BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003442
(819 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VY16|CDP1_ARATH Plastid division protein CDP1, chloroplastic OS=Arabidopsis
thaliana GN=CDP1 PE=1 SV=2
Length = 819
Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/757 (60%), Positives = 581/757 (76%), Gaps = 24/757 (3%)
Query: 70 RIVENAQT------TATATVEIPVSCYQIIGVPNQAEKDEIVKSVMDLKRAEIEEGYTMD 123
+V+NA + +T+T+E+PV+CYQ+IGV QAEKDE+VKSV++LK+ + EEGYTM+
Sbjct: 74 HVVDNAPSRTSSLAASTSTIELPVTCYQLIGVSEQAEKDEVVKSVINLKKTDAEEGYTME 133
Query: 124 AFMSRQDVLMDVRDKLLFEPEYAGNIRENIPPKPSLKIQWAWLPAALCLLQEVGEEKLVL 183
A +RQD+LMDVRDKLLFE EYAGN++E I PK L+I WAWLP ALCLLQEVG+EKLVL
Sbjct: 134 AAAARQDLLMDVRDKLLFESEYAGNLKEKIAPKSPLRIPWAWLPGALCLLQEVGQEKLVL 193
Query: 184 DIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKVSL 243
DIGRAAL++ ++KPY HD LSMALAECAIAK AFE N VSQGFEALARAQ L+SKV+L
Sbjct: 194 DIGRAALRNLDSKPYIHDIFLSMALAECAIAKAAFEVNKVSQGFEALARAQSFLKSKVTL 253
Query: 244 GNMPLLSQIEESLEELAPACTLELLGMPHSPENAERRRGAIAALRELIRQGLDVETSCRV 303
G + LL+QIEESLEELAP CTL+LLG+P +PENAERRRGAIAALREL+RQGL VE SC++
Sbjct: 254 GKLALLTQIEESLEELAPPCTLDLLGLPRTPENAERRRGAIAALRELLRQGLSVEASCQI 313
Query: 304 QDWPCFLSRALNRLMAAEVVDLLPWDDLAITRKNKKSLESQNQRVVIDFNCFYIALIAHV 363
QDWPCFLS+A++RL+A E+VDLLPWDDLAITRKNKKSLES NQRVVIDFNCFY+ L+ H+
Sbjct: 314 QDWPCFLSQAISRLLATEIVDLLPWDDLAITRKNKKSLESHNQRVVIDFNCFYMVLLGHI 373
Query: 364 ALGFSSRQIELISKAKTICDCLIASESIDLKFEEAFCLFLLGQGTEAEAVEKLQQLELNS 423
A+GFS +Q E I+KAKTIC+CLIASE +DLKFEEAFC FLL QG+EAEA+EKL+QLE NS
Sbjct: 374 AVGFSGKQNETINKAKTICECLIASEGVDLKFEEAFCSFLLKQGSEAEALEKLKQLESNS 433
Query: 424 NPAMRSSFSGKEKKEISGAKPSVEMWLKDAVLSVFPDTQDCSPSLVNFFKGEKKTPAIKK 483
+ A+R+S GKE + S A PS+E WL ++VL+ FPDT+ CSPSL NFF+ EKK P KK
Sbjct: 434 DSAVRNSILGKESRSTS-ATPSLEAWLMESVLANFPDTRGCSPSLANFFRAEKKYPENKK 492
Query: 484 CKGPPQTPLTMSQRPLSSALASDGRDFEDSHTSIKSSRHLGSAVKQLTPTDLQSPLVASK 543
P +QRPLS+ + SS+HL +AV+QLTPTDLQSP+V++K
Sbjct: 493 MGSPSIMNHKTNQRPLSTT------------QFVNSSQHLYTAVEQLTPTDLQSPVVSAK 540
Query: 544 NSNGNNVSPSSAQLERGLGLQRSKVWESWLAGRNGIERIAFAAVLGCIMFLAVKLSGIRS 603
N++ + S S QL+R LG+ ++K+W+ WL+ + I R++ A+LGC +F ++KLSGIRS
Sbjct: 541 NNDETSASMPSVQLKRNLGVHKNKIWDEWLSQSSLIGRVSVVALLGCTVFFSLKLSGIRS 600
Query: 604 NSVRNLS---SSQQNMQMSSFVRTTDSSLDDSLGRTCIKRHGIASRLTELIKMVKLLFRN 660
++++ S++ + + SF+ T+S + + R+GI + LI M+K+
Sbjct: 601 GRLQSMPISVSARPHSESDSFLWKTESG-NFRKNLDSVNRNGIVGNIKVLIDMLKMHCGE 659
Query: 661 TSDTLYSQSSCLPA-SLSTSNIAVTQRPMPLEEAEALVKQWQAIKAEALGPNHEVHSLSE 719
D LY +SS A SLS S + +RPM EEAE LV+QW+ +KAEALGP H+V+SLSE
Sbjct: 660 HPDALYLKSSGQSATSLSHSASELHKRPMDTEEAEELVRQWENVKAEALGPTHQVYSLSE 719
Query: 720 ALDESMLVQWEALADAAKARSCYWRFVLLQLTIVQADIISHGGVGEIAEIEAVLEEAAEL 779
LDESMLVQW+ LA A+A+SCYWRFVLL L ++QA I G GE AEIEA+LEEAAEL
Sbjct: 720 VLDESMLVQWQTLAQTAEAKSCYWRFVLLHLEVLQAHIFEDGIAGEAAEIEALLEEAAEL 779
Query: 780 VDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKGDIQ 816
VDESQPKN YYS+YKIRY+L+K++DG W+FC+ DIQ
Sbjct: 780 VDESQPKNAKYYSTYKIRYILKKQEDGLWKFCQSDIQ 816
>sp|Q9FIG9|ARC6_ARATH Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6,
chloroplastic OS=Arabidopsis thaliana GN=ARC6 PE=1 SV=1
Length = 801
Score = 142 bits (359), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 193/780 (24%), Positives = 322/780 (41%), Gaps = 112/780 (14%)
Query: 83 VEIPVSCYQIIGVPNQAEKDEIVKSVMDLKRAEIEEGYTMDAFMSRQDVLMDVRDKL--- 139
V IP+ YQ++G D I ++ + G++ DA +SR+ +L + L
Sbjct: 84 VPIPIDFYQVLGAQTHFLTDGIRRAFEARVSKPPQFGFSDDALISRRQILQAACETLSNP 143
Query: 140 LFEPEYAGNIRENIPPKPSLKIQWAWLPAALCLLQEVGEEKLVLDIGRAALQHPNAKPYA 199
EY + ++ + W +P ALC+LQE GE ++VL +G A L+ K +
Sbjct: 144 RSRREYNEGLLDDEEATVITDVPWDKVPGALCVLQEGGETEIVLRVGEALLKERLPKSFK 203
Query: 200 HDFLLSMALAECAIAK--VAFEKNNVSQGFEALARAQCLLRSKVSLGNMP-LLSQIEESL 256
D +L MALA +++ +A + + G+E + A LL+ + + P L +QI+E+L
Sbjct: 204 QDVVLVMALAFLDVSRDAMALDPPDFITGYEFVEEALKLLQEEGASSLAPDLRAQIDETL 263
Query: 257 EELAPACTLELLGMPHSPENAERRRGAIAALRELIRQGLDVETSCRVQDWP--CFLSRAL 314
EE+ P LELLG+P + A +R ++ +R ++ S V F++ A
Sbjct: 264 EEITPRYVLELLGLPLGDDYAAKRLNGLSGVRNILWSVGGGGASALVGGLTREKFMNEAF 323
Query: 315 NRLMAAEVVDLLPWDDLAITRKNKKSLESQNQRVVIDFNCFYIALIAHVALGF------- 367
R+ AAE VDL + + ES F + +AL A VA F
Sbjct: 324 LRMTAAEQVDLF------VATPSNIPAES--------FEVYEVAL-ALVAQAFIGKKPHL 368
Query: 368 ---SSRQIELISKAKTICDCLIA-------SESIDLKFEEAFCLFLLGQGTEAEAVEKLQ 417
+ +Q + + +AK + + A + ID E C L+G+ E L
Sbjct: 369 LQDADKQFQQLQQAKVMAMEIPAMLYDTRNNWEIDFGLERGLCALLIGKVDECRMWLGLD 428
Query: 418 QLELN-SNPAM----RSSFSGKEKKEISGAKPSVEMWLKDAVLSVFPDTQDCSPSLVNFF 472
+ NPA+ + + + ++ G +E WL V F DT+D L +++
Sbjct: 429 SEDSQYRNPAIVEFVLENSNRDDNDDLPGLCKLLETWLAGVVFPRFRDTKDKKFKLGDYY 488
Query: 473 KGEKKTPAIKKCKGPPQTPLTM--------SQRPLSSALASDGRDFEDSHTSIKSSRHLG 524
+++ + +PL ++ +SA+ + + F +T S+
Sbjct: 489 DDPMVLSYLERVEVVQGSPLAAAAAMARIGAEHVKASAMQALQKVFPSRYTDRNSAE--- 545
Query: 525 SAVKQLTPTDLQSPLVASKNSNGNNVSPSSAQLERGLGLQRSKVWESWLAGRNGIERIAF 584
P D+Q V S + GNNV GR+G
Sbjct: 546 -------PKDVQE-TVFSVDPVGNNV------------------------GRDGEP---- 569
Query: 585 AAVLGCIMFLAVKLSGIRSNSVRNLSSSQQNMQMSSFVRTT-DSSLDDSLGRTCIK--RH 641
G + AV+ S N N + + + SS TT + S+ D L +K
Sbjct: 570 ----GVFIAEAVRPS---ENFETNDYAIRAGVSESSVDETTVEMSVADMLKEASVKILAA 622
Query: 642 GIASRLTELIKMVKLLFRNTSDTLYSQSSCLPASLST--SNIAVTQRPMPLEE---AEAL 696
G+A L L L ++S S + + ++T S A +P + AE +
Sbjct: 623 GVAIGLISLFSQKYFLKSSSSFQRKDMVSSMESDVATIGSVRADDSEALPRMDARTAENI 682
Query: 697 VKQWQAIKAEALGPNHEVHSLSEALDESMLVQWEALADAAKARSCYWRFVLLQLTIVQAD 756
V +WQ IK+ A GP+H + L E LD ML W A + + LL+L++ D
Sbjct: 683 VSKWQKIKSLAFGPDHRIEMLPEVLDGRMLKIWTDRAAETAQLGLVYDYTLLKLSV---D 739
Query: 757 IISHGGVGEIAEIEAVLEEAAELVDESQPK-NPNYYSSYKIRYVLRKKDDGTWRFCKGDI 815
++ G A +EA LEE+A L D P+ N +Y RY + G W+ +G +
Sbjct: 740 SVTVSADGTRALVEATLEESACLSDLVHPENNATDVRTYTTRYEVFWSKSG-WKITEGSV 798
>sp|Q0SNU2|SYA_BORAP Alanine--tRNA ligase OS=Borrelia afzelii (strain PKo) GN=alaS PE=3
SV=1
Length = 594
Score = 37.0 bits (84), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 542 SKNSNGNNVSPSSAQLERGLGLQRSKVWESWLAGRNGI-ERIAFAAVLGCIMFLAVKLSG 600
+K+ NGN + ++ G+GL+R+ ++L G++ + + AF ++ I F++ K+ G
Sbjct: 211 NKDENGNYMELDRKCVDTGMGLERTI---AFLQGKSSVYDTDAFMPIIKRIEFISGKIYG 267
Query: 601 IRSNSVRNLSSSQQNMQMSSFVRTTDSSLDDS-LGRTCI------------KRHGIASR- 646
+ + R + +++ + F+ S + S LG+ + K+ GI S
Sbjct: 268 QKEDDDRCIRIISDHIKAACFILADSSGVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHF 327
Query: 647 LTELIKMVKLLFRNTSDTLYSQSSCLPASLST 678
L +L+ V+ ++R+ + L + + LST
Sbjct: 328 LADLVDSVETIYRSFYNELTEKKDFIKKELST 359
>sp|A3CT03|RS3_METMJ 30S ribosomal protein S3 OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=rps3 PE=3 SV=1
Length = 234
Score = 35.0 bits (79), Expect = 2.7, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 524 GSAVKQLTPT-----DLQSPLVASKNSNGNNVSPSSAQLERGLGLQRSKVWESWLAGRNG 578
G V+QLT D++SP V + N + L+R W AG +
Sbjct: 59 GKQVRQLTQDLATDYDIESPQVEVQQVQNPNFNAQIMAERLANALERG--WYFRKAGSST 116
Query: 579 IERIAFAAVLGCIMFLAVKLSGIRSNS 605
I RI + LGC + +A KL+G RS +
Sbjct: 117 IRRIMESGALGCEVIVAGKLTGSRSRT 143
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 278,052,411
Number of Sequences: 539616
Number of extensions: 11021999
Number of successful extensions: 31904
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 31891
Number of HSP's gapped (non-prelim): 25
length of query: 819
length of database: 191,569,459
effective HSP length: 126
effective length of query: 693
effective length of database: 123,577,843
effective search space: 85639445199
effective search space used: 85639445199
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)