Query 003442
Match_columns 819
No_of_seqs 109 out of 117
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 01:20:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2och_A Hypothetical protein DN 97.7 4.6E-05 1.6E-09 64.7 5.4 64 82-148 3-70 (73)
2 2dn9_A DNAJ homolog subfamily 97.7 5.1E-05 1.7E-09 65.1 5.5 64 86-149 6-73 (79)
3 2ctp_A DNAJ homolog subfamily 97.6 0.00013 4.4E-09 62.5 7.1 63 86-149 6-72 (78)
4 2ej7_A HCG3 gene; HCG3 protein 97.5 0.00019 6.4E-09 62.0 6.9 64 86-149 8-76 (82)
5 2yua_A Williams-beuren syndrom 97.5 8.5E-05 2.9E-09 66.8 4.8 64 86-149 16-83 (99)
6 2cug_A Mkiaa0962 protein; DNAJ 97.5 0.00012 4.1E-09 64.4 5.6 66 83-149 13-82 (88)
7 2ctr_A DNAJ homolog subfamily 97.4 0.00018 6E-09 63.3 5.7 63 86-149 6-72 (88)
8 1hdj_A Human HSP40, HDJ-1; mol 97.4 0.00023 7.9E-09 60.8 5.8 62 87-149 3-68 (77)
9 2dmx_A DNAJ homolog subfamily 97.3 0.0002 6.7E-09 63.3 5.3 63 87-149 9-76 (92)
10 2o37_A Protein SIS1; HSP40, J- 97.3 0.00023 7.9E-09 63.1 5.2 64 82-148 3-70 (92)
11 2lgw_A DNAJ homolog subfamily 97.3 0.00032 1.1E-08 63.3 5.9 64 87-150 2-70 (99)
12 1wjz_A 1700030A21RIK protein; 97.2 0.00036 1.2E-08 61.6 5.8 65 86-150 15-89 (94)
13 2ctq_A DNAJ homolog subfamily 97.2 0.00024 8.2E-09 65.3 4.6 66 86-151 19-88 (112)
14 1bq0_A DNAJ, HSP40; chaperone, 97.2 0.00016 5.3E-09 65.4 3.2 65 87-151 3-71 (103)
15 2ctw_A DNAJ homolog subfamily 97.2 0.00045 1.5E-08 63.2 5.8 63 86-148 16-82 (109)
16 3hho_A CO-chaperone protein HS 97.0 0.0025 8.4E-08 63.1 10.2 64 86-149 3-77 (174)
17 2qsa_A DNAJ homolog DNJ-2; J-d 97.0 0.00086 2.9E-08 61.1 6.4 65 85-149 13-85 (109)
18 3apq_A DNAJ homolog subfamily 96.7 0.0012 4E-08 65.2 4.9 63 87-149 2-68 (210)
19 2l6l_A DNAJ homolog subfamily 96.6 0.0017 5.8E-08 62.6 5.1 63 87-149 10-82 (155)
20 1fpo_A HSC20, chaperone protei 96.5 0.051 1.7E-06 53.6 15.0 63 87-149 1-74 (171)
21 2ys8_A RAB-related GTP-binding 96.3 0.0033 1.1E-07 55.6 4.4 55 86-141 26-81 (90)
22 2guz_A Mitochondrial import in 96.1 0.0056 1.9E-07 51.9 5.0 51 87-141 14-66 (71)
23 3bvo_A CO-chaperone protein HS 96.1 0.078 2.7E-06 53.9 14.2 63 87-149 43-116 (207)
24 1gh6_A Large T antigen; tumor 95.5 0.0036 1.2E-07 58.2 1.4 56 87-146 8-69 (114)
25 3lz8_A Putative chaperone DNAJ 95.4 0.0027 9.2E-08 68.7 0.0 61 87-148 28-92 (329)
26 1faf_A Large T antigen; J doma 95.3 0.016 5.4E-07 50.2 4.7 51 87-141 11-64 (79)
27 2pf4_E Small T antigen; PP2A, 95.3 0.0041 1.4E-07 61.9 1.0 57 87-147 11-73 (174)
28 1iur_A KIAA0730 protein; DNAJ 95.0 0.012 4.1E-07 52.2 3.2 55 87-141 16-72 (88)
29 1n4c_A Auxilin; four helix bun 94.2 0.022 7.5E-07 57.1 3.0 55 87-141 117-175 (182)
30 3apo_A DNAJ homolog subfamily 94.0 0.012 4.2E-07 68.9 0.8 64 86-149 20-87 (780)
31 3ag7_A Putative uncharacterize 93.0 0.12 4.2E-06 47.2 5.6 55 87-142 41-103 (106)
32 2qwo_B Putative tyrosine-prote 92.0 0.22 7.5E-06 44.7 5.8 54 87-140 33-90 (92)
33 3uo3_A J-type CO-chaperone JAC 91.3 0.085 2.9E-06 52.5 2.6 61 86-149 10-81 (181)
34 2guz_B Mitochondrial import in 91.1 0.41 1.4E-05 40.4 6.2 35 88-122 5-43 (65)
35 2y4t_A DNAJ homolog subfamily 81.8 2 6.7E-05 44.7 6.4 61 87-147 382-449 (450)
36 3ma5_A Tetratricopeptide repea 77.0 6.2 0.00021 33.3 7.0 77 172-261 16-92 (100)
37 3soy_A NTF2-like superfamily p 76.4 3.9 0.00013 38.3 6.0 46 764-813 86-131 (145)
38 2cw9_A Translocase of inner mi 75.2 13 0.00046 36.9 9.9 96 712-814 76-186 (194)
39 4gb5_A Uncharacterized protein 74.7 6 0.00021 36.7 6.8 65 745-815 74-139 (159)
40 3qk9_A Mitochondrial import in 69.6 25 0.00085 36.1 10.5 101 712-814 99-214 (222)
41 2gxf_A Hypothetical protein YY 67.6 17 0.00057 33.0 8.0 19 793-811 99-117 (142)
42 2vgx_A Chaperone SYCD; alterna 66.2 15 0.00052 33.3 7.4 77 172-260 64-140 (148)
43 3k7c_A Putative NTF2-like tran 65.8 15 0.0005 34.3 7.1 45 748-811 68-112 (114)
44 2yhc_A BAMD, UPF0169 lipoprote 64.9 97 0.0033 29.4 17.7 112 171-292 12-124 (225)
45 2xcb_A PCRH, regulatory protei 64.8 20 0.00069 31.6 7.8 77 172-260 61-137 (142)
46 3fka_A Uncharacterized NTF-2 l 64.8 11 0.00039 34.1 6.2 45 749-813 71-115 (120)
47 3gw4_A Uncharacterized protein 62.3 18 0.00062 32.8 7.2 84 172-262 116-199 (203)
48 2v5f_A Prolyl 4-hydroxylase su 62.1 14 0.00049 31.8 6.1 35 207-241 5-39 (104)
49 3b8l_A Uncharacterized protein 60.5 37 0.0013 31.4 9.1 46 764-815 104-149 (163)
50 3hx8_A MLR2180 protein, putati 60.0 27 0.00092 30.2 7.6 42 764-812 77-120 (129)
51 2kat_A Uncharacterized protein 57.9 36 0.0012 28.5 7.9 77 172-261 28-104 (115)
52 4i4k_A Uncharacterized protein 57.5 64 0.0022 29.5 10.1 20 795-815 118-137 (143)
53 3bb9_A Putative orphan protein 57.3 47 0.0016 30.2 9.1 15 690-704 29-43 (148)
54 3blz_A NTF2-like protein of un 57.0 17 0.00059 32.7 5.9 43 752-813 78-120 (128)
55 3rob_A Uncharacterized conserv 56.6 44 0.0015 31.0 8.8 47 764-814 87-133 (139)
56 3qww_A SET and MYND domain-con 56.1 37 0.0013 37.5 9.6 82 171-258 348-432 (433)
57 3gzr_A Uncharacterized protein 54.5 33 0.0011 31.9 7.6 20 795-815 108-127 (146)
58 3d9r_A Ketosteroid isomerase-l 52.4 45 0.0016 29.0 7.8 19 795-813 110-128 (135)
59 2b1x_B Naphthalene dioxygenase 51.7 64 0.0022 30.5 9.3 63 746-816 95-157 (172)
60 3gwr_A Putative calcium/calmod 51.1 67 0.0023 29.8 9.1 42 764-813 82-123 (144)
61 3qwp_A SET and MYND domain-con 50.8 48 0.0016 36.4 9.4 65 172-240 338-404 (429)
62 3a76_A Gamma-hexachlorocyclohe 50.3 59 0.002 30.8 8.8 63 744-815 89-151 (176)
63 2rfr_A Uncharacterized protein 49.4 24 0.00081 32.1 5.6 19 796-815 121-139 (155)
64 3ro3_A PINS homolog, G-protein 48.8 20 0.00069 30.4 4.8 65 172-240 98-162 (164)
65 3duk_A NTF2-like protein of un 48.7 40 0.0014 30.7 7.0 44 751-813 76-119 (125)
66 3ef8_A Putative scyalone dehyd 44.6 1.1E+02 0.0037 28.0 9.4 63 744-815 68-130 (150)
67 3upv_A Heat shock protein STI1 43.8 78 0.0027 26.7 7.8 77 172-258 47-124 (126)
68 3cu3_A Domain of unknown funct 43.6 58 0.002 30.4 7.5 21 794-815 115-135 (172)
69 3ejv_A Uncharacterized protein 43.0 1.5E+02 0.0051 28.5 10.5 19 796-815 152-170 (179)
70 3gzx_B Biphenyl dioxygenase su 42.4 91 0.0031 30.7 8.9 23 794-816 148-171 (186)
71 2xev_A YBGF; tetratricopeptide 41.9 1E+02 0.0035 25.6 8.2 59 172-237 48-106 (129)
72 3gyz_A Chaperone protein IPGC; 41.1 63 0.0022 29.9 7.2 72 172-259 79-150 (151)
73 2chc_A Protein RV3472; hypothe 40.7 58 0.002 30.2 7.0 46 764-815 84-129 (170)
74 2yhc_A BAMD, UPF0169 lipoprote 39.4 1.4E+02 0.0048 28.3 9.6 133 102-237 21-177 (225)
75 2qgu_A Probable signal peptide 39.0 28 0.00096 35.0 4.7 54 744-815 115-168 (211)
76 3eby_A Beta subunit of A putat 38.7 99 0.0034 29.1 8.3 22 794-816 128-149 (163)
77 3f7s_A Uncharacterized NTF2-li 38.4 88 0.003 27.9 7.6 19 794-813 105-123 (142)
78 3ro3_A PINS homolog, G-protein 38.4 42 0.0014 28.3 5.2 65 172-240 58-122 (164)
79 4gco_A Protein STI-1; structur 36.5 1E+02 0.0036 26.8 7.7 55 172-236 56-110 (126)
80 3iqc_A FLIS, flagellar protein 36.4 51 0.0017 31.0 5.8 89 205-295 34-125 (131)
81 3gw4_A Uncharacterized protein 36.4 99 0.0034 27.8 7.6 65 172-240 35-99 (203)
82 3n71_A Histone lysine methyltr 36.3 84 0.0029 35.2 8.5 65 172-240 360-426 (490)
83 2xev_A YBGF; tetratricopeptide 36.0 74 0.0025 26.5 6.3 58 172-236 11-68 (129)
84 3qky_A Outer membrane assembly 35.4 52 0.0018 31.7 5.9 66 172-237 157-225 (261)
85 1uli_B Biphenyl dioxygenase sm 35.3 1.1E+02 0.0038 29.7 8.3 20 797-816 152-172 (187)
86 2rgq_A Domain of unknown funct 34.7 1.3E+02 0.0044 27.2 8.2 20 795-815 106-125 (144)
87 3rkv_A Putative peptidylprolyl 34.0 1.1E+02 0.0039 27.0 7.6 55 173-237 73-127 (162)
88 2ux0_A Calcium-calmodulin depe 33.3 1.1E+02 0.0039 27.2 7.5 19 794-813 114-132 (143)
89 4gcn_A Protein STI-1; structur 32.6 68 0.0023 28.0 5.7 61 172-236 51-112 (127)
90 3k9i_A BH0479 protein; putativ 32.2 79 0.0027 26.7 5.9 56 172-237 36-91 (117)
91 1hxi_A PEX5, peroxisome target 31.7 92 0.0032 26.9 6.4 55 172-236 26-80 (121)
92 2ho1_A Type 4 fimbrial biogene 31.6 3.2E+02 0.011 25.4 15.7 54 173-236 47-100 (252)
93 3sz7_A HSC70 cochaperone (SGT) 31.5 90 0.0031 27.8 6.4 57 172-238 54-110 (164)
94 3h51_A Putative calcium/calmod 30.4 1.4E+02 0.0048 27.3 7.7 18 686-703 15-32 (156)
95 1na3_A Designed protein CTPR2; 30.3 1.2E+02 0.004 23.5 6.3 55 172-236 18-72 (91)
96 3mkr_A Coatomer subunit epsilo 30.3 2.5E+02 0.0086 28.1 10.3 41 373-413 180-222 (291)
97 1wql_B Ethylbenzene dioxygenas 30.3 1.2E+02 0.004 29.5 7.5 19 797-816 151-171 (186)
98 4gcn_A Protein STI-1; structur 29.7 53 0.0018 28.7 4.5 33 204-236 5-37 (127)
99 2lni_A Stress-induced-phosphop 28.9 1.4E+02 0.0049 24.4 6.9 55 172-236 25-79 (133)
100 4i17_A Hypothetical protein; T 28.8 1.6E+02 0.0054 27.4 7.9 45 172-219 126-172 (228)
101 2fbn_A 70 kDa peptidylprolyl i 27.7 1.8E+02 0.006 26.7 8.0 65 172-236 47-117 (198)
102 2hr2_A Hypothetical protein; a 27.5 1.9E+02 0.0066 27.8 8.3 89 171-259 65-156 (159)
103 3vtx_A MAMA; tetratricopeptide 27.4 91 0.0031 27.9 5.8 55 172-236 116-170 (184)
104 2l6j_A TPR repeat-containing p 27.1 79 0.0027 25.4 4.8 55 172-236 13-67 (111)
105 2kc7_A BFR218_protein; tetratr 26.0 1.3E+02 0.0046 23.9 6.1 56 172-236 9-64 (99)
106 3q49_B STIP1 homology and U bo 25.9 2.8E+02 0.0096 23.1 8.4 58 172-239 52-109 (137)
107 3cnx_A Uncharacterized protein 25.6 2.2E+02 0.0076 27.6 8.5 19 794-813 133-151 (170)
108 2vyi_A SGTA protein; chaperone 25.6 1.5E+02 0.005 24.0 6.3 55 172-236 21-75 (131)
109 2lni_A Stress-induced-phosphop 25.1 1.3E+02 0.0044 24.7 5.9 56 172-237 59-114 (133)
110 1elw_A TPR1-domain of HOP; HOP 25.0 1.6E+02 0.0053 23.4 6.3 55 172-236 13-67 (118)
111 1elr_A TPR2A-domain of HOP; HO 25.0 1.5E+02 0.0051 24.0 6.3 58 172-239 13-70 (131)
112 3sz7_A HSC70 cochaperone (SGT) 24.8 1.3E+02 0.0044 26.8 6.2 56 172-237 20-75 (164)
113 2vyi_A SGTA protein; chaperone 24.6 1.6E+02 0.0053 23.8 6.3 56 172-237 55-110 (131)
114 2dba_A Smooth muscle cell asso 24.1 1.6E+02 0.0054 24.7 6.4 56 172-237 74-129 (148)
115 3k9i_A BH0479 protein; putativ 24.0 1.1E+02 0.0039 25.6 5.4 40 374-413 42-83 (117)
116 3upv_A Heat shock protein STI1 23.9 1.5E+02 0.0053 24.8 6.3 55 172-236 13-67 (126)
117 3ieg_A DNAJ homolog subfamily 23.7 5E+02 0.017 25.0 12.3 65 172-236 80-149 (359)
118 2gbw_B Biphenyl 2,3-dioxygenas 23.5 1.9E+02 0.0066 27.4 7.5 22 794-816 138-159 (174)
119 2bmo_B Oxygenase-beta NBDO; ni 23.2 1.6E+02 0.0055 29.0 7.0 22 794-816 157-179 (194)
120 1na0_A Designed protein CTPR3; 23.1 1.8E+02 0.0061 23.2 6.3 55 172-236 52-106 (125)
121 1orj_A Flagellar protein FLIS; 23.1 2.5E+02 0.0086 26.3 8.0 82 206-291 28-114 (130)
122 4b4t_Q 26S proteasome regulato 23.0 2.1E+02 0.007 29.4 8.1 80 172-257 144-223 (434)
123 3qky_A Outer membrane assembly 22.5 2E+02 0.0068 27.5 7.5 102 172-292 24-125 (261)
124 3q49_B STIP1 homology and U bo 22.2 1.7E+02 0.0059 24.4 6.3 56 172-237 18-73 (137)
125 2fbn_A 70 kDa peptidylprolyl i 22.2 2.8E+02 0.0096 25.3 8.2 54 173-236 98-151 (198)
126 2fo7_A Synthetic consensus TPR 22.1 1.7E+02 0.0058 23.5 6.0 55 172-236 78-132 (136)
127 1vh6_A Flagellar protein FLIS; 21.8 48 0.0016 31.8 2.8 86 206-295 32-120 (145)
128 1hz4_A MALT regulatory protein 21.6 1.5E+02 0.005 30.0 6.6 63 172-239 144-206 (373)
129 3ke7_A Putative ketosteroid is 21.4 2E+02 0.0069 26.7 7.0 52 743-812 73-124 (134)
130 3hzp_A NTF2-like protein of un 21.2 2.3E+02 0.0079 27.0 7.1 51 750-811 65-115 (131)
131 1na0_A Designed protein CTPR3; 21.0 2.1E+02 0.0071 22.8 6.3 55 172-236 18-72 (125)
132 1ihg_A Cyclophilin 40; ppiase 20.8 2.5E+02 0.0085 29.6 8.4 55 173-237 283-337 (370)
133 2pzi_A Probable serine/threoni 20.7 44 0.0015 38.5 2.7 43 87-136 629-673 (681)
134 3ma5_A Tetratricopeptide repea 20.7 1.4E+02 0.0048 24.7 5.2 52 355-413 10-63 (100)
135 3fsd_A NTF2-like protein of un 20.6 2.8E+02 0.0096 24.6 7.6 15 800-815 114-130 (134)
136 3as5_A MAMA; tetratricopeptide 20.4 1.9E+02 0.0065 24.9 6.3 55 172-236 119-173 (186)
137 2dba_A Smooth muscle cell asso 20.1 1.8E+02 0.0061 24.4 5.9 58 172-236 37-94 (148)
No 1
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=97.67 E-value=4.6e-05 Score=64.65 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=49.2
Q ss_pred eeeccCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhcc
Q 003442 82 TVEIPVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAGN 148 (819)
Q Consensus 82 ~m~iPlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~~ 148 (819)
.|.-+.|||+||||++.++.++|.+||..+..+- |+.+-.. ..+-+.|..||+.|.+ |..|+..
T Consensus 3 ~m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~ 70 (73)
T 2och_A 3 AMVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQG 70 (73)
T ss_dssp ---CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHT
T ss_pred cccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 4677899999999999999999999997776554 6654332 3466789999999998 7788853
No 2
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.65 E-value=5.1e-05 Score=65.15 Aligned_cols=64 Identities=22% Similarity=0.245 Sum_probs=51.1
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhccc
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAGNI 149 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~~l 149 (819)
..|||+||||++.++.++|.+||..+..+- |+..-+......+-+.|..||+.|.+ |..|+...
T Consensus 6 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 73 (79)
T 2dn9_A 6 SGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYG 73 (79)
T ss_dssp CSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSC
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhcc
Confidence 579999999999999999999998776654 66544333345677889999999998 78898644
No 3
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=0.00013 Score=62.54 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=51.1
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhccc
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAGNI 149 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~~l 149 (819)
..|||+||||++.++.++|.+||..+..+- |+..-...+ ..+-+.|..||+.|.+ |..|+...
T Consensus 6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~-~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 72 (78)
T 2ctp_A 6 SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGA-TEAFKAIGTAYAVLSNPEKRKQYDQFG 72 (78)
T ss_dssp SCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHH-HHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccH-HHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 469999999999999999999998876665 776555443 4566788999999998 78898654
No 4
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.49 E-value=0.00019 Score=61.99 Aligned_cols=64 Identities=19% Similarity=0.166 Sum_probs=51.3
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCC-HHHHHHHHHHHHHHHHhhcC---chhhhccc
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYT-MDAFMSRQDVLMDVRDKLLF---EPEYAGNI 149 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS-~~al~aR~~LL~~A~d~L~~---r~eY~~~l 149 (819)
..|||+||||++.++.++|.+||..+..+- |+..-+ .+....+-+.|..||+.|.+ |..|+...
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 76 (82)
T 2ej7_A 8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYG 76 (82)
T ss_dssp SCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTC
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 369999999999999999999998876654 665433 34556677899999999998 78898543
No 5
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.48 E-value=8.5e-05 Score=66.80 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=51.2
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhccc
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAGNI 149 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~~l 149 (819)
..|||+||||++.++.++|.+||..+..+- |+..-.......+-+.|..||+.|.+ |..||..+
T Consensus 16 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l 83 (99)
T 2yua_A 16 RTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL 83 (99)
T ss_dssp SSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred ccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence 469999999999999999999997776554 66543333345677889999999998 78899755
No 6
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=97.48 E-value=0.00012 Score=64.38 Aligned_cols=66 Identities=17% Similarity=0.161 Sum_probs=51.7
Q ss_pred eeccCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhccc
Q 003442 83 VEIPVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAGNI 149 (819)
Q Consensus 83 m~iPlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~~l 149 (819)
...+.|||+||||++.++.++|.+||..+..+- |+..-.. ....+-+.|..||+.|.+ |..|+...
T Consensus 13 ~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g 82 (88)
T 2cug_A 13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDP-GAEDRFIQISKAYEILSNEEKRTNYDHYG 82 (88)
T ss_dssp CSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCST-THHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred ccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCh-hHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 345789999999999999999999998776654 6654332 245677789999999998 78898543
No 7
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.40 E-value=0.00018 Score=63.33 Aligned_cols=63 Identities=22% Similarity=0.248 Sum_probs=50.8
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhccc
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAGNI 149 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~~l 149 (819)
..|||+||||++.++.++|.+||..+..+- |+..-+.+ ...+-+.|..||+.|.+ |..|+...
T Consensus 6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 72 (88)
T 2ctr_A 6 SGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPD-AEAKFREIAEAYETLSDANRRKEYDTLG 72 (88)
T ss_dssp CCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHH-HHHHHHHHHHHHHHHHSSHHHHHHHHTC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChH-HHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 469999999999999999999998777665 77554443 45677789999999998 78898543
No 8
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=97.36 E-value=0.00023 Score=60.81 Aligned_cols=62 Identities=13% Similarity=0.079 Sum_probs=49.3
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhccc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAGNI 149 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~~l 149 (819)
.|||+||||++.++.++|.+||..+..+- |+..-+.. -..+-+.|..||+.|.+ |..|+...
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~-~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 68 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG-AEEKFKEIAEAYDVLSDPRKREIFDRYG 68 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTT-HHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-HHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence 58999999999999999999998876654 66543322 34567789999999998 78898654
No 9
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.34 E-value=0.0002 Score=63.35 Aligned_cols=63 Identities=14% Similarity=0.168 Sum_probs=50.2
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCC-HHHHHHHHHHHHHHHHhhcC---chhhhccc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYT-MDAFMSRQDVLMDVRDKLLF---EPEYAGNI 149 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS-~~al~aR~~LL~~A~d~L~~---r~eY~~~l 149 (819)
.|||+||||++.++.++|.+||..+..+- |+..-. .+....+-+.|..||+.|.+ |..|+...
T Consensus 9 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 76 (92)
T 2dmx_A 9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAG 76 (92)
T ss_dssp CCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHC
T ss_pred cCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 59999999999999999999997776554 665433 24456677889999999998 78898543
No 10
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00023 Score=63.13 Aligned_cols=64 Identities=13% Similarity=0.092 Sum_probs=49.4
Q ss_pred eeeccCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhcc
Q 003442 82 TVEIPVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAGN 148 (819)
Q Consensus 82 ~m~iPlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~~ 148 (819)
.|--..|||+||||++.++.++|.+||..+..+- |+..-.. ..+-+.|..||+.|.+ |..|+..
T Consensus 3 ~m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~ 70 (92)
T 2o37_A 3 AMVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQY 70 (92)
T ss_dssp -CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred ccccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 3455689999999999999999999997776555 6653222 2366789999999998 7889853
No 11
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=97.27 E-value=0.00032 Score=63.35 Aligned_cols=64 Identities=19% Similarity=0.152 Sum_probs=50.0
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCC-HHHHHHHHHHHHHHHHhhcC---chhhhcccc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYT-MDAFMSRQDVLMDVRDKLLF---EPEYAGNIR 150 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS-~~al~aR~~LL~~A~d~L~~---r~eY~~~l~ 150 (819)
.|||+||||++.++.++|.+||..+..+- |+..=+ .+....+-+.|..||+.|.+ |..|+....
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~ 70 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGR 70 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 48999999999999999999997776554 664322 24456677889999999998 788986443
No 12
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=97.24 E-value=0.00036 Score=61.59 Aligned_cols=65 Identities=14% Similarity=0.105 Sum_probs=51.4
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCC---C---HHHHHHHHHHHHHHHHhhcC---chhhhcccc
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGY---T---MDAFMSRQDVLMDVRDKLLF---EPEYAGNIR 150 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~Gy---S---~~al~aR~~LL~~A~d~L~~---r~eY~~~l~ 150 (819)
..|||+||||++.++.++|.+||..+..+- |+.-- + ......+-+.|..||+.|.+ |..|+..+.
T Consensus 15 ~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp CSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 469999999999999999999998876655 66421 1 23455677889999999998 789997664
No 13
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.22 E-value=0.00024 Score=65.29 Aligned_cols=66 Identities=11% Similarity=0.085 Sum_probs=51.3
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhccccc
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAGNIRE 151 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~~l~e 151 (819)
..|||+||||++.++.++|.+||..+..+- |+..-.......+-+.|..||+.|.+ |..||..+.+
T Consensus 19 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 88 (112)
T 2ctq_A 19 TEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRS 88 (112)
T ss_dssp CCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhh
Confidence 479999999999999999999997776554 66543222345567789999999998 7889976543
No 14
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=97.20 E-value=0.00016 Score=65.43 Aligned_cols=65 Identities=18% Similarity=0.173 Sum_probs=51.3
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhccccc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAGNIRE 151 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~~l~e 151 (819)
.|||+||||++.++.++|.+||..+..+- |+..-+......+-+.|..||+.|.+ |..|+....+
T Consensus 3 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (103)
T 1bq0_A 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA 71 (103)
T ss_dssp CCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTT
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhh
Confidence 58999999999999999999998877665 76554323344677889999999998 7889865533
No 15
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.16 E-value=0.00045 Score=63.22 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=50.4
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhcc
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAGN 148 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~~ 148 (819)
..|||+||||++.++.++|.+||..+..+- |+..-.......+-+.|..||+.|.+ |..|+..
T Consensus 16 ~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 82 (109)
T 2ctw_A 16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKY 82 (109)
T ss_dssp SCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 469999999999999999999997776655 66554333345677889999999998 7889853
No 16
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=97.05 E-value=0.0025 Score=63.07 Aligned_cols=64 Identities=14% Similarity=0.178 Sum_probs=49.9
Q ss_pred cCcchhccCCCCCCC--hHHHHHHHHHHhhhh-hccC--CCHH---HHHHHHHHHHHHHHhhcC---chhhhccc
Q 003442 86 PVSCYQIIGVPNQAE--KDEIVKSVMDLKRAE-IEEG--YTMD---AFMSRQDVLMDVRDKLLF---EPEYAGNI 149 (819)
Q Consensus 86 PlD~YriLGv~~~a~--~d~I~rA~~~~~~~~-p~~G--yS~~---al~aR~~LL~~A~d~L~~---r~eY~~~l 149 (819)
|.|||.|||||+.++ .++|.++|..+..+- |+.. -+.. ....+-..|..||+.|.+ |..|+..+
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 77 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSL 77 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHc
Confidence 579999999999997 999999998776664 6642 2221 245677889999999998 78999665
No 17
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=97.04 E-value=0.00086 Score=61.07 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=52.9
Q ss_pred ccCcchhccCCCCCC-ChHHHHHHHHHHhhhh-hccCCC---HHHHHHHHHHHHHHHHhhcC---chhhhccc
Q 003442 85 IPVSCYQIIGVPNQA-EKDEIVKSVMDLKRAE-IEEGYT---MDAFMSRQDVLMDVRDKLLF---EPEYAGNI 149 (819)
Q Consensus 85 iPlD~YriLGv~~~a-~~d~I~rA~~~~~~~~-p~~GyS---~~al~aR~~LL~~A~d~L~~---r~eY~~~l 149 (819)
-..|||+||||++.+ +.++|.+||..+..+- |+..-+ ......+-+.|..||+.|.+ |..|+..+
T Consensus 13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~ 85 (109)
T 2qsa_A 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYL 85 (109)
T ss_dssp TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence 357999999999999 9999999997776655 776544 34556778899999999998 78898755
No 18
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=96.72 E-value=0.0012 Score=65.16 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=48.4
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhccc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAGNI 149 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~~l 149 (819)
-|||+||||++.++.++|.+||..+..+- |+..=....-..+=+.|..||+.|.+ |+.|+...
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~ 68 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYG 68 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhc
Confidence 38999999999999999999997776554 66543222334566779999999998 78898543
No 19
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=96.61 E-value=0.0017 Score=62.56 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=49.1
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCH------HHHHHHHHHHHHHHHhhcC---chhhhccc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTM------DAFMSRQDVLMDVRDKLLF---EPEYAGNI 149 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~------~al~aR~~LL~~A~d~L~~---r~eY~~~l 149 (819)
.|||+||||++.++.++|.+||..+..+- |+..-+. +....+-..|.+||+.|.+ |..|+..+
T Consensus 10 ~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~ 82 (155)
T 2l6l_A 10 KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR 82 (155)
T ss_dssp SHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 59999999999999999999997776654 6643322 2344677889999999998 77898543
No 20
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=96.52 E-value=0.051 Score=53.56 Aligned_cols=63 Identities=14% Similarity=0.267 Sum_probs=48.9
Q ss_pred CcchhccCCCCCC--ChHHHHHHHHHHhhhh-hccCC--CHH---HHHHHHHHHHHHHHhhcC---chhhhccc
Q 003442 87 VSCYQIIGVPNQA--EKDEIVKSVMDLKRAE-IEEGY--TMD---AFMSRQDVLMDVRDKLLF---EPEYAGNI 149 (819)
Q Consensus 87 lD~YriLGv~~~a--~~d~I~rA~~~~~~~~-p~~Gy--S~~---al~aR~~LL~~A~d~L~~---r~eY~~~l 149 (819)
.|||.|||||+.+ +.++|.++|..+..+- |+..- +.. .-..+-..|..||++|.+ |..|+..+
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 74 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence 3899999999999 9999999997776554 55422 221 234577899999999998 78899655
No 21
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.26 E-value=0.0033 Score=55.56 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=43.8
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF 141 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~ 141 (819)
..|||+||||++.++.++|.+||..+..+- |+..-... -..+-+.|..||+.|.+
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~-~~~~f~~i~~Ay~~L~d 81 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPG-SEDAFKAVVNARTALLK 81 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTT-HHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-HHHHHHHHHHHHHHHCC
Confidence 479999999999999999999998776665 77654332 34456788999999987
No 22
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.0056 Score=51.86 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=42.4
Q ss_pred CcchhccCCCC-CCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC
Q 003442 87 VSCYQIIGVPN-QAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF 141 (819)
Q Consensus 87 lD~YriLGv~~-~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~ 141 (819)
-|+|+||||++ .++.++|.+||..+..+- |+.|=+.+ +-+.|..||+.|.+
T Consensus 14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~----~f~~i~~Aye~L~~ 66 (71)
T 2guz_A 14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPF----LATKINEAKDFLEK 66 (71)
T ss_dssp HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHH----HHHHHHHHHHHHhh
Confidence 38999999999 699999999997777665 88876654 56778899999865
No 23
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=96.13 E-value=0.078 Score=53.89 Aligned_cols=63 Identities=11% Similarity=0.110 Sum_probs=46.7
Q ss_pred CcchhccCCCCC--CChHHHHHHHHHHhhhh-hccCC--CH---HHHHHHHHHHHHHHHhhcC---chhhhccc
Q 003442 87 VSCYQIIGVPNQ--AEKDEIVKSVMDLKRAE-IEEGY--TM---DAFMSRQDVLMDVRDKLLF---EPEYAGNI 149 (819)
Q Consensus 87 lD~YriLGv~~~--a~~d~I~rA~~~~~~~~-p~~Gy--S~---~al~aR~~LL~~A~d~L~~---r~eY~~~l 149 (819)
.|||.||||++. ++.++|.++|..+..+- |+.-- +. ..-..+-..|..||+.|.+ |..|+..+
T Consensus 43 ~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l 116 (207)
T 3bvo_A 43 RDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKL 116 (207)
T ss_dssp CCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 599999999987 58999999997776554 55422 11 1234466889999999998 78897543
No 24
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=95.53 E-value=0.0036 Score=58.17 Aligned_cols=56 Identities=9% Similarity=0.054 Sum_probs=45.4
Q ss_pred CcchhccCCCCCCCh--HHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhh
Q 003442 87 VSCYQIIGVPNQAEK--DEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYA 146 (819)
Q Consensus 87 lD~YriLGv~~~a~~--d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~ 146 (819)
.|||+||||++.++. ++|.+||..+..+- |+.+=+ ..+-+.|..||+.|.+ |+.|+
T Consensus 8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~ 69 (114)
T 1gh6_A 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQP 69 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSS
T ss_pred hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhh
Confidence 589999999999998 99999998886665 776554 2456778999999987 55565
No 25
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=95.38 E-value=0.0027 Score=68.70 Aligned_cols=61 Identities=18% Similarity=0.150 Sum_probs=0.0
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhcc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAGN 148 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~~ 148 (819)
-|||+||||++.|+.++|.+||..+..+- |+..=.. .-..+-+.|.+||+.|.+ |+.||.-
T Consensus 28 ~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 92 (329)
T 3lz8_A 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-DAEAKFKDLAEAWEVLKDEQRRAEYDQL 92 (329)
T ss_dssp ------------------------------------------------------------------
T ss_pred cCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCCh-HHHHHHHHHHHHHHHhhhhhhhcccchh
Confidence 59999999999999999999997776554 5532222 345677788999999997 7788853
No 26
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=95.35 E-value=0.016 Score=50.20 Aligned_cols=51 Identities=8% Similarity=0.075 Sum_probs=42.4
Q ss_pred CcchhccCCCCC--CChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC
Q 003442 87 VSCYQIIGVPNQ--AEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF 141 (819)
Q Consensus 87 lD~YriLGv~~~--a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~ 141 (819)
-++|+||||++. ++.++|.+||..+..+- |+.|=+. .+-+.|..||+.|.+
T Consensus 11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~----~~f~~i~~AYe~L~~ 64 (79)
T 1faf_A 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSH----ALMQELNSLWGTFKT 64 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCH----HHHHHHHHHHHHHhh
Confidence 479999999999 99999999998776665 8877554 355678899999986
No 27
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=95.31 E-value=0.0041 Score=61.95 Aligned_cols=57 Identities=9% Similarity=0.047 Sum_probs=44.3
Q ss_pred CcchhccCCCCCCC--hHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 87 VSCYQIIGVPNQAE--KDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 87 lD~YriLGv~~~a~--~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
.|||+||||++.++ .++|++||..+..+- |+.+=++ .+-+.|.+||+.|.+ |+.||.
T Consensus 11 ~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~----e~F~~I~~AYevLsdp~kR~~YD~ 73 (174)
T 2pf4_E 11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKMEDGVKYAHQPD 73 (174)
T ss_dssp HHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CC----TTTTHHHHHHHHHHHHHHHHTSCG
T ss_pred ccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCH----HHHHHHHHHHHHhCCHHHHHHHhc
Confidence 58999999999998 599999997776664 7765443 455788999999987 778885
No 28
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=95.05 E-value=0.012 Score=52.20 Aligned_cols=55 Identities=11% Similarity=-0.061 Sum_probs=43.7
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCH-HHHHHHHHHHHHHHHhhcC
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTM-DAFMSRQDVLMDVRDKLLF 141 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~-~al~aR~~LL~~A~d~L~~ 141 (819)
-|+|+||||++.++.++|.+||..+..+- |+..=.. +.-..+=+.|..||+.|.+
T Consensus 16 ~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~ 72 (88)
T 1iur_A 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK 72 (88)
T ss_dssp HHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999997776654 6654332 3446677889999999986
No 29
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=94.19 E-value=0.022 Score=57.11 Aligned_cols=55 Identities=7% Similarity=-0.017 Sum_probs=41.8
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hccC--CCH-HHHHHHHHHHHHHHHhhcC
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEG--YTM-DAFMSRQDVLMDVRDKLLF 141 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~G--yS~-~al~aR~~LL~~A~d~L~~ 141 (819)
-|||+||||++.++.++|.+||..+..+- |+-. =+. +.-..+=+.|..||+.|.+
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD 175 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 175 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCC
Confidence 69999999999999999999997775544 5532 121 1234566789999999986
No 30
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=93.95 E-value=0.012 Score=68.90 Aligned_cols=64 Identities=14% Similarity=0.072 Sum_probs=35.2
Q ss_pred cCcchhccCCCCCCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhccc
Q 003442 86 PVSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAGNI 149 (819)
Q Consensus 86 PlD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~~l 149 (819)
-.|||+||||++.|+.++|++||..+..+- |+..=....-..+-+.|..||+.|.+ |+.||.-.
T Consensus 20 ~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~ 87 (780)
T 3apo_A 20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYG 87 (780)
T ss_dssp ---CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhc
Confidence 369999999999999999999996664443 55432222334566789999999998 78898643
No 31
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=92.99 E-value=0.12 Score=47.23 Aligned_cols=55 Identities=11% Similarity=-0.020 Sum_probs=40.9
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhh-----hhccCCCHHHH---HHHHHHHHHHHHhhcCc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRA-----EIEEGYTMDAF---MSRQDVLMDVRDKLLFE 142 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~-----~p~~GyS~~al---~aR~~LL~~A~d~L~~r 142 (819)
.|||.|||++. ++.++|.+||..+..+ -|..|=+.+.. ..+=+.|..||+.|.+.
T Consensus 41 ~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~ 103 (106)
T 3ag7_A 41 SGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTL 103 (106)
T ss_dssp SCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCc
Confidence 59999999997 9999999999766543 34445554332 44567889999999873
No 32
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=92.05 E-value=0.22 Score=44.71 Aligned_cols=54 Identities=9% Similarity=-0.007 Sum_probs=38.7
Q ss_pred CcchhccCCCCCCChHHHHHHHHHHhhhh-hcc--CCC-HHHHHHHHHHHHHHHHhhc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMDLKRAE-IEE--GYT-MDAFMSRQDVLMDVRDKLL 140 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~~~~~~-p~~--GyS-~~al~aR~~LL~~A~d~L~ 140 (819)
-++|++|||+..++.++|.+||+.+..+- |+- |=. .+....+=+.|.+||+.|-
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~ 90 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFE 90 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999997765442 331 101 1234556678888988774
No 33
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=91.32 E-value=0.085 Score=52.53 Aligned_cols=61 Identities=11% Similarity=0.170 Sum_probs=47.6
Q ss_pred cCcchhcc------CCCC-CCChHHHHHHHHHHhhhh-hccCCCHHHHHHHHHHHHHHHHhhcC---chhhhccc
Q 003442 86 PVSCYQII------GVPN-QAEKDEIVKSVMDLKRAE-IEEGYTMDAFMSRQDVLMDVRDKLLF---EPEYAGNI 149 (819)
Q Consensus 86 PlD~YriL------Gv~~-~a~~d~I~rA~~~~~~~~-p~~GyS~~al~aR~~LL~~A~d~L~~---r~eY~~~l 149 (819)
+-|||.|| |+|+ .++.++|.++|..+..+- |+..=+ -..+-..|..||+.|.+ |..|+..+
T Consensus 10 ~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp SCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 56999999 5765 789999999998877664 665332 23456778999999998 78899766
No 34
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=91.15 E-value=0.41 Score=40.38 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=30.9
Q ss_pred cchhccCCCCC---CChHHHHHHHHHHhhhh-hccCCCH
Q 003442 88 SCYQIIGVPNQ---AEKDEIVKSVMDLKRAE-IEEGYTM 122 (819)
Q Consensus 88 D~YriLGv~~~---a~~d~I~rA~~~~~~~~-p~~GyS~ 122 (819)
+-|+||||++. ++.++|.++|..++..- |+.|=|.
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~ 43 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSF 43 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCH
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCH
Confidence 45899999999 89999999998888765 9999883
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=81.78 E-value=2 Score=44.71 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=45.1
Q ss_pred CcchhccCCCCCCChHHHHHHHHH-HhhhhhccCCCHH---HHHHHHHHHHHHHHhhcC---chhhhc
Q 003442 87 VSCYQIIGVPNQAEKDEIVKSVMD-LKRAEIEEGYTMD---AFMSRQDVLMDVRDKLLF---EPEYAG 147 (819)
Q Consensus 87 lD~YriLGv~~~a~~d~I~rA~~~-~~~~~p~~GyS~~---al~aR~~LL~~A~d~L~~---r~eY~~ 147 (819)
-++|.+||++..++.++|+++|+. .+...|+...+.+ ....+-.-|..|++.|.+ |..||.
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 389999999999999999999986 6667788877754 344555667789999987 677774
No 36
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=76.99 E-value=6.2 Score=33.26 Aligned_cols=77 Identities=8% Similarity=0.019 Sum_probs=55.8
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhccCCCCchhHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKVSLGNMPLLSQ 251 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~~~la~p~lq~e 251 (819)
++.+.|+|+.+++.-+.+++.... ..+ ++..+|.-.+..+++..|.+.+++++++-...+. .....+
T Consensus 16 ~~~~~g~~~~A~~~~~~al~~~p~---~~~-------a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~---~~~~~~ 82 (100)
T 3ma5_A 16 EHLKHDNASRALALFEELVETDPD---YVG-------TYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT---QKDLSE 82 (100)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT---CTH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC---HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC---cHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc---hhHHHH
Confidence 457789999999999999963221 122 4556666667778999999999999999765533 356678
Q ss_pred HHHHHhhhCh
Q 003442 252 IEESLEELAP 261 (819)
Q Consensus 252 I~~~L~~L~P 261 (819)
+...|.++-+
T Consensus 83 l~~~l~~~~~ 92 (100)
T 3ma5_A 83 LQDAKLKAEG 92 (100)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHccc
Confidence 8777776544
No 37
>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}
Probab=76.37 E-value=3.9 Score=38.29 Aligned_cols=46 Identities=22% Similarity=0.164 Sum_probs=26.8
Q ss_pred CceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEeec
Q 003442 764 GEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKG 813 (819)
Q Consensus 764 ~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~~~ 813 (819)
++.|+|..+.+....+-++|.+. ....++.+.++|.++|+|||...
T Consensus 86 gd~A~v~~~~~~~~~~~~~G~~~----~~~~r~T~V~~r~~~ggWkIvh~ 131 (145)
T 3soy_A 86 GNAAVAEFDWHFTAVRRDNGQTQ----HTTGRESQVWAKIPNTGWRIVHV 131 (145)
T ss_dssp TTEEEEEEEEEEEEEETTTCCEE----EEEEEEEEEEEEETTTEEEEEEE
T ss_pred CCEEEEEEEEEEEEEEcCCCCee----eeEEEEEEEEEEcCCCCEEEEEE
Confidence 46788877777776665454443 01223344444533478999764
No 38
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=75.24 E-value=13 Score=36.88 Aligned_cols=96 Identities=15% Similarity=0.157 Sum_probs=54.8
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHCCceEEEe---eceeEEEEEEeeccCCCCceeEEEEEEEEeEEe----ccc-C
Q 003442 712 HEVHSLSEALDESMLVQWEALADAAKARSCYWRFV---LLQLTIVQADIISHGGVGEIAEIEAVLEEAAEL----VDE-S 783 (819)
Q Consensus 712 H~i~~L~eIL~g~mLs~W~~~A~~l~~~~~Yw~Y~---l~~L~I~sV~v~~d~~~~~~A~VeA~V~E~a~L----yd~-~ 783 (819)
-|++.|.+.++..|+..+....++.+.+|..-+-+ +.+++|.++.. .+ +.+.|.++. .+++ ++. |
T Consensus 76 gD~~~Lr~~~t~~~~~~~~~~i~~r~~~g~~~~~~~v~i~~~el~~a~~--~~---~~~~itV~f--~~~~i~~~rd~~G 148 (194)
T 2cw9_A 76 GELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKM--VE---QGPVLIITF--QAQLVMVVRNPKG 148 (194)
T ss_dssp TCHHHHHHHBCHHHHHHHHHHHHHHHHTTCEECCEEEEEEEEEEEEEEE--ET---TEEEEEEEE--EEEEECEEECTTS
T ss_pred CCHHHHHHhcCHHHHHHHHHHHHHHHHCCCccccEEEEecccEEEEEEE--eC---CeeEEEEEE--EEEEEEEEECCCC
Confidence 38899999999999999999988888888653332 22444443333 23 345544444 4444 542 2
Q ss_pred CCCCCCCccceEEEE--EEEEcCCC-----ceeEeecc
Q 003442 784 QPKNPNYYSSYKIRY--VLRKKDDG-----TWRFCKGD 814 (819)
Q Consensus 784 ~~~~~Sy~~ty~vRY--~L~r~~dG-----~WKI~~~~ 814 (819)
..-..+-.....|.| .|.|..++ .||+.+-+
T Consensus 149 ~vveG~~~~~~~v~e~W~f~R~~~~~~p~~~W~L~~iq 186 (194)
T 2cw9_A 149 EVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRLLDIS 186 (194)
T ss_dssp CEEEECTTCCEEEEEEEEEEECTTCSCGGGCEEEEEEE
T ss_pred CEecCCCCCceEEEEEEEEEEeCCCCCCCCCEEEEEEc
Confidence 110011112335666 45553332 39998754
No 39
>4gb5_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, snoal-like domain, unknown function; HET: PGE; 1.55A {Kribbella flavida}
Probab=74.70 E-value=6 Score=36.72 Aligned_cols=65 Identities=14% Similarity=0.072 Sum_probs=33.7
Q ss_pred EeeceeEEEEEEeeccCCCCceeEEEEEEEEeEEecccCCCCC-CCCccceEEEEEEEEcCCCceeEeeccc
Q 003442 745 FVLLQLTIVQADIISHGGVGEIAEIEAVLEEAAELVDESQPKN-PNYYSSYKIRYVLRKKDDGTWRFCKGDI 815 (819)
Q Consensus 745 Y~l~~L~I~sV~v~~d~~~~~~A~VeA~V~E~a~Lyd~~~~~~-~Sy~~ty~vRY~L~r~~dG~WKI~~~~v 815 (819)
.+.|-+....|++ + |+.|++++.+...-.+......+. ......-++.-+++|.+ |+|||..-.+
T Consensus 74 ~t~H~~~n~~I~v--d---gD~A~~~~~~~a~~~~~~~~~~~~~~~~~~~G~Y~d~~~r~~-g~Wri~~r~~ 139 (159)
T 4gb5_A 74 ATHHAITGHVVTI--D---SDRATIHAHVRAEHWLPAEVAGDGPDRWLVVGFYDNEAVRTA-DGWRLSSVKL 139 (159)
T ss_dssp EEEEEEEEEEEEE--E---TTEEEEEEEEEEEEECCHHHHTTSCCEEEEEEEEEEEEEEET-TEEEEEEEEE
T ss_pred eEEEecCCceEEE--c---CCEEEEEEEEEEEEeeccccCCCCceEEEEEEEEEEEEEEEC-CEEEEEEEEE
Confidence 3445555444454 2 478999888754322221111111 22222224455688875 6899986543
No 40
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=69.58 E-value=25 Score=36.07 Aligned_cols=101 Identities=15% Similarity=0.114 Sum_probs=61.6
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHCCceEEEeeceeEEEEEEeeccCC--CCceeEEEEEE-EEeEEeccc---CCC
Q 003442 712 HEVHSLSEALDESMLVQWEALADAAKARSCYWRFVLLQLTIVQADIISHGG--VGEIAEIEAVL-EEAAELVDE---SQP 785 (819)
Q Consensus 712 H~i~~L~eIL~g~mLs~W~~~A~~l~~~~~Yw~Y~l~~L~I~sV~v~~d~~--~~~~A~VeA~V-~E~a~Lyd~---~~~ 785 (819)
-|++.|...|++.+++.+....++.+++|...+-. -|.|.+|++..-.. .++.+.|.++. .+-...+.+ |..
T Consensus 99 GD~~~Lk~llse~~y~~f~~~i~~r~~~G~~~d~~--il~I~~vdI~~a~~~~~~~~p~itV~f~aq~i~~~rd~k~GeV 176 (222)
T 3qk9_A 99 GDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYADGR--ILDIRGVEIVSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEI 176 (222)
T ss_dssp TCHHHHHHHBCHHHHHHHHHHHHHHHTTTEEECCE--EEEEEEEEEEEEEECSSSCCEEEEEEEEEEEECCEEESTTCCC
T ss_pred CCHHHHHhhcCHHHHHHHHHHHHHHHHCCCEeeee--EeeecceEEEEEEEecCCCceEEEEEEEEEEEEEEEeCCCCcc
Confidence 47889999999999999999999989998765444 55577777653111 13456655553 233333433 332
Q ss_pred CCCCCccceEEEEEEEEcCC---------CceeEeecc
Q 003442 786 KNPNYYSSYKIRYVLRKKDD---------GTWRFCKGD 814 (819)
Q Consensus 786 ~~~Sy~~ty~vRY~L~r~~d---------G~WKI~~~~ 814 (819)
--.+-+.-.++.|...++.+ ..||+.+-+
T Consensus 177 VeGd~d~i~~~~~~WtF~R~~~~~d~~~tp~WkL~eiq 214 (222)
T 3qk9_A 177 AAGDEANILMSSYAMVFTRDPEQIDDDETEGWKILEFV 214 (222)
T ss_dssp SSSCTTCCEEEEEEEEEEECCC--------CEEEEEEE
T ss_pred ccCCCCCceEEEEEEEEEEcCccCCCCCCCCcEEehhh
Confidence 11222334467776655321 369998743
No 41
>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22
Probab=67.61 E-value=17 Score=32.98 Aligned_cols=19 Identities=26% Similarity=0.672 Sum_probs=12.8
Q ss_pred ceEEEEEEEEcCCCceeEe
Q 003442 793 SYKIRYVLRKKDDGTWRFC 811 (819)
Q Consensus 793 ty~vRY~L~r~~dG~WKI~ 811 (819)
..+..+.++|+.||+|||.
T Consensus 99 ~g~~t~v~~r~~dG~Wri~ 117 (142)
T 2gxf_A 99 ERRATYVFKKNAQGEWLCV 117 (142)
T ss_dssp EEEEEEEEEECTTSCEEEE
T ss_pred eEEEEEEEEECCCCCEEEE
Confidence 3345566677557899985
No 42
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=66.15 E-value=15 Score=33.29 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=53.2
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhccCCCCchhHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKVSLGNMPLLSQ 251 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~~~la~p~lq~e 251 (819)
++.+.|+|+.+++.-+.+++-.. ...+. +..+|.-.+..+++..|.+.+++++++-...+.+ ..++..
T Consensus 64 ~~~~~g~~~~A~~~~~~al~l~p---~~~~~-------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~~~~ 131 (148)
T 2vgx_A 64 CRQAMGQYDLAIHSYSYGAVMDI---XEPRF-------PFHAAECLLQXGELAEAESGLFLAQELIANXPEF--XELSTR 131 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST---TCTHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG--HHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC---CCchH-------HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc--hHHHHH
Confidence 45789999999999999886321 11233 4445555566788889999999999887655444 456677
Q ss_pred HHHHHhhhC
Q 003442 252 IEESLEELA 260 (819)
Q Consensus 252 I~~~L~~L~ 260 (819)
++.-|..++
T Consensus 132 ~~~~l~~l~ 140 (148)
T 2vgx_A 132 VSSMLEAIK 140 (148)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 777776654
No 43
>3k7c_A Putative NTF2-like transpeptidase; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: PGE; 2.00A {Campylobacter jejuni}
Probab=65.81 E-value=15 Score=34.29 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=29.9
Q ss_pred ceeEEEEEEeeccCCCCceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEe
Q 003442 748 LQLTIVQADIISHGGVGEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFC 811 (819)
Q Consensus 748 ~~L~I~sV~v~~d~~~~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~ 811 (819)
.+++|...++ .+|.|+|.++|+ |.||.. -+.+=.|+.. ||.|||.
T Consensus 68 ~~I~~~~~~~-----d~~~A~V~v~v~-----~knG~t--------~~~~i~LiK~-dG~WkV~ 112 (114)
T 3k7c_A 68 KDIQIEEKTI-----NKDSAKIRVLVL-----FNNDNN--------QSSNVFLAKK-DRKWLVL 112 (114)
T ss_dssp EEEEEEEEEE-----CSSEEEEEEEEE-----ETTSCE--------EEEEEEEEES-SSSEEEC
T ss_pred ceEEEEEeec-----cCCEEEEEEEEE-----ECCCCc--------cccceeeEEe-CCeEEEE
Confidence 4555553232 357999999983 655432 2467789997 5799985
No 44
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=64.91 E-value=97 Score=29.41 Aligned_cols=112 Identities=14% Similarity=0.136 Sum_probs=60.1
Q ss_pred HHHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhccCCCC-chhH
Q 003442 171 CLLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKVSLGN-MPLL 249 (819)
Q Consensus 171 ~LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~~~la~-p~lq 249 (819)
..+.+.|+|+.+++.=+.+++.....+...+..+- +|.-.+..+++..|.+.+++.+++- +.-.. +...
T Consensus 12 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~-------lg~~~~~~~~~~~A~~~~~~~l~~~---P~~~~~~~a~ 81 (225)
T 2yhc_A 12 QQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLD-------LIYAYYKNADLPLAQAAIDRFIRLN---PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHH-------HHHHHHHTTCHHHHHHHHHHHHHHC---TTCTTHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH-------HHHHHHhcCCHHHHHHHHHHHHHHC---cCCCcHHHHH
Confidence 35678899999999999999743333444444444 4444466778888888888777643 22210 1223
Q ss_pred HHHHHHHhhhChhhHHhhhCCCCCcchHHHHHHHHHHHHHHHH
Q 003442 250 SQIEESLEELAPACTLELLGMPHSPENAERRRGAIAALRELIR 292 (819)
Q Consensus 250 ~eI~~~L~~L~PyriLELLalPl~~e~~~Rr~ggL~lLr~~LR 292 (819)
-.+-..+.++.+..+-.++.++.......+-+.|+..++.++.
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 124 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR 124 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH
Confidence 3344444444444333333333321112456677888888884
No 45
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=64.85 E-value=20 Score=31.61 Aligned_cols=77 Identities=13% Similarity=0.068 Sum_probs=52.6
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhccCCCCchhHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKVSLGNMPLLSQ 251 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~~~la~p~lq~e 251 (819)
++.+.|+|+.+++.-+.+++-.. ...++ +..+|.-.+..+++..|...+++++++--..+.. ..+..+
T Consensus 61 ~~~~~g~~~~A~~~~~~al~~~p---~~~~~-------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~~~~ 128 (142)
T 2xcb_A 61 CRQSLGLYEQALQSYSYGALMDI---NEPRF-------PFHAAECHLQLGDLDGAESGFYSARALAAAQPAH--EALAAR 128 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT---TCTHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGG--HHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC---CCcHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch--HHHHHH
Confidence 45788999999999998886321 12233 3344444556788889999999999887655444 466677
Q ss_pred HHHHHhhhC
Q 003442 252 IEESLEELA 260 (819)
Q Consensus 252 I~~~L~~L~ 260 (819)
++.-|..+.
T Consensus 129 ~~~~l~~l~ 137 (142)
T 2xcb_A 129 AGAMLEAVT 137 (142)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 46
>3fka_A Uncharacterized NTF-2 like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.69A {Silicibacter pomeroyi dss-3}
Probab=64.84 E-value=11 Score=34.13 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=27.5
Q ss_pred eeEEEEEEeeccCCCCceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEeec
Q 003442 749 QLTIVQADIISHGGVGEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKG 813 (819)
Q Consensus 749 ~L~I~sV~v~~d~~~~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~~~ 813 (819)
+.+|.+++|. |+.|+|++... +. . . .|+=.+.|++. ||+|||.+-
T Consensus 71 ~~~i~~I~i~-----gd~A~a~v~~~-----~~----~-~----~f~D~~~L~k~-dg~WkIv~K 115 (120)
T 3fka_A 71 FWAISSVSVQ-----GDIAMLHVEND-----WA----G-M----RFDDFLTVLLH-EGSWRIVSK 115 (120)
T ss_dssp CEEEEEEEEE-----TTEEEEEEEEE-----ET----T-E----EEEEEEEEEEE-TTEEEEEEE
T ss_pred eEEEEEEEEE-----CCEEEEEEEEE-----cC----C-C----ceEEEEEEEEe-CCEEEEEEE
Confidence 3446666663 36888877741 21 1 1 33456788987 479999863
No 47
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=62.31 E-value=18 Score=32.78 Aligned_cols=84 Identities=13% Similarity=0.106 Sum_probs=60.7
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhccCCCCchhHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKVSLGNMPLLSQ 251 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~~~la~p~lq~e 251 (819)
++.+.|+++.++++-++.+......+ | ....+.++..+|.-.+..+++.+|.+.+++++++.++.+. +....+
T Consensus 116 ~~~~~g~~~~A~~~~~~al~~~~~~~---~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~ 188 (203)
T 3gw4_A 116 VALHFGDLAGARQEYEKSLVYAQQAD---D-QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED---SEAVNE 188 (203)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhcc---c-hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC---HHHHHH
Confidence 45678999999999998885311111 1 2334566777888888899999999999999999987632 455677
Q ss_pred HHHHHhhhChh
Q 003442 252 IEESLEELAPA 262 (819)
Q Consensus 252 I~~~L~~L~Py 262 (819)
+...+.++.|.
T Consensus 189 ~~~~~~~~~~~ 199 (203)
T 3gw4_A 189 LMTRLNGLEHH 199 (203)
T ss_dssp HHHHHHTTCC-
T ss_pred HHhcccchhhc
Confidence 77777776553
No 48
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=62.11 E-value=14 Score=31.75 Aligned_cols=35 Identities=17% Similarity=0.049 Sum_probs=31.8
Q ss_pred HHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhcc
Q 003442 207 ALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKV 241 (819)
Q Consensus 207 ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~~ 241 (819)
|.-|+++|+..+.+++|..|...++.|++++....
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~ 39 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE 39 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC
Confidence 56799999999999999999999999999997653
No 49
>3b8l_A Uncharacterized protein; putative aromatic ring hydroxylase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.75A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=60.48 E-value=37 Score=31.36 Aligned_cols=46 Identities=11% Similarity=0.226 Sum_probs=25.7
Q ss_pred CceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEeeccc
Q 003442 764 GEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKGDI 815 (819)
Q Consensus 764 ~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~~~~v 815 (819)
++.|++.+.+.- +...+... .. ....++.+.++|.+ |+|||..-.+
T Consensus 104 gd~A~~~~~~~~---~~~~~~g~-~~-~~~g~y~d~~~r~d-g~WrI~~r~~ 149 (163)
T 3b8l_A 104 GDTASMRAYVIG---MGVGKDGR-AV-TVNGRYFFEVRRTE-KGWKATRYTM 149 (163)
T ss_dssp SSEEEEEEEEEE---EEEETTSC-EE-EEEEEEEEEEEEET-TEEEEEEEEE
T ss_pred CCEEEEEEEEEE---EEEcCCCC-eE-EEEEEEEEEEEEeC-CEEEEEEEEE
Confidence 478888777643 21111111 11 12335667788864 7899987554
No 50
>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}
Probab=59.99 E-value=27 Score=30.16 Aligned_cols=42 Identities=26% Similarity=0.410 Sum_probs=21.2
Q ss_pred CceeEEEEEEEEeEEecccCCCCCCCCccceEEEEE--EEEcCCCceeEee
Q 003442 764 GEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYV--LRKKDDGTWRFCK 812 (819)
Q Consensus 764 ~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~--L~r~~dG~WKI~~ 812 (819)
++.|++....+=.... .+|.+ -++..||+ ++|+.||+|||..
T Consensus 77 gd~A~~~~~~~~~~~~-~~G~~------~~~~g~~~~v~~r~~dG~W~i~~ 120 (129)
T 3hx8_A 77 GDFAFESGSFSLKAPG-KDSKL------VDAAGKYVVVWRKGQDGGWKLYR 120 (129)
T ss_dssp TTEEEEEEEEEEEEEC-TTSCE------EEEEEEEEEEEEECTTSCEEEEE
T ss_pred CCEEEEEEEEEEEeeC-CCCCe------eeeeEEEEEEEEECCCCcEEEEE
Confidence 4788887655322110 11111 12334554 4554368999974
No 51
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=57.87 E-value=36 Score=28.51 Aligned_cols=77 Identities=17% Similarity=0.045 Sum_probs=52.9
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhccCCCCchhHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKVSLGNMPLLSQ 251 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~~~la~p~lq~e 251 (819)
++...|+++.+++.-+.+++... ...+ ++..+|.-....+++..|...+++++++-...+. .....+
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~p---~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~ 94 (115)
T 2kat_A 28 TYAEHEQFDAALPHLRAALDFDP---TYSV-------AWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGD---QQVVKE 94 (115)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT---TCHH-------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---HHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHCC---CcHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccc---HHHHHH
Confidence 45789999999999999996321 1122 3455555566778899999999999988754422 345566
Q ss_pred HHHHHhhhCh
Q 003442 252 IEESLEELAP 261 (819)
Q Consensus 252 I~~~L~~L~P 261 (819)
+...|.+|..
T Consensus 95 l~~~l~~l~~ 104 (115)
T 2kat_A 95 LQVFLRRLAR 104 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 7666666543
No 52
>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}
Probab=57.49 E-value=64 Score=29.53 Aligned_cols=20 Identities=20% Similarity=0.559 Sum_probs=14.7
Q ss_pred EEEEEEEEcCCCceeEeeccc
Q 003442 795 KIRYVLRKKDDGTWRFCKGDI 815 (819)
Q Consensus 795 ~vRY~L~r~~dG~WKI~~~~v 815 (819)
+..|.++|.+ |+|||....+
T Consensus 118 ~~T~v~~r~~-g~WrI~~~h~ 137 (143)
T 4i4k_A 118 RASWLAVEQD-GQWRLAAYQN 137 (143)
T ss_dssp EEEEEEEEET-TEEEEEEEEE
T ss_pred EEEEEEEEEC-CcEEEEEecC
Confidence 4567788875 6899987654
No 53
>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16
Probab=57.30 E-value=47 Score=30.25 Aligned_cols=15 Identities=33% Similarity=0.288 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHH
Q 003442 690 LEEAEALVKQWQAIK 704 (819)
Q Consensus 690 ~~~Ae~lV~~Wq~aK 704 (819)
.++.++++++|..+=
T Consensus 29 ~~~i~~~~~~~~~A~ 43 (148)
T 3bb9_A 29 DSAAGNVVKQFHAAL 43 (148)
T ss_dssp TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467788999997654
No 54
>3blz_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.75A {Shewanella baltica} SCOP: d.17.4.14
Probab=56.99 E-value=17 Score=32.68 Aligned_cols=43 Identities=21% Similarity=0.351 Sum_probs=25.8
Q ss_pred EEEEEeeccCCCCceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEeec
Q 003442 752 IVQADIISHGGVGEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKG 813 (819)
Q Consensus 752 I~sV~v~~d~~~~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~~~ 813 (819)
|.+|++. |+.|++++... .+. +. .|.=.++|+|.+ |+|||..-
T Consensus 78 i~~i~i~-----gd~A~a~~~~~----~~~-----~~----~~~d~~~l~k~d-g~WkI~~~ 120 (128)
T 3blz_A 78 IARIDIV-----GTAASARIDTD----DIS-----GF----RFTDFFNLLKVE-GKWTVVSK 120 (128)
T ss_dssp EEEEEEE-----TTEEEEEEEEE----EET-----TE----EEEEEEEEEEET-TEEEEEEE
T ss_pred EEEEEEE-----CCEEEEEEEEE----EcC-----CC----ceEEeEEEEEEC-CEEEEEEE
Confidence 4545553 36888877763 121 11 233355899975 78999764
No 55
>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus}
Probab=56.63 E-value=44 Score=31.01 Aligned_cols=47 Identities=11% Similarity=0.129 Sum_probs=26.4
Q ss_pred CceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEeecc
Q 003442 764 GEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKGD 814 (819)
Q Consensus 764 ~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~~~~ 814 (819)
|+.|++-.......+--++|.+. ....++--.++|+.||.|||.--.
T Consensus 87 GD~A~~~~~~~~~~t~~~~g~~~----~~~g~~~~v~rK~~dG~W~i~~d~ 133 (139)
T 3rob_A 87 EPMAYTRTHLHIKVTPRSGGAVR----ELAGHAMSIFRRSMFGEWQLARDA 133 (139)
T ss_dssp TTEEEEEEEEEEEEEETTSCCCE----EEEEEEEEEEEECTTSCEEEEEEE
T ss_pred CCeEEEEEEEEEEEecCCCCcee----EeeccEEEEEEECCCCcEEEEEEh
Confidence 57888877776553322222221 112223346677678999997543
No 56
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=56.05 E-value=37 Score=37.52 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=58.2
Q ss_pred HHHHHcCchHHHHHHHHhhcCCCCC--CCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhc-cCCCCch
Q 003442 171 CLLQEVGEEKLVLDIGRAALQHPNA--KPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSK-VSLGNMP 247 (819)
Q Consensus 171 ~LLqE~GE~elVl~lg~~~L~~~~~--~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~-~~la~p~ 247 (819)
.++...|.|+.++.+.++.|.-... -+..+|+ |.++--+|.-.+.++++++|..++++|+++++.. |.- -+
T Consensus 348 ~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~----a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~--Hp 421 (433)
T 3qww_A 348 GVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNV----ASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKD--HP 421 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT--CH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHH----HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC--Ch
Confidence 3457789999999999999952110 0223444 5556688888899999999999999999999765 222 23
Q ss_pred hHHHHHHHHhh
Q 003442 248 LLSQIEESLEE 258 (819)
Q Consensus 248 lq~eI~~~L~~ 258 (819)
.-.+++..|++
T Consensus 422 ~~~~l~~~l~~ 432 (433)
T 3qww_A 422 YISEIKQEIES 432 (433)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 44557766664
No 57
>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides}
Probab=54.52 E-value=33 Score=31.88 Aligned_cols=20 Identities=25% Similarity=0.778 Sum_probs=15.2
Q ss_pred EEEEEEEEcCCCceeEeeccc
Q 003442 795 KIRYVLRKKDDGTWRFCKGDI 815 (819)
Q Consensus 795 ~vRY~L~r~~dG~WKI~~~~v 815 (819)
+..|.++|.+ |+|||....+
T Consensus 108 ~~t~v~vr~d-g~WrI~a~h~ 127 (146)
T 3gzr_A 108 RLTLLAVERE-GVWRFIHGHN 127 (146)
T ss_dssp EEEEEEEEET-TEEEEEEEEE
T ss_pred EEEEEEEEEC-CEEEEEEEec
Confidence 4567889975 7899997765
No 58
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27
Probab=52.44 E-value=45 Score=28.99 Aligned_cols=19 Identities=26% Similarity=0.632 Sum_probs=12.1
Q ss_pred EEEEEEEEcCCCceeEeec
Q 003442 795 KIRYVLRKKDDGTWRFCKG 813 (819)
Q Consensus 795 ~vRY~L~r~~dG~WKI~~~ 813 (819)
+..+.++++.||+|||...
T Consensus 110 ~~~~v~~~~~dG~W~i~~~ 128 (135)
T 3d9r_A 110 QELFLLRKSATGSWQTARY 128 (135)
T ss_dssp EEEEEEEECTTSCEEEEEE
T ss_pred cEEEEEEecCCCcEEEEEE
Confidence 3444456653689999764
No 59
>2b1x_B Naphthalene dioxygenase small subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: d.17.4.4 PDB: 2b24_B
Probab=51.73 E-value=64 Score=30.52 Aligned_cols=63 Identities=13% Similarity=-0.002 Sum_probs=32.8
Q ss_pred eeceeEEEEEEeeccCCCCceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEeecccc
Q 003442 746 VLLQLTIVQADIISHGGVGEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKGDIQ 816 (819)
Q Consensus 746 ~l~~L~I~sV~v~~d~~~~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~~~~v~ 816 (819)
+.|-++...|++ ++ .++.|++++.+. ..-...+.+....+ .-++.+.|+|.+ |+|||..=.|.
T Consensus 95 t~H~i~n~~I~~--~~-~~d~a~~~s~~~--~~~~~~~~~~~~~~--~G~y~D~l~r~~-g~Wri~~R~v~ 157 (172)
T 2b1x_B 95 SRHFVTNVRVAT--GD-SEDEFKVTSNLL--LYRTRGDVATYDVL--SGERTDVLRRAG-DSFLMAKRVVL 157 (172)
T ss_dssp EEEEEEEEEEEE--CS-STTEEEEEEEEE--EEEECTTCSCCEEE--EEEEEEEEEEET-TEEEEEEEEEE
T ss_pred EEEEecCEEEEE--ec-CCCEEEEEEEEE--EEEEcCCCCceEEE--EEEEEEEEEEcC-CEEEEEEEEEE
Confidence 336555443443 22 136888776641 11122222111222 346778888975 67999976553
No 60
>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}
Probab=51.10 E-value=67 Score=29.83 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=25.2
Q ss_pred CceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEeec
Q 003442 764 GEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKG 813 (819)
Q Consensus 764 ~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~~~ 813 (819)
++.|.| +.+|....-.+++ .. ...++.+.++|++ |+|||...
T Consensus 82 gd~A~v--~~~e~~~~~~~~g---~~--~~~r~T~V~~r~~-g~Wrivhh 123 (144)
T 3gwr_A 82 ADHVIR--IVDEFLTIGDETA---PR--PAILATNVYRREA-DGWRMVLH 123 (144)
T ss_dssp SSEEEE--EEEEEEEETTCSS---CC--CCEEEEEEEEECS-SSEEEEEE
T ss_pred CCEEEE--EEEEEEEecCCCC---ce--eeEEEEEEEEEEC-CEEEEEEE
Confidence 467766 3445544322221 12 4677888899975 68999753
No 61
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=50.84 E-value=48 Score=36.37 Aligned_cols=65 Identities=12% Similarity=0.078 Sum_probs=50.2
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCC--CCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhc
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNA--KPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSK 240 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~--~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~ 240 (819)
++...|.|+.++.+.++.|.-... .+..+| +|.++-.+|.-.+.++++++|..++++|+..++..
T Consensus 338 ~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~----~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~ 404 (429)
T 3qwp_A 338 ACINLGLLEEALFYGTRTMEPYRIFFPGSHPV----RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT 404 (429)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhHHHHcCCCChH----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999952110 022233 46667788888889999999999999999999765
No 62
>3a76_A Gamma-hexachlorocyclohexane dehydrochlorinase; barrel fold, lyase, detoxification; HET: SPD; 2.25A {Sphingomonas paucimobilis}
Probab=50.27 E-value=59 Score=30.83 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=31.1
Q ss_pred EEeeceeEEEEEEeeccCCCCceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEeeccc
Q 003442 744 RFVLLQLTIVQADIISHGGVGEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKGDI 815 (819)
Q Consensus 744 ~Y~l~~L~I~sV~v~~d~~~~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~~~~v 815 (819)
....|.+....|++ + +++.|++.+...-.+....++ ......-++.+.++|.+ |+|||..-.+
T Consensus 89 ~~t~H~i~n~~I~~--~--g~d~A~~~~~~~~~~~~~~~~----~~~~~~gry~d~l~r~d-g~WrI~~r~~ 151 (176)
T 3a76_A 89 HECIHYGTNLRLEF--V--SADKVNGIGDVLLLGNLVEGN----QSILIAAVFTDEYERRD-GVWKFSKRNA 151 (176)
T ss_dssp EEEEEEEEEEEEEE--S--SSSEEEEEEEEEEEEEETGGG----EEEEEEEEEEEEEEEET-TEEEEEEEEE
T ss_pred CceEEecCCeEEEE--c--CCCeEEEEEEEEEEEEecCCC----ceEEEEEEEEEEEEEEC-CEEEEEEEEE
Confidence 34446655554444 2 247888744332222221111 11111224556688874 7899987644
No 63
>2rfr_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.16A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=49.40 E-value=24 Score=32.09 Aligned_cols=19 Identities=21% Similarity=0.569 Sum_probs=14.0
Q ss_pred EEEEEEEcCCCceeEeeccc
Q 003442 796 IRYVLRKKDDGTWRFCKGDI 815 (819)
Q Consensus 796 vRY~L~r~~dG~WKI~~~~v 815 (819)
+.+.++|.+ |+|||..-.+
T Consensus 121 y~d~~~r~~-g~Wri~~r~~ 139 (155)
T 2rfr_A 121 NRWTFRRTP-AGWRAVRREN 139 (155)
T ss_dssp EEEEEEEET-TEEEEEEEEE
T ss_pred eEEEEEECC-CEEEEEEEEE
Confidence 456888874 7899998543
No 64
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=48.75 E-value=20 Score=30.36 Aligned_cols=65 Identities=11% Similarity=0.016 Sum_probs=47.2
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhc
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSK 240 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~ 240 (819)
++.+.|+++.++++-+..++...... | .-..+.++..+|.-.+..+++..|.+.+++++++.++.
T Consensus 98 ~~~~~~~~~~A~~~~~~a~~~~~~~~---~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 98 TYTLLQDYEKAIDYHLKHLAIAQELK---D-RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 162 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHcc---c-hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence 44678999999999888885311111 1 12345667778888888899999999999999987654
No 65
>3duk_A NTF2-like protein of unknown function; structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.20A {Methylobacillus flagellatus KT} SCOP: d.17.4.0
Probab=48.66 E-value=40 Score=30.68 Aligned_cols=44 Identities=25% Similarity=0.421 Sum_probs=26.6
Q ss_pred EEEEEEeeccCCCCceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEeec
Q 003442 751 TIVQADIISHGGVGEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKG 813 (819)
Q Consensus 751 ~I~sV~v~~d~~~~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~~~ 813 (819)
+|.++++. |+.|++++..+ .|. . ..| +=.++|++.+ |+|||.+-
T Consensus 76 ~I~~I~i~-----gd~A~a~v~~~----~~~----~-~~f----~D~l~L~k~d-g~WkIv~K 119 (125)
T 3duk_A 76 RITNIDIV-----GTVAHARVEAE----NWT----N-FKF----SDLFLLLKLD-GKWTIVNK 119 (125)
T ss_dssp EEEEEEEE-----TTEEEEEEEEE----CSS----S-CCE----EEEEEEEEET-TEEEEEEE
T ss_pred eEEEEEEE-----CCEEEEEEEEE----EcC----C-CeE----EEEEEEEEeC-CEEEEEEE
Confidence 46666663 36888876542 221 1 222 3357788874 79999863
No 66
>3ef8_A Putative scyalone dehydratase; YP_496742.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE PG4; 1.50A {Novosphingobium aromaticivorans DSM12444} SCOP: d.17.4.28
Probab=44.64 E-value=1.1e+02 Score=28.01 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=32.8
Q ss_pred EEeeceeEEEEEEeeccCCCCceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEeeccc
Q 003442 744 RFVLLQLTIVQADIISHGGVGEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKGDI 815 (819)
Q Consensus 744 ~Y~l~~L~I~sV~v~~d~~~~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~~~~v 815 (819)
..+.|-+....|++. + ++.|++++.+.-... ..++.. .....-++...++|.+ |+|||..-.+
T Consensus 68 ~~~~H~~~n~~I~~~--g--dd~A~~~~~~~~~~~-~~~~~~---~~~~~gry~d~~~r~d-g~Wri~~r~~ 130 (150)
T 3ef8_A 68 RGTSHHNSNICIDFV--S--ETEANVRSVVLAIHR-YTKERP---DGILYGQYFDTVVKVD-GQWKFKRREL 130 (150)
T ss_dssp EEEEEEEEEEEEEEE--E--TTEEEEEEEEEEEEE-ESSSSC---CEEEEEEEEEEEEEET-TEEEEEEEEE
T ss_pred CceEEecCCEEEEEc--C--CCEEEEEEEEEEEEE-ccCCCC---eEEEEEEEEEEEEEEC-CEEEEEEEEE
Confidence 334455555544543 2 258888777632211 122211 1112235666788874 7899987654
No 67
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=43.80 E-value=78 Score=26.67 Aligned_cols=77 Identities=9% Similarity=-0.058 Sum_probs=49.0
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhccCC-CCchhHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKVSL-GNMPLLS 250 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~~~l-a~p~lq~ 250 (819)
++...|+++.+++.-+.+++-.. ...+ ++..+|.-.+..+++..|.+.+++++++-...+.- ..+++..
T Consensus 47 ~~~~~~~~~~A~~~~~~al~~~p---~~~~-------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~ 116 (126)
T 3upv_A 47 ALAKLMSFPEAIADCNKAIEKDP---NFVR-------AYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQ 116 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT---TCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCC---CcHH-------HHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHH
Confidence 34578999999999999996321 1122 34555555566788999999999999887332211 0134555
Q ss_pred HHHHHHhh
Q 003442 251 QIEESLEE 258 (819)
Q Consensus 251 eI~~~L~~ 258 (819)
.|.....+
T Consensus 117 ~l~~~~~~ 124 (126)
T 3upv_A 117 LYYKASQQ 124 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55554443
No 68
>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28
Probab=43.56 E-value=58 Score=30.42 Aligned_cols=21 Identities=24% Similarity=0.165 Sum_probs=14.7
Q ss_pred eEEEEEEEEcCCCceeEeeccc
Q 003442 794 YKIRYVLRKKDDGTWRFCKGDI 815 (819)
Q Consensus 794 y~vRY~L~r~~dG~WKI~~~~v 815 (819)
.+..+.++|. ||+|||.....
T Consensus 115 ~~~t~v~~r~-dG~WrI~~~~~ 135 (172)
T 3cu3_A 115 SLPLYVVTKG-DEGWQIEGLLN 135 (172)
T ss_dssp BCCEEEEEEE-TTEEEEEEEEC
T ss_pred eEEEEEEEEe-CCeEEEEEEEc
Confidence 3456667776 57899987643
No 69
>3ejv_A Uncharacterized protein with cystatin-like fold; structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.40A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} SCOP: d.17.4.28
Probab=42.96 E-value=1.5e+02 Score=28.50 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=12.9
Q ss_pred EEEEEEEcCCCceeEeeccc
Q 003442 796 IRYVLRKKDDGTWRFCKGDI 815 (819)
Q Consensus 796 vRY~L~r~~dG~WKI~~~~v 815 (819)
+.-+++|.+ |+|||..-.+
T Consensus 152 Y~D~~~R~d-g~Wri~~r~~ 170 (179)
T 3ejv_A 152 YRLTLRTVA-DGWVISAMRI 170 (179)
T ss_dssp EEEEEEEET-TEEEEEEEEE
T ss_pred EEEEEEEEC-CeEEEEEEEE
Confidence 445567765 6899987544
No 70
>3gzx_B Biphenyl dioxygenase subunit beta; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} SCOP: d.17.4.4 PDB: 3gzy_B* 2yfi_B 2xr8_B* 2xrx_B* 2xsh_B 2xso_B 2yfj_B* 2yfl_B*
Probab=42.42 E-value=91 Score=30.66 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=17.1
Q ss_pred eEEEEEEEEcCCC-ceeEeecccc
Q 003442 794 YKIRYVLRKKDDG-TWRFCKGDIQ 816 (819)
Q Consensus 794 y~vRY~L~r~~dG-~WKI~~~~v~ 816 (819)
-+.+|.|++..|| +|||..=.|+
T Consensus 148 G~y~D~L~r~~~g~~wrI~~R~V~ 171 (186)
T 3gzx_B 148 GERRDVLRIADNPLGFQIAKRTII 171 (186)
T ss_dssp EEEEEEEEECSSTTSEEEEEEEEE
T ss_pred EEEEEEEEEcCCCceEEEEEEEEE
Confidence 4789999993346 7999976653
No 71
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=41.85 E-value=1e+02 Score=25.60 Aligned_cols=59 Identities=10% Similarity=0.022 Sum_probs=39.0
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLL 237 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL 237 (819)
++.+.|+|+.+++.-+.+++.....+...++.+.+| .-.+..+++..|...++++++.-
T Consensus 48 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la-------~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 48 SYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG-------LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH-------HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH-------HHHHHcCCHHHHHHHHHHHHHHC
Confidence 456789999999999998874333333344444444 44445677888888888777653
No 72
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=41.09 E-value=63 Score=29.87 Aligned_cols=72 Identities=8% Similarity=-0.025 Sum_probs=39.0
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhccCCCCchhHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKVSLGNMPLLSQ 251 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~~~la~p~lq~e 251 (819)
++++.|+|+.+++.-+.+++-... ..+. +..+|.-.+..+++..|...+++++++- .++++..+
T Consensus 79 ~~~~~g~~~~Ai~~~~~al~l~P~---~~~~-------~~~lg~~~~~lg~~~eA~~~~~~al~l~------~~~~~~~~ 142 (151)
T 3gyz_A 79 IYQIKEQFQQAADLYAVAFALGKN---DYTP-------VFHTGQCQLRLKAPLKAKECFELVIQHS------NDEKLKIK 142 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSSS---CCHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHC------CCHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhCCC---CcHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCHHHHHH
Confidence 445667777777776666642111 1222 3333333344566777777777777653 22455566
Q ss_pred HHHHHhhh
Q 003442 252 IEESLEEL 259 (819)
Q Consensus 252 I~~~L~~L 259 (819)
+++-|+.|
T Consensus 143 A~~ll~~l 150 (151)
T 3gyz_A 143 AQSYLDAI 150 (151)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 66555544
No 73
>2chc_A Protein RV3472; hypothetical protein; 1.69A {Mycobacterium tuberculosis} SCOP: d.17.4.25
Probab=40.71 E-value=58 Score=30.19 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=24.9
Q ss_pred CceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEeeccc
Q 003442 764 GEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKGDI 815 (819)
Q Consensus 764 ~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~~~~v 815 (819)
++.|++.+.+. ...... +.......-+..+.++|. ||+|||..-.+
T Consensus 84 gd~A~~~~~~~--~~~~~~---~g~~~~~~g~y~d~~~r~-dg~Wri~~r~~ 129 (170)
T 2chc_A 84 GDVATGRSASV--VTLATA---AGYKILGSGEYQDRLIKQ-DGQWRIAYRRL 129 (170)
T ss_dssp TTEEEEEEEEE--EEEEET---TEEEEEEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred CCEEEEEEEEE--EEEEcC---CCCEEEEEEEEEEEEEEE-CCEEEEEEEEE
Confidence 36888877762 112211 111111233456678886 57899987654
No 74
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=39.41 E-value=1.4e+02 Score=28.27 Aligned_cols=133 Identities=11% Similarity=0.013 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhhcCchhhhcccccCCCCCCcccccccchhhHHHHHH-------
Q 003442 102 DEIVKSVMDLKRAEIEEGYTMDAFMSRQDVLMDVRDKLLFEPEYAGNIRENIPPKPSLKIQWAWLPAALCLLQ------- 174 (819)
Q Consensus 102 d~I~rA~~~~~~~~p~~GyS~~al~aR~~LL~~A~d~L~~r~eY~~~l~e~~~~~~~l~I~~~~l~GAL~LLq------- 174 (819)
++-...|++.+...|...+..++...+..++...-+----...|+..+..++.. -.++....-=|++...
T Consensus 21 ~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~---~~~~~a~~~~g~~~~~~~~~~~~ 97 (225)
T 2yhc_A 21 RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH---PNIDYVMYMRGLTNMALDDSALQ 97 (225)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---TTHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---CcHHHHHHHHHHHHHhhhhhhhh
Confidence 444555778888878877777777666555432100000012233333322211 1223333333444433
Q ss_pred ----------HcCchHHHHHHHHhhcCCCCCCCchhhHHHHHH-------HHhHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 003442 175 ----------EVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMA-------LAECAIAKVAFEKNNVSQGFEALARAQCLL 237 (819)
Q Consensus 175 ----------E~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~A-------LA~~elare~~e~~~~~~~~e~Le~al~LL 237 (819)
+.|+++.+++.=+.+++.....+...+...-++ -++..+|.-.+..+++..|...++++++.-
T Consensus 98 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 177 (225)
T 2yhc_A 98 GFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY 177 (225)
T ss_dssp ----------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred hhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC
Confidence 468999999999999975433343334322222 222445555667788888888888777653
No 75
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=39.05 E-value=28 Score=35.00 Aligned_cols=54 Identities=7% Similarity=0.129 Sum_probs=32.8
Q ss_pred EEeeceeEEEEEEeeccCCCCceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEeeccc
Q 003442 744 RFVLLQLTIVQADIISHGGVGEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCKGDI 815 (819)
Q Consensus 744 ~Y~l~~L~I~sV~v~~d~~~~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~~~~v 815 (819)
.|.=++++|..... ..+++.+.|..+| .++| ..+.|.|.|.+. +|+|||.|-.|
T Consensus 115 ~y~~q~i~v~~~~~---~~~~~~~~V~t~i------~~~g--------~~i~v~y~l~~~-~g~WkvyDv~i 168 (211)
T 2qgu_A 115 NVRNQTVAYKPFRA---AADDTDVVVRSTV------NNNG--------EPVALDYRVEKS-PNGWKVYDINI 168 (211)
T ss_dssp TCSSCEEEECCCCS---CTTCSEEEEEEEE------EETT--------EEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred hhCCCeEEEecccc---CCCCCeEEEEEEE------EeCC--------CeEEEEEEEEEc-CCceEEEEEEE
Confidence 35545666663321 1234677776665 2222 256799999876 57899988654
No 76
>3eby_A Beta subunit of A putative aromatic-ring-hydroxyl dioxygenase; YP_001165631.1; 1.75A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} SCOP: d.17.4.4
Probab=38.65 E-value=99 Score=29.14 Aligned_cols=22 Identities=18% Similarity=-0.028 Sum_probs=16.7
Q ss_pred eEEEEEEEEcCCCceeEeecccc
Q 003442 794 YKIRYVLRKKDDGTWRFCKGDIQ 816 (819)
Q Consensus 794 y~vRY~L~r~~dG~WKI~~~~v~ 816 (819)
-++++.|+|.+ |+|||..=.|+
T Consensus 128 G~y~D~l~r~~-~gwri~~R~v~ 149 (163)
T 3eby_A 128 GKYVDRFDLSG-GTVRLKSRTCI 149 (163)
T ss_dssp EEEEEEEECCT-TCCEEEEEEEE
T ss_pred EEEEEEEEEEC-CEEEEEEEEEE
Confidence 36788999975 68999876553
No 77
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}
Probab=38.43 E-value=88 Score=27.89 Aligned_cols=19 Identities=16% Similarity=0.478 Sum_probs=12.5
Q ss_pred eEEEEEEEEcCCCceeEeec
Q 003442 794 YKIRYVLRKKDDGTWRFCKG 813 (819)
Q Consensus 794 y~vRY~L~r~~dG~WKI~~~ 813 (819)
++..+.++|. ||+|||...
T Consensus 105 ~r~T~v~~r~-~g~W~ivh~ 123 (142)
T 3f7s_A 105 MRATVGYRRQ-GGQWQVIHE 123 (142)
T ss_dssp EEEEEEEEEE-TTEEEEEEE
T ss_pred eEEEEEEEEe-CCEEEEEEE
Confidence 3444457776 479999753
No 78
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=38.39 E-value=42 Score=28.34 Aligned_cols=65 Identities=8% Similarity=-0.022 Sum_probs=48.2
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhc
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSK 240 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~ 240 (819)
++...|+++.++++-+..++...... | ....+.++..+|.-.+..+++.+|.+.+++++++.++.
T Consensus 58 ~~~~~g~~~~A~~~~~~a~~~~~~~~---~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 122 (164)
T 3ro3_A 58 AYIFLGEFETASEYYKKTLLLARQLK---D-RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhC---C-cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Confidence 34578999999999999885211111 1 12346667788888888999999999999999998765
No 79
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=36.51 E-value=1e+02 Score=26.84 Aligned_cols=55 Identities=15% Similarity=-0.027 Sum_probs=38.5
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
++.+.|+++.+++.-+.+++-.. ... -|+.-+|.-.+..+++.+|.+.+++++++
T Consensus 56 ~~~~~~~~~~A~~~~~~al~~~p---~~~-------~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 56 CLTKLMEFQRALDDCDTCIRLDS---KFI-------KGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT---TCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhhh---hhh-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45678999999998888886311 112 24555555566678888888888888876
No 80
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=36.45 E-value=51 Score=30.98 Aligned_cols=89 Identities=13% Similarity=0.075 Sum_probs=66.8
Q ss_pred HHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhc-cCCCCchhHHHHHHHHhhhChhhHHhhhCCCCCcchHHHHHHH
Q 003442 205 SMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSK-VSLGNMPLLSQIEESLEELAPACTLELLGMPHSPENAERRRGA 283 (819)
Q Consensus 205 s~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~-~~la~p~lq~eI~~~L~~L~PyriLELLalPl~~e~~~Rr~gg 283 (819)
=-|+-.+..|+.+.++++++...+.+.+|+..+..= ..| +++.=.+|-+.|..|==|++-+|+.--+.. ..+.=.+.
T Consensus 34 dgal~~l~~A~~ai~~~d~~~k~~~i~KA~~Ii~~L~~sL-d~e~GgeiA~nL~~LY~y~~~~L~~An~~~-d~~~l~ev 111 (131)
T 3iqc_A 34 EGILRFSSQAKRCIENEDIEKKIYYINRVTDIFTELLNIL-DYEKGGEVAVYLTGLYTHQIKVLTQANVEN-DASKIDLV 111 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTB-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc-CCccccHHHHHHHHHHHHHHHHHHHhhhhc-CHHHHHHH
Confidence 347889999999999999999999999999988532 344 245446999999999999998887665533 23455555
Q ss_pred HHHHHHHH--HcCc
Q 003442 284 IAALRELI--RQGL 295 (819)
Q Consensus 284 L~lLr~~L--RgGi 295 (819)
+.+|.++. |.++
T Consensus 112 ~~ll~~lr~aW~~i 125 (131)
T 3iqc_A 112 LNVARGLLEAWREI 125 (131)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66777766 5544
No 81
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=36.37 E-value=99 Score=27.76 Aligned_cols=65 Identities=12% Similarity=-0.080 Sum_probs=46.8
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhc
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSK 240 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~ 240 (819)
++...|+++.++++-++.++.....+. .-..+.++..+|.-.+..+++..|.+.+++++++.++.
T Consensus 35 ~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 99 (203)
T 3gw4_A 35 VYAFMDRFDEARASFQALQQQAQKSGD----HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL 99 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHcCC----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 345679999999988888852211111 12345667778888888899999999999999988755
No 82
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=36.29 E-value=84 Score=35.24 Aligned_cols=65 Identities=9% Similarity=0.106 Sum_probs=49.4
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCC--CCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhc
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNA--KPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSK 240 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~--~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~ 240 (819)
++...|+|+.++.+.++.|.-... -+..+| +|.++-.+|.-.+.++++++|..++++|+.++++.
T Consensus 360 ~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~----~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~ 426 (490)
T 3n71_A 360 VLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ----LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVT 426 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 567789999999999999852110 011234 45566778888888999999999999999999765
No 83
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=36.00 E-value=74 Score=26.50 Aligned_cols=58 Identities=9% Similarity=-0.035 Sum_probs=40.5
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
.+.+.|+|+.++++-+.+++.....+...++.+.+ |.-.+..+++..|...+++++++
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l-------g~~~~~~~~~~~A~~~~~~~~~~ 68 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPNGVYTPNALYWL-------GESYYATRNFQLAEAQFRDLVSR 68 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHH-------HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHH-------HHHHHHhccHHHHHHHHHHHHHH
Confidence 45678999999999999997433334444444444 44445678888888888887764
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=35.39 E-value=52 Score=31.73 Aligned_cols=66 Identities=17% Similarity=0.118 Sum_probs=50.1
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHH---hhhchhhHHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAF---EKNNVSQGFEALARAQCLL 237 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~---e~~~~~~~~e~Le~al~LL 237 (819)
++.+.|+|+.+++.-+.+++.....+...+..+-++.+|..++.... ..+++.+|...++++++.-
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 45788999999999999997544455678889999999988875532 3467777777777766543
No 85
>1uli_B Biphenyl dioxygenase small subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: d.17.4.4 PDB: 1ulj_B* 3en1_B* 3eqq_B
Probab=35.31 E-value=1.1e+02 Score=29.70 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=13.8
Q ss_pred EEEEEEcCCC-ceeEeecccc
Q 003442 797 RYVLRKKDDG-TWRFCKGDIQ 816 (819)
Q Consensus 797 RY~L~r~~dG-~WKI~~~~v~ 816 (819)
.+.|+|.++| +|||..=.|+
T Consensus 152 ~D~l~r~~~~~gwri~~R~v~ 172 (187)
T 1uli_B 152 KDILRRTGSEAGFELAKRTIL 172 (187)
T ss_dssp EEEEEECSSTTCEEEEEEEEE
T ss_pred EEEEEECCCccceEEEEEEEE
Confidence 3778887531 7999876543
No 86
>2rgq_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.80A {Nostoc punctiforme} SCOP: d.17.4.25
Probab=34.70 E-value=1.3e+02 Score=27.15 Aligned_cols=20 Identities=25% Similarity=0.498 Sum_probs=14.8
Q ss_pred EEEEEEEEcCCCceeEeeccc
Q 003442 795 KIRYVLRKKDDGTWRFCKGDI 815 (819)
Q Consensus 795 ~vRY~L~r~~dG~WKI~~~~v 815 (819)
++.+.++|.+ |+|||..-.+
T Consensus 106 ~y~d~~~r~d-g~Wri~~r~~ 125 (144)
T 2rgq_A 106 FVKDQVRKIN-GKWYLILRQI 125 (144)
T ss_dssp EEEEEEEEET-TEEEEEEEEE
T ss_pred EEEEEEEEEC-CEEEEEEEEE
Confidence 4566788875 6899998655
No 87
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=34.04 E-value=1.1e+02 Score=27.03 Aligned_cols=55 Identities=13% Similarity=0.021 Sum_probs=41.0
Q ss_pred HHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 003442 173 LQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLL 237 (819)
Q Consensus 173 LqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL 237 (819)
+...|+|+.+++..+.+|+-.. ... -|+.-+|.-.+..+++..|...+++++++-
T Consensus 73 ~~~~~~~~~A~~~~~~al~~~p---~~~-------~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 73 YLNIGDLHEAEETSSEVLKREE---TNE-------KALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHTCHHHHHHHHHHHHHHST---TCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCcHHHHHHHHHHHHhcCC---cch-------HHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 4578999999999999996321 112 245556666667788999999999998884
No 88
>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*
Probab=33.33 E-value=1.1e+02 Score=27.17 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=13.3
Q ss_pred eEEEEEEEEcCCCceeEeec
Q 003442 794 YKIRYVLRKKDDGTWRFCKG 813 (819)
Q Consensus 794 y~vRY~L~r~~dG~WKI~~~ 813 (819)
++..+.+++. ||+|||...
T Consensus 114 ~r~T~v~~k~-~g~Wkivh~ 132 (143)
T 2ux0_A 114 SEETRVWHRR-DGKWLNVHY 132 (143)
T ss_dssp EEEEEEEEEE-TTEEEEEEE
T ss_pred EEEEEEEEEE-CCEEEEEEE
Confidence 4555577776 479999864
No 89
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=32.59 E-value=68 Score=27.98 Aligned_cols=61 Identities=11% Similarity=0.031 Sum_probs=45.3
Q ss_pred HHHHcCchHHHHHHHHhhcCC-CCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQH-PNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~-~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
++.+.|+|+.+++.-+.+|+- |.... .--.+|-+|..+|.-....+++..|.+.+++++++
T Consensus 51 ~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 51 VYFEEKKFAECVQFCEKAVEVGRETRA----DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhCcccch----hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 467899999999999999862 11111 11235667777887778889999999999999874
No 90
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=32.18 E-value=79 Score=26.65 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=39.5
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLL 237 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL 237 (819)
++...|+|+.+++.-+++++... ...++...+ |.-.+..+++..|.+.+++++++-
T Consensus 36 ~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 36 TFRTLGEYRKAEAVLANGVKQFP---NHQALRVFY-------AMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHH-------HHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC---CchHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 56788999999999999996321 124444444 444455678888888999988764
No 91
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=31.71 E-value=92 Score=26.93 Aligned_cols=55 Identities=15% Similarity=0.001 Sum_probs=38.8
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
.+.+.|+++.+++.-+.+++... ...+ ++..+|.-....+++..|...+++++++
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~P---~~~~-------a~~~lg~~~~~~g~~~~A~~~~~~al~l 80 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKEP---EREE-------AWRSLGLTQAENEKDGLAIIALNHARML 80 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST---TCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCC---CCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45678999999999999996321 1223 3444555555677888888888888876
No 92
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=31.56 E-value=3.2e+02 Score=25.35 Aligned_cols=54 Identities=20% Similarity=0.064 Sum_probs=38.4
Q ss_pred HHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 173 LQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 173 LqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
+...|+++.++++-+.+++... ...+ ++..+|.-.+..+++..|.+.+++++++
T Consensus 47 ~~~~~~~~~A~~~~~~al~~~~---~~~~-------~~~~la~~~~~~~~~~~A~~~~~~a~~~ 100 (252)
T 2ho1_A 47 YLQRGNTEQAKVPLRKALEIDP---SSAD-------AHAALAVVFQTEMEPKLADEEYRKALAS 100 (252)
T ss_dssp HHHTTCTGGGHHHHHHHHHHCT---TCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCC---ChHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4678999999999988886321 1122 3445555556678898999999988876
No 93
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=31.47 E-value=90 Score=27.80 Aligned_cols=57 Identities=11% Similarity=-0.005 Sum_probs=39.8
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLR 238 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~ 238 (819)
++...|+|+.+++.-+.+++.... . +-++..+|.-.+..+++..|.+.+++++++--
T Consensus 54 ~~~~~g~~~~A~~~~~~al~~~p~---~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 54 AYSASGQHEKAAEDAELATVVDPK---Y-------SKAWSRLGLARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT---C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC---C-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 456789999999999988863211 1 23345555555667888888888888888763
No 94
>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}
Probab=30.38 E-value=1.4e+02 Score=27.27 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=14.0
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 003442 686 RPMPLEEAEALVKQWQAI 703 (819)
Q Consensus 686 ~~Lt~~~Ae~lV~~Wq~a 703 (819)
...+.++-++++.+|..+
T Consensus 15 ~~~d~~~I~~~~~~~~~A 32 (156)
T 3h51_A 15 ADGEAREVAALFDTWNAA 32 (156)
T ss_dssp SSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 356788888999998765
No 95
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=30.32 E-value=1.2e+02 Score=23.46 Aligned_cols=55 Identities=13% Similarity=0.159 Sum_probs=38.8
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
++...|+++.++++-+..++... ...+ ++..+|.-.+..+++..|...+++++++
T Consensus 18 ~~~~~~~~~~A~~~~~~a~~~~~---~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 18 AYYKQGDYDEAIEYYQKALELDP---NNAE-------AWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT---TCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhcCC---CCHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678999999999999986321 1123 3444555556678898898899988876
No 96
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=30.32 E-value=2.5e+02 Score=28.14 Aligned_cols=41 Identities=24% Similarity=0.231 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHhhcc--cCCchhHHHHHHHHhhCChhHHHHH
Q 003442 373 ELISKAKTICDCLIAS--ESIDLKFEEAFCLFLLGQGTEAEAV 413 (819)
Q Consensus 373 ~lI~~A~~~l~~L~~~--~~~Dv~lE~avC~LLLGq~~eA~~~ 413 (819)
....+|..+++++... ...++...+|+|+.-+|+.++|...
T Consensus 180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 222 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV 222 (291)
T ss_dssp THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4566777777777532 2445666788888889999988765
No 97
>1wql_B Ethylbenzene dioxygenase small subunit; biphenyl dioxygenase, cumene dioxygenase; 2.20A {Pseudomonas fluorescens} SCOP: d.17.4.4
Probab=30.27 E-value=1.2e+02 Score=29.51 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=13.8
Q ss_pred EEEEEEcCCC--ceeEeecccc
Q 003442 797 RYVLRKKDDG--TWRFCKGDIQ 816 (819)
Q Consensus 797 RY~L~r~~dG--~WKI~~~~v~ 816 (819)
.+.|+|.+ | +|||..=.|+
T Consensus 151 ~D~l~r~~-~~~~wri~~R~v~ 171 (186)
T 1wql_B 151 RDILLRVS-DGLGFKIAKRTIL 171 (186)
T ss_dssp EEEEEECS-STTSEEEEEEEEE
T ss_pred EEEEEECC-CccceEEEEEEEE
Confidence 37788875 5 7999876543
No 98
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=29.68 E-value=53 Score=28.69 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=29.9
Q ss_pred HHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 204 LSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 204 Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
--.|+|+.++|...+.+++|.+|.+..++|+++
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~ 37 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL 37 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346899999999999999999999999999876
No 99
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=28.94 E-value=1.4e+02 Score=24.38 Aligned_cols=55 Identities=7% Similarity=-0.068 Sum_probs=39.4
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
++.+.|+++.++++-+.+++.... ..+ ++..+|.-.+..+++..|...+++++++
T Consensus 25 ~~~~~~~~~~A~~~~~~al~~~~~---~~~-------~~~~la~~~~~~~~~~~A~~~~~~a~~~ 79 (133)
T 2lni_A 25 ECFQKGDYPQAMKHYTEAIKRNPK---DAK-------LYSNRAACYTKLLEFQLALKDCEECIQL 79 (133)
T ss_dssp HHHHTTCSHHHHHHHHHHHTTCTT---CHH-------HHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC---cHH-------HHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 456889999999999999974221 123 3445555556678888888888888875
No 100
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=28.82 E-value=1.6e+02 Score=27.45 Aligned_cols=45 Identities=13% Similarity=0.045 Sum_probs=35.2
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCc--hhhHHHHHHHHhHHHHHHHHh
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPY--AHDFLLSMALAECAIAKVAFE 219 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~--~~Dv~Ls~ALA~~elare~~e 219 (819)
++.+.|+++.+++.-+.+++. .|. ..+....++.+|...++..++
T Consensus 126 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l~~~~~~~~~~~~~ 172 (228)
T 4i17_A 126 KFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSLGVLFYNNGADVLR 172 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999974 233 567888888889888887433
No 101
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=27.72 E-value=1.8e+02 Score=26.72 Aligned_cols=65 Identities=6% Similarity=-0.069 Sum_probs=43.6
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCC------chhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKP------YAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~------~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
.+...|+|+.++++-+.+++-....+ ...+..-..+-++..+|.-.+..+++..|...+++++++
T Consensus 47 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 47 EFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44678999999999999986322222 111111112355666677677788999999999999886
No 102
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=27.52 E-value=1.9e+02 Score=27.79 Aligned_cols=89 Identities=9% Similarity=-0.036 Sum_probs=54.5
Q ss_pred HHHHHcCchHHHHHHHHhhcCCC-CCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhc-cCCC-Cch
Q 003442 171 CLLQEVGEEKLVLDIGRAALQHP-NAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSK-VSLG-NMP 247 (819)
Q Consensus 171 ~LLqE~GE~elVl~lg~~~L~~~-~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~-~~la-~p~ 247 (819)
..|.++|.|+.++.....+|+-- ..-...+|-.-+-.=|+.-.|.--..-+++++|.+.+++|+++--.. +-.. .-.
T Consensus 65 ~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 65 EALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 34778999999999999999620 00000222211111133556665566789999999999999998544 3331 023
Q ss_pred hHHHHHHHHhhh
Q 003442 248 LLSQIEESLEEL 259 (819)
Q Consensus 248 lq~eI~~~L~~L 259 (819)
+...|++-.++|
T Consensus 145 ~~~~~~~~~~k~ 156 (159)
T 2hr2_A 145 MMEVAIDRIAQL 156 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 456676666655
No 103
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=27.42 E-value=91 Score=27.94 Aligned_cols=55 Identities=13% Similarity=0.053 Sum_probs=35.9
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
++...|+++.+++.-++.++.. |...+ ++..+|.-.+..+++++|.+.+++|+++
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~---p~~~~-------~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 116 VYDSMGEHDKAIEAYEKTISIK---PGFIR-------AYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC---TTCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhCCchhHHHHHHHHHHhc---chhhh-------HHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 3566788888888888877532 11222 3444555556677888888888888764
No 104
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=27.05 E-value=79 Score=25.44 Aligned_cols=55 Identities=7% Similarity=-0.025 Sum_probs=38.4
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
.+...|+|+.+++.-+.+++.... .. -++..+|.-.+..+++..|.+.+++++++
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~---~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 13 SLFKQGLYREAVHCYDQLITAQPQ---NP-------VGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTT---CH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC---CH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 456789999999999999863221 12 23445555556678888888888888765
No 105
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=26.05 E-value=1.3e+02 Score=23.93 Aligned_cols=56 Identities=16% Similarity=0.061 Sum_probs=38.2
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
.+...|+++.+++.-+.+++... ...+ -++..+|.-.+..+++..|.+.+++++++
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p---~~~~------~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEP---VGKD------EAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCS---STHH------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCC---CcHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 45678999999999999986321 1122 13344444445667888888888888876
No 106
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=25.94 E-value=2.8e+02 Score=23.07 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=40.7
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHh
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRS 239 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~ 239 (819)
++...|+++.+++.-+.+++... ...+ ++..+|.-.+..+++..|.+.+++++++--.
T Consensus 52 ~~~~~~~~~~A~~~~~~al~~~p---~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 52 CYLKMQQPEQALADCRRALELDG---QSVK-------AHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT---TCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCc---hhHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 34578999999999999886321 1122 3444555556668888899999999988754
No 107
>3cnx_A Uncharacterized protein; putative dehydratase, NTF2-like protein, structural genomics center for structural genomics, JCSG; HET: MSE PGE PG6; 2.10A {Streptomyces avermitilis} SCOP: d.17.4.17
Probab=25.65 E-value=2.2e+02 Score=27.56 Aligned_cols=19 Identities=16% Similarity=0.398 Sum_probs=13.6
Q ss_pred eEEEEEEEEcCCCceeEeec
Q 003442 794 YKIRYVLRKKDDGTWRFCKG 813 (819)
Q Consensus 794 y~vRY~L~r~~dG~WKI~~~ 813 (819)
+++.|.++|.+ |+|||...
T Consensus 133 ~raT~Vfrr~~-ggWriv~h 151 (170)
T 3cnx_A 133 VVATNVFRRTP-DGWKLWSH 151 (170)
T ss_dssp EEEEEEEECCT-TCCEEEEE
T ss_pred EEEEEEEEEEC-CEEEEEEE
Confidence 45667777765 67999864
No 108
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=25.61 E-value=1.5e+02 Score=23.99 Aligned_cols=55 Identities=18% Similarity=0.168 Sum_probs=38.6
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
++.+.|+++.++++-+.++..... + +.++..+|.-.+..+++..|.+.+++++++
T Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~-----~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 75 (131)
T 2vyi_A 21 EQMKVENFEAAVHFYGKAIELNPA-----N-----AVYFCNRAAAYSKLGNYAGAVQDCERAICI 75 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-----C-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHcCCC-----C-----HHHHHHHHHHHHHhhchHHHHHHHHHHHhc
Confidence 445789999999999998863211 1 234555555566778888888888888775
No 109
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=25.15 E-value=1.3e+02 Score=24.69 Aligned_cols=56 Identities=13% Similarity=-0.007 Sum_probs=40.1
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLL 237 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL 237 (819)
++.+.|+++.++++-+.+++... ...+ ++..+|.-.+..+++..|.+.+++++++-
T Consensus 59 ~~~~~~~~~~A~~~~~~a~~~~~---~~~~-------~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 59 CYTKLLEFQLALKDCEECIQLEP---TFIK-------GYTRKAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHTTTTCHHHHHHHHHHHHHHCT---TCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhccHHHHHHHHHHHHHhCC---CchH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 35778999999999999986321 1122 34455555567788999999999988763
No 110
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=25.03 E-value=1.6e+02 Score=23.38 Aligned_cols=55 Identities=15% Similarity=0.054 Sum_probs=38.0
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
.+...|+++.++++-+..+.... ...+ ++..+|.-.+..+++..|.+.+++++++
T Consensus 13 ~~~~~~~~~~A~~~~~~~~~~~~---~~~~-------~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 13 KALSVGNIDDALQCYSEAIKLDP---HNHV-------LYSNRSAAYAKKGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT---TCHH-------HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCC---CcHH-------HHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 44678999999999999886321 1122 3444455556677888888888888876
No 111
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=25.00 E-value=1.5e+02 Score=24.00 Aligned_cols=58 Identities=17% Similarity=-0.009 Sum_probs=41.8
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHh
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRS 239 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~ 239 (819)
++.+.|+++.++++-+..++.... + +.++..+|.-.+..+++..|...+++++++-..
T Consensus 13 ~~~~~~~~~~A~~~~~~a~~~~~~-----~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (131)
T 1elr_A 13 DAYKKKDFDTALKHYDKAKELDPT-----N-----MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-----C-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-----c-----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc
Confidence 456789999999999999863211 1 233455555566778899999999999887643
No 112
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=24.83 E-value=1.3e+02 Score=26.75 Aligned_cols=56 Identities=14% Similarity=-0.006 Sum_probs=41.0
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLL 237 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL 237 (819)
++.+.|+|+.++++-+.+++.... + +-++..+|.-.+..+++..|.+.+++++++-
T Consensus 20 ~~~~~g~~~~A~~~~~~al~~~p~-----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 75 (164)
T 3sz7_A 20 AAMARKEYSKAIDLYTQALSIAPA-----N-----PIYLSNRAAAYSASGQHEKAAEDAELATVVD 75 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-----C-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-----C-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 456889999999999999963211 1 2345556666667788999999999888763
No 113
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=24.58 E-value=1.6e+02 Score=23.80 Aligned_cols=56 Identities=11% Similarity=-0.070 Sum_probs=39.9
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLL 237 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL 237 (819)
++...|+++.++++-+.++.... ...+ ++..+|.-.+..+++..|...+++++++-
T Consensus 55 ~~~~~~~~~~A~~~~~~~~~~~~---~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 55 AYSKLGNYAGAVQDCERAICIDP---AYSK-------AYGRMGLALSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT---TCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHhhchHHHHHHHHHHHhcCc---cCHH-------HHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 45678999999999999986321 1122 34455555566788989999999888763
No 114
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.06 E-value=1.6e+02 Score=24.72 Aligned_cols=56 Identities=9% Similarity=-0.047 Sum_probs=37.9
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLL 237 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL 237 (819)
++...|+++.++++-+..++... ...++ +..+|.-.+..+++..|...+++++++-
T Consensus 74 ~~~~~~~~~~A~~~~~~~~~~~~---~~~~~-------~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 74 CHLKLEDYDKAETEASKAIEKDG---GDVKA-------LYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTS---CCHHH-------HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHccHHHHHHHHHHHHhhCc---cCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 35678999999999998886321 11333 3344444455678888888888888763
No 115
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=24.00 E-value=1.1e+02 Score=25.63 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhhc--ccCCchhHHHHHHHHhhCChhHHHHH
Q 003442 374 LISKAKTICDCLIA--SESIDLKFEEAFCLFLLGQGTEAEAV 413 (819)
Q Consensus 374 lI~~A~~~l~~L~~--~~~~Dv~lE~avC~LLLGq~~eA~~~ 413 (819)
-..+|...|++... ....++....|.|..-+|+.++|...
T Consensus 42 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 42 EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 34667777766642 24568889999999999999999865
No 116
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=23.93 E-value=1.5e+02 Score=24.77 Aligned_cols=55 Identities=5% Similarity=-0.117 Sum_probs=39.7
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
.+...|+|+.+++.-+.+++.... . +-++..+|.-.+..+++..|.+.+++++++
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~---~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 67 (126)
T 3upv_A 13 EYFTKSDWPNAVKAYTEMIKRAPE---D-------ARGYSNRAAALAKLMSFPEAIADCNKAIEK 67 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT---C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCC---C-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356789999999999999863211 1 234555555566778888888899888876
No 117
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=23.67 E-value=5e+02 Score=25.00 Aligned_cols=65 Identities=14% Similarity=0.053 Sum_probs=41.9
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHH-----HHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSM-----ALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~-----ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
++...|+++.+++.-+.+++.........++...+ +..+...|...+..+++..|.+.++++++.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 149 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV 149 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 45678999999999999997422000223333222 223344556667788888888888888764
No 118
>2gbw_B Biphenyl 2,3-dioxygenase beta subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_B* 2ckf_B
Probab=23.54 E-value=1.9e+02 Score=27.41 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=16.6
Q ss_pred eEEEEEEEEcCCCceeEeecccc
Q 003442 794 YKIRYVLRKKDDGTWRFCKGDIQ 816 (819)
Q Consensus 794 y~vRY~L~r~~dG~WKI~~~~v~ 816 (819)
-++.+.|+|.+ |+|||..=.|+
T Consensus 138 G~y~D~l~r~~-~~wri~~R~v~ 159 (174)
T 2gbw_B 138 LGREDKLRRDG-NGFKVFRRKLI 159 (174)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEE
T ss_pred EEEEEEEEEcC-CEEEEEEEEEE
Confidence 46788899975 57999976553
No 119
>2bmo_B Oxygenase-beta NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: d.17.4.4 PDB: 2bmq_B 2bmr_B* 1o7n_B 1ndo_B 1o7g_B* 1o7h_B 1o7m_B 1eg9_B 1o7p_B* 1o7w_B 1uuv_B 1uuw_B 2hmj_B 2hmk_B* 2hml_B* 2hmm_B* 2hmn_B* 2hmo_B*
Probab=23.18 E-value=1.6e+02 Score=29.01 Aligned_cols=22 Identities=5% Similarity=0.075 Sum_probs=16.8
Q ss_pred eEEEEEEEEcCCCc-eeEeecccc
Q 003442 794 YKIRYVLRKKDDGT-WRFCKGDIQ 816 (819)
Q Consensus 794 y~vRY~L~r~~dG~-WKI~~~~v~ 816 (819)
-+++|.|+|.+ |+ |||..=.|.
T Consensus 157 G~y~D~l~r~~-~g~wri~~R~v~ 179 (194)
T 2bmo_B 157 ATREDKWKRIE-GGGIKLVERFVD 179 (194)
T ss_dssp EEEEEEEEECT-TSCEEEEEEEEE
T ss_pred EEEEEEEEECC-CCCEEEEEEEEE
Confidence 36889999976 56 999976553
No 120
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=23.08 E-value=1.8e+02 Score=23.23 Aligned_cols=55 Identities=13% Similarity=0.159 Sum_probs=36.1
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
++.+.|+++.++++-+..++... ...+ ++..++.-.+..++++.|...+++++++
T Consensus 52 ~~~~~~~~~~A~~~~~~~~~~~~---~~~~-------~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 52 AYYKQGDYDEAIEYYQKALELDP---NNAE-------AWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT---TCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCC---ccHH-------HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45678999999998888886321 1122 2334444555667888888888887765
No 121
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=23.06 E-value=2.5e+02 Score=26.27 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=61.4
Q ss_pred HHHHhHHHHHHHHhhhch-hhH---HHHHHHHHHHHHhc-cCCCCchhHHHHHHHHhhhChhhHHhhhCCCCCcchHHHH
Q 003442 206 MALAECAIAKVAFEKNNV-SQG---FEALARAQCLLRSK-VSLGNMPLLSQIEESLEELAPACTLELLGMPHSPENAERR 280 (819)
Q Consensus 206 ~ALA~~elare~~e~~~~-~~~---~e~Le~al~LL~~~-~~la~p~lq~eI~~~L~~L~PyriLELLalPl~~e~~~Rr 280 (819)
-||-.+..|+.+++++++ +.. .+.+.+|+..+..= ..| +++.-.+|-..|..|==|++-+|-.+--| .+.=
T Consensus 28 gai~~l~~A~~ai~~~d~~~~k~~~~~~i~KA~~Ii~eL~~sL-d~e~GgeiA~nL~~LY~y~~~~LAn~~~d---~~~l 103 (130)
T 1orj_A 28 KAIECLERAIEIYDQVNELEKRKEFVENIDRVYDIISALKSFL-DHEKGKEIAKNLDTIYTIILNTLVKVDKT---KEEL 103 (130)
T ss_dssp HHHHHHHHHHHTGGGTTSHHHHHHHHHHHHHHHHHHHHHHHTC-CTTTSHHHHHHHHHHHHHHHHHHHCTTCC---HHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccCcHHHHHHHHHHHHHHHHHhcccCC---HHHH
Confidence 388899999999999999 988 99999999999432 445 25544799999999999999998222222 3454
Q ss_pred HHHHHHHHHHH
Q 003442 281 RGAIAALRELI 291 (819)
Q Consensus 281 ~ggL~lLr~~L 291 (819)
.+.+.+|.++.
T Consensus 104 ~ev~~ll~~lr 114 (130)
T 1orj_A 104 QKILEILKDLR 114 (130)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55566666665
No 122
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.97 E-value=2.1e+02 Score=29.35 Aligned_cols=80 Identities=13% Similarity=0.008 Sum_probs=54.6
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhccCCCCchhHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKVSLGNMPLLSQ 251 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~~~la~p~lq~e 251 (819)
++.+.|+|+.++++-+.++..-.......+ .+-++..+++-....+++..|-..+++++..-...+.. +.++..
T Consensus 144 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~ 217 (434)
T 4b4t_Q 144 LHYQKKQYKDSLALINDLLREFKKLDDKPS----LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP--TQTVAE 217 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSSCSTH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HHHHHH
T ss_pred HHHHccChHHHHHHHHHHHHHHHhcccchh----HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc--hHHHHH
Confidence 457889999999999888853221111222 23457778888888999999999999999887655433 455566
Q ss_pred HHHHHh
Q 003442 252 IEESLE 257 (819)
Q Consensus 252 I~~~L~ 257 (819)
+..-+.
T Consensus 218 ~~~~~g 223 (434)
T 4b4t_Q 218 LDLMSG 223 (434)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 123
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=22.52 E-value=2e+02 Score=27.49 Aligned_cols=102 Identities=13% Similarity=0.129 Sum_probs=62.7
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhccCCCCchhHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRSKVSLGNMPLLSQ 251 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~~~la~p~lq~e 251 (819)
.+...|+|+.++++-+.+++.....+...++ +..+|.-.+..+++..|.+.+++++++--..... +...-.
T Consensus 24 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a-------~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--~~a~~~ 94 (261)
T 3qky_A 24 EFYNQGKYDRAIEYFKAVFTYGRTHEWAADA-------QFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV--PQAEYE 94 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHGGGCSCSTTHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH--HHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCcchHHH-------HHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh--HHHHHH
Confidence 4567899999999999999754433443444 4445555567789999999999888764222121 233334
Q ss_pred HHHHHhhhChhhHHhhhCCCCCcchHHHHHHHHHHHHHHHH
Q 003442 252 IEESLEELAPACTLELLGMPHSPENAERRRGAIAALRELIR 292 (819)
Q Consensus 252 I~~~L~~L~PyriLELLalPl~~e~~~Rr~ggL~lLr~~LR 292 (819)
+-..+.++.|. .-. ...+-..|+..++.++.
T Consensus 95 lg~~~~~~~~~-------~~~---~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 95 RAMCYYKLSPP-------YEL---DQTDTRKAIEAFQLFID 125 (261)
T ss_dssp HHHHHHHHCCC-------TTS---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccc-------ccc---cchhHHHHHHHHHHHHH
Confidence 44444443331 011 12466677888888884
No 124
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=22.25 E-value=1.7e+02 Score=24.43 Aligned_cols=56 Identities=14% Similarity=-0.092 Sum_probs=41.0
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLL 237 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL 237 (819)
.+...|+|+.+++.-+.++..... . +-++..+|.-.+..+++..|...+++++++-
T Consensus 18 ~~~~~~~~~~A~~~~~~al~~~~~---~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 73 (137)
T 3q49_B 18 RLFVGRKYPEAAACYGRAITRNPL---V-------AVYYTNRALCYLKMQQPEQALADCRRALELD 73 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT---C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCcHHHHHHHHHHHHhhCcC---c-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456889999999999999863221 1 2345566666677888888888998888763
No 125
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=22.16 E-value=2.8e+02 Score=25.29 Aligned_cols=54 Identities=13% Similarity=0.061 Sum_probs=38.7
Q ss_pred HHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 173 LQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 173 LqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
+...|+|+.+++.-+.+++... ...+ ++..+|.-.+..+++..|.+.+++++++
T Consensus 98 ~~~~~~~~~A~~~~~~al~~~p---~~~~-------~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 98 YNKNKDYPKAIDHASKVLKIDK---NNVK-------ALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST---TCHH-------HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCc---ccHH-------HHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4578999999999999997421 1223 3444555555677888888899988876
No 126
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=22.14 E-value=1.7e+02 Score=23.50 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=36.8
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
++.+.|+++.++++-+..++.... ..+ ++..++.-.+..+++..|...+++++++
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~~~---~~~-------~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELDPR---SAE-------AWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTT---CHH-------HHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCC---ChH-------HHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 456789999999988888863211 122 2344555556678888888888887754
No 127
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=21.78 E-value=48 Score=31.76 Aligned_cols=86 Identities=14% Similarity=0.113 Sum_probs=64.7
Q ss_pred HHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHhc-cCCCCchhHHHHHHHHhhhChhhHHhhhCCCCCcchHHHHHHHH
Q 003442 206 MALAECAIAKVAFEKNNVSQGFEALARAQCLLRSK-VSLGNMPLLSQIEESLEELAPACTLELLGMPHSPENAERRRGAI 284 (819)
Q Consensus 206 ~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~~-~~la~p~lq~eI~~~L~~L~PyriLELLalPl~~e~~~Rr~ggL 284 (819)
-||-.+..|+.+.++++++...+.+.+|+.++..= ..| +++ .+|-..|..|==|++-+|+.--+.. ..+.=.+.+
T Consensus 32 gal~~l~~A~~aie~~d~~~k~~~i~KA~~Ii~eL~~sL-d~e--geiA~nL~~LY~y~~~~L~~Ani~~-D~~~ldev~ 107 (145)
T 1vh6_A 32 GCLKFIRLAAQAIENDDMERKNENLIKAQNIIQELNFTL-NRN--IELSASMGAMYDYMYRRLVQANIKN-DTGMLAEVE 107 (145)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHTTHHHHHHHHHHHHHHHHHHHT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHc-CCc--hHHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHH
Confidence 48889999999999999999999999999999421 333 244 8999999999999999988655532 134545556
Q ss_pred HHHHHHH--HcCc
Q 003442 285 AALRELI--RQGL 295 (819)
Q Consensus 285 ~lLr~~L--RgGi 295 (819)
.+|.++. |.++
T Consensus 108 ~ll~~LreaW~~i 120 (145)
T 1vh6_A 108 GYVTDFRDAWKQA 120 (145)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666 5443
No 128
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=21.64 E-value=1.5e+02 Score=29.97 Aligned_cols=63 Identities=11% Similarity=0.110 Sum_probs=47.5
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHHHh
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLLRS 239 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL~~ 239 (819)
++.+.|+++.+.++-++.|........ .+ .+.++..+|+-.+..+++..|.+.+++++.+...
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~~~~~~-~~----~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 144 LLWAWARLDEAEASARSGIEVLSSYQP-QQ----QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTSCG-GG----GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHHHHHhhccCc-HH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 568999999999999999864322111 12 2356677888888899999999999999988754
No 129
>3ke7_A Putative ketosteroid isomerase; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc 8503}
Probab=21.42 E-value=2e+02 Score=26.69 Aligned_cols=52 Identities=15% Similarity=0.361 Sum_probs=28.0
Q ss_pred EEEeeceeEEEEEEeeccCCCCceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEee
Q 003442 743 WRFVLLQLTIVQADIISHGGVGEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFCK 812 (819)
Q Consensus 743 w~Y~l~~L~I~sV~v~~d~~~~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~~ 812 (819)
.+|++++..|. + +++.|.+.-+++ +..+++ ....++.+.+.|..||.|||..
T Consensus 73 ~~~ei~~p~V~---v-----~gD~A~~~y~l~---~~~~~~-------~~~~r~T~V~~r~~dG~W~ivH 124 (134)
T 3ke7_A 73 DHFDMIRPVVQ---V-----AQNIAVLTFNLD---SYLSDK-------VIKWNCTEVYRRNPDNQWKIIQ 124 (134)
T ss_dssp SEEEEEEEEEE---E-----ETTEEEEEEEEE---EEETTE-------EEEEEEEEEEEECTTSBEEEEE
T ss_pred ceEEEeCCeEE---E-----eCceEEEEEEEE---EeeCCC-------cEEEEEEEEEEEcCCCcEEEEE
Confidence 45666665543 2 246888855542 122211 1233455555676368999975
No 130
>3hzp_A NTF2-like protein of unknown function; YP_291699.1, structural genomics, joint center structural genomics, JCSG; HET: MSE 1PE; 1.40A {Prochlorococcus marinus}
Probab=21.17 E-value=2.3e+02 Score=26.97 Aligned_cols=51 Identities=10% Similarity=0.172 Sum_probs=29.5
Q ss_pred eEEEEEEeeccCCCCceeEEEEEEEEeEEecccCCCCCCCCccceEEEEEEEEcCCCceeEe
Q 003442 750 LTIVQADIISHGGVGEIAEIEAVLEEAAELVDESQPKNPNYYSSYKIRYVLRKKDDGTWRFC 811 (819)
Q Consensus 750 L~I~sV~v~~d~~~~~~A~VeA~V~E~a~Lyd~~~~~~~Sy~~ty~vRY~L~r~~dG~WKI~ 811 (819)
++|.++++..| +.|.|-.++.|..++. |++- ++.+++-=.+++. ||+|||.
T Consensus 65 ~ki~~le~~~d----t~A~v~~t~~~kfsYk--G~pn----ed~~~YtrVwKK~-d~~WKi~ 115 (131)
T 3hzp_A 65 TKVHKFELLGS----NAAICVFTLGSKFTYK--GTQN----DDLPTVTSIFKKI-DEKWKVA 115 (131)
T ss_dssp EEEEEEEESSS----SEEEEEEEEEEEEEET--TEEE----EEBCEEEEEEEEE-TTEEEEE
T ss_pred cceeeEEEcCC----ceEEEEEEecceEEEc--CccC----Ccceeeehhhhhc-CCcEEEE
Confidence 34555565422 4799989999987776 3332 1232222233444 4689996
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=21.01 E-value=2.1e+02 Score=22.81 Aligned_cols=55 Identities=13% Similarity=0.159 Sum_probs=38.9
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
++.+.|+++.++++-+..+.... ...+ ++..++.-.+..++++.|...+++++++
T Consensus 18 ~~~~~~~~~~A~~~~~~~~~~~~---~~~~-------~~~~la~~~~~~~~~~~A~~~~~~~~~~ 72 (125)
T 1na0_A 18 AYYKQGDYDEAIEYYQKALELDP---NNAE-------AWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT---TCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCc---CcHH-------HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 45678999999999999886321 1122 3445555556678888888888888765
No 132
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=20.85 E-value=2.5e+02 Score=29.62 Aligned_cols=55 Identities=16% Similarity=0.012 Sum_probs=39.9
Q ss_pred HHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 003442 173 LQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCLL 237 (819)
Q Consensus 173 LqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~LL 237 (819)
+...|+|+.+++..+.+|+... ...+ |+..+|.-.+..+++++|.+.+++|+++-
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p---~~~~-------a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDP---SNTK-------ALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCT---TCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhccCHHHHHHHHHHHHHhCc---hhHH-------HHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4578999999999999997421 1233 34444444556678999999999998874
No 133
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=20.71 E-value=44 Score=38.45 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=32.4
Q ss_pred CcchhccCCCCCCCh--HHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHH
Q 003442 87 VSCYQIIGVPNQAEK--DEIVKSVMDLKRAEIEEGYTMDAFMSRQDVLMDVR 136 (819)
Q Consensus 87 lD~YriLGv~~~a~~--d~I~rA~~~~~~~~p~~GyS~~al~aR~~LL~~A~ 136 (819)
-|||.|||++..... .+|.+||..+.+..|.. ..|-.|.+.|.
T Consensus 629 ~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-------~~r~~lvd~a~ 673 (681)
T 2pzi_A 629 ASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-------RHRYTLVDMAN 673 (681)
T ss_dssp CSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-------HHHHHHHHHHH
T ss_pred CCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-------HHHHHHHHHhc
Confidence 359999999776655 77999999888777665 35777777665
No 134
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=20.65 E-value=1.4e+02 Score=24.66 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhhhccccchhHHHHHHHHHHhhc--ccCCchhHHHHHHHHhhCChhHHHHH
Q 003442 355 FYIALIAHVALGFSSRQIELISKAKTICDCLIA--SESIDLKFEEAFCLFLLGQGTEAEAV 413 (819)
Q Consensus 355 ~YlaalAliA~GF~~rkP~lI~~A~~~l~~L~~--~~~~Dv~lE~avC~LLLGq~~eA~~~ 413 (819)
.|..+.++...| -..+|...|++... ....+.....|.|+.-+|+.++|...
T Consensus 10 ~~~lg~~~~~~g-------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 63 (100)
T 3ma5_A 10 RYALAQEHLKHD-------NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63 (100)
T ss_dssp HHHHHHHHHHTT-------CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444555555443 34667777776642 24567889999999999999999865
No 135
>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0
Probab=20.64 E-value=2.8e+02 Score=24.59 Aligned_cols=15 Identities=27% Similarity=0.862 Sum_probs=9.7
Q ss_pred EEEcCCCc--eeEeeccc
Q 003442 800 LRKKDDGT--WRFCKGDI 815 (819)
Q Consensus 800 L~r~~dG~--WKI~~~~v 815 (819)
.+|.+ |+ |||.....
T Consensus 114 w~k~~-g~~gWriv~~h~ 130 (134)
T 3fsd_A 114 WRRTQ-GPAGWKLVAGHC 130 (134)
T ss_dssp EEEET-TTTEEEEEEEEE
T ss_pred EEECC-CCccceEeEeEE
Confidence 34554 67 99986543
No 136
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=20.37 E-value=1.9e+02 Score=24.88 Aligned_cols=55 Identities=18% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
++.+.|+++.++++-+.+++..... .-++..+|.-.+..+++..|.+.+++++++
T Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 119 ALDNLGRFDEAIDSFKIALGLRPNE----------GKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHhcCccc----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
No 137
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.11 E-value=1.8e+02 Score=24.39 Aligned_cols=58 Identities=16% Similarity=0.043 Sum_probs=41.1
Q ss_pred HHHHcCchHHHHHHHHhhcCCCCCCCchhhHHHHHHHHhHHHHHHHHhhhchhhHHHHHHHHHHH
Q 003442 172 LLQEVGEEKLVLDIGRAALQHPNAKPYAHDFLLSMALAECAIAKVAFEKNNVSQGFEALARAQCL 236 (819)
Q Consensus 172 LLqE~GE~elVl~lg~~~L~~~~~~~~~~Dv~Ls~ALA~~elare~~e~~~~~~~~e~Le~al~L 236 (819)
.+.+.|+++.++++-+.+++.... ..+ .+.++..+|.-.+..+++..|.+.+++++++
T Consensus 37 ~~~~~~~~~~A~~~~~~a~~~~~~---~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 37 ELFKCGDYGGALAAYTQALGLDAT---PQD----QAVLHRNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp HHHTTTCHHHHHHHHHHHHTSCCC---HHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHccc---chH----HHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 456889999999999999974321 111 2344555555566778898888899888876
Done!