-06 64.5 20.2 115 389-539 660-774 (814)
213 2kc7_A BFR218_protein; tetratr 96.7 0.0029 9.8E-08 52.1 6.9 63 592-654 7-72 (99)
214 1pc2_A Mitochondria fission pr 96.7 0.0059 2E-07 54.1 8.9 91 614-730 29-124 (152)
215 3qwp_A SET and MYND domain-con 96.7 0.0079 2.7E-07 64.7 11.8 98 559-656 297-415 (429)
216 3ma5_A Tetratricopeptide repea 96.6 0.0055 1.9E-07 50.6 7.5 63 513-577 6-69 (100)
217 2kat_A Uncharacterized protein 96.6 0.0029 1E-07 53.8 5.9 59 516-576 21-80 (115)
218 3lvg_A Clathrin heavy chain 1; 96.5 0.0084 2.9E-07 63.0 9.8 393 77-505 52-534 (624)
219 2kc7_A BFR218_protein; tetratr 96.5 0.009 3.1E-07 49.0 8.1 86 555-651 6-95 (99)
220 3lvg_A Clathrin heavy chain 1; 96.2 0.002 7E-08 67.5 3.3 397 176-607 52-534 (624)
221 3u64_A Protein TP_0956; tetrat 96.2 0.01 3.4E-07 58.6 7.6 87 601-687 179-276 (301)
222 3ly7_A Transcriptional activat 96.1 0.031 1.1E-06 57.6 11.5 133 545-681 190-340 (372)
223 3mkq_A Coatomer beta'-subunit; 96.0 0.049 1.7E-06 64.3 14.1 101 288-406 661-761 (814)
224 1wy6_A Hypothetical protein ST 95.7 0.28 9.6E-06 41.7 13.0 138 527-683 20-157 (172)
225 1qsa_A Protein (soluble lytic 95.3 3.9 0.00013 45.7 25.1 252 377-657 68-355 (618)
226 3bee_A Putative YFRE protein; 95.2 0.049 1.7E-06 44.1 7.2 67 583-649 4-75 (93)
227 2v5f_A Prolyl 4-hydroxylase su 95.0 0.099 3.4E-06 43.3 8.5 42 616-657 45-86 (104)
228 1nzn_A CGI-135 protein, fissio 94.5 0.12 4.1E-06 44.0 7.9 66 615-680 33-103 (126)
229 3mkq_B Coatomer subunit alpha; 94.4 0.53 1.8E-05 42.8 12.4 129 491-643 13-141 (177)
230 1pc2_A Mitochondria fission pr 94.4 0.11 3.8E-06 46.0 7.7 37 619-655 73-109 (152)
231 1y8m_A FIS1; mitochondria, unk 93.9 0.73 2.5E-05 39.9 11.4 67 614-680 36-106 (144)
232 3mkq_B Coatomer subunit alpha; 93.5 2.1 7.3E-05 38.7 14.6 128 288-438 14-141 (177)
233 4gns_B Protein CSD3, chitin bi 93.1 0.18 6.1E-06 57.5 8.3 54 625-678 345-398 (754)
234 2v5f_A Prolyl 4-hydroxylase su 92.7 0.55 1.9E-05 38.6 9.0 64 617-680 5-75 (104)
235 3u64_A Protein TP_0956; tetrat 92.1 0.19 6.5E-06 49.6 6.0 70 580-649 191-272 (301)
236 1nzn_A CGI-135 protein, fissio 90.5 1.8 6.1E-05 36.7 9.6 74 583-656 33-113 (126)
237 3o48_A Mitochondria fission 1 88.9 1.1 3.7E-05 38.3 7.0 46 634-679 60-106 (134)
238 1wy6_A Hypothetical protein ST 88.7 9.8 0.00034 32.5 12.4 58 520-578 97-154 (172)
239 4h7y_A Dual specificity protei 87.0 1 3.4E-05 39.4 5.7 52 631-682 74-125 (161)
240 2qx5_A Nucleoporin NIC96; mRNA 86.4 46 0.0016 37.2 21.1 40 183-222 157-199 (661)
241 4h7y_A Dual specificity protei 81.5 11 0.00037 33.0 9.7 68 408-477 9-89 (161)
242 2p58_C Putative type III secre 81.2 6.9 0.00024 31.2 7.6 84 464-552 23-106 (116)
243 1qsa_A Protein (soluble lytic 80.4 77 0.0026 35.2 37.9 251 179-440 73-347 (618)
244 2wpv_A GET4, UPF0363 protein Y 80.3 50 0.0017 33.0 19.6 135 280-425 34-178 (312)
245 3ffl_A Anaphase-promoting comp 79.8 12 0.00041 33.3 9.7 56 522-577 28-91 (167)
246 4gns_B Protein CSD3, chitin bi 79.7 16 0.00055 41.6 13.4 51 523-575 346-397 (754)
247 2uwj_G Type III export protein 79.5 6.6 0.00022 31.3 6.9 84 464-552 22-105 (115)
248 3ffl_A Anaphase-promoting comp 79.4 14 0.00047 32.9 10.0 69 543-611 12-89 (167)
249 2wpv_A GET4, UPF0363 protein Y 79.3 54 0.0018 32.7 18.8 169 383-578 35-217 (312)
250 1v54_E Cytochrome C oxidase po 78.3 12 0.0004 30.1 8.1 63 529-593 25-87 (109)
251 1y8m_A FIS1; mitochondria, unk 77.8 22 0.00076 30.7 10.5 34 621-654 81-114 (144)
252 4b4t_P 26S proteasome regulato 77.7 76 0.0026 33.6 21.8 94 518-611 141-244 (445)
253 3lpz_A GET4 (YOR164C homolog); 77.7 62 0.0021 32.6 20.3 166 383-577 37-215 (336)
254 4b4t_P 26S proteasome regulato 77.3 64 0.0022 34.2 16.8 93 553-645 141-246 (445)
255 2ff4_A Probable regulatory pro 77.3 3.2 0.00011 43.6 6.4 68 620-687 174-246 (388)
256 2uwj_G Type III export protein 76.8 17 0.0006 28.9 8.6 78 259-340 21-98 (115)
257 3o48_A Mitochondria fission 1 76.6 11 0.00038 32.1 8.2 36 619-654 80-115 (134)
258 2p58_C Putative type III secre 76.1 18 0.00062 28.9 8.5 78 259-340 22-99 (116)
259 2ff4_A Probable regulatory pro 75.1 12 0.00042 39.1 10.2 66 520-587 177-247 (388)
260 3lpz_A GET4 (YOR164C homolog); 74.7 74 0.0025 32.0 20.9 139 180-329 37-186 (336)
261 4ady_A RPN2, 26S proteasome re 73.3 1.4E+02 0.005 34.7 27.8 246 390-644 383-656 (963)
262 2qx5_A Nucleoporin NIC96; mRNA 70.2 42 0.0014 37.6 13.3 80 418-509 300-382 (661)
263 4fhn_B Nucleoporin NUP120; pro 70.2 41 0.0014 40.9 14.6 167 384-569 815-991 (1139)
264 1v54_E Cytochrome C oxidase po 70.0 20 0.00069 28.8 7.5 61 225-286 26-86 (109)
265 4ady_A RPN2, 26S proteasome re 69.9 1.7E+02 0.0059 34.1 29.0 24 181-204 233-256 (963)
266 3txn_A 26S proteasome regulato 69.6 87 0.003 32.5 14.9 56 555-610 105-164 (394)
267 4fhn_B Nucleoporin NUP120; pro 68.1 81 0.0028 38.2 16.6 142 453-603 817-989 (1139)
268 1wdy_A 2-5A-dependent ribonucl 68.0 87 0.003 30.0 17.1 49 459-507 190-240 (285)
269 2y69_E Cytochrome C oxidase su 67.1 26 0.0009 29.8 8.1 62 530-593 69-130 (152)
270 1zbp_A Hypothetical protein VP 61.2 67 0.0023 31.1 11.0 122 523-652 6-135 (273)
271 2l0z_A Glycoprotein G2; zinc-b 60.4 2.9 9.7E-05 26.7 0.9 13 807-819 16-29 (42)
272 2hgo_A CASSIICOLIN; toxin, dis 58.8 1.8 6E-05 23.8 -0.2 13 808-820 8-22 (27)
273 3ljn_A Hypothetical protein; a 57.8 45 0.0015 34.0 10.4 89 42-135 13-106 (364)
274 1zbp_A Hypothetical protein VP 57.4 23 0.00078 34.4 7.1 57 594-650 6-64 (273)
275 2y69_E Cytochrome C oxidase su 55.1 45 0.0015 28.4 7.4 59 227-286 71-129 (152)
276 3esl_A Checkpoint serine/threo 53.6 63 0.0022 29.7 9.0 103 602-730 61-169 (202)
277 4b4t_R RPN7, 26S proteasome re 51.7 1.4E+02 0.0048 31.3 13.1 96 516-611 133-234 (429)
278 3eiq_C Programmed cell death p 50.2 86 0.0029 32.0 10.4 72 282-353 220-296 (358)
279 1n11_A Ankyrin; clathrin, BAND 50.1 2.4E+02 0.0081 29.3 19.2 112 186-305 19-136 (437)
280 3ltj_A Alpharep-4; protein eng 47.3 1.6E+02 0.0055 26.5 18.3 142 175-324 25-166 (201)
281 1k1a_A B-cell lymphoma 3-encod 44.8 1.6E+02 0.0054 27.3 11.4 26 218-243 15-40 (241)
282 1wdy_A 2-5A-dependent ribonucl 44.2 2.1E+02 0.0073 27.1 14.9 14 596-609 227-240 (285)
283 2k0q_A Putative uncharacterize 44.0 7.7 0.00026 28.3 1.0 20 796-815 8-27 (74)
284 4b4t_R RPN7, 26S proteasome re 44.0 39 0.0013 35.7 7.2 61 551-611 133-194 (429)
285 3kea_A K1L; tropism, ANK repea 42.3 2E+02 0.0068 27.8 11.9 48 184-231 132-180 (285)
286 3esl_A Checkpoint serine/threo 42.1 89 0.003 28.7 8.1 61 464-524 95-156 (202)
287 2nsz_A Programmed cell death p 42.1 1.1E+02 0.0037 25.9 8.3 65 282-346 10-79 (129)
288 1k1a_A B-cell lymphoma 3-encod 41.5 2.1E+02 0.0073 26.3 14.2 23 321-343 17-39 (241)
289 4a1g_A Mitotic checkpoint seri 39.8 1.2E+02 0.0042 26.4 8.3 77 602-684 52-134 (152)
290 3hra_A Ankyrin repeat family p 39.0 1.2E+02 0.004 27.3 9.0 150 188-345 12-173 (201)
291 3ltj_A Alpharep-4; protein eng 38.7 2.2E+02 0.0074 25.5 18.8 48 278-325 27-74 (201)
292 1qc6_A EVH1 domain from ENA/VA 38.3 8.5 0.00029 32.9 0.7 40 768-815 44-87 (130)
293 3kea_A K1L; tropism, ANK repea 37.9 1.6E+02 0.0054 28.6 10.3 55 592-647 133-188 (285)
294 3jxi_A Vanilloid receptor-rela 37.7 1.3E+02 0.0044 28.5 9.5 90 216-305 9-116 (260)
295 3ltm_A Alpha-REP4; protein eng 37.5 2.3E+02 0.008 25.6 18.4 49 379-427 93-141 (211)
296 3mv2_A Coatomer subunit alpha; 36.8 1.4E+02 0.0047 29.8 9.1 60 607-680 195-256 (325)
297 4a1g_A Mitotic checkpoint seri 36.2 1.3E+02 0.0044 26.3 7.8 54 467-520 84-138 (152)
298 1oyz_A Hypothetical protein YI 35.4 3E+02 0.01 26.2 18.2 240 175-460 34-279 (280)
299 1n11_A Ankyrin; clathrin, BAND 35.2 3.9E+02 0.013 27.5 17.5 55 285-344 17-74 (437)
300 3jxi_A Vanilloid receptor-rela 34.9 1.5E+02 0.005 28.1 9.4 52 319-370 11-71 (260)
301 2wvi_A Mitotic checkpoint seri 34.7 1.5E+02 0.0052 26.2 8.2 77 602-684 47-129 (164)
302 2ion_A PDCD4, programmed cell 34.6 97 0.0033 27.1 7.0 65 282-346 12-81 (152)
303 3ljn_A Hypothetical protein; a 34.4 3.3E+02 0.011 27.2 12.6 15 494-508 181-195 (364)
304 2lo3_A SAGA-associated factor 34.2 9.9 0.00034 24.5 0.3 13 775-787 15-27 (44)
305 2zu6_B Programmed cell death p 32.5 3.2E+02 0.011 27.0 11.3 28 384-411 6-33 (307)
306 3eiq_C Programmed cell death p 30.5 3.4E+02 0.012 27.5 11.2 28 282-309 57-84 (358)
307 3eu9_A Huntingtin-interacting 29.4 1.8E+02 0.006 26.8 8.8 14 392-405 185-198 (240)
308 2nsz_A Programmed cell death p 29.2 1E+02 0.0034 26.0 6.0 62 82-144 10-76 (129)
309 3bqo_A Telomeric repeat-bindin 27.9 2.4E+02 0.0081 25.7 8.1 59 601-659 94-159 (211)
310 2d2s_A Exocyst complex compone 26.2 2.1E+02 0.0073 27.0 8.3 29 582-610 88-116 (235)
311 2zu6_B Programmed cell death p 25.7 2.3E+02 0.0079 28.0 8.8 28 282-309 6-33 (307)
312 3b7b_A Euchromatic histone-lys 25.2 3.9E+02 0.013 24.3 11.7 15 391-405 84-98 (237)
313 4gq2_M Nucleoporin NUP120; bet 24.3 4.6E+02 0.016 30.7 12.6 27 619-645 899-925 (950)
314 3ltm_A Alpha-REP4; protein eng 23.6 4E+02 0.014 23.9 18.5 62 378-440 123-184 (211)
315 3txn_A 26S proteasome regulato 22.3 6.5E+02 0.022 25.8 21.8 26 383-408 21-46 (394)
316 4b4t_S RPN3, 26S proteasome re 21.8 2E+02 0.0069 30.8 7.8 60 550-611 232-296 (523)
317 3eu9_A Huntingtin-interacting 21.5 4.5E+02 0.016 23.7 11.1 15 559-573 217-231 (240)
318 1j0t_A MIH, MOLT-inhibiting ho 21.0 13 0.00044 28.2 -1.1 14 775-788 20-33 (78)
319 2ion_A PDCD4, programmed cell 21.0 1.1E+02 0.0036 26.8 4.6 62 82-144 12-78 (152)
320 4aez_C MAD3, mitotic spindle c 20.8 1.4E+02 0.0049 27.9 5.7 76 602-683 101-182 (223)
321 3hra_A Ankyrin repeat family p 20.5 4.4E+02 0.015 23.2 13.2 17 391-407 12-28 (201)
322 3tjy_A Effector protein hopab3 20.2 2.9E+02 0.01 21.0 7.1 68 114-191 8-76 (94)
323 4gq2_M Nucleoporin NUP120; bet 20.1 7.2E+02 0.025 29.1 13.1 126 387-528 816-950 (950)
324 2pnn_A Transient receptor pote 20.0 2.9E+02 0.0099 26.2 8.4 188 213-405 14-254 (273)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-41 Score=393.51 Aligned_cols=481 Identities=9% Similarity=-0.043 Sum_probs=400.2
Q ss_pred HhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHH
Q 003439 187 MYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLI 266 (820)
Q Consensus 187 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 266 (820)
.+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..||..++..++.+|...|++++|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 356778889999999999999999999999999999999999999999984 568889999999999999999999999
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCC-------------------CchHHHHHHHHHHhCCChh
Q 003439 267 HLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER-------------------DVVSWNSIIAAYEQSNDPI 327 (820)
Q Consensus 267 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-------------------d~~~~~~li~~~~~~g~~~ 327 (820)
++.+... +++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9987643 678899999999999999999999999965433 4789999999999999999
Q ss_pred hHHHHHHHHHHcCCCCCcchH-HHHHHHHHhcCcch--hhhhH-HHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHH
Q 003439 328 TAHGFFTTMQQAGIQPDLLTL-VSLTSIVAQLNDCR--NSRSV-HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAV 403 (820)
Q Consensus 328 ~A~~~~~~m~~~g~~pd~~t~-~~ll~a~~~~~~~~--~a~~i-~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~ 403 (820)
+|+++|++|.+.+ |+..+. ..+...+...+..+ ....+ +..+...+ ......+++.++.+|.+.|++++|.++
T Consensus 218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED-AAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG-HHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccch-HHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 9999999998853 554433 33332222221111 11111 34444444 555667788889999999999999999
Q ss_pred HhcCCC--CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCC
Q 003439 404 FEGLPV--KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 481 (820)
Q Consensus 404 f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 481 (820)
|+++.+ ++..+|+.++.+|.+.|++++|+++|+++.+ .+ +.+..++..++.++.+.|++++|.++++.+.+.. +.
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE-ID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-cC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 999987 7999999999999999999999999999987 33 2367789999999999999999999999998764 45
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA 558 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 558 (820)
+..+++.++.+|.++|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..++..++.+
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 78899999999999999999999999875 5667899999999999999999999999999853 3467899999999
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHh
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-------PVRPD--ASIWGALLGACRI 629 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-------~~~p~--~~~~~~ll~~~~~ 629 (820)
|.+.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999864 2346789999999999999999999999988 44787 7799999999999
Q ss_pred cCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 630 HGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 630 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.|++++|+..++++++++|+++..|..++++|.+.|++++|.++++++.+.
T Consensus 529 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999876
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-41 Score=394.18 Aligned_cols=498 Identities=10% Similarity=-0.038 Sum_probs=349.6
Q ss_pred HHHHccCChHHHHHHhcccCCCCcchHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCccccHHHHHhhcCCcc---hH
Q 003439 87 NFYANLGDLSFSRHTFDHISYRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVD---GK 163 (820)
Q Consensus 87 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---~~ 163 (820)
..+.+.|.+..++..|+.++.+++..|+.++..|.+.|++++|+.+|++ |. +..|+..++..+..+|...++ |.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~-~~--~~~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEK-VL--DITGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHH-HH--HHHCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHH-HH--hhCCCchHHHHHHHHHHHcCcHHHHH
Confidence 3456778888888889988888899999999999999999999999998 54 355777888888888877777 66
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCCCC-------------------CcccHHHHHHHHHhCCC
Q 003439 164 KIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMPVR-------------------DSGSWNAMISGYCQSGN 224 (820)
Q Consensus 164 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-------------------~~~~~~~li~~~~~~g~ 224 (820)
.++..+.. .++++.+++.++.+|.++|++++|+++|+++... +..+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 66665543 3788999999999999999999999999964433 47899999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCC-hHHHHhHHHhhhcCCChHH--HHHH-HHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHH
Q 003439 225 AVEALDILDEMRLEGVSMD-PITVASILPVCARSDNILS--GLLI-HLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALR 300 (820)
Q Consensus 225 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 300 (820)
+++|+++|++|.+.+ |+ ...+..+...+...+..+. +..+ +..+...+..+...+++.++.+|.+.|++++|.+
T Consensus 216 ~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 216 FDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 999999999998754 44 3444444444433322221 1111 4444555555566778888999999999999999
Q ss_pred HHhccCC--CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcC
Q 003439 301 VFDQMME--RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFM 378 (820)
Q Consensus 301 ~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 378 (820)
+|+++.+ ++..+|+.++.+|.+.|++++|+++|++|.+.+. .+..++..++.++...|+.+.|..++..+.+.. +
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~ 370 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH--P 370 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--c
Confidence 9999988 7899999999999999999999999999987531 133444444444444444444444444433221 2
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHh
Q 003439 379 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAY 458 (820)
Q Consensus 379 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~ 458 (820)
. +..+|+.++..|.+.|++++|.++|+++.+ ..|
T Consensus 371 ~-------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------------ 404 (597)
T 2xpi_A 371 E-------------------------------KAVTWLAVGIYYLCVNKISEARRYFSKSST---MDP------------ 404 (597)
T ss_dssp T-------------------------------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCT------------
T ss_pred c-------------------------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCC------------
Confidence 2 333444444444444444444444444433 111
Q ss_pred hccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHH
Q 003439 459 SHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALN 535 (820)
Q Consensus 459 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 535 (820)
.+..+++.++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|++
T Consensus 405 ----------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 405 ----------------------QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 234455555556666666666666665543 3455667777777778888888888
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhh---CCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHh
Q 003439 536 FFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEF---GIKPH--LKHYGCMVDLFGRAGHLGMAHNFIQN 610 (820)
Q Consensus 536 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---g~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~ 610 (820)
+|++|.+.. +.+..+|..++.+|.+.|++++|.++|+.+.+.. +..|+ ..+|..++.+|.+.|++++|.+.+++
T Consensus 463 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 463 YLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 888888752 3356788888888899999999999988887543 56777 67999999999999999999999988
Q ss_pred C-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh
Q 003439 611 M-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 663 (820)
Q Consensus 611 m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 663 (820)
+ ...| +..+|..+..+|...|++++|...++++++++|+++..+..|+++|..
T Consensus 542 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 7 3344 788999999999999999999999999999999999999999998864
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.4e-24 Score=236.58 Aligned_cols=370 Identities=14% Similarity=0.174 Sum_probs=251.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCh-HHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCC
Q 003439 216 ISGYCQSGNAVEALDILDEMRLEGVSMDP-ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM 294 (820)
Q Consensus 216 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 294 (820)
...+.+.|++++|++.++++.+. .|+. ..+..+...+...|++++|...+...++.. +.+...+..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34456677777777777766553 2332 333334444555566666666665555543 3345556666666666666
Q ss_pred HHHHHHHHhccCC--C-CchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHH
Q 003439 295 MRHALRVFDQMME--R-DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFI 371 (820)
Q Consensus 295 ~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~ 371 (820)
+++|...|+++.+ | +..+|..+...+.+.|++++|++.|+++.+.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------------------- 130 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY-------------------------------- 130 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--------------------------------
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------------
Confidence 6666666655532 2 3334555666666666666666666555442
Q ss_pred HHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCc
Q 003439 372 MRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ 448 (820)
Q Consensus 372 ~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~ 448 (820)
. +.+..++..+...|.+.|++++|.+.|+++. ..+..+|+.+...|.+.|++++|+..|+++.+ ..|+
T Consensus 131 ---~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~- 201 (388)
T 1w3b_A 131 ---N--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT---LDPN- 201 (388)
T ss_dssp ---C--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTT-
T ss_pred ---C--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCC-
Confidence 1 2233334444555555555555555555442 22345566666666666666666666666655 2232
Q ss_pred ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHH
Q 003439 449 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHG 525 (820)
Q Consensus 449 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 525 (820)
+...+..+...+...|++++|...|++.. +.+...|..+...|.
T Consensus 202 ---------------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 202 ---------------------------------FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY 248 (388)
T ss_dssp ---------------------------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ---------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence 33455556666667777777777766544 345566778888888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHH
Q 003439 526 IHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMA 604 (820)
Q Consensus 526 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA 604 (820)
..|++++|++.|+++.+ ..|+ ..++..+..++...|++++|.+.|+.+.+. .+.+...+..+..+|.+.|++++|
T Consensus 249 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHH
Confidence 88999999999999988 4565 468888999999999999999999999864 345678899999999999999999
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCC
Q 003439 605 HNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 666 (820)
Q Consensus 605 ~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 666 (820)
.+.++++ ...|+ ..+|..+...+.+.|++++|+..++++++++|+++..+..++.+|...|+
T Consensus 325 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999987 44554 66999999999999999999999999999999999999999999887764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=7.6e-27 Score=259.43 Aligned_cols=184 Identities=14% Similarity=0.152 Sum_probs=170.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCC---------hhHHHHHHHHHHHhCCCCch
Q 003439 413 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA---------LRQGIKIHARVIKNCLCFDV 483 (820)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~---------~~~a~~i~~~~~~~g~~~~~ 483 (820)
..++.+|.+|++.|+.++|+++|++|.+ .|+.||.+||+++|.+|+..+. ++.|.++|+.|.+.|+.||.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 4578889999999999999999999998 9999999999999999987654 67899999999999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003439 484 FVATCLVDMYGKCGRIDDAMSLFYQVP----RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 559 (820)
Q Consensus 484 ~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 559 (820)
.+||+||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999987 6789999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHc
Q 003439 560 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA 598 (820)
Q Consensus 560 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 598 (820)
++.|++++|.+++++|.+. |..|+..+|+.+++.|.+.
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999876 9999999999999998764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=5.2e-27 Score=260.76 Aligned_cols=199 Identities=11% Similarity=0.068 Sum_probs=146.6
Q ss_pred HHHHHHHHhCCCCcH-HHHHHHHHHhhcCCChhHHHHHhccCC----CCCcccHHHHHHHHHhCCC---------hhHHH
Q 003439 164 KIHCSVLKLGFEWDV-FVAASLLHMYCRFGLANVARKLFDDMP----VRDSGSWNAMISGYCQSGN---------AVEAL 229 (820)
Q Consensus 164 ~~~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~---------~~~A~ 229 (820)
.+...+.+.+..+.+ .+++.+|++|+|.|++++|.++|++|. .||.++||+||.+|++.+. .++|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 333444444444332 346666777777777777777777775 4677777777777765544 57788
Q ss_pred HHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccC---
Q 003439 230 DILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMM--- 306 (820)
Q Consensus 230 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--- 306 (820)
++|++|.+.|+.||..||+++|.+|++.|++++|.++++.|.+.|+.||..+||+||.+|++.|++++|.++|++|.
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888884
Q ss_pred -CCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcch
Q 003439 307 -ERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCR 362 (820)
Q Consensus 307 -~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 362 (820)
.||..+|++||.+|++.|+.++|.++|++|++.|+.|+..||+.++..++..+...
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a~~ 227 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATK 227 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHHHT
T ss_pred CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcchh
Confidence 37888888888888888888888888888888888888888888888777654433
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=1e-23 Score=229.59 Aligned_cols=349 Identities=15% Similarity=0.096 Sum_probs=283.0
Q ss_pred HHHhCCChhhHHHHHHHHHHcCCCCCcc-hHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCH
Q 003439 319 AYEQSNDPITAHGFFTTMQQAGIQPDLL-TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 397 (820)
Q Consensus 319 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~ 397 (820)
.+.+.|++++|++.++++.+. .|+.. .+..+...+...|+.+.+...+..+++. .+.+...+..+...|.+.|++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCH
Confidence 344455555555555554443 23322 2333333444455555555555555554 366777888889999999999
Q ss_pred HHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCccc-HhhHHHHhhccCChhHHHHHHHH
Q 003439 398 NSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT-YVSILPAYSHVGALRQGIKIHAR 473 (820)
Q Consensus 398 ~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~~~ll~a~~~~~~~~~a~~i~~~ 473 (820)
++|...|+++. ..+..+|..+...+.+.|++++|++.|+++.+ ..|+... +..+...+...|++++|.+.+..
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ---YNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH---HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999998764 33566799999999999999999999999987 5677654 45566678888999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-h
Q 003439 474 VIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-H 549 (820)
Q Consensus 474 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~ 549 (820)
+++.. +.+..++..+...|.+.|++++|...|+++. +.+...|..+...+...|++++|+..|++..+ +.|+ .
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCH
Confidence 98875 3357789999999999999999999999886 44566789999999999999999999999998 4675 5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 003439 550 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-P-VRPDASIWGALLGA 626 (820)
Q Consensus 550 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~-~~p~~~~~~~ll~~ 626 (820)
.++..+..++...|++++|.+.|+.+.+. .| +...|..+..+|.+.|++++|.+.++++ . .+++..+|..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 68889999999999999999999999853 45 4678999999999999999999999987 2 34467799999999
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 627 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 627 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+...|++++|+..+++++++.|++...+..++.+|.+.|++++|...++++.+.
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999864
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.2e-21 Score=221.52 Aligned_cols=438 Identities=9% Similarity=-0.042 Sum_probs=260.8
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Q 003439 211 SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYA 290 (820)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 290 (820)
.|......+.+.|++++|+..|+++.+.. ||..+|..+..++...|++++|...+..+++.. +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45556667777777777777777777654 577777777777777777777777777777665 335566777777777
Q ss_pred ccCCHHHHHHHHhccCC---CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhH
Q 003439 291 KFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 367 (820)
Q Consensus 291 ~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i 367 (820)
+.|++++|...|+.+.. .+......++..+........+.+.+..+...+..|+...+..-...............+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 77777777777766533 223333333333333322223333332222222222211111100000000000000001
Q ss_pred HHHHHHhCC--------cCcchhHHhHHHHHHHh---cCCHHHHHHHHhcCCC-----------------CCchHHHHHH
Q 003439 368 HGFIMRRGW--------FMEDVIIGNAVVDMYAK---LGIINSACAVFEGLPV-----------------KDVISWNTLI 419 (820)
Q Consensus 368 ~~~~~~~g~--------~~~~~~~~~~li~~y~~---~g~~~~A~~~f~~~~~-----------------~~~~~~~~li 419 (820)
...+..... .+.+...+..+...+.. .|++++|...|+.+.. .+...|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 000000000 01223333334443443 6777777777765433 1245666777
Q ss_pred HHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 003439 420 TGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRI 499 (820)
Q Consensus 420 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 499 (820)
..+...|++++|+..|+++.. ..|+...+..+...+...|+++.|...++.+.+... .+..++..+...|.+.|++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIE---LFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHCCCHHHHHHHHHHHHh---hCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCH
Confidence 777788888888888887776 334455566667777777888888888777776542 3456677777777888888
Q ss_pred HHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003439 500 DDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMM 575 (820)
Q Consensus 500 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 575 (820)
++|...|++.. +.+...|..+...|...|++++|+..|+++.+. .| +..++..+...+...|++++|.+.++.+
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88887777654 345556777777777788888888888877774 34 4456777777777788888888877777
Q ss_pred HHhhCCCCC----hhHHHHHHHHHHH---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003439 576 QEEFGIKPH----LKHYGCMVDLFGR---AGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEV 646 (820)
Q Consensus 576 ~~~~g~~p~----~~~~~~li~~~~~---~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 646 (820)
.+...-.++ ...+..+...|.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|...+++++++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 654322222 3367777777777 78888887777765 2233 4557777777777888888888888888887
Q ss_pred CCCCcchHHhH
Q 003439 647 DSENVGYYVLM 657 (820)
Q Consensus 647 ~p~~~~~~~~l 657 (820)
.|+++..+..+
T Consensus 479 ~~~~~~~~~~~ 489 (514)
T 2gw1_A 479 ARTMEEKLQAI 489 (514)
T ss_dssp CSSHHHHHHHH
T ss_pred ccccHHHHHHH
Confidence 77766665544
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=6.5e-21 Score=211.80 Aligned_cols=335 Identities=12% Similarity=0.106 Sum_probs=236.2
Q ss_pred CchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHH
Q 003439 309 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 388 (820)
Q Consensus 309 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li 388 (820)
+...|..+...|.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|...+..+++.+ +.+..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHH
Confidence 45567777788888888888888888876641 2234444444555555555555555555554443 33344445555
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCC---c---hHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccC
Q 003439 389 DMYAKLGIINSACAVFEGLPVKD---V---ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVG 462 (820)
Q Consensus 389 ~~y~~~g~~~~A~~~f~~~~~~~---~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~ 462 (820)
.+|.+.|++++|...|+.+...+ . ..|..++..+...+ +..+...+...|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------~~~~a~~~~~~~ 157 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR------------------------LRSQALNAFGSG 157 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH------------------------HHHHHHHHHHcC
Confidence 55555555555555554443221 1 33333333211100 111122355667
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHH
Q 003439 463 ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQ 539 (820)
Q Consensus 463 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 539 (820)
++++|...++.+.+.. +.+..++..+..+|.+.|++++|.+.|+++. +.+...|..+...|...|++++|+..|++
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777777776654 2366778888889999999999999988875 56677899999999999999999999999
Q ss_pred HHHcCCCCChh-HHHHH------------HHHHHhcCCHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHHHcCCH
Q 003439 540 MLDEGVRPDHI-TFVSL------------LTACSHSGLVSEGQRYFHMMQEEFGIKPH-----LKHYGCMVDLFGRAGHL 601 (820)
Q Consensus 540 m~~~g~~p~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~g~~p~-----~~~~~~li~~~~~~g~~ 601 (820)
+.+ ..|+.. .+..+ ..+|.+.|++++|.++|+.+.+. .|+ ..++..++.+|.+.|++
T Consensus 237 ~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 237 CLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCH
Confidence 987 466654 34333 78899999999999999999864 454 45889999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHH------------HHhhhcC--
Q 003439 602 GMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS------------NIYANVG-- 665 (820)
Q Consensus 602 ~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~y~~~g-- 665 (820)
++|.+.++++ ...| +..+|..+..+|...|++++|+..++++++++|+++..+..++ +.|...|
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 9999999987 4445 5789999999999999999999999999999999999999998 6677777
Q ss_pred ---CcchHHHHHHH
Q 003439 666 ---KWEGVDEVRSL 676 (820)
Q Consensus 666 ---~~~~A~~~~~~ 676 (820)
+.+++.+.+++
T Consensus 392 ~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 392 RNAKKQEIIKAYRK 405 (450)
T ss_dssp TTCCTTHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 44455665554
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4.3e-21 Score=217.06 Aligned_cols=426 Identities=8% Similarity=-0.054 Sum_probs=320.4
Q ss_pred HHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC---CCchHHHHHHHHHH
Q 003439 245 ITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYE 321 (820)
Q Consensus 245 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~ 321 (820)
..+......+...|++++|...+..+++.. |+..++..+..+|.+.|++++|...|+.+.+ .+..+|..+...|.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 345556677888999999999999999986 6899999999999999999999999998754 35678999999999
Q ss_pred hCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhH---HHHHHHhcCCHH
Q 003439 322 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNA---VVDMYAKLGIIN 398 (820)
Q Consensus 322 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~---li~~y~~~g~~~ 398 (820)
+.|++++|+..|+++...+. ++......++..+........+.+.++.+.+.+ ..++....+. ............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTAT-ATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCCCHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999988753 455555555555544444444444333222221 0000000000 000011111112
Q ss_pred HHHHHHhcCC---------CC-CchHHHHHHHHHHH---cCChHHHHHHHHhhhh-----cCCC-------CCCcccHhh
Q 003439 399 SACAVFEGLP---------VK-DVISWNTLITGYAQ---NGLASEAIEVFQMMEE-----CNEI-------NPNQGTYVS 453 (820)
Q Consensus 399 ~A~~~f~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~~g~-------~pd~~t~~~ 453 (820)
.+...+.... .+ +...|......+.. .|++++|+..|+++.. .... ..+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 2222222221 11 23445445554554 8999999999999876 1111 113456677
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCCh
Q 003439 454 ILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQG 530 (820)
Q Consensus 454 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 530 (820)
+...+...|+++.|..+++.+.+.... ...+..+...|...|++++|...|+++. +.+...|..+...|...|++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 788899999999999999999987654 8888999999999999999999998865 44566789999999999999
Q ss_pred HHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 003439 531 DKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 609 (820)
Q Consensus 531 ~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 609 (820)
++|+..|+++.+. .| +..++..+...+...|++++|.++++.+.+. .+.+...+..+...|.+.|++++|.+.++
T Consensus 321 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 321 DQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp THHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999984 45 4568888999999999999999999998864 22356788999999999999999999998
Q ss_pred hC----CCCCC----HHHHHHHHHHHHh---cCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHH
Q 003439 610 NM----PVRPD----ASIWGALLGACRI---HGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 610 ~m----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 678 (820)
++ +..|+ ..+|..+...+.. .|++++|+..+++++++.|+++..+..++.+|...|++++|...++++.
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 87 22232 3489999999999 9999999999999999999999999999999999999999999999988
Q ss_pred hC
Q 003439 679 DR 680 (820)
Q Consensus 679 ~~ 680 (820)
+.
T Consensus 477 ~~ 478 (514)
T 2gw1_A 477 DL 478 (514)
T ss_dssp HH
T ss_pred Hh
Confidence 76
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=1.8e-20 Score=213.29 Aligned_cols=426 Identities=9% Similarity=-0.020 Sum_probs=277.2
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHH
Q 003439 209 SGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINM 288 (820)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 288 (820)
...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.+..+++.. +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3456777778888888888888888887653 2356677777777777788888888888777765 3466777788888
Q ss_pred HHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHH
Q 003439 289 YAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVH 368 (820)
Q Consensus 289 y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 368 (820)
|...|++++|...|+.+ ..+....+..+..+...+...+|+..++++.... |+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~------------------------ 155 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EG------------------------ 155 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC------------------------------
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--cc------------------------
Confidence 88888888888888644 2222233333445555556677777777774321 10
Q ss_pred HHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCch---HHHHHHHHHHH--------cCChHHHHHHHHh
Q 003439 369 GFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVI---SWNTLITGYAQ--------NGLASEAIEVFQM 437 (820)
Q Consensus 369 ~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~l~~~ 437 (820)
..+........+..|....+.+.+...+......+.. .+..+...+.. .|++++|+.+|++
T Consensus 156 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~ 227 (537)
T 3fp2_A 156 --------RGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHS 227 (537)
T ss_dssp -----------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred --------ccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 0000011122333344455555555555554443322 22222222211 2467777777777
Q ss_pred hhhcCCCCCCc--------ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 003439 438 MEECNEINPNQ--------GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQV 509 (820)
Q Consensus 438 m~~~~g~~pd~--------~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 509 (820)
+.+ ..|+. .++..+...+...|+++.|...+..+.+.. |+...+..+...|.+.|++++|.+.|+++
T Consensus 228 ~l~---~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 302 (537)
T 3fp2_A 228 LLS---ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKA 302 (537)
T ss_dssp HHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHH
T ss_pred HHH---HCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 765 44542 134445556667777777877777777754 33666777777777888888888877766
Q ss_pred C---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh
Q 003439 510 P---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL 585 (820)
Q Consensus 510 ~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~ 585 (820)
. +.+...|..+...|...|++++|++.|+++.+. .|+ ..++..+...+...|++++|.++++.+.+. .+.+.
T Consensus 303 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 378 (537)
T 3fp2_A 303 VDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLP 378 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCT
T ss_pred hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh
Confidence 5 445566777888888888888888888888874 443 457777788888888888888888887754 22345
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC----CHHHHHHHHHHHHhc----------CChhHHHHHHHHHhccC
Q 003439 586 KHYGCMVDLFGRAGHLGMAHNFIQNM----PVRP----DASIWGALLGACRIH----------GNMELGAVASDRLFEVD 647 (820)
Q Consensus 586 ~~~~~li~~~~~~g~~~eA~~~~~~m----~~~p----~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~ 647 (820)
..+..+...|.+.|++++|.+.++++ +..+ ....+..+...+... |++++|+..++++++.+
T Consensus 379 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 379 EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 67777888888888888888888775 1111 222344455666677 88888888888888888
Q ss_pred CCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 648 SENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 648 p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 459 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 459 PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888888888888888888888888888888765
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=3.5e-20 Score=205.85 Aligned_cols=364 Identities=9% Similarity=0.006 Sum_probs=249.4
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHhccCC---CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHH
Q 003439 276 EFNLFVSNNLINMYAKFGMMRHALRVFDQMME---RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLT 352 (820)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 352 (820)
+.+...+..+...|.+.|++++|..+|+.+.+ .+..+|..+...|.+.|++++|+..|+++.+.+ +.+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 34566777777888888888888888877643 356777888888888888888888888877653 22455677777
Q ss_pred HHHHhcCcchhhhhHHHHHHHhCCcCcch---hHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChH
Q 003439 353 SIVAQLNDCRNSRSVHGFIMRRGWFMEDV---IIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 429 (820)
Q Consensus 353 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~---~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 429 (820)
..+...|+++.|...+..+.+.. +.+. ..+..++..+... .+..+...+.+.|+++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHH
Confidence 78888888888888888877754 4455 6666666553322 1223344555667777
Q ss_pred HHHHHHHhhhhcCCCCC-CcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 003439 430 EAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQ 508 (820)
Q Consensus 430 ~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 508 (820)
+|+..|+++.+ ..| +..++..+...+...|++++|.+++..+.+.. +.+..++..+..+|.+.|++++|...|++
T Consensus 161 ~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 161 AAIAFLDKILE---VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777776665 233 34455566666667777777777777666543 23566677777777777777777777776
Q ss_pred CC---CCCccccchH------------HHHHHhcCChHHHHHHHHHHHHcCCCCCh-----hHHHHHHHHHHhcCCHHHH
Q 003439 509 VP---RSSSVPWNAI------------ISCHGIHGQGDKALNFFRQMLDEGVRPDH-----ITFVSLLTACSHSGLVSEG 568 (820)
Q Consensus 509 ~~---~~~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a 568 (820)
+. +.+...|..+ ...|...|++++|++.|+++.+ +.|+. ..+..+..++.+.|++++|
T Consensus 237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 237 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 65 2233334443 7788889999999999999988 45653 3677788888999999999
Q ss_pred HHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC---
Q 003439 569 QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGA------------CRIHG--- 631 (820)
Q Consensus 569 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~------------~~~~g--- 631 (820)
.+.++.+.+. .+.+...|..+..+|.+.|++++|.+.++++ ...|+ ..+|..+..+ |...|
T Consensus 315 ~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~ 392 (450)
T 2y4t_A 315 IRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392 (450)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSST
T ss_pred HHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCc
Confidence 9999888753 2235678888999999999999999999887 55665 4566666633 33334
Q ss_pred --ChhHHHHHHHH-HhccCCCCcc----------hHHhHHHHhhhcCCcch
Q 003439 632 --NMELGAVASDR-LFEVDSENVG----------YYVLMSNIYANVGKWEG 669 (820)
Q Consensus 632 --~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~y~~~g~~~~ 669 (820)
+.+++.+.+++ +++..|++.. .+..+..+|...|+.++
T Consensus 393 ~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 393 NAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp TCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 56788888886 7788887543 23345555555555443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=2.8e-19 Score=203.43 Aligned_cols=437 Identities=9% Similarity=0.030 Sum_probs=315.7
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHhccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhh
Q 003439 178 VFVAASLLHMYCRFGLANVARKLFDDMP---VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 254 (820)
Q Consensus 178 ~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 254 (820)
...+..+...|.+.|++++|.+.|+++. ..+..+|..+...|.+.|++++|++.|+++.+.+ +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 4566777888999999999999999875 3467889999999999999999999999998764 33567888888999
Q ss_pred hcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCC------CchHHHHHHHHHHhCCChhh
Q 003439 255 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER------DVVSWNSIIAAYEQSNDPIT 328 (820)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~------d~~~~~~li~~~~~~g~~~~ 328 (820)
...|++++|...+. .+.. .|+ ..+..+..+...+....|...++.+... .....+..+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 99999999999996 3322 222 2223344556666778899999888653 12223445555666666666
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCC
Q 003439 329 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 408 (820)
Q Consensus 329 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 408 (820)
++..+.+... .+ ..+..+..++..... ...-......|++++|..+|+.+.
T Consensus 179 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~------------------------~~~~~~~~a~~~~~~A~~~~~~~l 229 (537)
T 3fp2_A 179 EVSSVNTSSN----YD-TAYALLSDALQRLYS------------------------ATDEGYLVANDLLTKSTDMYHSLL 229 (537)
T ss_dssp HHHTSCCCCS----SC-SSHHHHHHHHHHHHT------------------------CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccc----cc-cHHHHHHHHHHHHHH------------------------hhhhhhHHHHHHHHHHHHHHHHHH
Confidence 5554433211 11 111111111111000 000001112245666666666554
Q ss_pred CC---C-------chHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhC
Q 003439 409 VK---D-------VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNC 478 (820)
Q Consensus 409 ~~---~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 478 (820)
.. + ..+|..+...+...|++++|+..|++... ..|+...+..+...+...|+++.|.+.+..+.+..
T Consensus 230 ~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 306 (537)
T 3fp2_A 230 SANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN---LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN 306 (537)
T ss_dssp C--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC
T ss_pred HHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence 32 2 12456666788889999999999999988 56777778888889999999999999999998875
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHH
Q 003439 479 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVS 554 (820)
Q Consensus 479 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ 554 (820)
. .+..++..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|+++.+. .|+ ...+..
T Consensus 307 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~ 383 (537)
T 3fp2_A 307 P-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTF 383 (537)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHH
T ss_pred C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHH
Confidence 3 467789999999999999999999999876 455677999999999999999999999999995 454 568888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCC----ChhHHHHHHHHHHHc----------CCHHHHHHHHHhC-CCCC-CHH
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKP----HLKHYGCMVDLFGRA----------GHLGMAHNFIQNM-PVRP-DAS 618 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p----~~~~~~~li~~~~~~----------g~~~eA~~~~~~m-~~~p-~~~ 618 (820)
+...+...|++++|.+.|+.+.+...-.+ ....+..+...|.+. |++++|.+.++++ ...| +..
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 463 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999875432122 122345556778888 9999999999987 3344 567
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 003439 619 IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 619 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 655 (820)
+|..+...+...|++++|...+++++++.|++.....
T Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 464 AKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999999999999999999999998776544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=2.4e-17 Score=176.40 Aligned_cols=308 Identities=11% Similarity=0.086 Sum_probs=209.6
Q ss_pred chHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHH
Q 003439 310 VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVD 389 (820)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~ 389 (820)
+..|..+...+.+.|++++|+..|+++.+.. +.+..++..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------------------------------------p~~~~~~~~~a~ 45 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-------------------------------------PDNYIAYYRRAT 45 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------------------------------cccHHHHHHHHH
Confidence 4566777778888888888888888876642 233344444555
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCC---Ccc-cHhhH--------
Q 003439 390 MYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP---NQG-TYVSI-------- 454 (820)
Q Consensus 390 ~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p---d~~-t~~~l-------- 454 (820)
.|...|++++|...|+... ..+...|..+...|...|++++|+..|++..+ ..| +.. .+..+
T Consensus 46 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~ 122 (359)
T 3ieg_A 46 VFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKADEMQR 122 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCcccChHHHHHHHHHHHHHHH
Confidence 5555555555555555432 22445566666666666777777777766655 344 222 22222
Q ss_pred ----HHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhc
Q 003439 455 ----LPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIH 527 (820)
Q Consensus 455 ----l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 527 (820)
...+...|++++|.+++..+.+... .+...+..+...|.+.|++++|...|+++. +.+...|..+...|...
T Consensus 123 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 201 (359)
T 3ieg_A 123 LRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQL 201 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3556677777777777777776543 356677778888888888888888887765 34556678888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCChh-HHH------------HHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh-----hHHH
Q 003439 528 GQGDKALNFFRQMLDEGVRPDHI-TFV------------SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL-----KHYG 589 (820)
Q Consensus 528 g~~~~A~~l~~~m~~~g~~p~~~-t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~-----~~~~ 589 (820)
|++++|+..|++..+. .|+.. .+. .+...+...|++++|.+.++.+.+. .|+. ..+.
T Consensus 202 ~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~ 276 (359)
T 3ieg_A 202 GDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKE 276 (359)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHH
Confidence 8888888888888874 45433 222 2255677888888888888887754 2332 2355
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh
Q 003439 590 CMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 663 (820)
Q Consensus 590 ~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 663 (820)
.+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|++...+..|..++..
T Consensus 277 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 5777888888888888888876 3344 566888888888888888888888888888888888777777665543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=2.9e-17 Score=175.82 Aligned_cols=293 Identities=11% Similarity=0.035 Sum_probs=244.6
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCC-CcccHhhHH
Q 003439 380 DVIIGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSIL 455 (820)
Q Consensus 380 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll 455 (820)
|+..+..+...|.+.|++++|...|+.+. ..+...|..+...|...|++++|+..|+++.+ ..| +...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA---LKMDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCcchHHHHHH
Confidence 44566778889999999999999998764 34677899999999999999999999999987 456 446677888
Q ss_pred HHhhccCChhHHHHHHHHHHHhCCC--CchhHHHHH------------HHHHHhcCCHHHHHHHHhhCC---CCCccccc
Q 003439 456 PAYSHVGALRQGIKIHARVIKNCLC--FDVFVATCL------------VDMYGKCGRIDDAMSLFYQVP---RSSSVPWN 518 (820)
Q Consensus 456 ~a~~~~~~~~~a~~i~~~~~~~g~~--~~~~~~~~l------------i~~y~~~g~~~~A~~~~~~~~---~~~~~~~~ 518 (820)
..+...|++++|...++.+.+.... .+...+..+ ...+...|++++|.+.|+++. +.+...|.
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 158 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRE 158 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 8899999999999999999886431 234444444 578999999999999999876 55667799
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh-hHHH-------
Q 003439 519 AIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL-KHYG------- 589 (820)
Q Consensus 519 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~------- 589 (820)
.+...|...|++++|+..++++.+. .| +..++..+...+...|++++|.+.++...+. .|+. ..+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHH
Confidence 9999999999999999999999984 45 5568889999999999999999999998854 3432 2222
Q ss_pred -----HHHHHHHHcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHH
Q 003439 590 -----CMVDLFGRAGHLGMAHNFIQNM-PVRPD-A----SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 658 (820)
Q Consensus 590 -----~li~~~~~~g~~~eA~~~~~~m-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 658 (820)
.+...+.+.|++++|.+.++++ ...|+ . ..|..+...+...|++++|+..++++++.+|+++..+..++
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3367799999999999999987 33344 2 23556778899999999999999999999999999999999
Q ss_pred HHhhhcCCcchHHHHHHHHHhC
Q 003439 659 NIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 659 ~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.+|...|++++|...++++.+.
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999998865
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=2.9e-14 Score=167.00 Aligned_cols=380 Identities=11% Similarity=0.043 Sum_probs=292.9
Q ss_pred HHHHhHHHhhhcCCChHHHHHHHHHHHHhC--CCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHh
Q 003439 245 ITVASILPVCARSDNILSGLLIHLYIVKHG--LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQ 322 (820)
Q Consensus 245 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~ 322 (820)
.-....++++...|...++.++++.++-.+ +..+....+.|+.+..+. +..+.....+....-+ ..-+...+.+
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~ 1061 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAIS 1061 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHh
Confidence 334556778888888999999988888432 123456667777777666 4455555555554323 4457788889
Q ss_pred CCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHH
Q 003439 323 SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACA 402 (820)
Q Consensus 323 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~ 402 (820)
.|.+++|..+|++.. -.......++ ...++++.|.++...+ .+..+|..+..++.+.|++++|..
T Consensus 1062 lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred CCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999952 1111122222 2667788888877643 447788999999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCc
Q 003439 403 VFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFD 482 (820)
Q Consensus 403 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 482 (820)
.|... .|...|..++..+.+.|++++|++.|...++ ..++....+.+..+|++.++++....+. + .++
T Consensus 1127 sYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk---~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1127 SYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK---KARESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred HHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hcccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 99764 6788899999999999999999999998776 3355444456888999998888644442 2 345
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 003439 483 VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS 562 (820)
Q Consensus 483 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 562 (820)
...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|++.+++. -+..+|..+..+|...
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhh
Confidence 566777999999999999999999885 47999999999999999999999876 3558899999999999
Q ss_pred CCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhc--CChhHHHH
Q 003439 563 GLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDAS-IWGALLGACRIH--GNMELGAV 638 (820)
Q Consensus 563 g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~--g~~~~a~~ 638 (820)
|++..|..... ++.-++..+..++..|.+.|.+++|+.+++.. +.+|... .|.-|...+.+. +++.++.+
T Consensus 1264 ~Ef~LA~~cgl------~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1264 KEFRLAQMCGL------HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred hHHHHHHHHHH------hhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999988654 34456678889999999999999999999876 5565443 776666666655 57778888
Q ss_pred HHHHHhccCC-----CCcchHHhHHHHhhhcCCcchHHH
Q 003439 639 ASDRLFEVDS-----ENVGYYVLMSNIYANVGKWEGVDE 672 (820)
Q Consensus 639 ~~~~~~~~~p-----~~~~~~~~l~~~y~~~g~~~~A~~ 672 (820)
.|..-..+.| ++...|.-++-+|.+.|+|+.|..
T Consensus 1338 ~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1338 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 8888777776 678888999999999999999984
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.75 E-value=2.7e-16 Score=166.21 Aligned_cols=285 Identities=12% Similarity=0.085 Sum_probs=225.1
Q ss_pred cCcchhHHhHHHHHHHhcCCHHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCC-CcccHh
Q 003439 377 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYV 452 (820)
Q Consensus 377 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~ 452 (820)
.+.+..+...+...+...|++++|.++|+.+. ..+...+..++..+.+.|++++|+.+|+++.+ ..| +...+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~ 94 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD---LYPSNPVSWF 94 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTSTHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH---hCcCCHHHHH
Confidence 45566667777777888888888888887764 23455667777888888888888888888877 344 445666
Q ss_pred hHHHHhhccC-ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcC
Q 003439 453 SILPAYSHVG-ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHG 528 (820)
Q Consensus 453 ~ll~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 528 (820)
.+...+...| ++++|.+.++.+.+... .+...+..+...|...|++++|.+.|++.. +.+..+|..+...|...|
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 7777778888 88888888888877642 356678888899999999999999998776 445566788888999999
Q ss_pred ChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC-------CCChhHHHHHHHHHHHcCC
Q 003439 529 QGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI-------KPHLKHYGCMVDLFGRAGH 600 (820)
Q Consensus 529 ~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~-------~p~~~~~~~li~~~~~~g~ 600 (820)
++++|++.|++..+. .|+ ..++..+...+...|++++|..+++.+.+...- ......+..+...|.+.|+
T Consensus 174 ~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 174 NSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp CHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 999999999999884 454 568888888999999999999999988764311 3345788899999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHh-hhcCCc
Q 003439 601 LGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY-ANVGKW 667 (820)
Q Consensus 601 ~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y-~~~g~~ 667 (820)
+++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..++.++ ...|+.
T Consensus 252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 99999999887 3334 5668899999999999999999999999999999999999999888 455554
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.75 E-value=1.8e-13 Score=160.50 Aligned_cols=251 Identities=14% Similarity=0.148 Sum_probs=171.0
Q ss_pred hcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHH
Q 003439 393 KLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHA 472 (820)
Q Consensus 393 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~ 472 (820)
..|++++|.++.++.. +..+|..+..++...|++++|++.|.+. -|...|..++.+|.+.|+++++.+++.
T Consensus 1088 ~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~ 1158 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQ 1158 (1630)
T ss_pred HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5556666666665542 3556777777777777777777777543 244556667777777777777777777
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH
Q 003439 473 RVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITF 552 (820)
Q Consensus 473 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 552 (820)
...+.. ++..+.+.++..|++.+++++..... ..++...|..+...|...|++++|..+|... ..|
T Consensus 1159 mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny 1224 (1630)
T 1xi4_A 1159 MARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 1224 (1630)
T ss_pred HHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHH
Confidence 766654 33333445777777777777544443 2344455666777777777777777777764 267
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003439 553 VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGN 632 (820)
Q Consensus 553 ~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~ 632 (820)
..+...+.+.|++++|.+.+++. .+..+|..+..++...|++..|........ -++..+..++..|...|.
T Consensus 1225 ~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~ 1295 (1630)
T 1xi4_A 1225 GRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGY 1295 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCC
Confidence 77777777777777777777544 234667777777777777777777665432 334445578888889999
Q ss_pred hhHHHHHHHHHhccCCCCcchHHhHHHHhhhc--CCcchHHHHHH
Q 003439 633 MELGAVASDRLFEVDSENVGYYVLMSNIYANV--GKWEGVDEVRS 675 (820)
Q Consensus 633 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~--g~~~~A~~~~~ 675 (820)
+++|+.++++.++++|.+.+.+.-|+.+|++- ++..|+.++|.
T Consensus 1296 feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1296 FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999998888887777777654 34445555444
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=3.7e-16 Score=165.21 Aligned_cols=283 Identities=13% Similarity=0.134 Sum_probs=112.7
Q ss_pred cCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHH
Q 003439 190 RFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLY 269 (820)
Q Consensus 190 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 269 (820)
+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6789999999999997664 9999999999999999999999763 6888999999999999999999998888
Q ss_pred HHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHH
Q 003439 270 IVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLV 349 (820)
Q Consensus 270 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 349 (820)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~- 151 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF- 151 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH-
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH-
Confidence 7774 45678899999999999999999988864 77789999999999999999999999976 234
Q ss_pred HHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChH
Q 003439 350 SLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLAS 429 (820)
Q Consensus 350 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 429 (820)
..|++.+.+.|++++|.+.+... .++.+|..++.+|...|+++
T Consensus 152 -----------------------------------~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~ 194 (449)
T 1b89_A 152 -----------------------------------GRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFR 194 (449)
T ss_dssp -----------------------------------HHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHH
T ss_pred -----------------------------------HHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHH
Confidence 55556666666666666666665 25666777777777777777
Q ss_pred HHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cCCHHHHHHHHh
Q 003439 430 EAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK--CGRIDDAMSLFY 507 (820)
Q Consensus 430 ~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~--~g~~~~A~~~~~ 507 (820)
.|......+. +.|+. ...++..|.+.|.++++..+++..+... +....+++-|.-+|+| -+++.+..+.|.
T Consensus 195 lA~~~~l~L~----~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 195 LAQMCGLHIV----VHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHHTTTTTT----TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHH----hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6644333221 23333 3345566666677777766666665443 3445566666666654 356666777775
Q ss_pred hCC---C-----CCccccchHHHHHHhcCChHHHHHHHHHHHH
Q 003439 508 QVP---R-----SSSVPWNAIISCHGIHGQGDKALNFFRQMLD 542 (820)
Q Consensus 508 ~~~---~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 542 (820)
.-. + .+...|..+.-.|.+.++++.|.. .|.+
T Consensus 268 ~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~ 307 (449)
T 1b89_A 268 SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMN 307 (449)
T ss_dssp TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH---HHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH---HHHh
Confidence 433 2 345669999999999999998876 4555
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=4.5e-16 Score=167.45 Aligned_cols=279 Identities=9% Similarity=-0.034 Sum_probs=220.1
Q ss_pred HHhcCCHHHHHH-HHhcCCC---C----CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCC-CcccHhhHHHHhhcc
Q 003439 391 YAKLGIINSACA-VFEGLPV---K----DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHV 461 (820)
Q Consensus 391 y~~~g~~~~A~~-~f~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~ 461 (820)
|.-.|++++|.. .|+.... . +...|..+...+.+.|++++|+..|+++.+ ..| +..++..+...+...
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ---QDPKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHC
Confidence 344577788887 7764432 1 356688888899999999999999999887 445 445677777888899
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccch---------------HHHH
Q 003439 462 GALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNA---------------IISC 523 (820)
Q Consensus 462 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~---------------li~~ 523 (820)
|++++|...+..+++.. +.+..++..+...|.+.|++++|.+.|+++. +.+...+.. .+..
T Consensus 112 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 112 EQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH
T ss_pred cCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 99999999999988875 3467788889999999999999999998765 233333332 2444
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCC
Q 003439 524 HGIHGQGDKALNFFRQMLDEGVRPD---HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH 600 (820)
Q Consensus 524 ~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 600 (820)
+...|++++|+..|+++.+. .|+ ..++..+...+...|++++|.+.++.+.+. .+.+...+..+...|.+.|+
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HhhcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCC
Confidence 44899999999999999985 455 678889999999999999999999998854 23356789999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-----------cchHHhHHHHhhhcCCc
Q 003439 601 LGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSEN-----------VGYYVLMSNIYANVGKW 667 (820)
Q Consensus 601 ~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~y~~~g~~ 667 (820)
+++|.+.++++ ...| +..+|..+...+...|++++|+..+++++++.|++ ...+..++.+|...|++
T Consensus 267 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 99999999987 3344 56799999999999999999999999999999987 78899999999999999
Q ss_pred chHHHHHHHH
Q 003439 668 EGVDEVRSLA 677 (820)
Q Consensus 668 ~~A~~~~~~m 677 (820)
++|..++++.
T Consensus 347 ~~A~~~~~~~ 356 (368)
T 1fch_A 347 DAYGAADARD 356 (368)
T ss_dssp GGHHHHHTTC
T ss_pred HhHHHhHHHH
Confidence 9999887643
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.72 E-value=1.6e-15 Score=160.17 Aligned_cols=262 Identities=10% Similarity=0.067 Sum_probs=226.2
Q ss_pred CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCC-CcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHH
Q 003439 410 KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATC 488 (820)
Q Consensus 410 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 488 (820)
.+...+..+...+...|++++|+++|+++.+ ..| +...+..+...+...|++++|..++..+.+... .+...+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 95 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVME---KDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFA 95 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHH
Confidence 4667788888999999999999999999987 344 344556677888999999999999999988753 36778888
Q ss_pred HHHHHHhcC-CHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcC
Q 003439 489 LVDMYGKCG-RIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSG 563 (820)
Q Consensus 489 li~~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 563 (820)
+...|...| ++++|.+.|++.. +.+...|..+...|...|++++|++.|+++.+. .|+ ..++..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHh
Confidence 999999999 9999999999866 445667999999999999999999999999995 454 567778999999999
Q ss_pred CHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcC
Q 003439 564 LVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV----------RPDASIWGALLGACRIHG 631 (820)
Q Consensus 564 ~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~----------~p~~~~~~~ll~~~~~~g 631 (820)
++++|.++++.+.+ ..| +...+..+...|.+.|++++|.+.++++ .. +.+..+|..+...+...|
T Consensus 174 ~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 174 NSKLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp CHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 99999999999874 344 5678899999999999999999999876 11 234568999999999999
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 632 NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 632 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
++++|+..+++++++.|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999887644
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=1.7e-16 Score=167.83 Aligned_cols=354 Identities=12% Similarity=0.067 Sum_probs=165.9
Q ss_pred ccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHH
Q 003439 291 KFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGF 370 (820)
Q Consensus 291 ~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~ 370 (820)
+.|++++|.++++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|+++++...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6788999999999996664 8999999999999999999999763 6788999999999999999999998887
Q ss_pred HHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCccc
Q 003439 371 IMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGT 450 (820)
Q Consensus 371 ~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t 450 (820)
..+. .+++.+.+.|+.+|.|+|+++++.++++. ++..+|+.+...|...|++++|..+|..+ ..
T Consensus 87 ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n 150 (449)
T 1b89_A 87 ARKK---ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SN 150 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT----------TC
T ss_pred HHHh---CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hh
Confidence 7774 35578899999999999999999988864 67789999999999999999999999976 36
Q ss_pred HhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCCh
Q 003439 451 YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQG 530 (820)
Q Consensus 451 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 530 (820)
|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .+..-...++..|.+.|++
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 889999999999999999999877 378899999999999999999987776654 3333344688899999999
Q ss_pred HHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHh--cCCHHHHHHHHHHhHHhhCCCC------ChhHHHHHHHHHHHcCCH
Q 003439 531 DKALNFFRQMLDEGVRPDH-ITFVSLLTACSH--SGLVSEGQRYFHMMQEEFGIKP------HLKHYGCMVDLFGRAGHL 601 (820)
Q Consensus 531 ~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~--~g~~~~a~~~~~~m~~~~g~~p------~~~~~~~li~~~~~~g~~ 601 (820)
++|+.+++..+. ..|-. ..|+.|.-++++ .+++.+.++.|.. +..++| +..+|.-++.+|...|++
T Consensus 224 eEai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 224 EELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp HHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 999999999886 45544 356666555554 4556666665543 335555 567899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC----------cchHHhHHHHhhhcCCcchHH
Q 003439 602 GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN----------VGYYVLMSNIYANVGKWEGVD 671 (820)
Q Consensus 602 ~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----------~~~~~~l~~~y~~~g~~~~A~ 671 (820)
+.|...+-+-+ |+..--........+-.+.|.--++..--++-.|.- ---+...+.++.+.|.+.-+.
T Consensus 299 d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~ 376 (449)
T 1b89_A 299 DNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVK 376 (449)
T ss_dssp HHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTH
T ss_pred HHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHH
Confidence 99987765542 121111122222233333333222222222222210 001234455667777777777
Q ss_pred HHHHHHHhCCC
Q 003439 672 EVRSLARDRGL 682 (820)
Q Consensus 672 ~~~~~m~~~~~ 682 (820)
.+++.+.+.+.
T Consensus 377 ~yl~~v~~~n~ 387 (449)
T 1b89_A 377 PYLRSVQNHNN 387 (449)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHhhH
Confidence 77776665543
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=1.1e-14 Score=165.14 Aligned_cols=410 Identities=9% Similarity=0.023 Sum_probs=253.9
Q ss_pred ChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC--CCchHHHHHHHH-
Q 003439 243 DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--RDVVSWNSIIAA- 319 (820)
Q Consensus 243 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~d~~~~~~li~~- 319 (820)
|...|..++.. ...|+++.|..+++.+++.- +.+...|..++..+.+.|++++|..+|++... |++..|...+..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 44556666653 55677777777777776542 34566677777777777777777777776654 455556555542
Q ss_pred HHhCCChhhHHH----HHHHHHHc-CCCCCc-chHHHHHHHHHh---------cCcchhhhhHHHHHHHhCCcCcchhHH
Q 003439 320 YEQSNDPITAHG----FFTTMQQA-GIQPDL-LTLVSLTSIVAQ---------LNDCRNSRSVHGFIMRRGWFMEDVIIG 384 (820)
Q Consensus 320 ~~~~g~~~~A~~----~~~~m~~~-g~~pd~-~t~~~ll~a~~~---------~~~~~~a~~i~~~~~~~g~~~~~~~~~ 384 (820)
....|+.++|.+ +|++.... |..|+. ..|...+..... .|+.+.++.++..+++.. ......++
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P-~~~~~~~~ 168 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP-MINIEQLW 168 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC-CTTHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch-hhhHHHHH
Confidence 234566665554 44444332 433332 233333332222 344445555555544411 11111111
Q ss_pred hHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhh------hcCC---CCCCc-------
Q 003439 385 NAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMME------ECNE---INPNQ------- 448 (820)
Q Consensus 385 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~------~~~g---~~pd~------- 448 (820)
..........|. ..+..++. .+.+++++|..++.++. + .. +.|+.
T Consensus 169 ~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~-~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLD-RNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCC-SSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhc-cccccCCCCCChhHHHH
Confidence 111111000000 00111110 12345666766666522 1 11 23331
Q ss_pred -ccHhhHHHHhhc----cCCh----hHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHH
Q 003439 449 -GTYVSILPAYSH----VGAL----RQGIKIHARVIKNCLCFDVFVATCLVDMYGK-------CGRID-------DAMSL 505 (820)
Q Consensus 449 -~t~~~ll~a~~~----~~~~----~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~ 505 (820)
..+...+.-... .++. +.+..+++.+++.. +.+..+|..++..+.+ .|+++ +|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 122222222111 1222 36667888887763 3467788888888775 79987 89999
Q ss_pred HhhCCC----CCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHHhh
Q 003439 506 FYQVPR----SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH--ITFVSLLTACSHSGLVSEGQRYFHMMQEEF 579 (820)
Q Consensus 506 ~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 579 (820)
|++... .+...|..++..+.+.|++++|..+|+++++ +.|+. ..|..++..+.+.|++++|.++|+...+
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-- 384 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-- 384 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh--
Confidence 997763 3456699999999999999999999999999 56764 3788888888899999999999998874
Q ss_pred CCCCC-hhHHHHHHHH-HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc---
Q 003439 580 GIKPH-LKHYGCMVDL-FGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG--- 652 (820)
Q Consensus 580 g~~p~-~~~~~~li~~-~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~--- 652 (820)
..|. ...|...+.+ +...|+.++|.++|++. ...| +...|..++..+...|+.++|+.+|+++++..|.++.
T Consensus 385 -~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~ 463 (530)
T 2ooe_A 385 -DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463 (530)
T ss_dssp -CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred -ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence 3443 3333332222 34689999999999976 3345 5679999999999999999999999999998776655
Q ss_pred -hHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 653 -YYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 653 -~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.+...+......|+.+.+..+.+++.+.
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6667778888899999999999888765
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.72 E-value=5.2e-15 Score=166.02 Aligned_cols=351 Identities=10% Similarity=0.008 Sum_probs=238.4
Q ss_pred cCCHHHHHHHHhccCC-CCchHHHHHHHHHHh----CCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHh----cCcch
Q 003439 292 FGMMRHALRVFDQMME-RDVVSWNSIIAAYEQ----SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ----LNDCR 362 (820)
Q Consensus 292 ~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~ 362 (820)
.+++++|...|+...+ .+..++..|...|.. .+++++|+++|++..+.| +...+..+-..+.. .++.+
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 4444444444443322 233344444444444 444445555554444432 22333333333333 34445
Q ss_pred hhhhHHHHHHHhCCcCcchhHHhHHHHHHHh----cCCHHHHHHHHhcCCC-CCchHHHHHHHHHHH----cCChHHHHH
Q 003439 363 NSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK----LGIINSACAVFEGLPV-KDVISWNTLITGYAQ----NGLASEAIE 433 (820)
Q Consensus 363 ~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~ 433 (820)
.|...+....+.| +......|..+|.. .++.++|.+.|+...+ .+..++..+...|.+ .++.++|++
T Consensus 133 ~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 208 (490)
T 2xm6_A 133 ESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQ 208 (490)
T ss_dssp HHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence 5555555444443 33445555666665 6677777777765443 356677777777777 788888888
Q ss_pred HHHhhhhcCCCCCCcccHhhHHHHhhc----cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHH
Q 003439 434 VFQMMEECNEINPNQGTYVSILPAYSH----VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK----CGRIDDAMSL 505 (820)
Q Consensus 434 l~~~m~~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~ 505 (820)
.|++..+ .+ +...+..+...+.. .++.++|.++++...+.| +...+..|..+|.. .++.++|.+.
T Consensus 209 ~~~~a~~-~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 209 WYRKSAT-SG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp HHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred HHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 8888776 43 33445555555554 678888888888887765 45566677777777 8899999999
Q ss_pred HhhCC-CCCccccchHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHHhH
Q 003439 506 FYQVP-RSSSVPWNAIISCHGIH-----GQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG---LVSEGQRYFHMMQ 576 (820)
Q Consensus 506 ~~~~~-~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~ 576 (820)
|++.. ..+...+..+...|... ++.++|+..|++..+.| +...+..+...+...| +.++|.++|+...
T Consensus 282 ~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 282 YRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 98876 34555677778888777 89999999999999865 4456677777777756 7899999999887
Q ss_pred HhhCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCC
Q 003439 577 EEFGIKPHLKHYGCMVDLFGR----AGHLGMAHNFIQNMPVRPDASIWGALLGACRI----HGNMELGAVASDRLFEVDS 648 (820)
Q Consensus 577 ~~~g~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 648 (820)
+. .+...+..|..+|.. .++.++|.+.+++.-...+...+..|...|.. .++.++|...++++.+.+|
T Consensus 359 ~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 359 AK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 54 367788889999998 89999999999987333467788899999988 8999999999999999985
Q ss_pred C---CcchHHhHHHHhhh
Q 003439 649 E---NVGYYVLMSNIYAN 663 (820)
Q Consensus 649 ~---~~~~~~~l~~~y~~ 663 (820)
+ ++.....|+.++..
T Consensus 435 ~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 435 NLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CHHHHHHHHHHHTTSCHH
T ss_pred CCcCCHHHHHHHHhcCHh
Confidence 4 67777777776654
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=2.3e-14 Score=162.42 Aligned_cols=409 Identities=10% Similarity=0.100 Sum_probs=282.6
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHH
Q 003439 207 RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLI 286 (820)
Q Consensus 207 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 286 (820)
.|...|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|+.+.|..+++.+++.. |++..|..++
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 36678888887 47889999999999998865 23345577788888888999999999999988764 5777777777
Q ss_pred H-HHHccCCHHHHHH----HHhccC-----C-CCchHHHHHHHHHHh---------CCChhhHHHHHHHHHHcCCCCCcc
Q 003439 287 N-MYAKFGMMRHALR----VFDQMM-----E-RDVVSWNSIIAAYEQ---------SNDPITAHGFFTTMQQAGIQPDLL 346 (820)
Q Consensus 287 ~-~y~~~g~~~~A~~----~f~~m~-----~-~d~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~pd~~ 346 (820)
. .....|+.++|.+ +|+... . ++...|...+....+ .|++++|..+|++.... |+..
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~ 163 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMIN 163 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhh
Confidence 5 3345677777665 666542 1 356778888876655 68899999999999872 4321
Q ss_pred hHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhc-------CC------CCC--
Q 003439 347 TLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG-------LP------VKD-- 411 (820)
Q Consensus 347 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-------~~------~~~-- 411 (820)
...+...+... +.. .| ..+...++. .+.++++.|..++.. +. .++
T Consensus 164 -~~~~~~~~~~~---e~~---------~~-----~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~ 223 (530)
T 2ooe_A 164 -IEQLWRDYNKY---EEG---------IN-----IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT 223 (530)
T ss_dssp -HHHHHHHHHHH---HHH---------HC-----HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--
T ss_pred -HHHHHHHHHHH---HHh---------hc-----hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 11111122110 000 00 000011110 122334445444332 11 111
Q ss_pred ------chHHHHHHHHHHHc----CCh----HHHHHHHHhhhhcCCCCCC-cccHhhHHHHhhc-------cCChh----
Q 003439 412 ------VISWNTLITGYAQN----GLA----SEAIEVFQMMEECNEINPN-QGTYVSILPAYSH-------VGALR---- 465 (820)
Q Consensus 412 ------~~~~~~li~~~~~~----g~~----~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a~~~-------~~~~~---- 465 (820)
...|...+.-...+ ++. ++|+.+|++... ..|+ ...+......+.+ .|+++
T Consensus 224 ~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~---~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 224 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL---VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 24566655433332 222 478889998887 4554 3445555555553 68887
Q ss_pred ---HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-Cc-cccchHHHHHHhcCChHHHHHHHH
Q 003439 466 ---QGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP--RS-SS-VPWNAIISCHGIHGQGDKALNFFR 538 (820)
Q Consensus 466 ---~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-~~-~~~~~li~~~~~~g~~~~A~~l~~ 538 (820)
.|..+++..++.-.+.+...+..++..+.+.|++++|..+|+++. .+ +. ..|..++..+.+.|+.++|.++|+
T Consensus 301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 899999998863234468889999999999999999999999876 23 32 479999999999999999999999
Q ss_pred HHHHcCCCCC-hhHHHHHHHH-HHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----C
Q 003439 539 QMLDEGVRPD-HITFVSLLTA-CSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM----P 612 (820)
Q Consensus 539 ~m~~~g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m----~ 612 (820)
+..+. .|+ ...|...... +...|++++|..+|+...+.. +-+...|..+++.+.+.|+.++|..+|++. +
T Consensus 381 ~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 381 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 99984 454 2333332222 346899999999999988653 235688999999999999999999999987 2
Q ss_pred CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 613 VRPD--ASIWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 613 ~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
..|+ ...|...+.....+|+.+.+..+.+++.+..|+
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 3332 448999999999999999999999999998885
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.68 E-value=1.6e-15 Score=163.18 Aligned_cols=276 Identities=14% Similarity=0.051 Sum_probs=205.4
Q ss_pred CCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHH-HHHhhhhcCCCCC--CcccHhhHHHHhhccCChhHHHHHH
Q 003439 395 GIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIE-VFQMMEECNEINP--NQGTYVSILPAYSHVGALRQGIKIH 471 (820)
Q Consensus 395 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~-l~~~m~~~~g~~p--d~~t~~~ll~a~~~~~~~~~a~~i~ 471 (820)
+.++.+...|+.+...+.. .+...|++++|++ .|++......-.| +...+..+...+...|++++|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3344445555555433322 3445688999999 8887665121222 3456778888899999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003439 472 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD 548 (820)
Q Consensus 472 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 548 (820)
+.+++.. +.+...+..+...|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+. .|+
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 164 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPA 164 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcC
Confidence 9999875 3467888999999999999999999999775 556778999999999999999999999999994 455
Q ss_pred hh-HHHH---------------HHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 003439 549 HI-TFVS---------------LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM- 611 (820)
Q Consensus 549 ~~-t~~~---------------ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m- 611 (820)
.. .+.. .+..+...|++++|.++++.+.+...-.++...+..+..+|.+.|++++|.+.++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 2221 234444899999999999999865322225788999999999999999999999987
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 612 PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 612 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
...| +..+|..+...+...|++++|+..+++++++.|+++..+..++.+|.+.|++++|...++++.+.
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3344 56799999999999999999999999999999999999999999999999999999999998765
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.67 E-value=1.5e-15 Score=163.35 Aligned_cols=258 Identities=8% Similarity=-0.061 Sum_probs=197.8
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCC-CcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHH
Q 003439 411 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 489 (820)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l 489 (820)
+...|..+...+.+.|++++|+..|+++.+ ..| +..++..+...+...|++++|...++.+++.. +.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAIL---QDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 445577777777777777777777777766 334 34556666777777777777777777777654 2356777888
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC---Cc----------cccchHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChhHHH
Q 003439 490 VDMYGKCGRIDDAMSLFYQVPRS---SS----------VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP---DHITFV 553 (820)
Q Consensus 490 i~~y~~~g~~~~A~~~~~~~~~~---~~----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~ 553 (820)
...|.+.|++++|...|+++... +. ..+..+...|...|++++|++.|+++.+. .| +..++.
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 217 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQT 217 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHH
Confidence 88888888888888888776521 11 22344578899999999999999999995 45 467889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 003439 554 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHG 631 (820)
Q Consensus 554 ~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 631 (820)
.+...+...|++++|.+.|+.+.+. .+.+...+..+..+|.+.|++++|.+.++++ ...| +..+|..+...|...|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 9999999999999999999998864 2335788999999999999999999999987 3445 4779999999999999
Q ss_pred ChhHHHHHHHHHhccCCC------------CcchHHhHHHHhhhcCCcchHHHHHHH
Q 003439 632 NMELGAVASDRLFEVDSE------------NVGYYVLMSNIYANVGKWEGVDEVRSL 676 (820)
Q Consensus 632 ~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~A~~~~~~ 676 (820)
++++|+..+++++++.|+ +...+..|+.++...|+.+.+.++.+.
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999999887 366788999999999999988877654
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=7.1e-15 Score=164.09 Aligned_cols=362 Identities=10% Similarity=0.020 Sum_probs=202.2
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHhccC-----------C-CCchHHHHHHHHHHhCCChhhHHHHHHHHHHcC---C-
Q 003439 278 NLFVSNNLINMYAKFGMMRHALRVFDQMM-----------E-RDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAG---I- 341 (820)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~-----------~-~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~- 341 (820)
....||.|...|...|+.++|++.|++.. . ...++|+.+...|...|++++|+..+++..+.. .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 34567777777777788887777776531 1 245678888888888888888888888765421 0
Q ss_pred --CCC-cchHHHHHHHHHh--cCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHH
Q 003439 342 --QPD-LLTLVSLTSIVAQ--LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWN 416 (820)
Q Consensus 342 --~pd-~~t~~~ll~a~~~--~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~ 416 (820)
.++ ..++.....++.. .++++.|...+..+++.. | .+...+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p-------------------------------~~~~~~~ 176 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--P-------------------------------KNPEFTS 176 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--T-------------------------------TCHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--C-------------------------------CCHHHHH
Confidence 111 1122222222221 123444444444444332 2 2333333
Q ss_pred HHHHH---HHHcCChHHHHHHHHhhhhcCCCCCCcc-cHhhHHHHh----hccCChhHHHHHHHHHHHhCCCCchhHHHH
Q 003439 417 TLITG---YAQNGLASEAIEVFQMMEECNEINPNQG-TYVSILPAY----SHVGALRQGIKIHARVIKNCLCFDVFVATC 488 (820)
Q Consensus 417 ~li~~---~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~~~ll~a~----~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 488 (820)
.+... +...++.++|++.|++..+ +.|+.. ++..+...+ ...++.++|.++++.+.+... .+..++..
T Consensus 177 ~~~~~~~~l~~~~~~~~al~~~~~al~---l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~ 252 (472)
T 4g1t_A 177 GLAIASYRLDNWPPSQNAIDPLRQAIR---LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRS 252 (472)
T ss_dssp HHHHHHHHHHHSCCCCCTHHHHHHHHH---HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhh---cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHH
Confidence 33322 2234555666666666555 344332 222222222 223455666666666655432 34455566
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHh-------------------cCChHHHHHHHHHHHHcCCC
Q 003439 489 LVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGI-------------------HGQGDKALNFFRQMLDEGVR 546 (820)
Q Consensus 489 li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~ 546 (820)
+...|.+.|++++|...|++.. +.+...|..+...|.. .+..++|+..|++..+. .
T Consensus 253 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~ 330 (472)
T 4g1t_A 253 AAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--N 330 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--C
Confidence 6666666666666666666554 2333344444444422 23467888888888884 4
Q ss_pred CC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChh----HHHHHHH-HHHHcCCHHHHHHHHHhC-CCCCCHHH
Q 003439 547 PD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLK----HYGCMVD-LFGRAGHLGMAHNFIQNM-PVRPDASI 619 (820)
Q Consensus 547 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~----~~~~li~-~~~~~g~~~eA~~~~~~m-~~~p~~~~ 619 (820)
|+ ..++..+...+...|++++|.+.|++..+. .|+.. .+..+.. .+...|+.++|++.+++. .+.|+...
T Consensus 331 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~ 407 (472)
T 4g1t_A 331 DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE 407 (472)
T ss_dssp TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH
T ss_pred CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence 54 457888899999999999999999988743 34332 2333333 234678999999999876 56676554
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCCCcCCceeE
Q 003439 620 WGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSS 690 (820)
Q Consensus 620 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 690 (820)
+... .+.+..++++.++.+|+++.++..|+.+|...|++++|.+.++++.+.+.......+|
T Consensus 408 ~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 408 KEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 4333 3445677888899999999999999999999999999999999998876544444555
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.67 E-value=1e-15 Score=164.62 Aligned_cols=231 Identities=13% Similarity=0.020 Sum_probs=196.1
Q ss_pred CcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHH
Q 003439 447 NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISC 523 (820)
Q Consensus 447 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 523 (820)
+...+..+...+.+.|++++|..+++.+++... .+..++..+...|.+.|++++|...|+++. +.+...|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 445678888899999999999999999998753 468889999999999999999999999876 4567789999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChh-H----------HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 003439 524 HGIHGQGDKALNFFRQMLDEGVRPDHI-T----------FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 592 (820)
Q Consensus 524 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t----------~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 592 (820)
|...|++++|++.|+++.+. .|+.. . +..+...+...|++++|.++++.+.+...-.++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999984 45432 2 23357789999999999999999986533323578999999
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchH
Q 003439 593 DLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 670 (820)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 670 (820)
..|.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|+..+++++++.|+++..+..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 3344 5779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 003439 671 DEVRSLARDR 680 (820)
Q Consensus 671 ~~~~~~m~~~ 680 (820)
...++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.66 E-value=1.3e-13 Score=154.51 Aligned_cols=352 Identities=13% Similarity=0.031 Sum_probs=291.3
Q ss_pred CCchHHHHHHHHHHh----CCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHh----cCcchhhhhHHHHHHHhCCcCc
Q 003439 308 RDVVSWNSIIAAYEQ----SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQ----LNDCRNSRSVHGFIMRRGWFME 379 (820)
Q Consensus 308 ~d~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~ 379 (820)
.+..++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+.|...+....+.|
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---- 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---- 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----
Confidence 466667777777777 899999999999998864 45677777777777 889999999999998876
Q ss_pred chhHHhHHHHHHHh----cCCHHHHHHHHhcCCCC-CchHHHHHHHHHHH----cCChHHHHHHHHhhhhcCCCCCCccc
Q 003439 380 DVIIGNAVVDMYAK----LGIINSACAVFEGLPVK-DVISWNTLITGYAQ----NGLASEAIEVFQMMEECNEINPNQGT 450 (820)
Q Consensus 380 ~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~g~~pd~~t 450 (820)
+......|..+|.. .++.++|...|+...+. +..++..+...|.. .+++++|++.|++..+ .+ +...
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~-~~---~~~a 185 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE-QG---NVWS 185 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHH
Confidence 55667778888988 88999999999876544 66788888888887 7899999999999987 43 4556
Q ss_pred HhhHHHHhhc----cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhCC-CCCccccchHH
Q 003439 451 YVSILPAYSH----VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK----CGRIDDAMSLFYQVP-RSSSVPWNAII 521 (820)
Q Consensus 451 ~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~-~~~~~~~~~li 521 (820)
+..+...+.. .++.++|.+.+....+.| +...+..|..+|.. .++.++|.+.|++.. ..+...+..+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 262 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLG 262 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6666666666 899999999999998876 56678888888886 899999999999876 44556677777
Q ss_pred HHHHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-----CCHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 003439 522 SCHGI----HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHS-----GLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 592 (820)
Q Consensus 522 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 592 (820)
..|.. .++.++|++.|++..+.| +...+..+...+... +++++|.++|+...+. + +...+..|.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg 335 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLG 335 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHH
Confidence 78877 899999999999998864 455677777888877 8999999999998754 2 456778888
Q ss_pred HHHHHcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh--
Q 003439 593 DLFGRAG---HLGMAHNFIQNMPVRPDASIWGALLGACRI----HGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN-- 663 (820)
Q Consensus 593 ~~~~~~g---~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~-- 663 (820)
.+|.+.| +.++|.+.|++.-...+...+..|...|.. .++.++|...++++.+.. ++..+..|+.+|..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 8888877 889999999987434578899999999998 899999999999998764 57889999999998
Q ss_pred --cCCcchHHHHHHHHHhCCC
Q 003439 664 --VGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 664 --~g~~~~A~~~~~~m~~~~~ 682 (820)
.+++++|...+++..+.+.
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999988763
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.65 E-value=1.2e-14 Score=150.30 Aligned_cols=265 Identities=10% Similarity=-0.003 Sum_probs=185.7
Q ss_pred hcCCHHHHHHHHhcCCCCCc----hHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHH
Q 003439 393 KLGIINSACAVFEGLPVKDV----ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 468 (820)
Q Consensus 393 ~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 468 (820)
..|++..|...++.....+. ...-.+..+|...|++++|+..++. .-.|+..++..+...+...++.+.|.
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 34555555555544433221 1223345556666666666554432 12344445555555566666666666
Q ss_pred HHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003439 469 KIHARVIKNCLCF-DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP 547 (820)
Q Consensus 469 ~i~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 547 (820)
+.++.+.+.+..| +...+..+...|.+.|++++|.+.|++ ..+...|..++..|.+.|++++|.+.|+++.+. .|
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DE 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--Cc
Confidence 6666665554333 455666777889999999999999998 567778889999999999999999999999985 57
Q ss_pred ChhHH---HHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 003439 548 DHITF---VSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGA 622 (820)
Q Consensus 548 ~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ 622 (820)
+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|.+.++++ ...| +..+|..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 75422 12334444568999999999999875 3457788999999999999999999999986 4455 5668999
Q ss_pred HHHHHHhcCChhH-HHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHH
Q 003439 623 LLGACRIHGNMEL-GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 672 (820)
Q Consensus 623 ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~ 672 (820)
++..+...|+.++ +.++++++++++|+++... ++..+.+.++++..
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 9999999999876 6789999999999887643 34555555555443
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=5.7e-17 Score=184.11 Aligned_cols=150 Identities=13% Similarity=0.111 Sum_probs=128.8
Q ss_pred CCcHHHHHHHHHHhhcCCChhHHHHHhccCC-------CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHH
Q 003439 175 EWDVFVAASLLHMYCRFGLANVARKLFDDMP-------VRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITV 247 (820)
Q Consensus 175 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 247 (820)
..-..+||+||++||++|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 4446799999999999999999999997753 689999999999999999999999999999999999999999
Q ss_pred HhHHHhhhcCCCh-HHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCC-----CchHHHHHHHHHH
Q 003439 248 ASILPVCARSDNI-LSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMER-----DVVSWNSIIAAYE 321 (820)
Q Consensus 248 ~~ll~a~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----d~~~~~~li~~~~ 321 (820)
+++|.++++.|+. +.|.+++++|.+.|+.||..+|+.++..+.+.+-++...+++..+.-+ .+.+.+.|...|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999985 789999999999999999999999999888877666666665555321 2334455666676
Q ss_pred hCC
Q 003439 322 QSN 324 (820)
Q Consensus 322 ~~g 324 (820)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 655
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.65 E-value=6.1e-15 Score=152.65 Aligned_cols=246 Identities=13% Similarity=0.055 Sum_probs=201.7
Q ss_pred HHHHHHcCChHHHHHHHHhhhhcCCCCCCc--ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 003439 419 ITGYAQNGLASEAIEVFQMMEECNEINPNQ--GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC 496 (820)
Q Consensus 419 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 496 (820)
|.-....|++.+|+..+++... ..|+. .....+..++...|+++.|...++. .-.|+...+..+...|.+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence 3445678999999999988754 55654 3445677899999999999876543 2356777888999999999
Q ss_pred CCHHHHHHHHhhCC-----CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 003439 497 GRIDDAMSLFYQVP-----RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRY 571 (820)
Q Consensus 497 g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 571 (820)
|+.++|.+.++++. +.+...+..+...|.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999864 23455577788999999999999999987 35667888899999999999999999
Q ss_pred HHHhHHhhCCCCChhH---HHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003439 572 FHMMQEEFGIKPHLKH---YGCMVDLFGRAGHLGMAHNFIQNM--PVRPDASIWGALLGACRIHGNMELGAVASDRLFEV 646 (820)
Q Consensus 572 ~~~m~~~~g~~p~~~~---~~~li~~~~~~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 646 (820)
++.+.+. .|+... ..+++..+...|++++|..+|+++ ..+.+..+|+.+..++...|++++|+..+++++++
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999865 465422 123445555669999999999988 23456779999999999999999999999999999
Q ss_pred CCCCcchHHhHHHHhhhcCCcch-HHHHHHHHHhC
Q 003439 647 DSENVGYYVLMSNIYANVGKWEG-VDEVRSLARDR 680 (820)
Q Consensus 647 ~p~~~~~~~~l~~~y~~~g~~~~-A~~~~~~m~~~ 680 (820)
+|+++.++..++.++...|++++ +.++++++.+.
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999987 56888888765
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.64 E-value=4.6e-15 Score=156.42 Aligned_cols=257 Identities=9% Similarity=-0.048 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCC-CcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 003439 414 SWNTLITGYAQNGLASEAIEVFQMMEECNEINP-NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 492 (820)
Q Consensus 414 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 492 (820)
.|..+...+...|++++|+.+|+++.+ ..| +...+..+...+...|++++|.+.++.+.+.. +.+...+..+...
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQ---AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 344455555556666666666666554 223 23344445555556666666666666655543 2245566667777
Q ss_pred HHhcCCHHHHHHHHhhCC---CCCccccchH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCChhHHHH
Q 003439 493 YGKCGRIDDAMSLFYQVP---RSSSVPWNAI--------------IS-CHGIHGQGDKALNFFRQMLDEGVRPDHITFVS 554 (820)
Q Consensus 493 y~~~g~~~~A~~~~~~~~---~~~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 554 (820)
|.+.|++++|.+.|+++. +.+...+..+ .. .+...|++++|++.++++.+.. +.+..++..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 777777777777776654 2222223332 22 3778899999999999999853 335678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGN 632 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 632 (820)
+...+...|++++|.++++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999998854 2335678999999999999999999999987 3334 57799999999999999
Q ss_pred hhHHHHHHHHHhccCCC------------CcchHHhHHHHhhhcCCcchHHHHHHHH
Q 003439 633 MELGAVASDRLFEVDSE------------NVGYYVLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 633 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
+++|...+++++++.|+ +...+..++.+|...|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999998 6888999999999999999999887654
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=2.3e-16 Score=179.29 Aligned_cols=132 Identities=15% Similarity=0.137 Sum_probs=116.5
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH
Q 003439 479 LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-------RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHIT 551 (820)
Q Consensus 479 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 551 (820)
...-..+||+||++|+++|++++|.++|++|. .+|+++||+||.||++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997653 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 003439 552 FVSLLTACSHSGL-VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 611 (820)
Q Consensus 552 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m 611 (820)
|++||+++++.|+ .++|.++|++|.++ |+.||..+|++++....|.+-++...++...+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999997 57899999999977 99999999999999888877666666554444
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.61 E-value=6.2e-14 Score=147.66 Aligned_cols=264 Identities=11% Similarity=0.003 Sum_probs=151.5
Q ss_pred CchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHH
Q 003439 309 DVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVV 388 (820)
Q Consensus 309 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li 388 (820)
+...|..+...+.+.|++++|+.+|+++.+. .+.+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------------------------------------~~~~~~~~~~l~ 62 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA-------------------------------------APEREEAWRSLG 62 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------------CTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------------------------------------CCCCHHHHHHHH
Confidence 3445667777788888888888888887664 233444555566
Q ss_pred HHHHhcCCHHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHH----------
Q 003439 389 DMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSIL---------- 455 (820)
Q Consensus 389 ~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll---------- 455 (820)
..|.+.|++++|...|+... ..+..+|..+...|...|++++|++.|+++.. ..|+.......+
T Consensus 63 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 139 (327)
T 3cv0_A 63 LTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL---SQPQYEQLGSVNLQADVDIDDL 139 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TSTTTTTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCccHHHHHHHhHHHHHHHHH
Confidence 66666677777766666543 33566777888888888888888888888877 344433322222
Q ss_pred ----H--HhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCC
Q 003439 456 ----P--AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQ 529 (820)
Q Consensus 456 ----~--a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 529 (820)
. .+...|++++|..+++.+.+... .+..+ |..+...|...|+
T Consensus 140 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~-------------------------------~~~la~~~~~~~~ 187 (327)
T 3cv0_A 140 NVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQL-------------------------------HASLGVLYNLSNN 187 (327)
T ss_dssp ------CCTTSHHHHHHHHHHHHHHHHHST-TCHHH-------------------------------HHHHHHHHHHTTC
T ss_pred HHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHH-------------------------------HHHHHHHHHHhcc
Confidence 1 14444555555555555544432 13344 4444444555555
Q ss_pred hHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 003439 530 GDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFI 608 (820)
Q Consensus 530 ~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~ 608 (820)
+++|++.++++.+. .| +..++..+...+...|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.+
T Consensus 188 ~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 263 (327)
T 3cv0_A 188 YDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQL 263 (327)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 55555555555543 23 2345555555555566666666655555432 1123445555556666666666666655
Q ss_pred HhC-CCCCC-------------HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 003439 609 QNM-PVRPD-------------ASIWGALLGACRIHGNMELGAVASDRLFEVDS 648 (820)
Q Consensus 609 ~~m-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 648 (820)
+++ ...|+ ..+|..+..++...|+.++|...++++++..|
T Consensus 264 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 264 VRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 554 12222 44666666666777777777666665555443
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=4.4e-13 Score=149.48 Aligned_cols=385 Identities=11% Similarity=-0.017 Sum_probs=201.9
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHC-----C--CCC-ChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHH
Q 003439 209 SGSWNAMISGYCQSGNAVEALDILDEMRLE-----G--VSM-DPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLF 280 (820)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g--~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 280 (820)
...||.|-..+...|++++|++.|++..+. + ..| ...+|..+..++...|++++|...++.+.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~------ 124 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC------ 124 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh------
Confidence 456888888889999999999998876431 0 111 12344444444444555555544444433210
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhccCC----CCchHHHHHHHHHHh--CCChhhHHHHHHHHHHcCCCCCcc-hHHHHHH
Q 003439 281 VSNNLINMYAKFGMMRHALRVFDQMME----RDVVSWNSIIAAYEQ--SNDPITAHGFFTTMQQAGIQPDLL-TLVSLTS 353 (820)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~ 353 (820)
..... ....+++.+..++.. .+++++|++.|++..+. .|+.. .+..+..
T Consensus 125 ----------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~ 180 (472)
T 4g1t_A 125 ----------------------EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAI 180 (472)
T ss_dssp ----------------------HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred ----------------------HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 00011 012233333333333 33466666666666553 34332 2222222
Q ss_pred H---HHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHh----cCCHHHHHHHHhcCC---CCCchHHHHHHHHHH
Q 003439 354 I---VAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAK----LGIINSACAVFEGLP---VKDVISWNTLITGYA 423 (820)
Q Consensus 354 a---~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~ 423 (820)
+ +...++.+.+.+.+..+++.. +.+..++..+...+.+ .|+.++|.+.++... ..+...|..+...|.
T Consensus 181 ~~~~l~~~~~~~~al~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~ 258 (472)
T 4g1t_A 181 ASYRLDNWPPSQNAIDPLRQAIRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYR 258 (472)
T ss_dssp HHHHHHHSCCCCCTHHHHHHHHHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHhhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 2 233445555666666655553 4444455444444433 456677777776543 345667888888888
Q ss_pred HcCChHHHHHHHHhhhhcCCCCCCccc-HhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 003439 424 QNGLASEAIEVFQMMEECNEINPNQGT-YVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA 502 (820)
Q Consensus 424 ~~g~~~~A~~l~~~m~~~~g~~pd~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 502 (820)
..|++++|+..|++..+ ..|+... +..+...+...+. . .... ............+..+.|
T Consensus 259 ~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~y~~~~~-----~----~~~~-------~~~~~~~~~~~~~~~~~A 319 (472)
T 4g1t_A 259 RKDEPDKAIELLKKALE---YIPNNAYLHCQIGCCYRAKVF-----Q----VMNL-------RENGMYGKRKLLELIGHA 319 (472)
T ss_dssp HTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHH-----H----HHHC-------------CHHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHHHH---hCCChHHHHHHHHHHHHHHHH-----H----hhhH-------HHHHHHHHHHHHhhHHHH
Confidence 89999999999988877 5665433 2222222211100 0 0000 000011111122345677
Q ss_pred HHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----HHHHHHH-HHHhcCCHHHHHHHHHH
Q 003439 503 MSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI----TFVSLLT-ACSHSGLVSEGQRYFHM 574 (820)
Q Consensus 503 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~-a~~~~g~~~~a~~~~~~ 574 (820)
...|++.. +.+...|..+...|...|++++|++.|++.++. .|+.. .+..+.. ...+.|+.++|++.|.+
T Consensus 320 ~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~k 397 (472)
T 4g1t_A 320 VAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK--ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIE 397 (472)
T ss_dssp HHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77776654 556677899999999999999999999999985 44432 2333332 34578999999999988
Q ss_pred hHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 575 MQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 575 m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
.. .+.|+....... .+.+.+++++. ...| +..+|..|...+...|++++|++.|++++++.|.++.
T Consensus 398 al---~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 398 GV---KINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp HH---HSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------
T ss_pred HH---hcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 77 356665333222 23334444433 2233 5669999999999999999999999999999998887
Q ss_pred hHHhHH
Q 003439 653 YYVLMS 658 (820)
Q Consensus 653 ~~~~l~ 658 (820)
+..-++
T Consensus 466 a~~~~G 471 (472)
T 4g1t_A 466 ASSWNG 471 (472)
T ss_dssp ------
T ss_pred HhhcCC
Confidence 765554
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=1.8e-13 Score=135.07 Aligned_cols=193 Identities=14% Similarity=0.064 Sum_probs=155.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHH
Q 003439 480 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSL 555 (820)
Q Consensus 480 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l 555 (820)
+++...+..+...+.+.|++++|...|++.. +.+...|..+...+.+.|++++|+..|++.++ +.|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 3456677888888999999999999998765 45566788899999999999999999999999 46754 578888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 003439 556 LTACSHS-----------GLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGA 622 (820)
Q Consensus 556 l~a~~~~-----------g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ 622 (820)
..++... |++++|...++...+. .| +...+..+..+|...|++++|++.|++. ....+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8899999 9999999999998853 55 4678889999999999999999999987 22267889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHH
Q 003439 623 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 623 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888764
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.7e-13 Score=137.35 Aligned_cols=224 Identities=13% Similarity=0.043 Sum_probs=154.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 003439 413 ISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDM 492 (820)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 492 (820)
..|..+...+...|++++|+..|++..+ .. ++...+..+...+...|++++|...+..+++.....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~-~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----------- 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWE-LH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM----------- 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH-hh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-----------
Confidence 3566666666777777777777776665 32 444444445555555555555555554444321100
Q ss_pred HHhcCCHHHHHHHHhhCCCCC----ccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 003439 493 YGKCGRIDDAMSLFYQVPRSS----SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEG 568 (820)
Q Consensus 493 y~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 568 (820)
.++ ...|..+...|...|++++|++.|+++.+ +.|+. ..+...|++++|
T Consensus 72 ------------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a 124 (258)
T 3uq3_A 72 ------------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKE 124 (258)
T ss_dssp ------------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHH
T ss_pred ------------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHH
Confidence 001 24455666677777777777777777777 34553 345566778888
Q ss_pred HHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 003439 569 QRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVR-PDASIWGALLGACRIHGNMELGAVASDRLFE 645 (820)
Q Consensus 569 ~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 645 (820)
.+.++.+.. ..| +...+..+...|.+.|++++|.+.++++ ... .+..+|..+...+...|++++|+..++++++
T Consensus 125 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 125 LKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888877764 233 3466777888888888888888888876 223 3567888888889999999999999999999
Q ss_pred cCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 646 VDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 646 ~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+.|+++..+..++.+|...|++++|...++++.+.
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99988888999999999999999999988887754
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=5.6e-13 Score=134.96 Aligned_cols=240 Identities=11% Similarity=-0.018 Sum_probs=171.8
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhcCCC--CCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcc-cHhhHHH
Q 003439 380 DVIIGNAVVDMYAKLGIINSACAVFEGLPV--KDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG-TYVSILP 456 (820)
Q Consensus 380 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~~~ll~ 456 (820)
....+..+...|.+.|++++|...|+.... .+...|..+...|...|++++|+..|++..+ +.|+.. .+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~----- 75 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVE---QGREMRADY----- 75 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHHTTCCH-----
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCcccccch-----
Confidence 356778899999999999999999976532 6788899999999999999999999999877 333220 00
Q ss_pred HhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHH
Q 003439 457 AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNF 536 (820)
Q Consensus 457 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 536 (820)
.....++..+...|.+.|++++|...|++....+.. ...+...|++++|++.
T Consensus 76 -----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 76 -----------------------KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKK 127 (258)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHH
Confidence 001223344444455555555555555444311100 2345566777788888
Q ss_pred HHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 003439 537 FRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVR 614 (820)
Q Consensus 537 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~ 614 (820)
++++.. ..|+. ..+..+...+...|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...
T Consensus 128 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 128 AEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 888777 45543 46777788888888888888888888754 2335677888888888899999998888876 333
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccC------CCCcchHHhHHH
Q 003439 615 P-DASIWGALLGACRIHGNMELGAVASDRLFEVD------SENVGYYVLMSN 659 (820)
Q Consensus 615 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 659 (820)
| +..+|..+...+...|+.++|...+++++++. |++...+..|..
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 4 46688899999999999999999999999988 777666665554
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.48 E-value=8.2e-13 Score=135.15 Aligned_cols=175 Identities=12% Similarity=0.029 Sum_probs=92.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHh
Q 003439 486 ATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSH 561 (820)
Q Consensus 486 ~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~ 561 (820)
+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+. .|+. ..+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHH
Confidence 3444444445555555555444433 223334455555555555555555555555442 3332 233333313333
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHHcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHH
Q 003439 562 SGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGH---LGMAHNFIQNM----PVRPD------ASIWGALLGAC 627 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~---~~eA~~~~~~m----~~~p~------~~~~~~ll~~~ 627 (820)
.+++++|.+.|+.+.+. .|+ ...+..+..++...|+ .++|...++++ ...|+ ..+|..+...|
T Consensus 155 ~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231 (272)
T ss_dssp TTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 34555555555555532 222 3444445555555554 44444444433 11122 24677788888
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcC
Q 003439 628 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 665 (820)
Q Consensus 628 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 665 (820)
...|++++|+..++++++++|+++.+...+..+....+
T Consensus 232 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 232 TINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 99999999999999999999999888887776655444
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.48 E-value=6.3e-13 Score=136.15 Aligned_cols=240 Identities=8% Similarity=-0.094 Sum_probs=184.6
Q ss_pred cCChHHHHHHHHhhhhcCCC-C-C-CcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 003439 425 NGLASEAIEVFQMMEECNEI-N-P-NQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDD 501 (820)
Q Consensus 425 ~g~~~~A~~l~~~m~~~~g~-~-p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 501 (820)
.|++++|+..|+++.+ ... . | +..++..+...+...|++++|...+..+++... .+..++..+...|...|++++
T Consensus 18 ~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 18 TLQQEVILARMEQILA-SRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CHHHHHHHHHHHHHHT-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHh-cccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 4677788888887776 321 1 1 345566677777788888888888888777643 357788888999999999999
Q ss_pred HHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 003439 502 AMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 578 (820)
Q Consensus 502 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 578 (820)
|.+.|++.. +.+...|..+...|...|++++|++.|+++.+ ..|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999998776 45667789999999999999999999999998 4677766666666778889999999999887754
Q ss_pred hCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 579 FGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-----ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 579 ~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
.+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++++|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23344444 4777888888999999999876 33332 468899999999999999999999999999997755
Q ss_pred hHHhHHHHhhhcCCcchHHHHH
Q 003439 653 YYVLMSNIYANVGKWEGVDEVR 674 (820)
Q Consensus 653 ~~~~l~~~y~~~g~~~~A~~~~ 674 (820)
.+ +.++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 56778888888887665
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.42 E-value=2e-11 Score=134.69 Aligned_cols=365 Identities=10% Similarity=0.022 Sum_probs=183.6
Q ss_pred CCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCH---HHHHHHHhccCCCCchHHHHHHHHHHhCC-----Chhh
Q 003439 257 SDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMM---RHALRVFDQMMERDVVSWNSIIAAYEQSN-----DPIT 328 (820)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~m~~~d~~~~~~li~~~~~~g-----~~~~ 328 (820)
.|++++|.+++....+.| +...+..|..+|...|+. ++|...|+...+.+...+..|...+...| ++++
T Consensus 16 ~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~ 92 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHE 92 (452)
T ss_dssp HHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHH
Confidence 344444444444444444 122223344445555666 77777777776666666777766555554 6678
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcC----CHHHHHHHH
Q 003439 329 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLG----IINSACAVF 404 (820)
Q Consensus 329 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g----~~~~A~~~f 404 (820)
|+.+|++..+.|.. ..+..+-..+...+..+.+...+..+.+.. -..+......|..+|...+ ..+.+..++
T Consensus 93 A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~-~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~ 168 (452)
T 3e4b_A 93 AESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQ-AAGYPEAGLAQVLLYRTQGTYDQHLDDVERIC 168 (452)
T ss_dssp HHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHH-HHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 88888888776532 255555555555554444433333333222 1223444555555565555 333344444
Q ss_pred hcCCCCCchHHHHHHHHHHHcC---ChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCC
Q 003439 405 EGLPVKDVISWNTLITGYAQNG---LASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF 481 (820)
Q Consensus 405 ~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 481 (820)
+.....+..++..|...|.+.| +.++|++.|++..+ .|. +
T Consensus 169 ~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~------------------------------------~g~-~ 211 (452)
T 3e4b_A 169 KAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS------------------------------------RGT-V 211 (452)
T ss_dssp HHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------------------------TTC-S
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH------------------------------------CCC-H
Confidence 4444444445555555555555 55555555555444 332 2
Q ss_pred chhHHHHHHHHHHhc----CCHHHHHHHHhhCCCCCccccchHHHH-H--HhcCChHHHHHHHHHHHHcCCCCChhHHHH
Q 003439 482 DVFVATCLVDMYGKC----GRIDDAMSLFYQVPRSSSVPWNAIISC-H--GIHGQGDKALNFFRQMLDEGVRPDHITFVS 554 (820)
Q Consensus 482 ~~~~~~~li~~y~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 554 (820)
+...+..|..+|... ++.++|.+.|++..+.+...+..|... | ...+++++|++.|++..+.| +...+..
T Consensus 212 ~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~ 288 (452)
T 3e4b_A 212 TAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELL 288 (452)
T ss_dssp CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 222223444444333 466666666665553333445555554 3 34677888888888877765 5556666
Q ss_pred HHHHHHhcC-----CHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003439 555 LLTACSHSG-----LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR----AGHLGMAHNFIQNMPVRPDASIWGALLG 625 (820)
Q Consensus 555 ll~a~~~~g-----~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~m~~~p~~~~~~~ll~ 625 (820)
|...|. .| ++++|.++|+... .-+...+..|..+|.. ..+.++|.+.|++.-...+......|..
T Consensus 289 Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~ 362 (452)
T 3e4b_A 289 LGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQ 362 (452)
T ss_dssp HHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 666665 44 7888888886554 3345666667777765 3388888888877632334445555665
Q ss_pred HHHh----cCChhHHHHHHHHHhccCCCCcchHHhHHHHhh--hcCCcchHHHHHHH
Q 003439 626 ACRI----HGNMELGAVASDRLFEVDSENVGYYVLMSNIYA--NVGKWEGVDEVRSL 676 (820)
Q Consensus 626 ~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~--~~g~~~~A~~~~~~ 676 (820)
.|.. ..|.++|...++++.+..+.+ ....+..+.. ..++.++|.++.++
T Consensus 363 ~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 363 LFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp HHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5553 347788888888887766533 2333333322 22344455554444
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.41 E-value=6e-12 Score=127.09 Aligned_cols=195 Identities=9% Similarity=-0.051 Sum_probs=146.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHH
Q 003439 483 VFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTA 558 (820)
Q Consensus 483 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a 558 (820)
...+..+...|...|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 3455666667777777777777776654 344556777777788888888888888888774 34 45577777778
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMEL 635 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 635 (820)
+...|++++|.++++.+.. .+..| +...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888887764 22445 3466777788888888888888888776 2233 46678888888888888888
Q ss_pred HHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 636 GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 636 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
|...++++++..|++...+..++.+|...|++++|.++++++.+.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888765
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.40 E-value=3.9e-11 Score=122.86 Aligned_cols=223 Identities=12% Similarity=-0.022 Sum_probs=148.0
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 003439 411 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 490 (820)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 490 (820)
+..++..+...|...|++++|++.|++..+ .+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~--------------------------------------~~~a~~~lg 45 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-LK--------------------------------------ENSGCFNLG 45 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TT--------------------------------------CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CC--------------------------------------CHHHHHHHH
Confidence 445555666666666666666666666554 11 223333444
Q ss_pred HHHHh----cCCHHHHHHHHhhCC-CCCccccchHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 003439 491 DMYGK----CGRIDDAMSLFYQVP-RSSSVPWNAIISCHGI----HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 561 (820)
Q Consensus 491 ~~y~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 561 (820)
.+|.. .|++++|.+.|++.. ..+...|..+...|.. .+++++|++.|++..+.+ +...+..+...+..
T Consensus 46 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 46 VLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHD 122 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHc
Confidence 44444 555555555555443 2234445555555555 677777777777777653 55666777777777
Q ss_pred ----cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 003439 562 ----SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR----AGHLGMAHNFIQNMPVRPDASIWGALLGACRI---- 629 (820)
Q Consensus 562 ----~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~---- 629 (820)
.+++++|.++|+...+. + +...+..+..+|.+ .+++++|.+.+++.-...+...+..+...+..
T Consensus 123 ~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 123 GKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp CSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred CCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 77888888888777643 2 45566677777777 77888888888766222356677777888888
Q ss_pred cCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh----cCCcchHHHHHHHHHhCC
Q 003439 630 HGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN----VGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 630 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~~~ 681 (820)
.+++++|+..++++.+.+| +..+..|+.+|.. .|++++|.+.+++..+.|
T Consensus 199 ~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 199 TKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8888888888888887765 6677788888888 888888888888887765
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.40 E-value=1.2e-11 Score=122.08 Aligned_cols=196 Identities=14% Similarity=0.063 Sum_probs=148.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLT 557 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~ 557 (820)
+...+..+...|...|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+. .| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 34566667777777788888877777654 344556777778888888888888888888774 34 4557777778
Q ss_pred HHHhc-CCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 003439 558 ACSHS-GLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNM 633 (820)
Q Consensus 558 a~~~~-g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 633 (820)
.+... |++++|.++++.+.+ .+..|+ ...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 88888 888888888888775 223343 466777888888888888888888776 2333 466788888888888888
Q ss_pred hHHHHHHHHHhccCC-CCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 634 ELGAVASDRLFEVDS-ENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 634 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
++|...++++++..| ++...+..++.++...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 888888888888888 88888888888888888888888888887654
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.39 E-value=4.3e-12 Score=127.15 Aligned_cols=195 Identities=11% Similarity=0.086 Sum_probs=131.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLT 557 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~ 557 (820)
....+..+...+.+.|++++|...|+++. +.+...|..+...|...|++++|++.|+++.+. .| +..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHHH
Confidence 34455556666677777777777776654 334555677777777788888888888887774 34 4557777777
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhH
Q 003439 558 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVR-PDASIWGALLGACRIHGNMEL 635 (820)
Q Consensus 558 a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~ 635 (820)
.+...|++++|.++++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...|..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888877754 2235567777788888888888888888776 222 356678888888888888888
Q ss_pred HHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 636 GAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 636 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
|+..++++++..|+++..+..++.+|...|++++|...++++.+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 888888888888888888888888888888888888888887765
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.38 E-value=6.2e-12 Score=126.01 Aligned_cols=179 Identities=10% Similarity=0.030 Sum_probs=135.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003439 483 VFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTAC 559 (820)
Q Consensus 483 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 559 (820)
...+..+...|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 135 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVL 135 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4455556666666666666666666554 3345567777777888888888888888888753 33556778888888
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHH
Q 003439 560 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVR-PDASIWGALLGACRIHGNMELGA 637 (820)
Q Consensus 560 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~ 637 (820)
...|++++|.++++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+..+|..+...+...|+.++|.
T Consensus 136 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 213 (243)
T 2q7f_A 136 VKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL 213 (243)
T ss_dssp HHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH
Confidence 9999999999999888754 2335678888899999999999999999876 223 35678999999999999999999
Q ss_pred HHHHHHhccCCCCcchHHhHHHHhhhc
Q 003439 638 VASDRLFEVDSENVGYYVLMSNIYANV 664 (820)
Q Consensus 638 ~~~~~~~~~~p~~~~~~~~l~~~y~~~ 664 (820)
..+++++++.|++...+..++.+....
T Consensus 214 ~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 214 EMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 999999999999988887776655443
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.38 E-value=4.1e-12 Score=135.97 Aligned_cols=243 Identities=9% Similarity=0.064 Sum_probs=185.3
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCc-ccHhhHHHHhhccCC-hhHHHHHHHHHHHhCCCCchhHHHHH
Q 003439 412 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYSHVGA-LRQGIKIHARVIKNCLCFDVFVATCL 489 (820)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~a~~~~~~-~~~a~~i~~~~~~~g~~~~~~~~~~l 489 (820)
...|+.+...+.+.|++++|++.|++... +.|+. ..|..+...+...|+ +++|...++.+++... .+...|+.+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~---l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~ 172 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIE---LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHH---hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHH
Confidence 34566777777778888888888888776 56654 345566666777775 8888888888777653 356778888
Q ss_pred HHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHh-cCC
Q 003439 490 VDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSH-SGL 564 (820)
Q Consensus 490 i~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~ 564 (820)
..+|.+.|++++|...|+++. ..+...|..+..++...|++++|+..|+++++ +.|+ ...|+.+..++.. .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCc
Confidence 888888888888888888776 55667788888889999999999999999998 4564 4688888888888 566
Q ss_pred HHHH-----HHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcC--CHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC----
Q 003439 565 VSEG-----QRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAG--HLGMAHNFIQNMPVRPD-ASIWGALLGACRIHG---- 631 (820)
Q Consensus 565 ~~~a-----~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g--~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g---- 631 (820)
.++| ++.++...+ +.| +...|..+..+|.+.| ++++|.+.++++...|+ ...+..|...|...|
T Consensus 251 ~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 477777764 355 4567888888888888 68899988888755554 558888888888764
Q ss_pred ----C-hhHHHHHHHHH-hccCCCCcchHHhHHHHhhh
Q 003439 632 ----N-MELGAVASDRL-FEVDSENVGYYVLMSNIYAN 663 (820)
Q Consensus 632 ----~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~y~~ 663 (820)
+ .++|+.+++++ .+++|.....|..++..+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2 58899999999 89999888888877765543
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.38 E-value=3.7e-11 Score=121.24 Aligned_cols=205 Identities=13% Similarity=0.047 Sum_probs=145.7
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 003439 412 VISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVD 491 (820)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 491 (820)
...|..+...|...|++++|++.|+++.+ ..|+ +...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~~~----------------------------------~~~~~~~la~ 79 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALE---IDPS----------------------------------SADAHAALAV 79 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHH---HCTT----------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCC----------------------------------hHHHHHHHHH
Confidence 45566666777777777777777777665 2222 2334455555
Q ss_pred HHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHH
Q 003439 492 MYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSE 567 (820)
Q Consensus 492 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 567 (820)
.|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+.+..|+ ...+..+..++...|++++
T Consensus 80 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 80 VFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence 5555666666666655543 23444566666777777777777777777776434554 3467777888888899999
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 003439 568 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFE 645 (820)
Q Consensus 568 a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 645 (820)
|.++++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+.++|...++++++
T Consensus 160 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 160 AKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99988888754 1234677888888999999999999998876 3334 566888888889999999999999999999
Q ss_pred cCCCCcchHH
Q 003439 646 VDSENVGYYV 655 (820)
Q Consensus 646 ~~p~~~~~~~ 655 (820)
+.|+++....
T Consensus 238 ~~p~~~~~~~ 247 (252)
T 2ho1_A 238 LYPGSLEYQE 247 (252)
T ss_dssp HCTTSHHHHH
T ss_pred HCCCCHHHHH
Confidence 9998776544
No 50
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.36 E-value=2.7e-12 Score=140.17 Aligned_cols=260 Identities=12% Similarity=0.029 Sum_probs=170.8
Q ss_pred HHHHHHHcCChHHHHHHHHhhhhcCCCCCCc-----ccHhhHHHHhhccCChhHHHHHHHHHHHh----CC-CCchhHHH
Q 003439 418 LITGYAQNGLASEAIEVFQMMEECNEINPNQ-----GTYVSILPAYSHVGALRQGIKIHARVIKN----CL-CFDVFVAT 487 (820)
Q Consensus 418 li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~-~~~~~~~~ 487 (820)
+...+...|++++|+..|++..+ ..|+. ..+..+...+...|++++|...++.+++. +. ......+.
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQ---AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHH---hcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 33444555555555555555554 22332 23444444455555555555555544332 11 11234556
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC---------CccccchHHHHHHhcCC-----------------hHHHHHHHHHHH
Q 003439 488 CLVDMYGKCGRIDDAMSLFYQVPRS---------SSVPWNAIISCHGIHGQ-----------------GDKALNFFRQML 541 (820)
Q Consensus 488 ~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~ 541 (820)
.+...|...|++++|...|++.... ....|..+...|...|+ +++|++.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 6666677777777777766654311 12246667777777777 788888777765
Q ss_pred Hc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 003439 542 DE----GVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKHYGCMVDLFGRAGHLGMAHNFIQNM- 611 (820)
Q Consensus 542 ~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m- 611 (820)
+. +-.|. ..++..+...+...|++++|.++++...+...-.++ ...+..+..+|...|++++|.+.+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 42 11222 236777888889999999999999887653211122 237788889999999999999998776
Q ss_pred CC---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------cchHHhHHHHhhhcCCcchHHHHHHHHH
Q 003439 612 PV---RPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN------VGYYVLMSNIYANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 612 ~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 678 (820)
.. ..+ ..+|..+...+...|++++|...+++++++.++. ...+..++.+|...|++++|...+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 11 111 4578888899999999999999999998875433 3477889999999999999999999887
Q ss_pred hC
Q 003439 679 DR 680 (820)
Q Consensus 679 ~~ 680 (820)
+.
T Consensus 371 ~~ 372 (411)
T 4a1s_A 371 QL 372 (411)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 51
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.35 E-value=8.8e-12 Score=135.51 Aligned_cols=262 Identities=11% Similarity=0.071 Sum_probs=161.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCc-----ccHhhHHHHhhccCChhHHHHHHHHHHHh----CCCC-chhH
Q 003439 416 NTLITGYAQNGLASEAIEVFQMMEECNEINPNQ-----GTYVSILPAYSHVGALRQGIKIHARVIKN----CLCF-DVFV 485 (820)
Q Consensus 416 ~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~~-~~~~ 485 (820)
......+...|++++|+..|++..+ ..|+. ..+..+...+...|+++.|...+..+.+. +..+ ...+
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQ---VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3344444455555555555555544 12221 23334444445555555555555443321 1111 1334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----ccccchHHHHHHhcCC--------------------hHHHHHH
Q 003439 486 ATCLVDMYGKCGRIDDAMSLFYQVPR-----SS----SVPWNAIISCHGIHGQ--------------------GDKALNF 536 (820)
Q Consensus 486 ~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l 536 (820)
+..+...|...|++++|...|++... .+ ...|..+...|...|+ +++|++.
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 55566666666776666666655431 11 2246666667777777 7777777
Q ss_pred HHHHHHc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHHcCCHHHHHHH
Q 003439 537 FRQMLDE----GVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKHYGCMVDLFGRAGHLGMAHNF 607 (820)
Q Consensus 537 ~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~eA~~~ 607 (820)
+++..+. +-.|. ..++..+...+...|++++|.+.++...+...-.++ ...+..+...|...|++++|.+.
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 7766542 11121 236677777888888888888888877643222222 23677788888888888888888
Q ss_pred HHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------cchHHhHHHHhhhcCCcchHHHH
Q 003439 608 IQNM----PVRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN------VGYYVLMSNIYANVGKWEGVDEV 673 (820)
Q Consensus 608 ~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~A~~~ 673 (820)
+++. +..++ ..++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+.
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8765 11112 4477788888888999999999998888765433 44677888899999999999988
Q ss_pred HHHHHhC
Q 003439 674 RSLARDR 680 (820)
Q Consensus 674 ~~~m~~~ 680 (820)
+++..+.
T Consensus 330 ~~~al~~ 336 (406)
T 3sf4_A 330 AEKHLEI 336 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887653
No 52
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.35 E-value=1.2e-11 Score=130.31 Aligned_cols=260 Identities=11% Similarity=0.056 Sum_probs=177.5
Q ss_pred HHHHHHHcCChHHHHHHHHhhhhcCCCCCCc-----ccHhhHHHHhhccCChhHHHHHHHHHHHh----CCC-CchhHHH
Q 003439 418 LITGYAQNGLASEAIEVFQMMEECNEINPNQ-----GTYVSILPAYSHVGALRQGIKIHARVIKN----CLC-FDVFVAT 487 (820)
Q Consensus 418 li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~-~~~~~~~ 487 (820)
....+...|++++|+..|+++.+ ..|+. ..+..+...+...|+++.|.+.+..+.+. +.. ....++.
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQ---VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHh---hCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 34445556666666666666655 23332 33444555556666666666665554332 111 1244566
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC-----CCC----ccccchHHHHHHhcCC--------------------hHHHHHHHH
Q 003439 488 CLVDMYGKCGRIDDAMSLFYQVP-----RSS----SVPWNAIISCHGIHGQ--------------------GDKALNFFR 538 (820)
Q Consensus 488 ~li~~y~~~g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~ 538 (820)
.+...|...|++++|...|++.. ..+ ...|..+...|...|+ +++|++.++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 67777777888888777776654 112 2246677777788888 888888887
Q ss_pred HHHHc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHH
Q 003439 539 QMLDE----GVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKHYGCMVDLFGRAGHLGMAHNFIQ 609 (820)
Q Consensus 539 ~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~eA~~~~~ 609 (820)
+.... +-.|. ..++..+...+...|++++|.++++...+...-.++ ...+..+...|.+.|++++|.+.++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76542 11222 236777888899999999999999887643211122 2377888899999999999999988
Q ss_pred hC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------cchHHhHHHHhhhcCCcchHHHHHH
Q 003439 610 NM----PVRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN------VGYYVLMSNIYANVGKWEGVDEVRS 675 (820)
Q Consensus 610 ~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~A~~~~~ 675 (820)
+. +..++ ..++..+...+...|++++|...+++++++.|.. ...+..++.+|...|++++|...++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 76 11122 4578888899999999999999999998875533 3367789999999999999999999
Q ss_pred HHHhC
Q 003439 676 LARDR 680 (820)
Q Consensus 676 ~m~~~ 680 (820)
++.+.
T Consensus 328 ~a~~~ 332 (338)
T 3ro2_A 328 KHLEI 332 (338)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 98765
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.35 E-value=1.5e-11 Score=131.66 Aligned_cols=224 Identities=11% Similarity=0.099 Sum_probs=189.3
Q ss_pred cHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhhCC---CCCccccchHHHHHH
Q 003439 450 TYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR-IDDAMSLFYQVP---RSSSVPWNAIISCHG 525 (820)
Q Consensus 450 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~~ 525 (820)
.+..+...+...|++++|.+.++.+++... .+..+++.+...|.+.|+ +++|+..|++.. +.+...|+.+..++.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 455566677888999999999999998763 367788999999999997 999999999876 566778999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHH-cCCHH
Q 003439 526 IHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGR-AGHLG 602 (820)
Q Consensus 526 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~-~g~~~ 602 (820)
..|++++|+..|+++++ +.|+ ...|..+..++...|++++|++.++.+.+. .| +...|+.+..+|.+ .|..+
T Consensus 178 ~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 178 WLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999 5675 568999999999999999999999999854 45 56789999999999 67657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcC--------
Q 003439 603 MA-----HNFIQNM-PVRP-DASIWGALLGACRIHG--NMELGAVASDRLFEVDSENVGYYVLMSNIYANVG-------- 665 (820)
Q Consensus 603 eA-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-------- 665 (820)
+| ++.+++. .+.| +...|..+...+...| ++++|+..++++ +.+|+++..+..|+++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4677665 4455 4669999999999888 689999999998 999999999999999999975
Q ss_pred -CcchHHHHHHHH-HhC
Q 003439 666 -KWEGVDEVRSLA-RDR 680 (820)
Q Consensus 666 -~~~~A~~~~~~m-~~~ 680 (820)
.+++|.++++++ .+.
T Consensus 332 ~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 332 DILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 258899999987 443
No 54
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.35 E-value=2.6e-11 Score=133.84 Aligned_cols=343 Identities=11% Similarity=0.037 Sum_probs=200.0
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcc---hhhhhHHHHHHHhCCcCcchhHHhHHHHHHH
Q 003439 316 IIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDC---RNSRSVHGFIMRRGWFMEDVIIGNAVVDMYA 392 (820)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~---~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~ 392 (820)
+...+.+.|++++|+++|++..+.|- ...+..+-..+...|+. ++|...+....+. ++..+..|..++.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC---------------------------------CHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHH
Confidence 56667788889999999988877652 22333333444445555 6777777766532 4445555555444
Q ss_pred hcC-----CHHHHHHHHhcCCCC-CchHHHHHHHHHHHcCChHH---HHHHHHhhhhcCCCCCCcccHhhHHHHhhccCC
Q 003439 393 KLG-----IINSACAVFEGLPVK-DVISWNTLITGYAQNGLASE---AIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 463 (820)
Q Consensus 393 ~~g-----~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~ 463 (820)
..| +.++|...|+...++ +...+..|...|...+..++ +.+.+..... .| +......+...+...+.
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~-~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA-AG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH-HT---CTTHHHHHHHHHHHHTC
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCC
Confidence 444 667777777665433 45566677777766554433 3334443333 22 23344455555556565
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhhCCCC---CccccchHHHHHHhc----CChHHH
Q 003439 464 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCG---RIDDAMSLFYQVPRS---SSVPWNAIISCHGIH----GQGDKA 533 (820)
Q Consensus 464 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~----g~~~~A 533 (820)
++.+........+.-...++..+..|..+|.+.| +.++|.+.|++.... +...+..|...|... +++++|
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 5444444333333222234447777788888888 788888888766522 222235566666544 678888
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHH-H--HhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcC-----CHHHHH
Q 003439 534 LNFFRQMLDEGVRPDHITFVSLLTA-C--SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG-----HLGMAH 605 (820)
Q Consensus 534 ~~l~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g-----~~~eA~ 605 (820)
++.|++.. .| +...+..|... + ...+++++|.++|+...+. | +...+..|..+|. .| ++++|.
T Consensus 237 ~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 237 QALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 88888876 22 34455555555 3 4577888888888877643 3 5566677777776 45 888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh----cCCcchHHHHHHHH
Q 003439 606 NFIQNMPVRPDASIWGALLGACRI----HGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN----VGKWEGVDEVRSLA 677 (820)
Q Consensus 606 ~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m 677 (820)
+.|++.- ..+...+..|...|.. ..|.++|...++++.+ +.++.....|+.+|.. ..+.++|..++++.
T Consensus 308 ~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 308 AHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 8888877 5566677777766655 3378888888888766 3456777788888775 34777888888888
Q ss_pred HhCCC
Q 003439 678 RDRGL 682 (820)
Q Consensus 678 ~~~~~ 682 (820)
.+.|.
T Consensus 385 ~~~g~ 389 (452)
T 3e4b_A 385 KAQDT 389 (452)
T ss_dssp HTTCC
T ss_pred HHCCC
Confidence 77764
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.35 E-value=9.4e-11 Score=119.99 Aligned_cols=230 Identities=8% Similarity=-0.102 Sum_probs=165.9
Q ss_pred CcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCC-CchHHHHHHHHHHH----cCChHHHHHHHHhhhhcCCCCCCcccHh
Q 003439 378 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVK-DVISWNTLITGYAQ----NGLASEAIEVFQMMEECNEINPNQGTYV 452 (820)
Q Consensus 378 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~g~~pd~~t~~ 452 (820)
+.+...+..+...|.+.|++++|...|+...++ +..++..+...|.. .+++++|+..|++..+ .+ +...+.
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~~ 78 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD-LN---YSNGCH 78 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH-CC---CHHHHH
Confidence 345677888999999999999999999876644 56778888888888 8899999998888776 32 333444
Q ss_pred hHHHHhhc----cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHh--
Q 003439 453 SILPAYSH----VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGI-- 526 (820)
Q Consensus 453 ~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-- 526 (820)
.+...+.. .+++++|.+.++...+.+ +...+..+...|..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----------------------------------~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK----------------------------------YAEGCASLGGIYHDGK 124 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------------------------CHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC----------------------------------CccHHHHHHHHHHcCC
Confidence 44444444 455555555555444432 33344455555555
Q ss_pred --cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHH---
Q 003439 527 --HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH----SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR--- 597 (820)
Q Consensus 527 --~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~--- 597 (820)
.+++++|++.|++..+.+ +...+..+...+.. .+++++|.++|+...+. .+...+..+..+|.+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEG 197 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCS
T ss_pred CcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCC
Confidence 677777778888777754 45566677777777 88889999888887753 245677788888888
Q ss_pred -cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCcc
Q 003439 598 -AGHLGMAHNFIQNMPVRPDASIWGALLGACRI----HGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 598 -~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
.+++++|.+.+++.-...+...+..+...|.. .++.++|+..++++.++.|+++.
T Consensus 198 ~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 198 ATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 89999999998876212336678888888888 89999999999999999885443
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.35 E-value=4.8e-11 Score=117.69 Aligned_cols=208 Identities=13% Similarity=0.035 Sum_probs=147.7
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 003439 411 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLV 490 (820)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 490 (820)
+...|..+...+...|++++|++.|+++.+ ..|+ +...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~----------------------------------~~~~~~~l~ 49 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALK---SDPK----------------------------------NELAWLVRA 49 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTT----------------------------------CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---hCcc----------------------------------chHHHHHHH
Confidence 445566666777777777777777776665 2232 233445555
Q ss_pred HHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhc-CChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCH
Q 003439 491 DMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIH-GQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLV 565 (820)
Q Consensus 491 ~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 565 (820)
..|...|++++|.+.|+++. +.+...|..+...|... |++++|+..++++.+.+..|+ ...+..+..++...|++
T Consensus 50 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 129 (225)
T 2vq2_A 50 EIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQF 129 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH
Confidence 55666666666666665543 33445566677777777 888888888888877333444 35677788888888999
Q ss_pred HHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003439 566 SEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVR--PDASIWGALLGACRIHGNMELGAVASDR 642 (820)
Q Consensus 566 ~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 642 (820)
++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...|..+...+...|+.+.+...++.
T Consensus 130 ~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 130 GLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999988888754 1224677888888899999999999988876 223 3566777777888899999999999999
Q ss_pred HhccCCCCcchHHhH
Q 003439 643 LFEVDSENVGYYVLM 657 (820)
Q Consensus 643 ~~~~~p~~~~~~~~l 657 (820)
+.+..|+++.....+
T Consensus 208 ~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 208 LQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHCTTCHHHHHHH
T ss_pred HHHhCCCCHHHHHHh
Confidence 999999887766554
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.34 E-value=2.5e-11 Score=116.03 Aligned_cols=163 Identities=13% Similarity=0.090 Sum_probs=131.4
Q ss_pred ccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 003439 514 SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMV 592 (820)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 592 (820)
...|..+...|.+.|++++|++.|++.++ +.|+. .++..+..++.+.|++++|...+...... ...+...+..+.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 44577777788888888888888888887 45654 57778888888888999888888887753 223455677777
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchH
Q 003439 593 DLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 670 (820)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 670 (820)
..+...+++++|.+.+++. ...| +..+|..+...+...|++++|+..++++++++|+++..+..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8888888999988888776 3334 4668888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 003439 671 DEVRSLARDR 680 (820)
Q Consensus 671 ~~~~~~m~~~ 680 (820)
.+.++++.+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9999888765
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.34 E-value=6.6e-12 Score=128.45 Aligned_cols=219 Identities=11% Similarity=-0.011 Sum_probs=181.0
Q ss_pred HhhccCChhHHHHHHHHHHHhCCC---CchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCCh
Q 003439 457 AYSHVGALRQGIKIHARVIKNCLC---FDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQG 530 (820)
Q Consensus 457 a~~~~~~~~~a~~i~~~~~~~g~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 530 (820)
.....|++++|...++.+++.... .+..++..+...|...|++++|...|+++. +.+...|..+...|...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 345568899999999999886432 246788889999999999999999999876 45677899999999999999
Q ss_pred HHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 003439 531 DKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQ 609 (820)
Q Consensus 531 ~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 609 (820)
++|++.|+++++. .| +..++..+...+...|++++|.++++.+.+. .|+..........+.+.|++++|.+.++
T Consensus 94 ~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 94 DAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999995 45 4678899999999999999999999999854 5665555556666778899999999997
Q ss_pred hC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CcchHHhHHHHhhhcCCcchHHHHHHHHHhCC
Q 003439 610 NM-P-VRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE----NVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 610 ~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
+. . .+++...|. ++..+...++.++|...++++++..|. ++..+..++.+|...|++++|...++++.+..
T Consensus 169 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 169 QHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 65 2 233444444 777778888889999999999988774 36788899999999999999999999998653
No 59
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.32 E-value=3.8e-11 Score=118.23 Aligned_cols=204 Identities=14% Similarity=0.059 Sum_probs=100.6
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCc-ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHH
Q 003439 411 DVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQ-GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCL 489 (820)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l 489 (820)
+...|..+...+.+.|++++|+..|++..+ ..|+. ..+..+...+...|++++|...++.+++... .+...+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 79 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALK---ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVL 79 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 344455555555566666666666665554 33432 2333333444444444444444444444321 123344444
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 003439 490 VDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEG 568 (820)
Q Consensus 490 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 568 (820)
...|.+.+. .. .. .+...|++++|+..|++.++ +.|+ ...+..+..++...|++++|
T Consensus 80 g~~~~~~~~---------~~--~~---------~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 80 SEAYVALYR---------QA--ED---------RERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp HHHHHHHHH---------TC--SS---------HHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhhh---------hh--hh---------hcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHH
Confidence 444443300 00 00 01122666666666666666 3454 34566666666677777777
Q ss_pred HHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003439 569 QRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRL 643 (820)
Q Consensus 569 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 643 (820)
++.|++..+. . .+...+..+..+|...|++++|.+.+++. ...| +..+|..+...+...|++++|+..+++.
T Consensus 138 ~~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 138 EASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777666654 3 55666666677777777777777776665 2333 3456666666677777777777666654
No 60
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.32 E-value=1.5e-10 Score=118.07 Aligned_cols=241 Identities=11% Similarity=0.018 Sum_probs=185.3
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcc--cHhhHHHH
Q 003439 383 IGNAVVDMYAKLGIINSACAVFEGLP---VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQG--TYVSILPA 457 (820)
Q Consensus 383 ~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~--t~~~ll~a 457 (820)
+.......|.+.|++++|...|+... ..+...|..+...|.+.|++++|++.|++..+ .+..|+.. .+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHH
Confidence 34455677788888898888888754 33566888899999999999999999999887 44223221 26778888
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCccccchHHHHHHhcCChHHHH
Q 003439 458 YSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR---SSSVPWNAIISCHGIHGQGDKAL 534 (820)
Q Consensus 458 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 534 (820)
+...|++++|...+..+.+... .+..++..+...|.+.|++++|.+.|++... .+...|..+...+...+++++|+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988753 3567889999999999999999999998873 34555777772344456999999
Q ss_pred HHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC---HHHHHHHHHHhHHhhCCCCCh------hHHHHHHHHHHHcCCHHHH
Q 003439 535 NFFRQMLDEGVRPD-HITFVSLLTACSHSGL---VSEGQRYFHMMQEEFGIKPHL------KHYGCMVDLFGRAGHLGMA 604 (820)
Q Consensus 535 ~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~g~~p~~------~~~~~li~~~~~~g~~~eA 604 (820)
+.|+++.+. .|+ ...+..+..++...|+ +++|...++...+...-.|+. ..|..+...|.+.|++++|
T Consensus 163 ~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 163 SSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999994 565 4577778888888888 888999999887654444552 5788899999999999999
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHH
Q 003439 605 HNFIQNM-PVRPD-ASIWGALLGAC 627 (820)
Q Consensus 605 ~~~~~~m-~~~p~-~~~~~~ll~~~ 627 (820)
.+.++++ ...|+ ...+..+....
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhh
Confidence 9999987 44554 44555554433
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.32 E-value=1.4e-11 Score=133.82 Aligned_cols=154 Identities=12% Similarity=0.046 Sum_probs=108.2
Q ss_pred ccchHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC----hh
Q 003439 516 PWNAIISCHGIHGQGDKALNFFRQMLDEGV-RPD----HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LK 586 (820)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~----~~ 586 (820)
.|..+...|...|++++|++.+++..+... .++ ..++..+...+...|++++|..+++...+...-.++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 355566666677777777777776665210 112 126777777888888888888888877643211111 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC------CCcc
Q 003439 587 HYGCMVDLFGRAGHLGMAHNFIQNM----PVRPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDS------ENVG 652 (820)
Q Consensus 587 ~~~~li~~~~~~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~ 652 (820)
.+..+...|.+.|++++|.+.+++. +..++ ..+|..+...+...|++++|...+++++++.+ ....
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 348 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELT 348 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhH
Confidence 6778888889999999998888766 11122 45788888999999999999999999988633 3355
Q ss_pred hHHhHHHHhhhcCCcch
Q 003439 653 YYVLMSNIYANVGKWEG 669 (820)
Q Consensus 653 ~~~~l~~~y~~~g~~~~ 669 (820)
.+..++.+|...|+...
T Consensus 349 ~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 349 ARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhhHhHH
Confidence 67788899988887643
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.30 E-value=7.3e-12 Score=139.20 Aligned_cols=191 Identities=8% Similarity=-0.024 Sum_probs=159.5
Q ss_pred CchhHHHHHHHHHHhcCCH-HHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 003439 481 FDVFVATCLVDMYGKCGRI-DDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLL 556 (820)
Q Consensus 481 ~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 556 (820)
.+...+..+...|...|++ ++|.+.|++.. +.+...|..+...|...|++++|++.|++.++ +.|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 3556666777777777777 77777777654 34456688888888888999999999999888 568877888888
Q ss_pred HHHHhc---------CCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHc--------CCHHHHHHHHHhC-CCCC--
Q 003439 557 TACSHS---------GLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRA--------GHLGMAHNFIQNM-PVRP-- 615 (820)
Q Consensus 557 ~a~~~~---------g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~--------g~~~eA~~~~~~m-~~~p-- 615 (820)
.++... |++++|.+.+++..+. .| +...|..+..+|.+. |++++|.+.|++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 888888 9999999999988854 44 467888899999888 9999999999887 4455
Q ss_pred --CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHH
Q 003439 616 --DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 676 (820)
Q Consensus 616 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 676 (820)
+...|..+..+|...|++++|+..++++++++|+++..+..++.++...|++++|.+.+.+
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6779999999999999999999999999999999999999999999999999999875533
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.25 E-value=4.8e-11 Score=113.97 Aligned_cols=167 Identities=10% Similarity=-0.003 Sum_probs=142.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLT 557 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 557 (820)
+..+|..|...|.+.|++++|.+.|++.. +.+...|..+...|.+.|++++|+..+++.... .|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 56788889999999999999999998876 556777999999999999999999999999884 454 456777788
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 003439 558 ACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMEL 635 (820)
Q Consensus 558 a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 635 (820)
.+...++++.+.+.+...... .+.+...+..+..+|.+.|++++|++.|++. ...| +..+|..+...+...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 899999999999999988753 2335678889999999999999999999887 4455 56699999999999999999
Q ss_pred HHHHHHHHhccCCCCcc
Q 003439 636 GAVASDRLFEVDSENVG 652 (820)
Q Consensus 636 a~~~~~~~~~~~p~~~~ 652 (820)
|+..++++++++|+++.
T Consensus 160 A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHhCCccCHH
Confidence 99999999999997643
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.24 E-value=5.2e-11 Score=137.70 Aligned_cols=160 Identities=16% Similarity=0.226 Sum_probs=132.0
Q ss_pred cccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHH
Q 003439 515 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMV 592 (820)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li 592 (820)
..|+.|...|.+.|++++|++.|++.++ +.|+. .++..+..++.+.|++++|++.|++..+ +.|+ ...|..+.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg 84 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 3467777778888888888888888888 46754 5788888888888888888888888774 3554 57888888
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchH
Q 003439 593 DLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV 670 (820)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 670 (820)
.+|.+.|++++|++.|++. .+.|+ ..+|+.+..++...|++++|+..++++++++|+++..+..|+.+|...|+|++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 8888999999999888876 45554 568899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 003439 671 DEVRSLARD 679 (820)
Q Consensus 671 ~~~~~~m~~ 679 (820)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.22 E-value=3.4e-11 Score=131.32 Aligned_cols=263 Identities=10% Similarity=0.036 Sum_probs=172.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC---CCc----hHHHHHHHHHHHcCChHHHHHHHHhhhhc---CCCCC-CcccHhhH
Q 003439 386 AVVDMYAKLGIINSACAVFEGLPV---KDV----ISWNTLITGYAQNGLASEAIEVFQMMEEC---NEINP-NQGTYVSI 454 (820)
Q Consensus 386 ~li~~y~~~g~~~~A~~~f~~~~~---~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~g~~p-d~~t~~~l 454 (820)
.+...+...|++++|...|++... .+. ..|..+...|...|++++|+..|++.... .+-.| ....+..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 344455555666666665554431 121 24555566666666666666666655431 01111 22344455
Q ss_pred HHHhhccCChhHHHHHHHHHHHh----C-CCCchhHHHHHHHHHHhcCC-----------------HHHHHHHHhhCCC-
Q 003439 455 LPAYSHVGALRQGIKIHARVIKN----C-LCFDVFVATCLVDMYGKCGR-----------------IDDAMSLFYQVPR- 511 (820)
Q Consensus 455 l~a~~~~~~~~~a~~i~~~~~~~----g-~~~~~~~~~~li~~y~~~g~-----------------~~~A~~~~~~~~~- 511 (820)
...+...|++++|...+..+.+. + ......++..+...|...|+ +++|.+.+++...
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55666666777766666655443 1 11124466677777888888 7777777765431
Q ss_pred ----C----CccccchHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 003439 512 ----S----SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR-PD----HITFVSLLTACSHSGLVSEGQRYFHMMQEE 578 (820)
Q Consensus 512 ----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 578 (820)
. ....|..+...|...|++++|++.|++..+.... ++ ..++..+...+...|++++|.++++...+.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1 1235777888888999999999999888763111 12 126778888999999999999999887653
Q ss_pred hCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003439 579 FGIKP----HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV---RPD----ASIWGALLGACRIHGNMELGAVASDRLFEV 646 (820)
Q Consensus 579 ~g~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 646 (820)
..-.. ....+..+..+|.+.|++++|.+.+++. .. .++ ..++..+...+...|++++|...+++++++
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 21111 1467788899999999999999999876 11 112 347888889999999999999999999987
Q ss_pred CC
Q 003439 647 DS 648 (820)
Q Consensus 647 ~p 648 (820)
.+
T Consensus 373 ~~ 374 (411)
T 4a1s_A 373 AX 374 (411)
T ss_dssp CC
T ss_pred Hh
Confidence 66
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.22 E-value=1.3e-09 Score=113.70 Aligned_cols=217 Identities=11% Similarity=0.123 Sum_probs=147.3
Q ss_pred HHHHHHHHhhhhcCCCCCCc-ccHhhHHHHhh-------ccCCh-------hHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 003439 429 SEAIEVFQMMEECNEINPNQ-GTYVSILPAYS-------HVGAL-------RQGIKIHARVIKNCLCFDVFVATCLVDMY 493 (820)
Q Consensus 429 ~~A~~l~~~m~~~~g~~pd~-~t~~~ll~a~~-------~~~~~-------~~a~~i~~~~~~~g~~~~~~~~~~li~~y 493 (820)
++|+..|++... ..|+. ..|......+. +.|++ ++|..+++..++.-.+.+...+..++..+
T Consensus 33 ~~a~~~~~~al~---~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLL---VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 567777777766 34433 23434443332 34665 77777777777631223556777788888
Q ss_pred HhcCCHHHHHHHHhhCCC--C-Ccc-ccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHH-hcCCHHH
Q 003439 494 GKCGRIDDAMSLFYQVPR--S-SSV-PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACS-HSGLVSE 567 (820)
Q Consensus 494 ~~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~-~~g~~~~ 567 (820)
.+.|++++|.++|++... | +.. .|..++..+.+.|++++|..+|++.++. .|+ ...|........ ..|++++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 888888888888877652 2 233 6778888888888888888888888874 343 334443333322 3688888
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCChhHHHHHHH
Q 003439 568 GQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-P---VRP--DASIWGALLGACRIHGNMELGAVASD 641 (820)
Q Consensus 568 a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~ 641 (820)
|.++|+...+..+ -+...|..+++.+.+.|++++|..+|++. . +.| ....|..++.....+|+.+.|..+++
T Consensus 188 A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 188 AFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888775432 24567788888888888888888888876 2 244 35588888888888888888888888
Q ss_pred HHhccCCCCcc
Q 003439 642 RLFEVDSENVG 652 (820)
Q Consensus 642 ~~~~~~p~~~~ 652 (820)
++++..|++..
T Consensus 266 ~a~~~~p~~~~ 276 (308)
T 2ond_A 266 RRFTAFREEYE 276 (308)
T ss_dssp HHHHHTTTTTS
T ss_pred HHHHHcccccc
Confidence 88888887553
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.21 E-value=2.9e-08 Score=113.35 Aligned_cols=412 Identities=10% Similarity=0.014 Sum_probs=266.7
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCC---hHHHHHHHHHHHHhC-CCccHHHH
Q 003439 207 RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDN---ILSGLLIHLYIVKHG-LEFNLFVS 282 (820)
Q Consensus 207 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~---~~~a~~~~~~~~~~g-~~~~~~~~ 282 (820)
.|..+|..+|..+.+.+.++.+..+|+++... .+.....|..-+..-.+.++ .+.+.++|+..+... ..|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 47788999999999999999999999999875 33445556666666677777 889999999888765 24677788
Q ss_pred HHHHHHHHccCCH--------HHHHHHHhccC------CC-CchHHHHHHHHHHh---------CCChhhHHHHHHHHHH
Q 003439 283 NNLINMYAKFGMM--------RHALRVFDQMM------ER-DVVSWNSIIAAYEQ---------SNDPITAHGFFTTMQQ 338 (820)
Q Consensus 283 ~~li~~y~~~g~~--------~~A~~~f~~m~------~~-d~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~ 338 (820)
...+....+.++. +...++|+... .+ +...|...+..... +++.+.+..+|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8877766555543 23446666532 22 33567777765432 3345667778877764
Q ss_pred cCCCCCcchHHHHHHHHHhcC---cchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhc-------CC
Q 003439 339 AGIQPDLLTLVSLTSIVAQLN---DCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG-------LP 408 (820)
Q Consensus 339 ~g~~pd~~t~~~ll~a~~~~~---~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-------~~ 408 (820)
+ |-.. +..+-..|.... +...++.+.... ...++.|...+.+ +.
T Consensus 223 --i-P~~~-~~~~w~~Y~~fe~~~~~~~a~~~~~e~----------------------~~~y~~Ar~~~~e~~~~~~~l~ 276 (679)
T 4e6h_A 223 --Q-PMDC-LESMWQRYTQWEQDVNQLTARRHIGEL----------------------SAQYMNARSLYQDWLNITKGLK 276 (679)
T ss_dssp --S-CCSS-HHHHHHHHHHHHHHHCTTTHHHHHHHH----------------------HHHHHHHHHHHHHHHHHTTTCC
T ss_pred --C-ccHH-HHHHHHHHHHHHHhcCcchHHHHHHHh----------------------hHHHHHHHHHHHHHHHHHHhHh
Confidence 2 3211 111211111110 111111111110 0112222222221 11
Q ss_pred C--------------C--C------chHHHHHHHHHHHcC-------ChHHHHHHHHhhhhcCCCCC-CcccHhhHHHHh
Q 003439 409 V--------------K--D------VISWNTLITGYAQNG-------LASEAIEVFQMMEECNEINP-NQGTYVSILPAY 458 (820)
Q Consensus 409 ~--------------~--~------~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~ 458 (820)
. | + ...|...+.---.++ ..+.+..+|++... ..| +...+.....-+
T Consensus 277 r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~---~~p~~~~lW~~ya~~~ 353 (679)
T 4e6h_A 277 RNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ---HVCFAPEIWFNMANYQ 353 (679)
T ss_dssp CCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH---HTTTCHHHHHHHHHHH
T ss_pred hccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHH---HcCCCHHHHHHHHHHH
Confidence 0 0 0 134555554333332 12345667887776 233 344555555566
Q ss_pred hccCChhHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------------CC-----------
Q 003439 459 SHVGALRQGI-KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR-------------SS----------- 513 (820)
Q Consensus 459 ~~~~~~~~a~-~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------------~~----------- 513 (820)
...|+.+.|. ++++..+... +.+...+-..+...-+.|+++.|.++|+++.. |.
T Consensus 354 ~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~ 432 (679)
T 4e6h_A 354 GEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK 432 (679)
T ss_dssp HHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence 7778888996 9999998754 44667778889999999999999999988763 21
Q ss_pred -ccccchHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhc-CCHHHHHHHHHHhHHhhCCCCChhHHHH
Q 003439 514 -SVPWNAIISCHGIHGQGDKALNFFRQMLDE-GVRPDHITFVSLLTACSHS-GLVSEGQRYFHMMQEEFGIKPHLKHYGC 590 (820)
Q Consensus 514 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~g~~p~~~~~~~ 590 (820)
...|...+....+.|+.+.|..+|.+.++. + .+....|...+..-.+. ++.+.|.++|+...+.++ -+...+..
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~ 509 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA--TDGEYINK 509 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CchHHHHH
Confidence 224888888888899999999999999885 2 11233343332222233 558999999999987643 34556778
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 003439 591 MVDLFGRAGHLGMAHNFIQNM-PVRP----DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 591 li~~~~~~g~~~eA~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
.++.....|+.+.|..+|++. ...| ....|...+.--..+|+.+.+..+.+++.+..|+++.
T Consensus 510 y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 510 YLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 889889999999999999987 3333 2358999999999999999999999999999997654
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.20 E-value=1.5e-10 Score=121.69 Aligned_cols=133 Identities=14% Similarity=0.071 Sum_probs=87.0
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC----hhH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGV-RPD----HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKH 587 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~ 587 (820)
|..+...|...|++++|++.+++..+... .++ ..++..+...+...|++++|.++++...+...-.++ ...
T Consensus 186 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (338)
T 3ro2_A 186 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 265 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 44555556666666666666666554210 011 126667777788888888888888776543211111 456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 588 YGCMVDLFGRAGHLGMAHNFIQNM-PV---RPD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 588 ~~~li~~~~~~g~~~eA~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
+..+...|.+.|++++|.+.+++. .. .++ ..+|..+...+...|++++|...+++++++.+.
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 266 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 777888888888888888888765 11 112 347778888899999999999999999887763
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.19 E-value=4e-11 Score=124.96 Aligned_cols=242 Identities=14% Similarity=0.134 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHhhhhcC------CCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHh------CC-
Q 003439 413 ISWNTLITGYAQNGLASEAIEVFQMMEECN------EINPNQGTYVSILPAYSHVGALRQGIKIHARVIKN------CL- 479 (820)
Q Consensus 413 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~------g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------g~- 479 (820)
.+|..+...|...|++++|+.+|+++.+.. ........+..+...+...|++++|...+..+++. +-
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 345555555666666666666666554400 01111223333444444445555555444444332 11
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHH
Q 003439 480 CFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTA 558 (820)
Q Consensus 480 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 558 (820)
.....++..+...|...|++++|.+.|++... ++++... +-.|+ ...+..+...
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~------------------------~~~~~~~-~~~~~~~~~~~~la~~ 162 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALE------------------------IREKVLG-KDHPDVAKQLNNLALL 162 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------------------------HHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH------------------------HHHHhcC-CCChHHHHHHHHHHHH
Confidence 11234455555556666666666555543321 1100000 11121 1234444555
Q ss_pred HHhcCCHHHHHHHHHHhHHhh-----CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCC----------CCCC------
Q 003439 559 CSHSGLVSEGQRYFHMMQEEF-----GIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNMP----------VRPD------ 616 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~-----g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~----------~~p~------ 616 (820)
+...|++++|.++++.+.+.. +..| ....+..+..+|.+.|++++|.+.++++- ..+.
T Consensus 163 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 242 (311)
T 3nf1_A 163 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM 242 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 555555555555555544321 0011 12344555555555555555555554431 0111
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 617 -ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 617 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
...+..+...+...+.+.++...++++....|.....+..++.+|...|++++|.+++++..+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112222223334455666666777777777777777777888888888888888888777654
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.19 E-value=1e-10 Score=126.38 Aligned_cols=222 Identities=9% Similarity=-0.010 Sum_probs=150.2
Q ss_pred HhhccCChhHHHHHHHHHHHh----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCC----C-CC-----ccccchHH
Q 003439 457 AYSHVGALRQGIKIHARVIKN----CLCF-DVFVATCLVDMYGKCGRIDDAMSLFYQVP----R-SS-----SVPWNAII 521 (820)
Q Consensus 457 a~~~~~~~~~a~~i~~~~~~~----g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~-~~-----~~~~~~li 521 (820)
.+...|++++|...+..+.+. +-.+ ...++..+...|...|++++|...+++.. . ++ ..+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 445566677777766666553 1111 23466677777777777777777766544 1 11 23467777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCC-CCh----hHHHHHHHHHHhcCCHHHHHHHHHHhHHhh---CCCC-ChhHHHHHH
Q 003439 522 SCHGIHGQGDKALNFFRQMLDEGVR-PDH----ITFVSLLTACSHSGLVSEGQRYFHMMQEEF---GIKP-HLKHYGCMV 592 (820)
Q Consensus 522 ~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---g~~p-~~~~~~~li 592 (820)
..|...|++++|++.|++.++.... ++. .++..+...+...|++++|.+.++...+.. +..| ...++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 8888888888888888887753111 121 367778888888899999998888776421 2213 345678888
Q ss_pred HHHHHcCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCcchHHhHHHHhh
Q 003439 593 DLFGRAGHLGMAHNFIQNM-PV-----RPD-ASIWGALLGACRIHGN---MELGAVASDRLFEVDSENVGYYVLMSNIYA 662 (820)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 662 (820)
..|.+.|++++|.+.+++. .. .|. ...+..+...+...|+ .++|+..+++. ...|.....+..|+.+|.
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHH
Confidence 8888999999998888775 11 222 2235667777777888 77777777776 344445567778999999
Q ss_pred hcCCcchHHHHHHHHHh
Q 003439 663 NVGKWEGVDEVRSLARD 679 (820)
Q Consensus 663 ~~g~~~~A~~~~~~m~~ 679 (820)
..|++++|...+++..+
T Consensus 351 ~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999888765
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.17 E-value=2.4e-10 Score=126.88 Aligned_cols=177 Identities=11% Similarity=-0.009 Sum_probs=155.5
Q ss_pred HHHHHHHHhhCC---CCCccccchHHHHHHhcCCh-HHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 003439 499 IDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQG-DKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFH 573 (820)
Q Consensus 499 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 573 (820)
++++.+.+++.. ..+...|..+...|...|++ ++|++.|++.++. .|+ ...+..+..++...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455566665443 34566788899999999999 9999999999994 565 5689999999999999999999999
Q ss_pred HhHHhhCCCCChhHHHHHHHHHHHc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CChh
Q 003439 574 MMQEEFGIKPHLKHYGCMVDLFGRA---------GHLGMAHNFIQNM-PVRP-DASIWGALLGACRIH--------GNME 634 (820)
Q Consensus 574 ~m~~~~g~~p~~~~~~~li~~~~~~---------g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~--------g~~~ 634 (820)
... .+.|+...+..+..+|... |++++|.+.+++. ...| +...|..+..+|... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 988 5678888999999999999 9999999999987 3445 567999999999998 9999
Q ss_pred HHHHHHHHHhccCC---CCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 635 LGAVASDRLFEVDS---ENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 635 ~a~~~~~~~~~~~p---~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+|+..++++++++| +++..+..++.+|...|++++|.+.++++.+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999999999999998875
No 72
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.16 E-value=2.3e-08 Score=114.09 Aligned_cols=435 Identities=9% Similarity=-0.018 Sum_probs=269.7
Q ss_pred ChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCC---HHHHHH
Q 003439 224 NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM---MRHALR 300 (820)
Q Consensus 224 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~ 300 (820)
...+.+..|++....+ +-|..+|..++..+.+.+.++.++.+++.+++. ++.....|...+..-.+.|. .+.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3445555556655543 347788888888888888899999999998877 35567788888888888888 889999
Q ss_pred HHhccCC-----CCchHHHHHHHHHHhCCCh----hh----HHHHHHHHHH-cCC-CCCc-chHHHHHHHHH--------
Q 003439 301 VFDQMME-----RDVVSWNSIIAAYEQSNDP----IT----AHGFFTTMQQ-AGI-QPDL-LTLVSLTSIVA-------- 356 (820)
Q Consensus 301 ~f~~m~~-----~d~~~~~~li~~~~~~g~~----~~----A~~~~~~m~~-~g~-~pd~-~t~~~ll~a~~-------- 356 (820)
+|++... +++..|..-+.-..+.++. ++ ..++|+.... .|. .|+. ..|...+.-..
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9987644 5667787776655554433 22 3356655443 355 4543 33333333222
Q ss_pred -hcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHH
Q 003439 357 -QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF 435 (820)
Q Consensus 357 -~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 435 (820)
..+..+.++.++..++... ...-..+|......-...+. ..+.++ +.- ...+++.|...+
T Consensus 205 eeq~~~~~~R~iy~raL~iP-~~~~~~~w~~Y~~fe~~~~~-~~a~~~---------------~~e--~~~~y~~Ar~~~ 265 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQP-MDCLESMWQRYTQWEQDVNQ-LTARRH---------------IGE--LSAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSC-CSSHHHHHHHHHHHHHHHCT-TTHHHH---------------HHH--HHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHhcCc-chHHHH---------------HHH--hhHHHHHHHHHH
Confidence 1223455556666555321 11111222111111000000 001111 110 112334444444
Q ss_pred Hhhhhc-CCC---CCCc--------------------ccHhhHHHHhhccC-------ChhHHHHHHHHHHHhCCCCchh
Q 003439 436 QMMEEC-NEI---NPNQ--------------------GTYVSILPAYSHVG-------ALRQGIKIHARVIKNCLCFDVF 484 (820)
Q Consensus 436 ~~m~~~-~g~---~pd~--------------------~t~~~ll~a~~~~~-------~~~~a~~i~~~~~~~g~~~~~~ 484 (820)
.++... .++ -|.. ..|...+.---..+ ..+....+|+.++... +....
T Consensus 266 ~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~ 344 (679)
T 4e6h_A 266 QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPE 344 (679)
T ss_dssp HHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHH
T ss_pred HHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHH
Confidence 443210 011 1110 01111121111111 1233456787777653 34677
Q ss_pred HHHHHHHHHHhcCCHHHHH-HHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCC---------CCC---
Q 003439 485 VATCLVDMYGKCGRIDDAM-SLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGV---------RPD--- 548 (820)
Q Consensus 485 ~~~~li~~y~~~g~~~~A~-~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~--- 548 (820)
+|-..+..+.+.|+.++|. ++|++.. +.+...|-..+....+.|++++|.++|+++++... .|+
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 7888888888899999996 9998776 34555578888888999999999999999987410 142
Q ss_pred ---------hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcC-CHHHHHHHHHhC--CCCCC
Q 003439 549 ---------HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG-HLGMAHNFIQNM--PVRPD 616 (820)
Q Consensus 549 ---------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g-~~~eA~~~~~~m--~~~p~ 616 (820)
...|...+....+.|..+.|..+|....+.. -.+....|...+.+-.+.| +.+.|.++|+.. ....+
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 2357777888888999999999999988541 1122344544444445555 589999999876 23346
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC---CcchHHhHHHHhhhcCCcchHHHHHHHHHhCC
Q 003439 617 ASIWGALLGACRIHGNMELGAVASDRLFEVDSE---NVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 617 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
...|...+.-....|+.+.|+.+|++++...|+ ....+......-.+.|+.+.+.++.+++.+.-
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 678889998888999999999999999998873 44567778888889999999999999998764
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.16 E-value=1.1e-09 Score=114.29 Aligned_cols=211 Identities=9% Similarity=0.023 Sum_probs=170.0
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHhhCCC----CCccccchHHHHHHh
Q 003439 465 RQGIKIHARVIKNCLCFDVFVATCLVDMYG-------KCGRI-------DDAMSLFYQVPR----SSSVPWNAIISCHGI 526 (820)
Q Consensus 465 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~~~~----~~~~~~~~li~~~~~ 526 (820)
++|..+++.+++.. +.+...|..++..+. +.|++ ++|..+|++... .+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888888753 346677777777765 45886 899999987653 345579999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHH-HcCCHH
Q 003439 527 HGQGDKALNFFRQMLDEGVRPDHI--TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFG-RAGHLG 602 (820)
Q Consensus 527 ~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~-~~g~~~ 602 (820)
.|++++|.++|++.++ +.|+.. .|..+...+.+.|++++|..+|+...+ ..| +...|...+.... ..|+.+
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998 677643 788999999999999999999999884 334 3445544444422 369999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcc---CCC-CcchHHhHHHHhhhcCCcchHHHHHHH
Q 003439 603 MAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEV---DSE-NVGYYVLMSNIYANVGKWEGVDEVRSL 676 (820)
Q Consensus 603 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~ 676 (820)
+|.++|++. ...| +...|..++..+...|+.++|+.+|+++++. .|+ ....+..++..+.+.|++++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999987 2334 5679999999999999999999999999985 553 566888899999999999999999999
Q ss_pred HHhCC
Q 003439 677 ARDRG 681 (820)
Q Consensus 677 m~~~~ 681 (820)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88764
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.15 E-value=9.8e-10 Score=108.90 Aligned_cols=203 Identities=6% Similarity=-0.003 Sum_probs=120.6
Q ss_pred cccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHH
Q 003439 448 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCH 524 (820)
Q Consensus 448 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 524 (820)
...+......+...|++++|...+..+++....++...+..+...|.+.|++++|.+.|++.. +.+...|..+...|
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 345555556666777777777777777666543455555556666777777777777666554 23344566666666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCh--------hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC---hhHHHHHHH
Q 003439 525 GIHGQGDKALNFFRQMLDEGVRPDH--------ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH---LKHYGCMVD 593 (820)
Q Consensus 525 ~~~g~~~~A~~l~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~---~~~~~~li~ 593 (820)
...|++++|++.|++.++. .|+. ..|..+...+...|++++|.+.|+... .+.|+ ...+..+..
T Consensus 87 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHHH
Confidence 6777777777777766663 4432 234555556666666677776666655 34454 345555555
Q ss_pred HHHHcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhh
Q 003439 594 LFGRAGHL--GMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 662 (820)
Q Consensus 594 ~~~~~g~~--~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 662 (820)
+|...|+. ++|..+. ..+...+..+. ....+.+++|+..++++++++|++......+..+..
T Consensus 162 ~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 162 LFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 55544432 2221111 11222232222 233455689999999999999998887777766543
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.15 E-value=2.1e-09 Score=115.90 Aligned_cols=198 Identities=10% Similarity=0.093 Sum_probs=138.6
Q ss_pred HhhHHHHhhccCChhHHHHHHHHHHHhCC------CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCc----c
Q 003439 451 YVSILPAYSHVGALRQGIKIHARVIKNCL------CFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-----RSSS----V 515 (820)
Q Consensus 451 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~------~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~----~ 515 (820)
+..+...+...|+++.|...+..+.+.-. .....+++.+...|...|++++|.+.|++.. ..+. .
T Consensus 146 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 225 (383)
T 3ulq_A 146 FFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGR 225 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 33444444555555555555544433210 0113456667777788888888887776654 1111 2
Q ss_pred ccchHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhC---CCCChhH
Q 003439 516 PWNAIISCHGIHGQGDKALNFFRQMLDE----GVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFG---IKPHLKH 587 (820)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g---~~p~~~~ 587 (820)
+|+.+...|...|++++|++.|++..+. +..|+ ..++..+...+...|++++|.++++...+... -......
T Consensus 226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 305 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE 305 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5777888888999999999999888772 23244 35788889999999999999999998764321 1112234
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 003439 588 YGCMVDLFGRAGH---LGMAHNFIQNMPVRPDAS-IWGALLGACRIHGNMELGAVASDRLFEVDS 648 (820)
Q Consensus 588 ~~~li~~~~~~g~---~~eA~~~~~~m~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 648 (820)
+..+...|...|+ +++|..++++.+..|+.. ++..+...|...|++++|...+++++++..
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5678888889999 999999999986555543 778899999999999999999999987554
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.13 E-value=6.7e-10 Score=105.50 Aligned_cols=160 Identities=13% Similarity=-0.026 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHH
Q 003439 484 FVATCLVDMYGKCGRIDDAMSLFYQVPR---SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTAC 559 (820)
Q Consensus 484 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~ 559 (820)
..+..+...|...|++++|.+.|+++.. .+...|..+...|...|++++|++.++++.+. .| +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 3455556666666666666666666552 23334555555555555555555555555553 22 233444444455
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003439 560 SHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVA 639 (820)
Q Consensus 560 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 639 (820)
...|++++|.++++.+.+. .+.+...|..+...+...|++++|...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA----------------------------------NPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH----------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc----------------------------------CcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 5555555555555544432 112344555555555556666666666
Q ss_pred HHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 640 SDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 640 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
++++++..|+++..+..++.+|...|++++|...++++.+
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666665665555566666666666666666666555543
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.13 E-value=9e-10 Score=109.19 Aligned_cols=187 Identities=12% Similarity=-0.030 Sum_probs=92.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---C-CCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVP---R-SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLL 556 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 556 (820)
++..+..+...|.+.|++++|...|++.. + ++...|..+..+|...|++++|++.|++.++ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 33445555555555566665555555443 1 3444444455555555555555555555555 34433 3455555
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhhCCCCC-h-------hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--H-HHHHHHH
Q 003439 557 TACSHSGLVSEGQRYFHMMQEEFGIKPH-L-------KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD--A-SIWGALL 624 (820)
Q Consensus 557 ~a~~~~g~~~~a~~~~~~m~~~~g~~p~-~-------~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~--~-~~~~~ll 624 (820)
.++...|++++|.+.++...+. .|+ . ..|..+...+.+.|++++|.+.+++. ...|+ . ..|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 5555555555555555555432 222 1 23444445555555555555555544 33443 2 2444444
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 625 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 625 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..+... +...++++..+.+.+...|..+ .....|.+++|...+++..+.
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 444322 2333444444444333322221 223334458888888887765
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.12 E-value=2.2e-09 Score=101.78 Aligned_cols=169 Identities=17% Similarity=0.082 Sum_probs=130.2
Q ss_pred ccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHH
Q 003439 449 GTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHG 525 (820)
Q Consensus 449 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 525 (820)
..+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+++. +.+...|..+...|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345566777889999999999999887654 3467888999999999999999999999875 456677888999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHH
Q 003439 526 IHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAH 605 (820)
Q Consensus 526 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~ 605 (820)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|.++++.+.+. .|
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~---------------------- 141 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---RP---------------------- 141 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT----------------------
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---Cc----------------------
Confidence 9999999999999999852 334557777777788888888888887776643 11
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 003439 606 NFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 653 (820)
Q Consensus 606 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 653 (820)
.+..+|..+...+...|++++|...+++++++.|++...
T Consensus 142 ---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 142 ---------NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp ---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred ---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 234456666667777777777777777777777765543
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.10 E-value=1.4e-08 Score=108.86 Aligned_cols=258 Identities=12% Similarity=0.062 Sum_probs=162.3
Q ss_pred HHHHcCChHHHHHHHHhhhhcCCCCCCc-c----cHhhHHHHhhccCChhHHHHHHHHHHHhCCC-Cc----hhHHHHHH
Q 003439 421 GYAQNGLASEAIEVFQMMEECNEINPNQ-G----TYVSILPAYSHVGALRQGIKIHARVIKNCLC-FD----VFVATCLV 490 (820)
Q Consensus 421 ~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~----~~~~~~li 490 (820)
.+...|++++|...+++... .. .++. . .+..+...+...|+++.|.+.+....+.... .+ ...+..+.
T Consensus 23 ~~~~~g~~~~A~~~~~~al~-~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALE-EL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-TC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH-cC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34445566666666655544 11 1111 1 2233334455556666666665555432100 11 22345566
Q ss_pred HHHHhcCCHHHHHHHHhhCCC-----CC------ccccchHHHHHHhcCChHHHHHHHHHHHHcCCC--C-C-hhHHHHH
Q 003439 491 DMYGKCGRIDDAMSLFYQVPR-----SS------SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR--P-D-HITFVSL 555 (820)
Q Consensus 491 ~~y~~~g~~~~A~~~~~~~~~-----~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p-~-~~t~~~l 555 (820)
..|...|++++|...+++... .+ ...+..+...|...|++++|...+++..+.... | . ..++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 677778888888777765541 11 123555677788888889998888888774321 1 1 2356677
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHH-----HHHHHHHHcCCHHHHHHHHHhCC-CCCC-----HHHHHHHH
Q 003439 556 LTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG-----CMVDLFGRAGHLGMAHNFIQNMP-VRPD-----ASIWGALL 624 (820)
Q Consensus 556 l~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~-----~li~~~~~~g~~~eA~~~~~~m~-~~p~-----~~~~~~ll 624 (820)
...+...|++++|..+++.......-......+. ..+..+...|++++|...+++.. ..|. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 7788899999999999988765422111111121 23455778999999999998872 2221 23567778
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCC------cchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 625 GACRIHGNMELGAVASDRLFEVDSEN------VGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 625 ~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..+...|++++|...++++++..+.. ...+..++.+|...|+.++|...++...+.
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 88889999999999999887754321 236667889999999999999998887653
No 80
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.07 E-value=1.9e-10 Score=119.77 Aligned_cols=241 Identities=11% Similarity=0.083 Sum_probs=146.4
Q ss_pred CcchhHHhHHHHHHHhcCCHHHHHHHHhcCCC--------C---CchHHHHHHHHHHHcCChHHHHHHHHhhhhcC----
Q 003439 378 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPV--------K---DVISWNTLITGYAQNGLASEAIEVFQMMEECN---- 442 (820)
Q Consensus 378 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~---- 442 (820)
+.+..++..+...|...|++++|...|++..+ . ...+|..+...|...|++++|+..|++.....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 33456677788888888888888888876543 1 24567778888888999999999888876611
Q ss_pred -CCCC-CcccHhhHHHHhhccCChhHHHHHHHHHHHh------CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 003439 443 -EINP-NQGTYVSILPAYSHVGALRQGIKIHARVIKN------CLCF-DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSS 513 (820)
Q Consensus 443 -g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 513 (820)
+-.| ...++..+...+...|++++|...+..+.+. +..| ....+..+...|.+.|
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---------------- 167 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG---------------- 167 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT----------------
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC----------------
Confidence 1223 3456677778888999999999998887664 1111 2233444444444444
Q ss_pred ccccchHHHHHHhcCChHHHHHHHHHHHHc------CCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhh------C
Q 003439 514 SVPWNAIISCHGIHGQGDKALNFFRQMLDE------GVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEF------G 580 (820)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------g 580 (820)
++++|++.|+++.+. +-.|+. .++..+...+...|++++|.++++.+.+.. .
T Consensus 168 ---------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 232 (311)
T 3nf1_A 168 ---------------KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS 232 (311)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ---------------CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 455555555544442 112322 356667777777888888888777766421 1
Q ss_pred CCCCh-------hHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 581 IKPHL-------KHYGCMVDLFGRAGHLGMAHNFIQNMP-VRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 581 ~~p~~-------~~~~~li~~~~~~g~~~eA~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
..+.. ..+..+...+...+.+.+|...++... ..|+ ..+|..+...|...|++++|...+++++++.|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11111 122223334445556666666666653 3343 458899999999999999999999999998874
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.01 E-value=6.5e-08 Score=103.97 Aligned_cols=30 Identities=10% Similarity=-0.089 Sum_probs=21.9
Q ss_pred CccHHHHHHHHHHH--HccCCHHHHHHHHhcc
Q 003439 276 EFNLFVSNNLINMY--AKFGMMRHALRVFDQM 305 (820)
Q Consensus 276 ~~~~~~~~~li~~y--~~~g~~~~A~~~f~~m 305 (820)
.|+..+.+.|-+.| .+.+++++|.++++++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i 38 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEV 38 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 45666777777777 6778888888777765
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.00 E-value=4.4e-09 Score=113.21 Aligned_cols=222 Identities=10% Similarity=-0.019 Sum_probs=155.1
Q ss_pred HhhccCChhHHHHHHHHHHHhCC-CC----chhHHHHHHHHHHhcCCHHHHHHHHhhCC----C-CC-----ccccchHH
Q 003439 457 AYSHVGALRQGIKIHARVIKNCL-CF----DVFVATCLVDMYGKCGRIDDAMSLFYQVP----R-SS-----SVPWNAII 521 (820)
Q Consensus 457 a~~~~~~~~~a~~i~~~~~~~g~-~~----~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~-~~-----~~~~~~li 521 (820)
.+...|+++.|...+..+.+... .+ ...++..+...|...|+++.|...+++.. . .+ ..+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34567778888877777765311 11 23466777788888888888877776554 1 11 23477788
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC-CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhh---CCCCChhHHHHHHH
Q 003439 522 SCHGIHGQGDKALNFFRQMLDEGV-RPD----HITFVSLLTACSHSGLVSEGQRYFHMMQEEF---GIKPHLKHYGCMVD 593 (820)
Q Consensus 522 ~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---g~~p~~~~~~~li~ 593 (820)
..|...|++++|++.|++.++..- .++ ..++..+...+...|++++|.+.++...+.. +.+.....+..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 888889999999998888776310 112 2367778888999999999999998877521 22223567788889
Q ss_pred HHHHcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCcchHHhHHHHhhh
Q 003439 594 LFGRAGHLGMAHNFIQNM----PV--RPD-ASIWGALLGACRIHGN---MELGAVASDRLFEVDSENVGYYVLMSNIYAN 663 (820)
Q Consensus 594 ~~~~~g~~~eA~~~~~~m----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 663 (820)
.|.+.|++++|.+.+++. +. .|. ...+..+...+...|+ +++|+..+++. ...|+....+..++.+|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 999999999999998876 11 233 2355556666667777 77777777762 2334445567789999999
Q ss_pred cCCcchHHHHHHHHHh
Q 003439 664 VGKWEGVDEVRSLARD 679 (820)
Q Consensus 664 ~g~~~~A~~~~~~m~~ 679 (820)
.|++++|...++++.+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999888754
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.99 E-value=2.6e-09 Score=110.37 Aligned_cols=186 Identities=8% Similarity=-0.030 Sum_probs=123.4
Q ss_pred HHHhcCCHHHHHHHHhhCCC-----CC----ccccchHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hhHHHHHHH
Q 003439 492 MYGKCGRIDDAMSLFYQVPR-----SS----SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVR-PD----HITFVSLLT 557 (820)
Q Consensus 492 ~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~ 557 (820)
.|...|++++|.+.|++... .+ ..+|+.+...|...|++++|+..|++.++.... .+ ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666666666654431 11 234667777777778888888877777652110 11 246778888
Q ss_pred HHHhc-CCHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---H-----HHHHHH
Q 003439 558 ACSHS-GLVSEGQRYFHMMQEEFGIKPH----LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD---A-----SIWGAL 623 (820)
Q Consensus 558 a~~~~-g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~---~-----~~~~~l 623 (820)
+|... |++++|++.|++..+...-..+ ..++..+...|.+.|++++|.+.+++. ...|+ . ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 89986 9999999999988753211111 356888899999999999999999886 22332 1 156778
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCcch-----HHhHHHHhh--hcCCcchHHHHHHHH
Q 003439 624 LGACRIHGNMELGAVASDRLFEVDSENVGY-----YVLMSNIYA--NVGKWEGVDEVRSLA 677 (820)
Q Consensus 624 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~y~--~~g~~~~A~~~~~~m 677 (820)
...+...|++++|+..++++++++|+.... +..++..|. ..+++++|...++.+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 888999999999999999999999976553 334555554 456677777766543
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.98 E-value=1.5e-09 Score=125.43 Aligned_cols=163 Identities=12% Similarity=0.187 Sum_probs=141.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLT 557 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 557 (820)
+...++.|...|.+.|++++|++.|++.. +.+...|+.+...|.+.|++++|++.|++.++ +.|+. ..|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45678888899999999999999998765 45567799999999999999999999999999 57764 58999999
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChh
Q 003439 558 ACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNME 634 (820)
Q Consensus 558 a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~ 634 (820)
++...|++++|++.|++..+ +.| +...|..+..+|.+.|++++|++.|++. .+.|+ ...|..|...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999885 355 4678999999999999999999999987 55665 569999999999999999
Q ss_pred HHHHHHHHHhccCCC
Q 003439 635 LGAVASDRLFEVDSE 649 (820)
Q Consensus 635 ~a~~~~~~~~~~~p~ 649 (820)
+|++.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999887654
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.96 E-value=2.6e-09 Score=109.22 Aligned_cols=222 Identities=14% Similarity=0.136 Sum_probs=157.7
Q ss_pred hccCChhHHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C----CccccchH
Q 003439 459 SHVGALRQGIKIHARVIKN-------CLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR-------S----SSVPWNAI 520 (820)
Q Consensus 459 ~~~~~~~~a~~i~~~~~~~-------g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l 520 (820)
...|+++.|..+++..++. ..+....++..+...|...|++++|...|++... + ....|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888777652 2223466788899999999999999999987651 1 23458889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc------CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhh-----CCCC-ChhH
Q 003439 521 ISCHGIHGQGDKALNFFRQMLDE------GVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEF-----GIKP-HLKH 587 (820)
Q Consensus 521 i~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----g~~p-~~~~ 587 (820)
...|...|++++|++.|++..+. .-.|+ ..++..+...+...|++++|.++++.+.+.. +-.| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998874 11233 3478888889999999999999999887531 1122 3467
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcCCh------hHHHHHHHHHhccCCCC
Q 003439 588 YGCMVDLFGRAGHLGMAHNFIQNMP----------VRPD-ASIWGALLGACRIHGNM------ELGAVASDRLFEVDSEN 650 (820)
Q Consensus 588 ~~~li~~~~~~g~~~eA~~~~~~m~----------~~p~-~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~p~~ 650 (820)
+..+..+|.+.|++++|.+.++++- ..+. ...|..+.......+.. ..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8889999999999999999998661 1232 23455444444443333 33333333333445666
Q ss_pred cchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 651 VGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 651 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
...+..++.+|...|++++|..++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 678889999999999999999999987653
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.93 E-value=1.6e-08 Score=102.54 Aligned_cols=202 Identities=9% Similarity=-0.021 Sum_probs=125.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C---ccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hhH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVPR--S-S---SVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD----HIT 551 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t 551 (820)
+...+-.+...+.+.|++++|...|+++.. | + ...|..+..+|.+.|++++|+..|++.++. .|+ ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence 344455555666666777777666666552 1 2 233555666666666666666666666663 232 123
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH
Q 003439 552 FVSLLTACSH--------SGLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGA 622 (820)
Q Consensus 552 ~~~ll~a~~~--------~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ 622 (820)
+..+..++.. .|++++|...|+.+.+.+ |+. .....+..+....+.+ ...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 4445555555 666666666666665432 321 1111111111000000 112456
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCc---chHHhHHHHhhhc----------CCcchHHHHHHHHHhCCCCcCCcee
Q 003439 623 LLGACRIHGNMELGAVASDRLFEVDSENV---GYYVLMSNIYANV----------GKWEGVDEVRSLARDRGLKKTPGWS 689 (820)
Q Consensus 623 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~----------g~~~~A~~~~~~m~~~~~~~~~~~s 689 (820)
+...+...|++++|+..++++++..|+++ ..+..++.+|... |++++|...++++.+..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-------- 225 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-------- 225 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--------
Confidence 78889999999999999999999999854 4788899999877 88999999999988652
Q ss_pred EEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHHh
Q 003439 690 SIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 726 (820)
Q Consensus 690 ~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 726 (820)
+.+|...+....+.++...+.+
T Consensus 226 ---------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 ---------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ---------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCChHHHHHHHHHHHHHHHHHH
Confidence 1255556667777777666654
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.88 E-value=3.3e-08 Score=102.00 Aligned_cols=220 Identities=11% Similarity=0.016 Sum_probs=134.3
Q ss_pred CHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhc---CCCCCC-cccHhhHHHHhhccCChhHHHHHH
Q 003439 396 IINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEEC---NEINPN-QGTYVSILPAYSHVGALRQGIKIH 471 (820)
Q Consensus 396 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~ 471 (820)
++++|...|+. ....|...|++++|++.|++.... .|-.++ ..+|..+...+...|++++|...+
T Consensus 32 ~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46777766544 366677778888888777766541 011111 223444444444444444444444
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhc-CChHHHHHHHHHHHHcCCCCC--
Q 003439 472 ARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH-GQGDKALNFFRQMLDEGVRPD-- 548 (820)
Q Consensus 472 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-- 548 (820)
+..++. +.+.|+...+ ..+|+.+...|... |++++|+..|++.++. .|+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~ 152 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQ 152 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTT
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCC
Confidence 433321 1111222211 22466777788885 8888888888888773 221
Q ss_pred -----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh-----hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH
Q 003439 549 -----HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL-----KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDA 617 (820)
Q Consensus 549 -----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~-----~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~ 617 (820)
..++..+...+...|++++|..+|+...+...-.+.. ..|..+..+|...|++++|...+++. .+.|+.
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 2467788889999999999999999887542111121 15677888899999999999999887 445542
Q ss_pred H------HHHHHHHHHH--hcCChhHHHHHHHHHhccCCCCcchH
Q 003439 618 S------IWGALLGACR--IHGNMELGAVASDRLFEVDSENVGYY 654 (820)
Q Consensus 618 ~------~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~ 654 (820)
. .+..++.++. ..+++++|+..|+++..++|.+...+
T Consensus 233 ~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp -----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 2 3445566664 34678889999988888888654433
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.87 E-value=2.7e-09 Score=97.84 Aligned_cols=141 Identities=9% Similarity=-0.012 Sum_probs=107.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHc
Q 003439 521 ISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRA 598 (820)
Q Consensus 521 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~ 598 (820)
...+...|++++|++.+++... ..|+ ...+..+...|...|++++|++.|+...+. .| +...|..+..+|.+.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc
Confidence 3445566777888887777655 3443 345667777888888888888888887743 44 467788888888888
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHH-HHHHhccCCCCcchHHhHHHHhhhcCC
Q 003439 599 GHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVA-SDRLFEVDSENVGYYVLMSNIYANVGK 666 (820)
Q Consensus 599 g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~y~~~g~ 666 (820)
|++++|...|++. .+.|+ ..+|..+...+...|+.++|.+. ++++++++|+++..|.....++...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888888876 45564 66899999999999998776655 699999999999999999998888775
No 89
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.86 E-value=3.3e-07 Score=98.11 Aligned_cols=157 Identities=11% Similarity=-0.005 Sum_probs=71.6
Q ss_pred hHHHHHHHhcCCHHHHHHHHhcCC-------CC----CchHHHHHHHHHHHcCChHHHHHHHHhhhhcCC-CCCC--ccc
Q 003439 385 NAVVDMYAKLGIINSACAVFEGLP-------VK----DVISWNTLITGYAQNGLASEAIEVFQMMEECNE-INPN--QGT 450 (820)
Q Consensus 385 ~~li~~y~~~g~~~~A~~~f~~~~-------~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g-~~pd--~~t 450 (820)
+.+...|...|++++|...+++.. .+ ....+..+...+...|++++|...+++...... ..|. ..+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 445555566666666665554332 11 112344455566666667776666666544110 0010 122
Q ss_pred HhhHHHHhhccCChhHHHHHHHHHHHhCCCCc--hhHHH----HHHHHHHhcCCHHHHHHHHhhCCCCCcc-------cc
Q 003439 451 YVSILPAYSHVGALRQGIKIHARVIKNCLCFD--VFVAT----CLVDMYGKCGRIDDAMSLFYQVPRSSSV-------PW 517 (820)
Q Consensus 451 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~----~li~~y~~~g~~~~A~~~~~~~~~~~~~-------~~ 517 (820)
+..+...+...|++++|...++...+....++ ..... ..+..+...|++++|...+++....+.. .+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 33344445555666666666555543311111 11111 1223355556666666666555432211 12
Q ss_pred chHHHHHHhcCChHHHHHHHHHHH
Q 003439 518 NAIISCHGIHGQGDKALNFFRQML 541 (820)
Q Consensus 518 ~~li~~~~~~g~~~~A~~l~~~m~ 541 (820)
..+...+...|++++|...+++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 233444444555555555554443
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.84 E-value=2.5e-07 Score=93.72 Aligned_cols=174 Identities=9% Similarity=0.014 Sum_probs=129.0
Q ss_pred HHHHHhhCCC---CCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003439 502 AMSLFYQVPR---SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQE 577 (820)
Q Consensus 502 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 577 (820)
|...|++... ++...+..+..++...|++++|++++.+.+..|-.++ ...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6667776652 3444456777888889999999999998877553233 34777788899999999999999999874
Q ss_pred hhCCCC-----ChhHHHHHHHH--HHHcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc-
Q 003439 578 EFGIKP-----HLKHYGCMVDL--FGRAG--HLGMAHNFIQNM-PVRPDASIWGALLGACRIHGNMELGAVASDRLFEV- 646 (820)
Q Consensus 578 ~~g~~p-----~~~~~~~li~~--~~~~g--~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 646 (820)
. .| +..+...|..+ ....| +.++|..+|+++ ...|+..+-..|++++.+.|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 56 24445555544 33334 899999999998 33465333344555888999999999999988776
Q ss_pred ---------CCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 647 ---------DSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 647 ---------~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+|+++.++..++.++...|+ +|.++++++.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 58888888888878888886 889999998875
No 91
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.82 E-value=2.7e-08 Score=102.35 Aligned_cols=163 Identities=9% Similarity=-0.058 Sum_probs=128.9
Q ss_pred CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHH
Q 003439 511 RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYG 589 (820)
Q Consensus 511 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 589 (820)
+.+...+..+...+.+.|++++|+..|++.++ ..|+. ..+..+..++...|++++|.+.++.+.. ..|+.....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~ 188 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QDQDTRYQG 188 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GGCSHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hhcchHHHH
Confidence 33444455667777888999999999999988 46754 5788888899999999999999988763 356544333
Q ss_pred HHH-HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--cchHHhHHHHhhhc
Q 003439 590 CMV-DLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSEN--VGYYVLMSNIYANV 664 (820)
Q Consensus 590 ~li-~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~ 664 (820)
... ..+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ...+..|+.+|...
T Consensus 189 ~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 189 LVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 322 3366777888888888776 3345 56699999999999999999999999999999988 78899999999999
Q ss_pred CCcchHHHHHHHHH
Q 003439 665 GKWEGVDEVRSLAR 678 (820)
Q Consensus 665 g~~~~A~~~~~~m~ 678 (820)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 99999998877654
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.82 E-value=3.5e-08 Score=99.91 Aligned_cols=201 Identities=12% Similarity=0.058 Sum_probs=142.1
Q ss_pred cccHhhHHHHhhccCChhHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C---ccccch
Q 003439 448 QGTYVSILPAYSHVGALRQGIKIHARVIKNCLCF--DVFVATCLVDMYGKCGRIDDAMSLFYQVPR--S-S---SVPWNA 519 (820)
Q Consensus 448 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~ 519 (820)
...+......+.+.|++++|...++.+++..... ....+..+...|.+.|++++|...|++... | + ...|..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 3455566677889999999999999998865322 156778889999999999999999998762 2 2 234667
Q ss_pred HHHHHHh--------cCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHH
Q 003439 520 IISCHGI--------HGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGC 590 (820)
Q Consensus 520 li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ 590 (820)
+..++.. .|++++|+..|++.++. .|+.. ....+. .+...... ....+..
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~--------------~~~~~~~~-----~~~~~~~ 153 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQ--------------KIRELRAK-----LARKQYE 153 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHH--------------HHHHHHHH-----HHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHH--------------HHHHHHHH-----HHHHHHH
Confidence 7788888 99999999999999984 56543 222211 11111110 0112456
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CChhHHHHHHHHHhccCCCCcch--
Q 003439 591 MVDLFGRAGHLGMAHNFIQNM-PVRPD----ASIWGALLGACRIH----------GNMELGAVASDRLFEVDSENVGY-- 653 (820)
Q Consensus 591 li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~-- 653 (820)
+...|.+.|++++|...|+++ ...|+ ...|..+..++... |++++|+..++++++..|+++..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 233 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT 233 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence 778888899999999888876 22333 34677777777765 88899999999999999988643
Q ss_pred -HHhHHHHhhhcCCcch
Q 003439 654 -YVLMSNIYANVGKWEG 669 (820)
Q Consensus 654 -~~~l~~~y~~~g~~~~ 669 (820)
...+..++...|++++
T Consensus 234 a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 234 AEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 3455555555555443
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.81 E-value=8.2e-08 Score=94.73 Aligned_cols=179 Identities=9% Similarity=-0.035 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCc----cccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----HHH
Q 003439 484 FVATCLVDMYGKCGRIDDAMSLFYQVPR--SSS----VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI----TFV 553 (820)
Q Consensus 484 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~ 553 (820)
..+..+...+.+.|++++|...|+++.. |+. ..+..+..+|.+.|++++|+..|++.++. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444455666777777777777776652 221 23556667777777777777777777763 44432 333
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHhHHhhCCCCChh-HHHHHHHHHHHcCCHHHHHHHHHhCCCC
Q 003439 554 SLLTACSH------------------SGLVSEGQRYFHMMQEEFGIKPHLK-HYGCMVDLFGRAGHLGMAHNFIQNMPVR 614 (820)
Q Consensus 554 ~ll~a~~~------------------~g~~~~a~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~eA~~~~~~m~~~ 614 (820)
.+..++.. .|++++|...|+.+.+. .|+.. .+.++. +.+.+.+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~----~l~~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATK----RLVFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHH----HHHHHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHH----HHHHHHHHH---------
Confidence 33334433 34455555555555422 23211 111110 000000000
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc---chHHhHHHHhhhcCCcchHHHHHHHHHhCCC
Q 003439 615 PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENV---GYYVLMSNIYANVGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 615 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 682 (820)
......+...+...|++++|+..++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00113456678899999999999999999999876 5688899999999999999999999887654
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.80 E-value=4.8e-08 Score=99.59 Aligned_cols=165 Identities=13% Similarity=0.151 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C----CccccchHHHHHHhcCChHHHHHHHHHHHHc------CC
Q 003439 483 VFVATCLVDMYGKCGRIDDAMSLFYQVPR-------S----SSVPWNAIISCHGIHGQGDKALNFFRQMLDE------GV 545 (820)
Q Consensus 483 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~ 545 (820)
..++..+...|...|++++|.+.|++... + ....|..+...|...|++++|++.|+++.+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34555566666666666666666655431 1 1234666777777888888888888877764 11
Q ss_pred CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhh------CCCCC-hhHHHHHHHHHHHc------CCHHHHHHHHHhC
Q 003439 546 RPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEF------GIKPH-LKHYGCMVDLFGRA------GHLGMAHNFIQNM 611 (820)
Q Consensus 546 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------g~~p~-~~~~~~li~~~~~~------g~~~eA~~~~~~m 611 (820)
.|+ ..++..+...+...|++++|.++++...+.. ...+. ...+..+...+... ..+.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 333 3477788889999999999999998877531 11222 23333333333332 2355555556555
Q ss_pred C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 003439 612 P-VRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVD 647 (820)
Q Consensus 612 ~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 647 (820)
. ..|+ ..+|..+...|...|++++|...+++++++.
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 3 2233 3488889999999999999999999988753
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.80 E-value=6.7e-08 Score=85.82 Aligned_cols=128 Identities=18% Similarity=0.255 Sum_probs=69.1
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG 596 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 596 (820)
|..+...|...|++++|+.+|+++.+.+ +.+..++..+...+...|++++|..+++.+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------------ 64 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------------------ 64 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH------------------
Confidence 3444555555555555555555555432 112334444444455555555555555444422
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHH
Q 003439 597 RAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSL 676 (820)
Q Consensus 597 ~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 676 (820)
.+.+...|..+...+...|++++|...++++++..|++...+..++.+|...|++++|...+++
T Consensus 65 ----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 65 ----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp ----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ----------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 1123445555555566666666666666666666666666666666666666666666666666
Q ss_pred HHh
Q 003439 677 ARD 679 (820)
Q Consensus 677 m~~ 679 (820)
+.+
T Consensus 129 ~~~ 131 (136)
T 2fo7_A 129 ALE 131 (136)
T ss_dssp HHH
T ss_pred HHc
Confidence 554
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.78 E-value=1.1e-08 Score=93.69 Aligned_cols=123 Identities=11% Similarity=0.019 Sum_probs=101.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHG 631 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 631 (820)
|...+...|++++|++.++... ...|+ ...+-.+..+|.+.|++++|.+.|++. .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445566788999999887665 34443 345667899999999999999999987 4556 5669999999999999
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHH-HHHHHhC
Q 003439 632 NMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEV-RSLARDR 680 (820)
Q Consensus 632 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~-~~~m~~~ 680 (820)
++++|+..++++++++|+++..+..++.+|.+.|++++|.+. ++++.+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987765 5777654
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.78 E-value=1.2e-07 Score=84.18 Aligned_cols=123 Identities=17% Similarity=0.230 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 003439 485 VATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSH 561 (820)
Q Consensus 485 ~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 561 (820)
.+..+...|...|++++|..+|+++. +.+...|..+...+...|++++|...|+++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 56778899999999999999999875 4566778889999999999999999999999853 3345577778888888
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 003439 562 SGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQN 610 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 610 (820)
.|++++|.++++.+.+. .+.+...+..++..|.+.|++++|.+.+++
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 88888888888877643 112233444444444444444444444443
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.77 E-value=1.1e-08 Score=118.70 Aligned_cols=168 Identities=11% Similarity=-0.066 Sum_probs=118.3
Q ss_pred HhcCCHHHHHHHHhhCC-----------CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHh
Q 003439 494 GKCGRIDDAMSLFYQVP-----------RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSH 561 (820)
Q Consensus 494 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 561 (820)
...|++++|.+.|++.. +.+...|..+...|.+.|++++|++.|++.++. .|+ ...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 45666677766666553 334455666777777778888888888887773 454 4567777777888
Q ss_pred cCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 003439 562 SGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAV 638 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 638 (820)
.|++++|.+.|++..+. .| +...+..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888777643 44 45667777788888888888 7777765 3344 45578888888888888888888
Q ss_pred HHHHHhccCCCCcchHHhHHHHhhhcCCc
Q 003439 639 ASDRLFEVDSENVGYYVLMSNIYANVGKW 667 (820)
Q Consensus 639 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 667 (820)
.++++++++|++..++..++.+|...|+.
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~ 584 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRST 584 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCC
Confidence 88888888888888888888888776663
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.73 E-value=4.2e-08 Score=92.59 Aligned_cols=156 Identities=10% Similarity=0.001 Sum_probs=102.6
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHH-HH
Q 003439 519 AIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL-FG 596 (820)
Q Consensus 519 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~-~~ 596 (820)
.+...+.+.|++++|+..|++.++ ..|+ ...+..+..++...|++++|...++..... .|+...+..+... +.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHH
Confidence 344455566666666666666655 3443 345666666666777777777766665432 2322222221111 11
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--cchHHhHHHHhhhcCCcchHHH
Q 003439 597 RAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSEN--VGYYVLMSNIYANVGKWEGVDE 672 (820)
Q Consensus 597 ~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~~A~~ 672 (820)
+.+...+|.+.+++. ...| +...|..+...+...|++++|+..++++++.+|+. +..+..++.+|...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 222223455666554 3345 46788899999999999999999999999999875 5588899999999999999999
Q ss_pred HHHHHHh
Q 003439 673 VRSLARD 679 (820)
Q Consensus 673 ~~~~m~~ 679 (820)
.+++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887654
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.66 E-value=3.7e-07 Score=89.02 Aligned_cols=161 Identities=8% Similarity=-0.089 Sum_probs=120.2
Q ss_pred CccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC----CHHHHHHHHHHhHHhhCCCCChhHH
Q 003439 513 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSG----LVSEGQRYFHMMQEEFGIKPHLKHY 588 (820)
Q Consensus 513 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~~~~g~~p~~~~~ 588 (820)
+...+..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|.++|+...+. -+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 44445555556666677777777777777654 44556666666666 5 788888888877643 245667
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCcchHHh
Q 003439 589 GCMVDLFGR----AGHLGMAHNFIQNM-PVRPD---ASIWGALLGACRI----HGNMELGAVASDRLFEVDSENVGYYVL 656 (820)
Q Consensus 589 ~~li~~~~~----~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~ 656 (820)
..|..+|.. .+++++|.+.|++. ...|+ ...+..|...|.. .++.++|+..++++.++ |.++..+..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 777777776 77899999998887 33442 6788888888888 78999999999999988 667888999
Q ss_pred HHHHhhhc-C-----CcchHHHHHHHHHhCCC
Q 003439 657 MSNIYANV-G-----KWEGVDEVRSLARDRGL 682 (820)
Q Consensus 657 l~~~y~~~-g-----~~~~A~~~~~~m~~~~~ 682 (820)
|+.+|... | ++++|...+++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999764 3 89999999999888753
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.66 E-value=1.5e-07 Score=107.24 Aligned_cols=158 Identities=12% Similarity=0.058 Sum_probs=124.0
Q ss_pred cCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 003439 496 CGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRY 571 (820)
Q Consensus 496 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 571 (820)
.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999877 34556789999999999999999999999998 4665 56888899999999999999999
Q ss_pred HHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHHhc
Q 003439 572 FHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIH---GNMELGAVASDRLFE 645 (820)
Q Consensus 572 ~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 645 (820)
+++..+. .| +...+..+..+|.+.|++++|.+.+++. ...| +...|..+...+... |+.++|...++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998854 34 4678899999999999999999999987 3444 566899999999999 999999999999999
Q ss_pred cCCCCcchHHhHH
Q 003439 646 VDSENVGYYVLMS 658 (820)
Q Consensus 646 ~~p~~~~~~~~l~ 658 (820)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999988888776
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.64 E-value=2.3e-07 Score=90.16 Aligned_cols=126 Identities=9% Similarity=0.014 Sum_probs=98.5
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHH
Q 003439 519 AIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFG 596 (820)
Q Consensus 519 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~ 596 (820)
.+...|...|++++|+..|++.++ +.|+ ...+..+..++...|++++|.+.|+...+. .| +...+..+...|.
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHH
Confidence 378889999999999999999999 4675 468888999999999999999999998853 55 4678888888887
Q ss_pred HcCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003439 597 RAGH--LGMAHNFIQNMPVRPDA--SIWGALLGACRIHGNMELGAVASDRLFEVDSEN 650 (820)
Q Consensus 597 ~~g~--~~eA~~~~~~m~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 650 (820)
..|. .+++...++... .|+. ..|..+..++...|++++|+..+++++++.|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6654 445666676653 3443 355556667788899999999999999999963
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.64 E-value=3.5e-07 Score=106.17 Aligned_cols=188 Identities=11% Similarity=0.004 Sum_probs=143.8
Q ss_pred hccCChhHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhc
Q 003439 459 SHVGALRQGIKIHARVI--------KNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIH 527 (820)
Q Consensus 459 ~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 527 (820)
...|++++|.+.++.++ +.. +.+...+..+...|.+.|++++|.+.|++.. ..+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 66777788887777776 322 3356677888888999999999999998876 55667788899999999
Q ss_pred CChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHH
Q 003439 528 GQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAH 605 (820)
Q Consensus 528 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~ 605 (820)
|++++|++.|++.++ +.|+ ...+..+..++...|++++ .+.|+...+. .| +...|..+..+|.+.|++++|.
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999 4675 4688889999999999999 9999988853 45 4578899999999999999999
Q ss_pred HHHHhC-CCCCCH-HHHHHHHHHHHhcCC-----hhHHHHHHHHHhccCCCCcch
Q 003439 606 NFIQNM-PVRPDA-SIWGALLGACRIHGN-----MELGAVASDRLFEVDSENVGY 653 (820)
Q Consensus 606 ~~~~~m-~~~p~~-~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~ 653 (820)
+.++++ ...|+. ..|..+..++...++ .+...++.+.+..+.++++..
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 999998 577874 488888888766555 244444445555555544443
No 104
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.64 E-value=7.7e-08 Score=87.80 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=86.1
Q ss_pred CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHh
Q 003439 580 GIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 656 (820)
Q Consensus 580 g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 656 (820)
.+.| +...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 3444 3456667778888889999999888876 3344 67789999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcchHHHHHHHHHhC
Q 003439 657 MSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 657 l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
++.+|...|++++|...+++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999988765
No 105
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.63 E-value=9.9e-07 Score=89.38 Aligned_cols=180 Identities=11% Similarity=0.091 Sum_probs=131.0
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCccccchHHHHHHhcCChHHHHHHHHHHH
Q 003439 467 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR-----SSSVPWNAIISCHGIHGQGDKALNFFRQML 541 (820)
Q Consensus 467 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 541 (820)
+...++..++.+ .++......+..+|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566655544 34455556788888999999999999988743 234457778889999999999999999998
Q ss_pred HcCCCC-----ChhHHHHHHHH--HHhcC--CHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 003439 542 DEGVRP-----DHITFVSLLTA--CSHSG--LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM- 611 (820)
Q Consensus 542 ~~g~~p-----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m- 611 (820)
+ ..| +..+...|..+ ....| ++.+|..+|+++.+. .|+......+..++.+.|++++|.+.++.+
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 577 35666666666 33334 899999999998744 455333344455888999999999998765
Q ss_pred CC----------CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchH
Q 003439 612 PV----------RPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 654 (820)
Q Consensus 612 ~~----------~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 654 (820)
.. .|+ +.+.-.++......|+ +|.++++++.+..|+++...
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 21 254 4466566666666776 88999999999999887543
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.62 E-value=2.6e-07 Score=96.06 Aligned_cols=219 Identities=11% Similarity=0.011 Sum_probs=146.7
Q ss_pred cCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 003439 425 NGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMS 504 (820)
Q Consensus 425 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 504 (820)
.|++++|.+++++..+ . .+.. + +...++++.|...+..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k-~--~~~~--~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEK-Y--LKTS--F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHH-H--HCCC--S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHH-H--cccc--c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4667788888877665 1 1111 0 11136667666665543 345667778877777
Q ss_pred HHhhCCC-----CC----ccccchHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--hhHHHHHHHHHHhcCCHHHHHH
Q 003439 505 LFYQVPR-----SS----SVPWNAIISCHGIHGQGDKALNFFRQMLDEGV---RPD--HITFVSLLTACSHSGLVSEGQR 570 (820)
Q Consensus 505 ~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~ 570 (820)
.|.+... .+ ...|+.+...|...|++++|+..|++.++.-. .|. ..++..+...|.. |++++|++
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7765541 11 23477788888888999999999988776311 121 2467778888888 99999999
Q ss_pred HHHHhHHhhCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCChhHHHH
Q 003439 571 YFHMMQEEFGIKP----HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV---RPD----ASIWGALLGACRIHGNMELGAV 638 (820)
Q Consensus 571 ~~~~m~~~~g~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~ 638 (820)
.|+...+.+.-.. ....+..+..+|.+.|++++|.+.+++. .+ .++ ...|..++..+...|++++|+.
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998775321111 1357888899999999999999999876 11 122 2266677777888899999999
Q ss_pred HHHHHhccCCCCcch-----HHhHHHHhhhcCCcchHHH
Q 003439 639 ASDRLFEVDSENVGY-----YVLMSNIYANVGKWEGVDE 672 (820)
Q Consensus 639 ~~~~~~~~~p~~~~~-----~~~l~~~y~~~g~~~~A~~ 672 (820)
.+++++ ++|+.... ...++..| ..|+.+++.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 99975543 23445545 5566555544
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.61 E-value=1.8e-07 Score=82.67 Aligned_cols=94 Identities=11% Similarity=0.092 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhc
Q 003439 587 HYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 664 (820)
Q Consensus 587 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 664 (820)
.+......|.+.|++++|++.|++. ...| +..+|..+..++...|++++|+..++++++++|+++..|..++.+|...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3444555555555666665555554 2233 3445666666666666666666666666666666666666666666666
Q ss_pred CCcchHHHHHHHHHhC
Q 003439 665 GKWEGVDEVRSLARDR 680 (820)
Q Consensus 665 g~~~~A~~~~~~m~~~ 680 (820)
|++++|.+.+++..+.
T Consensus 95 ~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 95 REWSKAQRAYEDALQV 110 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6666666666665543
No 108
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.61 E-value=8.4e-08 Score=87.55 Aligned_cols=101 Identities=11% Similarity=0.018 Sum_probs=87.8
Q ss_pred CCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHh
Q 003439 580 GIKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVL 656 (820)
Q Consensus 580 g~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 656 (820)
.+.|+ ...+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..|+++++++|+++..+..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34443 456777788888899999999998887 3455 56799999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcchHHHHHHHHHhC
Q 003439 657 MSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 657 l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
++.+|...|++++|...++++.+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999876
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.58 E-value=4e-07 Score=103.65 Aligned_cols=145 Identities=10% Similarity=-0.011 Sum_probs=87.2
Q ss_pred cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHH
Q 003439 461 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFF 537 (820)
Q Consensus 461 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 537 (820)
.|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356677777777766543 2245667777777777777777777777654 334455777777777777777777777
Q ss_pred HHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHc---CCHHHHHHHHHhC
Q 003439 538 RQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRA---GHLGMAHNFIQNM 611 (820)
Q Consensus 538 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~---g~~~eA~~~~~~m 611 (820)
++..+. .|+ ...+..+..++...|++++|.+.++...+. .| +...+..+..+|... |+.++|.+.+++.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 777773 454 456677777777777777777777776643 33 355667777777777 7777777777665
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.57 E-value=2.3e-07 Score=81.95 Aligned_cols=114 Identities=10% Similarity=-0.015 Sum_probs=94.0
Q ss_pred CCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHH
Q 003439 545 VRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIW 620 (820)
Q Consensus 545 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~ 620 (820)
+.|+. ..+......+.+.|++++|++.|+...+. .| +...|..+..+|.+.|++++|++.+++. .+.| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 55654 36777788888899999999999888753 34 5678888888999999999999988876 4445 46699
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHh
Q 003439 621 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 661 (820)
Q Consensus 621 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 661 (820)
..+..++...|++++|+..++++++++|++..++..|.+++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999888777653
No 111
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.57 E-value=2.6e-07 Score=89.79 Aligned_cols=155 Identities=12% Similarity=0.048 Sum_probs=117.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHH----------------HHHHHHhcCCHHHHHHHHHHhHHhhCCC
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVS----------------LLTACSHSGLVSEGQRYFHMMQEEFGIK 582 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~----------------ll~a~~~~g~~~~a~~~~~~m~~~~g~~ 582 (820)
....+...|++++|+..|++.++ ..|+. ..+.. +..++...|++++|...|+...+. .
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~ 84 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK---A 84 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---C
Confidence 34456677888888888888887 45654 35555 888999999999999999998854 4
Q ss_pred C-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC--hhHHHHHHHHHhccCCCCcchHHhH
Q 003439 583 P-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGN--MELGAVASDRLFEVDSENVGYYVLM 657 (820)
Q Consensus 583 p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l 657 (820)
| +...+..+..+|...|++++|.+.|++. ...|+ ..+|..+...+...|+ .+.+...++++....|. ...+..+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~ 163 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRD 163 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHH
Confidence 5 5678899999999999999999999987 45564 6689999988876654 34556666666544442 2245567
Q ss_pred HHHhhhcCCcchHHHHHHHHHhC
Q 003439 658 SNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 658 ~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+..+...|++++|...++++.+.
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 88888899999999999998765
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.56 E-value=1.9e-07 Score=97.13 Aligned_cols=196 Identities=11% Similarity=-0.003 Sum_probs=150.0
Q ss_pred cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHH
Q 003439 461 VGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQM 540 (820)
Q Consensus 461 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 540 (820)
.|++++|.++++...+.... . .+...|++++|...|++. ...|...|++++|++.|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence 56788899998888764221 1 122258899999988653 56788999999999999998
Q ss_pred HHcCC---CC-C-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCC--C--ChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 003439 541 LDEGV---RP-D-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK--P--HLKHYGCMVDLFGRAGHLGMAHNFIQNM 611 (820)
Q Consensus 541 ~~~g~---~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~--p--~~~~~~~li~~~~~~g~~~eA~~~~~~m 611 (820)
.+... .+ . ..+|..+...|...|++++|...|+...+.+.-. | ...++..+..+|.+ |++++|++.+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 76321 11 1 2478888899999999999999999876542111 1 13577888899988 9999999999876
Q ss_pred -CCC---CC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc------hHHhHHHHhhhcCCcchHHHHHHHH
Q 003439 612 -PVR---PD----ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG------YYVLMSNIYANVGKWEGVDEVRSLA 677 (820)
Q Consensus 612 -~~~---p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~y~~~g~~~~A~~~~~~m 677 (820)
.+. .+ ..++..+...+...|++++|+..+++++++.|++.. .+..++.+|...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111 11 357888999999999999999999999998765432 5667888899999999999999988
Q ss_pred H
Q 003439 678 R 678 (820)
Q Consensus 678 ~ 678 (820)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 7
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.55 E-value=1.1e-06 Score=90.15 Aligned_cols=131 Identities=7% Similarity=-0.069 Sum_probs=112.1
Q ss_pred CC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 003439 547 PD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGAL 623 (820)
Q Consensus 547 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~l 623 (820)
|+ ...+..+...+...|++++|.+.|+...+. .| +...+..+..+|.+.|++++|.+.++++ ...|+...+...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 54 457778888899999999999999998854 45 4678889999999999999999999998 456776644333
Q ss_pred HH-HHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 624 LG-ACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 624 l~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.. .+...++.+.|+..++++++.+|+++..+..|+.+|...|++++|...++.+.+.
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 33 3677888999999999999999999999999999999999999999999999876
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.54 E-value=1.1e-06 Score=86.50 Aligned_cols=183 Identities=13% Similarity=-0.015 Sum_probs=131.0
Q ss_pred cHhhHHHHhhccCChhHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCC-cc---ccchHH
Q 003439 450 TYVSILPAYSHVGALRQGIKIHARVIKNCLCF--DVFVATCLVDMYGKCGRIDDAMSLFYQVP--RSS-SV---PWNAII 521 (820)
Q Consensus 450 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~-~~---~~~~li 521 (820)
.+......+...|++++|...++.+++..... ....+..+...|.+.|++++|...|+++. .|+ .. .|..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 34455667888999999999999998865332 23567788999999999999999999876 232 21 344445
Q ss_pred HHHHh------------------cCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCC
Q 003439 522 SCHGI------------------HGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIK 582 (820)
Q Consensus 522 ~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~ 582 (820)
.++.. .|+.++|+..|+++++ ..|+.. ....... .+ .+...+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~----l~------~~~~~~~------ 147 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKR----LV------FLKDRLA------ 147 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHH----HH------HHHHHHH------
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHH----HH------HHHHHHH------
Confidence 55543 5789999999999998 467764 2222111 00 1111111
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 003439 583 PHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDA----SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGY 653 (820)
Q Consensus 583 p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 653 (820)
...-.+...|.+.|++++|...|+++ ...|+. ..+..+..++.+.|+.++|+..++++....|++...
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 12235678899999999999999887 333432 478889999999999999999999999999987654
No 115
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.53 E-value=4.8e-07 Score=85.22 Aligned_cols=155 Identities=12% Similarity=0.025 Sum_probs=110.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH-HHh
Q 003439 486 ATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTA-CSH 561 (820)
Q Consensus 486 ~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~ 561 (820)
...+...+.+.|++++|...|++.. +.+...|..+...|...|++++|+..|++.... .|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 3445566778888888888888877 445566888888888888888888888887763 4533322221111 122
Q ss_pred cCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChhHH
Q 003439 562 SGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD---ASIWGALLGACRIHGNMELG 636 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~a 636 (820)
.+...+|.+.++...+. .| +...+..+...|.+.|++++|.+.++++ ...|+ ...|..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22333467777777643 45 4677888888999999999999998876 45554 45888899999999999999
Q ss_pred HHHHHHHhc
Q 003439 637 AVASDRLFE 645 (820)
Q Consensus 637 ~~~~~~~~~ 645 (820)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987753
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.53 E-value=8.9e-07 Score=86.10 Aligned_cols=125 Identities=10% Similarity=-0.013 Sum_probs=103.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 003439 552 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRI 629 (820)
Q Consensus 552 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~ 629 (820)
+..+...+...|++++|.+.|+.. +.|+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 445566677888888888888654 4567778888888888888888888888776 3333 56688999999999
Q ss_pred cCChhHHHHHHHHHhccCCCCc----------------chHHhHHHHhhhcCCcchHHHHHHHHHhCC
Q 003439 630 HGNMELGAVASDRLFEVDSENV----------------GYYVLMSNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 630 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
.|++++|+..+++++++.|++. ..+..++.+|...|++++|.+.++++.+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999888777 788999999999999999999999988763
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.52 E-value=4.1e-06 Score=86.18 Aligned_cols=160 Identities=7% Similarity=-0.033 Sum_probs=116.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC-CCChh----HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC----hhHHHH
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEGV-RPDHI----TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKHYGC 590 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~ 590 (820)
.+..+...|++++|.+++++..+... .|+.. .+..+...+...|++++|...++.......-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788888888888888877321 12211 2234555666777889999988888753222222 236888
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------cchHH
Q 003439 591 MVDLFGRAGHLGMAHNFIQNMP-----V---RPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSEN------VGYYV 655 (820)
Q Consensus 591 li~~~~~~g~~~eA~~~~~~m~-----~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 655 (820)
+...|...|++++|.+.++++- . .+. ..+|..+...|...|++++|+..+++++++.+.. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888999999999888887661 1 122 2378889999999999999999999998866433 55788
Q ss_pred hHHHHhhhcCC-cchHHHHHHHHHh
Q 003439 656 LMSNIYANVGK-WEGVDEVRSLARD 679 (820)
Q Consensus 656 ~l~~~y~~~g~-~~~A~~~~~~m~~ 679 (820)
.++.+|.+.|+ +++|.+.++++.+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 5999999988764
No 118
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.52 E-value=6.4e-07 Score=80.94 Aligned_cols=95 Identities=15% Similarity=0.041 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh
Q 003439 586 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 663 (820)
Q Consensus 586 ~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 663 (820)
..+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 44556677788888888888888876 3344 567899999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHhC
Q 003439 664 VGKWEGVDEVRSLARDR 680 (820)
Q Consensus 664 ~g~~~~A~~~~~~m~~~ 680 (820)
.|++++|...++...+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988765
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.51 E-value=1.1e-06 Score=90.44 Aligned_cols=163 Identities=7% Similarity=-0.040 Sum_probs=118.8
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC----hhH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-----ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKH 587 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~ 587 (820)
+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|.+.++...+...-..+ ...
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344566777888888998888888774221111 12334555667788999999998887642111111 347
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC------Ccc
Q 003439 588 YGCMVDLFGRAGHLGMAHNFIQNM----PVRPD-----ASIWGALLGACRIHGNMELGAVASDRLFEVDSE------NVG 652 (820)
Q Consensus 588 ~~~li~~~~~~g~~~eA~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 652 (820)
|+.+...|...|++++|.+.++++ ...|+ ..+|..+...|...|++++|+..+++++++.++ -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 888899999999999999988775 11222 258889999999999999999999999886542 145
Q ss_pred hHHhHHHHhhhcCCcchH-HHHHHHHHh
Q 003439 653 YYVLMSNIYANVGKWEGV-DEVRSLARD 679 (820)
Q Consensus 653 ~~~~l~~~y~~~g~~~~A-~~~~~~m~~ 679 (820)
.|..++.+|...|++++| ...++++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 678899999999999999 777777654
No 120
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.50 E-value=8.5e-05 Score=82.10 Aligned_cols=366 Identities=13% Similarity=0.068 Sum_probs=173.8
Q ss_pred hCC-ChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCC-HHHH
Q 003439 221 QSG-NAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGM-MRHA 298 (820)
Q Consensus 221 ~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A 298 (820)
+.| +++.|..+|+.+... -|. ++.+.+.++|+..++. .|++..|...+..-.+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377777777777542 122 7888888888888874 4688888888777766653 3445
Q ss_pred HHHHhccC------CCCchHHHHHHHHHHh----CCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhc---Ccchhhh
Q 003439 299 LRVFDQMM------ERDVVSWNSIIAAYEQ----SNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQL---NDCRNSR 365 (820)
Q Consensus 299 ~~~f~~m~------~~d~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~---~~~~~a~ 365 (820)
..+|+... ..+...|...+.-+.. +|+.+.+..+|++.... |. ..+..+...|... .+...+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~-~~~~~lw~~Y~~fE~~~~~~~~~ 143 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PM-GSLSELWKDFENFELELNKITGK 143 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CC-TTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hh-hhHHHHHHHHHHHHHHhccccHH
Confidence 55555432 1345667777765432 35567778888887762 21 1122222222211 1111111
Q ss_pred hHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCC----CCCchHHHHHHHHHHHcC--C-----hHHHHHH
Q 003439 366 SVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP----VKDVISWNTLITGYAQNG--L-----ASEAIEV 434 (820)
Q Consensus 366 ~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g--~-----~~~A~~l 434 (820)
.+... + .+.+..|+.+++.+. ..+...|...+.--..++ - .+.+..+
T Consensus 144 ~~~~~--------------------~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ 201 (493)
T 2uy1_A 144 KIVGD--------------------T--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFI 201 (493)
T ss_dssp HHHHH--------------------H--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred HHHHH--------------------H--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHH
Confidence 11111 0 011222222222111 113335554444322211 0 2345567
Q ss_pred HHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHhhCC---
Q 003439 435 FQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDA-MSLFYQVP--- 510 (820)
Q Consensus 435 ~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A-~~~~~~~~--- 510 (820)
|+++.. . .+-+...+...+.-+...|+++.|..+++..++. +.+...+. .|+...+.++. ..+.+...
T Consensus 202 ye~al~-~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~ 273 (493)
T 2uy1_A 202 HNYILD-S-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHH-H-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC---
T ss_pred HHHHHH-c-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhc
Confidence 777665 1 1222334444555556677778888888877776 22322222 22222111111 11111110
Q ss_pred ---------CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH-hcCCHHHHHHHHHHhHHhhC
Q 003439 511 ---------RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS-HSGLVSEGQRYFHMMQEEFG 580 (820)
Q Consensus 511 ---------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~g 580 (820)
......|-..+....++++.+.|..+|++. .. ..++...|......-. ..++.+.|..+|+...+.++
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~ 351 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP 351 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence 000122555555555556666666666666 21 1112222221111111 12246666666666665432
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 003439 581 IKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLF 644 (820)
Q Consensus 581 ~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 644 (820)
- ++..+...++...+.|+.+.|..+|+++. .....|...+.--..+|+.+.+..++++..
T Consensus 352 ~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 352 D--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp T--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 22334445666666666666666666652 234566666665556666666666555544
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.44 E-value=1.5e-05 Score=81.57 Aligned_cols=178 Identities=13% Similarity=0.157 Sum_probs=118.5
Q ss_pred CHHHHHHHHhhCC---CCCccccchHHHHH----Hhc---CChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHH
Q 003439 498 RIDDAMSLFYQVP---RSSSVPWNAIISCH----GIH---GQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVS 566 (820)
Q Consensus 498 ~~~~A~~~~~~~~---~~~~~~~~~li~~~----~~~---g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 566 (820)
+++++++.++.+. +++...|+.-...+ ... +++++++++++++.+. .| |...|..-.....+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~ 161 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHN 161 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTT
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccC
Confidence 5555555555444 33333444433333 333 5677888888888774 44 4456666666667777776
Q ss_pred --HHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh-H
Q 003439 567 --EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH------LGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNME-L 635 (820)
Q Consensus 567 --~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~------~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~-~ 635 (820)
+++++++.+.+. -.-|...|+.-..++.+.|+ ++++++.++++ ...| |...|+.+...+.+.|+.. .
T Consensus 162 ~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~ 239 (306)
T 3dra_A 162 DAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQ 239 (306)
T ss_dssp CHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGG
T ss_pred hHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHH
Confidence 777877777753 12244566665666666665 78888887766 3334 6778888888888877744 4
Q ss_pred HHHHHHHHhccC---CCCcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 636 GAVASDRLFEVD---SENVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 636 a~~~~~~~~~~~---p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
....++++++++ |.++.++..++++|.+.|+.++|.++++.+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 240 LEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 556777777766 77777888888888888888888888888875
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.43 E-value=5.3e-06 Score=80.49 Aligned_cols=144 Identities=8% Similarity=-0.087 Sum_probs=93.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCC
Q 003439 486 ATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGL 564 (820)
Q Consensus 486 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 564 (820)
+..+...|...|++++|...|++...++...|..+...|...|++++|++.|++..+. .| +...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHccc
Confidence 3445566777788888888887777666667777777777777777777777777774 34 34466667777777777
Q ss_pred HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003439 565 VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPD-ASIWGALLGACRIHGNMELGAVASDRL 643 (820)
Q Consensus 565 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 643 (820)
+++|.+.|+...+. .|+..... +...| +...|+ ..+|..+..++...|++++|+..++++
T Consensus 87 ~~~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777766643 12110000 00000 012233 246777777888888888888888888
Q ss_pred hccCCCC
Q 003439 644 FEVDSEN 650 (820)
Q Consensus 644 ~~~~p~~ 650 (820)
+++.|++
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 8888865
No 123
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.42 E-value=1.1e-06 Score=77.42 Aligned_cols=95 Identities=15% Similarity=0.064 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh
Q 003439 586 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 663 (820)
Q Consensus 586 ~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 663 (820)
..+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35566677777888888888888776 3334 567888888899999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHhC
Q 003439 664 VGKWEGVDEVRSLARDR 680 (820)
Q Consensus 664 ~g~~~~A~~~~~~m~~~ 680 (820)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 99999999998888765
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.42 E-value=2.7e-07 Score=94.44 Aligned_cols=191 Identities=12% Similarity=-0.001 Sum_probs=128.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 003439 482 DVFVATCLVDMYGKCGRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLT 557 (820)
Q Consensus 482 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 557 (820)
+...+..+...|.+.|++++|...|++.. +.+...|..+..+|...|++++|+..+++.++ +.|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 34456667777788888888888887665 44566678888888888888888888888887 4565 457778888
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 003439 558 ACSHSGLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELG 636 (820)
Q Consensus 558 a~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 636 (820)
++...|++++|...|+...+. .|+. ..+...+....+.++...... .......++..+...+.. + ..|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 888999999999988877643 2211 111112222222221112122 222233344444444433 2 36889999
Q ss_pred HHHHHHHhccCCCCcchHHhHHHHhhhc-CCcchHHHHHHHHHhC
Q 003439 637 AVASDRLFEVDSENVGYYVLMSNIYANV-GKWEGVDEVRSLARDR 680 (820)
Q Consensus 637 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~A~~~~~~m~~~ 680 (820)
++.++++++++|++......+..++.+. +++++|.++|+++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998887777788777776 7789999999887653
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.40 E-value=3.1e-06 Score=73.63 Aligned_cols=114 Identities=17% Similarity=0.188 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 003439 550 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV-RPDASIWGALLGAC 627 (820)
Q Consensus 550 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~-~p~~~~~~~ll~~~ 627 (820)
..+..+...+...|++++|.++++.+.+. .+.+...+..+...|.+.|++++|...++++ .. +.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45666667777777777777777777643 1234566777777788888888888877766 22 33566888888999
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcC
Q 003439 628 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 665 (820)
Q Consensus 628 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 665 (820)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999998888888888776654
No 126
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.39 E-value=5.9e-06 Score=80.38 Aligned_cols=172 Identities=6% Similarity=-0.096 Sum_probs=126.2
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCccccchHHHHHHhcC----ChHHHHHHHHHHH
Q 003439 467 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-RSSSVPWNAIISCHGIHG----QGDKALNFFRQML 541 (820)
Q Consensus 467 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~ 541 (820)
|.+.+....+.| ++..+..|..+|...+++++|.+.|++.. ..+...+..|...|.. + ++++|+++|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 455566665554 56667777777878888888888887765 4455567777777776 6 8889999998887
Q ss_pred HcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHhHHhhCCCCC---hhHHHHHHHHHHH----cCCHHHHHHHHHh
Q 003439 542 DEGVRPDHITFVSLLTACSH----SGLVSEGQRYFHMMQEEFGIKPH---LKHYGCMVDLFGR----AGHLGMAHNFIQN 610 (820)
Q Consensus 542 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~g~~p~---~~~~~~li~~~~~----~g~~~eA~~~~~~ 610 (820)
+.| +...+..|...|.. .+++++|.++|+...+ ..|. ...+..|..+|.. .++.++|.+.|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 55667777777776 7889999999887763 3443 6778888888888 7889999999988
Q ss_pred C-CCCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHhccCC
Q 003439 611 M-PVRPDASIWGALLGACRIH-G-----NMELGAVASDRLFEVDS 648 (820)
Q Consensus 611 m-~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 648 (820)
. ...++...+..|...|... | +.++|+..++++.+...
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7 3334556777777777643 3 88999999999887654
No 127
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.39 E-value=2.1e-05 Score=87.03 Aligned_cols=101 Identities=7% Similarity=-0.060 Sum_probs=56.6
Q ss_pred CC-ChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC--CCchHHHHHHHHHHhCCC-hhhHHHH
Q 003439 257 SD-NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME--RDVVSWNSIIAAYEQSND-PITAHGF 332 (820)
Q Consensus 257 ~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~-~~~A~~~ 332 (820)
.| +++.|+.+++.++..- |. |+.+.+..+|++... |++..|...+.-..+.+. .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 45 3777777777776542 11 889999999988765 788888887777666553 3455666
Q ss_pred HHHHHHc-CCCC-CcchHHHHHHHHH----hcCcchhhhhHHHHHHH
Q 003439 333 FTTMQQA-GIQP-DLLTLVSLTSIVA----QLNDCRNSRSVHGFIMR 373 (820)
Q Consensus 333 ~~~m~~~-g~~p-d~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~ 373 (820)
|+..... |..| +...|...+.-+. ..++.+.++.+++.++.
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 6665543 4333 2233333333322 12345556666666654
No 128
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.39 E-value=5.8e-07 Score=94.57 Aligned_cols=126 Identities=6% Similarity=-0.067 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC----------------hhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 003439 551 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----------------LKHYGCMVDLFGRAGHLGMAHNFIQNM-PV 613 (820)
Q Consensus 551 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~----------------~~~~~~li~~~~~~g~~~eA~~~~~~m-~~ 613 (820)
.+..+...+...|++++|.+.|+...+. .|+ ...|..+..+|.+.|++++|++.+++. ..
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555555666666666666666655532 232 367888889999999999999999877 34
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchH-HHHHHHHHh
Q 003439 614 RP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGV-DEVRSLARD 679 (820)
Q Consensus 614 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A-~~~~~~m~~ 679 (820)
.| +...|..+..++...|++++|+..++++++++|++...+..++.++...|++++| ...++.|.+
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 5669999999999999999999999999999999999999999999999999999 456666643
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.38 E-value=9.4e-07 Score=88.36 Aligned_cols=181 Identities=7% Similarity=-0.050 Sum_probs=111.6
Q ss_pred hcCCHHHHHHHHhhCC---CCCccccchH-------HHHHHhcCChHHHHHHHHHHHHcCCCCChh--------------
Q 003439 495 KCGRIDDAMSLFYQVP---RSSSVPWNAI-------ISCHGIHGQGDKALNFFRQMLDEGVRPDHI-------------- 550 (820)
Q Consensus 495 ~~g~~~~A~~~~~~~~---~~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------------- 550 (820)
..++.+.|.+.|.++. +.....|+.+ ...+...++..+++..+++-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 3566666666666555 2333446555 3444444444444444444333 333321
Q ss_pred --------HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH----H
Q 003439 551 --------TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDA----S 618 (820)
Q Consensus 551 --------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~----~ 618 (820)
....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 122345566777888888888776652 2354335555566777888888888888766433332 3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccC--CC-CcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 619 IWGALLGACRIHGNMELGAVASDRLFEVD--SE-NVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 619 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
++..+..++...|++++|+..++++..-. |. .+.....++.++.+.|+.++|...++++.+.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66677777888888888888888876433 43 3446667788888888888888888887765
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.38 E-value=3.1e-06 Score=74.37 Aligned_cols=117 Identities=9% Similarity=0.006 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003439 550 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGAC 627 (820)
Q Consensus 550 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~ 627 (820)
..+..+...+...|++++|.+.++..... .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45666677777788888888888777643 1234567777778888888888888887765 2334 466888888999
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcc
Q 003439 628 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWE 668 (820)
Q Consensus 628 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 668 (820)
...|++++|...+++++++.|++...+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999998888764
No 131
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.37 E-value=3.7e-05 Score=78.68 Aligned_cols=226 Identities=7% Similarity=0.010 Sum_probs=163.1
Q ss_pred CChHHHHHHHHhhhhcCCCCCCcccH-hhHHHHhhccC--ChhHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc--
Q 003439 426 GLASEAIEVFQMMEECNEINPNQGTY-VSILPAYSHVG--ALRQGIKIHARVIKNCLCFDVFVATCLVDMY----GKC-- 496 (820)
Q Consensus 426 g~~~~A~~l~~~m~~~~g~~pd~~t~-~~ll~a~~~~~--~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y----~~~-- 496 (820)
...++|+++++.+.. +.|+..|. +.--..+...+ .++++.+.++.++....+ +..+++.--..+ .+.
T Consensus 47 e~s~~aL~~t~~~L~---~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 47 EYSERALHITELGIN---ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp CCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHH---HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccc
Confidence 344678888887777 67766553 33333444555 778888888877776533 333444333333 444
Q ss_pred -CCHHHHHHHHhhCC---CCCccccchHHHHHHhcCChH--HHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCC-----
Q 003439 497 -GRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQGD--KALNFFRQMLDEGVRP-DHITFVSLLTACSHSGL----- 564 (820)
Q Consensus 497 -g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~----- 564 (820)
++++++.++++++. +++...|+--.-.+.+.|.++ ++++.++++++. .| |...|+.-.....+.+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 78889999888877 566677877777777888887 999999999995 44 55677766666777776
Q ss_pred -HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCChhHHH
Q 003439 565 -VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGM-AHNFIQNM-PV----RPDASIWGALLGACRIHGNMELGA 637 (820)
Q Consensus 565 -~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~e-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~a~ 637 (820)
+++++++++.+... -.-|...|+.+..++.+.|+..+ +.++.++. .. ..+...+..+...+.+.|+.++|+
T Consensus 201 ~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 201 TIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 89999999888853 23366788888899999888544 55677665 22 236779999999999999999999
Q ss_pred HHHHHHhc-cCCCCcchHHhHHH
Q 003439 638 VASDRLFE-VDSENVGYYVLMSN 659 (820)
Q Consensus 638 ~~~~~~~~-~~p~~~~~~~~l~~ 659 (820)
++++.+.+ .+|-...++...+.
T Consensus 279 ~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHhccChHHHHHHHHHHh
Confidence 99999996 89988877765544
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.37 E-value=3.1e-06 Score=78.23 Aligned_cols=127 Identities=9% Similarity=-0.008 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003439 551 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACR 628 (820)
Q Consensus 551 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 628 (820)
.+..+...+...|++++|...|+...+. .+.+...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555666677777777777777776643 1224566777777777888888888777765 2233 5668888888999
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHh--HHHHhhhcCCcchHHHHHHHHHh
Q 003439 629 IHGNMELGAVASDRLFEVDSENVGYYVL--MSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 629 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~--l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
..|++++|+..+++++++.|++...+.. ++..+...|++++|...++...+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999988887754 44448888999999988877653
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.36 E-value=2.6e-06 Score=75.34 Aligned_cols=114 Identities=9% Similarity=0.027 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 003439 550 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGA 626 (820)
Q Consensus 550 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~ 626 (820)
..+..+...+...|++++|.+.++...+ ..| +...+..+...|...|++++|.+.+++. ...| +..+|..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3555566666666677777766666552 233 4556666666777777777777777665 2233 46688888888
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCC
Q 003439 627 CRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGK 666 (820)
Q Consensus 627 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 666 (820)
+...|++++|+..++++++++|++...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999888888888888877664
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.36 E-value=1.8e-06 Score=86.40 Aligned_cols=135 Identities=10% Similarity=-0.027 Sum_probs=103.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC--hhHHHHHHHHHHH
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH--LKHYGCMVDLFGR 597 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~--~~~~~~li~~~~~ 597 (820)
+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHH
Confidence 567788889999999999888773 476555556666888999999999999754311 1 121 2367778899999
Q ss_pred cCCHHHHHHHHHhCC---CCCC-H-HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHH
Q 003439 598 AGHLGMAHNFIQNMP---VRPD-A-SIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSN 659 (820)
Q Consensus 598 ~g~~~eA~~~~~~m~---~~p~-~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 659 (820)
.|++++|++.|++.. ..|. . ..+..+..++...|+.++|...|++++..+|+ ......|.+
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 999999999999872 2253 3 37778888999999999999999999999997 666655543
No 135
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.32 E-value=4.7e-05 Score=78.13 Aligned_cols=158 Identities=8% Similarity=-0.049 Sum_probs=119.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCc---c------ccchHHHHHHhcCChHHHHHHHHHHHHcCCC-CCh----hHHHH
Q 003439 489 LVDMYGKCGRIDDAMSLFYQVPRSSS---V------PWNAIISCHGIHGQGDKALNFFRQMLDEGVR-PDH----ITFVS 554 (820)
Q Consensus 489 li~~y~~~g~~~~A~~~~~~~~~~~~---~------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ 554 (820)
.+..+.+.|++++|.+++++...... . .+..+...+...|++++|+..|++..+.... ++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46778889999999999987653211 1 1334666677788999999999999984332 232 26888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhC----CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFG----IKPH-LKHYGCMVDLFGRAGHLGMAHNFIQNM-------PVRPD-ASIWG 621 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g----~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-------~~~p~-~~~~~ 621 (820)
+..+|...|++++|.++|+.+.+... ..+. ..++..+...|.+.|++++|.+.+++. ...+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999998875321 1121 247888999999999999999998866 12223 56899
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHhcc
Q 003439 622 ALLGACRIHGN-MELGAVASDRLFEV 646 (820)
Q Consensus 622 ~ll~~~~~~g~-~~~a~~~~~~~~~~ 646 (820)
.+..++...|+ .++|+..+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999995 59999999998764
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.30 E-value=3.3e-06 Score=79.38 Aligned_cols=94 Identities=11% Similarity=0.108 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCh--hHHHHHHHHHhccCCCCcchHHhHHHHh
Q 003439 587 HYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGA-CRIHGNM--ELGAVASDRLFEVDSENVGYYVLMSNIY 661 (820)
Q Consensus 587 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~--~~a~~~~~~~~~~~p~~~~~~~~l~~~y 661 (820)
.+..+...|...|++++|.+.+++. ...| +...|..+... +...|++ ++|+..++++++.+|+++..+..++.+|
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 125 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDA 125 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3334444444444444444444433 1122 34455666666 5566776 7777777777777777777777777777
Q ss_pred hhcCCcchHHHHHHHHHhC
Q 003439 662 ANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 662 ~~~g~~~~A~~~~~~m~~~ 680 (820)
...|++++|...++++.+.
T Consensus 126 ~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 126 FMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHTTCHHHHHHHHHHHHHT
T ss_pred HHcccHHHHHHHHHHHHhh
Confidence 7777777777777776654
No 137
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.28 E-value=9.8e-07 Score=80.35 Aligned_cols=114 Identities=9% Similarity=-0.011 Sum_probs=89.3
Q ss_pred HHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 003439 537 FRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV 613 (820)
Q Consensus 537 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~ 613 (820)
|++++. +.|+. ..+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|.+.|++. ..
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 444444 45644 46667777888899999999999888753 34 5677788888899999999999998876 34
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 003439 614 RP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 614 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 655 (820)
.| +...|..+..++...|++++|+..+++++++.|+++....
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 44 4568888999999999999999999999999998776543
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.26 E-value=1.9e-05 Score=81.10 Aligned_cols=162 Identities=7% Similarity=-0.055 Sum_probs=119.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CCc------cccchHHHHHHhcCChHHHHHHHHHHHHcCCC---CC--hh
Q 003439 485 VATCLVDMYGKCGRIDDAMSLFYQVPR---SSS------VPWNAIISCHGIHGQGDKALNFFRQMLDEGVR---PD--HI 550 (820)
Q Consensus 485 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p~--~~ 550 (820)
.+...+..+...|++++|.+.+++..+ ... ..+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444567778889999999988875431 111 11334556677889999999999998863221 11 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CC------CCC-H
Q 003439 551 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-----LKHYGCMVDLFGRAGHLGMAHNFIQNM-PV------RPD-A 617 (820)
Q Consensus 551 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~m-~~------~p~-~ 617 (820)
+++.+...|...|++++|.++|+...+.....|+ ...+..+...|.+.|++++|.+.+++. .. ... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888899999999999999999988733222232 258888999999999999999999876 11 111 5
Q ss_pred HHHHHHHHHHHhcCChhHH-HHHHHHHhcc
Q 003439 618 SIWGALLGACRIHGNMELG-AVASDRLFEV 646 (820)
Q Consensus 618 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 646 (820)
.+|..+...+...|+.++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6888999999999999999 7878888753
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.25 E-value=3e-06 Score=77.10 Aligned_cols=104 Identities=6% Similarity=-0.032 Sum_probs=87.9
Q ss_pred CCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHH
Q 003439 545 VRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIW 620 (820)
Q Consensus 545 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~ 620 (820)
+.|+. ..+..+...+.+.|++++|.+.|+..... .| +...|..+..+|.+.|++++|.+.|++. .+.|+ ...|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 45654 46778888899999999999999998853 45 5678889999999999999999999887 44554 5689
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 003439 621 GALLGACRIHGNMELGAVASDRLFEVDSENV 651 (820)
Q Consensus 621 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 651 (820)
..+..++...|++++|+..|++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999654
No 140
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.25 E-value=6.8e-06 Score=73.20 Aligned_cols=97 Identities=9% Similarity=-0.038 Sum_probs=78.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHh
Q 003439 584 HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 661 (820)
Q Consensus 584 ~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 661 (820)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4556667777777777777777777765 2333 4668888888888899999999999999999998888899999999
Q ss_pred hhcCCcchHHHHHHHHHhC
Q 003439 662 ANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 662 ~~~g~~~~A~~~~~~m~~~ 680 (820)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999888888764
No 141
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.25 E-value=4.3e-06 Score=71.14 Aligned_cols=97 Identities=12% Similarity=0.054 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CcchHHhHHHH
Q 003439 585 LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVR-PDASIWGALLGACRIHGNMELGAVASDRLFEVDSE--NVGYYVLMSNI 660 (820)
Q Consensus 585 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 660 (820)
...+..+...+.+.|++++|.+.+++. ... .+..+|..+...+...|++++|+..+++++++.|+ +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 345555666667777777777777665 222 34567788888888888888888888888888888 88888888888
Q ss_pred hhhc-CCcchHHHHHHHHHhCC
Q 003439 661 YANV-GKWEGVDEVRSLARDRG 681 (820)
Q Consensus 661 y~~~-g~~~~A~~~~~~m~~~~ 681 (820)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 88888888888877653
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.24 E-value=4.1e-06 Score=77.64 Aligned_cols=95 Identities=11% Similarity=0.075 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh
Q 003439 586 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN 663 (820)
Q Consensus 586 ~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 663 (820)
..+..+...|.+.|++++|.+.|++. ...| +...|..+...+...|++++|+..++++++++|++...+..++.+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34455555556666666666666554 2233 455666666667777777777777777777777777777777777777
Q ss_pred cCCcchHHHHHHHHHhC
Q 003439 664 VGKWEGVDEVRSLARDR 680 (820)
Q Consensus 664 ~g~~~~A~~~~~~m~~~ 680 (820)
.|++++|...+++..+.
T Consensus 92 ~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIEA 108 (164)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHh
Confidence 77777777776666554
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.23 E-value=9.6e-06 Score=69.62 Aligned_cols=92 Identities=8% Similarity=0.039 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcC
Q 003439 588 YGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVG 665 (820)
Q Consensus 588 ~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 665 (820)
+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|...|
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 333444444444455444444443 1122 33445555555555555555555555555555555555555555555555
Q ss_pred CcchHHHHHHHHHh
Q 003439 666 KWEGVDEVRSLARD 679 (820)
Q Consensus 666 ~~~~A~~~~~~m~~ 679 (820)
++++|.+.+++..+
T Consensus 87 ~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 87 RFEEAKRTYEEGLK 100 (118)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555443
No 144
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.23 E-value=4.9e-06 Score=76.89 Aligned_cols=64 Identities=9% Similarity=0.065 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 617 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 617 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..+|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3588888889999999999999999999999999999999999999999999999999988765
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.22 E-value=8.2e-07 Score=85.43 Aligned_cols=170 Identities=8% Similarity=-0.040 Sum_probs=97.4
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 003439 490 VDMYGKCGRIDDAMSLFYQVPR---SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVS 566 (820)
Q Consensus 490 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 566 (820)
+......|++++|.+.++.-.. .....|..+...+...|++++|++.|++.++ +.|+...+... ...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------hHH
Confidence 3344445556655555543221 1222355555566666666666666666665 22322110000 000
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 003439 567 EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLF 644 (820)
Q Consensus 567 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 644 (820)
.-. ..+ ....+..+..+|.+.|++++|.+.+++. ...| +..+|..+..++...|++++|+..+++++
T Consensus 81 ~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 81 DKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 000 000 1246677788888888888888888776 3344 56688899999999999999999999999
Q ss_pred ccCCCCcchHHhHHHHhhhcCCcchHH-HHHHHHHhC
Q 003439 645 EVDSENVGYYVLMSNIYANVGKWEGVD-EVRSLARDR 680 (820)
Q Consensus 645 ~~~p~~~~~~~~l~~~y~~~g~~~~A~-~~~~~m~~~ 680 (820)
+++|++...+..++.++...|+.+++. ..++.|..+
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999988888776 455555443
No 146
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.22 E-value=6.1e-06 Score=91.16 Aligned_cols=157 Identities=11% Similarity=0.043 Sum_probs=107.2
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDL 594 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~ 594 (820)
|..+...+.+.|++++|++.|++.++. .|+ ..++..+..++.+.|++++|.+.+++..+ +.| +...+..+..+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAAS 83 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 455556677788999999999988884 564 56788888889999999999999988874 344 46778888889
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH--HHhcCChhHHHHHHH-----------HHhccCCCCcchH-----
Q 003439 595 FGRAGHLGMAHNFIQNM-PVRPD-ASIWGALLGA--CRIHGNMELGAVASD-----------RLFEVDSENVGYY----- 654 (820)
Q Consensus 595 ~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~--~~~~g~~~~a~~~~~-----------~~~~~~p~~~~~~----- 654 (820)
|.+.|++++|.+.+++. ...|+ ...|..+..+ +...|++++|+..++ ++++++|+....+
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 163 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGK 163 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGS
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccccccccc
Confidence 99999999999988876 33343 3355555555 778899999999998 7777776643322
Q ss_pred ------HhHHHHhhhcCCcchHH--HHHHHHH
Q 003439 655 ------VLMSNIYANVGKWEGVD--EVRSLAR 678 (820)
Q Consensus 655 ------~~l~~~y~~~g~~~~A~--~~~~~m~ 678 (820)
..+...+...+.+.+.. .+..++.
T Consensus 164 itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~ 195 (477)
T 1wao_1 164 VTISFMKELMQWYKDQKKLHRKCAYQILVQVK 195 (477)
T ss_dssp CCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 23445555666666543 3444443
No 147
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.21 E-value=2.6e-06 Score=74.46 Aligned_cols=94 Identities=10% Similarity=-0.060 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhc
Q 003439 587 HYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANV 664 (820)
Q Consensus 587 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 664 (820)
.+..+...+.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..|+.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3445667778888888888888876 3445 5668888888999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhC
Q 003439 665 GKWEGVDEVRSLARDR 680 (820)
Q Consensus 665 g~~~~A~~~~~~m~~~ 680 (820)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999888754
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.21 E-value=2e-05 Score=75.57 Aligned_cols=152 Identities=11% Similarity=0.001 Sum_probs=90.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhh---CCCC-ChhHHHHHHHHHHHcCC
Q 003439 526 IHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEF---GIKP-HLKHYGCMVDLFGRAGH 600 (820)
Q Consensus 526 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---g~~p-~~~~~~~li~~~~~~g~ 600 (820)
..|++++|.+.++.+.. .++ ...++..+...+...|++++|...+++..+.. +..| ....+..+...|...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 34566666664433322 111 23355556666666666666666666655321 1111 23456666667777777
Q ss_pred HHHHHHHHHhC-C---CCC-C----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--Cc----chHHhHHHHhhhcC
Q 003439 601 LGMAHNFIQNM-P---VRP-D----ASIWGALLGACRIHGNMELGAVASDRLFEVDSE--NV----GYYVLMSNIYANVG 665 (820)
Q Consensus 601 ~~eA~~~~~~m-~---~~p-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~----~~~~~l~~~y~~~g 665 (820)
+++|.+.+++. . ..+ + ..++..+...+...|++++|+..+++++++.+. +. ..+..++.+|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777766654 1 112 2 235677777788888888888888887764321 21 23467888888999
Q ss_pred CcchHHHHHHHHHh
Q 003439 666 KWEGVDEVRSLARD 679 (820)
Q Consensus 666 ~~~~A~~~~~~m~~ 679 (820)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999888877764
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.21 E-value=1.3e-05 Score=69.45 Aligned_cols=96 Identities=17% Similarity=0.235 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhh
Q 003439 585 LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVR-PDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 662 (820)
Q Consensus 585 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 662 (820)
...+..+...+.+.|++++|.+.++++ ... .+..+|..+...+...|++++|+..++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 467788899999999999999999987 223 357789999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhC
Q 003439 663 NVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 663 ~~g~~~~A~~~~~~m~~~ 680 (820)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998765
No 150
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=1.3e-05 Score=72.23 Aligned_cols=105 Identities=8% Similarity=-0.032 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 003439 551 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALL 624 (820)
Q Consensus 551 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll 624 (820)
.+..+...+...|++++|.+.|+... ...|+ ...+..+...|.+.|++++|.+.+++. ...| +...|..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 44445555555555555555555544 23343 334444444455555555555444443 1122 233444444
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchHHhHH
Q 003439 625 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 658 (820)
Q Consensus 625 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 658 (820)
.++...|++++|+..++++++++|++...+..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 4444555555555555555555554444443333
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.20 E-value=1e-05 Score=71.39 Aligned_cols=97 Identities=10% Similarity=0.046 Sum_probs=88.1
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHh
Q 003439 584 HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 661 (820)
Q Consensus 584 ~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 661 (820)
+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..+++++++.|+++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4567888899999999999999999987 4455 5679999999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHhC
Q 003439 662 ANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 662 ~~~g~~~~A~~~~~~m~~~ 680 (820)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999998765
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.19 E-value=2.5e-06 Score=75.31 Aligned_cols=94 Identities=7% Similarity=-0.008 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc-------hHHhH
Q 003439 587 HYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVG-------YYVLM 657 (820)
Q Consensus 587 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l 657 (820)
.+..+...|.+.|++++|++.|++. .+.| +..+|..+..+|...|++++|+..++++++++|++.. .|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4566788888889999999888876 4455 4668999999999999999999999999999987654 56678
Q ss_pred HHHhhhcCCcchHHHHHHHHHhC
Q 003439 658 SNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 658 ~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+.+|...|++++|.+.+++..+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 89999999999999999987754
No 153
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.19 E-value=1.4e-06 Score=78.51 Aligned_cols=62 Identities=6% Similarity=-0.016 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc-------CCCCcchH----HhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 619 IWGALLGACRIHGNMELGAVASDRLFEV-------DSENVGYY----VLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 619 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.|..+..++...|++++|+..+++++++ +|++...| ..++.++...|++++|...+++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7888888888888888888888888888 99888888 88999999999999999998888764
No 154
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.16 E-value=7.3e-06 Score=76.96 Aligned_cols=128 Identities=8% Similarity=0.100 Sum_probs=101.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHH-HHHcCCH
Q 003439 524 HGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL-FGRAGHL 601 (820)
Q Consensus 524 ~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~-~~~~g~~ 601 (820)
+...|++++|+..+++..+. .| +...+..+...+...|++++|...|+...+.. +.+...+..+..+ |.+.|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCc
Confidence 34678889999999998885 45 45688888999999999999999999988542 2356677888888 7789998
Q ss_pred --HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 003439 602 --GMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 602 --~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 655 (820)
++|.+.++++ ...| +...|..+...+...|++++|+..+++++++.|++.....
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 9999999887 3345 4668899999999999999999999999999998765443
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=2.5e-05 Score=70.36 Aligned_cols=90 Identities=12% Similarity=-0.036 Sum_probs=45.1
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPD----HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCM 591 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~l 591 (820)
|..+...+...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.++...+. .| +...+..+
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~ 105 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHHHHHHH
Confidence 44455555555555555555555554 3344 234444455555555555555555554432 22 33444455
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 003439 592 VDLFGRAGHLGMAHNFIQNM 611 (820)
Q Consensus 592 i~~~~~~g~~~eA~~~~~~m 611 (820)
..+|.+.|++++|.+.+++.
T Consensus 106 a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555543
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.15 E-value=2.5e-05 Score=66.91 Aligned_cols=110 Identities=8% Similarity=0.000 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003439 550 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGAC 627 (820)
Q Consensus 550 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~ 627 (820)
..+..+...+...|++++|.+.++..... .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555566666677777777777766643 1224556666777777777777777777665 2233 466788888888
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHhHHHHh
Q 003439 628 RIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 661 (820)
Q Consensus 628 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 661 (820)
...|++++|...++++++..|+++..+..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999998887777666553
No 157
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.14 E-value=1.5e-05 Score=76.53 Aligned_cols=153 Identities=14% Similarity=0.031 Sum_probs=99.3
Q ss_pred hcCCHHHHHH---HHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCCHH
Q 003439 495 KCGRIDDAMS---LFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE----GVRPD-HITFVSLLTACSHSGLVS 566 (820)
Q Consensus 495 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~ 566 (820)
..|++++|.+ .+..-+......|+.+...|...|++++|+..+++..+. |..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3566666666 444333333445666666777777777777777776651 11222 246667777888888888
Q ss_pred HHHHHHHHhHHhhCCCC-C----hhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCh
Q 003439 567 EGQRYFHMMQEEFGIKP-H----LKHYGCMVDLFGRAGHLGMAHNFIQNM----PVRPD----ASIWGALLGACRIHGNM 633 (820)
Q Consensus 567 ~a~~~~~~m~~~~g~~p-~----~~~~~~li~~~~~~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~ 633 (820)
+|.+.++...+...-.+ + ...+..+...+...|++++|.+.+++. +..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888887665422122 1 345777788888889988888888765 11122 22467788888899999
Q ss_pred hHHHHHHHHHhccC
Q 003439 634 ELGAVASDRLFEVD 647 (820)
Q Consensus 634 ~~a~~~~~~~~~~~ 647 (820)
++|...+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887754
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.14 E-value=1.6e-05 Score=69.67 Aligned_cols=97 Identities=13% Similarity=0.064 Sum_probs=87.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHh
Q 003439 584 HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY 661 (820)
Q Consensus 584 ~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 661 (820)
+...+..+...+...|++++|.+.+++. ...| +..+|..+...+...|++++|+..++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3456778888999999999999999987 3334 6778999999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHhC
Q 003439 662 ANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 662 ~~~g~~~~A~~~~~~m~~~ 680 (820)
...|++++|...+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998765
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.13 E-value=2.7e-06 Score=76.74 Aligned_cols=111 Identities=8% Similarity=-0.059 Sum_probs=84.8
Q ss_pred CCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHH
Q 003439 545 VRPDH-ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIW 620 (820)
Q Consensus 545 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~ 620 (820)
+.|+. ..+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|.+.|++. ...| +...|
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 89 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 34533 35556677788888888888888887743 34 5567778888888888888888888876 3344 45578
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHH
Q 003439 621 GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 658 (820)
Q Consensus 621 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 658 (820)
..+..++...|++++|+..+++++++.|+++.......
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 88899999999999999999999999998877655443
No 160
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.11 E-value=6e-06 Score=91.23 Aligned_cols=119 Identities=8% Similarity=0.005 Sum_probs=99.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHG 631 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 631 (820)
+...+...|++++|.+.+++..+. .| +...|..+..+|.+.|++++|.+.+++. ...| +..+|..+..++...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 344566789999999999998854 45 4788999999999999999999999987 4455 4669999999999999
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHhHHHH--hhhcCCcchHHHHHHH
Q 003439 632 NMELGAVASDRLFEVDSENVGYYVLMSNI--YANVGKWEGVDEVRSL 676 (820)
Q Consensus 632 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--y~~~g~~~~A~~~~~~ 676 (820)
++++|+..++++++++|++...+..++.+ +.+.|++++|.+.+++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999988888 8899999999999874
No 161
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.08 E-value=5.3e-06 Score=74.84 Aligned_cols=101 Identities=12% Similarity=-0.037 Sum_probs=70.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-------------hhHHHHHHHHHHHcCCHHHHHHHHHhC-CC------
Q 003439 554 SLLTACSHSGLVSEGQRYFHMMQEEFGIKPH-------------LKHYGCMVDLFGRAGHLGMAHNFIQNM-PV------ 613 (820)
Q Consensus 554 ~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~-------------~~~~~~li~~~~~~g~~~eA~~~~~~m-~~------ 613 (820)
.....+.+.|++++|.+.|+...+- .|+ ...|..+..++.+.|++++|+..+++. .+
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3344445555555555555555432 222 126666667777777777777666654 34
Q ss_pred -CCCHH-HH----HHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhH
Q 003439 614 -RPDAS-IW----GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLM 657 (820)
Q Consensus 614 -~p~~~-~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 657 (820)
.|+.. .| .....++...|++++|+..|+++++++|++...+.-+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 88765 88 9999999999999999999999999999887765544
No 162
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.07 E-value=1.5e-05 Score=69.91 Aligned_cols=109 Identities=8% Similarity=-0.121 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003439 551 TFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACR 628 (820)
Q Consensus 551 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 628 (820)
.+..+...+...|++++|.+.|+...+. -+.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4555566666777777777777766643 1224566777777777777777777777765 3344 4568888888888
Q ss_pred hcCChhHHHHHHHHHhccC------CCCcchHHhHHHHh
Q 003439 629 IHGNMELGAVASDRLFEVD------SENVGYYVLMSNIY 661 (820)
Q Consensus 629 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y 661 (820)
..|++++|+..++++++++ |++......+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 9999999999999999988 77766666665543
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.05 E-value=2e-05 Score=72.91 Aligned_cols=106 Identities=12% Similarity=-0.008 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 003439 550 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGA 626 (820)
Q Consensus 550 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~ 626 (820)
..+..+...+...|++++|.+.|+...+. .| +...|..+..+|.+.|++++|++.+++. ...| +...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45666777778888888888888877743 34 5667778888888888888888888776 3444 46689999999
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCcchHHhHH
Q 003439 627 CRIHGNMELGAVASDRLFEVDSENVGYYVLMS 658 (820)
Q Consensus 627 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 658 (820)
+...|++++|+..++++++++|++...+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999988665544
No 164
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.05 E-value=3.9e-05 Score=70.62 Aligned_cols=125 Identities=13% Similarity=0.003 Sum_probs=78.8
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 595 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 595 (820)
|..+...+...|++++|+..|++..+. .| +..++..+..++...|++++|.+.++...+. .+.+...+..+..+|
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 444555666667777777777776663 34 3456666666777777777777777776643 122455667777777
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHhcCChhHHHHHHHHHhc
Q 003439 596 GRAGHLGMAHNFIQNM-PVRP-DASIWGA--LLGACRIHGNMELGAVASDRLFE 645 (820)
Q Consensus 596 ~~~g~~~eA~~~~~~m-~~~p-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 645 (820)
.+.|++++|.+.+++. ...| +...|.. ++..+...|++++|+..+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 7777777777777665 2233 3334433 33336667778888887776654
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.03 E-value=2.8e-05 Score=68.13 Aligned_cols=95 Identities=11% Similarity=0.050 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------cchHHh
Q 003439 586 KHYGCMVDLFGRAGHLGMAHNFIQNM-PVR-PDASIWGALLGACRIHGNMELGAVASDRLFEVDSEN-------VGYYVL 656 (820)
Q Consensus 586 ~~~~~li~~~~~~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 656 (820)
..+..+...+...|++++|...+++. ... .+..+|..+...+...|++++|...+++++++.|++ ...+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 35566777777788888888877765 223 356688888888999999999999999999988766 777888
Q ss_pred HHHHhhhcCCcchHHHHHHHHHhC
Q 003439 657 MSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 657 l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
++.+|...|++++|.+.++++.+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999988765
No 166
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.02 E-value=2e-05 Score=69.26 Aligned_cols=90 Identities=11% Similarity=0.028 Sum_probs=61.5
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---cchHHhHHHHhh
Q 003439 591 MVDLFGRAGHLGMAHNFIQNM-PVRPDA----SIWGALLGACRIHGNMELGAVASDRLFEVDSEN---VGYYVLMSNIYA 662 (820)
Q Consensus 591 li~~~~~~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~ 662 (820)
+...+.+.|++++|.+.|++. ...|+. ..|..+...+...|++++|+..++++++..|++ +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 445556666666666666654 122322 366667777777778888888888877777777 566777777888
Q ss_pred hcCCcchHHHHHHHHHhC
Q 003439 663 NVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 663 ~~g~~~~A~~~~~~m~~~ 680 (820)
..|++++|...++.+.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888888777777654
No 167
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.01 E-value=1.8e-05 Score=83.03 Aligned_cols=96 Identities=9% Similarity=-0.092 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 003439 585 LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD----------------ASIWGALLGACRIHGNMELGAVASDRLFEVD 647 (820)
Q Consensus 585 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 647 (820)
...+..+...|.+.|++++|.+.|++. ...|+ ..+|..+...+...|++++|+..++++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 457788899999999999999999887 33443 4799999999999999999999999999999
Q ss_pred CCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 648 SENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 648 p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
|+++.++..++.+|...|++++|...++++.+.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998876
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.96 E-value=3e-05 Score=85.19 Aligned_cols=96 Identities=9% Similarity=0.013 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhh
Q 003439 585 LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 662 (820)
Q Consensus 585 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 662 (820)
...|..+..+|.+.|++++|++.++++ ...| +...|..+..+|...|++++|+..|+++++++|++...+..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 367888888999999999999998876 3444 56689999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHH-HHHHHHhC
Q 003439 663 NVGKWEGVDE-VRSLARDR 680 (820)
Q Consensus 663 ~~g~~~~A~~-~~~~m~~~ 680 (820)
..|+++++.+ .++.|..+
T Consensus 397 ~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999998874 45555443
No 169
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.96 E-value=6e-05 Score=72.14 Aligned_cols=94 Identities=12% Similarity=-0.035 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 003439 587 HYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-D----------------ASIWGALLGACRIHGNMELGAVASDRLFEVDS 648 (820)
Q Consensus 587 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 648 (820)
.+..+...+.+.|++++|.+.|++. ...| + ..+|..+..++...|++++|+..++++++++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3444555566666666666666554 1111 1 26888899999999999999999999999999
Q ss_pred CCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 649 ENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 649 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+++..+..++.+|...|++++|...+++..+.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998765
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.96 E-value=4.6e-05 Score=64.56 Aligned_cols=98 Identities=13% Similarity=0.024 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 003439 552 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP---DASIWGALLGAC 627 (820)
Q Consensus 552 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p---~~~~~~~ll~~~ 627 (820)
+..+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 333444444444444444444444432 1112334455555555556666666555554 2233 356777788888
Q ss_pred Hhc-CChhHHHHHHHHHhccCCCCc
Q 003439 628 RIH-GNMELGAVASDRLFEVDSENV 651 (820)
Q Consensus 628 ~~~-g~~~~a~~~~~~~~~~~p~~~ 651 (820)
... |++++|++.++++++..|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888 888888888888888887654
No 171
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.95 E-value=3.9e-06 Score=72.76 Aligned_cols=83 Identities=14% Similarity=0.095 Sum_probs=56.9
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHH
Q 003439 598 AGHLGMAHNFIQNM-PV---RPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDE 672 (820)
Q Consensus 598 ~g~~~eA~~~~~~m-~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~ 672 (820)
.|++++|++.|++. .. .|+ ..+|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46666666666665 33 243 34677777777777888888888888877778777777777888888888888877
Q ss_pred HHHHHHhC
Q 003439 673 VRSLARDR 680 (820)
Q Consensus 673 ~~~~m~~~ 680 (820)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776654
No 172
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.94 E-value=0.00027 Score=73.02 Aligned_cols=178 Identities=12% Similarity=0.056 Sum_probs=105.9
Q ss_pred HHHHHHHHhhCC---CCCccccchHHHHHHhc-C-ChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHH------
Q 003439 499 IDDAMSLFYQVP---RSSSVPWNAIISCHGIH-G-QGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVS------ 566 (820)
Q Consensus 499 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~------ 566 (820)
++++++.++.+. +++...|+.-...+... + ++++++++++++++ ..| |...|+.-.....+.|.++
T Consensus 105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccccccchhh
Confidence 555555555544 33344455544444444 4 56677777777766 344 3345555444444444444
Q ss_pred --HHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCC-------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh--
Q 003439 567 --EGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGH-------LGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNM-- 633 (820)
Q Consensus 567 --~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~-------~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-- 633 (820)
+++++++.+.+. -.-|...|+....++.+.|+ ++++++.++++ ...| |...|+-+-..+.+.|+.
T Consensus 183 ~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 183 WGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcc
Confidence 777777777653 12255566666666666665 67788877765 3344 667888877777776654
Q ss_pred ------------------hHHHHHHHHHhccC------CCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 634 ------------------ELGAVASDRLFEVD------SENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 634 ------------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.........+.... +.++-+...|+++|...|+.++|.++++.+.++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22222222332222 345556678999999999999999999998754
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.92 E-value=0.00047 Score=70.92 Aligned_cols=225 Identities=10% Similarity=0.020 Sum_probs=119.5
Q ss_pred HHcCCh-HHHHHHHHhhhhcCCCCCCcccHh----hHHHHhhcc-------CChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 003439 423 AQNGLA-SEAIEVFQMMEECNEINPNQGTYV----SILPAYSHV-------GALRQGIKIHARVIKNCLCFDVFVATCLV 490 (820)
Q Consensus 423 ~~~g~~-~~A~~l~~~m~~~~g~~pd~~t~~----~ll~a~~~~-------~~~~~a~~i~~~~~~~g~~~~~~~~~~li 490 (820)
.+.|.+ ++|++++..+.. +.|+..|.- .++...... ..++++..+++.+++... -+..+++.-.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~---~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~ 115 (331)
T 3dss_A 40 RQAGELDESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRC 115 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 344554 478888888876 777766532 122222111 114556666666665442 2455555555
Q ss_pred HHHHhcC--CHHHHHHHHhhCC---CCCccccchHHHHHHhcCC-hHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhc-
Q 003439 491 DMYGKCG--RIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQ-GDKALNFFRQMLDEGVRP-DHITFVSLLTACSHS- 562 (820)
Q Consensus 491 ~~y~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~- 562 (820)
-.+.+.| .++++..+++++. ++|...|+--.-.+...|. .+++++.++++++. .| |...|+.....+.+.
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHS
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhh
Confidence 5555555 3667777666665 4455556655555556666 46777777777764 34 334555544444433
Q ss_pred -------------CCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHc-----------CCHHHHHHHHHhC-CCCCC
Q 003439 563 -------------GLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRA-----------GHLGMAHNFIQNM-PVRPD 616 (820)
Q Consensus 563 -------------g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~-----------g~~~eA~~~~~~m-~~~p~ 616 (820)
+.++++++++...... .| |...|+.+-.++.+. +.++++++.++++ ...||
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd 270 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE 270 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc
Confidence 3456666666655532 33 344555444444444 3456666666655 34555
Q ss_pred HHHHHHHHHHH-----HhcCChhHHHHHHHHHhccCCCCcchHHhH
Q 003439 617 ASIWGALLGAC-----RIHGNMELGAVASDRLFEVDSENVGYYVLM 657 (820)
Q Consensus 617 ~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 657 (820)
. .|..+..+. ...|..++....++++.+++|...+.|..|
T Consensus 271 ~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 271 N-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp C-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred c-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 4 343222211 123455566666666666666555555443
No 174
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.90 E-value=3.4e-05 Score=78.63 Aligned_cols=110 Identities=6% Similarity=-0.131 Sum_probs=88.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 003439 548 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD-ASIWGALL 624 (820)
Q Consensus 548 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~-~~~~~~ll 624 (820)
+...+..+...+...|++++|...|+...+. .| +...|..+...|.+.|++++|.+.+++. ...|+ ...|..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4457777888899999999999999988754 44 5678888899999999999999998876 55564 55888888
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHH
Q 003439 625 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNI 660 (820)
Q Consensus 625 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 660 (820)
.++...|++++|+..++++++++|++...+..+++.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 115 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHH
Confidence 899999999999999999999988776555444433
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.89 E-value=5e-05 Score=69.25 Aligned_cols=128 Identities=11% Similarity=0.006 Sum_probs=73.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHH
Q 003439 552 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKHYGCMVDLFGRAGHLGMAHNFIQNM----PVRPD----ASI 619 (820)
Q Consensus 552 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m----~~~p~----~~~ 619 (820)
+..+...+...|++++|.+.++...+...-.++ ...+..+...|...|++++|.+.+++. +..++ ..+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 333444444455555555555444322110011 124455555556666666666555543 00111 335
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCC------CcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 620 WGALLGACRIHGNMELGAVASDRLFEVDSE------NVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 620 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
+..+...+...|++++|+..+++++++.+. ....+..++.+|...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666777777888888888888877764321 234566788888889999998888887764
No 176
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.89 E-value=5.3e-05 Score=67.28 Aligned_cols=100 Identities=6% Similarity=-0.137 Sum_probs=76.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 003439 548 DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLG 625 (820)
Q Consensus 548 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~ 625 (820)
+...+..+...+...|++++|...|...... .+.+...+..+..+|.+.|++++|.+.+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4456777777788888888888888777643 1224567777788888888888888888776 3334 4668888999
Q ss_pred HHHhcCChhHHHHHHHHHhccCCC
Q 003439 626 ACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 626 ~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
.+...|++++|+..+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999999999999999998887
No 177
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.88 E-value=5.1e-05 Score=83.19 Aligned_cols=125 Identities=10% Similarity=0.024 Sum_probs=94.1
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhC--CCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCHH-HHH
Q 003439 558 ACSHSGLVSEGQRYFHMMQEEFG--IKP----HLKHYGCMVDLFGRAGHLGMAHNFIQNM---------PVRPDAS-IWG 621 (820)
Q Consensus 558 a~~~~g~~~~a~~~~~~m~~~~g--~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~m---------~~~p~~~-~~~ 621 (820)
.+...|++++|..++++..+... +.| ...+++.|..+|...|++++|+.++++. +..|+.. +++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34567788888877776654321 112 1356777888888888888888877665 2445544 889
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhc-----cCCCCcchH---HhHHHHhhhcCCcchHHHHHHHHHhCCC
Q 003439 622 ALLGACRIHGNMELGAVASDRLFE-----VDSENVGYY---VLMSNIYANVGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 622 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~---~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 682 (820)
.|...|...|++++|+.+++++++ +.|+++.+- ..|..++...|++++|..+++.+++...
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999876 567776544 4688889999999999999999987643
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.86 E-value=3.7e-05 Score=67.32 Aligned_cols=108 Identities=6% Similarity=-0.013 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC----CCC----HHHHHH
Q 003439 552 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PV----RPD----ASIWGA 622 (820)
Q Consensus 552 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~----~p~----~~~~~~ 622 (820)
+..+...+...|++++|..+|+..... .+.+...+..+...|.+.|++++|.+.++++ .. .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 334444444555555555555544432 1123344445555555555555555555443 11 122 456677
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhh
Q 003439 623 LLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 662 (820)
Q Consensus 623 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 662 (820)
+...+...|++++|...++++++..| ++.....+..++.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 77777788888888888888887777 4555555554443
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=9.3e-05 Score=80.59 Aligned_cols=163 Identities=6% Similarity=-0.137 Sum_probs=100.9
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcC-CCCChh----HHHHHHHHHHhcCCHHHHHHHHHHhHHhh---CCCCC-hhH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEG-VRPDHI----TFVSLLTACSHSGLVSEGQRYFHMMQEEF---GIKPH-LKH 587 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---g~~p~-~~~ 587 (820)
+..+...|...|++++|.+.+.++...- -.++.. ..+.+-..+...|+.+++.+++....... +..+. ...
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3445666777777777777776665421 111211 12222223345677777777777654321 22222 346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC---C----cc
Q 003439 588 YGCMVDLFGRAGHLGMAHNFIQNM-----P--VRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSE---N----VG 652 (820)
Q Consensus 588 ~~~li~~~~~~g~~~eA~~~~~~m-----~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~----~~ 652 (820)
+..|...|...|++++|.+++++. . .+|. ..++..++..|...|+++.|...+++++.+.+. + ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 677788888888888888887755 1 1222 337777888888888888888888887764322 1 23
Q ss_pred hHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 653 YYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 653 ~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
.+..++.++...|++++|...+....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455677888888888888877766643
No 180
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.85 E-value=0.0003 Score=79.07 Aligned_cols=169 Identities=10% Similarity=-0.001 Sum_probs=136.6
Q ss_pred CCHHHHHHHHhhCC---CCCccccchHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhc
Q 003439 497 GRIDDAMSLFYQVP---RSSSVPWNAIISCHGIHGQ----------GDKALNFFRQMLDEGVRPD-HITFVSLLTACSHS 562 (820)
Q Consensus 497 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~ 562 (820)
..-++|.+.++++. +.+...|+.--..+...|+ ++++++.++++.+. .|. ..+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 34466788777766 4455567777666666666 89999999999994 564 45888888888889
Q ss_pred C--CHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-------
Q 003439 563 G--LVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAG-HLGMAHNFIQNM-PVRP-DASIWGALLGACRIH------- 630 (820)
Q Consensus 563 g--~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g-~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~------- 630 (820)
| +++++++.++.+.+. -.-+...|+.-..++.+.| ..+++.+.++++ ...| |...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 9 789999999999864 2235677888888888999 899999999988 4555 577999988887763
Q ss_pred -------CChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcch
Q 003439 631 -------GNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEG 669 (820)
Q Consensus 631 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 669 (820)
+.++++.+.+++++.++|++..+|..+.+++.+.|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999998666
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.85 E-value=0.00015 Score=63.42 Aligned_cols=101 Identities=10% Similarity=-0.001 Sum_probs=62.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKPHL----KHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPD----ASIWGALLG 625 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~ 625 (820)
+...+...|++++|.+.|+.+.+. .|+. ..+..+...|.+.|++++|.+.+++. ...|+ ..++..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 344455556666666666555543 1221 24555566666666666666666554 22232 446677777
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCcchHHhHH
Q 003439 626 ACRIHGNMELGAVASDRLFEVDSENVGYYVLMS 658 (820)
Q Consensus 626 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 658 (820)
.+...|++++|+..++++++..|+++.......
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 888888888888888888888887665544433
No 182
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.83 E-value=5e-05 Score=66.10 Aligned_cols=97 Identities=10% Similarity=0.041 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003439 552 FVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACR 628 (820)
Q Consensus 552 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 628 (820)
+..+...+...|++++|...|+...+. .| +...+..+..++.+.|++++|+..+++. ...| +...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555666667777777777666643 33 4556666677777777777777777665 3344 4557888888888
Q ss_pred hcCChhHHHHHHHHHhccCCCCc
Q 003439 629 IHGNMELGAVASDRLFEVDSENV 651 (820)
Q Consensus 629 ~~g~~~~a~~~~~~~~~~~p~~~ 651 (820)
..|++++|+..++++++++|++.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888888888654
No 183
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.82 E-value=0.0022 Score=66.16 Aligned_cols=229 Identities=11% Similarity=0.078 Sum_probs=156.0
Q ss_pred HHHHcCChHHHHHHHHhhhhcCCCCCCcccH-hhHHHHhhccC-ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C
Q 003439 421 GYAQNGLASEAIEVFQMMEECNEINPNQGTY-VSILPAYSHVG-ALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKC-G 497 (820)
Q Consensus 421 ~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~-~~ll~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~-g 497 (820)
.....+..++|+++++++.. +.|+..|. +.--..+...+ .++++.++++.+++...+ +..+++.-...+.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~---~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVR---MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC
T ss_pred HHHhCCCCHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcC
Confidence 33445566788888888877 77766553 33333444556 588888888888876533 556666666666665 6
Q ss_pred -CHHHHHHHHhhCCCC---CccccchHHHHHHhcCChH--------HHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCC
Q 003439 498 -RIDDAMSLFYQVPRS---SSVPWNAIISCHGIHGQGD--------KALNFFRQMLDEGVRP-DHITFVSLLTACSHSGL 564 (820)
Q Consensus 498 -~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 564 (820)
++++++++++++... |...|+--.-.+.+.|..+ ++++.++++++. .| |...|+.....+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTT
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccc
Confidence 788999999888744 4455665555555555555 899999999995 45 55678777777777775
Q ss_pred -------HHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCH--------------------HHHHHHHHhCC-C--
Q 003439 565 -------VSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHL--------------------GMAHNFIQNMP-V-- 613 (820)
Q Consensus 565 -------~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~--------------------~eA~~~~~~m~-~-- 613 (820)
+++++++++.+... .| |...|+.+-.++.+.|+- .+..++..++. .
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPL 293 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CC
T ss_pred cccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccc
Confidence 78888888887743 45 566787777778777753 44445554441 1
Q ss_pred -----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHh-ccCCCCcchHHhHH
Q 003439 614 -----RPDASIWGALLGACRIHGNMELGAVASDRLF-EVDSENVGYYVLMS 658 (820)
Q Consensus 614 -----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~ 658 (820)
.+....+..|+..|...|+.++|.++++.+. +.+|-...++...+
T Consensus 294 ~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 294 PEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp CSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 2567788999999999999999999999986 78886665555433
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.78 E-value=7.9e-05 Score=79.12 Aligned_cols=112 Identities=7% Similarity=-0.061 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 003439 550 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP-DASIWGALLGACR 628 (820)
Q Consensus 550 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~ 628 (820)
..+..+...+.+.|++++|.+.|+...+.. |+. ...-..+++. ...| +..+|..+..+|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888888776421 000 0000000000 0112 2335555555566
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 629 IHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 629 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+.|++++|+..++++++++|+++.++..++.+|...|++++|...++++.+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 6666666666666666666666666666666666666666666666555543
No 185
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.78 E-value=0.00016 Score=63.39 Aligned_cols=58 Identities=7% Similarity=0.024 Sum_probs=33.2
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003439 517 WNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQ 576 (820)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 576 (820)
|..+...+.+.|++++|++.|++.++ +.|+ ...|..+..+|...|++++|++.++...
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 33445555566666666666666665 3443 3355555666666666666666665554
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.77 E-value=5.9e-05 Score=80.13 Aligned_cols=136 Identities=7% Similarity=-0.011 Sum_probs=104.7
Q ss_pred cccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHH
Q 003439 515 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVD 593 (820)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~ 593 (820)
..|..+...+.+.|++++|++.|++.++. .|+.. .....+++. ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGA----------KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHH----------HHHHHHHHHHHHHHH
Confidence 34788888999999999999999998872 11110 011111111 1122 3457788888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHH
Q 003439 594 LFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVD 671 (820)
Q Consensus 594 ~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 671 (820)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 5556 46689999999999999999999999999999999999999999998888877765
Q ss_pred H
Q 003439 672 E 672 (820)
Q Consensus 672 ~ 672 (820)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.76 E-value=2.8e-05 Score=81.64 Aligned_cols=146 Identities=5% Similarity=-0.116 Sum_probs=82.7
Q ss_pred cccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 003439 515 VPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDL 594 (820)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 594 (820)
..|..+...+.+.|++++|+..|++.+. +.|+... +...|+.+++...+ . ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHH
Confidence 3366777778888889999999988887 4565442 22334444443322 1 1367788889
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHh-hhcCCcchHH
Q 003439 595 FGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIY-ANVGKWEGVD 671 (820)
Q Consensus 595 ~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y-~~~g~~~~A~ 671 (820)
|.+.|++++|++.+++. ...| +...|..+..+|...|++++|+..++++++++|++...+..|..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876 3445 5668999999999999999999999999999999999988888874 4556677788
Q ss_pred HHHHHHHhC
Q 003439 672 EVRSLARDR 680 (820)
Q Consensus 672 ~~~~~m~~~ 680 (820)
..++.|.+.
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 888877654
No 188
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.76 E-value=0.0014 Score=67.43 Aligned_cols=215 Identities=10% Similarity=0.047 Sum_probs=150.2
Q ss_pred cCCh-hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC----------HHHHHHHHhhCC---CCCccccchHHHHHHh
Q 003439 461 VGAL-RQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGR----------IDDAMSLFYQVP---RSSSVPWNAIISCHGI 526 (820)
Q Consensus 461 ~~~~-~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 526 (820)
.|.+ ++|.++.+.++..... +..+++.--..+...|. ++++..+++.+. +++...|+--.-.+..
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 42 AGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 3444 3678888888775432 33344433333332222 678888888776 5677778887777777
Q ss_pred cC--ChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCC-HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHc----
Q 003439 527 HG--QGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGL-VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRA---- 598 (820)
Q Consensus 527 ~g--~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~---- 598 (820)
.| .+++++++++++.+. .| |...|+.-..++...|. +++++++++.+.+. -.-|...|+....++.+.
T Consensus 121 l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 121 LPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC
T ss_pred cCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcc
Confidence 77 489999999999995 45 55677777777778887 69999999999864 233566777777776665
Q ss_pred ----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChhHHHHHHHHHhccCCCCcchHH
Q 003439 599 ----------GHLGMAHNFIQNM-PVRP-DASIWGALLGACRIH-----------GNMELGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 599 ----------g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~ 655 (820)
+.++++++.+++. ...| |..+|+-+-..+... +.++++++.++++++++|++.-.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 5688999998876 3344 677998777666655 4578999999999999998855544
Q ss_pred hHHHHh---hhcCCcchHHHHHHHHHhC
Q 003439 656 LMSNIY---ANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 656 ~l~~~y---~~~g~~~~A~~~~~~m~~~ 680 (820)
.++.+. ...|..+++...+.++.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 443322 2456667777888877754
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.75 E-value=0.00011 Score=66.89 Aligned_cols=131 Identities=14% Similarity=0.063 Sum_probs=79.3
Q ss_pred chHHHHHHhcCChHHHHHHHHHHHHcCCC-CCh----hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC----hhHH
Q 003439 518 NAIISCHGIHGQGDKALNFFRQMLDEGVR-PDH----ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKHY 588 (820)
Q Consensus 518 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~ 588 (820)
..+...|...|++++|+..+++..+.... ++. .++..+...+...|++++|.++++...+...-.++ ...+
T Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 92 (164)
T 3ro3_A 13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 92 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 34444555555555555555555442100 111 25566666777777777777777766543211111 3456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 003439 589 GCMVDLFGRAGHLGMAHNFIQNM-------PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDS 648 (820)
Q Consensus 589 ~~li~~~~~~g~~~eA~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 648 (820)
..+...+...|++++|.+.+++. +..+. ..++..+...+...|++++|...+++++++..
T Consensus 93 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 93 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 66777777888888887777654 11111 33667777888888999999999988876543
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.74 E-value=5.5e-05 Score=79.37 Aligned_cols=149 Identities=10% Similarity=0.007 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003439 483 VFVATCLVDMYGKCGRIDDAMSLFYQVPR--SSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACS 560 (820)
Q Consensus 483 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 560 (820)
...+..+...|.+.|++++|...|++... ++.. .+...|+..++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 34567788889999999999999987652 2211 1223344444433221 136777888899
Q ss_pred hcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHH-HHhcCChhHH
Q 003439 561 HSGLVSEGQRYFHMMQEEFGIKP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDAS-IWGALLGA-CRIHGNMELG 636 (820)
Q Consensus 561 ~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~-~~~~g~~~~a 636 (820)
+.|++++|+..++...+. .| +...|..+..+|...|++++|.+.|++. .+.|+.. ++..|... ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988753 44 5678888999999999999999999987 5566543 56655555 3455677888
Q ss_pred HHHHHHHhccCCCCc
Q 003439 637 AVASDRLFEVDSENV 651 (820)
Q Consensus 637 ~~~~~~~~~~~p~~~ 651 (820)
...++++++..|+++
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 999999999998765
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00023 Score=77.48 Aligned_cols=156 Identities=11% Similarity=-0.023 Sum_probs=114.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCh----------------hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh--
Q 003439 524 HGIHGQGDKALNFFRQMLDEGVRPDH----------------ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL-- 585 (820)
Q Consensus 524 ~~~~g~~~~A~~l~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~-- 585 (820)
+.+.|++++|++.|.++++....... ..+..+...|...|++++|.+++..+....+-.++.
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 45667888888888887774211110 136778899999999999999999887654433333
Q ss_pred --hHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc------CCC
Q 003439 586 --KHYGCMVDLFGRAGHLGMAHNFIQNM-------PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEV------DSE 649 (820)
Q Consensus 586 --~~~~~li~~~~~~g~~~eA~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~p~ 649 (820)
.+.+.+...+...|+.++|.+++++. ...+. ..++..|...+...|++++|...++++... .|.
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 23344445555678999999888765 22333 447888999999999999999999988753 222
Q ss_pred CcchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 650 NVGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 650 ~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
....+..++.+|...|++++|..++++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 345788899999999999999999988764
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.73 E-value=6.3e-05 Score=63.81 Aligned_cols=92 Identities=9% Similarity=-0.040 Sum_probs=75.1
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------cchHH
Q 003439 584 HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSEN------VGYYV 655 (820)
Q Consensus 584 ~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 655 (820)
+...+..+...+.+.|++++|.+.+++. ...| +..+|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3456677778888888888888888776 3344 56789999999999999999999999999999988 77788
Q ss_pred hHHHHhhhcCCcchHHHHHH
Q 003439 656 LMSNIYANVGKWEGVDEVRS 675 (820)
Q Consensus 656 ~l~~~y~~~g~~~~A~~~~~ 675 (820)
.++.++...|++++|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888988888887765443
No 193
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.73 E-value=4.7e-05 Score=70.16 Aligned_cols=77 Identities=10% Similarity=-0.024 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc-chHHhHHHHh
Q 003439 585 LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENV-GYYVLMSNIY 661 (820)
Q Consensus 585 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~y 661 (820)
...|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++ .....|..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 357788888899999999999888876 3445 466899999999999999999999999999999887 4454554443
No 194
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.72 E-value=4.7e-05 Score=65.72 Aligned_cols=93 Identities=15% Similarity=0.125 Sum_probs=56.4
Q ss_pred cCCHHHHHHHHHHhHHhhCC-CC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 003439 562 SGLVSEGQRYFHMMQEEFGI-KP-HLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGA 637 (820)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~g~-~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 637 (820)
.|++++|+..|+...+. +. .| +...+..+..+|.+.|++++|.+.+++. ...| +..+|..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 34555555555555421 10 12 2345556666666666666666666655 2233 3557777888888888888888
Q ss_pred HHHHHHhccCCCCcchHH
Q 003439 638 VASDRLFEVDSENVGYYV 655 (820)
Q Consensus 638 ~~~~~~~~~~p~~~~~~~ 655 (820)
..++++++..|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 888888888887765443
No 195
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.70 E-value=8.1e-05 Score=81.71 Aligned_cols=64 Identities=9% Similarity=-0.041 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 617 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 617 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..+|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...++++.+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4688899999999999999999999999999999999999999999999999999999998875
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.62 E-value=0.00012 Score=61.06 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 616 DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 616 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+...|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56689999999999999999999999999999999999999999999999999999999988754
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.58 E-value=0.00019 Score=58.10 Aligned_cols=81 Identities=17% Similarity=0.244 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhh
Q 003439 585 LKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYA 662 (820)
Q Consensus 585 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 662 (820)
...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345666677777778888888777765 2233 56688888889999999999999999999999999988888888887
Q ss_pred hcC
Q 003439 663 NVG 665 (820)
Q Consensus 663 ~~g 665 (820)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.53 E-value=7.7e-05 Score=64.02 Aligned_cols=78 Identities=8% Similarity=0.038 Sum_probs=65.2
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 603 MAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 603 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+|.+.+++. ...| +...|..+...+...|++++|+..++++++++|++...+..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555554 3344 56688899999999999999999999999999999999999999999999999999999888754
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.51 E-value=3.1e-05 Score=69.62 Aligned_cols=85 Identities=13% Similarity=0.078 Sum_probs=66.8
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHhccCCCCcchHHhHHHHhhhc
Q 003439 597 RAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGN----------MELGAVASDRLFEVDSENVGYYVLMSNIYANV 664 (820)
Q Consensus 597 ~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 664 (820)
|.+.+++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 455666666666655 3344 45567667776666655 46999999999999999999999999999987
Q ss_pred C-----------CcchHHHHHHHHHhCC
Q 003439 665 G-----------KWEGVDEVRSLARDRG 681 (820)
Q Consensus 665 g-----------~~~~A~~~~~~m~~~~ 681 (820)
| ++++|.+.|+++.+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999998763
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.44 E-value=0.00015 Score=79.47 Aligned_cols=115 Identities=10% Similarity=-0.029 Sum_probs=87.9
Q ss_pred HHHHcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhc-----cCCCCcc---hHH
Q 003439 594 LFGRAGHLGMAHNFIQNM---------PVRPDAS-IWGALLGACRIHGNMELGAVASDRLFE-----VDSENVG---YYV 655 (820)
Q Consensus 594 ~~~~~g~~~eA~~~~~~m---------~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~ 655 (820)
.+...|++++|+.++++. +..|+.. +++.|..+|...|++++|+.+++++++ +.|+++. .+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988765 2334444 899999999999999999999999886 4565544 566
Q ss_pred hHHHHhhhcCCcchHHHHHHHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHHh
Q 003439 656 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKS 726 (820)
Q Consensus 656 ~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 726 (820)
.|+.+|..+|++++|..+++++.+.-. ..-...||...++...+.+...++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILL------------------VTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH------------------HHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998875311 01124599998888777776655543
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.38 E-value=0.0002 Score=77.35 Aligned_cols=114 Identities=15% Similarity=0.097 Sum_probs=82.2
Q ss_pred HHHHcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhc-----cCCCCcc---hHH
Q 003439 594 LFGRAGHLGMAHNFIQNM---------PVRPDA-SIWGALLGACRIHGNMELGAVASDRLFE-----VDSENVG---YYV 655 (820)
Q Consensus 594 ~~~~~g~~~eA~~~~~~m---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~ 655 (820)
-+.+.|++++|++++++. +..|+. .+++.|..+|...|++++|+.+++++++ +.|+++. .+.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344566777777766544 112333 3788888888889999999998888876 3455444 566
Q ss_pred hHHHHhhhcCCcchHHHHHHHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHH
Q 003439 656 LMSNIYANVGKWEGVDEVRSLARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMK 725 (820)
Q Consensus 656 ~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 725 (820)
.|+.+|..+|++++|..+++++.+--. ..-...||...+++..+.+...+|+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 889999999999999999988875311 0112459999999999988888776
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.27 E-value=0.00075 Score=55.10 Aligned_cols=69 Identities=10% Similarity=-0.024 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCC
Q 003439 614 RPDASIWGALLGACRIHGN---MELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 614 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 682 (820)
.+|...|..+..++...++ .++|...++++++++|+++.....++.++...|++++|...++++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3567788888888865555 69999999999999999999999999999999999999999999987743
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0011 Score=55.90 Aligned_cols=65 Identities=9% Similarity=-0.022 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 616 DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 616 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45678889999999999999999999999999999999999999999999999999999998865
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.19 E-value=0.0014 Score=58.32 Aligned_cols=64 Identities=8% Similarity=-0.082 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCcchHHhHHHHhhh----cCCcchHHHHHHHHHhCC
Q 003439 616 DASIWGALLGACRI----HGNMELGAVASDRLFEVDSENVGYYVLMSNIYAN----VGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 616 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~~~ 681 (820)
+...+..|...|.. .+|.++|...++++.+. .++..+..|+.+|.. .+++++|.+.+++..+.|
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 33344444444444 44555555555555443 345555556666665 566666666666655554
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.17 E-value=0.00025 Score=63.73 Aligned_cols=102 Identities=8% Similarity=-0.063 Sum_probs=63.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHH
Q 003439 524 HGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLG 602 (820)
Q Consensus 524 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 602 (820)
..+.+++++|++.+++..+ ..|+ ...|..+..++...++++.+....+ .++
T Consensus 12 ~~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~--------------------------~~~ 63 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQ--------------------------MIQ 63 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHH--------------------------HHH
T ss_pred HHHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHh--------------------------HHH
Confidence 3455667777777777777 3453 4466666666666665442222110 134
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhc-----------CChhHHHHHHHHHhccCCCCcch
Q 003439 603 MAHNFIQNM-PVRPD-ASIWGALLGACRIH-----------GNMELGAVASDRLFEVDSENVGY 653 (820)
Q Consensus 603 eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~ 653 (820)
+|+..|++. .+.|+ ..+|..+..+|... |++++|+..|+++++++|++..+
T Consensus 64 eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 64 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 555555554 34443 34666666666655 58999999999999999987543
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.16 E-value=0.0014 Score=52.75 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 617 ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 617 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
...|..+...+...|++++|+..+++++++.|+++..+..++.+|...|++++|...+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4578888999999999999999999999999999999999999999999999999999998765
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.14 E-value=0.0034 Score=70.40 Aligned_cols=150 Identities=11% Similarity=0.022 Sum_probs=122.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCC----------HHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 003439 527 HGQGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSHSGL----------VSEGQRYFHMMQEEFGIKPHLKHYGCMVDLF 595 (820)
Q Consensus 527 ~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 595 (820)
....++|++.++++++ +.|+.. .|+.--.++.+.|+ ++++.+.++.+.+. -+-+...|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3445789999999999 578765 56666666667777 99999999999864 233566788888888
Q ss_pred HHcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHhccCCCCcchHHhHHHHhhhc------
Q 003439 596 GRAG--HLGMAHNFIQNM-PVRP-DASIWGALLGACRIHG-NMELGAVASDRLFEVDSENVGYYVLMSNIYANV------ 664 (820)
Q Consensus 596 ~~~g--~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~------ 664 (820)
.+.| ++++++++++++ ...| +..+|+.-..+....| ..+++.+.++++++.+|.|..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8999 779999999998 3344 6779999999999999 899999999999999999999999998888774
Q ss_pred --------CCcchHHHHHHHHHhC
Q 003439 665 --------GKWEGVDEVRSLARDR 680 (820)
Q Consensus 665 --------g~~~~A~~~~~~m~~~ 680 (820)
++++++.+.++++...
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhh
Confidence 4567888888777654
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.14 E-value=0.00024 Score=76.53 Aligned_cols=81 Identities=6% Similarity=0.034 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhc-----cCCCCcc---hHHhHHHH
Q 003439 599 GHLGMAHNFIQNM---------PVRPDAS-IWGALLGACRIHGNMELGAVASDRLFE-----VDSENVG---YYVLMSNI 660 (820)
Q Consensus 599 g~~~eA~~~~~~m---------~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~ 660 (820)
|++++|+.++++. +..|+.. +++.|..+|...|++++|+.+++++++ +.|+++. .+..|+.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555443 2234433 778888888888888888888888775 3454443 56678889
Q ss_pred hhhcCCcchHHHHHHHHHh
Q 003439 661 YANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 661 y~~~g~~~~A~~~~~~m~~ 679 (820)
|..+|++++|..+++++.+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999999888765
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.01 E-value=0.0059 Score=62.94 Aligned_cols=138 Identities=9% Similarity=-0.038 Sum_probs=65.7
Q ss_pred CCCCccccchHHHHHHh--cC---ChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHh---cC--CHHHHH---HHHHHh
Q 003439 510 PRSSSVPWNAIISCHGI--HG---QGDKALNFFRQMLDEGVRPDHI-TFVSLLTACSH---SG--LVSEGQ---RYFHMM 575 (820)
Q Consensus 510 ~~~~~~~~~~li~~~~~--~g---~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~---~g--~~~~a~---~~~~~m 575 (820)
...+...|...+.+... .+ +..+|+.+|++.++ ..|+.. .+..+.-++.. .+ .-.... +.+...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 34567777777766432 23 34789999999999 578753 55544444431 00 000000 011100
Q ss_pred HHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 576 QEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 576 ~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
........+...|..+.-.+...|++++|...++++ ..+|+...|..+...+...|+.++|.+.+++++.++|.
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 000011223344444444444445555555555544 23344444444444455555555555555555555553
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.96 E-value=0.0026 Score=56.52 Aligned_cols=113 Identities=11% Similarity=-0.037 Sum_probs=90.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHH----cCCHH
Q 003439 527 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGR----AGHLG 602 (820)
Q Consensus 527 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~ 602 (820)
.+++++|++.|++..+.| .|+.. |...|...+.+++|.++|+...+. -+...+..|..+|.. .++.+
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 356789999999999887 34333 666777778889999999888754 356778888888888 78999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCC
Q 003439 603 MAHNFIQNMPVRPDASIWGALLGACRI----HGNMELGAVASDRLFEVDS 648 (820)
Q Consensus 603 eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 648 (820)
+|.+.|++.-...+...+..|...|.. .+|.++|...++++.+...
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999987434577788888888888 8899999999999988743
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.88 E-value=0.004 Score=66.95 Aligned_cols=92 Identities=13% Similarity=0.008 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHhHHhhC--CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHH
Q 003439 563 GLVSEGQRYFHMMQEEFG--IKPH----LKHYGCMVDLFGRAGHLGMAHNFIQNM---------PVRPDAS-IWGALLGA 626 (820)
Q Consensus 563 g~~~~a~~~~~~m~~~~g--~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m---------~~~p~~~-~~~~ll~~ 626 (820)
|++++|..++++..+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+.. +++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 455555555555443211 1111 245556666666666666666665544 2345554 78888888
Q ss_pred HHhcCChhHHHHHHHHHhc-----cCCCCcchH
Q 003439 627 CRIHGNMELGAVASDRLFE-----VDSENVGYY 654 (820)
Q Consensus 627 ~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 654 (820)
|...|++++|+.+++++++ +.|+++.+-
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999988876 457666543
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.75 E-value=0.046 Score=64.48 Aligned_cols=115 Identities=16% Similarity=0.088 Sum_probs=80.2
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHH
Q 003439 389 DMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGI 468 (820)
Q Consensus 389 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 468 (820)
.....+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHH
Confidence 34567889999999987764 467899999999999999999999998865 344555555567766666
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHH
Q 003439 469 KIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQ 539 (820)
Q Consensus 469 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 539 (820)
++-+.+...|. ++.-..+|.++|++++|.+++ .+.+++++|..+-+.
T Consensus 728 ~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 728 TLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHHHHHH
Confidence 55555555442 233445566777777777766 344666777665554
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.75 E-value=0.0029 Score=52.08 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=32.2
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchH
Q 003439 592 VDLFGRAGHLGMAHNFIQNM-PVRP-DAS-IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 654 (820)
Q Consensus 592 i~~~~~~g~~~eA~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 654 (820)
...+.+.|++++|.+.+++. ...| +.. .|..+...+...|++++|+..++++++++|++...+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34445555555555555544 2222 334 455555555555555555555555555555554443
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.72 E-value=0.0059 Score=54.15 Aligned_cols=91 Identities=14% Similarity=0.062 Sum_probs=64.8
Q ss_pred CCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhccC-C-CCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCCCcCCce
Q 003439 614 RPDASIWGALLGACRIHG---NMELGAVASDRLFEVD-S-ENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLKKTPGW 688 (820)
Q Consensus 614 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~ 688 (820)
.++..+.-.+.+++.+.+ +.++|+.+++.+++.+ | ++...+..|+-.|.+.|++++|.++++.+.+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i-------- 100 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-------- 100 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------
Confidence 356677777777888777 5668888888888877 6 45667777888888888888888888888765
Q ss_pred eEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHHhCCCc
Q 003439 689 SSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYV 730 (820)
Q Consensus 689 s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 730 (820)
.|...+.......+.+.+.+.|.+
T Consensus 101 ------------------eP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 101 ------------------EPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred ------------------CCCCHHHHHHHHHHHHHHHHhhHH
Confidence 344445555555566667666654
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.71 E-value=0.0079 Score=64.73 Aligned_cols=98 Identities=12% Similarity=-0.048 Sum_probs=61.1
Q ss_pred HHhcCCHHHHHHHHHHhHHhhC--CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCHH-HHHH
Q 003439 559 CSHSGLVSEGQRYFHMMQEEFG--IKPH----LKHYGCMVDLFGRAGHLGMAHNFIQNM---------PVRPDAS-IWGA 622 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~g--~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m---------~~~p~~~-~~~~ 622 (820)
+.+.|++++|.++++...+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+.. +++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 4445566666666655543211 1111 245566666666666666666666544 2345544 7888
Q ss_pred HHHHHHhcCChhHHHHHHHHHhc-----cCCCCcchHHh
Q 003439 623 LLGACRIHGNMELGAVASDRLFE-----VDSENVGYYVL 656 (820)
Q Consensus 623 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~ 656 (820)
|...|...|++++|+.+++++++ +.|+++.+-..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88889999999999999988876 56777655443
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.57 E-value=0.0055 Score=50.65 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=40.7
Q ss_pred CccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003439 513 SSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQE 577 (820)
Q Consensus 513 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 577 (820)
+...|..+...|...|++++|++.|++.++. .|+ ...|..+..++...|++++|.+.|+...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444666666666777777777777777663 443 34666666677777777777777766553
No 217
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.56 E-value=0.0029 Score=53.83 Aligned_cols=59 Identities=19% Similarity=0.098 Sum_probs=27.5
Q ss_pred ccchHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 003439 516 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPD-HITFVSLLTACSHSGLVSEGQRYFHMMQ 576 (820)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 576 (820)
.|..+...|...|++++|+..|++.++. .|+ ...+..+..++...|++++|...|+...
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444455555555554442 232 2344444445555555555555554443
No 218
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.53 E-value=0.0084 Score=62.96 Aligned_cols=393 Identities=8% Similarity=0.037 Sum_probs=224.9
Q ss_pred CChhhhHHHHHHHHccCChHHHHHHhcccCCCCcchHHHHHHHHHhCCCchHHHHHHHHHhhhCCCCCCccccHHHHHhh
Q 003439 77 KTVFSSTKLVNFYANLGDLSFSRHTFDHISYRNVYTWNSMISVYVRCGRLSEAVDCFYQFTLTSGLRPDFYTFPPVLKAC 156 (820)
Q Consensus 77 ~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~~ 156 (820)
-.+-+|+.|-.++.+.|.+.+|...|=+. .|...|..+|.+..+.|.+++-+..+. |.+.. .-+...=+.|+-++
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~--MaRk~-~ke~~IDteLi~ay 126 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQ--MARKK-ARESYVETELIFAL 126 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHH--TTSTT-CCSTTTTHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHH--HHHHH-hcccccHHHHHHHH
Confidence 34557888888888888888888776443 455567888888889999988888665 54433 23334445677677
Q ss_pred cCCcchHHHHHHHHHhCCCCcHHHHHHHHHHhhcCCChhHHHHHhccCC------------------------CCCcccH
Q 003439 157 RNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRFGLANVARKLFDDMP------------------------VRDSGSW 212 (820)
Q Consensus 157 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~------------------------~~~~~~~ 212 (820)
++.+.-.++-+.+ -.|++.-...+-+-+-..|.++.|.-+|..+. ..++.+|
T Consensus 127 Ak~~rL~elEefl----~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 127 AKTNRLAELEEFI----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp HTSCSSSTTTSTT----SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred HhhCcHHHHHHHH----cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 6655411100000 12444444444555555566666666665553 1367789
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHc
Q 003439 213 NAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLE-FNLFVSNNLINMYAK 291 (820)
Q Consensus 213 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~ 291 (820)
-.+-.+|...+.+.-|.-.--... + .+.-+..++.-|-..|.+++-..+++..+ |++ ...-+++-|.-.|+|
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniI---v--hadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIV---V--HADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHH---C--CSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHhCchHHHHHHHhcchhc---c--cHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHh
Confidence 999999999998887655443333 1 22234456777888888888777776655 332 356678888888887
Q ss_pred cCCHHHHHHHHhc----cCCC-------CchHHHHHHHHHHhCCChhhHHHH-------------HHHHHHcCCCCCcch
Q 003439 292 FGMMRHALRVFDQ----MMER-------DVVSWNSIIAAYEQSNDPITAHGF-------------FTTMQQAGIQPDLLT 347 (820)
Q Consensus 292 ~g~~~~A~~~f~~----m~~~-------d~~~~~~li~~~~~~g~~~~A~~~-------------~~~m~~~g~~pd~~t 347 (820)
-. .++-.+-++. +--| ....|.-++-.|.+..+++.|... |++...+ .+|...
T Consensus 276 Y~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~Ei 352 (624)
T 3lvg_A 276 FK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVEL 352 (624)
T ss_dssp SC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHH
T ss_pred cC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHH
Confidence 63 3333333222 2112 344688888888888887766532 1111110 122222
Q ss_pred H---------------HHHHHHHHh-------------cCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHH
Q 003439 348 L---------------VSLTSIVAQ-------------LNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINS 399 (820)
Q Consensus 348 ~---------------~~ll~a~~~-------------~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~ 399 (820)
| +-+|.++.. .+++...+..+..+. -..+..+-.++-+.|....+++.
T Consensus 353 yYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq----~~N~~aVNeAln~L~IEEEDy~~ 428 (624)
T 3lvg_A 353 YYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQ----NHNNKSVNESLNNLFITEEDYQA 428 (624)
T ss_dssp HHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCC----CSCCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHH----HhhHHHHHHHHHHHHhhhhhHHH
Confidence 2 233333332 222222222222111 12244566677788888888776
Q ss_pred HHHHHhcCCCCCchH------------HH-HHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhH
Q 003439 400 ACAVFEGLPVKDVIS------------WN-TLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ 466 (820)
Q Consensus 400 A~~~f~~~~~~~~~~------------~~-~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~ 466 (820)
-+...+.-..=|.+. +. .-...|.+++++++++++.++ ...|.-.|...+..++.+.
T Consensus 429 LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk----------DklykDAietAa~S~~~el 498 (624)
T 3lvg_A 429 LRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK----------DSLYKDAMQYASESKDTEL 498 (624)
T ss_dssp HHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST----------TCCTTGGGTTTTTCCCTTH
T ss_pred HHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh----------cccHHHHHHHHHHcCCHHH
Confidence 665554433223222 22 122345667777777655432 2234455667788999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 003439 467 GIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSL 505 (820)
Q Consensus 467 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 505 (820)
+.++++..++.|- ...+.+.+-.+...=+++.++++
T Consensus 499 aeeLL~yFv~~g~---~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 499 AEELLQWFLQEEK---RECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHHHHHHHCS---THHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHHHHHcCc---hHHHHHHHHHHhhccChHHHHHH
Confidence 9999999988773 33444444444444455555554
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.47 E-value=0.009 Score=48.97 Aligned_cols=86 Identities=13% Similarity=0.094 Sum_probs=62.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCC-Chh-HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhc
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKP-HLK-HYGCMVDLFGRAGHLGMAHNFIQNM-PVRPDAS-IWGALLGACRIH 630 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p-~~~-~~~~li~~~~~~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~ 630 (820)
....+...|++++|.+.++...+. .| +.. .+..+..+|.+.|++++|.+.|++. ...|+.. +|..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 456778889999999999888754 44 446 7888888999999999999998876 3444432 3311
Q ss_pred CChhHHHHHHHHHhccCCCCc
Q 003439 631 GNMELGAVASDRLFEVDSENV 651 (820)
Q Consensus 631 g~~~~a~~~~~~~~~~~p~~~ 651 (820)
+.++++...+++....+|+++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 556777788887777777654
No 220
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.24 E-value=0.002 Score=67.47 Aligned_cols=397 Identities=11% Similarity=0.053 Sum_probs=229.2
Q ss_pred CcHHHHHHHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhh
Q 003439 176 WDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCA 255 (820)
Q Consensus 176 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 255 (820)
..+.+|+.|-.++.+.|++.+|+.-| +...|...|..+|.+..+.|.+++-+..+...++..-.| ..=+.++-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHH
Confidence 34678888999999999999988877 445677889999999999999999998887666553333 34457788888
Q ss_pred cCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCC------------------------CCch
Q 003439 256 RSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMME------------------------RDVV 311 (820)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~------------------------~d~~ 311 (820)
+.+++.+-++++. .||..-.....+-+...|.++.|.-+|..+.. .++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 8887765443321 35555556667777788888888888876632 3667
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHH
Q 003439 312 SWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMY 391 (820)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y 391 (820)
||--+-.+|...+.+.-|.-.--.+. +.|| ....++.-|...|.+++-..+++.-... -..-..+++-|.-.|
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglgl--ErAHmGmFTELaILY 273 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILY 273 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS--TTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC--CchhHHHHHHHHHHH
Confidence 88888888888888776654433332 1121 2223445566777777777777665522 244567788888888
Q ss_pred HhcCCHHHHHHHHh----cCCCC-------CchHHHHHHHHHHHcCChHHHHHHHHhhhhc----------CC---CCCC
Q 003439 392 AKLGIINSACAVFE----GLPVK-------DVISWNTLITGYAQNGLASEAIEVFQMMEEC----------NE---INPN 447 (820)
Q Consensus 392 ~~~g~~~~A~~~f~----~~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----------~g---~~pd 447 (820)
+|-. .++-.+.++ ++.-| ....|.-++-.|.+..+++.|... |.+. .. -.+|
T Consensus 274 sKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~Fkdii~KVaN 349 (624)
T 3lvg_A 274 SKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVAN 349 (624)
T ss_dssp HSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGGTTTGGGCSC
T ss_pred HhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHHHHHHHHHcch
Confidence 8762 333333332 22222 456699999999999998877543 2210 00 0111
Q ss_pred cc---------------cHhhHHHHhhccCChhHHHHHHHHHHHh----------CCCCchhHHHHHHHHHHhcCCHHHH
Q 003439 448 QG---------------TYVSILPAYSHVGALRQGIKIHARVIKN----------CLCFDVFVATCLVDMYGKCGRIDDA 502 (820)
Q Consensus 448 ~~---------------t~~~ll~a~~~~~~~~~a~~i~~~~~~~----------g~~~~~~~~~~li~~y~~~g~~~~A 502 (820)
.. -++-+|.++...=+..++.+++...-.. --..+..+-.++-+.|....+++.-
T Consensus 350 ~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~L 429 (624)
T 3lvg_A 350 VELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQAL 429 (624)
T ss_dssp SHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHH
Confidence 11 2334455554444444444444321100 0112344566777777777776655
Q ss_pred HHHHhhCCCCCccc------------cchH-HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 003439 503 MSLFYQVPRSSSVP------------WNAI-ISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 569 (820)
Q Consensus 503 ~~~~~~~~~~~~~~------------~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 569 (820)
+.-.+.-..-|.+. +..+ ...|.+++++.+++++.++ .+ .|.-.+...+.+|+.+-+.
T Consensus 430 R~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dk------lykDAietAa~S~~~elae 500 (624)
T 3lvg_A 430 RTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---DS------LYKDAMQYASESKDTELAE 500 (624)
T ss_dssp HHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---TC------CTTGGGTTTTTCCCTTHHH
T ss_pred HHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---cc------cHHHHHHHHHHcCCHHHHH
Confidence 54433332222221 2221 2245566667666654321 11 1222233345566666666
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 003439 570 RYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNF 607 (820)
Q Consensus 570 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~ 607 (820)
++++-..+. | +.+.|.+.+..+...=+.+.++++
T Consensus 501 eLL~yFv~~-g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 501 ELLQWFLQE-E---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHHHHH-C---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHHHc-C---chHHHHHHHHHHhhccChHHHHHH
Confidence 666655543 2 223333333333333355555555
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.17 E-value=0.01 Score=58.64 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=70.1
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHhccCCCC-cchHHhHHHHhhhc-CCcch
Q 003439 601 LGMAHNFIQNM-PVRPD---ASIWGALLGACRI-----HGNMELGAVASDRLFEVDSEN-VGYYVLMSNIYANV-GKWEG 669 (820)
Q Consensus 601 ~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~-g~~~~ 669 (820)
+.+|..++++. .+.|+ ...|..|...|.+ -|+.+.|++.|++++++.|+. ...++.+++.|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 44556666554 45666 5588888888888 499999999999999999975 99999999999884 99999
Q ss_pred HHHHHHHHHhCCCCcCCc
Q 003439 670 VDEVRSLARDRGLKKTPG 687 (820)
Q Consensus 670 A~~~~~~m~~~~~~~~~~ 687 (820)
|.+.+++......+..|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998876654453
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.14 E-value=0.031 Score=57.61 Aligned_cols=133 Identities=11% Similarity=0.060 Sum_probs=92.5
Q ss_pred CCCChhHHHHHHHHHH--hc---CCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHH----HcC-------CHHHHHHH
Q 003439 545 VRPDHITFVSLLTACS--HS---GLVSEGQRYFHMMQEEFGIKPHL-KHYGCMVDLFG----RAG-------HLGMAHNF 607 (820)
Q Consensus 545 ~~p~~~t~~~ll~a~~--~~---g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~----~~g-------~~~eA~~~ 607 (820)
.+.|...|...+.+.. .. ....+|..+|++..+ +.|+- ..|..+.-+|. ..+ .+.+|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3456667777776643 33 345789999998884 47763 33433332221 111 11223332
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCC
Q 003439 608 IQNMPV-RPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRG 681 (820)
Q Consensus 608 ~~~m~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 681 (820)
...+.. ..+..+|..+...+...|++++|+..++++++++| +...|..++.++.-.|++++|.+.++++...+
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 233322 34677888888878888999999999999999998 57788899999999999999999999988764
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.97 E-value=0.049 Score=64.31 Aligned_cols=101 Identities=19% Similarity=0.125 Sum_probs=61.6
Q ss_pred HHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhH
Q 003439 288 MYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 367 (820)
Q Consensus 288 ~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i 367 (820)
.+..+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+....+
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3556788888888877663 456788888888888888888888888743 33444444445555544444
Q ss_pred HHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhc
Q 003439 368 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEG 406 (820)
Q Consensus 368 ~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 406 (820)
-......| -++.-...|.++|++++|.+++.+
T Consensus 730 ~~~a~~~~-------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 730 AKDAETTG-------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcC-------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444433 113333445555666665555433
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.67 E-value=0.28 Score=41.69 Aligned_cols=138 Identities=11% Similarity=0.047 Sum_probs=88.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 003439 527 HGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHN 606 (820)
Q Consensus 527 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~ 606 (820)
.|..++..++..+..... +..-++-++--....-+-+-..+.++.+-.-+.+ ..+|++.....
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrVi~ 82 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVVE 82 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHHH
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHHHH
Confidence 455666666666655521 2222333333233333334444444443322222 24566666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCCC
Q 003439 607 FIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGLK 683 (820)
Q Consensus 607 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 683 (820)
-+-.+. .+....+.-+.....+|.-+.-.+++..++.-+|.+++..+-++++|.+.|+..+|.++++++-++|++
T Consensus 83 C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 83 CGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666654 234445666778888999999999999876666668999999999999999999999999999999884
No 225
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.29 E-value=3.9 Score=45.69 Aligned_cols=252 Identities=8% Similarity=0.012 Sum_probs=129.1
Q ss_pred cCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHH
Q 003439 377 FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILP 456 (820)
Q Consensus 377 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~ 456 (820)
.+....+.+.-+..+.+.+++......+.. +..+...-.....+....|+..+|......+-. .| .........++.
T Consensus 68 ~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~-~~-~~~p~~c~~l~~ 144 (618)
T 1qsa_A 68 LPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWL-TG-KSQPNACDKLFS 144 (618)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHS-CS-SCCCTHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-CC-CCCcHHHHHHHH
Confidence 333444555666777788888888887776 433444444566777788888888877777665 22 122233444555
Q ss_pred HhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--------------------------
Q 003439 457 AYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVP-------------------------- 510 (820)
Q Consensus 457 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------------------------- 510 (820)
.+.+.|.+... .++.- ++.....|+...|..+...+.
T Consensus 145 ~~~~~g~lt~~----------------~~~~R-~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~ 207 (618)
T 1qsa_A 145 VWRASGKQDPL----------------AYLER-IRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART 207 (618)
T ss_dssp HHHHTTCSCHH----------------HHHHH-HHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHCCCCCHH----------------HHHHH-HHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc
Confidence 55544433221 11111 122222233333333332221
Q ss_pred -CCCccc---cchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH----HHHHHHHhcCCHHHHHHHHHHhHHhhCCC
Q 003439 511 -RSSSVP---WNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFV----SLLTACSHSGLVSEGQRYFHMMQEEFGIK 582 (820)
Q Consensus 511 -~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~----~ll~a~~~~g~~~~a~~~~~~m~~~~g~~ 582 (820)
.++... ...-+.-+. ..+.+.|..+|......+ ..+..... .+.......+...++...+...... .
T Consensus 208 ~~~~~~~~~~~~~~~~rla-r~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~ 282 (618)
T 1qsa_A 208 TGATDFTRQMAAVAFASVA-RQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---S 282 (618)
T ss_dssp SCCCHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---C
T ss_pred cCCChhhHHHHHHHHHHHH-hcCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---C
Confidence 111110 001111222 237788888888776543 22332222 2222233344345566666554322 2
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhH
Q 003439 583 PHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRP-D-ASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLM 657 (820)
Q Consensus 583 p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 657 (820)
++.....-.+..-.+.|+++.|.+.|+.|+..+ + ....-=+..+....|+.++|..+++++.+ + .++|-.|
T Consensus 283 ~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~l 355 (618)
T 1qsa_A 283 QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMV 355 (618)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHH
Confidence 333333334444457789999999998885432 2 22112234466778888889888888865 3 2455544
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.24 E-value=0.049 Score=44.10 Aligned_cols=67 Identities=4% Similarity=-0.038 Sum_probs=51.2
Q ss_pred CChhHHHHHHHHHHHcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003439 583 PHLKHYGCMVDLFGRAGH---LGMAHNFIQNM-PVRPD-ASIWGALLGACRIHGNMELGAVASDRLFEVDSE 649 (820)
Q Consensus 583 p~~~~~~~li~~~~~~g~---~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 649 (820)
++...+..+..++...++ .++|..++++. ...|+ ...+..+...+.+.|++++|+..++++++.+|+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456667777777765544 67888888776 44554 457777888889999999999999999999987
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.95 E-value=0.099 Score=43.30 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhH
Q 003439 616 DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLM 657 (820)
Q Consensus 616 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 657 (820)
...++..|..++.+.|+++.|...++++++++|++..+...+
T Consensus 45 ~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 45 KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 455888899999999999999999999999999887765444
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.55 E-value=0.12 Score=43.96 Aligned_cols=66 Identities=11% Similarity=-0.055 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHhcCChh---HHHHHHHHHhccC-C-CCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 615 PDASIWGALLGACRIHGNME---LGAVASDRLFEVD-S-ENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 615 p~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
|+..+--.+.+++.+..+.. +++.+++.++..+ | ..-.....|+-.+.+.|++++|.+..+.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33444344444444444333 2555555555544 3 22333444555566666666666666555543
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.44 E-value=0.53 Score=42.75 Aligned_cols=129 Identities=15% Similarity=0.158 Sum_probs=79.2
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 003439 491 DMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQR 570 (820)
Q Consensus 491 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 570 (820)
+....+|+++.|.++.+.+ .+...|..|......+|+++-|.+.|++... |..+.-.|...|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445677888887777665 3455688888888888888888887776544 3445555666677666555
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003439 571 YFHMMQEEFGIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNMPVRPDASIWGALLGACRIHGNMELGAVASDRL 643 (820)
Q Consensus 571 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 643 (820)
+-+....+ | -++.-...+.-.|+++++.+++.+.+.-|.... ....+|..+.|.++.+++
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 44333322 1 123334445567888888888877753332221 124467777777776654
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.43 E-value=0.11 Score=45.99 Aligned_cols=37 Identities=11% Similarity=-0.155 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 003439 619 IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 619 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 655 (820)
.+-.|.-+|.+.|++++|++.++++++++|+|..+..
T Consensus 73 ~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 73 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4556777889999999999999999999998765444
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.87 E-value=0.73 Score=39.88 Aligned_cols=67 Identities=4% Similarity=-0.049 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhccCCCC-cchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 614 RPDASIWGALLGACRIHG---NMELGAVASDRLFEVDSEN-VGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 614 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
.|+..+--.+.+++.+.. +..+++.+++.++...|.+ -.....|+-.|.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 344444445555555544 3446777777777666632 334445666677777777777777776654
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.55 E-value=2.1 Score=38.74 Aligned_cols=128 Identities=12% Similarity=0.112 Sum_probs=80.8
Q ss_pred HHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhH
Q 003439 288 MYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSV 367 (820)
Q Consensus 288 ~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i 367 (820)
....+|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.+...|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345678888888887766 4567788888888888888888888887642 44455555566666665555
Q ss_pred HHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhh
Q 003439 368 HGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMM 438 (820)
Q Consensus 368 ~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 438 (820)
-......| -+|.....+.-.|+++++.++|.+...- .--+......|..+.|.++..++
T Consensus 83 a~iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~~~~r~-----~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTRE-------DFGSMLLNTFYNNSTKERSSIFAEGGSL-----PLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHHTTCH-----HHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHCc-------cHHHHHHHHHHcCCHHHHHHHHHHCCCh-----HHHHHHHHHcCcHHHHHHHHHHh
Confidence 55554444 1244455566677888887777665431 11111112246666777776655
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.07 E-value=0.18 Score=57.46 Aligned_cols=54 Identities=11% Similarity=0.013 Sum_probs=49.9
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHH
Q 003439 625 GACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLAR 678 (820)
Q Consensus 625 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 678 (820)
.-|...|+++.|+.+++++...-|.+..+|..|+.+|...|+|+.|.-.+..+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 346678999999999999999999999999999999999999999999988874
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.73 E-value=0.55 Score=38.61 Aligned_cols=64 Identities=8% Similarity=-0.094 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccC-------CCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 617 ASIWGALLGACRIHGNMELGAVASDRLFEVD-------SENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 617 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
..-+-.|...+...|+++.|+..++++++.. +..+..+..|+.+|.+.|++++|..+++++.+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3445578888889999999999999888743 234567889999999999999999999998765
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.10 E-value=0.19 Score=49.59 Aligned_cols=70 Identities=17% Similarity=0.178 Sum_probs=42.7
Q ss_pred CCCCC---hhHHHHHHHHHHH-----cCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh-cCChhHHHHHHHHHhccC
Q 003439 580 GIKPH---LKHYGCMVDLFGR-----AGHLGMAHNFIQNM-PVRPD--ASIWGALLGACRI-HGNMELGAVASDRLFEVD 647 (820)
Q Consensus 580 g~~p~---~~~~~~li~~~~~-----~g~~~eA~~~~~~m-~~~p~--~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~ 647 (820)
.+.|+ ...|..|...|.+ -|+.++|.+.|++. .+.|+ ..++..+...++. .|+.+++.+.+++++...
T Consensus 191 eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 191 DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 34554 3455666666666 36666666666665 44553 4455555665555 377777777777777776
Q ss_pred CC
Q 003439 648 SE 649 (820)
Q Consensus 648 p~ 649 (820)
|.
T Consensus 271 p~ 272 (301)
T 3u64_A 271 PE 272 (301)
T ss_dssp GG
T ss_pred CC
Confidence 64
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.54 E-value=1.8 Score=36.74 Aligned_cols=74 Identities=9% Similarity=-0.124 Sum_probs=47.2
Q ss_pred CChhHHHHHHHHHHHcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 003439 583 PHLKHYGCMVDLFGRAGHLGM---AHNFIQNM-PVR-P--DASIWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYV 655 (820)
Q Consensus 583 p~~~~~~~li~~~~~~g~~~e---A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 655 (820)
|+..+--.+..++.+.....+ ++.++++. ... | .....-.|.-++.+.|+++.|++.++.+++.+|+|..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 444444445555555554444 55555554 212 3 1123445667899999999999999999999998766544
Q ss_pred h
Q 003439 656 L 656 (820)
Q Consensus 656 ~ 656 (820)
+
T Consensus 113 L 113 (126)
T 1nzn_A 113 L 113 (126)
T ss_dssp H
T ss_pred H
Confidence 3
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.89 E-value=1.1 Score=38.30 Aligned_cols=46 Identities=7% Similarity=0.077 Sum_probs=22.9
Q ss_pred hHHHHHHHHHhccCCCC-cchHHhHHHHhhhcCCcchHHHHHHHHHh
Q 003439 634 ELGAVASDRLFEVDSEN-VGYYVLMSNIYANVGKWEGVDEVRSLARD 679 (820)
Q Consensus 634 ~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 679 (820)
.+|+.+++.++..+|.. -..+..|+-.+.+.|++++|.++.+.+.+
T Consensus 60 ~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 60 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34555555555544422 23333445555555555555555555543
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=88.66 E-value=9.8 Score=32.48 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=31.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 578 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 578 (820)
-+......|.-++-.+++.++... .+|+......+.+||.+.|+..++.+++.+.-++
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344445555555555555554332 3555555556666666666666666666555543
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.01 E-value=1 Score=39.36 Aligned_cols=52 Identities=8% Similarity=-0.091 Sum_probs=35.6
Q ss_pred CChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhCCC
Q 003439 631 GNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDRGL 682 (820)
Q Consensus 631 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 682 (820)
+|.++|+++|+.++.+...-+..+...+..-.+.|+.+.|++++......+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 6777777777777665444445556666666777888888888777776543
No 240
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=86.41 E-value=46 Score=37.19 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=25.4
Q ss_pred HHHHHhhcCCChhHHHHHhccCCC---CCcccHHHHHHHHHhC
Q 003439 183 SLLHMYCRFGLANVARKLFDDMPV---RDSGSWNAMISGYCQS 222 (820)
Q Consensus 183 ~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 222 (820)
++|--+.|||++++|.++.++... .-...+-..+..|+.+
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 456667799999999998877642 1124677777777743
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=81.53 E-value=11 Score=33.00 Aligned_cols=68 Identities=12% Similarity=0.201 Sum_probs=41.4
Q ss_pred CCCCchHHHHHHHHHHHcCCh------HHHHHHHHhhhhcCCCCCCccc----HhhHH---HHhhccCChhHHHHHHHHH
Q 003439 408 PVKDVISWNTLITGYAQNGLA------SEAIEVFQMMEECNEINPNQGT----YVSIL---PAYSHVGALRQGIKIHARV 474 (820)
Q Consensus 408 ~~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~~g~~pd~~t----~~~ll---~a~~~~~~~~~a~~i~~~~ 474 (820)
...|..+|-..+.-.-+.|++ ++..++|++... .++|+... |.-+. ..+...+++++|+++|+.+
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 345778888888888888988 888888887765 46665321 11110 0112235666666666666
Q ss_pred HHh
Q 003439 475 IKN 477 (820)
Q Consensus 475 ~~~ 477 (820)
++.
T Consensus 87 ~~~ 89 (161)
T 4h7y_A 87 RAN 89 (161)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 242
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.16 E-value=6.9 Score=31.18 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHc
Q 003439 464 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 543 (820)
Q Consensus 464 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 543 (820)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||+.+|-+|-.. +.|..+++..-+.++..+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 4555555555555443 222222223346678999999999999999999998877553 567777777777777666
Q ss_pred CCCCChhHH
Q 003439 544 GVRPDHITF 552 (820)
Q Consensus 544 g~~p~~~t~ 552 (820)
| .|....|
T Consensus 99 g-~p~~q~F 106 (116)
T 2p58_C 99 Q-DPRIQTF 106 (116)
T ss_dssp C-CHHHHHH
T ss_pred C-CHHHHHH
Confidence 5 4444444
No 243
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=80.37 E-value=77 Score=35.19 Aligned_cols=251 Identities=15% Similarity=0.093 Sum_probs=128.8
Q ss_pred HHHHHHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCC
Q 003439 179 FVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVCARSD 258 (820)
Q Consensus 179 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 258 (820)
..-+.-+..+.+.+++....+.+.. +..+...-.....+....|+..+|......+-..|.. .......++..+.+.|
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCC
Confidence 3345556667778888888887776 4334444445666777888888888877777655432 3344455555555444
Q ss_pred ChHH--HHHHHHHHHHhC-----------CCccH-HHHHHHHHHHHccCCHHHHHHHHhccCCCCchH---HHHHHHHHH
Q 003439 259 NILS--GLLIHLYIVKHG-----------LEFNL-FVSNNLINMYAKFGMMRHALRVFDQMMERDVVS---WNSIIAAYE 321 (820)
Q Consensus 259 ~~~~--a~~~~~~~~~~g-----------~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~---~~~li~~~~ 321 (820)
.+.. ..+=...+...| +.++. .....++..+.+-..+ ....... .++... ...-+.-+.
T Consensus 151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVA 226 (618)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHH
Confidence 4322 111112222222 11111 1122233222222111 2222111 111111 111122223
Q ss_pred hCCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHH----hcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCH
Q 003439 322 QSNDPITAHGFFTTMQQAGIQPDLLTLVSLTSIVA----QLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGII 397 (820)
Q Consensus 322 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~ 397 (820)
+ .+++.|...|......+ ..+......+-...+ ..+....+...+...... ..+..+..-.+..-.+.|++
T Consensus 227 r-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp H-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCH
T ss_pred h-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCH
Confidence 3 37789999998886544 223333333333333 223133344444443322 22222333444555678999
Q ss_pred HHHHHHHhcCCCCC--chHH-HHHHHHHHHcCChHHHHHHHHhhhh
Q 003439 398 NSACAVFEGLPVKD--VISW-NTLITGYAQNGLASEAIEVFQMMEE 440 (820)
Q Consensus 398 ~~A~~~f~~~~~~~--~~~~-~~li~~~~~~g~~~~A~~l~~~m~~ 440 (820)
+.|...|+.|+... ..-| -=+..++.+.|+.++|..+|..+..
T Consensus 302 ~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 302 RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999998642 1212 1234466788999999999998854
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.28 E-value=50 Score=32.96 Aligned_cols=135 Identities=12% Similarity=0.152 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHH----HHHHHHcCCCCCcchHHHHHHHH
Q 003439 280 FVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGF----FTTMQQAGIQPDLLTLVSLTSIV 355 (820)
Q Consensus 280 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~pd~~t~~~ll~a~ 355 (820)
..|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.++++|..+...++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3566677778888999998887643 23345566776655554 44445667888887777777776
Q ss_pred HhcCcc-----hhhhhHHHHHHHhCC-cCcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHc
Q 003439 356 AQLNDC-----RNSRSVHGFIMRRGW-FMEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQN 425 (820)
Q Consensus 356 ~~~~~~-----~~a~~i~~~~~~~g~-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 425 (820)
.....- ........+-.+.|. ..-|+.....+...|.+.|++.+|+..|-.-...|...+..++.-+.+.
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 654321 122223333333331 2246778888899999999999999888633222455555555444443
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=79.85 E-value=12 Score=33.32 Aligned_cols=56 Identities=11% Similarity=0.024 Sum_probs=29.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC-CCCCh-------hHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 003439 522 SCHGIHGQGDKALNFFRQMLDEG-VRPDH-------ITFVSLLTACSHSGLVSEGQRYFHMMQE 577 (820)
Q Consensus 522 ~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 577 (820)
..+..+|.++.|+-+.+.+.... ..|+. .++..+.+++...|++..|...|+...+
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 33444555555555555443311 12331 1455566666777777777777766543
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=79.69 E-value=16 Score=41.56 Aligned_cols=51 Identities=12% Similarity=0.008 Sum_probs=43.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003439 523 CHGIHGQGDKALNFFRQMLDEGVRPDH-ITFVSLLTACSHSGLVSEGQRYFHMM 575 (820)
Q Consensus 523 ~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m 575 (820)
-+...|+++-|+++-++... ..|+. .||..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34567899999999999988 57876 49999999999999999999888876
No 247
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.49 E-value=6.6 Score=31.26 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChHHHHHHHHHHHHc
Q 003439 464 LRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGDKALNFFRQMLDE 543 (820)
Q Consensus 464 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 543 (820)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||+.+|-+|-. .+.|..+++..-+.++..+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4555555555555443 22222222334667899999999999988999999887754 3677788888777777776
Q ss_pred CCCCChhHH
Q 003439 544 GVRPDHITF 552 (820)
Q Consensus 544 g~~p~~~t~ 552 (820)
| .|....|
T Consensus 98 g-~p~~q~F 105 (115)
T 2uwj_G 98 S-DPALADF 105 (115)
T ss_dssp S-SHHHHHH
T ss_pred C-CHHHHHH
Confidence 6 4444444
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=79.41 E-value=14 Score=32.93 Aligned_cols=69 Identities=13% Similarity=0.086 Sum_probs=45.0
Q ss_pred cCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh-------hHHHHHHHHHHHcCCHHHHHHHHHhC
Q 003439 543 EGVRPDH--ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHL-------KHYGCMVDLFGRAGHLGMAHNFIQNM 611 (820)
Q Consensus 543 ~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~-------~~~~~li~~~~~~g~~~eA~~~~~~m 611 (820)
.|+.|.. .++..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++..|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4555643 345555667788889998888877765543444542 35677788999999999999888774
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.29 E-value=54 Score=32.73 Aligned_cols=169 Identities=5% Similarity=-0.000 Sum_probs=94.5
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHH----HHhhhhcCCCCCCcccHhhHHHHh
Q 003439 383 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEV----FQMMEECNEINPNQGTYVSILPAY 458 (820)
Q Consensus 383 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~~g~~pd~~t~~~ll~a~ 458 (820)
.+.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+ .+++++......++..+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~-~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDL-AEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Confidence 445666678888899988887532 23345566776555543 444444 67777777666666655
Q ss_pred hccCChh-HHHHHHHHHHH----hC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhc---C
Q 003439 459 SHVGALR-QGIKIHARVIK----NC--LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIH---G 528 (820)
Q Consensus 459 ~~~~~~~-~a~~i~~~~~~----~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g 528 (820)
.....-+ .=..+...+++ .| ..-++.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 5433211 12333344433 32 2236778888899999999999999877422211233333333222222 2
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 003439 529 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEE 578 (820)
Q Consensus 529 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 578 (820)
...++-- ..-..+ --|...|++..|..+|+...++
T Consensus 183 ~~~e~dl--------------f~~RaV-L~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTVAE--------------FFSRLV-FNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHHHH--------------HHHHHH-HHHHHTTBHHHHHHHHHHHHHH
T ss_pred CcchHHH--------------HHHHHH-HHHHHhcCHHHHHHHHHHHHHH
Confidence 2222111 111112 2345678899999988877654
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=78.34 E-value=12 Score=30.10 Aligned_cols=63 Identities=11% Similarity=0.193 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 003439 529 QGDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 593 (820)
Q Consensus 529 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 593 (820)
+.-+..+-++.+....+-|+.....+.|.||.+.+++.-|.++|+.++.+.|-. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 445666777777778899999999999999999999999999999988764433 556777654
No 251
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=77.79 E-value=22 Score=30.67 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCcchH
Q 003439 621 GALLGACRIHGNMELGAVASDRLFEVDSENVGYY 654 (820)
Q Consensus 621 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 654 (820)
--|.-++.+.|++++|++..+.+++.+|+|..+.
T Consensus 81 YyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 81 YYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 3466689999999999999999999999875543
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.73 E-value=76 Score=33.62 Aligned_cols=94 Identities=11% Similarity=0.085 Sum_probs=69.5
Q ss_pred chHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHHhHHhh-CCCCC----hhH
Q 003439 518 NAIISCHGIHGQGDKALNFFRQMLDEGVRPDH-----ITFVSLLTACSHSGLVSEGQRYFHMMQEEF-GIKPH----LKH 587 (820)
Q Consensus 518 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-g~~p~----~~~ 587 (820)
..|...|...|++.+|.+++.++...-...+. ..+...+..|...+++.+|..+...+.... ...+. ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45678888999999999999998754222222 256666778999999999999998875321 22222 256
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC
Q 003439 588 YGCMVDLFGRAGHLGMAHNFIQNM 611 (820)
Q Consensus 588 ~~~li~~~~~~g~~~eA~~~~~~m 611 (820)
|.+++..+...+++.+|.+.|.+.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 788888999999999998887665
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.66 E-value=62 Score=32.57 Aligned_cols=166 Identities=9% Similarity=0.035 Sum_probs=94.8
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHH----HhhhhcCCCCCCcccHhhHHHHh
Q 003439 383 IGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVF----QMMEECNEINPNQGTYVSILPAY 458 (820)
Q Consensus 383 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~~g~~pd~~t~~~ll~a~ 458 (820)
.+.++..=|.+.+++++|.+++-. -...+.+.|+..-|-++- +-..+ .++++|..+...++..+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~-~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQ-AGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Confidence 345666678889999999887532 233455566665544433 44444 67778877776666666
Q ss_pred hccCChhHH-HHHHHHHH----HhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHHHhcCChH
Q 003439 459 SHVGALRQG-IKIHARVI----KNC--LCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCHGIHGQGD 531 (820)
Q Consensus 459 ~~~~~~~~a-~~i~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 531 (820)
.....-+-. ..+...++ +.| ..-|+.....+...|.+.+++.+|+.-|-.-..+....+..|+.-+...+
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~--- 181 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD--- 181 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS---
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc---
Confidence 555432211 22333333 333 33467777888999999999999998883211111233333333222222
Q ss_pred HHHHHHHHHHHcCCCCChh-HHH-HHHHHHHhcCCHHHHHHHHHHhHH
Q 003439 532 KALNFFRQMLDEGVRPDHI-TFV-SLLTACSHSGLVSEGQRYFHMMQE 577 (820)
Q Consensus 532 ~A~~l~~~m~~~g~~p~~~-t~~-~ll~a~~~~g~~~~a~~~~~~m~~ 577 (820)
+ |... .|. ..+--|...+++..|..+++...+
T Consensus 182 ------------~--~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 182 ------------E--SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------C--GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------C--CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1 2211 221 122235667889999888777664
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.34 E-value=64 Score=34.24 Aligned_cols=93 Identities=12% Similarity=0.065 Sum_probs=64.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhh-CCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHhCC-----CC--CCH--HH
Q 003439 553 VSLLTACSHSGLVSEGQRYFHMMQEEF-GIKPH---LKHYGCMVDLFGRAGHLGMAHNFIQNMP-----VR--PDA--SI 619 (820)
Q Consensus 553 ~~ll~a~~~~g~~~~a~~~~~~m~~~~-g~~p~---~~~~~~li~~~~~~g~~~eA~~~~~~m~-----~~--p~~--~~ 619 (820)
..|...+...|++.+|..++..+..+. |..+. .+.+..-+.+|...+++..|..+++++. .. |+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 356778888999999999999876543 33222 3566677888889999999998888751 22 221 24
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhc
Q 003439 620 WGALLGACRIHGNMELGAVASDRLFE 645 (820)
Q Consensus 620 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 645 (820)
+..++..+...+++.+|-+.|.++++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555566677888888777777664
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=77.30 E-value=3.2 Score=43.59 Aligned_cols=68 Identities=10% Similarity=-0.021 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHh-----CCCCcCCc
Q 003439 620 WGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARD-----RGLKKTPG 687 (820)
Q Consensus 620 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 687 (820)
...++.++...|+.++++..++.++..+|-+...+..|..+|.+.|+..+|.+.|+...+ .|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 345667777888888998888888889998888888898999999999999888877643 47766553
No 256
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.79 E-value=17 Score=28.90 Aligned_cols=78 Identities=12% Similarity=0.017 Sum_probs=57.4
Q ss_pred ChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHH
Q 003439 259 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 338 (820)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 338 (820)
.-++|..|-+.+...|- ...+--.-+..+...|++++|..+.+.+.-||...|-+|-.. +.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45666666666666553 333333334556788999999999999999999999988765 67888888888877766
Q ss_pred cC
Q 003439 339 AG 340 (820)
Q Consensus 339 ~g 340 (820)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=76.62 E-value=11 Score=32.09 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchH
Q 003439 619 IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYY 654 (820)
Q Consensus 619 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 654 (820)
.+--|.-|+.+.|++++|++..+.+++.+|+|..+.
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 445566778889999999999999999999875543
No 258
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.06 E-value=18 Score=28.85 Aligned_cols=78 Identities=10% Similarity=0.031 Sum_probs=55.9
Q ss_pred ChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhhHHHHHHHHHH
Q 003439 259 NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPITAHGFFTTMQQ 338 (820)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 338 (820)
.-++|..|-+.+...|- ...+--.-+..+...|++++|..+.+.+.-||...|-+|-.. +.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45666666666666553 333333334556788999999999999999999999988765 56777777777767755
Q ss_pred cC
Q 003439 339 AG 340 (820)
Q Consensus 339 ~g 340 (820)
.|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 259
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=75.12 E-value=12 Score=39.08 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=46.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHH----hhCCCCChhH
Q 003439 520 IISCHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQE----EFGIKPHLKH 587 (820)
Q Consensus 520 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~g~~p~~~~ 587 (820)
++..+...|++++|+..++.+... .| +...+..++.++...|+..+|.+.|+...+ +.|+.|...+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345556667777777777777663 44 566777888888888888888888776543 4577777644
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=74.75 E-value=74 Score=32.01 Aligned_cols=139 Identities=13% Similarity=0.057 Sum_probs=88.6
Q ss_pred HHHHHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHH----HHHHHCCCCCChHHHHhHHHhhh
Q 003439 180 VAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDIL----DEMRLEGVSMDPITVASILPVCA 255 (820)
Q Consensus 180 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~a~~ 255 (820)
++-++..-|.+.+++++|.+++-. -...+.+.|+...|-++- +.+.+.++++|..+..-++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 566777788899999999988632 234566778776665554 55567788999888877777776
Q ss_pred cCCChH-HHHHHHHHH----HHhC--CCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCChhh
Q 003439 256 RSDNIL-SGLLIHLYI----VKHG--LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSNDPIT 328 (820)
Q Consensus 256 ~~~~~~-~a~~~~~~~----~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~ 328 (820)
....-+ .-..+...+ .+.| ..-|......+...|.+.+++.+|+.-|-.-.++.+..+..|+.-+.+.+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 554322 112233333 3344 234677778888889999999999888843222223566555555555444433
Q ss_pred H
Q 003439 329 A 329 (820)
Q Consensus 329 A 329 (820)
+
T Consensus 186 ~ 186 (336)
T 3lpz_A 186 A 186 (336)
T ss_dssp H
T ss_pred H
Confidence 3
No 261
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=73.33 E-value=1.4e+02 Score=34.70 Aligned_cols=246 Identities=13% Similarity=-0.013 Sum_probs=126.4
Q ss_pred HHHhcCCHHHHHHHHhcCCCC----Cc--hHHHHHHHHHHHcCChHHHHHHHHhhhhcCCC------CCCcccHhh--HH
Q 003439 390 MYAKLGIINSACAVFEGLPVK----DV--ISWNTLITGYAQNGLASEAIEVFQMMEECNEI------NPNQGTYVS--IL 455 (820)
Q Consensus 390 ~y~~~g~~~~A~~~f~~~~~~----~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~------~pd~~t~~~--ll 455 (820)
+....|+.+++..+++..... +. ..-..+.-|....|..++++.++......... .+....-.. +-
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 355678888899888876542 21 22334455677777777888877775541110 010111111 22
Q ss_pred HHhhccCChhHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhhCC--CCC-ccccchHHHHHHhcCCh
Q 003439 456 PAYSHVGALRQGIKIHARVIKNCLCFDV--FVATCLVDMYGKCGRIDDAMSLFYQVP--RSS-SVPWNAIISCHGIHGQG 530 (820)
Q Consensus 456 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~ 530 (820)
.++...++ +++.+.+..++...- +.. ...-+|.-.|.-.|+-+....++..+. ..+ +.-.-++.-|+...|+.
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 22233333 334444444443211 111 112233344556677777777766543 122 11233344455578898
Q ss_pred HHHHHHHHHHHHcCCCCCh-hHHH---HHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH--HcCCHHHH
Q 003439 531 DKALNFFRQMLDEGVRPDH-ITFV---SLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFG--RAGHLGMA 604 (820)
Q Consensus 531 ~~A~~l~~~m~~~g~~p~~-~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~--~~g~~~eA 604 (820)
+.+..+.+.+... +|. +-|. .+.-+|+..|+.....++++.+... ++..+-..-+-+++ -.|+.+.+
T Consensus 541 e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d----~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 541 ELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD----SNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp GGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC----CcHHHHHHHHHHHHhhccCCHHHH
Confidence 8888888888773 333 3333 3344678889988887788887753 23223333333343 35665556
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHH--hcCCh-hHHHHHHHHHh
Q 003439 605 HNFIQNMPVRPDASIWGALLGACR--IHGNM-ELGAVASDRLF 644 (820)
Q Consensus 605 ~~~~~~m~~~p~~~~~~~ll~~~~--~~g~~-~~a~~~~~~~~ 644 (820)
.++++.+....|..+......++. ..|+. ..++..+.++.
T Consensus 614 ~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 614 PRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 666654422334444333333332 23332 45666666664
No 262
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=70.23 E-value=42 Score=37.56 Aligned_cols=80 Identities=10% Similarity=-0.024 Sum_probs=39.7
Q ss_pred HHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--
Q 003439 418 LITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGK-- 495 (820)
Q Consensus 418 li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~-- 495 (820)
....+.-.|+++.|++++.+. ...|.+.+...+..+.-.+- ...++..- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~-----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF-----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSF 367 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT-----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc-----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHh
Confidence 445566678888888877643 23455555555544433322 11111110 01 11 2225667777764
Q ss_pred -cCCHHHHHHHHhhC
Q 003439 496 -CGRIDDAMSLFYQV 509 (820)
Q Consensus 496 -~g~~~~A~~~~~~~ 509 (820)
..+..+|.+.|--+
T Consensus 368 ~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTCHHHHHHHHHGG
T ss_pred hcCCHHHHHHHHHHH
Confidence 46777777777554
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=70.18 E-value=41 Score=40.86 Aligned_cols=167 Identities=10% Similarity=0.036 Sum_probs=101.2
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCC
Q 003439 384 GNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGA 463 (820)
Q Consensus 384 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~ 463 (820)
...++..+.+.+..+.|.++..-.+. +..+--.+...|...|++++|.+.|++... |+..+......+.
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~~~~~-------- 883 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAVLR-------- 883 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSCSSHH--------
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhhhhhc--------
Confidence 34566667778888888876655543 443334455678889999999999988643 4444332211110
Q ss_pred hhHHHHHHHHHHHh-C-CCCchhHHHHHHHHHHhcCCHHHHHHHHh----hCCCCCc--c--ccchHHHHHHhcCChHHH
Q 003439 464 LRQGIKIHARVIKN-C-LCFDVFVATCLVDMYGKCGRIDDAMSLFY----QVPRSSS--V--PWNAIISCHGIHGQGDKA 533 (820)
Q Consensus 464 ~~~a~~i~~~~~~~-g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~----~~~~~~~--~--~~~~li~~~~~~g~~~~A 533 (820)
. ...+... . ...-..-|.-++..+.+.|..+.+.++-. ...+.+. . .|..+..++...|++++|
T Consensus 884 -----~-~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 884 -----E-FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp -----H-HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred -----c-cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 0 1111111 1 11123346667777778887777665543 2222222 1 488889999999999999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 003439 534 LNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQ 569 (820)
Q Consensus 534 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 569 (820)
...+-.+-.... -...+..|+..++..|..++-.
T Consensus 958 y~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 958 HVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp GHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhh
Confidence 998887766433 2446666777777766655433
No 264
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=69.97 E-value=20 Score=28.77 Aligned_cols=61 Identities=15% Similarity=0.130 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHH
Q 003439 225 AVEALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLI 286 (820)
Q Consensus 225 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 286 (820)
.-+..+-++.+....+.|++....+.|+||.+.+++..|.++++-+...- .....+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 34566677777777888888888888899988888888888888776442 22234555554
No 265
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=69.87 E-value=1.7e+02 Score=34.10 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=14.1
Q ss_pred HHHHHHHhhcCCChhHHHHHhccC
Q 003439 181 AASLLHMYCRFGLANVARKLFDDM 204 (820)
Q Consensus 181 ~~~li~~y~~~g~~~~A~~~f~~m 204 (820)
|..++..+.+.++.+.+.++|+..
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l 256 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKL 256 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444455556677777777664
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=69.60 E-value=87 Score=32.46 Aligned_cols=56 Identities=11% Similarity=0.029 Sum_probs=24.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHh
Q 003439 555 LLTACSHSGLVSEGQRYFHMMQEEFGIKPH----LKHYGCMVDLFGRAGHLGMAHNFIQN 610 (820)
Q Consensus 555 ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~ 610 (820)
++..|...|++.+|.+++..+.+...-..+ .++|..-+.+|...|++.++...+.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344444555555555555444433211111 12333344444455555555544433
No 267
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=68.09 E-value=81 Score=38.24 Aligned_cols=142 Identities=10% Similarity=0.001 Sum_probs=89.7
Q ss_pred hHHHHhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCcc-------------
Q 003439 453 SILPAYSHVGALRQGIKIHARVIKNCLCFDVFVATCLVDMYGKCGRIDDAMSLFYQVPR----SSSV------------- 515 (820)
Q Consensus 453 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~------------- 515 (820)
.++..+...+..+.+.++.... +.+....-.+..+|..+|++++|.+.|.+... .+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 4555666777777776654332 23444444566788899999999999987641 1100
Q ss_pred ---------ccchHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-----HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC
Q 003439 516 ---------PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDHI-----TFVSLLTACSHSGLVSEGQRYFHMMQEEFGI 581 (820)
Q Consensus 516 ---------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~ 581 (820)
=|.-++..|.++|.++.++++-+..++.. .++.. .|..+..++.+.|++++|...+-.+... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~-~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~- 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK-ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-P- 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC-CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-S-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-H-
Confidence 04556777778888888888877777642 22221 4666778888888888888777666532 2
Q ss_pred CCChhHHHHHHHHHHHcCCHHH
Q 003439 582 KPHLKHYGCMVDLFGRAGHLGM 603 (820)
Q Consensus 582 ~p~~~~~~~li~~~~~~g~~~e 603 (820)
-.......||..++..|.+++
T Consensus 969 -~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 969 -LKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp -SCHHHHHHHHHHHHHHCCHHH
T ss_pred -HHHHHHHHHHHHHHhCCChhh
Confidence 223455666666666555443
No 268
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=67.98 E-value=87 Score=30.01 Aligned_cols=49 Identities=6% Similarity=-0.143 Sum_probs=24.6
Q ss_pred hccCChhHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHh
Q 003439 459 SHVGALRQGIKIHARVIKNCLCFDVF--VATCLVDMYGKCGRIDDAMSLFY 507 (820)
Q Consensus 459 ~~~~~~~~a~~i~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~ 507 (820)
...+......++.+.+.+.|..++.. ...+.+...++.|+.+-+..+++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 33445444556666666666554432 11222333445566665555555
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=67.11 E-value=26 Score=29.76 Aligned_cols=62 Identities=15% Similarity=0.275 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 003439 530 GDKALNFFRQMLDEGVRPDHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVD 593 (820)
Q Consensus 530 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 593 (820)
.-+..+-++.+....+-|+.......|.||.+.+++.-|.++|+.++.+.| +...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 345666667777778899999999999999999999999999999887643 44557777654
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=61.15 E-value=67 Score=31.10 Aligned_cols=122 Identities=14% Similarity=0.105 Sum_probs=66.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHHcCCH
Q 003439 523 CHGIHGQGDKALNFFRQMLDEGVRP-DHITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCMVDLFGRAGHL 601 (820)
Q Consensus 523 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~ 601 (820)
...+.|..++|++....-++. .| |...=..|+.-++-.|+++.|.+-++...+ +.|+...-..+..-+.++
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH---
Confidence 345677788888877777774 45 444455567777888888888887766653 355432221111111111
Q ss_pred HHHH-HHHHhC--C--CCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHhccCCCCcc
Q 003439 602 GMAH-NFIQNM--P--VRPDASIWGALLGACR--IHGNMELGAVASDRLFEVDSENVG 652 (820)
Q Consensus 602 ~eA~-~~~~~m--~--~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~ 652 (820)
+... ++|..- | +.....-...|+.+.. ..|+.+.|..+-+++++.-|..++
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111 222211 1 1111222234444443 458888888888888887776554
No 271
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=60.35 E-value=2.9 Score=26.70 Aligned_cols=13 Identities=46% Similarity=1.140 Sum_probs=9.9
Q ss_pred ccc-cCCcCCCCCC
Q 003439 807 HHF-KDGICSCGDY 819 (820)
Q Consensus 807 h~f-~~g~csc~~~ 819 (820)
|+. ++|.||||-|
T Consensus 16 HRL~~~~~C~CG~y 29 (42)
T 2l0z_A 16 HRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCCTTSSBTTTTB
T ss_pred ceecCCceeccccc
Confidence 444 4899999976
No 272
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=58.77 E-value=1.8 Score=23.84 Aligned_cols=13 Identities=46% Similarity=1.584 Sum_probs=10.3
Q ss_pred cccCCcC--CCCCCC
Q 003439 808 HFKDGIC--SCGDYW 820 (820)
Q Consensus 808 ~f~~g~c--sc~~~w 820 (820)
.|.+|.| .||+-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 4888998 788877
No 273
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=57.81 E-value=45 Score=34.02 Aligned_cols=89 Identities=10% Similarity=0.113 Sum_probs=44.6
Q ss_pred CCCCCcccHHHHHHhhc--ChHHHHHHHHHHHHhCCCCChhh--hHHHHHHHHccCChHHHHHHhcccCCCCc-chHHHH
Q 003439 42 ENESREIDFDDLFQSCT--KLHHVKRLHALLVVSGKIKTVFS--STKLVNFYANLGDLSFSRHTFDHISYRNV-YTWNSM 116 (820)
Q Consensus 42 ~~~~~~~~~~~ll~~~~--~~~~~~~~~~~~~~~g~~~~~~~--~~~ll~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~l 116 (820)
....|..-.+.|..+|. +....+ .+++.|..++... ..+.+...+..|+.+-+..+++.-...+. .-++.
T Consensus 13 ~~~~d~~g~t~L~~Aa~~g~~~~v~----~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~- 87 (364)
T 3ljn_A 13 RIKSDDENMEKIHVAARKGQTDEVR----RLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKP- 87 (364)
T ss_dssp ---CCHHHHHHHHHHHHHTCHHHHH----HHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCH-
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHH----HHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCH-
Confidence 33445555666666654 444333 3456676554432 22344555667777777777765443333 22233
Q ss_pred HHHHHhCCCchHHHHHHHH
Q 003439 117 ISVYVRCGRLSEAVDCFYQ 135 (820)
Q Consensus 117 i~~~~~~g~~~~A~~l~~~ 135 (820)
+..-+..|+.+-+..+++.
T Consensus 88 L~~A~~~g~~~~v~~Ll~~ 106 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEG 106 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh
Confidence 3333456666555554443
No 274
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=57.38 E-value=23 Score=34.36 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=42.1
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003439 594 LFGRAGHLGMAHNFIQNM-PVRP-DASIWGALLGACRIHGNMELGAVASDRLFEVDSEN 650 (820)
Q Consensus 594 ~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 650 (820)
.+.+.|.+++|++....- ...| |...-..|+..++..|+++.|..-++...+++|+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 455778888888766544 3344 55577778888888888888888888888888853
No 275
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=55.14 E-value=45 Score=28.38 Aligned_cols=59 Identities=14% Similarity=0.136 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHCCCCCChHHHHhHHHhhhcCCChHHHHHHHHHHHHhCCCccHHHHHHHH
Q 003439 227 EALDILDEMRLEGVSMDPITVASILPVCARSDNILSGLLIHLYIVKHGLEFNLFVSNNLI 286 (820)
Q Consensus 227 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 286 (820)
+..+-++.+...++.|++......|++|.+.+++..|..+++-+...- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 556667777777888999999999999999999999999888776543 23344555554
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=53.59 E-value=63 Score=29.72 Aligned_cols=103 Identities=17% Similarity=0.312 Sum_probs=70.6
Q ss_pred HHHHHHHHhCC-CCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHhc--cCCCCcchHHhHHHHhhhcCCcchHHHHHH
Q 003439 602 GMAHNFIQNMP-VRPDAS---IWGALLGACRIHGNMELGAVASDRLFE--VDSENVGYYVLMSNIYANVGKWEGVDEVRS 675 (820)
Q Consensus 602 ~eA~~~~~~m~-~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 675 (820)
+.+...|...+ .+.|.- .|-.++..+ ..++...+..+|+.+.. +.-.-+..|...+..+...|++++|.++++
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444454442 344543 565555544 23446688899998875 556677889999999999999999999999
Q ss_pred HHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHHhCCCc
Q 003439 676 LARDRGLKKTPGWSSIEVNNKVDIFYTGNRTHPKYEKIYDELRNLTAKMKSLGYV 730 (820)
Q Consensus 676 ~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 730 (820)
.-.+++-+| .+.+.....+....|.+.+++
T Consensus 140 ~GI~~~A~P-------------------------~~rL~~~~~~F~~R~~~~~~~ 169 (202)
T 3esl_A 140 LGAENNCRP-------------------------YNRLLRSLSNYEDRLREMNIV 169 (202)
T ss_dssp HHHHTTCBS-------------------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCcc-------------------------HHHHHHHHHHHHHHHHhcCCC
Confidence 988876533 134455556777788887763
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.66 E-value=1.4e+02 Score=31.33 Aligned_cols=96 Identities=6% Similarity=-0.030 Sum_probs=58.9
Q ss_pred ccchHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHH--
Q 003439 516 PWNAIISCHGIHGQGDKALNFFRQMLDEGVRPDH--ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGIKPHLKHYGCM-- 591 (820)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l-- 591 (820)
.+..+..-|.+.|+.++|.+.|.++...-..+.. ..+..++..+...+++..+..+..++.....-.++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 3555666677777777777777777765444443 356667777888888888888887776543333333222111
Q ss_pred --HHHHHHcCCHHHHHHHHHhC
Q 003439 592 --VDLFGRAGHLGMAHNFIQNM 611 (820)
Q Consensus 592 --i~~~~~~g~~~eA~~~~~~m 611 (820)
+-.+...+++.+|.+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 12233467888887776554
No 278
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=50.21 E-value=86 Score=31.97 Aligned_cols=72 Identities=8% Similarity=0.084 Sum_probs=49.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHhccCCCC---chHHHHHHHHHHhCCC--hhhHHHHHHHHHHcCCCCCcchHHHHHH
Q 003439 282 SNNLINMYAKFGMMRHALRVFDQMMERD---VVSWNSIIAAYEQSND--PITAHGFFTTMQQAGIQPDLLTLVSLTS 353 (820)
Q Consensus 282 ~~~li~~y~~~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 353 (820)
.+.++.=|...|+.++|.+.++++..|. .+...++..++-+.++ .+...+++..+...|+-+.......+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 4667888889999999999999998763 3345556666555433 3567788888888776655444433333
No 279
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=50.09 E-value=2.4e+02 Score=29.25 Aligned_cols=112 Identities=13% Similarity=0.161 Sum_probs=48.0
Q ss_pred HHhhcCCChhHHHHHhccCCCCCcc--cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChH--HHHhHHHhhhcCCChH
Q 003439 186 HMYCRFGLANVARKLFDDMPVRDSG--SWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPI--TVASILPVCARSDNIL 261 (820)
Q Consensus 186 ~~y~~~g~~~~A~~~f~~m~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~ 261 (820)
..-+..|+++-+..+++.-..++.. ...+.+...++.|+.+-+..++ +.|..++.. .-.+.+...+..|+.+
T Consensus 19 ~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~g~~~ 94 (437)
T 1n11_A 19 HVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAARIGHTN 94 (437)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence 3344556666666666543322211 1122333444556554333333 334333221 1112333333445543
Q ss_pred HHHHHHHHHHHhCCCccHH--HHHHHHHHHHccCCHHHHHHHHhcc
Q 003439 262 SGLLIHLYIVKHGLEFNLF--VSNNLINMYAKFGMMRHALRVFDQM 305 (820)
Q Consensus 262 ~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~m 305 (820)
+.+.+++.|..++.. ...+-+...++.|+.+.+..+++.-
T Consensus 95 ----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 136 (437)
T 1n11_A 95 ----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136 (437)
T ss_dssp ----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred ----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Confidence 333444445443321 1122334455667777666666543
No 280
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=47.31 E-value=1.6e+02 Score=26.50 Aligned_cols=142 Identities=13% Similarity=0.038 Sum_probs=63.8
Q ss_pred CCcHHHHHHHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHHHHhHHHhh
Q 003439 175 EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPITVASILPVC 254 (820)
Q Consensus 175 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 254 (820)
.+|..+-...+..+.+.|..+....+.+.+..+|...-...+.++.+.|.. ++...+.++.. .++...-...+.++
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVAL 100 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 345555555555555555544444444445455554444455555555543 23333333332 24544445555555
Q ss_pred hcCCChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCC
Q 003439 255 ARSDNILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN 324 (820)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g 324 (820)
...++.+....+.. +. -.++..+-...+.+..+.|+.+....+.+.+..++...-...+.++.+.|
T Consensus 101 ~~~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 101 GQIGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHHCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHhCcHHHHHHHHH-HH---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 55544332222222 11 13445555555555555554333333333333344433334444444433
No 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=44.82 E-value=1.6e+02 Score=27.26 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=13.0
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCC
Q 003439 218 GYCQSGNAVEALDILDEMRLEGVSMD 243 (820)
Q Consensus 218 ~~~~~g~~~~A~~l~~~m~~~g~~p~ 243 (820)
..++.|+.+....+++.+.+.|..++
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 34455555555555555544444433
No 282
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=44.25 E-value=2.1e+02 Score=27.06 Aligned_cols=14 Identities=21% Similarity=0.551 Sum_probs=6.8
Q ss_pred HHcCCHHHHHHHHH
Q 003439 596 GRAGHLGMAHNFIQ 609 (820)
Q Consensus 596 ~~~g~~~eA~~~~~ 609 (820)
.+.|+.+-+..+++
T Consensus 227 ~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 227 VEKKHLGLVQRLLE 240 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34455554444444
No 283
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=44.04 E-value=7.7 Score=28.27 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=17.1
Q ss_pred ceEEEecCCccccccCCcCC
Q 003439 796 REIIVRDSNRFHHFKDGICS 815 (820)
Q Consensus 796 r~i~~rd~~~~h~f~~g~cs 815 (820)
..|-+.|..-.|+|+||+-+
T Consensus 8 k~v~LkDGstvyiFKDGKMa 27 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMG 27 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEE
T ss_pred eeEecCCCcEEEEEcCCcee
Confidence 45788999999999999854
No 284
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.02 E-value=39 Score=35.71 Aligned_cols=61 Identities=5% Similarity=-0.046 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhh-CCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 003439 551 TFVSLLTACSHSGLVSEGQRYFHMMQEEF-GIKPHLKHYGCMVDLFGRAGHLGMAHNFIQNM 611 (820)
Q Consensus 551 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-g~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m 611 (820)
+...+..-+.+.|++++|.+.+.++.... +...-...+-.++.++...+++..+...++++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 55667777777777777777777776432 22222355556666666677777777666655
No 285
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=42.28 E-value=2e+02 Score=27.84 Aligned_cols=48 Identities=8% Similarity=0.067 Sum_probs=20.5
Q ss_pred HHHHhhcCCChhHHHHHhccCCCC-CcccHHHHHHHHHhCCChhHHHHH
Q 003439 184 LLHMYCRFGLANVARKLFDDMPVR-DSGSWNAMISGYCQSGNAVEALDI 231 (820)
Q Consensus 184 li~~y~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~g~~~~A~~l 231 (820)
.+...+..|+.+-+..+++.-... +...-.+.+...++.|+.+-+.-+
T Consensus 132 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~L 180 (285)
T 3kea_A 132 SFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILL 180 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHH
Confidence 333444455555555555543322 111223333444455554433333
No 286
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=42.10 E-value=89 Score=28.74 Aligned_cols=61 Identities=7% Similarity=0.059 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchHHHHH
Q 003439 464 LRQGIKIHARVIKNCLCF-DVFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAIISCH 524 (820)
Q Consensus 464 ~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 524 (820)
......+|..|...|+-. -...|......+...|++++|.++|+.-.+....|...|...|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~ 156 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSL 156 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 557778888887776644 3456777777788888888888888776666666655554433
No 287
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=42.06 E-value=1.1e+02 Score=25.86 Aligned_cols=65 Identities=9% Similarity=0.117 Sum_probs=45.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHhccCCCC---chHHHHHHHHHHhCCC--hhhHHHHHHHHHHcCCCCCcc
Q 003439 282 SNNLINMYAKFGMMRHALRVFDQMMERD---VVSWNSIIAAYEQSND--PITAHGFFTTMQQAGIQPDLL 346 (820)
Q Consensus 282 ~~~li~~y~~~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~pd~~ 346 (820)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. .+....++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 4567888888999999999999987652 2345555566655542 356778888888777655443
No 288
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=41.46 E-value=2.1e+02 Score=26.29 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=10.9
Q ss_pred HhCCChhhHHHHHHHHHHcCCCC
Q 003439 321 EQSNDPITAHGFFTTMQQAGIQP 343 (820)
Q Consensus 321 ~~~g~~~~A~~~~~~m~~~g~~p 343 (820)
++.|+.+-...+++.+.+.|..+
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHcCCHHHHHHHHHHHHhcCCCC
Confidence 34455554444444444444443
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.79 E-value=1.2e+02 Score=26.40 Aligned_cols=77 Identities=6% Similarity=-0.042 Sum_probs=53.3
Q ss_pred HHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHhc--cCCCCcchHHhHHHHhhhcCCcchHHHHHH
Q 003439 602 GMAHNFIQNM-PVRPDAS---IWGALLGACRIHGNMELGAVASDRLFE--VDSENVGYYVLMSNIYANVGKWEGVDEVRS 675 (820)
Q Consensus 602 ~eA~~~~~~m-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 675 (820)
+.+...|... ..+.|.- +|-.++.. .+.+..+|+.+.. +.-.-+..|...+..+...|++++|.++++
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEY------NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTT------BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHh------cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4445566554 2344543 44444432 2348888888876 445567788899999999999999999999
Q ss_pred HHHhCCCCc
Q 003439 676 LARDRGLKK 684 (820)
Q Consensus 676 ~m~~~~~~~ 684 (820)
.-.+.+-+|
T Consensus 126 ~Gi~~~A~P 134 (152)
T 4a1g_A 126 RGIQNQAEP 134 (152)
T ss_dssp HHHHTTCBS
T ss_pred HHHHcCCcc
Confidence 988875543
No 290
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=38.98 E-value=1.2e+02 Score=27.31 Aligned_cols=150 Identities=8% Similarity=0.052 Sum_probs=66.8
Q ss_pred hhcCCChhHHHHHhccCC-C---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChHH--HHhHHHhhhcCCChH
Q 003439 188 YCRFGLANVARKLFDDMP-V---RDSGSWNAMISGYCQSGNAVEALDILDEMRLEGVSMDPIT--VASILPVCARSDNIL 261 (820)
Q Consensus 188 y~~~g~~~~A~~~f~~m~-~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~ 261 (820)
.+..|+.+....+++.-. . +|..-++.|. ..++.|+.+ +++.+.+.|..++... -.+.+...+..|+.+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLN-IAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHH-HHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 345677888777776554 2 2333334433 344556543 4444455566554322 112233333445554
Q ss_pred HHHHHHHHHHHhCCCccHH--HHHHHHHHHHccCCHHHHHHHHhcc-CC---CCchHHHHHHHHHHhCCChhhHHHHHHH
Q 003439 262 SGLLIHLYIVKHGLEFNLF--VSNNLINMYAKFGMMRHALRVFDQM-ME---RDVVSWNSIIAAYEQSNDPITAHGFFTT 335 (820)
Q Consensus 262 ~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~m-~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~ 335 (820)
..+.+++ ..+..++.. ...+.+...++.|+.+-+..+++.- .. +|..-++.|..+.........-.++++.
T Consensus 87 ~~~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~ 163 (201)
T 3hra_A 87 ILAYMLK---HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163 (201)
T ss_dssp HHHHHHH---HSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred HHHHHHh---ccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence 4333332 122111110 0112233445566666666666543 11 2333334444333222223333555566
Q ss_pred HHHcCCCCCc
Q 003439 336 MQQAGIQPDL 345 (820)
Q Consensus 336 m~~~g~~pd~ 345 (820)
+.+.|..|+.
T Consensus 164 Ll~~ga~~~~ 173 (201)
T 3hra_A 164 LMENGADQSI 173 (201)
T ss_dssp HHHTTCCTTC
T ss_pred HHHCCCCCCc
Confidence 6666655543
No 291
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=38.65 E-value=2.2e+02 Score=25.55 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCCC
Q 003439 278 NLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSND 325 (820)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~ 325 (820)
|..+-...+....+.|..+....+.+.+..+|...-...+.++.+.|.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 334444444444444443333334444444444443334444444443
No 292
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=38.31 E-value=8.5 Score=32.91 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=29.2
Q ss_pred CCceEEe----ecccccCCchhHHHHHhhhhCceEEEecCCccccccCCcCC
Q 003439 768 KSPIQIF----KNLRVCGDCHNWTKFISQITEREIIVRDSNRFHHFKDGICS 815 (820)
Q Consensus 768 ~~~~~~~----kn~r~c~dch~~~k~~s~~~~r~i~~rd~~~~h~f~~g~cs 815 (820)
.-.+||+ ++.++|-+| .++..-..-++..+||+|+++.|-
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred CcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 4557776 467888877 445555556789999999999873
No 293
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=37.89 E-value=1.6e+02 Score=28.56 Aligned_cols=55 Identities=9% Similarity=0.144 Sum_probs=27.5
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 003439 592 VDLFGRAGHLGMAHNFIQNMPVRPDA-SIWGALLGACRIHGNMELGAVASDRLFEVD 647 (820)
Q Consensus 592 i~~~~~~g~~~eA~~~~~~m~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 647 (820)
+..-+..|+.+-+.-+++.-....+. .-+.. +......|+.+....+++.-...+
T Consensus 133 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~gad~n 188 (285)
T 3kea_A 133 FYHAVMLNDVSIVSYFLSEIPSTFDLAILLSC-IHITIKNGHVDMMILLLDYMTSTN 188 (285)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHH-HHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHhCCCccccccCCccH-HHHHHHcChHHHHHHHHHcCCCCC
Confidence 34445566666555555544222222 22333 333446677776666666544443
No 294
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=37.73 E-value=1.3e+02 Score=28.46 Aligned_cols=90 Identities=4% Similarity=-0.069 Sum_probs=43.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChHHH-------HhHHHhhh--cCCChHHHHHHHHHHHHhCC---------Cc
Q 003439 216 ISGYCQSGNAVEALDILDEMRLEGVSMDPITV-------ASILPVCA--RSDNILSGLLIHLYIVKHGL---------EF 277 (820)
Q Consensus 216 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-------~~ll~a~~--~~~~~~~a~~~~~~~~~~g~---------~~ 277 (820)
+...++.|+.+....+++.+.+.|..++...+ +.+..|+. +.|+.+.++.+++.-...+. ..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 33445667777766677666666655553322 23333321 45666666655555433110 00
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHhcc
Q 003439 278 NLFVSNNLINMYAKFGMMRHALRVFDQM 305 (820)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m 305 (820)
......+.+...+..|+.+-+..+++.-
T Consensus 89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 116 (260)
T 3jxi_A 89 VYYRGQTALHIAIERRCKHYVELLVEKG 116 (260)
T ss_dssp SSEESBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 0001112334445567766666666543
No 295
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=37.46 E-value=2.3e+02 Score=25.57 Aligned_cols=49 Identities=12% Similarity=0.072 Sum_probs=21.9
Q ss_pred cchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCC
Q 003439 379 EDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGL 427 (820)
Q Consensus 379 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 427 (820)
++..+....+....+.|..+....+.+.+..+|...-...+.++.+.|.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 3444444444555555544333333343444444444444444444444
No 296
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=36.85 E-value=1.4e+02 Score=29.75 Aligned_cols=60 Identities=10% Similarity=0.125 Sum_probs=43.3
Q ss_pred HHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHHHhhhcCCcchHHHHHHHHHhC
Q 003439 607 FIQNMPVRPDAS--IWGALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSNIYANVGKWEGVDEVRSLARDR 680 (820)
Q Consensus 607 ~~~~m~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 680 (820)
+|...++.|... +..+-++...+++|+..|-...++++++.|... ..++|.++.......
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 455556666533 777888889999999999999999999998422 234566666665543
No 297
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=36.18 E-value=1.3e+02 Score=26.28 Aligned_cols=54 Identities=6% Similarity=-0.012 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccccchH
Q 003439 467 GIKIHARVIKNCLCFD-VFVATCLVDMYGKCGRIDDAMSLFYQVPRSSSVPWNAI 520 (820)
Q Consensus 467 a~~i~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l 520 (820)
...+|..|...|+-.. ...|......+...|++++|.++|+.-.+.+..|...|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL 138 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFL 138 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 5566666666555332 33455555555566666666666655444444443333
No 298
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=35.41 E-value=3e+02 Score=26.24 Aligned_cols=240 Identities=8% Similarity=-0.065 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHhhcCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHH--HCCCCCChHHHHhHHH
Q 003439 175 EWDVFVAASLLHMYCRFGLANVARKLFDDMPVRDSGSWNAMISGYCQSGNAVEALDILDEMR--LEGVSMDPITVASILP 252 (820)
Q Consensus 175 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~--~~g~~p~~~t~~~ll~ 252 (820)
.+|..+-..-+..+++.|..+....+.+.+..++...-...+.++.+.|...++..-+-... ..--.++...-...+.
T Consensus 34 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~ 113 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIE 113 (280)
T ss_dssp CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHH
Q ss_pred hhhcCC--ChHHHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchHHHHHHHHHHhCC--Chhh
Q 003439 253 VCARSD--NILSGLLIHLYIVKHGLEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVSWNSIIAAYEQSN--DPIT 328 (820)
Q Consensus 253 a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g--~~~~ 328 (820)
+++..+ +......+...+.+.--.++..+-...+.+..+.|+.+....+.+.+..++...-...+.++.+.| ..+-
T Consensus 114 aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~ 193 (280)
T 1oyz_A 114 STAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDI 193 (280)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHH
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCcchhhhhHHHHHHHhCCcCcchhHHhHHHHHHHhcCCHHHHHHHHhcCC
Q 003439 329 AHGFFTTMQQAGIQPDLLTLVSLTSIVAQLNDCRNSRSVHGFIMRRGWFMEDVIIGNAVVDMYAKLGIINSACAVFEGLP 408 (820)
Q Consensus 329 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 408 (820)
.-.+...+ -.++..+....+.+..+.|+......+...+.
T Consensus 194 ~~~L~~~l----------------------------------------~d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~ 233 (280)
T 1oyz_A 194 RDCFVEML----------------------------------------QDKNEEVRIEAIIGLSYRKDKRVLSVLCDELK 233 (280)
T ss_dssp HHHHHHHT----------------------------------------TCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHT
T ss_pred HHHHHHHh----------------------------------------cCCCHHHHHHHHHHHHHhCCHhhHHHHHHHhc
Q ss_pred CCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhc
Q 003439 409 VKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSH 460 (820)
Q Consensus 409 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~ 460 (820)
.++ .-...+.++.+.|. .+++..+.++.. -.++.......+.+..+
T Consensus 234 d~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~---~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 234 KNT--VYDDIIEAAGELGD-KTLLPVLDTMLY---KFDDNEIITSAIDKLKR 279 (280)
T ss_dssp SSS--CCHHHHHHHHHHCC-GGGHHHHHHHHT---TSSCCHHHHHHHHHHTC
T ss_pred Ccc--HHHHHHHHHHhcCc-hhhhHHHHHHHh---cCCCcHHHHHHHHHhhc
No 299
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=35.15 E-value=3.9e+02 Score=27.48 Aligned_cols=55 Identities=5% Similarity=0.027 Sum_probs=28.1
Q ss_pred HHHHHHccCCHHHHHHHHhccCCCC---chHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCC
Q 003439 285 LINMYAKFGMMRHALRVFDQMMERD---VVSWNSIIAAYEQSNDPITAHGFFTTMQQAGIQPD 344 (820)
Q Consensus 285 li~~y~~~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 344 (820)
.+...+..|+++-+..+++.-..++ ....+.| ...+..|+.+ +++.+.+.|..++
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L-~~A~~~g~~~----~v~~Ll~~g~~~~ 74 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPL-HMAARAGHTE----VAKYLLQNKAKVN 74 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHH-HHHHHHTCHH----HHHHHHHHTCCSS
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHhCCCCCC
Confidence 4555667788888877777644332 2222333 3334445543 3444444554443
No 300
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=34.89 E-value=1.5e+02 Score=28.10 Aligned_cols=52 Identities=6% Similarity=-0.027 Sum_probs=27.4
Q ss_pred HHHhCCChhhHHHHHHHHHHcCCCCCcch-------HHHHHHHHH--hcCcchhhhhHHHH
Q 003439 319 AYEQSNDPITAHGFFTTMQQAGIQPDLLT-------LVSLTSIVA--QLNDCRNSRSVHGF 370 (820)
Q Consensus 319 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-------~~~ll~a~~--~~~~~~~a~~i~~~ 370 (820)
..++.|+.+....+++.+.+.|..++... .+.|..|+. ..|..+.++.++..
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 33456777766666666666666555332 233333332 44555555555544
No 301
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=34.72 E-value=1.5e+02 Score=26.18 Aligned_cols=77 Identities=13% Similarity=0.159 Sum_probs=52.8
Q ss_pred HHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHhc--cCCCCcchHHhHHHHhhhcCCcchHHHHHH
Q 003439 602 GMAHNFIQNM-PVRPDAS---IWGALLGACRIHGNMELGAVASDRLFE--VDSENVGYYVLMSNIYANVGKWEGVDEVRS 675 (820)
Q Consensus 602 ~eA~~~~~~m-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 675 (820)
+.+...|... ..+.|.- +|-.++..| +.+..+|+.+.. +.-.-+..|...+..+...|++.+|.++++
T Consensus 47 Erc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~ 120 (164)
T 2wvi_A 47 ERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQ 120 (164)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444455444 2344543 555554443 337778888765 555677789999999999999999999999
Q ss_pred HHHhCCCCc
Q 003439 676 LARDRGLKK 684 (820)
Q Consensus 676 ~m~~~~~~~ 684 (820)
.-.+.+.+|
T Consensus 121 ~Gi~~~A~P 129 (164)
T 2wvi_A 121 EGIQQKAEP 129 (164)
T ss_dssp HHHHTTCBS
T ss_pred HHHHcCCCc
Confidence 988876543
No 302
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=34.58 E-value=97 Score=27.07 Aligned_cols=65 Identities=9% Similarity=0.117 Sum_probs=45.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHhccCCCC---chHHHHHHHHHHhCCC--hhhHHHHHHHHHHcCCCCCcc
Q 003439 282 SNNLINMYAKFGMMRHALRVFDQMMERD---VVSWNSIIAAYEQSND--PITAHGFFTTMQQAGIQPDLL 346 (820)
Q Consensus 282 ~~~li~~y~~~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~pd~~ 346 (820)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 4667888888999999999999987652 3345555566655332 456778888887776555443
No 303
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=34.44 E-value=3.3e+02 Score=27.15 Aligned_cols=15 Identities=0% Similarity=-0.186 Sum_probs=7.4
Q ss_pred HhcCCHHHHHHHHhh
Q 003439 494 GKCGRIDDAMSLFYQ 508 (820)
Q Consensus 494 ~~~g~~~~A~~~~~~ 508 (820)
+..|+.+-+..+++.
T Consensus 181 ~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 181 MEFRNREALDLMMDT 195 (364)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhc
Confidence 344555555555543
No 304
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=34.21 E-value=9.9 Score=24.50 Aligned_cols=13 Identities=31% Similarity=0.577 Sum_probs=10.0
Q ss_pred ecccccCCchhHH
Q 003439 775 KNLRVCGDCHNWT 787 (820)
Q Consensus 775 kn~r~c~dch~~~ 787 (820)
-|-|+|.+||--+
T Consensus 15 ~~YRvC~~CgkPi 27 (44)
T 2lo3_A 15 IQYRVCEKCGKPL 27 (44)
T ss_dssp CCEEECTTTCCEE
T ss_pred ccchhhcccCCcc
Confidence 3679999998543
No 305
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=32.50 E-value=3.2e+02 Score=26.97 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=23.4
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 003439 384 GNAVVDMYAKLGIINSACAVFEGLPVKD 411 (820)
Q Consensus 384 ~~~li~~y~~~g~~~~A~~~f~~~~~~~ 411 (820)
..+++.-|...|+.++|...++++..+.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~ 33 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 33 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 3678888988999999999999987664
No 306
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=30.51 E-value=3.4e+02 Score=27.47 Aligned_cols=28 Identities=11% Similarity=0.196 Sum_probs=20.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHhccCCCC
Q 003439 282 SNNLINMYAKFGMMRHALRVFDQMMERD 309 (820)
Q Consensus 282 ~~~li~~y~~~g~~~~A~~~f~~m~~~d 309 (820)
..++|.-|...|+.++|...++++..|.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~ 84 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 84 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCG
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCch
Confidence 4566777777888888888888876653
No 307
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=29.44 E-value=1.8e+02 Score=26.81 Aligned_cols=14 Identities=14% Similarity=0.121 Sum_probs=6.0
Q ss_pred HhcCCHHHHHHHHh
Q 003439 392 AKLGIINSACAVFE 405 (820)
Q Consensus 392 ~~~g~~~~A~~~f~ 405 (820)
++.|+.+-+.-+++
T Consensus 185 ~~~~~~~~v~~Ll~ 198 (240)
T 3eu9_A 185 VLAGNTTVISLLLE 198 (240)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34444444444443
No 308
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=29.18 E-value=1e+02 Score=26.04 Aligned_cols=62 Identities=16% Similarity=0.234 Sum_probs=42.4
Q ss_pred hHHHHHHHHccCChHHHHHHhcccCCCC---cchHHHHHHHHHhCCC--chHHHHHHHHHhhhCCCCC
Q 003439 82 STKLVNFYANLGDLSFSRHTFDHISYRN---VYTWNSMISVYVRCGR--LSEAVDCFYQFTLTSGLRP 144 (820)
Q Consensus 82 ~~~ll~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~~m~~~~~~p 144 (820)
.+.++.=|...|+.++|.+.++++..|. .+....+..++=+.+. .+....++.. +...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~-L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKS-LWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH-HHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHH-HHHCCCcC
Confidence 4568888999999999999999997763 2344555556555542 3456777777 65555443
No 309
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.91 E-value=2.4e+02 Score=25.74 Aligned_cols=59 Identities=14% Similarity=0.127 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCCCCCHH--HH-----HHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHhHHH
Q 003439 601 LGMAHNFIQNMPVRPDAS--IW-----GALLGACRIHGNMELGAVASDRLFEVDSENVGYYVLMSN 659 (820)
Q Consensus 601 ~~eA~~~~~~m~~~p~~~--~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 659 (820)
++.|+.+++.+..+-|.. .- -..+..|.+.|.+++|.+++++.++-.|.+...-.-|..
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~ 159 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLM 159 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 567777777775333311 11 233456999999999999999999887766554444443
No 310
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=26.22 E-value=2.1e+02 Score=26.98 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=20.1
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 003439 582 KPHLKHYGCMVDLFGRAGHLGMAHNFIQN 610 (820)
Q Consensus 582 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 610 (820)
.++.......+..+.|-|+-++|.++|=+
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 34455555666788888888888887743
No 311
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=25.68 E-value=2.3e+02 Score=28.04 Aligned_cols=28 Identities=11% Similarity=0.196 Sum_probs=22.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHhccCCCC
Q 003439 282 SNNLINMYAKFGMMRHALRVFDQMMERD 309 (820)
Q Consensus 282 ~~~li~~y~~~g~~~~A~~~f~~m~~~d 309 (820)
...+|.-|...|+.++|...++++..|.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~ 33 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 33 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 3567777888899999999998887653
No 312
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=25.25 E-value=3.9e+02 Score=24.34 Aligned_cols=15 Identities=20% Similarity=0.100 Sum_probs=7.0
Q ss_pred HHhcCCHHHHHHHHh
Q 003439 391 YAKLGIINSACAVFE 405 (820)
Q Consensus 391 y~~~g~~~~A~~~f~ 405 (820)
.+..|+.+-...+++
T Consensus 84 A~~~~~~~~~~~Ll~ 98 (237)
T 3b7b_A 84 AAKKGHYEVVQYLLS 98 (237)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHh
Confidence 344455554444444
No 313
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.30 E-value=4.6e+02 Score=30.74 Aligned_cols=27 Identities=7% Similarity=-0.364 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhc
Q 003439 619 IWGALLGACRIHGNMELGAVASDRLFE 645 (820)
Q Consensus 619 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 645 (820)
-|..++..+.+++-++.+.+..+.+++
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 455566666666666666666666664
No 314
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=23.60 E-value=4e+02 Score=23.88 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=30.7
Q ss_pred CcchhHHhHHHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhh
Q 003439 378 MEDVIIGNAVVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEE 440 (820)
Q Consensus 378 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 440 (820)
.++..+....+.+..+.|..+....+.+.+..+|...-...+.++.+.+. .++...+..+..
T Consensus 123 d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 123 DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 34555555666666666654433334444444444444444555555554 344444444433
No 315
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=22.34 E-value=6.5e+02 Score=25.83 Aligned_cols=26 Identities=8% Similarity=-0.038 Sum_probs=19.3
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhcCC
Q 003439 383 IGNAVVDMYAKLGIINSACAVFEGLP 408 (820)
Q Consensus 383 ~~~~li~~y~~~g~~~~A~~~f~~~~ 408 (820)
....|...|.+.|+.++...++....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44567778888888888888777664
No 316
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.81 E-value=2e+02 Score=30.83 Aligned_cols=60 Identities=10% Similarity=0.153 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC--CCCh--hHH-HHHHHHHHHcCCHHHHHHHHHhC
Q 003439 550 ITFVSLLTACSHSGLVSEGQRYFHMMQEEFGI--KPHL--KHY-GCMVDLFGRAGHLGMAHNFIQNM 611 (820)
Q Consensus 550 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~g~--~p~~--~~~-~~li~~~~~~g~~~eA~~~~~~m 611 (820)
..++.++.-|.+.+.+++|..+..... +.. .++. ..| -.++..+.-.+++.+|.+.+..+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 356666777777777777777776542 110 0111 111 22345555667777777766654
No 317
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=21.51 E-value=4.5e+02 Score=23.74 Aligned_cols=15 Identities=7% Similarity=-0.215 Sum_probs=7.1
Q ss_pred HHhcCCHHHHHHHHH
Q 003439 559 CSHSGLVSEGQRYFH 573 (820)
Q Consensus 559 ~~~~g~~~~a~~~~~ 573 (820)
....|+.+-+..+++
T Consensus 217 A~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 217 AKQRKNVWMINHLQE 231 (240)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHH
Confidence 344555554444443
No 318
>1j0t_A MIH, MOLT-inhibiting hormone; alpha-helical protein, hormone/growth factor complex; NMR {Marsupenaeus japonicus} SCOP: a.163.1.1
Probab=21.05 E-value=13 Score=28.22 Aligned_cols=14 Identities=50% Similarity=0.952 Sum_probs=10.9
Q ss_pred ecccccCCchhHHH
Q 003439 775 KNLRVCGDCHNWTK 788 (820)
Q Consensus 775 kn~r~c~dch~~~k 788 (820)
|--|||.|||+...
T Consensus 20 kldrVCdDCyNLyR 33 (78)
T 1j0t_A 20 KVVRVCEDCTNIFR 33 (78)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 34589999999764
No 319
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.96 E-value=1.1e+02 Score=26.82 Aligned_cols=62 Identities=16% Similarity=0.234 Sum_probs=41.9
Q ss_pred hHHHHHHHHccCChHHHHHHhcccCCCC---cchHHHHHHHHHhCCC--chHHHHHHHHHhhhCCCCC
Q 003439 82 STKLVNFYANLGDLSFSRHTFDHISYRN---VYTWNSMISVYVRCGR--LSEAVDCFYQFTLTSGLRP 144 (820)
Q Consensus 82 ~~~ll~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~~m~~~~~~p 144 (820)
.+.+|.=|...|+.++|.+.++++..|. .+....+..++=+.++ .+....++.. +...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~-L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKS-LWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH-HHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHH-HHHCCCcC
Confidence 4568888999999999999999997763 2344555556555432 3456677777 55555443
No 320
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.83 E-value=1.4e+02 Score=27.87 Aligned_cols=76 Identities=16% Similarity=0.183 Sum_probs=52.6
Q ss_pred HHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHhc--cCCCCcchHHhHHHHhhhcCCcchHHHHHH
Q 003439 602 GMAHNFIQNM-PVRPDAS---IWGALLGACRIHGNMELGAVASDRLFE--VDSENVGYYVLMSNIYANVGKWEGVDEVRS 675 (820)
Q Consensus 602 ~eA~~~~~~m-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 675 (820)
+.+...|... ..+.|.- +|-.++.. .+....+|+.+.. +.-.-+..|...+..+...|++++|.++++
T Consensus 101 Erc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 174 (223)
T 4aez_C 101 ERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQ 174 (223)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444445444 2334543 45444432 3567788888875 555677789999999999999999999999
Q ss_pred HHHhCCCC
Q 003439 676 LARDRGLK 683 (820)
Q Consensus 676 ~m~~~~~~ 683 (820)
.-.+++-+
T Consensus 175 ~Gi~~~A~ 182 (223)
T 4aez_C 175 KGKRMKAK 182 (223)
T ss_dssp HHHHHTCB
T ss_pred HHHHcCCc
Confidence 98877553
No 321
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=20.45 E-value=4.4e+02 Score=23.15 Aligned_cols=17 Identities=6% Similarity=-0.040 Sum_probs=9.6
Q ss_pred HHhcCCHHHHHHHHhcC
Q 003439 391 YAKLGIINSACAVFEGL 407 (820)
Q Consensus 391 y~~~g~~~~A~~~f~~~ 407 (820)
.+..|+.+....++..-
T Consensus 12 A~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 12 AANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHHTTCHHHHHHHHTCT
T ss_pred HHHhccHHHHHHHHHcC
Confidence 34556666666666543
No 322
>3tjy_A Effector protein hopab3; type III effector, hoppmal, structural genomics, PSI-biology; HET: MSE; 1.70A {Pseudomonas syringae PV} PDB: 3svi_A
Probab=20.16 E-value=2.9e+02 Score=20.98 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=46.5
Q ss_pred HHHHHHHHhCC-CchHHHHHHHHHhhhCCCCCCccccHHHHHhhcCCcchHHHHHHHHHhCCCCcHHHHHHHHHHhhcC
Q 003439 114 NSMISVYVRCG-RLSEAVDCFYQFTLTSGLRPDFYTFPPVLKACRNLVDGKKIHCSVLKLGFEWDVFVAASLLHMYCRF 191 (820)
Q Consensus 114 ~~li~~~~~~g-~~~~A~~l~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 191 (820)
|.++.-+...| +.......|+.+|....+..+....+.++.-+ -.|...|+..+....+.|=.++.+.
T Consensus 8 n~IVqQlv~aGadLa~~rtmlrn~m~g~~valsr~eq~Il~qHF----------PnM~~~gI~~~seLA~elR~aLrra 76 (94)
T 3tjy_A 8 NRIVQQLVEAGADLANIRTMFRNMLRGEEMILSRAEQNVFLQHF----------PDMLPCGIDRNSELAIALREALRRA 76 (94)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHC----------TTHHHHCCCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHcCCchhhhHHHHHHHHHHC----------cccccccCCCccHHHHHHHHHHHHH
Confidence 66677777766 56667777777777777777777776666543 3467778888877777776665543
No 323
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=20.06 E-value=7.2e+02 Score=29.10 Aligned_cols=126 Identities=12% Similarity=0.014 Sum_probs=73.3
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHhhhhcCCCCCCcccHhhHHHHhhccCChhH
Q 003439 387 VVDMYAKLGIINSACAVFEGLPVKDVISWNTLITGYAQNGLASEAIEVFQMMEECNEINPNQGTYVSILPAYSHVGALRQ 466 (820)
Q Consensus 387 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~ 466 (820)
++..+...|..+-|.++..-++. +...--.+..+|...|++++|...|++.- .|+.++........ .
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA--~gl~~~~~~~~~~~----------~ 882 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQFAVLR----------E 882 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CTTCSSCCSCGGGH----------H
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh--hhcccCcccccchh----------h
Confidence 66777788999988887766664 44333345677889999999999999874 45544432221110 0
Q ss_pred HHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHh----hCCCCCcc----ccchHHHHHHhcC
Q 003439 467 GIKIHARVIKNCL-CFDVFVATCLVDMYGKCGRIDDAMSLFY----QVPRSSSV----PWNAIISCHGIHG 528 (820)
Q Consensus 467 a~~i~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~----~~~~~~~~----~~~~li~~~~~~g 528 (820)
...++. .... .....-|..++..+-+.+.++.+.++-+ .+...|.. .|+.+..+.+..|
T Consensus 883 ~~~ll~---~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 883 FQEIAE---KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHH---HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccC---cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 001111 0000 1122366778888888888777665433 33333333 3666666665443
No 324
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=20.02 E-value=2.9e+02 Score=26.19 Aligned_cols=188 Identities=10% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCC-------ChHHHHhHHHhhhc--CCChHHHHHHHHHH---------HHhC
Q 003439 213 NAMISGYCQSGNAVEALDILDEMRLEGVSM-------DPITVASILPVCAR--SDNILSGLLIHLYI---------VKHG 274 (820)
Q Consensus 213 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-------~~~t~~~ll~a~~~--~~~~~~a~~~~~~~---------~~~g 274 (820)
.+.+...++.|+.+....+++.....+... |..-.+.|..|+.. .|+.+-++.+++.- +..+
T Consensus 14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~ 93 (273)
T 2pnn_A 14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNAS 93 (273)
T ss_dssp HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCC
T ss_pred chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcc
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHhccCCCCchH----------------HHHHHHHHHhCCChhhHHHHHHHHHH
Q 003439 275 LEFNLFVSNNLINMYAKFGMMRHALRVFDQMMERDVVS----------------WNSIIAAYEQSNDPITAHGFFTTMQQ 338 (820)
Q Consensus 275 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~----------------~~~li~~~~~~g~~~~A~~~~~~m~~ 338 (820)
.........+-+...+..|+.+-+..+++.-...+... -.+-+...+..|+. ++++.+.+
T Consensus 94 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~----~~v~~Ll~ 169 (273)
T 2pnn_A 94 YTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL----AIVKFLLQ 169 (273)
T ss_dssp CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCH----HHHHHHHH
T ss_pred cccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCH----HHHHHHHh
Q ss_pred ---cCCCCCcchHH--HHHHHHHhcCcchhh-----hhHHHHHHHhCCcCcc---------hhHHhHHHHHHHhcCCHHH
Q 003439 339 ---AGIQPDLLTLV--SLTSIVAQLNDCRNS-----RSVHGFIMRRGWFMED---------VIIGNAVVDMYAKLGIINS 399 (820)
Q Consensus 339 ---~g~~pd~~t~~--~ll~a~~~~~~~~~a-----~~i~~~~~~~g~~~~~---------~~~~~~li~~y~~~g~~~~ 399 (820)
.|..++..... +.|...+..|+.... .++...+++.| ...+ ..-..+-+..-++.|+.+-
T Consensus 170 ~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~i 248 (273)
T 2pnn_A 170 NSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG-AKLHPTLKLEEITNRKGLTPLALAASSGKIGV 248 (273)
T ss_dssp CSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred cccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh-hhcccccccccccCCCCCCHHHHHHHhChHHH
Q ss_pred HHHHHh
Q 003439 400 ACAVFE 405 (820)
Q Consensus 400 A~~~f~ 405 (820)
+..+++
T Consensus 249 v~~Ll~ 254 (273)
T 2pnn_A 249 LAYILQ 254 (273)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Done!