Query 003442
Match_columns 819
No_of_seqs 109 out of 117
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 23:29:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13355 DUF4101: Protein of u 100.0 1.9E-35 4.2E-40 277.5 15.1 116 693-812 1-117 (117)
2 PF00226 DnaJ: DnaJ domain; I 97.6 0.00017 3.8E-09 60.3 6.3 59 88-146 1-64 (64)
3 PRK14292 chaperone protein Dna 97.3 0.00032 6.9E-09 78.4 6.0 61 86-147 1-65 (371)
4 smart00271 DnaJ DnaJ molecular 97.2 0.00085 1.8E-08 55.1 6.3 54 88-141 2-57 (60)
5 cd06257 DnaJ DnaJ domain or J- 97.2 0.00094 2E-08 53.8 6.0 54 88-141 1-55 (55)
6 PRK14298 chaperone protein Dna 97.0 0.00089 1.9E-08 75.2 5.7 64 83-147 1-68 (377)
7 PRK14293 chaperone protein Dna 96.8 0.0013 2.9E-08 73.7 5.4 61 86-147 2-66 (374)
8 COG0484 DnaJ DnaJ-class molecu 96.8 0.0017 3.6E-08 72.9 6.0 62 86-148 3-69 (371)
9 PRK14295 chaperone protein Dna 96.8 0.0018 3.9E-08 73.1 6.2 65 83-147 5-73 (389)
10 PRK14284 chaperone protein Dna 96.7 0.0023 5.1E-08 72.2 6.2 61 87-147 1-65 (391)
11 PRK14285 chaperone protein Dna 96.7 0.0026 5.7E-08 71.2 6.0 62 86-147 2-67 (365)
12 PRK14299 chaperone protein Dna 96.6 0.0027 5.9E-08 68.9 5.9 60 87-147 4-67 (291)
13 PRK14288 chaperone protein Dna 96.6 0.0027 5.8E-08 71.2 6.0 62 86-147 2-67 (369)
14 PRK14286 chaperone protein Dna 96.6 0.0033 7.1E-08 70.6 6.0 61 87-147 4-68 (372)
15 PRK14282 chaperone protein Dna 96.6 0.0034 7.4E-08 70.3 6.1 61 87-147 4-69 (369)
16 PRK14300 chaperone protein Dna 96.5 0.0028 6E-08 71.2 5.1 60 87-147 3-66 (372)
17 PRK14281 chaperone protein Dna 96.5 0.0034 7.4E-08 71.0 5.8 61 87-147 3-67 (397)
18 PRK14297 chaperone protein Dna 96.5 0.0036 7.7E-08 70.4 5.9 61 87-147 4-68 (380)
19 PRK14278 chaperone protein Dna 96.5 0.0037 8E-08 70.3 5.9 60 87-147 3-66 (378)
20 TIGR02349 DnaJ_bact chaperone 96.5 0.0032 7E-08 69.9 5.3 59 88-147 1-63 (354)
21 PRK14290 chaperone protein Dna 96.5 0.0036 7.8E-08 70.0 5.6 61 86-147 2-68 (365)
22 PRK14294 chaperone protein Dna 96.4 0.0043 9.4E-08 69.4 6.0 61 87-147 4-68 (366)
23 PRK14277 chaperone protein Dna 96.4 0.005 1.1E-07 69.5 6.3 62 86-147 4-69 (386)
24 PRK14301 chaperone protein Dna 96.4 0.0047 1E-07 69.4 5.8 61 87-147 4-68 (373)
25 PRK14276 chaperone protein Dna 96.3 0.0046 1E-07 69.6 5.5 60 87-147 4-67 (380)
26 PRK14279 chaperone protein Dna 96.3 0.0054 1.2E-07 69.4 6.0 62 86-147 8-73 (392)
27 PRK10767 chaperone protein Dna 96.2 0.007 1.5E-07 67.8 6.2 62 86-147 3-68 (371)
28 PRK14296 chaperone protein Dna 96.2 0.0064 1.4E-07 68.3 5.4 60 87-147 4-67 (372)
29 PRK14287 chaperone protein Dna 96.1 0.0095 2.1E-07 66.9 6.2 60 87-147 4-67 (371)
30 PRK14280 chaperone protein Dna 96.1 0.0071 1.5E-07 68.0 5.1 60 87-147 4-67 (376)
31 PRK14291 chaperone protein Dna 96.0 0.0091 2E-07 67.3 5.7 60 87-147 3-66 (382)
32 KOG0715 Molecular chaperone (D 95.7 0.013 2.9E-07 63.9 5.4 63 88-151 44-110 (288)
33 PRK10266 curved DNA-binding pr 95.7 0.013 2.7E-07 64.2 4.9 60 87-147 4-67 (306)
34 PTZ00037 DnaJ_C chaperone prot 95.6 0.016 3.5E-07 66.3 5.8 63 80-147 22-88 (421)
35 PRK14289 chaperone protein Dna 95.5 0.022 4.8E-07 64.3 6.0 61 86-147 4-69 (386)
36 PRK14283 chaperone protein Dna 95.5 0.021 4.6E-07 64.3 5.8 61 86-147 4-68 (378)
37 PRK03578 hscB co-chaperone Hsc 95.4 0.22 4.7E-06 50.9 12.2 66 84-149 3-79 (176)
38 TIGR03835 termin_org_DnaJ term 95.2 0.029 6.4E-07 67.8 6.2 61 87-148 2-66 (871)
39 PRK05014 hscB co-chaperone Hsc 95.2 0.54 1.2E-05 47.8 14.4 62 88-149 2-74 (171)
40 KOG0713 Molecular chaperone (D 94.7 0.051 1.1E-06 60.3 5.7 61 88-148 17-81 (336)
41 PRK00294 hscB co-chaperone Hsc 94.2 0.62 1.3E-05 47.6 12.1 63 87-149 4-77 (173)
42 PTZ00100 DnaJ chaperone protei 94.2 0.078 1.7E-06 51.0 5.2 50 87-140 65-115 (116)
43 COG2214 CbpA DnaJ-class molecu 94.2 0.088 1.9E-06 51.9 5.8 61 87-147 6-71 (237)
44 PF04280 Tim44: Tim44-like dom 94.0 0.87 1.9E-05 43.9 12.1 116 691-813 22-145 (147)
45 PRK09430 djlA Dna-J like membr 93.6 0.11 2.5E-06 56.1 5.7 56 87-142 200-263 (267)
46 PTZ00341 Ring-infected erythro 92.8 0.2 4.3E-06 62.3 6.6 67 81-148 567-637 (1136)
47 KOG0691 Molecular chaperone (D 92.7 0.18 3.9E-06 55.5 5.6 88 86-176 4-109 (296)
48 PRK01356 hscB co-chaperone Hsc 92.0 0.36 7.8E-06 48.9 6.5 63 87-149 2-73 (166)
49 KOG0717 Molecular chaperone (D 91.4 0.3 6.5E-06 56.3 5.7 109 88-215 9-132 (508)
50 KOG0568 Molecular chaperone (D 91.2 0.21 4.6E-06 53.0 3.9 55 86-141 46-101 (342)
51 PHA03102 Small T antigen; Revi 90.6 0.49 1.1E-05 47.6 5.7 56 88-147 6-67 (153)
52 KOG0716 Molecular chaperone (D 90.1 0.41 8.9E-06 52.0 5.0 61 86-147 30-95 (279)
53 PF12870 Lumazine_bd: Lumazine 88.3 1.4 3.1E-05 39.3 6.5 34 764-811 78-111 (111)
54 PRK01773 hscB co-chaperone Hsc 88.0 6.8 0.00015 40.2 11.8 62 87-149 2-75 (173)
55 KOG0718 Molecular chaperone (D 87.9 0.86 1.9E-05 52.8 5.8 63 84-146 5-75 (546)
56 KOG0624 dsRNA-activated protei 86.9 0.74 1.6E-05 51.9 4.4 62 86-147 393-461 (504)
57 PF12883 DUF3828: Protein of u 86.6 0.39 8.5E-06 45.8 1.9 87 708-813 20-116 (120)
58 KOG0712 Molecular chaperone (D 85.7 1.3 2.8E-05 49.7 5.6 57 86-147 3-65 (337)
59 KOG0720 Molecular chaperone (D 84.0 0.98 2.1E-05 52.3 3.8 81 68-149 214-300 (490)
60 PRK13616 lipoprotein LpqB; Pro 81.9 2.1 4.5E-05 51.4 5.6 100 691-812 54-155 (591)
61 PRK13613 lipoprotein LpqB; Pro 77.2 9.5 0.00021 46.1 9.1 106 691-812 60-167 (599)
62 COG4319 Ketosteroid isomerase 76.7 8.1 0.00018 38.5 6.9 45 763-812 82-126 (137)
63 PRK13614 lipoprotein LpqB; Pro 76.1 8.3 0.00018 46.4 8.1 101 692-812 61-161 (573)
64 KOG0721 Molecular chaperone (D 75.6 5 0.00011 42.8 5.4 59 84-142 96-155 (230)
65 KOG0714 Molecular chaperone (D 75.4 2.8 6.2E-05 43.5 3.7 61 87-148 3-69 (306)
66 PF05494 Tol_Tol_Ttg2: Toluene 75.2 5.8 0.00013 39.6 5.7 58 743-815 80-137 (170)
67 PRK13615 lipoprotein LpqB; Pro 74.6 9.2 0.0002 45.9 8.0 98 692-812 52-151 (557)
68 KOG0719 Molecular chaperone (D 72.6 5.7 0.00012 42.8 5.0 60 88-147 15-80 (264)
69 PF13424 TPR_12: Tetratricopep 72.0 9.9 0.00022 32.2 5.6 64 172-238 14-77 (78)
70 PF13446 RPT: A repeated domai 70.6 7.8 0.00017 32.7 4.6 44 88-136 6-49 (62)
71 PF13577 SnoaL_4: SnoaL-like d 70.1 24 0.00052 32.1 8.0 59 745-812 67-125 (127)
72 TIGR02246 conserved hypothetic 69.7 31 0.00067 31.4 8.7 18 795-813 102-121 (128)
73 PHA02624 large T antigen; Prov 69.5 6.7 0.00015 47.5 5.3 50 88-141 12-64 (647)
74 TIGR00984 3a0801s03tim44 mitoc 68.9 38 0.00082 39.0 10.8 100 711-812 264-378 (378)
75 PF13474 SnoaL_3: SnoaL-like d 58.9 75 0.0016 28.4 9.0 58 741-813 57-114 (121)
76 TIGR03481 HpnM hopanoid biosyn 56.5 23 0.00051 36.9 5.9 55 743-815 106-160 (198)
77 KOG4162 Predicted calmodulin-b 53.2 2.8E+02 0.0061 34.9 14.7 159 159-321 390-578 (799)
78 PF12893 Lumazine_bd_2: Putati 52.2 38 0.00082 31.5 6.0 15 797-812 98-112 (116)
79 PF14534 DUF4440: Domain of un 50.2 48 0.0011 28.7 6.1 40 764-810 68-107 (107)
80 KOG0722 Molecular chaperone (D 49.7 9.8 0.00021 41.6 1.9 53 88-141 34-87 (329)
81 PF13432 TPR_16: Tetratricopep 48.1 90 0.002 25.4 7.1 55 172-236 6-60 (65)
82 PRK05685 fliS flagellar protei 44.6 78 0.0017 30.9 7.1 88 206-295 34-124 (132)
83 CHL00033 ycf3 photosystem I as 41.3 1.8E+02 0.0038 28.5 9.1 67 171-240 80-146 (168)
84 PF14559 TPR_19: Tetratricopep 40.0 41 0.0009 27.4 3.8 38 376-413 8-47 (68)
85 PRK15174 Vi polysaccharide exp 39.3 5E+02 0.011 31.8 14.2 51 176-236 89-139 (656)
86 PRK15117 ABC transporter perip 38.7 84 0.0018 33.2 6.7 56 745-815 112-168 (211)
87 KOG3874 Uncharacterized conser 36.9 29 0.00063 40.0 3.1 61 26-91 156-216 (504)
88 TIGR00208 fliS flagellar biosy 35.7 1.8E+02 0.004 28.2 8.0 84 206-291 30-114 (124)
89 TIGR02795 tol_pal_ybgF tol-pal 31.8 1.4E+02 0.0031 26.2 6.2 59 171-236 47-105 (119)
90 PF05223 MecA_N: NTF2-like N-t 31.6 2.1E+02 0.0046 27.0 7.6 101 690-811 4-104 (118)
91 PF07719 TPR_2: Tetratricopept 31.4 1E+02 0.0022 21.7 4.3 29 208-236 2-30 (34)
92 PRK10069 3-phenylpropionate di 31.3 2.5E+02 0.0053 28.8 8.6 47 764-816 122-168 (183)
93 PF13374 TPR_10: Tetratricopep 30.9 45 0.00098 24.4 2.4 22 691-712 19-40 (42)
94 PF00866 Ring_hydroxyl_B: Ring 30.6 2.3E+02 0.0051 27.8 8.0 78 729-816 54-136 (145)
95 PF13371 TPR_9: Tetratricopept 28.4 1.7E+02 0.0037 24.2 5.7 56 172-237 4-59 (73)
96 PRK11447 cellulose synthase su 28.0 5.9E+02 0.013 33.3 13.0 40 374-413 284-325 (1157)
97 PF00515 TPR_1: Tetratricopept 27.8 1.3E+02 0.0027 21.5 4.3 31 207-237 1-31 (34)
98 TIGR03231 anthran_1_2_B anthra 27.2 2.2E+02 0.0049 28.6 7.3 22 794-816 119-140 (155)
99 PF13414 TPR_11: TPR repeat; P 27.1 98 0.0021 25.4 4.1 56 172-236 12-67 (69)
100 TIGR02917 PEP_TPR_lipo putativ 27.0 8.1E+02 0.018 29.1 13.0 38 376-413 244-283 (899)
101 cd00667 ring_hydroxylating_dio 26.5 3.7E+02 0.008 26.2 8.6 47 764-816 100-146 (160)
102 PF13432 TPR_16: Tetratricopep 26.2 1.3E+02 0.0027 24.5 4.5 39 375-413 13-53 (65)
103 TIGR03232 benzo_1_2_benB benzo 26.2 3.6E+02 0.0078 27.1 8.5 21 795-816 120-140 (155)
104 PF13176 TPR_7: Tetratricopept 25.9 1.1E+02 0.0025 22.7 3.8 29 209-237 1-29 (36)
105 COG2956 Predicted N-acetylgluc 25.0 1.5E+02 0.0033 33.9 6.1 61 170-235 148-208 (389)
106 KOG0550 Molecular chaperone (D 24.6 80 0.0017 37.1 3.9 63 84-146 370-437 (486)
107 COG1516 FliS Flagellin-specifi 23.6 2.2E+02 0.0047 28.5 6.2 89 206-295 30-120 (132)
108 PRK15359 type III secretion sy 22.8 2.4E+02 0.0052 27.3 6.4 75 173-259 68-142 (144)
109 PLN03088 SGT1, suppressor of 21.5 2.2E+02 0.0047 32.1 6.6 57 172-238 45-101 (356)
110 PRK02603 photosystem I assembl 21.4 4.5E+02 0.0097 25.9 8.1 70 171-243 80-149 (172)
111 cd00189 TPR Tetratricopeptide 21.0 2.6E+02 0.0057 21.8 5.4 55 173-237 10-64 (100)
112 cd05804 StaR_like StaR_like; a 20.6 1.8E+02 0.0039 31.4 5.6 57 172-238 123-179 (355)
113 KOG0723 Molecular chaperone (D 20.5 96 0.0021 30.1 3.0 46 91-140 60-106 (112)
114 TIGR02552 LcrH_SycD type III s 20.3 3E+02 0.0066 25.2 6.3 74 173-258 61-134 (135)
115 PRK10049 pgaA outer membrane p 20.1 1.7E+03 0.038 27.7 17.1 38 376-413 410-449 (765)
No 1
>PF13355 DUF4101: Protein of unknown function (DUF4101)
Probab=100.00 E-value=1.9e-35 Score=277.50 Aligned_cols=116 Identities=40% Similarity=0.737 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHhcCCCccccchhhhhhhhHHHHHHHHHHHHHHCCceEEEeeceeEEEEEEeeccCCCCceeEEEEE
Q 003442 693 AEALVKQWQAIKAEALGPNHEVHSLSEALDESMLVQWEALADAAKARSCYWRFVLLQLTIVQADIISHGGVGEIAEIEAV 772 (819)
Q Consensus 693 Ae~lV~~Wq~aKa~AlGp~H~i~~L~eIL~g~mLs~W~~~A~~l~~~~~Yw~Y~l~~L~I~sV~v~~d~~~~~~A~VeA~ 772 (819)
|++||++||++||+||||+|++++|++||+|+||++|++++++++++||||+|+ |+++|++|+++.+ +|++|+|+|+
T Consensus 1 A~~lv~~Wl~~Ka~alg~~~~~~~L~~vl~g~ll~~w~~~a~~~~~~g~y~~y~-~~~~I~sv~~~~~--~~~ra~v~a~ 77 (117)
T PF13355_consen 1 AEQLVQRWLSAKAQALGPPHDIDSLSEVLTGPLLSQWQDRAQWLKANGWYWEYD-HKLKIDSVEVFSD--SPNRATVEAT 77 (117)
T ss_pred CHHHHHHHHHHHHHHhCCCcchhHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEe-eeeEEEEEEEcCC--CCCeEEEEEE
Confidence 789999999999999999999999999999999999999999999999999999 9999999999854 5899999999
Q ss_pred EEEeEEecccCCCCC-CCCccceEEEEEEEEcCCCceeEee
Q 003442 773 LEEAAELVDESQPKN-PNYYSSYKIRYVLRKKDDGTWRFCK 812 (819)
Q Consensus 773 V~E~a~Lyd~~~~~~-~Sy~~ty~vRY~L~r~~dG~WKI~~ 812 (819)
|+|+++||++|++.+ +||++||+|||+|+|++ |+|||+|
T Consensus 78 v~E~~~l~~~g~~~~~~s~~~~~~vrY~L~r~~-~~WkI~d 117 (117)
T PF13355_consen 78 VTESAQLYDNGQPDNNPSYDSTLRVRYELVRQN-GQWKITD 117 (117)
T ss_pred EEEEEEEEeCCccccCCCCCCcEEEEEEEEEcC-CEEEecC
Confidence 999999999999885 69999999999999985 6899986
No 2
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=97.58 E-value=0.00017 Score=60.27 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=49.0
Q ss_pred cchhccCCCCCCChHHHHHHHHHHhhhh-hcc-CCCHHHHHHHHHHHHHHHHhhcC---chhhh
Q 003442 88 SCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEE-GYTMDAFMSRQDVLMDVRDKLLF---EPEYA 146 (819)
Q Consensus 88 D~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~-GyS~~al~aR~~LL~~A~d~L~~---r~eY~ 146 (819)
|||+||||++.++.++|+++|..+...- |+. +-.......+-+.|..|++.|.+ |+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999998877766 665 33335688888999999999987 56775
No 3
>PRK14292 chaperone protein DnaJ; Provisional
Probab=97.30 E-value=0.00032 Score=78.40 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=50.4
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
|+|||+||||++.|+.++|.+||..+..+- |+..-+ ..-..|-+.|.+||+.|.+ |+.||.
T Consensus 1 ~~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~-~~a~~~~~~i~~Ay~vL~d~~~r~~yd~ 65 (371)
T PRK14292 1 MMDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-KGAAEKFAQINEAYAVLSDAEKRAHYDR 65 (371)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-hhHHHHHHHHHHHHHHhcchhhhhhHhh
Confidence 689999999999999999999998776665 666543 3456778899999999997 778885
No 4
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=97.23 E-value=0.00085 Score=55.13 Aligned_cols=54 Identities=22% Similarity=0.248 Sum_probs=46.1
Q ss_pred cchhccCCCCCCChHHHHHHHHHHhhhh-hccCCC-HHHHHHHHHHHHHHHHhhcC
Q 003442 88 SCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYT-MDAFMSRQDVLMDVRDKLLF 141 (819)
Q Consensus 88 D~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS-~~al~aR~~LL~~A~d~L~~ 141 (819)
|||+||||++.++.++|.++|..+...- |+.+-. ......+-+.|..||+.|.+
T Consensus 2 ~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~ 57 (60)
T smart00271 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSD 57 (60)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcC
Confidence 8999999999999999999997776654 777664 66777788899999999876
No 5
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=97.18 E-value=0.00094 Score=53.81 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=44.3
Q ss_pred cchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC
Q 003442 88 SCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF 141 (819)
Q Consensus 88 D~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~ 141 (819)
|||+||||++.++.++|.++|..+...- |+.+=+......+-+.|..||+.|.+
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999997776554 76654446667788889999998854
No 6
>PRK14298 chaperone protein DnaJ; Provisional
Probab=96.99 E-value=0.00089 Score=75.24 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=50.4
Q ss_pred eeccCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 83 VEIPVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 83 m~iPlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
|+.+-|||.||||++.|+.++|.+||..+-.+- |+.. .......+-+.|.+||+.|.+ |..||.
T Consensus 1 ~~~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~-~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~ 68 (377)
T PRK14298 1 MATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKN-KEPDAEEKFKEISEAYAVLSDAEKRAQYDR 68 (377)
T ss_pred CCCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCcccc-CChhHHHHHHHHHHHHHHhcchHhhhhhhh
Confidence 566789999999999999999999997764443 5552 223345677889999999998 778885
No 7
>PRK14293 chaperone protein DnaJ; Provisional
Probab=96.84 E-value=0.0013 Score=73.71 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=49.0
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhh-hhccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRA-EIEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~-~p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
+.|||+||||++.++.++|.+||..+..+ -|+.- +......+-+.|.+||+.|.+ |..||.
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~-~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~ 66 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVN-KEPGAEDRFKEINRAYEVLSDPETRARYDQ 66 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCcCHHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 67999999999999999999999777555 36652 223345677899999999997 778884
No 8
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0017 Score=72.87 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=48.9
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCC-CHHHHHHHHHHHHHHHHhhcC---chhhhcc
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGY-TMDAFMSRQDVLMDVRDKLLF---EPEYAGN 148 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~Gy-S~~al~aR~~LL~~A~d~L~~---r~eY~~~ 148 (819)
+-|||+||||+..|+.++|.+||..|-.+= |+.-. +.+|=..-++ +.+||+.|.| |..||+-
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKE-I~eAYEVLsD~eKRa~YD~f 69 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKE-INEAYEVLSDPEKRAAYDQF 69 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH-HHHHHHHhCCHHHHHHhhcc
Confidence 469999999999999999999997665444 77666 5666555555 5799999998 7888854
No 9
>PRK14295 chaperone protein DnaJ; Provisional
Probab=96.81 E-value=0.0018 Score=73.13 Aligned_cols=65 Identities=25% Similarity=0.261 Sum_probs=51.9
Q ss_pred eeccCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 83 VEIPVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 83 m~iPlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
|-+..|||.||||++.|+.++|.+||..+-.+- |+..-.......+-+.|.+||+.|.+ |+.||.
T Consensus 5 ~~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 5 DYIEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred hccccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 335679999999999999999999997775544 66544344456788899999999998 678886
No 10
>PRK14284 chaperone protein DnaJ; Provisional
Probab=96.72 E-value=0.0023 Score=72.16 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=49.6
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
.|||+||||++.|+.++|.+||..+..+- |+.--+......+-+.+.+||+.|.+ |+.||.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 65 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDR 65 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 49999999999999999999998886664 66544444456677889999999998 788885
No 11
>PRK14285 chaperone protein DnaJ; Provisional
Probab=96.66 E-value=0.0026 Score=71.18 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=50.4
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
..|||+||||++.|+.++|.+||..+..+- |+..-....-..+=+.+.+||+.|.+ |..|+.
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~ 67 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDR 67 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHh
Confidence 359999999999999999999998886655 77654334445678889999999998 677874
No 12
>PRK14299 chaperone protein DnaJ; Provisional
Probab=96.65 E-value=0.0027 Score=68.94 Aligned_cols=60 Identities=23% Similarity=0.269 Sum_probs=48.2
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
.|||+||||++.|+.++|.+||..+..+- |+..-. .....+-+.+.+||+.|.+ |+.||.
T Consensus 4 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~kr~~yD~ 67 (291)
T PRK14299 4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-PGAEEKFKEINEAYTVLSDPEKRRIYDT 67 (291)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 59999999999999999999997775544 655322 3346677889999999998 778885
No 13
>PRK14288 chaperone protein DnaJ; Provisional
Probab=96.64 E-value=0.0027 Score=71.22 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=47.3
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
..|||.||||++.|+.++|.+||..+-.+- |+.-=.......|=+.|.+||+.|.+ |+.||.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~ 67 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDR 67 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 479999999999999999999997774333 55411012235577789999999998 788985
No 14
>PRK14286 chaperone protein DnaJ; Provisional
Probab=96.57 E-value=0.0033 Score=70.62 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=48.2
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
.|||.||||++.|+.++|.+||..+-.+- |+..-.......+-+.+.+||+.|.+ |+.||.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 68 (372)
T PRK14286 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQ 68 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 49999999999999999999998775444 66533223345677889999999998 778884
No 15
>PRK14282 chaperone protein DnaJ; Provisional
Probab=96.57 E-value=0.0034 Score=70.32 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=48.0
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCH-HHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTM-DAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~-~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
-|||+||||++.|+.++|.+||..+..+- |+.--.. .....+-+.+.+||+.|.+ |+.||.
T Consensus 4 ~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 69 (369)
T PRK14282 4 KDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDR 69 (369)
T ss_pred CChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhh
Confidence 59999999999999999999998776554 5553221 2345677789999999998 788985
No 16
>PRK14300 chaperone protein DnaJ; Provisional
Probab=96.52 E-value=0.0028 Score=71.17 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=47.0
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
-|||+||||++.|+.++|.+||..+..+- |+. +....-..+-+.|..||+.|.+ |..||.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~-~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~ 66 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDT-TDAKDAEKKFKEINAAYDVLKDEQKRAAYDR 66 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCC-CCCcCHHHHHHHHHHHHHHhhhHhHhhHHHh
Confidence 59999999999999999999997774443 554 2222344577899999999987 778885
No 17
>PRK14281 chaperone protein DnaJ; Provisional
Probab=96.52 E-value=0.0034 Score=71.02 Aligned_cols=61 Identities=20% Similarity=0.219 Sum_probs=49.5
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
-|||.||||++.|+.++|.+||..+..+- |+..-+......+-+.|.+||+.|.+ |+.||.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 67 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQ 67 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 59999999999999999999998775554 66654434455677899999999997 778884
No 18
>PRK14297 chaperone protein DnaJ; Provisional
Probab=96.51 E-value=0.0036 Score=70.44 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=48.4
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
-|||+||||++.|+.++|.+||..+-.+- |+.--.......+-+.|.+||+.|.+ |..||.
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 68 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQ 68 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhh
Confidence 49999999999999999999997775553 55533333455677889999999998 678885
No 19
>PRK14278 chaperone protein DnaJ; Provisional
Probab=96.50 E-value=0.0037 Score=70.35 Aligned_cols=60 Identities=15% Similarity=0.088 Sum_probs=48.5
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
-|||.||||++.|+.++|.+||..+-.+- |+..-+.+ ...+=+.|.+||+.|.+ |+.||.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~-a~~~f~~i~~Ay~vL~d~~~r~~YD~ 66 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEE-AQEKFKEISVAYEVLSDPEKRRIVDL 66 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHH-HHHHHHHHHHHHHHhchhhhhhhhhc
Confidence 59999999999999999999998875554 66543433 45577789999999987 788885
No 20
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=96.49 E-value=0.0032 Score=69.92 Aligned_cols=59 Identities=19% Similarity=0.299 Sum_probs=47.0
Q ss_pred cchhccCCCCCCChHHHHHHHHHHhhh-hhccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 88 SCYQIIGVPNQAEKDEIVKSVMDLKRA-EIEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 88 D~YriLGv~~~a~~d~I~rA~~~~~~~-~p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
|||+||||++.|+.++|.+||..+..+ -|+..-+.+ ...+-+.|.+||+.|.+ |+.|+.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~-~~~~f~~i~~Ay~vL~d~~~R~~yd~ 63 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKE-AEEKFKEINEAYEVLSDPEKRAQYDQ 63 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcc-HHHHHHHHHHHHHHhhChHHHHhhhh
Confidence 899999999999999999999776544 367654333 34566789999999998 778874
No 21
>PRK14290 chaperone protein DnaJ; Provisional
Probab=96.47 E-value=0.0036 Score=70.05 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=47.5
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHH--HHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMD--AFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~--al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
+.|||+||||++.|+.++|.+||..+..+- |+. ...+ ....+-+.|.+||+.|.+ |+.||.
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~-~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~ 68 (365)
T PRK14290 2 AKDYYKILGVDRNASQEDIKKAFRELAKKWHPDL-HPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQ 68 (365)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCC-CCCchhHHHHHHHHHHHHHHHhcChhhhhhhcc
Confidence 469999999999999999999998775554 554 2222 344566779999999998 778885
No 22
>PRK14294 chaperone protein DnaJ; Provisional
Probab=96.44 E-value=0.0043 Score=69.42 Aligned_cols=61 Identities=20% Similarity=0.133 Sum_probs=48.8
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
-|||.||||++.|+.++|.+||..+-.+- |+..-+......+-+.+.+||+.|.+ |..||.
T Consensus 4 ~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~ 68 (366)
T PRK14294 4 RDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQ 68 (366)
T ss_pred CChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 59999999999999999999998775543 66544333456677788999999997 788885
No 23
>PRK14277 chaperone protein DnaJ; Provisional
Probab=96.41 E-value=0.005 Score=69.45 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=48.0
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
..|||+||||++.|+.++|.+||..+-.+- |+..-.......+-+.|.+||+.|.+ |+.||.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~ 69 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQ 69 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 469999999999999999999997774433 55433223345677889999999998 788884
No 24
>PRK14301 chaperone protein DnaJ; Provisional
Probab=96.38 E-value=0.0047 Score=69.39 Aligned_cols=61 Identities=18% Similarity=0.190 Sum_probs=48.5
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
.|||.||||++.|+.++|.+||..+-.+- |+.-=+...-..+-+.+.+||+.|.+ |..||.
T Consensus 4 ~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~ 68 (373)
T PRK14301 4 RDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDR 68 (373)
T ss_pred CChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhh
Confidence 59999999999999999999998875554 66533333445677788999999997 778884
No 25
>PRK14276 chaperone protein DnaJ; Provisional
Probab=96.35 E-value=0.0046 Score=69.58 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=47.3
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhh-hhccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRA-EIEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~-~p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
-|||+||||++.|+.++|.+||..+-.+ -|+.--+. ....+-+.|.+||+.|.+ |+.||.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 67 (380)
T PRK14276 4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEP-GAEEKYKEVQEAYETLSDPQKRAAYDQ 67 (380)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-CHHHHHHHHHHHHHHhcCHhhhhhHhh
Confidence 4999999999999999999999877444 36643333 235567789999999998 788885
No 26
>PRK14279 chaperone protein DnaJ; Provisional
Probab=96.34 E-value=0.0054 Score=69.38 Aligned_cols=62 Identities=24% Similarity=0.245 Sum_probs=48.3
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
.-|||.||||++.|+.++|.+||..+..+- |+..=.......+-+-|.+||+.|.| |+.||.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~ 73 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDE 73 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 369999999999999999999998774443 66532122335577789999999998 788985
No 27
>PRK10767 chaperone protein DnaJ; Provisional
Probab=96.24 E-value=0.007 Score=67.83 Aligned_cols=62 Identities=18% Similarity=0.197 Sum_probs=48.3
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
+.|||.||||++.|+.++|.+||..+-.+- |+..=.......|-+.+.+||+.|.+ |..||.
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~ 68 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQ 68 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhh
Confidence 369999999999999999999997765544 66532223345677889999999987 778885
No 28
>PRK14296 chaperone protein DnaJ; Provisional
Probab=96.16 E-value=0.0064 Score=68.35 Aligned_cols=60 Identities=20% Similarity=0.276 Sum_probs=45.7
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
-|||.||||++.|+.++|.+||..+-.+- |+..=..+ -..+=+-|.+||+.|.+ |+.||.
T Consensus 4 ~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~-a~~~F~~i~~AyevLsD~~KR~~YD~ 67 (372)
T PRK14296 4 KDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPD-AHDKMVEINEAADVLLDKDKRKQYDQ 67 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCch-HHHHHHHHHHHHHHhcCHHHhhhhhh
Confidence 59999999999999999999998773332 44321222 34466788999999998 788885
No 29
>PRK14287 chaperone protein DnaJ; Provisional
Probab=96.07 E-value=0.0095 Score=66.93 Aligned_cols=60 Identities=23% Similarity=0.293 Sum_probs=46.3
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
.|||.||||++.|+.++|.+||..+-.+- |+..=+.++ ..+-+.|.+||+.|.+ |+.||.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~-~~~f~~i~~Ay~~L~d~~kR~~YD~ 67 (371)
T PRK14287 4 RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDA-EDKFKEVKEAYDTLSDPQKKAHYDQ 67 (371)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhH-HHHHHHHHHHHHHhCcHhHHHHHHh
Confidence 59999999999999999999997764433 554222333 4466778999999997 788985
No 30
>PRK14280 chaperone protein DnaJ; Provisional
Probab=96.06 E-value=0.0071 Score=68.02 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=46.1
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
-|||+||||++.|+.++|.+||..+-.+- |+.--..++ ..+-+.|.+||+.|.+ |..||.
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a-~~~f~~i~~Ay~vL~d~~kr~~yD~ 67 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGA-DEKFKEISEAYEVLSDDQKRAQYDQ 67 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccH-HHHHHHHHHHHHHhccHhHHHHHHh
Confidence 49999999999999999999997774443 554222333 4466778899999997 778885
No 31
>PRK14291 chaperone protein DnaJ; Provisional
Probab=96.01 E-value=0.0091 Score=67.29 Aligned_cols=60 Identities=20% Similarity=0.189 Sum_probs=46.8
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
-|||.||||++.|+.++|.+||..+..+- |+..=.. ....|-+.|.+||+.|.+ |+.||.
T Consensus 3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~vLsd~~kR~~YD~ 66 (382)
T PRK14291 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNP-EAEEKFKEINEAYQVLSDPEKRKLYDQ 66 (382)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-cHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 59999999999999999999997764433 5542222 335567789999999998 788885
No 32
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.013 Score=63.86 Aligned_cols=63 Identities=19% Similarity=0.203 Sum_probs=53.2
Q ss_pred cchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhccccc
Q 003442 88 SCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAGNIRE 151 (819)
Q Consensus 88 D~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~~l~e 151 (819)
|||++|||+..|+..+|.+||.+|-.+- |+...+..+ ..+=+=|..||+.|.+ |++||..+.+
T Consensus 44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a-~~kF~eI~~AYEiLsd~eKR~~YD~~~~~ 110 (288)
T KOG0715|consen 44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEA-SKKFKEISEAYEILSDEEKRQEYDVYGLE 110 (288)
T ss_pred chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcch-hhHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence 9999999999999999999997777766 999999844 4555667789999997 7999976644
No 33
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=95.67 E-value=0.013 Score=64.22 Aligned_cols=60 Identities=18% Similarity=0.178 Sum_probs=48.3
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
-|||.||||++.++.++|.+||..+..+- |+..=. .....|-+.+.+||+.|.+ |..|+.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-~~~~~~f~~i~~Ay~~L~~~~kr~~yD~ 67 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRRAEYDQ 67 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 39999999999999999999997775444 775322 2456688899999999987 788885
No 34
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=95.64 E-value=0.016 Score=66.34 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=49.1
Q ss_pred cceeeccCcchhccCCCCCCChHHHHHHHHHHhhh-hhccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 80 TATVEIPVSCYQIIGVPNQAEKDEIVKSVMDLKRA-EIEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 80 ~~~m~iPlD~YriLGv~~~a~~d~I~rA~~~~~~~-~p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
+..|. .-|||.||||++.|+.++|.+||..+-.+ -|+.+=+ ..+=+.|.+||+.|.+ |..||.
T Consensus 22 ~~~~~-~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~ 88 (421)
T PTZ00037 22 KREVD-NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDE 88 (421)
T ss_pred ccccc-chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhh
Confidence 33444 56999999999999999999999776444 3776422 2466789999999998 788985
No 35
>PRK14289 chaperone protein DnaJ; Provisional
Probab=95.45 E-value=0.022 Score=64.27 Aligned_cols=61 Identities=18% Similarity=0.167 Sum_probs=45.3
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhhh-hccC-CCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEG-YTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~G-yS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
..|||.+|||++.|+.++|.+||..+-.+- |+.- -+.+ ...+-+.+..||+.|.+ |+.||.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~-a~~~f~~i~~Ay~~L~d~~~R~~yD~ 69 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKE-AEEKFKEAAEAYDVLSDPDKRSRYDQ 69 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChH-HHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 359999999999999999999997764442 3321 1233 34566788899999998 566874
No 36
>PRK14283 chaperone protein DnaJ; Provisional
Probab=95.45 E-value=0.021 Score=64.29 Aligned_cols=61 Identities=20% Similarity=0.212 Sum_probs=47.4
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
.-|||.+|||++.|+.++|.+||..+..+- |+..=..+ -..+=+-+.+||+.|.+ |+.||.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~-a~~~f~~i~~Ay~~Lsd~~kR~~YD~ 68 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEG-AEEKFKEISEAYAVLSDDEKRQRYDQ 68 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-HHHHHHHHHHHHHHhchhHHHHHHhh
Confidence 459999999999999999999998775543 66532223 34566778899999998 788885
No 37
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=95.35 E-value=0.22 Score=50.94 Aligned_cols=66 Identities=6% Similarity=0.066 Sum_probs=46.5
Q ss_pred eccCcchhccCCCCCC--ChHHHHHHHHHHhhhh-hccCCCHHHHHH-----HHHHHHHHHHhhcC---chhhhccc
Q 003442 84 EIPVSCYQIIGVPNQA--EKDEIVKSVMDLKRAE-IEEGYTMDAFMS-----RQDVLMDVRDKLLF---EPEYAGNI 149 (819)
Q Consensus 84 ~iPlD~YriLGv~~~a--~~d~I~rA~~~~~~~~-p~~GyS~~al~a-----R~~LL~~A~d~L~~---r~eY~~~l 149 (819)
..+.|||.|||||+.+ +..+|.++|..+-.+- |+.=-+...-.. ....+..||++|.+ |.+|.-.+
T Consensus 3 ~~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l 79 (176)
T PRK03578 3 SLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHL 79 (176)
T ss_pred CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHh
Confidence 4568999999999986 6889999997775554 554111111122 24799999999987 78887433
No 38
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=95.23 E-value=0.029 Score=67.76 Aligned_cols=61 Identities=21% Similarity=0.295 Sum_probs=49.2
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhcc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAGN 148 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~~ 148 (819)
-|||+||||++.++.++|+++|..+..+- |+.+-+.++ ..|-+.|..||+.|.+ |..|+.-
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eA-eekFqeINEAYEVLSDP~KRa~YD~f 66 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDA-ASIFAEINEANDVLSNPKKRANYDKY 66 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhH-HHHHHHHHHHHHHhCCHHHHHHHhhh
Confidence 38999999999999999999998776655 777655333 4466679999999998 7888854
No 39
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=95.19 E-value=0.54 Score=47.80 Aligned_cols=62 Identities=13% Similarity=0.265 Sum_probs=45.4
Q ss_pred cchhccCCCCCC--ChHHHHHHHHHHhhhh-hcc--CCCHH---HHHHHHHHHHHHHHhhcC---chhhhccc
Q 003442 88 SCYQIIGVPNQA--EKDEIVKSVMDLKRAE-IEE--GYTMD---AFMSRQDVLMDVRDKLLF---EPEYAGNI 149 (819)
Q Consensus 88 D~YriLGv~~~a--~~d~I~rA~~~~~~~~-p~~--GyS~~---al~aR~~LL~~A~d~L~~---r~eY~~~l 149 (819)
|||.|||||+++ +.++|.++|..+..+- |+. +-+.. .-..+...+..||++|.+ |..|.-.+
T Consensus 2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l 74 (171)
T PRK05014 2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSL 74 (171)
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHh
Confidence 899999999985 6789999998776554 664 22221 123466789999999987 78886433
No 40
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.051 Score=60.31 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=43.3
Q ss_pred cchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhcc
Q 003442 88 SCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAGN 148 (819)
Q Consensus 88 D~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~~ 148 (819)
|||+|||||..|+..+|.+||..|--+- |+.-=....-..-=+=|-.||+.|.+ |+.||..
T Consensus 17 DfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~ 81 (336)
T KOG0713|consen 17 DFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTY 81 (336)
T ss_pred CHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 9999999999999999999996664332 44322222222223346689999998 8999853
No 41
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=94.24 E-value=0.62 Score=47.62 Aligned_cols=63 Identities=11% Similarity=0.153 Sum_probs=46.4
Q ss_pred CcchhccCCCCCC--ChHHHHHHHHHHhhhh-hcc--CCCH---HHHHHHHHHHHHHHHhhcC---chhhhccc
Q 003442 87 VSCYQIIGVPNQA--EKDEIVKSVMDLKRAE-IEE--GYTM---DAFMSRQDVLMDVRDKLLF---EPEYAGNI 149 (819)
Q Consensus 87 lD~YriLGv~~~a--~~d~I~rA~~~~~~~~-p~~--GyS~---~al~aR~~LL~~A~d~L~~---r~eY~~~l 149 (819)
-+||.+||+|+++ +.++|.++|..+-.+- |+. +-+. ..-..+...+..||++|.+ |..|.-.+
T Consensus 4 ~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l 77 (173)
T PRK00294 4 PCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLAL 77 (173)
T ss_pred CChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence 3899999999997 6899999998775554 554 1121 2234567899999999987 77787544
No 42
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=94.19 E-value=0.078 Score=50.99 Aligned_cols=50 Identities=20% Similarity=0.289 Sum_probs=40.5
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhh-hhhccCCCHHHHHHHHHHHHHHHHhhc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKR-AEIEEGYTMDAFMSRQDVLMDVRDKLL 140 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~-~~p~~GyS~~al~aR~~LL~~A~d~L~ 140 (819)
-|+|+||||++.++.++|+++|..+.. .-|+.|=|++.. +-+.+|||.|.
T Consensus 65 ~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~----~kIneAyevL~ 115 (116)
T PTZ00100 65 SEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIA----SKVNEAKDLLL 115 (116)
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHHHh
Confidence 499999999999999999999977744 458887566532 45889999875
No 43
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.088 Score=51.90 Aligned_cols=61 Identities=21% Similarity=0.236 Sum_probs=47.8
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHH-HHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMD-AFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~-al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
.|||.||||++.++.++|.+||..+-.+- |+..=-.. ....+-..+.+|++.|.+ +..|+.
T Consensus 6 ~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~ 71 (237)
T COG2214 6 LDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDK 71 (237)
T ss_pred hhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhh
Confidence 68999999999999999999996665544 44433222 477888899999999987 677875
No 44
>PF04280 Tim44: Tim44-like domain; InterPro: IPR007379 Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane []. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [].; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005744 mitochondrial inner membrane presequence translocase complex; PDB: 2CW9_A 2FXT_A 3QK9_A.
Probab=93.99 E-value=0.87 Score=43.90 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccchhhhhhhhHHHHHHHHHHHHHHCCceEEEeeceeEEEEEEeeccCCCCceeEEE
Q 003442 691 EEAEALVKQWQAIKAEALGPNHEVHSLSEALDESMLVQWEALADAAKARSCYWRFVLLQLTIVQADIISHGGVGEIAEIE 770 (819)
Q Consensus 691 ~~Ae~lV~~Wq~aKa~AlGp~H~i~~L~eIL~g~mLs~W~~~A~~l~~~~~Yw~Y~l~~L~I~sV~v~~d~~~~~~A~Ve 770 (819)
+.|+++...=|.+-+ .=|++.|.+++++.||+.+....++.+.+|. ......|.|..+++..-...++.+.|.
T Consensus 22 ~~ak~~f~~i~~A~~-----~~D~~~l~~~~t~~~~~~~~~~i~~~~~~g~--~~~~~~v~i~~~~i~~~~~~~~~~~vt 94 (147)
T PF04280_consen 22 EEAKEAFLPIQEAWA-----KGDLEALRPLLTEELYERLQAEIKARRSRGE--VNDPEIVRIDNAEIVEAEQEGNFDQVT 94 (147)
T ss_dssp HHHHHTHHHHHHHHH-----HT-HHHHHHHB-HHHHHHHHHHHHHHHHTTE--EEEEEEEEEEEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHH-----cCCHHHHHHHhCHHHHHHHHHHHHHHHHcCC--cccceEEEEEEEEeeeceeeCCEEEEE
Confidence 445555555333332 2368899999999999999999998888884 444447777776665322224555555
Q ss_pred EEE--EEeEEeccc-CCCCCCCCccceEEEE--EEEEc-C--CCceeEeec
Q 003442 771 AVL--EEAAELVDE-SQPKNPNYYSSYKIRY--VLRKK-D--DGTWRFCKG 813 (819)
Q Consensus 771 A~V--~E~a~Lyd~-~~~~~~Sy~~ty~vRY--~L~r~-~--dG~WKI~~~ 813 (819)
+++ +..-..++. |..-..+-+....+.| .|.|. + ++.|++++-
T Consensus 95 v~f~~~~~~~~~d~~G~ii~G~~~~~~~~~e~W~f~r~~~~~~~~W~L~~i 145 (147)
T PF04280_consen 95 VRFRSQQIDYVDDKDGEIIEGDPDKIQEFTEYWTFERDLGSPNPNWRLAGI 145 (147)
T ss_dssp EEEEEEEEEEEETTTCTCCCCSTTS-EEEEEEEEEEE--TTCCCTEEEEEE
T ss_pred EEEEEEEEEEEECCCCcEeeCCCCCceEEEEEEEEEEeCCCCCCCEEEEEE
Confidence 555 444443442 3332122222333444 44443 1 247999874
No 45
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=93.57 E-value=0.11 Score=56.11 Aligned_cols=56 Identities=13% Similarity=0.269 Sum_probs=45.4
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hcc----CCCHH---HHHHHHHHHHHHHHhhcCc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEE----GYTMD---AFMSRQDVLMDVRDKLLFE 142 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~----GyS~~---al~aR~~LL~~A~d~L~~r 142 (819)
-|+|+||||++.++.++|.++|..++.+- |+. |-+++ .-..+-+-+.+|||.|..+
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999998886665 665 44543 3356788899999998764
No 46
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=92.75 E-value=0.2 Score=62.29 Aligned_cols=67 Identities=15% Similarity=0.065 Sum_probs=49.9
Q ss_pred ceeeccCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhcc
Q 003442 81 ATVEIPVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAGN 148 (819)
Q Consensus 81 ~~m~iPlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~~ 148 (819)
+.|--.-|||.||||++.|+.++|.+||..+-.+- |+.-=..+ -..+=+.|..||+.|.+ |+.|+.-
T Consensus 567 t~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~-A~ekFq~I~EAYeVLSDp~kRk~YD~~ 637 (1136)
T PTZ00341 567 TIEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNE-GFHKFKKINEAYQILGDIDKKKMYNKF 637 (1136)
T ss_pred cccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHhCCHHHHHHHhhc
Confidence 33344679999999999999999999996663332 55322222 34577899999999998 7889853
No 47
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.66 E-value=0.18 Score=55.51 Aligned_cols=88 Identities=17% Similarity=0.182 Sum_probs=61.2
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhh-hhhc--cCCCHHHHHHHHHHHHHHHHhhcC---chhhhcccccCCCCCCcc
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKR-AEIE--EGYTMDAFMSRQDVLMDVRDKLLF---EPEYAGNIRENIPPKPSL 159 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~-~~p~--~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~~l~e~~~~~~~l 159 (819)
=.|||-|||+++.++..+|.+||..... --|+ -|... -..|=+.|..||+.|.+ |..||.-.++...+. ..
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~--A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~-~~ 80 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQ--AAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ-GR 80 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChH--HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch-hh
Confidence 4799999999999999999999855442 2243 23333 67788999999999998 888997554433332 11
Q ss_pred cc------------cccchhhHHHHHHHc
Q 003442 160 KI------------QWAWLPAALCLLQEV 176 (819)
Q Consensus 160 ~I------------~~~~l~GAL~LLqE~ 176 (819)
.. +.....|++.+++|.
T Consensus 81 ~d~~~~~r~~f~~dl~~~~~~~~a~~~~~ 109 (296)
T KOG0691|consen 81 EDQADGFRKKFGSDLFERERGALALLKES 109 (296)
T ss_pred hhHHHHHHHHhhhhhhhhHHHHHhHHhhh
Confidence 11 234456777777776
No 48
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=92.04 E-value=0.36 Score=48.92 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=45.7
Q ss_pred CcchhccCCCCCC--ChHHHHHHHHHHhhhh-hccCCCHHH---HHHHHHHHHHHHHhhcC---chhhhccc
Q 003442 87 VSCYQIIGVPNQA--EKDEIVKSVMDLKRAE-IEEGYTMDA---FMSRQDVLMDVRDKLLF---EPEYAGNI 149 (819)
Q Consensus 87 lD~YriLGv~~~a--~~d~I~rA~~~~~~~~-p~~GyS~~a---l~aR~~LL~~A~d~L~~---r~eY~~~l 149 (819)
.|||.|||+|+.+ +.++|.++|..+-.+- |+.--+... .......+..||++|.+ |.+|.-.+
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l 73 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL 73 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 5899999999985 7899999997775554 665333211 11234689999999987 78886444
No 49
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.45 E-value=0.3 Score=56.30 Aligned_cols=109 Identities=14% Similarity=0.139 Sum_probs=74.1
Q ss_pred cchhccCCCCCCChHHHHHHHHHH-hhhhhcc-CCCHHHHHHHHHHHHHHHHhhcC---chhhh----cccccCCCCCCc
Q 003442 88 SCYQIIGVPNQAEKDEIVKSVMDL-KRAEIEE-GYTMDAFMSRQDVLMDVRDKLLF---EPEYA----GNIRENIPPKPS 158 (819)
Q Consensus 88 D~YriLGv~~~a~~d~I~rA~~~~-~~~~p~~-GyS~~al~aR~~LL~~A~d~L~~---r~eY~----~~l~e~~~~~~~ 158 (819)
+||.||||...++.++|..+|+.+ +..-|+- +=+.+--.++=++|++||+.|.+ |.=|+ +-|+.+... .+
T Consensus 9 c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~~s~-~~ 87 (508)
T KOG0717|consen 9 CYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGKNSD-TG 87 (508)
T ss_pred HHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCCCCc-cc
Confidence 799999999999999999999544 3344665 77888889999999999999998 33354 445443221 11
Q ss_pred ccccccchhhHHHHHHHcCchHHHHHHHHhhcCC---CCCCC---chhhHHHHHHHHhHHHHH
Q 003442 159 LKIQWAWLPAALCLLQEVGEEKLVLDIGRAALQH---PNAKP---YAHDFLLSMALAECAIAK 215 (819)
Q Consensus 159 l~I~~~~l~GAL~LLqE~GE~elVl~lg~~~L~~---~~~~~---~~~Dv~Ls~ALA~~elar 215 (819)
+..+.||+.=...+-. ....+ ...||.-++|+-.+..++
T Consensus 88 ------------------~~~~dlf~ff~~~~y~gy~~~~~gfy~vy~dvf~~~~~~e~~~~~ 132 (508)
T KOG0717|consen 88 ------------------VQIEDLFQFFTSSCYIGYENTSAGFYRVYQDVFNALASDELPFLG 132 (508)
T ss_pred ------------------cchHHHHHHhhhhhhcccccccchhHHHHHHHHHHHhhhhhhhcc
Confidence 3445555544443321 12222 368888888887777666
No 50
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.19 E-value=0.21 Score=53.00 Aligned_cols=55 Identities=25% Similarity=0.409 Sum_probs=47.7
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF 141 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~ 141 (819)
=.+|||||||...++.|+++.||..+..+- |+.| |.+|-.+|=.-+++|+...+-
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsg-s~~adaa~f~qideafrkvlq 101 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSG-SEEADAARFIQIDEAFRKVLQ 101 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCC-CccccHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999988887 7777 788889999999999975543
No 51
>PHA03102 Small T antigen; Reviewed
Probab=90.61 E-value=0.49 Score=47.61 Aligned_cols=56 Identities=13% Similarity=0.089 Sum_probs=43.1
Q ss_pred cchhccCCCCCC--ChHHHHHHHHHHhh-hhhccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 88 SCYQIIGVPNQA--EKDEIVKSVMDLKR-AEIEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 88 D~YriLGv~~~a--~~d~I~rA~~~~~~-~~p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
+.|.||||++.| +.++|++||..+.. --|+.|=++ .+-+.|..|++.|.+ +..|+.
T Consensus 6 ~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~----e~~k~in~Ay~~L~d~~~r~~yd~ 67 (153)
T PHA03102 6 ELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDE----EKMKELNTLYKKFRESVKSLRDLD 67 (153)
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchh----HHHHHHHHHHHHHhhHHHhccccc
Confidence 468999999999 99999999977744 448877444 366788899999987 444543
No 52
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.11 E-value=0.41 Score=52.02 Aligned_cols=61 Identities=23% Similarity=0.258 Sum_probs=47.1
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhh--hhccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRA--EIEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~--~p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
-+|+|-+||+|+.+++|+|.+||..+..+ |...|=.+++.. .-..|..||..|.| |.-||.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~d-kf~eIN~Ay~ILsD~~kR~~YD~ 95 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATD-KFKEINTAYAILSDPTKRNVYDE 95 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHH-HHHHHHHHHHHhcChhhhhhHHH
Confidence 68999999999999999999999877763 334454444443 44567899999998 777873
No 53
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=88.32 E-value=1.4 Score=39.30 Aligned_cols=34 Identities=24% Similarity=0.604 Sum_probs=22.6
Q ss_pred CceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEe
Q 003442 764 GEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFC 811 (819)
Q Consensus 764 ~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~ 811 (819)
++.|+|..+++ |.+|. +.+....|++. ||.|||+
T Consensus 78 g~~A~V~v~~~-----~~~g~--------~~~~~~~lvk~-dg~Wkv~ 111 (111)
T PF12870_consen 78 GDTATVTVKIT-----YKDGK--------EKTFTVPLVKE-DGKWKVC 111 (111)
T ss_dssp SSEEEEEEEEE-----ETTS---------EEEEEEEEEEE-TTEEEE-
T ss_pred CCEEEEEEEEE-----ECCCC--------eeEEEEEEEEE-CCEEEeC
Confidence 57999977774 43332 22467789996 5799996
No 54
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=87.99 E-value=6.8 Score=40.16 Aligned_cols=62 Identities=10% Similarity=0.136 Sum_probs=46.2
Q ss_pred CcchhccCCCCCC--ChHHHHHHHHHHhhhh-hccCCCH------HHHHHHHHHHHHHHHhhcC---chhhhccc
Q 003442 87 VSCYQIIGVPNQA--EKDEIVKSVMDLKRAE-IEEGYTM------DAFMSRQDVLMDVRDKLLF---EPEYAGNI 149 (819)
Q Consensus 87 lD~YriLGv~~~a--~~d~I~rA~~~~~~~~-p~~GyS~------~al~aR~~LL~~A~d~L~~---r~eY~~~l 149 (819)
.|||.++|+|+++ +...+.+.|.++-++- |+. |+. ..-.....+|..||.+|-+ |.+|=-.+
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~-f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L 75 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDN-FANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIAL 75 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCc-ccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHh
Confidence 4899999999997 8899999998776665 443 322 2334467899999999987 67775333
No 55
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.94 E-value=0.86 Score=52.85 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=44.9
Q ss_pred ecc-CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHH---HHHHHHHHHHHHHHhhcC---chhhh
Q 003442 84 EIP-VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMD---AFMSRQDVLMDVRDKLLF---EPEYA 146 (819)
Q Consensus 84 ~iP-lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~---al~aR~~LL~~A~d~L~~---r~eY~ 146 (819)
+++ +|||-+|+||+.|+.|||.+||..+..-- |+.=-+++ +-.--=+.++.||+.|.| |.-||
T Consensus 5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD 75 (546)
T KOG0718|consen 5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYD 75 (546)
T ss_pred ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 444 59999999999999999999997765433 33323232 223334678999999998 45565
No 56
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=86.88 E-value=0.74 Score=51.87 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=47.9
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhhhhccCCCHHH--HHHHHHHHHHHH--HhhcC---chhhhc
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRAEIEEGYTMDA--FMSRQDVLMDVR--DKLLF---EPEYAG 147 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~~p~~GyS~~a--l~aR~~LL~~A~--d~L~~---r~eY~~ 147 (819)
-=|||+||||-..|.+.+|.+||+.+-.+=--+-|+.+- =.+-+..++.|+ +.|.+ |+.+|.
T Consensus 393 kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn 461 (504)
T KOG0624|consen 393 KRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN 461 (504)
T ss_pred cchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC
Confidence 359999999999999999999998776665445677654 566677888877 66766 566664
No 57
>PF12883 DUF3828: Protein of unknown function (DUF3828); InterPro: IPR024289 This domain currently has no known function.; PDB: 3KZT_A.
Probab=86.56 E-value=0.39 Score=45.83 Aligned_cols=87 Identities=11% Similarity=0.198 Sum_probs=49.3
Q ss_pred cCCCccccc-hhhhhhhhHHHHHHHHHHH--HHHCCceEEEe-------eceeEEEEEEeeccCCCCceeEEEEEEEEeE
Q 003442 708 LGPNHEVHS-LSEALDESMLVQWEALADA--AKARSCYWRFV-------LLQLTIVQADIISHGGVGEIAEIEAVLEEAA 777 (819)
Q Consensus 708 lGp~H~i~~-L~eIL~g~mLs~W~~~A~~--l~~~~~Yw~Y~-------l~~L~I~sV~v~~d~~~~~~A~VeA~V~E~a 777 (819)
..|.++... +..+++..++..+...... .--.--|+.+. +.+|+|..++. .++.|.|.+++
T Consensus 20 ~~~~~~~~~~~~~yvsk~~~~~l~~~~~~~~~~~D~D~f~~aQD~~~~w~~~i~v~~~~~-----~~~~a~v~v~~---- 90 (120)
T PF12883_consen 20 KDPPADDEELMERYVSKETIAKLKKIYQLEQGILDFDYFIKAQDYDPDWVSNIKVGPAKM-----DGDCAVVYVTF---- 90 (120)
T ss_dssp HHHHHHHHHHHHHHB-HHHHHHHHHHH----HHSSSBTTTTBSS--TTSGGG-EEEEEET-----TEEEEEEEETT----
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHhhhhcccCCcCCCCceecccCChhhHhhEEEeeccc-----cCCeEEEEEEE----
Confidence 445555555 8888888888888765531 11111233321 24666764432 34566665444
Q ss_pred EecccCCCCCCCCccceEEEEEEEEcCCCceeEeec
Q 003442 778 ELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKG 813 (819)
Q Consensus 778 ~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~~~ 813 (819)
| ..+....++.|.|++++ |+|||.+-
T Consensus 91 -----G----~~~~~~~~~~~~l~ke~-g~WkI~~V 116 (120)
T PF12883_consen 91 -----G----KNNEKKQTVIVCLVKEN-GRWKIDDV 116 (120)
T ss_dssp -----T----STT-EEEEEEEEEEEET-TEEEEEEE
T ss_pred -----e----cCCCCCEEEEEEEEEEC-CEEEEEEe
Confidence 2 11234567999999985 79999874
No 58
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=85.73 E-value=1.3 Score=49.74 Aligned_cols=57 Identities=19% Similarity=0.236 Sum_probs=41.5
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHH--HHHHHHhhcC---chhhhc
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDV--LMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~L--L~~A~d~L~~---r~eY~~ 147 (819)
+-.||.||||++.|+.++|.+||..+-.+- |+-.+. ++... +-.||+.|.| |+-||+
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~-----~~ekfkei~~AyevLsd~ekr~~yD~ 65 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD-----AGEKFKEISQAYEVLSDPEKREIYDQ 65 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 347999999999999999999996664432 555555 22222 4468999998 666774
No 59
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=84.02 E-value=0.98 Score=52.27 Aligned_cols=81 Identities=14% Similarity=0.137 Sum_probs=55.5
Q ss_pred cceeecccccCccceeec--cCcchhccCCCCCCChHHHHHHHHHH-hhhhhccCCCHHHHHHHHHHHHHHHHhhcC---
Q 003442 68 DTRIVENAQTTATATVEI--PVSCYQIIGVPNQAEKDEIVKSVMDL-KRAEIEEGYTMDAFMSRQDVLMDVRDKLLF--- 141 (819)
Q Consensus 68 ~~~~~~~~~~~~~~~m~i--PlD~YriLGv~~~a~~d~I~rA~~~~-~~~~p~~GyS~~al~aR~~LL~~A~d~L~~--- 141 (819)
+.+|..|+..-+-...++ =+|+|-+|||++.++.++|.|.|..+ +-=-|+---.+.| ..==.+|+.|++.+.+
T Consensus 214 e~~va~n~t~~adrl~re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A-~Eafk~Lq~Afevig~~~k 292 (490)
T KOG0720|consen 214 EIPVATNATSFADRLSRELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRA-EEAFKKLQVAFEVIGDSVK 292 (490)
T ss_pred ccccccchhhHHHhhhhhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhH-HHHHHHHHHHHHHhcchhh
Confidence 445555655433333333 48999999999999999999999554 2222444453333 3334689999999987
Q ss_pred chhhhccc
Q 003442 142 EPEYAGNI 149 (819)
Q Consensus 142 r~eY~~~l 149 (819)
|.+|+..+
T Consensus 293 R~eYd~e~ 300 (490)
T KOG0720|consen 293 RKEYDLEL 300 (490)
T ss_pred hhHHHHHH
Confidence 89999766
No 60
>PRK13616 lipoprotein LpqB; Provisional
Probab=81.88 E-value=2.1 Score=51.45 Aligned_cols=100 Identities=16% Similarity=0.224 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccchhhhhhhhHHHHHHHHHHHHHHCCceEEEeeceeEEEEEEeeccCCCCceeEEE
Q 003442 691 EEAEALVKQWQAIKAEALGPNHEVHSLSEALDESMLVQWEALADAAKARSCYWRFVLLQLTIVQADIISHGGVGEIAEIE 770 (819)
Q Consensus 691 ~~Ae~lV~~Wq~aKa~AlGp~H~i~~L~eIL~g~mLs~W~~~A~~l~~~~~Yw~Y~l~~L~I~sV~v~~d~~~~~~A~Ve 770 (819)
.+.+.||+..+.+= | +|..+-..-.++||.++=..|+... .--.|+ ++.+. +. ..+.+++++.
T Consensus 54 a~p~~iVrgFl~A~--a-~p~~~y~~AR~fLt~~aa~~W~p~~-------~~~V~d--~~~~~--~~---~~~~~~~~~~ 116 (591)
T PRK13616 54 MDPDLLLRDFLKAS--A-DPANRHLAARQFLTESASNAWDDAG-------SALVID--RIDFN--ES---TRSADRVTYT 116 (591)
T ss_pred CCHHHHHHHHHHhc--c-CCcchHHHHHHhcCHHHHcccCCCC-------cEEEEe--cCCcc--cc---cCCCccEEEE
Confidence 34567999999663 3 5666777788999999999998542 222233 22121 11 1234455555
Q ss_pred EEEEEeEEecccCCCC--CCCCccceEEEEEEEEcCCCceeEee
Q 003442 771 AVLEEAAELVDESQPK--NPNYYSSYKIRYVLRKKDDGTWRFCK 812 (819)
Q Consensus 771 A~V~E~a~Lyd~~~~~--~~Sy~~ty~vRY~L~r~~dG~WKI~~ 812 (819)
++.+=.+++-.+|.-. +..| +..|+|++. ||+|||.+
T Consensus 117 v~~~~vg~l~~~G~y~~~~~~~----~~~~~l~~~-dgqWRIs~ 155 (591)
T PRK13616 117 IRANIVGSLSDGGVFEPANGSL----ETPIELVKV-DGEWRIDR 155 (591)
T ss_pred EEEEEEEEEcCCccEecCCCCe----eeeEEEEEE-CCEEEecc
Confidence 5555477777666532 2333 359999997 58999985
No 61
>PRK13613 lipoprotein LpqB; Provisional
Probab=77.21 E-value=9.5 Score=46.13 Aligned_cols=106 Identities=17% Similarity=0.295 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccchhhhhhhhHHHHHHHHHHHHHHCCceEEEeeceeEEEEEEeeccCCCCceeEEE
Q 003442 691 EEAEALVKQWQAIKAEALGPNHEVHSLSEALDESMLVQWEALADAAKARSCYWRFVLLQLTIVQADIISHGGVGEIAEIE 770 (819)
Q Consensus 691 ~~Ae~lV~~Wq~aKa~AlGp~H~i~~L~eIL~g~mLs~W~~~A~~l~~~~~Yw~Y~l~~L~I~sV~v~~d~~~~~~A~Ve 770 (819)
...+.||+-.+.+ +..+-.+| ..-.++||+++=..|+.. +.---|+ +..+..... .....++.++|.
T Consensus 60 a~P~~iVrgFl~A-~a~~~~dy--~~AR~yLT~~aa~~W~P~-------~~v~V~d--~~~~~~~~~-~~~~~~~~~~v~ 126 (599)
T PRK13613 60 AAPAEIVQGFLEA-LTSFDPDY--ETARKYLTGDAAKSWRPG-------GSVTVLA--GAPTVSADR-EGDREGDDATVT 126 (599)
T ss_pred CCHHHHHHHHHHh-ccCCcccH--HHHHHHcCHhHHcccCCC-------CceEEEe--CCCcccccc-cccCCCccEEEE
Confidence 3456799999988 44444444 556799999999999853 2223333 111111111 011235677777
Q ss_pred EEEEEeEEecccCCCC--CCCCccceEEEEEEEEcCCCceeEee
Q 003442 771 AVLEEAAELVDESQPK--NPNYYSSYKIRYVLRKKDDGTWRFCK 812 (819)
Q Consensus 771 A~V~E~a~Lyd~~~~~--~~Sy~~ty~vRY~L~r~~dG~WKI~~ 812 (819)
++.+=.+++-.+|.-. +..|.. ++.|+|++. ||+|||.+
T Consensus 127 v~~~~vg~ld~~G~y~p~~~~~~~--~~~~~l~~~-dgqWRIs~ 167 (599)
T PRK13613 127 LTGTRVATIDEDGQYVPASGGYYT--DVHLTLQDK-TGQWRIDR 167 (599)
T ss_pred EEEEEEEEECCCCCEecCCCCeee--eeEEEEEec-CCeEEecc
Confidence 7777688887666533 233322 367999986 58999985
No 62
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=76.69 E-value=8.1 Score=38.50 Aligned_cols=45 Identities=27% Similarity=0.512 Sum_probs=30.1
Q ss_pred CCceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEee
Q 003442 763 VGEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCK 812 (819)
Q Consensus 763 ~~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~~ 812 (819)
+|+-|.+.+...=..+ +.+| ..-...++..|-|+++.||+|||.-
T Consensus 82 ~GD~a~~~~~~~~~~~-~~dg----~~~~~~~Rat~v~rK~~dg~Wk~~~ 126 (137)
T COG4319 82 SGDVAFVTALLLLTGT-KKDG----PPADLAGRATYVFRKEADGGWKLAH 126 (137)
T ss_pred cCCEEEEEEeeeeecc-CCCC----cchhheeeeEEEEEEcCCCCEEEEE
Confidence 5788888666532322 2222 2223477899999999999999974
No 63
>PRK13614 lipoprotein LpqB; Provisional
Probab=76.10 E-value=8.3 Score=46.40 Aligned_cols=101 Identities=17% Similarity=0.199 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccchhhhhhhhHHHHHHHHHHHHHHCCceEEEeeceeEEEEEEeeccCCCCceeEEEE
Q 003442 692 EAEALVKQWQAIKAEALGPNHEVHSLSEALDESMLVQWEALADAAKARSCYWRFVLLQLTIVQADIISHGGVGEIAEIEA 771 (819)
Q Consensus 692 ~Ae~lV~~Wq~aKa~AlGp~H~i~~L~eIL~g~mLs~W~~~A~~l~~~~~Yw~Y~l~~L~I~sV~v~~d~~~~~~A~VeA 771 (819)
+.+.||+-.+.+ .=+|..+-..-.++||.++=..|+.. +.--.|+ .++.+. ...+.+..+|.+
T Consensus 61 ~p~~iVrgFl~A---~a~~~~~y~~AR~fLT~~aa~~W~p~-------~~~~V~~-~~~~~~------~~~~~~~~~v~~ 123 (573)
T PRK13614 61 SPETVIEGFYAA---GSGYEDDYAVARQYLTQAAATTWKPD-------QRTLVFR-DNPRVV------KTGNENEYNYEL 123 (573)
T ss_pred CHHHHHHHHHHh---ccCCcccHHHHHHHcChHHHhccCCC-------CcEEEEe-cCcccc------ccCCCcEEEEEE
Confidence 345699999977 33454455666799999999999844 2233343 212111 122334556655
Q ss_pred EEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEee
Q 003442 772 VLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCK 812 (819)
Q Consensus 772 ~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~~ 812 (819)
++ .+++-.+|.-......++.++.|+|++. ||+|||.+
T Consensus 124 ~v--~g~ld~~G~y~~~~~~~~~~~~f~l~k~-dgqWRIs~ 161 (573)
T PRK13614 124 DV--AYSVDADGIATQFPEGTKETIPVTLTQV-DGEWRISK 161 (573)
T ss_pred EE--EEEEcCCCcEecCCCCceeeeeEEEEEe-CCeEEecc
Confidence 55 6667655542210111223358999996 58999985
No 64
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=75.62 E-value=5 Score=42.77 Aligned_cols=59 Identities=15% Similarity=0.101 Sum_probs=40.9
Q ss_pred eccCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcCc
Q 003442 84 EIPVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLFE 142 (819)
Q Consensus 84 ~iPlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~r 142 (819)
+.=-|=|+|||++|.++..+|.+||..+.-+- |+-.=-++.-..-.+-+.-||..|+|.
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~ 155 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDK 155 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcch
Confidence 34468899999999999999999997664322 332111133444456677899999983
No 65
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=75.37 E-value=2.8 Score=43.53 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=42.4
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHh-hhhhccCCCH--HHHHHHHHHHHHHHHhhcC---chhhhcc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLK-RAEIEEGYTM--DAFMSRQDVLMDVRDKLLF---EPEYAGN 148 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~-~~~p~~GyS~--~al~aR~~LL~~A~d~L~~---r~eY~~~ 148 (819)
.|||+||||+..++.++|.+||..+. ..-|+..-+. .+.. +...+.+|++.|.+ |..|+..
T Consensus 3 ~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~-~~~~~~ea~~~ls~~~kr~~~d~~ 69 (306)
T KOG0714|consen 3 KDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEA-KFKEIAEAYEVLSDPKKRKIYDQY 69 (306)
T ss_pred ccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHH-HHhhhhccccccCCHHHhhhcccc
Confidence 69999999999999999999984443 3336655555 3333 54555578888876 4556543
No 66
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=75.23 E-value=5.8 Score=39.64 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=32.7
Q ss_pred EEEeeceeEEEEEEeeccCCCCceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEeeccc
Q 003442 743 WRFVLLQLTIVQADIISHGGVGEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKGDI 815 (819)
Q Consensus 743 w~Y~l~~L~I~sV~v~~d~~~~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~~~~v 815 (819)
..|.-++++|.++....+ .+++.+.|.++|.-. ++ ..+.|.|.|.+. +|+|||.|-.+
T Consensus 80 ~~y~~~~v~~~~~~~~~~-~~~~~~~V~t~i~~~------~g-------~~i~v~y~l~~~-~g~Wki~Dv~i 137 (170)
T PF05494_consen 80 DEYSGQSVEVLSEPPNGR-KGGNRAIVRTEIISK------DG-------QPIPVDYRLRKK-DGKWKIYDVII 137 (170)
T ss_dssp HT-SS-EEEE------S--TT-SEEEEEEEEEET-------T-------EEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred HhhCCCeEEEEeccCCCC-CCCCEEEEEEEEEcC------CC-------CcEEEEEEEEEc-CCCeEEEEEEE
Confidence 345556777875544211 145799997777221 11 367899999995 57999998654
No 67
>PRK13615 lipoprotein LpqB; Provisional
Probab=74.61 E-value=9.2 Score=45.89 Aligned_cols=98 Identities=11% Similarity=0.243 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccchhhhhhhhHHHHHHHHHHHHHHCCceEEEeeceeEEEEEEeeccCCCCceeEEEE
Q 003442 692 EAEALVKQWQAIKAEALGPNHEVHSLSEALDESMLVQWEALADAAKARSCYWRFVLLQLTIVQADIISHGGVGEIAEIEA 771 (819)
Q Consensus 692 ~Ae~lV~~Wq~aKa~AlGp~H~i~~L~eIL~g~mLs~W~~~A~~l~~~~~Yw~Y~l~~L~I~sV~v~~d~~~~~~A~VeA 771 (819)
+.+.||+-.+.+ +. +|..+-..-.++||+++=..|+... .---|+ . ++ + ....+.+..+|.+
T Consensus 52 ~Pd~iVrgFl~A-~a--~p~~dy~~AR~fLT~~Aa~~W~p~~-------~~~V~d--~--~~--~--~~~~~~~~~~v~~ 113 (557)
T PRK13615 52 GPDDVIAGFVDA-AT--SSADQYGVARQFLSSDFASRWDPFA-------SVVVWE--G--QA--R--TSEEVDGTYSYSV 113 (557)
T ss_pred CHHHHHHHHHHh-cc--CCCccHHHHHHHcChhHHcccCCCC-------ceEEEe--C--Cc--c--ccCCCccEEEEEE
Confidence 346699999988 33 5555666667999999999998542 222233 1 11 1 1111234555555
Q ss_pred EEEEeEEecccCCCC--CCCCccceEEEEEEEEcCCCceeEee
Q 003442 772 VLEEAAELVDESQPK--NPNYYSSYKIRYVLRKKDDGTWRFCK 812 (819)
Q Consensus 772 ~V~E~a~Lyd~~~~~--~~Sy~~ty~vRY~L~r~~dG~WKI~~ 812 (819)
++ .+++-.+|.-. +..| +.+..|+|++. ||+|||.+
T Consensus 114 ~~--~g~ld~~G~y~~~~~~~--~~~~~f~l~k~-dgqWRIs~ 151 (557)
T PRK13615 114 TT--IATVDGQGHYREVGSDQ--ETRLSFQLVQE-RGEWRIAK 151 (557)
T ss_pred EE--EEEECCCCcEEeCCCCc--eeeeeEEEEEe-CCEEEecc
Confidence 54 77776666532 2333 34568999996 58999985
No 68
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=72.56 E-value=5.7 Score=42.82 Aligned_cols=60 Identities=22% Similarity=0.266 Sum_probs=45.7
Q ss_pred cchhccCCCCCCChHHHHHHHHHH-hhhhhccCCCHHHHHHHH--HHHHHHHHhhcC---chhhhc
Q 003442 88 SCYQIIGVPNQAEKDEIVKSVMDL-KRAEIEEGYTMDAFMSRQ--DVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 88 D~YriLGv~~~a~~d~I~rA~~~~-~~~~p~~GyS~~al~aR~--~LL~~A~d~L~~---r~eY~~ 147 (819)
|-|.||||...|+..+|++||..+ +.--|+.-.-++-..++. |.|..+|..|.+ |..|+.
T Consensus 15 d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDe 80 (264)
T KOG0719|consen 15 DLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDE 80 (264)
T ss_pred CHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 899999999999999999998433 333355544455555554 678899999987 788984
No 69
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=71.96 E-value=9.9 Score=32.22 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=49.1
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLR 238 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~ 238 (819)
++++.|+|+.++++-++.|+-...- .|--.-+|.++..+|.-....+++.+|.+.+++++++.+
T Consensus 14 ~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 14 VYRELGRYDEALDYYEKALDIEEQL---GDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHT---TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 5679999999999999999631101 112234577788899999999999999999999999875
No 70
>PF13446 RPT: A repeated domain in UCH-protein
Probab=70.65 E-value=7.8 Score=32.74 Aligned_cols=44 Identities=14% Similarity=0.260 Sum_probs=34.0
Q ss_pred cchhccCCCCCCChHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHH
Q 003442 88 SCYQIIGVPNQAEKDEIVKSVMDLKRAEIEEGYTMDAFMSRQDVLMDVR 136 (819)
Q Consensus 88 D~YriLGv~~~a~~d~I~rA~~~~~~~~p~~GyS~~al~aR~~LL~~A~ 136 (819)
+.|++|||++..+.|.|..+|+..+..-|. ..-..|+.|-..|-
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~~~P~-----~~~~~r~AL~~Ia~ 49 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVNDDPS-----QKDTLREALRVIAE 49 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHHcChH-----hHHHHHHHHHHHHH
Confidence 469999999999999999999999986653 45555655555443
No 71
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=70.07 E-value=24 Score=32.14 Aligned_cols=59 Identities=20% Similarity=0.339 Sum_probs=33.9
Q ss_pred EeeceeEEEEEEeeccCCCCceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEee
Q 003442 745 FVLLQLTIVQADIISHGGVGEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCK 812 (819)
Q Consensus 745 Y~l~~L~I~sV~v~~d~~~~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~~ 812 (819)
...|-+....|++ | ++.|++.+.+.-.......+. ......-++..++++.+ |+|||..
T Consensus 67 ~~~H~~~~~~v~~--d---gd~A~~~~~~~~~~~~~~~g~---~~~~~~g~y~~~~~r~~-g~W~i~~ 125 (127)
T PF13577_consen 67 ATRHMVTNPVVDV--D---GDTATVRSYVLATHRDPDDGE---PALWSGGRYTDELVRED-GGWRISS 125 (127)
T ss_dssp EEEEEEEEEEEEE--E---TTEEEEEEEEEEEEEEETTTE---EEEEEEEEEEEEEEEET-TEEEEEE
T ss_pred ceeEEccceEEEE--c---CCEEEEEEEEEEEEEEcCCCc---eEEEEEEEEEEEEEEEC-CEEEEEE
Confidence 3445444444454 3 368888888854433333221 22223346788889974 7899975
No 72
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=69.74 E-value=31 Score=31.44 Aligned_cols=18 Identities=28% Similarity=0.656 Sum_probs=11.9
Q ss_pred EEEEE--EEEcCCCceeEeec
Q 003442 795 KIRYV--LRKKDDGTWRFCKG 813 (819)
Q Consensus 795 ~vRY~--L~r~~dG~WKI~~~ 813 (819)
..+|+ +++. ||+|||...
T Consensus 102 ~~~~t~~~~~~-~g~W~I~~~ 121 (128)
T TIGR02246 102 AVRLTFVAVKR-DGRWLLAAD 121 (128)
T ss_pred ceEEEEEEEee-CCeEEEEec
Confidence 35555 5564 579999864
No 73
>PHA02624 large T antigen; Provisional
Probab=69.52 E-value=6.7 Score=47.51 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=40.9
Q ss_pred cchhccCCCCCC--ChHHHHHHHHHHhhh-hhccCCCHHHHHHHHHHHHHHHHhhcC
Q 003442 88 SCYQIIGVPNQA--EKDEIVKSVMDLKRA-EIEEGYTMDAFMSRQDVLMDVRDKLLF 141 (819)
Q Consensus 88 D~YriLGv~~~a--~~d~I~rA~~~~~~~-~p~~GyS~~al~aR~~LL~~A~d~L~~ 141 (819)
++|++|||++.+ +.++|++||..+..+ -|+.|=++ .+-+.|..||+.|.+
T Consensus 12 elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGde----ekfk~Ln~AYevL~d 64 (647)
T PHA02624 12 ELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDE----EKMKRLNSLYKKLQE 64 (647)
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcH----HHHHHHHHHHHHHhc
Confidence 789999999999 999999999777444 48877443 356788899999976
No 74
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=68.91 E-value=38 Score=39.00 Aligned_cols=100 Identities=13% Similarity=0.163 Sum_probs=64.5
Q ss_pred CccccchhhhhhhhHHHHHHHHHHHHHHCCceEEEeeceeEEEEEEeeccCC--CCceeEEEEEEE-EeEEecccCC-CC
Q 003442 711 NHEVHSLSEALDESMLVQWEALADAAKARSCYWRFVLLQLTIVQADIISHGG--VGEIAEIEAVLE-EAAELVDESQ-PK 786 (819)
Q Consensus 711 ~H~i~~L~eIL~g~mLs~W~~~A~~l~~~~~Yw~Y~l~~L~I~sV~v~~d~~--~~~~A~VeA~V~-E~a~Lyd~~~-~~ 786 (819)
.-|++.|...|.+.++..+-...++-+.+|.+.+..+.+ |.+|+|..-.. +++.+.|.++.. |-...+.+.. .+
T Consensus 264 kGD~e~LK~~lse~vy~~f~a~I~qr~~~G~~~d~~iL~--I~~veI~~ak~~e~~~~pviiV~F~aQqI~~vRd~~tGe 341 (378)
T TIGR00984 264 KGDLEVLKSWCSEAPFSVYATVVKEYKKMGVSTKGRILD--IRGVEIASGKLLEPGDIPVLIVTFRAQEINVTKNAKSGE 341 (378)
T ss_pred cCCHHHHHHhhCHHHHHHHHHHHHHHHHCCCeeeeEEee--ecCeEEEEEEecCCCCeEEEEEEEEEEEEEEEEcCCCCc
Confidence 358899999999999999999988889999999987654 55555543111 235666666632 4444444333 11
Q ss_pred --CCCCccceEEEEEEEEcCC---------CceeEee
Q 003442 787 --NPNYYSSYKIRYVLRKKDD---------GTWRFCK 812 (819)
Q Consensus 787 --~~Sy~~ty~vRY~L~r~~d---------G~WKI~~ 812 (819)
-.+-++-.+|.|.+.++.+ .+|||-+
T Consensus 342 VVeGd~d~I~~v~yvWtF~Rd~~~~~~~~~~~Wrl~e 378 (378)
T TIGR00984 342 VVAGDPDNIQRINYAWVFTRDVEELDNPETLGWKILE 378 (378)
T ss_pred eeeCCCCceeEEEEEEEEEEcccccCCCCCCceeecC
Confidence 1222334578888777633 4698853
No 75
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=58.90 E-value=75 Score=28.45 Aligned_cols=58 Identities=14% Similarity=0.319 Sum_probs=34.5
Q ss_pred ceEEEeeceeEEEEEEeeccCCCCceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEeec
Q 003442 741 CYWRFVLLQLTIVQADIISHGGVGEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKG 813 (819)
Q Consensus 741 ~Yw~Y~l~~L~I~sV~v~~d~~~~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~~~ 813 (819)
--+.|+..+++|. . +++.|.|.... ..++..++ ..+....++.+.+++.+ |.|||...
T Consensus 57 ~~~~~~~~~~~v~---~-----~~~~a~~~~~~--~~~~~~~~----~~~~~~~r~t~v~~k~~-~~Wki~h~ 114 (121)
T PF13474_consen 57 RPISIEFEDVQVS---V-----SGDVAVVTGEF--RLRFRNDG----EEIEMRGRATFVFRKED-GGWKIVHI 114 (121)
T ss_dssp SEEEEEEEEEEEE---E-----ETTEEEEEEEE--EEEEECTT----CEEEEEEEEEEEEEEET-TEEEEEEE
T ss_pred ceEEEEEEEEEEE---E-----CCCEEEEEEEE--EEEEecCC----ccceeeEEEEEEEEEEC-CEEEEEEE
Confidence 4666665666663 1 23577775544 33333222 22345567888888875 68999864
No 76
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=56.50 E-value=23 Score=36.87 Aligned_cols=55 Identities=13% Similarity=0.234 Sum_probs=34.5
Q ss_pred EEEeeceeEEEEEEeeccCCCCceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEeeccc
Q 003442 743 WRFVLLQLTIVQADIISHGGVGEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKGDI 815 (819)
Q Consensus 743 w~Y~l~~L~I~sV~v~~d~~~~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~~~~v 815 (819)
..|.-++++|.++... +++++.|..+|. .+++ ..+.|-|.|... +|+|||.|-.|
T Consensus 106 ~~y~~~~i~v~~~~~~----~~~~~~V~t~i~-----~~~g--------~~i~V~y~l~~~-~g~WkV~DV~i 160 (198)
T TIGR03481 106 KSYAGERFEVEEQQPS----PRGRVIVRSTIV-----SDGG--------DPVKFDYIMRQG-QGKWRIVDILA 160 (198)
T ss_pred HhhcCceEEEeecccC----CCCCEEEEEEEE-----cCCC--------CcEEEEEEEEec-CCCeEEEEEEE
Confidence 3466677888754332 344677755552 1111 256799999875 57899998765
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=53.24 E-value=2.8e+02 Score=34.91 Aligned_cols=159 Identities=17% Similarity=0.086 Sum_probs=99.7
Q ss_pred ccccccchhhHHHHHHHcCchHHHHHHHHhhcCCC--CCCCchhhHHHHHHHHhHHHHHHH--Hhhh--chhhHHHHHHH
Q 003442 159 LKIQWAWLPAALCLLQEVGEEKLVLDIGRAALQHP--NAKPYAHDFLLSMALAECAIAKVA--FEKN--NVSQGFEALAR 232 (819)
Q Consensus 159 l~I~~~~l~GAL~LLqE~GE~elVl~lg~~~L~~~--~~~~~~~Dv~Ls~ALA~~elare~--~e~~--~~~~~~e~Le~ 232 (819)
...+.--+-++=...-..|-+++.+++++.++..- +..-+.+=.-+..+++|-..|+++ ...+ .-..+..+||+
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 33345555666666788999999999999999733 222345556788899999999885 2222 23344445555
Q ss_pred HHHHHHhc-------cCCCCchhHHHHHHHHhhhChhhHH---------hhhCCCCCcchHHHHHHHHHHHHHHH-HcCc
Q 003442 233 AQCLLRSK-------VSLGNMPLLSQIEESLEELAPACTL---------ELLGMPHSPENAERRRGAIAALRELI-RQGL 295 (819)
Q Consensus 233 al~LL~~~-------~~la~p~lq~eI~~~L~~L~PyriL---------ELLalPl~~e~~~Rr~ggL~lLr~~L-RgGi 295 (819)
|+++=--+ ... -.+|++|++.+...+-+--+ -||++=++. .+|-++|+.++.+.+ .-|.
T Consensus 470 av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa--~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSA--QKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred HHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHhhh
Confidence 54421111 001 13578888888876544332 467777754 379999999999999 2222
Q ss_pred -----CCC--CCCCCCCHHHHHHHHHHHhhHHH
Q 003442 296 -----DVE--TSCRVQDWPCFLSRALNRLMAAE 321 (819)
Q Consensus 296 -----~~~--sgl~~~df~~F~qQ~r~~LTa~E 321 (819)
+|. -.++..|.+.-+.-.++.|-.=|
T Consensus 546 N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we 578 (799)
T KOG4162|consen 546 NHVLMDGKIHIELTFNDREEALDTCIHKLALWE 578 (799)
T ss_pred hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHH
Confidence 222 44567777777766666665544
No 78
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=52.21 E-value=38 Score=31.49 Aligned_cols=15 Identities=33% Similarity=0.818 Sum_probs=11.4
Q ss_pred EEEEEEcCCCceeEee
Q 003442 797 RYVLRKKDDGTWRFCK 812 (819)
Q Consensus 797 RY~L~r~~dG~WKI~~ 812 (819)
-.+|.+. ||+|||.+
T Consensus 98 ~~~L~K~-dg~WkIv~ 112 (116)
T PF12893_consen 98 YFTLVKT-DGGWKIVS 112 (116)
T ss_dssp EEEEEEE-TTEEEEEE
T ss_pred EEEEEEE-CCEEEEEE
Confidence 3677885 58999986
No 79
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=50.21 E-value=48 Score=28.72 Aligned_cols=40 Identities=23% Similarity=0.434 Sum_probs=22.3
Q ss_pred CceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeE
Q 003442 764 GEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRF 810 (819)
Q Consensus 764 ~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI 810 (819)
++.|.+.... ..+...+|++. ....+.-+.++++ ||.|||
T Consensus 68 gd~a~~~~~~--~~~~~~~g~~~----~~~~~~~~v~~k~-~g~W~i 107 (107)
T PF14534_consen 68 GDTAVVRGRW--TFTWRGDGEPV----TIRGRFTSVWKKQ-DGKWRI 107 (107)
T ss_dssp TTEEEEEEEE--EEEETTTTEEE----EEEEEEEEEEEEE-TTEEEE
T ss_pred CCEEEEEEEE--EEEEecCCceE----EEEEEEEEEEEEe-CCEEEC
Confidence 4677776554 32333222111 1244566777777 579998
No 80
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=49.70 E-value=9.8 Score=41.57 Aligned_cols=53 Identities=23% Similarity=0.321 Sum_probs=36.4
Q ss_pred cchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC
Q 003442 88 SCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF 141 (819)
Q Consensus 88 D~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~ 141 (819)
|||.+|||...+.+.+|-|||.++-++- |+.-=.++.- .+=.++-.|++.|-+
T Consensus 34 nCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k-~~F~~iAtayeilkd 87 (329)
T KOG0722|consen 34 NCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESK-KLFVKIATAYEILKD 87 (329)
T ss_pred hHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhh-hhhhhhhcccccccc
Confidence 8999999999999999999998887664 4433333322 333444455555554
No 81
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=48.15 E-value=90 Score=25.39 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=40.4
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
.+.+.|+|+.++++-+.+++.. |...+ ++..+|.-.+.++++.+|.+.+++++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~---P~~~~-------a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD---PDNPE-------AWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS---TTHHH-------HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC---CCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5789999999999999999754 22333 3455566667788888888888888754
No 82
>PRK05685 fliS flagellar protein FliS; Validated
Probab=44.59 E-value=78 Score=30.95 Aligned_cols=88 Identities=23% Similarity=0.197 Sum_probs=68.3
Q ss_pred HHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhc-cCCCCchhHHHHHHHHhhhChhhHHhhhCCCCCcchHHHHHHHH
Q 003442 206 MALAECAIAKVAFEKNNVSQGFEALARAQCLLRSK-VSLGNMPLLSQIEESLEELAPACTLELLGMPHSPENAERRRGAI 284 (819)
Q Consensus 206 ~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~-~~la~p~lq~eI~~~L~~L~PyriLELLalPl~~e~~~Rr~ggL 284 (819)
-|+-++..|+++.+.++++...+.+.+|+.++.+= ..| +++--.+|-..|..|==|++-+|+.--...+ .++=...+
T Consensus 34 gai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sL-d~e~ggeiA~~L~~LY~y~~~~L~~A~~~~d-~~~l~ev~ 111 (132)
T PRK05685 34 GALSFLAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSL-DMEKGGEVAKNLSALYDYMIRRLLEANLRND-VQAIDEVE 111 (132)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhc-CCccccHHHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHH
Confidence 47779999999999999999999999999999533 344 2555579999999999999999987666542 45555557
Q ss_pred HHHHHHH--HcCc
Q 003442 285 AALRELI--RQGL 295 (819)
Q Consensus 285 ~lLr~~L--RgGi 295 (819)
.+|.++. |.++
T Consensus 112 ~il~~LreaW~~i 124 (132)
T PRK05685 112 GLLREIKEAWKQI 124 (132)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776 5444
No 83
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=41.32 E-value=1.8e+02 Score=28.47 Aligned_cols=67 Identities=18% Similarity=0.141 Sum_probs=54.6
Q ss_pred HHHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhc
Q 003442 171 CLLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSK 240 (819)
Q Consensus 171 ~LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~ 240 (819)
+++...|.++.++++-+.+|... +...+....++..+..+++...+.+++..+...+++|++..++.
T Consensus 80 ~~~~~~g~~~eA~~~~~~Al~~~---~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a 146 (168)
T CHL00033 80 LIHTSNGEHTKALEYYFQALERN---PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA 146 (168)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 56677899999999999999752 22346677888888999998889999999999999998887655
No 84
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=39.98 E-value=41 Score=27.44 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhc--ccCCchhHHHHHHHHhhCChhHHHHH
Q 003442 376 SKAKTICDCLIA--SESIDLKFEEAFCLFLLGQGTEAEAV 413 (819)
Q Consensus 376 ~~A~~~l~~L~~--~~~~Dv~lE~avC~LLLGq~~eA~~~ 413 (819)
.+|..+|+++.. ....++.+..|.|++-.|+.++|...
T Consensus 8 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 47 (68)
T PF14559_consen 8 DEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEEL 47 (68)
T ss_dssp HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 567777777643 35778999999999999999999865
No 85
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=39.28 E-value=5e+02 Score=31.80 Aligned_cols=51 Identities=12% Similarity=0.029 Sum_probs=34.8
Q ss_pred cCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 176 VGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 176 ~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
.|+++.+++.-+++++.... ..+. +..+|......+++..|.+.+++++++
T Consensus 89 ~g~~~~A~~~l~~~l~~~P~---~~~a-------~~~la~~l~~~g~~~~Ai~~l~~Al~l 139 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVNVC---QPED-------VLLVASVLLKSKQYATVADLAEQAWLA 139 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCC---ChHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 89999999999999864221 1232 344455555667777777788877774
No 86
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=38.70 E-value=84 Score=33.15 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=31.7
Q ss_pred EeeceeEEEEEEeeccCCCCceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEc-CCCceeEeeccc
Q 003442 745 FVLLQLTIVQADIISHGGVGEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKK-DDGTWRFCKGDI 815 (819)
Q Consensus 745 Y~l~~L~I~sV~v~~d~~~~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~-~dG~WKI~~~~v 815 (819)
|+=+++++..... ..+++.+.|..+|.. .+|++ ...+.|.|... .+|+|||.|-.|
T Consensus 112 y~~q~i~v~~~~~---~~~~~~~~V~t~ii~-----~~g~~-------~i~v~y~~~~~~~~g~WkVyDV~i 168 (211)
T PRK15117 112 YHGQTYQIAPEQP---LGDATIVPIRVTIID-----PNGRP-------PVRLDFQWRKNSQTGNWQAYDMIA 168 (211)
T ss_pred hCCceEEEeeccc---CCCCCEEEEEEEEEe-----cCCCC-------CEEEEEEEEECCCCCCceEEEEEE
Confidence 4445677764332 234567777655521 12211 23477777764 357899998655
No 87
>KOG3874 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.88 E-value=29 Score=40.01 Aligned_cols=61 Identities=21% Similarity=0.336 Sum_probs=40.8
Q ss_pred ccceeEeeccccceeeeeeeecCCccccccceeeeeeeeccCcceeecccccCccceeeccCcchh
Q 003442 26 LYGEVKVSGLGFGVERAFVRVSNPCCSRRTHVATLRYRLNAIDTRIVENAQTTATATVEIPVSCYQ 91 (819)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~iPlD~Yr 91 (819)
.+|++.+||||=|.. -|||+.------+-+-.+-||.| .++-+-|+-+-...+-||+|||+
T Consensus 156 yf~~~q~s~lGeG~k--tvkiG~l~T~vG~i~ls~aYRt~---l~f~~Taaq~e~~pIml~~dhf~ 216 (504)
T KOG3874|consen 156 YFENDQSSDLGEGKK--TVKIGELVTKVGNISLSLAYRTS---LHFEETAAQPEIAPIMLPVDHFE 216 (504)
T ss_pred EecCccccccccCce--eEEeeeeeeeeccEEEEEeeeee---eeeccccccccCCCeeeehhhcc
Confidence 468899999998865 35655443333445556778865 56666666555554449999996
No 88
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=35.67 E-value=1.8e+02 Score=28.17 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=65.5
Q ss_pred HHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhc-cCCCCchhHHHHHHHHhhhChhhHHhhhCCCCCcchHHHHHHHH
Q 003442 206 MALAECAIAKVAFEKNNVSQGFEALARAQCLLRSK-VSLGNMPLLSQIEESLEELAPACTLELLGMPHSPENAERRRGAI 284 (819)
Q Consensus 206 ~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~-~~la~p~lq~eI~~~L~~L~PyriLELLalPl~~e~~~Rr~ggL 284 (819)
-|+-.+..|+++.+.++++.....+.+|+.++..= +.| +++--.+|-+.|..|==|++-+|+.--+..+ .+.=...+
T Consensus 30 g~i~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~eL~~~L-d~e~ggeiA~nL~~LY~y~~~~L~~An~~~d-~~~l~ev~ 107 (124)
T TIGR00208 30 GCLKFIRLAAQAIENDDIERKNENLIKAQNIIQELNFTL-DREKNIELSASLGALYDYMYRRLVQANIKND-TSKLAEVE 107 (124)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhc-CCccchHHHHHHHHHHHHHHHHHHHHHhhCC-HHHHHHHH
Confidence 47778999999999999999999999999999532 344 2455579999999999999999987666542 34555556
Q ss_pred HHHHHHH
Q 003442 285 AALRELI 291 (819)
Q Consensus 285 ~lLr~~L 291 (819)
.+|.++.
T Consensus 108 ~~l~~Lr 114 (124)
T TIGR00208 108 GYVRDFR 114 (124)
T ss_pred HHHHHHH
Confidence 6666665
No 89
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=31.81 E-value=1.4e+02 Score=26.18 Aligned_cols=59 Identities=15% Similarity=0.038 Sum_probs=40.1
Q ss_pred HHHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 171 CLLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 171 ~LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
.++.+.|+++.++++-+.++......+...++.+.+|.++. ..+++..|...++++++.
T Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 47 EAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ-------ELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH-------HhCChHHHHHHHHHHHHH
Confidence 45778899999999999988744333445667766666653 345666666666666655
No 90
>PF05223 MecA_N: NTF2-like N-terminal transpeptidase domain; InterPro: IPR007887 The multiple antibiotic resistance of methicillin-resistant strains of Staphylococcus aureus (MRSA) has become a major clinical problem worldwide. Methicillin resistance in MRSA strains is due to the acquisition of the mecA gene via horizontal transfer from an unidentified species which encodes penicillin-binding protein 2a (PBP2a). The structure of the N-terminal domain from MecA is known [] Q53707 from SWISSPROT and is found to be similar to that found in NTF2 IPR002075 from INTERPRO. The length of the PBP2A N-terminal domain (which positions the transpeptidase active site more than 100A from the expected C terminus of the transmembrane anchor) suggests a possible structural role and potentially gives the transpeptidase domain substantial reach from the cell membrane. This domain seems unlikely to have an enzymatic function.; GO: 0046677 response to antibiotic; PDB: 1MWS_B 1MWT_B 1MWR_A 1MWU_A 1VQQ_A.
Probab=31.64 E-value=2.1e+02 Score=26.96 Aligned_cols=101 Identities=16% Similarity=0.243 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccchhhhhhhhHHHHHHHHHHHHHHCCceEEEeeceeEEEEEEeeccCCCCceeEE
Q 003442 690 LEEAEALVKQWQAIKAEALGPNHEVHSLSEALDESMLVQWEALADAAKARSCYWRFVLLQLTIVQADIISHGGVGEIAEI 769 (819)
Q Consensus 690 ~~~Ae~lV~~Wq~aKa~AlGp~H~i~~L~eIL~g~mLs~W~~~A~~l~~~~~Yw~Y~l~~L~I~sV~v~~d~~~~~~A~V 769 (819)
.+.|+.-+..|.. -+.+.+.+.++.+.-+......-.-+-++.|=.-...+|+|....+.. .+.+.++|
T Consensus 4 ~~~~~~f~~aw~~---------~dy~~m~~~~~~~~k~~~s~~~~~~~~~~i~~~l~~~~l~v~~~~~~~--~~~~~~~~ 72 (118)
T PF05223_consen 4 EETAEAFLEAWEK---------GDYAAMYELTSDPSKSQYSKEDFVERYQNIYEGLGAENLKVEAEKVKK--DEDDTATV 72 (118)
T ss_dssp -HHHHHHHHHHHT---------T-HHHHHHTB-HHHHHHHHHHHHHTHHHHHHHHHT--EEEEEEEEEEE--CCTTEEEE
T ss_pred HHHHHHHHHHHHc---------CCHHHHHHhhchhhhccccHHHHHHHHHHHHhhCCccceEEEecccee--cCCCceEE
Confidence 4677788888875 344556667777774443333222222333333344566664334332 24567888
Q ss_pred EEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEe
Q 003442 770 EAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFC 811 (819)
Q Consensus 770 eA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~ 811 (819)
..++ +-.+-.++ . -+|.....|++.++ .|||.
T Consensus 73 ~~~~--~~~t~~g~-~------~~~~~~~~l~~~~~-~W~V~ 104 (118)
T PF05223_consen 73 PYTV--TMDTPAGG-I------WTYNYTLTLVKEDD-DWKVD 104 (118)
T ss_dssp EEEE--EEEETTEE-E-------EEEEEEEEEEETT-CEEE-
T ss_pred EEEE--EEEeCCCC-c------eeeEEEEEEEecCC-cEEEE
Confidence 7777 43343222 1 37778889999865 69984
No 91
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=31.36 E-value=1e+02 Score=21.67 Aligned_cols=29 Identities=17% Similarity=0.168 Sum_probs=24.3
Q ss_pred HHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 208 LAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 208 LA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
=++..+|.-.+..+++.+|.+.+++++++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45777888889999999999999999876
No 92
>PRK10069 3-phenylpropionate dioxygenase subunit beta; Provisional
Probab=31.34 E-value=2.5e+02 Score=28.76 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=26.1
Q ss_pred CceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEeecccc
Q 003442 764 GEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKGDIQ 816 (819)
Q Consensus 764 ~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~~~~v~ 816 (819)
++.|+|++.+.- +...++. ....-..+..+.|++.+ |+|||..=.|.
T Consensus 122 ~d~a~vrS~~~v---~~~~~~~--~~~~~~G~y~D~l~r~~-~gwrI~~R~v~ 168 (183)
T PRK10069 122 PDEFAVRSNFLL---YRSRGER--DEDFLVGRREDVLRREG-DGWRLARRRIV 168 (183)
T ss_pred CCEEEEEEEEEE---EEEcCCC--ceEEEEEEEEEEEEEcC-CEEEEEEEEEE
Confidence 467888887621 1111111 11122334556799865 68999986664
No 93
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=30.85 E-value=45 Score=24.37 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCc
Q 003442 691 EEAEALVKQWQAIKAEALGPNH 712 (819)
Q Consensus 691 ~~Ae~lV~~Wq~aKa~AlGp~H 712 (819)
++|+.+.++=+.+..+.|||+|
T Consensus 19 ~~A~~~~~~al~~~~~~~G~~H 40 (42)
T PF13374_consen 19 EEALELLEEALEIRERLLGPDH 40 (42)
T ss_dssp HHHHHHHHHHHHHH--------
T ss_pred chhhHHHHHHHHHHHHHhcccc
No 94
>PF00866 Ring_hydroxyl_B: Ring hydroxylating beta subunit; InterPro: IPR000391 The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the substrate by nonhaem iron-containing dioxygenases. These enzymes consist of two or three soluble proteins that interact to form an electron-transport chain that transfers electrons from reduced nucleotides (NADH) via flavin and [2Fe-2S] redox centres to a terminal dioxygenase []. Aromatic-ring-hydroxylating dioxygenases oxidise aromatic hydrocarbons and related compounds to cis-arene diols. These enzymes utilise a mononuclear non-haem iron centre to catalyse the addition of dioxygen to their respective substrates. Naphthalene 1,2-dioxygenase (NDO) from Pseudomonas sp. NCIB9816-4 has a domain structure and iron coordination of the Rieske domain is very similar to that of the cytochrome bc1 domain. The active-site iron centre of one of the alpha subunits is directly connected by hydrogen bonds through a single amino acid, Asp205, to the Rieske [2Fe-2S] centre in a neighbouring alpha subunit. This may be the main route for electron transfer [].; GO: 0003824 catalytic activity, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 1ULJ_B 1ULI_D 1WQL_B 2GBX_D 2GBW_B 2XSH_D 2XR8_X 2XRX_V 2YFL_B 2YFJ_J ....
Probab=30.64 E-value=2.3e+02 Score=27.84 Aligned_cols=78 Identities=12% Similarity=0.117 Sum_probs=41.8
Q ss_pred HHHHHHHHHHCCceE-----EEeeceeEEEEEEeeccCCCCceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEc
Q 003442 729 WEALADAAKARSCYW-----RFVLLQLTIVQADIISHGGVGEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKK 803 (819)
Q Consensus 729 W~~~A~~l~~~~~Yw-----~Y~l~~L~I~sV~v~~d~~~~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~ 803 (819)
..+|+..++. +..| .++.|-|+.. .|... .+++.++|.+.+ ...-...+ .+...| ..+.+|.|++.
T Consensus 54 L~~RV~rl~~-~~~~se~P~srtrh~vsnv--~v~~~-~~~~~~~v~s~f--~v~r~r~~-~~~~~~--~G~~~d~lr~~ 124 (145)
T PF00866_consen 54 LEDRVERLRT-GRAWSEDPPSRTRHFVSNV--RVEET-EDGGEIEVRSNF--LVYRSRLD-GDQDLF--AGRREDVLRRT 124 (145)
T ss_dssp HHHHHHHHHS-TTHGGGSS--EEEEEEEEE--EEEEE-SSTTEEEEEEEE--EEEEEETT-TEEEEE--EEEEEEEEEEE
T ss_pred HHHHHHHHhc-CCccccCCCceeEEEEcCE--EEEEe-cCCCEEEEEEEE--EEEEEcCC-CcEEEE--EEEEEEEEEEe
Confidence 4667777754 4444 2333554444 23221 245677777666 32112222 111223 45789999998
Q ss_pred CCCceeEeecccc
Q 003442 804 DDGTWRFCKGDIQ 816 (819)
Q Consensus 804 ~dG~WKI~~~~v~ 816 (819)
++ +|||..=.|+
T Consensus 125 ~~-~~ki~~R~v~ 136 (145)
T PF00866_consen 125 DG-GLKIARRRVV 136 (145)
T ss_dssp SS-SEEEEEEEEE
T ss_pred CC-EEEEEEEEEE
Confidence 75 6999875553
No 95
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=28.36 E-value=1.7e+02 Score=24.15 Aligned_cols=56 Identities=20% Similarity=0.141 Sum_probs=41.5
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLL 237 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL 237 (819)
++...+.|+.+++..+..++.... |+ -++...|.-.+..+++..|.+.|++++++=
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-----~~-----~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-----DP-----ELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-----cc-----hhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 567889999999999999974221 22 235556666677888988999999988654
No 96
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=27.95 E-value=5.9e+02 Score=33.31 Aligned_cols=40 Identities=13% Similarity=-0.104 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhhcc--cCCchhHHHHHHHHhhCChhHHHHH
Q 003442 374 LISKAKTICDCLIAS--ESIDLKFEEAFCLFLLGQGTEAEAV 413 (819)
Q Consensus 374 lI~~A~~~l~~L~~~--~~~Dv~lE~avC~LLLGq~~eA~~~ 413 (819)
-..+|...|++.... ...+++...|.|++-.|+.++|...
T Consensus 284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~ 325 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQ 325 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345777777776432 3457788999999999999999865
No 97
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=27.76 E-value=1.3e+02 Score=21.51 Aligned_cols=31 Identities=23% Similarity=0.182 Sum_probs=25.1
Q ss_pred HHHhHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 003442 207 ALAECAIAKVAFEKNNVSQGFEALARAQCLL 237 (819)
Q Consensus 207 ALA~~elare~~e~~~~~~~~e~Le~al~LL 237 (819)
|-++..+|...+..+++..|.+.+++|+++=
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 3467778888889999999999999999863
No 98
>TIGR03231 anthran_1_2_B anthranilate 1,2-dioxygenase, small subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the small subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase small subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=27.22 E-value=2.2e+02 Score=28.56 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=16.6
Q ss_pred eEEEEEEEEcCCCceeEeecccc
Q 003442 794 YKIRYVLRKKDDGTWRFCKGDIQ 816 (819)
Q Consensus 794 y~vRY~L~r~~dG~WKI~~~~v~ 816 (819)
...+|.|++.+ |+|||..=.|+
T Consensus 119 g~~~~~Lrr~~-~g~kI~~R~i~ 140 (155)
T TIGR03231 119 GHATYVLKPTG-DSWLIRRKHSV 140 (155)
T ss_pred EEEEEEEEEeC-CEEEEEEEEEE
Confidence 35678899865 57999987665
No 99
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=27.11 E-value=98 Score=25.35 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=38.9
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
++.+.|+|+.+++.=.++++.. |...++...++++|...+ .++.+|.+.+++++++
T Consensus 12 ~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~------~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 12 IYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLG------KDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTT------THHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhC------ccHHHHHHHHHHHHHc
Confidence 3566899999999999999742 334555555555555443 1677788888888775
No 100
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=26.98 E-value=8.1e+02 Score=29.10 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhc--ccCCchhHHHHHHHHhhCChhHHHHH
Q 003442 376 SKAKTICDCLIA--SESIDLKFEEAFCLFLLGQGTEAEAV 413 (819)
Q Consensus 376 ~~A~~~l~~L~~--~~~~Dv~lE~avC~LLLGq~~eA~~~ 413 (819)
.+|...++.+.. ....+....++.+++..|+.++|...
T Consensus 244 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 283 (899)
T TIGR02917 244 EEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARET 283 (899)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHH
Confidence 444444444421 12334555666666667777766543
No 101
>cd00667 ring_hydroxylating_dioxygenases_beta Ring hydroxylating dioxygenase beta subunit. This subunit has a similar structure to NTF-2, Ketosteroid isomerase and scytalone dehydratase.The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the substrate by nonheme iron-containing dioxygenases. These enzymes consist of two or three soluble proteins that interact to form an electron-transport chain that transfers electrons from reduced nucleotides (NADH) via flavin and [2Fe-2S] redox centers to a terminal dioxygenase. Aromatic-ring-hydroxylating dioxygenases oxidize aromatic hydrocarbons and related compounds to cis-arene diols. These enzymes utilize a mononuclear non-heme iron center to catalyze the addition of dioxygen to their respective substrates. The active site of these enzymes however is in the alpha sub-unit. No functional role has been attributed to the beta sub-unit except for a structural role.
Probab=26.50 E-value=3.7e+02 Score=26.24 Aligned_cols=47 Identities=11% Similarity=-0.000 Sum_probs=25.9
Q ss_pred CceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEeecccc
Q 003442 764 GEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKGDIQ 816 (819)
Q Consensus 764 ~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~~~~v~ 816 (819)
++.|.+.+.+. ..-+..+ . .+..-+....+++++.+ |+|||..=.|+
T Consensus 100 ~d~a~~~s~~~--v~~~~~~--~-~~~~~~g~~~d~~~r~~-~~wri~~R~~~ 146 (160)
T cd00667 100 GGEIEVRSNFV--VVRTRLD--G-ESDVFAGGRYDDLRRSE-DGLRIASRRVV 146 (160)
T ss_pred CCEEEEEEEEE--EEEEcCC--C-eEEEEEEEEEEEEEEcC-CeEEEEEEEEE
Confidence 56788877652 1112111 1 12111335677888876 58999876553
No 102
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=26.25 E-value=1.3e+02 Score=24.52 Aligned_cols=39 Identities=15% Similarity=0.098 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhcc--cCCchhHHHHHHHHhhCChhHHHHH
Q 003442 375 ISKAKTICDCLIAS--ESIDLKFEEAFCLFLLGQGTEAEAV 413 (819)
Q Consensus 375 I~~A~~~l~~L~~~--~~~Dv~lE~avC~LLLGq~~eA~~~ 413 (819)
..+|...|+++... ...+..+..|.|.+-.|+.++|..+
T Consensus 13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 53 (65)
T PF13432_consen 13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAY 53 (65)
T ss_dssp HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56788888888642 3558899999999999999999865
No 103
>TIGR03232 benzo_1_2_benB benzoate 1,2-dioxygenase, small subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family should all act on benzoate, but several have additional known activities on various benozate analogs. Some members actually may be named more suitably according to such alternate an activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=26.21 E-value=3.6e+02 Score=27.13 Aligned_cols=21 Identities=10% Similarity=0.052 Sum_probs=16.2
Q ss_pred EEEEEEEEcCCCceeEeecccc
Q 003442 795 KIRYVLRKKDDGTWRFCKGDIQ 816 (819)
Q Consensus 795 ~vRY~L~r~~dG~WKI~~~~v~ 816 (819)
..+|.|++.+ |+|||..=.|+
T Consensus 120 ~~~~~Lr~~~-~~~ki~~r~v~ 140 (155)
T TIGR03232 120 MSRYTIDFSG-ESPKIKSKYVV 140 (155)
T ss_pred EEEEEEEEcC-CeeEEEEEEEE
Confidence 5678999864 67999987665
No 104
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=25.87 E-value=1.1e+02 Score=22.72 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=24.1
Q ss_pred HhHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 003442 209 AECAIAKVAFEKNNVSQGFEALARAQCLL 237 (819)
Q Consensus 209 A~~elare~~e~~~~~~~~e~Le~al~LL 237 (819)
|+..+|+-....+++.+|.+..+++|.+=
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57788888899999999999999988554
No 105
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=25.01 E-value=1.5e+02 Score=33.94 Aligned_cols=61 Identities=20% Similarity=0.295 Sum_probs=49.6
Q ss_pred HHHHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHH
Q 003442 170 LCLLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQC 235 (819)
Q Consensus 170 L~LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~ 235 (819)
|.|-|--.|.+-+++.++++.... .++.-.-+|==|||+|.......++..+-+.|.+|++
T Consensus 148 l~IYQ~treW~KAId~A~~L~k~~-----~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 148 LNIYQATREWEKAIDVAERLVKLG-----GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHcC-----CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 345566789999999999998642 2556667888899999999999999888888888876
No 106
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=24.58 E-value=80 Score=37.07 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=42.3
Q ss_pred eccCcchhccCCCCCCChHHHHHHH--HHHhhhhhccCCCHHHHHHHHHHHHHHHHhhcC---chhhh
Q 003442 84 EIPVSCYQIIGVPNQAEKDEIVKSV--MDLKRAEIEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYA 146 (819)
Q Consensus 84 ~iPlD~YriLGv~~~a~~d~I~rA~--~~~~~~~p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~ 146 (819)
.==.|||.|||++..++.++|.+|| ..+...|-..-.|+.--.++=.=.-.||..|.+ +.+|+
T Consensus 370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~d 437 (486)
T KOG0550|consen 370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFD 437 (486)
T ss_pred hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcc
Confidence 3358999999999999999999998 455566655666733333333333355666665 45565
No 107
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=23.57 E-value=2.2e+02 Score=28.52 Aligned_cols=89 Identities=20% Similarity=0.167 Sum_probs=67.7
Q ss_pred HHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhccCCCCchhHHHHHHHHhhhChhhHHhhhCCCCCcchHHHHHHHHH
Q 003442 206 MALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKVSLGNMPLLSQIEESLEELAPACTLELLGMPHSPENAERRRGAIA 285 (819)
Q Consensus 206 ~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~~~la~p~lq~eI~~~L~~L~PyriLELLalPl~~e~~~Rr~ggL~ 285 (819)
-||-++..|+.++|+++++..-+.+.+++..+.+=...-+++-=.+|-..|..|==|.+=.|+---+.. +...=.+.+.
T Consensus 30 g~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL~~~Ld~E~Ggeia~nL~~LY~y~~~rL~~ANl~n-d~~~i~eV~~ 108 (132)
T COG1516 30 GALKFLKRAKEAIEQEDIEEKNESIDKAIDIITELRASLDYEKGGEIAQNLDALYDYMVRRLVQANLKN-DASKIDEVIG 108 (132)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCHhhcchHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHH
Confidence 478899999999999999999999999999997443332345447999999999999888888776643 2344445477
Q ss_pred HHHHHH--HcCc
Q 003442 286 ALRELI--RQGL 295 (819)
Q Consensus 286 lLr~~L--RgGi 295 (819)
+|+++. |-++
T Consensus 109 ll~~l~eaW~ei 120 (132)
T COG1516 109 LLRELREAWKEI 120 (132)
T ss_pred HHHHHHHHHHHH
Confidence 777777 6554
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=22.79 E-value=2.4e+02 Score=27.34 Aligned_cols=75 Identities=11% Similarity=-0.005 Sum_probs=36.3
Q ss_pred HHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhccCCCCchhHHHH
Q 003442 173 LQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKVSLGNMPLLSQI 252 (819)
Q Consensus 173 LqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~~~la~p~lq~eI 252 (819)
++..|+++.++..=+..+.... -..+...-+++ -....+++..|.+.+++++++--..... ..+++.+
T Consensus 68 ~~~~g~~~~A~~~y~~Al~l~p---~~~~a~~~lg~-------~l~~~g~~~eAi~~~~~Al~~~p~~~~~--~~~~~~~ 135 (144)
T PRK15359 68 WMMLKEYTTAINFYGHALMLDA---SHPEPVYQTGV-------CLKMMGEPGLAREAFQTAIKMSYADASW--SEIRQNA 135 (144)
T ss_pred HHHHhhHHHHHHHHHHHHhcCC---CCcHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhCCCChHH--HHHHHHH
Confidence 4556777777666666665211 11233332222 2233456666666666666544222111 2344555
Q ss_pred HHHHhhh
Q 003442 253 EESLEEL 259 (819)
Q Consensus 253 ~~~L~~L 259 (819)
+..|+.|
T Consensus 136 ~~~l~~~ 142 (144)
T PRK15359 136 QIMVDTL 142 (144)
T ss_pred HHHHHHH
Confidence 5555543
No 109
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=21.47 E-value=2.2e+02 Score=32.09 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=41.2
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLR 238 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~ 238 (819)
++...|.++.++...+.+|+.... .+.+|.-+|.-.+..++|..|...+++|+++--
T Consensus 45 ~~~~~g~~~eAl~~~~~Al~l~P~----------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 45 ANIKLGNFTEAVADANKAIELDPS----------LAKAYLRKGTACMKLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcC----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 345689999999999999864221 133455566666677889899999999988663
No 110
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=21.35 E-value=4.5e+02 Score=25.88 Aligned_cols=70 Identities=17% Similarity=0.156 Sum_probs=47.1
Q ss_pred HHHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhccCC
Q 003442 171 CLLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKVSL 243 (819)
Q Consensus 171 ~LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~~~l 243 (819)
.++...|+|+.++++-++.++-. +...+.....+.++..+++-...++++..+-..+++|++.+++...+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 80 IIYASNGEHDKALEYYHQALELN---PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 44567899999999988888632 11234444556666666666666677777777788888777655444
No 111
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=21.02 E-value=2.6e+02 Score=21.76 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=34.3
Q ss_pred HHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 003442 173 LQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLL 237 (819)
Q Consensus 173 LqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL 237 (819)
+.+.|+++.++++-+..++..... .++ +..+|.-.+..+++..|.+.+++++++.
T Consensus 10 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 64 (100)
T cd00189 10 YYKLGDYDEALEYYEKALELDPDN---ADA-------YYNLAAAYYKLGKYEEALEDYEKALELD 64 (100)
T ss_pred HHHHhcHHHHHHHHHHHHhcCCcc---HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455799999999999988643221 123 3334444444566666777777776654
No 112
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=20.63 E-value=1.8e+02 Score=31.40 Aligned_cols=57 Identities=23% Similarity=0.187 Sum_probs=44.9
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLR 238 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~ 238 (819)
++.+.|.++.+++..+++++-... | +.++..+|.-.++.+++.+|...+++++.+..
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~-----~-----~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPD-----D-----AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-----C-----cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 568899999999999999974321 2 44566777778889999999889988887653
No 113
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.50 E-value=96 Score=30.06 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=34.7
Q ss_pred hccCCCCCCChHHHHHHHH-HHhhhhhccCCCHHHHHHHHHHHHHHHHhhc
Q 003442 91 QIIGVPNQAEKDEIVKSVM-DLKRAEIEEGYTMDAFMSRQDVLMDVRDKLL 140 (819)
Q Consensus 91 riLGv~~~a~~d~I~rA~~-~~~~~~p~~GyS~~al~aR~~LL~~A~d~L~ 140 (819)
.||||+|+++++-|+.|+. --+.+-|+.|=|+..- ++ +.+|.|.|.
T Consensus 60 lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlA-sK---INEAKdlLe 106 (112)
T KOG0723|consen 60 LILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLA-SK---INEAKDLLE 106 (112)
T ss_pred HHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHH-HH---HHHHHHHHh
Confidence 5999999999999999984 4456679999998742 22 446666654
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=20.25 E-value=3e+02 Score=25.22 Aligned_cols=74 Identities=18% Similarity=0.078 Sum_probs=47.1
Q ss_pred HHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhccCCCCchhHHHH
Q 003442 173 LQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKVSLGNMPLLSQI 252 (819)
Q Consensus 173 LqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~~~la~p~lq~eI 252 (819)
+...|+++.++++-++.+... +...|+....| .-.+..+++..|...+++++++-.....+ ..+...+
T Consensus 61 ~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~la-------~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~~~~~ 128 (135)
T TIGR02552 61 CQMLKEYEEAIDAYALAAALD---PDDPRPYFHAA-------ECLLALGEPESALKALDLAIEICGENPEY--SELKERA 128 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---CCChHHHHHHH-------HHHHHcCCHHHHHHHHHHHHHhccccchH--HHHHHHH
Confidence 335589999998888887642 22234443333 33344578888888999999887655444 4556666
Q ss_pred HHHHhh
Q 003442 253 EESLEE 258 (819)
Q Consensus 253 ~~~L~~ 258 (819)
...|+-
T Consensus 129 ~~~~~~ 134 (135)
T TIGR02552 129 EAMLES 134 (135)
T ss_pred HHHHhc
Confidence 665553
No 115
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=20.11 E-value=1.7e+03 Score=27.67 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhc--ccCCchhHHHHHHHHhhCChhHHHHH
Q 003442 376 SKAKTICDCLIA--SESIDLKFEEAFCLFLLGQGTEAEAV 413 (819)
Q Consensus 376 ~~A~~~l~~L~~--~~~~Dv~lE~avC~LLLGq~~eA~~~ 413 (819)
.+|...|++... -...++.+.+|.+++=+|+.++|+..
T Consensus 410 ~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~ 449 (765)
T PRK10049 410 RAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVL 449 (765)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 677777766643 23456888999999999999999866
Done!