Query 003444
Match_columns 819
No_of_seqs 282 out of 1346
Neff 4.2
Searched_HMMs 29240
Date Tue Mar 26 01:24:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cip_A Protein (guanine nucleo 100.0 8.3E-58 2.9E-62 492.4 18.5 255 508-819 8-264 (353)
2 3ohm_A Guanine nucleotide-bind 100.0 1.3E-57 4.6E-62 487.4 19.2 237 526-819 2-238 (327)
3 1azs_C GS-alpha; complex (lyas 100.0 4.6E-57 1.6E-61 495.1 20.7 271 493-819 1-288 (402)
4 1zcb_A G alpha I/13; GTP-bindi 100.0 8.6E-56 2.9E-60 478.2 16.8 264 493-819 1-272 (362)
5 4fid_A G protein alpha subunit 100.0 4.1E-55 1.4E-59 470.7 17.6 230 529-819 3-232 (340)
6 2xtz_A Guanine nucleotide-bind 100.0 8E-52 2.7E-56 446.3 20.9 248 529-819 7-254 (354)
7 1c1y_A RAS-related protein RAP 97.2 0.00061 2.1E-08 61.9 7.6 37 745-782 51-87 (167)
8 3l82_B F-box only protein 4; T 96.5 0.0006 2.1E-08 70.3 1.0 30 751-781 108-137 (227)
9 1upt_A ARL1, ADP-ribosylation 96.5 0.0098 3.4E-07 54.2 8.9 60 745-817 51-110 (171)
10 2x77_A ADP-ribosylation factor 96.3 0.012 4E-07 55.3 8.6 60 745-817 66-125 (189)
11 1r8s_A ADP-ribosylation factor 96.1 0.0094 3.2E-07 54.1 6.9 60 745-817 44-103 (164)
12 2h17_A ADP-ribosylation factor 96.1 0.014 4.7E-07 54.7 7.9 54 745-811 65-118 (181)
13 2h57_A ADP-ribosylation factor 96.1 0.016 5.5E-07 54.5 8.4 56 745-813 67-122 (190)
14 3lvq_E ARF-GAP with SH3 domain 96.0 0.014 4.9E-07 64.4 9.1 61 745-818 366-426 (497)
15 1ksh_A ARF-like protein 2; sma 96.0 0.015 5.2E-07 54.3 7.8 60 745-817 62-121 (186)
16 4bas_A ADP-ribosylation factor 95.9 0.019 6.3E-07 54.0 8.1 53 745-810 63-115 (199)
17 1fzq_A ADP-ribosylation factor 95.9 0.013 4.5E-07 55.3 6.7 60 745-817 60-119 (181)
18 1f6b_A SAR1; gtpases, N-termin 95.9 0.019 6.3E-07 55.3 7.9 60 745-817 69-128 (198)
19 1m2o_B GTP-binding protein SAR 95.8 0.027 9.1E-07 53.7 8.9 60 745-817 67-126 (190)
20 3l2o_B F-box only protein 4; s 95.8 0.0012 4.2E-08 70.7 -0.8 32 751-783 193-224 (312)
21 1zj6_A ADP-ribosylation factor 95.8 0.014 4.8E-07 54.8 6.4 54 745-811 60-113 (187)
22 1moz_A ARL1, ADP-ribosylation 95.7 0.022 7.6E-07 52.7 7.5 54 745-811 62-115 (183)
23 1zd9_A ADP-ribosylation factor 95.4 0.027 9.2E-07 53.2 6.8 60 745-817 67-126 (188)
24 2b6h_A ADP-ribosylation factor 95.1 0.028 9.6E-07 53.6 6.2 60 745-817 73-132 (192)
25 3t1o_A Gliding protein MGLA; G 95.1 0.018 6.1E-07 53.6 4.6 36 745-781 74-109 (198)
26 1z2a_A RAS-related protein RAB 93.8 0.029 1E-06 50.7 2.8 24 529-552 3-26 (168)
27 2ce2_X GTPase HRAS; signaling 93.5 0.038 1.3E-06 49.4 2.9 22 531-552 3-24 (166)
28 1ky3_A GTP-binding protein YPT 93.4 0.037 1.3E-06 50.8 2.8 25 528-552 5-29 (182)
29 1z08_A RAS-related protein RAB 93.2 0.039 1.3E-06 50.1 2.7 24 529-552 4-27 (170)
30 1z0j_A RAB-22, RAS-related pro 93.1 0.039 1.3E-06 50.0 2.4 23 529-551 4-26 (170)
31 1oix_A RAS-related protein RAB 93.1 0.039 1.3E-06 52.7 2.5 23 530-552 28-50 (191)
32 3bc1_A RAS-related protein RAB 93.1 0.071 2.4E-06 49.2 4.2 37 745-782 70-106 (195)
33 3c5c_A RAS-like protein 12; GD 93.1 0.044 1.5E-06 51.9 2.8 29 524-552 14-42 (187)
34 3t5g_A GTP-binding protein RHE 93.0 0.21 7.2E-06 46.1 7.3 36 745-781 54-89 (181)
35 3o47_A ADP-ribosylation factor 93.0 0.11 3.7E-06 55.0 5.9 60 745-817 209-268 (329)
36 1z0f_A RAB14, member RAS oncog 93.0 0.041 1.4E-06 50.3 2.4 24 529-552 13-36 (179)
37 1u8z_A RAS-related protein RAL 92.9 0.049 1.7E-06 49.0 2.8 23 530-552 3-25 (168)
38 3q72_A GTP-binding protein RAD 92.9 0.046 1.6E-06 49.6 2.7 21 531-551 2-22 (166)
39 2erx_A GTP-binding protein DI- 92.9 0.049 1.7E-06 49.3 2.8 23 530-552 2-24 (172)
40 1r2q_A RAS-related protein RAB 92.8 0.049 1.7E-06 49.2 2.7 23 529-551 4-26 (170)
41 2efe_B Small GTP-binding prote 92.8 0.049 1.7E-06 50.2 2.7 25 528-552 9-33 (181)
42 1ek0_A Protein (GTP-binding pr 92.8 0.049 1.7E-06 49.2 2.7 22 530-551 2-23 (170)
43 1upt_A ARL1, ADP-ribosylation 92.8 0.049 1.7E-06 49.5 2.6 24 528-551 4-27 (171)
44 2zej_A Dardarin, leucine-rich 92.7 0.045 1.5E-06 51.6 2.4 22 531-552 2-23 (184)
45 2hxs_A RAB-26, RAS-related pro 92.7 0.047 1.6E-06 50.1 2.5 24 529-552 4-27 (178)
46 2wjg_A FEOB, ferrous iron tran 92.7 0.053 1.8E-06 50.5 2.8 23 530-552 6-28 (188)
47 2o52_A RAS-related protein RAB 92.7 0.052 1.8E-06 52.0 2.8 26 526-551 20-45 (200)
48 1kao_A RAP2A; GTP-binding prot 92.7 0.055 1.9E-06 48.5 2.8 23 530-552 2-24 (167)
49 2f9l_A RAB11B, member RAS onco 92.7 0.051 1.8E-06 51.8 2.7 23 530-552 4-26 (199)
50 2bme_A RAB4A, RAS-related prot 92.6 0.05 1.7E-06 50.4 2.5 23 529-551 8-30 (186)
51 3q85_A GTP-binding protein REM 92.6 0.058 2E-06 49.1 2.8 21 531-551 2-22 (169)
52 2nzj_A GTP-binding protein REM 92.5 0.06 2E-06 49.1 2.8 23 530-552 3-25 (175)
53 3tw8_B RAS-related protein RAB 92.5 0.057 1.9E-06 49.4 2.6 24 528-551 6-29 (181)
54 1m7b_A RND3/RHOE small GTP-bin 92.4 0.064 2.2E-06 50.3 2.9 25 528-552 4-28 (184)
55 1wms_A RAB-9, RAB9, RAS-relate 92.3 0.055 1.9E-06 49.6 2.4 23 529-551 5-27 (177)
56 1g16_A RAS-related protein SEC 92.3 0.067 2.3E-06 48.4 2.9 23 530-552 2-24 (170)
57 2fn4_A P23, RAS-related protei 92.3 0.067 2.3E-06 48.9 2.9 23 530-552 8-30 (181)
58 4dsu_A GTPase KRAS, isoform 2B 92.3 0.063 2.2E-06 49.6 2.7 24 529-552 2-25 (189)
59 3clv_A RAB5 protein, putative; 92.3 0.055 1.9E-06 50.1 2.3 37 745-782 93-129 (208)
60 3con_A GTPase NRAS; structural 92.3 0.062 2.1E-06 50.2 2.7 24 529-552 19-42 (190)
61 1zp6_A Hypothetical protein AT 92.3 0.056 1.9E-06 51.1 2.4 21 532-552 10-30 (191)
62 1zd9_A ADP-ribosylation factor 92.2 0.065 2.2E-06 50.5 2.7 26 527-552 18-43 (188)
63 2wji_A Ferrous iron transport 92.2 0.068 2.3E-06 49.4 2.8 22 531-552 3-24 (165)
64 2a9k_A RAS-related protein RAL 92.2 0.069 2.4E-06 49.1 2.8 25 528-552 15-39 (187)
65 2bov_A RAla, RAS-related prote 92.2 0.066 2.3E-06 50.5 2.7 26 527-552 10-35 (206)
66 1vg8_A RAS-related protein RAB 92.1 0.068 2.3E-06 50.5 2.8 24 528-551 5-28 (207)
67 2ged_A SR-beta, signal recogni 92.1 0.047 1.6E-06 51.2 1.6 24 528-551 45-68 (193)
68 2fh5_B SR-beta, signal recogni 92.1 0.061 2.1E-06 51.5 2.4 25 528-552 4-28 (214)
69 2y8e_A RAB-protein 6, GH09086P 92.1 0.073 2.5E-06 48.6 2.8 24 529-552 12-35 (179)
70 1moz_A ARL1, ADP-ribosylation 92.0 0.058 2E-06 49.9 2.2 23 529-551 16-38 (183)
71 2gf0_A GTP-binding protein DI- 92.0 0.07 2.4E-06 50.0 2.7 25 528-552 5-29 (199)
72 3bwd_D RAC-like GTP-binding pr 92.0 0.067 2.3E-06 49.2 2.5 25 528-552 5-29 (182)
73 3bc1_A RAS-related protein RAB 92.0 0.072 2.5E-06 49.2 2.7 24 529-552 9-32 (195)
74 3ihw_A Centg3; RAS, centaurin, 92.0 0.072 2.5E-06 50.5 2.8 25 527-551 16-40 (184)
75 2fg5_A RAB-22B, RAS-related pr 91.9 0.076 2.6E-06 50.2 2.9 27 526-552 18-44 (192)
76 3kkq_A RAS-related protein M-R 91.9 0.076 2.6E-06 49.2 2.8 24 529-552 16-39 (183)
77 2hf9_A Probable hydrogenase ni 91.9 0.058 2E-06 52.2 2.1 26 527-552 34-59 (226)
78 4gp7_A Metallophosphoesterase; 91.9 0.059 2E-06 51.3 2.1 18 533-550 11-28 (171)
79 2j0v_A RAC-like GTP-binding pr 91.9 0.23 7.7E-06 47.5 6.1 38 745-783 57-94 (212)
80 1z06_A RAS-related protein RAB 91.9 0.077 2.6E-06 49.8 2.8 24 528-551 17-40 (189)
81 2lkc_A Translation initiation 91.9 0.068 2.3E-06 49.0 2.4 24 529-552 6-29 (178)
82 3reg_A RHO-like small GTPase; 91.8 0.075 2.6E-06 50.1 2.7 26 526-551 18-43 (194)
83 2q3h_A RAS homolog gene family 91.8 0.22 7.7E-06 47.0 6.0 37 745-782 68-104 (201)
84 2dyk_A GTP-binding protein; GT 91.8 0.072 2.5E-06 47.9 2.4 21 532-552 2-22 (161)
85 2g6b_A RAS-related protein RAB 91.8 0.078 2.7E-06 48.7 2.7 23 529-551 8-30 (180)
86 2iwr_A Centaurin gamma 1; ANK 91.8 0.064 2.2E-06 49.5 2.1 23 530-552 6-28 (178)
87 3oes_A GTPase rhebl1; small GT 91.8 0.082 2.8E-06 50.4 2.9 26 527-552 20-45 (201)
88 1mh1_A RAC1; GTP-binding, GTPa 91.8 0.079 2.7E-06 48.8 2.7 22 530-551 4-25 (186)
89 1ky3_A GTP-binding protein YPT 91.7 0.29 1E-05 44.7 6.5 37 745-782 58-94 (182)
90 3t1o_A Gliding protein MGLA; G 91.7 0.083 2.8E-06 49.0 2.8 23 527-549 10-32 (198)
91 1zj6_A ADP-ribosylation factor 91.7 0.083 2.8E-06 49.5 2.8 26 527-552 12-37 (187)
92 3t5g_A GTP-binding protein RHE 91.7 0.082 2.8E-06 48.9 2.8 24 529-552 4-27 (181)
93 3oes_A GTPase rhebl1; small GT 91.7 0.26 8.9E-06 46.9 6.3 36 745-781 72-107 (201)
94 1fzq_A ADP-ribosylation factor 91.7 0.083 2.8E-06 49.7 2.8 23 529-551 14-36 (181)
95 2ehv_A Hypothetical protein PH 91.6 0.069 2.3E-06 52.2 2.3 21 532-552 31-51 (251)
96 3dz8_A RAS-related protein RAB 91.5 0.085 2.9E-06 49.7 2.7 26 527-552 19-44 (191)
97 1ksh_A ARF-like protein 2; sma 91.5 0.086 2.9E-06 49.1 2.7 23 529-551 16-38 (186)
98 1m2o_B GTP-binding protein SAR 91.4 0.085 2.9E-06 50.2 2.6 24 529-552 21-44 (190)
99 2atx_A Small GTP binding prote 91.4 0.3 1E-05 45.8 6.3 37 745-782 66-102 (194)
100 2h17_A ADP-ribosylation factor 91.4 0.088 3E-06 49.2 2.6 26 527-552 17-42 (181)
101 2b6h_A ADP-ribosylation factor 91.3 0.095 3.3E-06 49.9 2.9 25 527-551 25-49 (192)
102 2oil_A CATX-8, RAS-related pro 91.3 0.08 2.7E-06 49.7 2.3 26 527-552 21-46 (193)
103 3llu_A RAS-related GTP-binding 91.3 0.087 3E-06 50.1 2.6 25 526-550 15-39 (196)
104 1ye8_A Protein THEP1, hypothet 91.3 0.083 2.8E-06 51.3 2.5 20 533-552 2-21 (178)
105 1nrj_B SR-beta, signal recogni 91.3 0.088 3E-06 50.6 2.5 26 527-552 8-33 (218)
106 3tkl_A RAS-related protein RAB 91.3 0.095 3.2E-06 49.0 2.7 24 529-552 14-37 (196)
107 2a5j_A RAS-related protein RAB 91.3 0.092 3.1E-06 49.5 2.6 24 529-552 19-42 (191)
108 1svi_A GTP-binding protein YSX 91.3 0.094 3.2E-06 49.1 2.7 23 529-551 21-43 (195)
109 1gwn_A RHO-related GTP-binding 91.3 0.099 3.4E-06 50.7 2.9 25 528-552 25-49 (205)
110 2cxx_A Probable GTP-binding pr 91.2 0.093 3.2E-06 48.7 2.6 21 532-552 2-22 (190)
111 1x3s_A RAS-related protein RAB 91.2 0.097 3.3E-06 48.7 2.7 23 529-551 13-35 (195)
112 3cbq_A GTP-binding protein REM 91.2 0.082 2.8E-06 50.7 2.3 25 527-551 19-43 (195)
113 2bcg_Y Protein YP2, GTP-bindin 91.2 0.09 3.1E-06 50.0 2.5 23 529-551 6-28 (206)
114 1r8s_A ADP-ribosylation factor 91.1 0.093 3.2E-06 47.5 2.4 21 532-552 1-21 (164)
115 2atv_A RERG, RAS-like estrogen 91.1 0.097 3.3E-06 49.5 2.7 25 528-552 25-49 (196)
116 1x3s_A RAS-related protein RAB 91.1 0.17 5.8E-06 47.0 4.3 37 745-782 64-100 (195)
117 3tr0_A Guanylate kinase, GMP k 91.1 0.086 2.9E-06 50.3 2.3 23 533-555 9-31 (205)
118 2gf9_A RAS-related protein RAB 91.0 0.097 3.3E-06 49.1 2.5 23 529-551 20-42 (189)
119 1mh1_A RAC1; GTP-binding, GTPa 91.0 0.34 1.2E-05 44.5 6.2 36 745-781 53-88 (186)
120 2f7s_A C25KG, RAS-related prot 91.0 0.089 3E-06 50.5 2.3 26 527-552 21-46 (217)
121 2hup_A RAS-related protein RAB 91.0 0.1 3.6E-06 50.0 2.8 25 527-551 25-49 (201)
122 2q3h_A RAS homolog gene family 91.0 0.099 3.4E-06 49.4 2.6 26 527-552 16-41 (201)
123 3tw8_B RAS-related protein RAB 91.0 0.39 1.3E-05 43.8 6.5 37 745-782 58-94 (181)
124 2h57_A ADP-ribosylation factor 90.9 0.091 3.1E-06 49.4 2.2 24 528-551 18-41 (190)
125 2gj8_A MNME, tRNA modification 90.9 0.11 3.7E-06 48.7 2.7 23 530-552 3-25 (172)
126 2p5s_A RAS and EF-hand domain 90.9 0.1 3.5E-06 49.6 2.6 25 527-551 24-48 (199)
127 3reg_A RHO-like small GTPase; 90.8 0.39 1.3E-05 45.2 6.5 37 745-782 71-107 (194)
128 4a74_A DNA repair and recombin 90.8 0.098 3.3E-06 50.4 2.4 22 532-553 26-47 (231)
129 3pqc_A Probable GTP-binding pr 90.8 0.11 3.6E-06 48.3 2.6 23 529-551 21-43 (195)
130 1f6b_A SAR1; gtpases, N-termin 90.8 0.11 3.8E-06 49.8 2.7 23 529-551 23-45 (198)
131 2il1_A RAB12; G-protein, GDP, 90.8 0.11 3.7E-06 49.3 2.6 23 529-551 24-46 (192)
132 1lvg_A Guanylate kinase, GMP k 90.8 0.095 3.3E-06 51.1 2.3 24 532-555 5-28 (198)
133 4gzl_A RAS-related C3 botulinu 90.7 0.11 3.8E-06 49.9 2.7 37 745-782 78-114 (204)
134 1kag_A SKI, shikimate kinase I 90.7 0.1 3.4E-06 48.6 2.3 25 532-556 5-29 (173)
135 2j1l_A RHO-related GTP-binding 90.6 0.12 4.3E-06 49.9 3.0 26 527-552 30-55 (214)
136 1kgd_A CASK, peripheral plasma 90.6 0.1 3.5E-06 49.8 2.3 24 533-556 7-30 (180)
137 2f7s_A C25KG, RAS-related prot 90.5 0.08 2.7E-06 50.8 1.5 36 745-781 84-119 (217)
138 2bdt_A BH3686; alpha-beta prot 90.5 0.11 3.6E-06 49.4 2.3 20 533-552 4-23 (189)
139 2x77_A ADP-ribosylation factor 90.5 0.1 3.6E-06 48.8 2.2 23 529-551 20-42 (189)
140 2fu5_C RAS-related protein RAB 90.4 0.083 2.8E-06 48.9 1.4 24 529-552 6-29 (183)
141 3llu_A RAS-related GTP-binding 90.3 0.15 5.1E-06 48.5 3.1 37 745-781 69-107 (196)
142 3q3j_B RHO-related GTP-binding 90.3 0.12 4.2E-06 50.2 2.6 26 526-551 22-47 (214)
143 2ew1_A RAS-related protein RAB 90.3 0.12 4.1E-06 50.1 2.5 25 528-552 23-47 (201)
144 3lxx_A GTPase IMAP family memb 90.2 0.13 4.5E-06 50.9 2.8 26 526-551 24-49 (239)
145 3a00_A Guanylate kinase, GMP k 90.2 0.11 3.9E-06 49.7 2.3 23 534-556 4-26 (186)
146 1zbd_A Rabphilin-3A; G protein 90.2 0.13 4.6E-06 48.6 2.7 22 530-551 7-28 (203)
147 4bas_A ADP-ribosylation factor 90.2 0.14 4.8E-06 47.9 2.8 25 527-551 13-37 (199)
148 1vg8_A RAS-related protein RAB 90.1 0.35 1.2E-05 45.6 5.6 37 745-782 57-93 (207)
149 2atx_A Small GTP binding prote 90.1 0.15 5E-06 48.0 2.9 24 529-552 16-39 (194)
150 2hxs_A RAB-26, RAS-related pro 90.1 0.18 6.1E-06 46.2 3.4 38 745-783 56-93 (178)
151 3c8u_A Fructokinase; YP_612366 90.0 0.17 5.9E-06 49.3 3.4 28 529-556 20-47 (208)
152 2fn4_A P23, RAS-related protei 89.9 0.17 6E-06 46.1 3.2 37 745-782 57-93 (181)
153 3lw7_A Adenylate kinase relate 89.9 0.13 4.4E-06 46.8 2.3 19 533-551 3-21 (179)
154 3q72_A GTP-binding protein RAD 89.8 0.32 1.1E-05 44.0 4.7 36 745-781 49-84 (166)
155 2cjw_A GTP-binding protein GEM 89.7 0.16 5.4E-06 48.6 2.8 23 530-552 5-27 (192)
156 2j0v_A RAC-like GTP-binding pr 89.7 0.17 5.7E-06 48.4 3.0 24 529-552 7-30 (212)
157 2j41_A Guanylate kinase; GMP, 89.6 0.13 4.6E-06 48.9 2.3 24 532-555 7-30 (207)
158 4dsu_A GTPase KRAS, isoform 2B 89.6 0.34 1.1E-05 44.7 4.9 36 745-781 52-87 (189)
159 1ly1_A Polynucleotide kinase; 89.6 0.15 5.1E-06 47.3 2.5 21 533-553 4-24 (181)
160 2yc2_C IFT27, small RAB-relate 89.6 0.2 6.7E-06 47.1 3.3 36 745-781 73-108 (208)
161 1z08_A RAS-related protein RAB 89.6 0.55 1.9E-05 42.5 6.2 37 745-782 55-91 (170)
162 2fu5_C RAS-related protein RAB 89.5 0.25 8.6E-06 45.7 3.9 37 745-782 57-93 (183)
163 2gco_A H9, RHO-related GTP-bin 89.5 0.17 5.8E-06 48.3 2.8 23 530-552 24-46 (201)
164 2fv8_A H6, RHO-related GTP-bin 89.5 0.18 6.1E-06 48.4 3.0 23 530-552 24-46 (207)
165 3cph_A RAS-related protein SEC 89.5 0.16 5.4E-06 48.2 2.6 26 527-552 16-41 (213)
166 4eun_A Thermoresistant glucoki 89.4 0.14 4.9E-06 49.4 2.3 26 531-556 29-54 (200)
167 2g6b_A RAS-related protein RAB 89.4 0.25 8.4E-06 45.4 3.7 37 745-782 60-96 (180)
168 3asz_A Uridine kinase; cytidin 89.3 0.21 7.2E-06 48.1 3.4 26 531-556 6-31 (211)
169 3kb2_A SPBC2 prophage-derived 89.3 0.16 5.4E-06 46.8 2.3 23 533-555 3-25 (173)
170 2a9k_A RAS-related protein RAL 89.2 0.17 5.8E-06 46.5 2.6 37 745-782 66-102 (187)
171 1znw_A Guanylate kinase, GMP k 89.2 0.15 5.1E-06 49.7 2.3 23 533-555 22-44 (207)
172 1wms_A RAB-9, RAB9, RAS-relate 89.2 0.38 1.3E-05 44.0 4.8 37 745-782 56-92 (177)
173 2yc2_C IFT27, small RAB-relate 89.1 0.11 3.7E-06 48.9 1.1 24 529-552 18-41 (208)
174 3th5_A RAS-related C3 botulinu 88.7 0.075 2.6E-06 50.6 0.0 27 526-552 25-51 (204)
175 1knq_A Gluconate kinase; ALFA/ 89.1 0.16 5.5E-06 47.5 2.3 25 532-556 9-33 (175)
176 2g3y_A GTP-binding protein GEM 89.0 0.19 6.4E-06 49.9 2.8 24 528-551 34-57 (211)
177 1z06_A RAS-related protein RAB 89.0 0.38 1.3E-05 45.0 4.8 37 745-782 69-106 (189)
178 1u8z_A RAS-related protein RAL 88.9 0.17 5.9E-06 45.3 2.3 37 745-782 52-88 (168)
179 2bbw_A Adenylate kinase 4, AK4 88.8 0.17 5.9E-06 50.5 2.4 22 531-552 27-48 (246)
180 2bcg_Y Protein YP2, GTP-bindin 88.8 0.59 2E-05 44.4 6.1 37 745-782 57-93 (206)
181 1qhx_A CPT, protein (chloramph 88.8 0.17 5.9E-06 47.2 2.3 24 533-556 5-28 (178)
182 4dkx_A RAS-related protein RAB 88.8 0.18 6.2E-06 50.3 2.6 29 530-562 12-40 (216)
183 3fb4_A Adenylate kinase; psych 88.7 0.18 6.2E-06 48.7 2.4 25 532-556 1-25 (216)
184 1kao_A RAP2A; GTP-binding prot 88.7 0.22 7.5E-06 44.6 2.8 36 745-781 51-86 (167)
185 3gj0_A GTP-binding nuclear pro 88.6 0.12 4.1E-06 50.0 1.1 23 528-550 12-34 (221)
186 1pui_A ENGB, probable GTP-bind 88.6 0.12 4.3E-06 49.1 1.2 25 527-551 22-46 (210)
187 1z6g_A Guanylate kinase; struc 88.6 0.17 6E-06 50.1 2.3 26 530-555 22-47 (218)
188 3cm0_A Adenylate kinase; ATP-b 88.5 0.23 7.9E-06 46.6 3.0 23 531-553 4-26 (186)
189 3tkl_A RAS-related protein RAB 88.4 0.45 1.5E-05 44.3 4.8 37 745-782 65-101 (196)
190 3uie_A Adenylyl-sulfate kinase 88.4 0.19 6.4E-06 48.6 2.3 26 530-555 24-50 (200)
191 1r2q_A RAS-related protein RAB 88.3 0.32 1.1E-05 43.8 3.6 37 745-782 55-91 (170)
192 4djt_A GTP-binding nuclear pro 88.3 0.11 3.6E-06 50.0 0.4 24 528-551 8-31 (218)
193 3dl0_A Adenylate kinase; phosp 88.3 0.2 6.9E-06 48.5 2.4 25 532-556 1-25 (216)
194 2qu8_A Putative nucleolar GTP- 88.2 0.21 7.3E-06 48.8 2.6 22 530-551 28-49 (228)
195 1cke_A CK, MSSA, protein (cyti 88.1 0.25 8.5E-06 47.9 3.0 25 532-556 6-30 (227)
196 2w0m_A SSO2452; RECA, SSPF, un 88.1 0.2 6.9E-06 48.0 2.3 20 533-552 25-44 (235)
197 2if2_A Dephospho-COA kinase; a 88.1 0.24 8.1E-06 47.5 2.8 21 533-553 3-23 (204)
198 2atv_A RERG, RAS-like estrogen 88.1 0.2 6.8E-06 47.4 2.2 36 745-782 76-111 (196)
199 1nks_A Adenylate kinase; therm 88.0 0.24 8.2E-06 46.2 2.7 23 533-555 3-25 (194)
200 2gf9_A RAS-related protein RAB 88.0 0.48 1.6E-05 44.4 4.8 37 745-782 71-107 (189)
201 3t61_A Gluconokinase; PSI-biol 88.0 0.2 7E-06 48.1 2.3 25 532-556 19-43 (202)
202 1htw_A HI0065; nucleotide-bind 87.9 0.21 7.2E-06 47.9 2.3 23 530-552 32-54 (158)
203 2qor_A Guanylate kinase; phosp 87.9 0.22 7.5E-06 48.3 2.4 26 530-555 11-36 (204)
204 2qnr_A Septin-2, protein NEDD5 87.9 0.22 7.5E-06 52.2 2.6 22 530-551 17-38 (301)
205 3ec2_A DNA replication protein 87.9 0.2 6.9E-06 47.2 2.1 22 531-552 38-59 (180)
206 1ek0_A Protein (GTP-binding pr 87.8 0.36 1.2E-05 43.4 3.7 37 745-782 52-88 (170)
207 3cpj_B GTP-binding protein YPT 87.8 0.24 8.3E-06 48.1 2.7 23 529-551 11-33 (223)
208 2a5j_A RAS-related protein RAB 87.8 0.52 1.8E-05 44.3 4.9 37 745-782 70-106 (191)
209 3tif_A Uncharacterized ABC tra 87.7 0.21 7.2E-06 50.5 2.3 26 532-557 32-57 (235)
210 1s96_A Guanylate kinase, GMP k 87.7 0.21 7.2E-06 50.1 2.3 26 531-556 16-41 (219)
211 3vaa_A Shikimate kinase, SK; s 87.7 0.23 7.8E-06 47.9 2.4 26 531-556 25-50 (199)
212 2jaq_A Deoxyguanosine kinase; 87.7 0.25 8.5E-06 46.7 2.6 23 533-555 2-24 (205)
213 3sop_A Neuronal-specific septi 87.7 0.26 8.8E-06 51.1 2.9 26 531-556 2-27 (270)
214 1via_A Shikimate kinase; struc 87.6 0.22 7.6E-06 46.7 2.3 24 533-556 6-29 (175)
215 2bme_A RAB4A, RAS-related prot 87.6 0.38 1.3E-05 44.5 3.8 37 745-782 59-95 (186)
216 2pcj_A ABC transporter, lipopr 87.6 0.23 7.7E-06 49.9 2.4 24 533-556 32-55 (224)
217 2efe_B Small GTP-binding prote 87.5 0.36 1.2E-05 44.3 3.5 36 745-781 61-96 (181)
218 3k53_A Ferrous iron transport 87.5 0.26 9E-06 50.0 2.8 22 531-552 3-24 (271)
219 3t5d_A Septin-7; GTP-binding p 87.5 0.27 9.3E-06 50.1 2.9 24 528-551 5-28 (274)
220 3q3j_B RHO-related GTP-binding 87.4 0.53 1.8E-05 45.7 4.9 36 745-781 75-110 (214)
221 3tau_A Guanylate kinase, GMP k 87.2 0.24 8.2E-06 48.4 2.3 24 533-556 10-33 (208)
222 3b85_A Phosphate starvation-in 87.1 0.26 8.9E-06 49.2 2.5 23 532-554 23-45 (208)
223 2bov_A RAla, RAS-related prote 87.1 0.3 1E-05 45.9 2.8 37 745-782 62-98 (206)
224 1aky_A Adenylate kinase; ATP:A 87.0 0.27 9.2E-06 48.0 2.5 27 530-556 3-29 (220)
225 2wsm_A Hydrogenase expression/ 87.0 0.23 7.7E-06 47.9 1.9 25 527-551 26-50 (221)
226 1kht_A Adenylate kinase; phosp 87.0 0.29 9.8E-06 45.8 2.6 23 532-554 4-26 (192)
227 3cpj_B GTP-binding protein YPT 87.0 0.72 2.4E-05 44.7 5.5 37 745-782 62-98 (223)
228 2pt5_A Shikimate kinase, SK; a 87.0 0.29 9.8E-06 45.2 2.6 24 533-556 2-25 (168)
229 3lnc_A Guanylate kinase, GMP k 86.9 0.23 7.7E-06 49.0 1.9 23 533-555 29-52 (231)
230 3cph_A RAS-related protein SEC 86.9 0.62 2.1E-05 44.1 4.9 37 745-782 69-105 (213)
231 3a1s_A Iron(II) transport prot 86.9 0.28 9.7E-06 50.0 2.7 24 529-552 3-26 (258)
232 3bwd_D RAC-like GTP-binding pr 86.9 0.42 1.4E-05 43.9 3.6 37 745-782 56-92 (182)
233 2ff7_A Alpha-hemolysin translo 86.8 0.27 9.1E-06 50.2 2.4 26 531-556 35-60 (247)
234 1e4v_A Adenylate kinase; trans 86.8 0.3 1E-05 47.5 2.8 24 533-556 2-25 (214)
235 3con_A GTPase NRAS; structural 86.8 0.64 2.2E-05 43.3 4.9 37 745-782 69-105 (190)
236 2cbz_A Multidrug resistance-as 86.7 0.27 9.3E-06 49.8 2.4 25 531-555 31-55 (237)
237 1g16_A RAS-related protein SEC 86.7 0.56 1.9E-05 42.3 4.3 37 745-782 52-88 (170)
238 4dhe_A Probable GTP-binding pr 86.6 0.16 5.5E-06 48.8 0.7 23 529-551 27-49 (223)
239 1mv5_A LMRA, multidrug resista 86.6 0.28 9.5E-06 49.7 2.4 26 531-556 28-53 (243)
240 3kkq_A RAS-related protein M-R 86.6 0.31 1.1E-05 45.1 2.6 37 745-782 66-102 (183)
241 3lxw_A GTPase IMAP family memb 86.6 0.31 1.1E-05 49.2 2.8 24 528-551 18-41 (247)
242 2eyu_A Twitching motility prot 86.6 0.27 9.2E-06 50.7 2.3 27 530-556 24-50 (261)
243 2fh5_B SR-beta, signal recogni 86.5 0.57 2E-05 44.7 4.5 37 745-782 54-91 (214)
244 1lw7_A Transcriptional regulat 86.5 0.28 9.6E-06 52.2 2.5 27 531-557 170-196 (365)
245 3trf_A Shikimate kinase, SK; a 86.5 0.3 1E-05 45.9 2.4 23 532-554 6-28 (185)
246 2rhm_A Putative kinase; P-loop 86.5 0.36 1.2E-05 45.4 3.0 26 531-556 5-30 (193)
247 1ji0_A ABC transporter; ATP bi 86.5 0.27 9.3E-06 49.8 2.3 25 532-556 33-57 (240)
248 2cvh_A DNA repair and recombin 86.5 0.28 9.7E-06 47.0 2.3 21 533-553 22-42 (220)
249 1jjv_A Dephospho-COA kinase; P 86.4 0.33 1.1E-05 46.7 2.7 21 533-553 4-24 (206)
250 2onk_A Molybdate/tungstate ABC 86.4 0.27 9.4E-06 50.1 2.3 25 532-556 25-49 (240)
251 2wkq_A NPH1-1, RAS-related C3 86.4 1.1 3.6E-05 45.6 6.6 36 745-781 203-238 (332)
252 1sgw_A Putative ABC transporte 86.4 0.28 9.5E-06 49.3 2.3 24 532-555 36-59 (214)
253 2d2e_A SUFC protein; ABC-ATPas 86.3 0.28 9.6E-06 50.0 2.3 23 532-554 30-52 (250)
254 1m7b_A RND3/RHOE small GTP-bin 86.3 0.71 2.4E-05 43.1 4.9 37 745-782 55-91 (184)
255 2bwj_A Adenylate kinase 5; pho 86.3 0.36 1.2E-05 45.6 2.9 27 530-556 11-37 (199)
256 1g6h_A High-affinity branched- 86.3 0.28 9.6E-06 50.2 2.3 25 532-556 34-58 (257)
257 1tev_A UMP-CMP kinase; ploop, 86.3 0.32 1.1E-05 45.5 2.5 24 532-555 4-27 (196)
258 2plr_A DTMP kinase, probable t 86.2 0.35 1.2E-05 46.0 2.8 25 532-556 5-29 (213)
259 3gfo_A Cobalt import ATP-bindi 86.2 0.28 9.7E-06 51.1 2.3 26 531-556 34-59 (275)
260 2xtp_A GTPase IMAP family memb 86.2 0.34 1.2E-05 48.4 2.8 24 528-551 19-42 (260)
261 3l0i_B RAS-related protein RAB 86.1 0.14 4.8E-06 48.7 -0.1 23 529-551 31-53 (199)
262 2pze_A Cystic fibrosis transme 86.1 0.31 1.1E-05 49.0 2.4 25 531-555 34-58 (229)
263 2lkc_A Translation initiation 86.0 0.61 2.1E-05 42.6 4.2 36 745-781 55-90 (178)
264 2oil_A CATX-8, RAS-related pro 86.0 0.5 1.7E-05 44.3 3.7 37 745-782 74-110 (193)
265 1b0u_A Histidine permease; ABC 86.0 0.3 1E-05 50.3 2.3 24 533-556 34-57 (262)
266 3kta_A Chromosome segregation 85.9 0.39 1.3E-05 45.1 2.9 24 533-556 28-51 (182)
267 3tlx_A Adenylate kinase 2; str 85.7 0.42 1.4E-05 48.1 3.2 28 529-556 27-54 (243)
268 3def_A T7I23.11 protein; chlor 85.7 0.42 1.4E-05 48.3 3.2 24 529-552 34-57 (262)
269 1zbd_A Rabphilin-3A; G protein 85.7 0.47 1.6E-05 44.8 3.4 37 745-782 57-93 (203)
270 2qi9_C Vitamin B12 import ATP- 85.7 0.31 1.1E-05 50.0 2.3 24 532-555 27-50 (249)
271 2iyv_A Shikimate kinase, SK; t 85.6 0.35 1.2E-05 45.6 2.4 24 533-556 4-27 (184)
272 1vpl_A ABC transporter, ATP-bi 85.6 0.32 1.1E-05 50.1 2.3 25 532-556 42-66 (256)
273 2ghi_A Transport protein; mult 85.6 0.33 1.1E-05 49.9 2.4 25 531-555 46-70 (260)
274 3b1v_A Ferrous iron uptake tra 85.6 0.35 1.2E-05 50.0 2.6 23 530-552 2-24 (272)
275 3iij_A Coilin-interacting nucl 85.5 0.34 1.2E-05 45.6 2.3 26 531-556 11-36 (180)
276 2c95_A Adenylate kinase 1; tra 85.5 0.42 1.4E-05 45.0 2.9 27 530-556 8-34 (196)
277 2nq2_C Hypothetical ABC transp 85.5 0.33 1.1E-05 49.8 2.3 23 532-554 32-54 (253)
278 1z0f_A RAB14, member RAS oncog 85.5 0.35 1.2E-05 44.0 2.3 37 745-782 64-100 (179)
279 2ixe_A Antigen peptide transpo 85.5 0.34 1.2E-05 50.2 2.4 25 532-556 46-70 (271)
280 4g1u_C Hemin import ATP-bindin 85.5 0.32 1.1E-05 50.3 2.3 25 532-556 38-62 (266)
281 2hup_A RAS-related protein RAB 85.4 0.32 1.1E-05 46.6 2.0 37 745-782 78-114 (201)
282 2p5t_B PEZT; postsegregational 85.4 0.32 1.1E-05 49.1 2.2 27 530-556 31-57 (253)
283 1qf9_A UMP/CMP kinase, protein 85.3 0.39 1.3E-05 44.8 2.6 25 532-556 7-31 (194)
284 1h65_A Chloroplast outer envel 85.2 0.46 1.6E-05 48.2 3.2 24 529-552 37-60 (270)
285 1gvn_B Zeta; postsegregational 85.2 0.19 6.5E-06 52.3 0.4 24 530-553 32-55 (287)
286 1y63_A LMAJ004144AAA protein; 85.2 0.4 1.4E-05 45.8 2.6 24 531-554 10-33 (184)
287 2qt1_A Nicotinamide riboside k 85.2 0.44 1.5E-05 45.9 3.0 24 531-554 21-44 (207)
288 1zd8_A GTP:AMP phosphotransfer 85.2 0.39 1.3E-05 47.2 2.6 25 531-555 7-31 (227)
289 2pjz_A Hypothetical protein ST 85.2 0.36 1.2E-05 50.0 2.4 23 532-554 31-53 (263)
290 2fv8_A H6, RHO-related GTP-bin 85.2 0.79 2.7E-05 43.8 4.7 37 745-782 73-109 (207)
291 2yz2_A Putative ABC transporte 85.2 0.34 1.2E-05 49.9 2.3 25 532-556 34-58 (266)
292 2olj_A Amino acid ABC transpor 85.1 0.34 1.2E-05 50.1 2.3 25 532-556 51-75 (263)
293 1uf9_A TT1252 protein; P-loop, 85.1 0.46 1.6E-05 45.0 3.0 24 531-554 8-31 (203)
294 2vli_A Antibiotic resistance p 85.1 0.36 1.2E-05 45.1 2.2 25 532-556 6-30 (183)
295 2cdn_A Adenylate kinase; phosp 85.1 0.41 1.4E-05 45.9 2.6 28 529-556 18-45 (201)
296 1n0w_A DNA repair protein RAD5 85.1 0.36 1.2E-05 46.9 2.3 21 533-553 26-46 (243)
297 2zu0_C Probable ATP-dependent 85.0 0.35 1.2E-05 49.9 2.3 23 532-554 47-69 (267)
298 2y8e_A RAB-protein 6, GH09086P 84.9 0.53 1.8E-05 42.8 3.2 36 745-781 63-98 (179)
299 1nn5_A Similar to deoxythymidy 84.8 0.46 1.6E-05 45.4 2.9 25 530-554 8-32 (215)
300 2wwf_A Thymidilate kinase, put 84.8 0.45 1.5E-05 45.5 2.8 24 531-554 10-33 (212)
301 2ihy_A ABC transporter, ATP-bi 84.8 0.38 1.3E-05 50.1 2.4 26 531-556 47-72 (279)
302 1gwn_A RHO-related GTP-binding 84.8 0.88 3E-05 44.0 4.9 37 745-782 76-112 (205)
303 1e6c_A Shikimate kinase; phosp 84.7 0.41 1.4E-05 44.3 2.4 24 533-556 4-27 (173)
304 1cr0_A DNA primase/helicase; R 84.7 0.39 1.3E-05 49.1 2.4 23 533-555 37-59 (296)
305 2pbr_A DTMP kinase, thymidylat 84.7 0.44 1.5E-05 44.6 2.6 22 533-554 2-23 (195)
306 3r7w_A Gtpase1, GTP-binding pr 84.7 0.43 1.5E-05 49.7 2.8 22 530-551 2-23 (307)
307 2gco_A H9, RHO-related GTP-bin 84.6 0.7 2.4E-05 44.0 4.0 37 745-782 73-109 (201)
308 3l0i_B RAS-related protein RAB 84.6 0.45 1.5E-05 45.1 2.7 37 745-782 82-118 (199)
309 2yvu_A Probable adenylyl-sulfa 84.4 0.34 1.2E-05 45.9 1.7 23 530-552 12-34 (186)
310 3r7w_A Gtpase1, GTP-binding pr 84.3 0.84 2.9E-05 47.6 4.8 37 745-782 52-93 (307)
311 2jeo_A Uridine-cytidine kinase 84.2 0.49 1.7E-05 47.3 2.8 27 530-556 24-50 (245)
312 1vfy_A Phosphatidylinositol-3- 84.1 0.2 6.7E-06 42.7 -0.1 47 272-318 12-64 (73)
313 2qag_A Septin-2, protein NEDD5 84.1 0.42 1.4E-05 51.3 2.5 25 527-551 33-57 (361)
314 2pez_A Bifunctional 3'-phospho 84.1 0.46 1.6E-05 44.8 2.5 24 532-555 6-29 (179)
315 2ew1_A RAS-related protein RAB 84.1 0.75 2.6E-05 44.5 4.0 37 745-782 75-111 (201)
316 2i3b_A HCR-ntpase, human cance 84.1 0.41 1.4E-05 47.0 2.2 20 533-552 3-22 (189)
317 1zak_A Adenylate kinase; ATP:A 84.1 0.45 1.5E-05 46.5 2.5 26 531-556 5-30 (222)
318 1nlf_A Regulatory protein REPA 84.1 0.43 1.5E-05 48.6 2.4 24 532-555 31-54 (279)
319 4gzl_A RAS-related C3 botulinu 84.0 1 3.4E-05 43.2 4.9 26 526-551 25-50 (204)
320 3be4_A Adenylate kinase; malar 84.0 0.56 1.9E-05 45.9 3.1 26 531-556 5-30 (217)
321 2wkq_A NPH1-1, RAS-related C3 83.9 0.59 2E-05 47.5 3.4 26 527-552 151-176 (332)
322 2fg5_A RAB-22B, RAS-related pr 83.9 0.73 2.5E-05 43.4 3.8 37 745-782 72-108 (192)
323 1ukz_A Uridylate kinase; trans 83.8 0.55 1.9E-05 44.9 2.9 26 531-556 15-40 (203)
324 3lvq_E ARF-GAP with SH3 domain 83.8 0.48 1.6E-05 52.2 2.8 26 527-552 318-343 (497)
325 1rz3_A Hypothetical protein rb 83.8 0.52 1.8E-05 45.7 2.8 26 530-555 21-46 (201)
326 3bos_A Putative DNA replicatio 83.7 0.69 2.4E-05 44.3 3.6 28 525-552 46-73 (242)
327 3r7w_B Gtpase2, GTP-binding pr 83.7 0.48 1.6E-05 51.3 2.7 36 745-781 46-84 (331)
328 2v54_A DTMP kinase, thymidylat 83.7 0.51 1.7E-05 44.8 2.6 25 531-555 4-28 (204)
329 3gj0_A GTP-binding nuclear pro 83.7 0.72 2.4E-05 44.5 3.7 37 745-782 64-100 (221)
330 2ce2_X GTPase HRAS; signaling 83.6 0.58 2E-05 41.6 2.8 37 745-782 51-87 (166)
331 2bbs_A Cystic fibrosis transme 83.6 0.47 1.6E-05 49.8 2.6 21 532-552 65-85 (290)
332 1zuh_A Shikimate kinase; alpha 83.5 0.49 1.7E-05 43.9 2.4 26 531-556 7-32 (168)
333 2z0h_A DTMP kinase, thymidylat 83.4 0.51 1.7E-05 44.5 2.4 23 533-555 2-24 (197)
334 3c5c_A RAS-like protein 12; GD 83.4 2 6.9E-05 40.4 6.6 35 745-781 69-103 (187)
335 4e22_A Cytidylate kinase; P-lo 83.4 0.48 1.7E-05 47.9 2.4 22 531-552 27-48 (252)
336 2ged_A SR-beta, signal recogni 83.4 0.32 1.1E-05 45.5 1.1 35 745-780 91-129 (193)
337 3c5h_A Glucocorticoid receptor 83.4 0.55 1.9E-05 47.4 2.9 25 528-552 16-49 (255)
338 3i8s_A Ferrous iron transport 83.3 0.54 1.8E-05 48.2 2.8 22 530-551 2-23 (274)
339 3clv_A RAB5 protein, putative; 83.3 0.7 2.4E-05 42.6 3.3 23 529-551 5-27 (208)
340 1z2a_A RAS-related protein RAB 83.2 0.63 2.1E-05 41.9 2.9 37 745-782 54-90 (168)
341 3o47_A ADP-ribosylation factor 83.1 0.46 1.6E-05 50.1 2.3 25 527-551 161-185 (329)
342 2ze6_A Isopentenyl transferase 83.0 0.48 1.7E-05 48.1 2.3 19 534-552 4-22 (253)
343 2f1r_A Molybdopterin-guanine d 82.9 0.35 1.2E-05 47.0 1.1 28 533-560 4-31 (171)
344 2il1_A RAB12; G-protein, GDP, 82.8 0.44 1.5E-05 45.1 1.8 38 745-783 75-112 (192)
345 1z0j_A RAB-22, RAS-related pro 82.8 0.91 3.1E-05 40.9 3.8 37 745-782 55-91 (170)
346 1z2q_A LM5-1; membrane protein 82.7 0.26 9E-06 43.0 0.2 48 271-318 21-74 (84)
347 2xb4_A Adenylate kinase; ATP-b 82.6 0.57 2E-05 46.2 2.6 24 533-556 2-25 (223)
348 4dkx_A RAS-related protein RAB 82.5 0.86 3E-05 45.4 3.8 38 745-783 62-99 (216)
349 3aez_A Pantothenate kinase; tr 82.3 0.61 2.1E-05 49.4 2.8 27 530-556 89-115 (312)
350 1jbk_A CLPB protein; beta barr 82.2 0.52 1.8E-05 43.0 1.9 24 529-552 41-64 (195)
351 2v9p_A Replication protein E1; 82.1 0.57 1.9E-05 49.9 2.5 27 529-555 124-150 (305)
352 4djt_A GTP-binding nuclear pro 82.1 0.92 3.2E-05 43.4 3.8 37 745-782 61-97 (218)
353 1sq5_A Pantothenate kinase; P- 82.0 0.67 2.3E-05 48.4 3.0 27 530-556 79-105 (308)
354 3iby_A Ferrous iron transport 82.0 0.61 2.1E-05 47.6 2.6 20 532-551 2-21 (256)
355 1vht_A Dephospho-COA kinase; s 82.0 0.68 2.3E-05 44.9 2.8 23 531-553 4-26 (218)
356 1nrj_B SR-beta, signal recogni 82.0 0.34 1.2E-05 46.4 0.7 35 745-780 55-93 (218)
357 3q85_A GTP-binding protein REM 82.0 0.59 2E-05 42.3 2.2 36 745-781 51-87 (169)
358 1gtv_A TMK, thymidylate kinase 81.9 0.36 1.2E-05 46.2 0.8 23 533-555 2-24 (214)
359 1uj2_A Uridine-cytidine kinase 81.9 0.77 2.6E-05 46.1 3.2 26 529-554 20-45 (252)
360 3sr0_A Adenylate kinase; phosp 81.8 0.73 2.5E-05 45.9 3.0 24 533-556 2-25 (206)
361 1dvp_A HRS, hepatocyte growth 81.8 0.31 1.1E-05 49.1 0.4 47 272-318 162-214 (220)
362 2qag_C Septin-7; cell cycle, c 81.8 0.6 2E-05 51.7 2.6 22 531-552 31-52 (418)
363 2j1l_A RHO-related GTP-binding 81.6 0.72 2.5E-05 44.5 2.8 37 745-782 82-118 (214)
364 3ney_A 55 kDa erythrocyte memb 81.6 0.6 2E-05 46.7 2.3 25 532-556 20-44 (197)
365 1m7g_A Adenylylsulfate kinase; 81.6 0.64 2.2E-05 45.2 2.4 26 527-552 21-46 (211)
366 1ex7_A Guanylate kinase; subst 81.6 0.68 2.3E-05 45.8 2.7 21 534-554 4-24 (186)
367 3tui_C Methionine import ATP-b 81.4 0.66 2.3E-05 50.7 2.7 25 533-557 56-80 (366)
368 1ixz_A ATP-dependent metallopr 81.4 0.61 2.1E-05 46.4 2.3 23 534-556 52-74 (254)
369 1tf7_A KAIC; homohexamer, hexa 81.4 0.59 2E-05 52.4 2.4 21 531-551 39-59 (525)
370 2gza_A Type IV secretion syste 81.3 0.62 2.1E-05 50.0 2.4 29 528-556 172-200 (361)
371 3fvq_A Fe(3+) IONS import ATP- 81.2 0.62 2.1E-05 50.8 2.4 25 533-557 32-56 (359)
372 1z47_A CYSA, putative ABC-tran 81.1 0.6 2.1E-05 50.7 2.3 25 532-556 42-66 (355)
373 3jvv_A Twitching mobility prot 80.9 0.61 2.1E-05 50.4 2.3 22 533-554 125-147 (356)
374 2o52_A RAS-related protein RAB 80.8 0.56 1.9E-05 44.7 1.7 38 745-783 74-111 (200)
375 1ltq_A Polynucleotide kinase; 80.7 0.65 2.2E-05 47.2 2.3 21 533-553 4-24 (301)
376 2nzj_A GTP-binding protein REM 80.7 1.2 4.1E-05 40.4 3.8 36 745-781 52-89 (175)
377 2yyz_A Sugar ABC transporter, 80.7 0.64 2.2E-05 50.5 2.3 25 533-557 31-55 (359)
378 3a4m_A L-seryl-tRNA(SEC) kinas 80.6 0.7 2.4E-05 46.8 2.5 22 532-553 5-26 (260)
379 2ro1_A Transcription intermedi 80.6 1.2 4.2E-05 44.2 4.1 48 272-322 3-51 (189)
380 2kjq_A DNAA-related protein; s 80.5 0.74 2.5E-05 43.2 2.4 25 531-555 36-60 (149)
381 1r5b_A Eukaryotic peptide chai 80.5 0.71 2.4E-05 51.3 2.6 49 518-568 30-78 (467)
382 1g29_1 MALK, maltose transport 80.4 0.65 2.2E-05 50.6 2.3 24 533-556 31-54 (372)
383 2x8a_A Nuclear valosin-contain 80.4 0.66 2.3E-05 47.8 2.2 23 534-556 47-69 (274)
384 1f2t_A RAD50 ABC-ATPase; DNA d 80.4 0.78 2.7E-05 43.1 2.5 23 534-556 26-49 (149)
385 2pt7_A CAG-ALFA; ATPase, prote 80.4 0.61 2.1E-05 49.6 2.0 26 531-556 171-196 (330)
386 2p5s_A RAS and EF-hand domain 80.3 0.58 2E-05 44.4 1.6 37 745-782 77-113 (199)
387 2obl_A ESCN; ATPase, hydrolase 80.3 0.74 2.5E-05 49.6 2.6 31 526-556 66-96 (347)
388 1v43_A Sugar-binding transport 80.2 0.67 2.3E-05 50.6 2.3 26 532-557 38-63 (372)
389 2it1_A 362AA long hypothetical 80.1 0.68 2.3E-05 50.3 2.3 25 532-556 30-54 (362)
390 3nh6_A ATP-binding cassette SU 80.0 0.49 1.7E-05 50.2 1.1 27 531-557 80-106 (306)
391 3rlf_A Maltose/maltodextrin im 79.9 0.69 2.4E-05 50.8 2.3 25 533-557 31-55 (381)
392 2ewv_A Twitching motility prot 79.9 0.71 2.4E-05 49.9 2.3 27 530-556 135-161 (372)
393 1y02_A CARP2, FYVE-ring finger 79.9 0.58 2E-05 44.0 1.4 45 272-319 20-65 (120)
394 3dz8_A RAS-related protein RAB 79.9 0.4 1.4E-05 45.1 0.3 36 745-781 72-107 (191)
395 2dr3_A UPF0273 protein PH0284; 79.8 0.79 2.7E-05 44.5 2.4 19 533-551 25-43 (247)
396 2erx_A GTP-binding protein DI- 79.8 0.64 2.2E-05 41.8 1.7 37 745-782 51-87 (172)
397 1ak2_A Adenylate kinase isoenz 79.6 0.84 2.9E-05 45.2 2.5 26 531-556 16-41 (233)
398 3zyq_A Hepatocyte growth facto 79.5 0.78 2.7E-05 46.7 2.3 47 272-318 165-217 (226)
399 1bif_A 6-phosphofructo-2-kinas 79.5 0.85 2.9E-05 50.4 2.8 24 529-552 37-60 (469)
400 1rj9_A FTSY, signal recognitio 79.3 1 3.5E-05 47.5 3.3 27 531-557 102-128 (304)
401 2iwr_A Centaurin gamma 1; ANK 79.3 1.6 5.4E-05 40.0 4.2 31 745-781 54-84 (178)
402 1p9r_A General secretion pathw 79.1 0.75 2.6E-05 50.9 2.3 20 533-552 169-188 (418)
403 1iy2_A ATP-dependent metallopr 78.9 0.81 2.8E-05 46.4 2.3 23 534-556 76-98 (278)
404 3tqc_A Pantothenate kinase; bi 78.8 0.95 3.2E-05 48.4 2.8 25 532-556 93-117 (321)
405 3nwj_A ATSK2; P loop, shikimat 78.5 0.84 2.9E-05 46.9 2.3 23 531-553 48-70 (250)
406 3dpu_A RAB family protein; roc 78.5 0.93 3.2E-05 50.8 2.8 24 529-552 39-62 (535)
407 2npi_A Protein CLP1; CLP1-PCF1 78.4 0.85 2.9E-05 51.0 2.4 27 528-554 135-161 (460)
408 1nij_A Hypothetical protein YJ 78.4 0.95 3.3E-05 47.5 2.7 20 533-552 6-25 (318)
409 2chg_A Replication factor C sm 78.4 1.1 3.7E-05 41.8 2.8 28 525-552 32-59 (226)
410 1fp0_A KAP-1 corepressor; PHD 78.3 2.7 9.3E-05 37.5 5.2 49 272-323 26-75 (88)
411 2p65_A Hypothetical protein PF 78.2 0.66 2.3E-05 42.5 1.2 25 528-552 40-64 (187)
412 2dpy_A FLII, flagellum-specifi 78.0 0.93 3.2E-05 50.3 2.6 30 527-556 153-182 (438)
413 3d31_A Sulfate/molybdate ABC t 78.0 0.59 2E-05 50.5 1.0 25 533-557 28-52 (348)
414 1odf_A YGR205W, hypothetical 3 77.9 1.1 3.6E-05 47.0 2.8 28 529-556 29-56 (290)
415 3gd7_A Fusion complex of cysti 77.8 0.91 3.1E-05 49.8 2.4 22 531-552 47-68 (390)
416 2f6r_A COA synthase, bifunctio 77.8 1.1 3.9E-05 46.1 3.0 23 531-553 75-97 (281)
417 2qag_B Septin-6, protein NEDD5 77.7 1 3.5E-05 50.2 2.8 21 531-551 42-62 (427)
418 2gf0_A GTP-binding protein DI- 77.7 0.78 2.7E-05 42.8 1.6 37 745-782 56-92 (199)
419 1joc_A EEA1, early endosomal a 77.7 0.68 2.3E-05 43.4 1.2 48 271-318 69-120 (125)
420 2yw8_A RUN and FYVE domain-con 77.5 0.74 2.5E-05 40.0 1.3 48 272-319 20-71 (82)
421 3b9q_A Chloroplast SRP recepto 77.5 0.93 3.2E-05 47.8 2.3 25 532-556 101-125 (302)
422 2yv5_A YJEQ protein; hydrolase 77.4 1.3 4.5E-05 46.3 3.4 25 531-556 165-189 (302)
423 1q3t_A Cytidylate kinase; nucl 77.4 1.1 3.7E-05 44.5 2.6 27 527-553 12-38 (236)
424 2grj_A Dephospho-COA kinase; T 77.2 1.3 4.3E-05 43.7 3.0 28 529-556 10-37 (192)
425 2aka_B Dynamin-1; fusion prote 77.1 1.1 3.8E-05 45.2 2.7 22 530-551 25-46 (299)
426 1mky_A Probable GTP-binding pr 77.1 1.1 3.6E-05 49.2 2.7 22 531-552 180-201 (439)
427 1u0l_A Probable GTPase ENGC; p 77.1 1.3 4.5E-05 46.1 3.3 26 530-555 168-193 (301)
428 1pzn_A RAD51, DNA repair and r 77.1 1 3.4E-05 48.3 2.4 24 532-555 132-155 (349)
429 2dyk_A GTP-binding protein; GT 77.0 2.4 8.1E-05 37.8 4.5 36 745-781 49-91 (161)
430 2qtf_A Protein HFLX, GTP-bindi 76.9 0.98 3.3E-05 48.8 2.3 22 530-551 177-199 (364)
431 2vp4_A Deoxynucleoside kinase; 76.9 0.73 2.5E-05 45.7 1.2 23 531-553 20-42 (230)
432 2www_A Methylmalonic aciduria 76.9 1.1 3.8E-05 47.9 2.7 22 531-552 74-95 (349)
433 1njg_A DNA polymerase III subu 76.9 1 3.6E-05 42.3 2.3 20 533-552 47-66 (250)
434 3umf_A Adenylate kinase; rossm 76.8 1.2 4.2E-05 44.9 2.9 23 534-556 32-54 (217)
435 1oxx_K GLCV, glucose, ABC tran 76.5 0.58 2E-05 50.6 0.4 24 533-556 33-56 (353)
436 3ake_A Cytidylate kinase; CMP 76.3 1.3 4.6E-05 41.9 2.8 24 533-556 4-27 (208)
437 1c9k_A COBU, adenosylcobinamid 76.2 1.2 4E-05 44.2 2.4 19 534-552 2-20 (180)
438 3th5_A RAS-related C3 botulinu 77.8 0.54 1.9E-05 44.6 0.0 37 745-782 78-114 (204)
439 1ega_A Protein (GTP-binding pr 75.7 1.3 4.4E-05 46.2 2.8 23 530-552 7-29 (301)
440 1lv7_A FTSH; alpha/beta domain 75.6 1.1 3.9E-05 44.5 2.3 21 532-552 46-66 (257)
441 3r20_A Cytidylate kinase; stru 75.6 1.2 4.2E-05 45.6 2.5 24 531-554 9-32 (233)
442 1zun_B Sulfate adenylate trans 75.5 0.97 3.3E-05 49.4 1.8 37 515-551 5-44 (434)
443 3ihw_A Centg3; RAS, centaurin, 74.9 1.9 6.6E-05 40.6 3.5 31 745-781 67-97 (184)
444 2oap_1 GSPE-2, type II secreti 74.8 1.2 4.1E-05 50.4 2.4 20 533-552 262-281 (511)
445 1x4u_A Zinc finger, FYVE domai 74.8 1.4 4.7E-05 38.4 2.2 47 272-318 15-73 (84)
446 3cbq_A GTP-binding protein REM 74.8 1.1 3.9E-05 42.7 1.9 36 745-781 72-108 (195)
447 1yqt_A RNAse L inhibitor; ATP- 74.8 1.2 4.2E-05 50.5 2.4 25 532-556 48-72 (538)
448 1wfk_A Zinc finger, FYVE domai 74.7 0.78 2.7E-05 40.6 0.7 47 272-319 10-62 (88)
449 2w58_A DNAI, primosome compone 74.4 1.3 4.5E-05 42.2 2.3 21 532-552 55-75 (202)
450 3e70_C DPA, signal recognition 74.3 1.4 4.9E-05 47.0 2.7 29 529-557 127-155 (328)
451 1np6_A Molybdopterin-guanine d 74.2 1.3 4.6E-05 43.0 2.3 20 533-552 8-27 (174)
452 3qks_A DNA double-strand break 74.0 1.5 5E-05 43.1 2.5 23 534-556 26-48 (203)
453 2qm8_A GTPase/ATPase; G protei 73.6 1.5 5.1E-05 46.7 2.6 24 529-552 53-76 (337)
454 3b60_A Lipid A export ATP-bind 73.5 1.4 4.8E-05 50.1 2.6 27 531-557 369-395 (582)
455 3r7w_B Gtpase2, GTP-binding pr 73.3 1.5 5E-05 47.5 2.5 18 533-550 1-18 (331)
456 2yl4_A ATP-binding cassette SU 73.3 1.5 5.1E-05 50.0 2.7 27 531-557 370-396 (595)
457 2e87_A Hypothetical protein PH 73.1 1.5 5.1E-05 46.6 2.5 23 529-551 165-187 (357)
458 2o8b_B DNA mismatch repair pro 73.1 1.5 5.1E-05 53.8 2.7 23 532-554 790-812 (1022)
459 1wb9_A DNA mismatch repair pro 73.1 1.3 4.5E-05 52.8 2.3 23 532-554 608-630 (800)
460 1wf3_A GTP-binding protein; GT 73.0 1.6 5.6E-05 45.6 2.7 23 530-552 6-28 (301)
461 1in4_A RUVB, holliday junction 73.0 1.4 4.8E-05 46.3 2.2 21 532-552 52-72 (334)
462 1jny_A EF-1-alpha, elongation 72.9 1.7 5.8E-05 47.6 3.0 38 528-567 3-40 (435)
463 2yhs_A FTSY, cell division pro 72.9 1.4 4.7E-05 50.2 2.3 26 531-556 293-318 (503)
464 4eaq_A DTMP kinase, thymidylat 72.8 1.6 5.4E-05 43.8 2.4 27 530-556 25-51 (229)
465 3zvl_A Bifunctional polynucleo 72.8 1.4 4.8E-05 48.1 2.2 38 532-569 259-296 (416)
466 3b5x_A Lipid A export ATP-bind 72.6 1.4 4.9E-05 50.0 2.3 28 530-557 368-395 (582)
467 1ni3_A YCHF GTPase, YCHF GTP-b 72.3 1.7 5.8E-05 47.8 2.7 24 529-552 18-41 (392)
468 2og2_A Putative signal recogni 72.2 1.5 5.1E-05 47.6 2.3 26 531-556 157-182 (359)
469 3ozx_A RNAse L inhibitor; ATP 71.5 1.5 5.3E-05 49.8 2.3 24 534-557 28-51 (538)
470 3lda_A DNA repair protein RAD5 71.5 1.6 5.6E-05 47.9 2.4 20 533-552 180-199 (400)
471 2c78_A Elongation factor TU-A; 71.3 1.9 6.5E-05 46.6 2.8 28 526-553 6-33 (405)
472 3sjy_A Translation initiation 71.3 1.6 5.4E-05 47.2 2.2 25 528-552 5-29 (403)
473 1ewq_A DNA mismatch repair pro 71.1 1.8 6.2E-05 51.5 2.8 23 532-554 577-599 (765)
474 3qf4_B Uncharacterized ABC tra 71.0 1.8 6.1E-05 49.5 2.7 28 530-557 380-407 (598)
475 3h4m_A Proteasome-activating n 70.9 1.8 6E-05 43.5 2.3 23 530-552 50-72 (285)
476 1tf7_A KAIC; homohexamer, hexa 70.8 1.7 5.9E-05 48.7 2.4 25 531-555 281-305 (525)
477 3bk7_A ABC transporter ATP-bin 70.7 1.7 5.9E-05 50.2 2.4 25 532-556 118-142 (607)
478 2dby_A GTP-binding protein; GD 70.3 1.8 6E-05 47.2 2.3 22 532-553 2-23 (368)
479 3b9p_A CG5977-PA, isoform A; A 70.1 1.8 6.3E-05 43.7 2.3 22 531-552 54-75 (297)
480 3geh_A MNME, tRNA modification 69.8 2.2 7.6E-05 47.6 3.0 27 526-552 219-245 (462)
481 3j16_B RLI1P; ribosome recycli 69.8 1.8 6E-05 50.2 2.3 26 532-557 104-129 (608)
482 1yrb_A ATP(GTP)binding protein 69.7 2.2 7.5E-05 42.1 2.7 24 529-552 12-35 (262)
483 2qby_A CDC6 homolog 1, cell di 69.7 1.9 6.4E-05 44.3 2.2 24 529-552 43-66 (386)
484 2rcn_A Probable GTPase ENGC; Y 69.7 1.9 6.3E-05 47.0 2.3 20 533-552 217-236 (358)
485 2px0_A Flagellar biosynthesis 69.5 2 6.8E-05 45.0 2.4 25 532-556 106-130 (296)
486 3p32_A Probable GTPase RV1496/ 69.4 2.1 7.2E-05 45.5 2.6 26 529-554 77-102 (355)
487 1d2e_A Elongation factor TU (E 69.4 2.2 7.4E-05 46.1 2.8 23 530-552 2-24 (397)
488 2qz4_A Paraplegin; AAA+, SPG7, 69.3 2 6.8E-05 42.3 2.2 21 532-552 40-60 (262)
489 1svm_A Large T antigen; AAA+ f 69.2 1.9 6.5E-05 47.1 2.3 26 531-556 169-194 (377)
490 3thx_A DNA mismatch repair pro 69.1 2.1 7.1E-05 52.1 2.7 19 533-551 664-682 (934)
491 3t34_A Dynamin-related protein 68.9 2.1 7.1E-05 45.4 2.5 21 532-552 35-55 (360)
492 1u0l_A Probable GTPase ENGC; p 68.6 7.6 0.00026 40.3 6.6 35 746-783 64-98 (301)
493 4dcu_A GTP-binding protein ENG 68.5 2.1 7.2E-05 47.0 2.5 22 530-551 22-43 (456)
494 1kk1_A EIF2gamma; initiation o 68.4 2.1 7.1E-05 46.3 2.4 25 528-552 7-31 (410)
495 1a7j_A Phosphoribulokinase; tr 68.3 2.3 7.7E-05 44.4 2.5 23 532-554 6-28 (290)
496 3p26_A Elongation factor 1 alp 68.3 2.1 7.1E-05 47.6 2.4 26 526-551 28-53 (483)
497 3euj_A Chromosome partition pr 68.1 2.7 9.2E-05 47.6 3.2 26 532-557 30-55 (483)
498 1tq4_A IIGP1, interferon-induc 68.0 2.2 7.4E-05 47.3 2.4 24 532-555 70-93 (413)
499 1l8q_A Chromosomal replication 68.0 2.2 7.5E-05 44.0 2.3 22 531-552 37-58 (324)
500 1sxj_E Activator 1 40 kDa subu 67.8 1.9 6.4E-05 44.7 1.8 24 533-556 38-62 (354)
No 1
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=100.00 E-value=8.3e-58 Score=492.38 Aligned_cols=255 Identities=30% Similarity=0.482 Sum_probs=206.4
Q ss_pred CCcccccccccccCch-hHHHhcceeeEEEeecCCCCchhHHHHHHHHhcCCCCCHHHhhhhHHHHHHHHHHHHHHHHhh
Q 003444 508 NPGAEQGSGLMSRSVP-DYIERRTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEG 586 (819)
Q Consensus 508 ~~~a~~~S~~IDr~L~-dk~~~k~~vKLLLLGaGESGKSTIlKQMKILy~p~GFS~eEr~~~K~iIqsNIi~sm~iLLea 586 (819)
..+++++|++||++|+ ++++.++++||||||+||||||||+|||||||+ +||+++|++.||.+||.|++++|+.||++
T Consensus 8 ~~~~~~~s~~id~~l~~~~~~~~~~~klLlLG~geSGKST~~KQmkii~~-~g~~~~e~~~~~~~i~~N~~~~~~~l~~~ 86 (353)
T 1cip_A 8 DKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHE-AGYSEEECKQYKAVVYSNTIQSIIAIIRA 86 (353)
T ss_dssp -----------------------CEEEEEEECSTTSSHHHHHHHHHHHHS-CCCCHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHhhcccceEEEEcCCCCCchhHHHHHHHhhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467789999999998 888999999999999999999999999999999 89999999999999999999999999999
Q ss_pred hccchhhHHHhhhhcCCCCCCCCCCCCCCCCCcceeccchhhHHhHHHHHhhhhcCCccccCcccchhHHHHHHHHhcCH
Q 003444 587 RERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDA 666 (819)
Q Consensus 587 ~e~fe~e~l~e~r~~~spde~~~~g~~~~~~~~~Iysi~~rlk~fsdwll~~~~~g~ld~~fp~~t~E~A~aI~eLWkDp 666 (819)
|+.++++. +++ .++..+++++......+ +. .++.+++++|..||+||
T Consensus 87 ~~~~~i~~----------------~~~-------------~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~i~~lw~d~ 133 (353)
T 1cip_A 87 MGRLKIDF----------------GDA-------------ARADDARQLFVLAGAAE-EG---FMTAELAGVIKRLWKDS 133 (353)
T ss_dssp HHHHTCCC----------------SST-------------THHHHHHHHHHHHHHHT-TT---CCCHHHHHHHHHHHHCH
T ss_pred HHHhCCCC----------------CCc-------------chHHHHHHHHhhccccc-cc---cCCHHHHHHHHHHHCCH
Confidence 99876542 111 12334555555432111 11 24579999999999999
Q ss_pred HHHHHHhcccchhhcccchhhhhhcccccccCCCCCCccceeeeecccccCCeeEEEEEcCCCCCCCCcccccccccccc
Q 003444 667 AIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSLLR 746 (819)
Q Consensus 667 gIQ~~y~RRnEfq~LpDSA~YFLdnIdRIaspDYvPTdqDILraR~kT~stGItE~eF~~~~~~~~~~~D~ggqr~~~l~ 746 (819)
+||+||.||+||+ |+|+|.|||++++||+.++|+||++|||++|.+| +||.+..|.++. ++
T Consensus 134 ~iq~~~~~~~e~~-l~dsa~yfl~~~~ri~~~~Y~PT~~Dil~~~~~T--~Gi~~~~~~~~~----------------~~ 194 (353)
T 1cip_A 134 GVQACFNRSREYQ-LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKT--TGIVETHFTFKD----------------LH 194 (353)
T ss_dssp HHHHHHTTGGGSC-CCTTHHHHHTTHHHHTSTTCCCCHHHHHTCCCCC--CSEEEEEEEETT----------------EE
T ss_pred HHHHHHHhhhhcc-cCccHHHHHHHHHHHhcCCCCCCccccccccCce--eceEEEEEeeCC----------------ee
Confidence 9999999999999 8999999999999999999999999999999998 699999998865 78
Q ss_pred EEEEEecccccccccccccccCCCCEEEEEEeCCCccccc-ccCCCCccchHHHHHHHHHHHhccccccCCCCC
Q 003444 747 YQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFS-VDGNGSLMNKMMLSRKFFESIVTIQLLIRWNFF 819 (819)
Q Consensus 747 frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYDQ~l-ED~~G~~~NRM~ESL~LFEsI~nnp~F~~t~f~ 819 (819)
+++||+||| +++|++|.+||+++++||||+|+++|||++ ||. ..|||++++.+|++|++++||.++|+|
T Consensus 195 l~iwDt~GQ-e~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~---~~nr~~e~~~~~~~i~~~~~~~~~pii 264 (353)
T 1cip_A 195 FKMFDVGGQ-RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE---EMNRMHESMKLFDSICNNKWFTDTSII 264 (353)
T ss_dssp EEEEEECCS-GGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEE---EEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred EEEEeCCCc-hhhhHHHHHHHhcCCEEEEEEECccccccccccc---hhhhHHHHHHHHHHHHcCccccCCcEE
Confidence 999999999 899999999999999999999999999995 555 799999999999999999999999875
No 2
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=100.00 E-value=1.3e-57 Score=487.40 Aligned_cols=237 Identities=26% Similarity=0.455 Sum_probs=210.3
Q ss_pred HHhcceeeEEEeecCCCCchhHHHHHHHHhcCCCCCHHHhhhhHHHHHHHHHHHHHHHHhhhccchhhHHHhhhhcCCCC
Q 003444 526 IERRTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSD 605 (819)
Q Consensus 526 ~~~k~~vKLLLLGaGESGKSTIlKQMKILy~p~GFS~eEr~~~K~iIqsNIi~sm~iLLea~e~fe~e~l~e~r~~~spd 605 (819)
++.++++||||||+||||||||+|||||||+ +|||++|++.||++||.|++++|+.||++|+.++++.
T Consensus 2 ~~~~~~~klLlLG~geSGKSTi~KQmkiih~-~gfs~~e~~~~~~~i~~N~~~~~~~li~a~~~l~i~~----------- 69 (327)
T 3ohm_A 2 ADARRELKLLLLGTGESGKSTFIKQMRIIHG-SGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPY----------- 69 (327)
T ss_dssp ---CCEEEEEEECSTTSSHHHHHHHHHHHHS-CCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCC-----------
T ss_pred chhcccceEEEEcCCCccHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCC-----------
Confidence 3567899999999999999999999999999 9999999999999999999999999999999887542
Q ss_pred CCCCCCCCCCCCCcceeccchhhHHhHHHHHhhhhcCCccccCcccchhHHHHHHHHhcCHHHHHHHhcccchhhcccch
Q 003444 606 ETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSVA 685 (819)
Q Consensus 606 e~~~~g~~~~~~~~~Iysi~~rlk~fsdwll~~~~~g~ld~~fp~~t~E~A~aI~eLWkDpgIQ~~y~RRnEfq~LpDSA 685 (819)
++ +.++.+++++++..... . ..++++++++|.+||+||+||+||+||+||| |+|+|
T Consensus 70 -----~~-------------~~~~~~~~~~~~~~~~~--~---~~~~~e~~~~i~~lW~d~~iq~~~~r~~e~~-l~d~~ 125 (327)
T 3ohm_A 70 -----KY-------------EHNKAHAQLVREVDVEK--V---SAFENPYVDAIKSLWNDPGIQECYDRRREYQ-LSDST 125 (327)
T ss_dssp -----SS-------------THHHHHHHHHHTCCGGG--C---CCCCTTHHHHHHHHHTCHHHHHHHHGGGGSC-CCTTH
T ss_pred -----CC-------------chhHHHHHHHhcccccc--c---ccccHHHHHHHHHHHcCHHHHHHHHccccce-ecccH
Confidence 11 23355677776542211 1 2355799999999999999999999999999 89999
Q ss_pred hhhhhcccccccCCCCCCccceeeeecccccCCeeEEEEEcCCCCCCCCccccccccccccEEEEEeccccccccccccc
Q 003444 686 SYFLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRYQLIRVQARGLGENCKWLE 765 (819)
Q Consensus 686 ~YFLdnIdRIaspDYvPTdqDILraR~kT~stGItE~eF~~~~~~~~~~~D~ggqr~~~l~frLiDVGGQgrsERkKWi~ 765 (819)
.|||++++||++++|.||++||||+|.+| +|+.++.|.++. +++++||+||| +++|++|.+
T Consensus 126 ~yfl~~l~Ri~~~~Y~PT~~Dilr~r~~T--iGi~~~~~~~~~----------------v~l~iwDtgGQ-e~~R~~w~~ 186 (327)
T 3ohm_A 126 KYYLNDLDRVADPSYLPTQQDVLRVRVPT--TGIIEYPFDLQS----------------VIFRMVDVGGQ-RSERRKWIH 186 (327)
T ss_dssp HHHHTTHHHHHSTTCCCCHHHHTTCCCCC--CSEEEEEEEETT----------------EEEEEEEECCS-HHHHTTGGG
T ss_pred HHHHHHHHHHhccCCCccccchhcccCce--eeEEEEEEEeec----------------eeeEEEEcCCc-hhHHHHHHH
Confidence 99999999999999999999999999999 599999999875 79999999999 899999999
Q ss_pred ccCCCCEEEEEEeCCCcccccccCCCCccchHHHHHHHHHHHhccccccCCCCC
Q 003444 766 MFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTIQLLIRWNFF 819 (819)
Q Consensus 766 ~FEdVtaVIFvVSLSdYDQ~lED~~G~~~NRM~ESL~LFEsI~nnp~F~~t~f~ 819 (819)
||+++++||||+|+|+|||++.|.+ ..|||++++.+|+++++++||.++|++
T Consensus 187 yf~~~~~iIfV~dls~ydq~l~d~~--~~nr~~es~~~~~~i~~~~~~~~~~ii 238 (327)
T 3ohm_A 187 CFENVTSIMFLVALSEYDQVLVESD--NENRMEESKALFRTIITYPWFQNSSVI 238 (327)
T ss_dssp GCSSCSEEEEEEEGGGGGCBCSSCT--TSBHHHHHHHHHHHHHTSGGGTTCEEE
T ss_pred HhCCCCEEEEEEECccccccccccc--cHhHHHHHHHHHHHHhhhhccCCceEE
Confidence 9999999999999999999986654 689999999999999999999999874
No 3
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=100.00 E-value=4.6e-57 Score=495.15 Aligned_cols=271 Identities=24% Similarity=0.416 Sum_probs=205.8
Q ss_pred cccccccccCCCC-CCCCcccccccccccCch-hHHHhcceeeEEEeecCCCCchhHHHHHHHHhcCCCCCHH-------
Q 003444 493 LVCAVLSLPVPSK-SSNPGAEQGSGLMSRSVP-DYIERRTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDD------- 563 (819)
Q Consensus 493 ~~c~~~Slp~p~~-~~~~~a~~~S~~IDr~L~-dk~~~k~~vKLLLLGaGESGKSTIlKQMKILy~p~GFS~e------- 563 (819)
|||.. |.+..+. ....+++++|++||++|+ |+++.++++||||||+||||||||+|||||||+ +|||++
T Consensus 1 mg~~~-s~~~~~~~~~~~~~~~~~~~Id~~l~~~~~~~~~~~klLLLG~geSGKSTi~KQmkiih~-~gfs~~E~~~~~~ 78 (402)
T 1azs_C 1 MGCLG-NSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHV-NGFNGEGGEEDPQ 78 (402)
T ss_dssp ------------------------------------CCTTEEEEEEEESTTSSHHHHHHHHHHHHC-CC-----------
T ss_pred CCCCC-CCccccccchhHHHHHHHHHHHHHHHHHHHHhhccceEEEecCCCCchhhHHHHHHHHhC-CCCChHHhhhhHH
Confidence 78877 6554432 345677888999999998 899999999999999999999999999999999 999986
Q ss_pred --------HhhhhHHHHHHHHHHHHHHHHhhhccchhhHHHhhhhcCCCCCCCCCCCCCCCCCcceeccchhhHHhHHHH
Q 003444 564 --------EHENIKLKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWL 635 (819)
Q Consensus 564 --------Er~~~K~iIqsNIi~sm~iLLea~e~fe~e~l~e~r~~~spde~~~~g~~~~~~~~~Iysi~~rlk~fsdwl 635 (819)
|+..|+.+|+.|++++|..||++|+.+.... .+++ +.++..++|+
T Consensus 79 ~~~~~~~~e~~~~~~~i~~Ni~~~~~~i~~a~~~l~~~i--------------~~~~-------------~~~~~~~~~~ 131 (402)
T 1azs_C 79 AARSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPV--------------ELAN-------------PENQFRVDYI 131 (402)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHHSSSCC--------------CCSS-------------GGGHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--------------ccCC-------------chhHHHHHHH
Confidence 6778999999999999999999998764210 0111 2334567888
Q ss_pred HhhhhcCCccccCcccchhHHHHHHHHhcCHHHHHHHhcccchhhcccchhhhhhcccccccCCCCCCccceeeeecccc
Q 003444 636 LKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEGVTS 715 (819)
Q Consensus 636 l~~~~~g~ld~~fp~~t~E~A~aI~eLWkDpgIQ~~y~RRnEfq~LpDSA~YFLdnIdRIaspDYvPTdqDILraR~kT~ 715 (819)
+..+...+ .. ++.+++++|..||+|++||+||.||+||+ |+|+|.|||++++||+.++|.||++|||++|++|
T Consensus 132 ~~~~~~~~--~~---~~~~~~~~i~~lW~d~~iq~~~~r~~e~~-l~d~~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T- 204 (402)
T 1azs_C 132 LSVMNVPD--FD---FPPEFYEHAKALWEDEGVRACYERSNEYQ-LIDCAQYFLDKIDVIKQDDYVPSDQDLLRCRVLT- 204 (402)
T ss_dssp HHTTTCSS--CC---CCHHHHHHHHHHHHCHHHHHHHTTGGGSC-CCTTHHHHHTTHHHHTCTTCCCCHHHHHHCCCCC-
T ss_pred HhhcccCC--CC---CCHHHHHHHHHHHcCHHHHHHHHhcccce-eccchhhHHHHHHHhhccccCCccccccccccce-
Confidence 77653322 22 45799999999999999999999999998 8999999999999999999999999999999998
Q ss_pred cCCeeEEEEEcCCCCCCCCccccccccccccEEEEEecccccccccccccccCCCCEEEEEEeCCCcccccccCCCCccc
Q 003444 716 SNGLACVDFSFPRSASDDSVDTADQHDSLLRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMN 795 (819)
Q Consensus 716 stGItE~eF~~~~~~~~~~~D~ggqr~~~l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYDQ~lED~~G~~~N 795 (819)
+||.+..|.++. +++++||+||| +.+|++|.+||+++++||||+|+++|||++.+++ ..|
T Consensus 205 -iGi~~~~~~~~~----------------v~l~iwDtaGQ-e~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~--~~n 264 (402)
T 1azs_C 205 -SGIFETKFQVDK----------------VNFHMFDVGGQ-RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN--QTN 264 (402)
T ss_dssp -CSEEEEEEEETT----------------EEEEEEEECCS-GGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTS--CSB
T ss_pred -eeeEEEEeecCC----------------ccceecccchh-hhhhhhhHhhccCCCEEEEEEECccccccccccc--ccc
Confidence 699999998865 78999999999 8999999999999999999999999999964433 689
Q ss_pred hHHHHHHHHHHHhccccccCCCCC
Q 003444 796 KMMLSRKFFESIVTIQLLIRWNFF 819 (819)
Q Consensus 796 RM~ESL~LFEsI~nnp~F~~t~f~ 819 (819)
+|++++.+|++|++++||.++++|
T Consensus 265 s~~e~~~~~~~i~~~~~~~~~pii 288 (402)
T 1azs_C 265 RLQEALNLFKSIWNNRWLRTISVI 288 (402)
T ss_dssp HHHHHHHHHHHHHTCTTCSSCCEE
T ss_pred hHHHHHHHHHHHHhcccCCCCeEE
Confidence 999999999999999999999874
No 4
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=100.00 E-value=8.6e-56 Score=478.16 Aligned_cols=264 Identities=28% Similarity=0.500 Sum_probs=198.0
Q ss_pred cccccccccCCCCCCCCcccccccccccCch-hHHHhcceeeEEEeecCCCCchhHHHHHHHHhcCCCCCHHHhhhhHHH
Q 003444 493 LVCAVLSLPVPSKSSNPGAEQGSGLMSRSVP-DYIERRTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLK 571 (819)
Q Consensus 493 ~~c~~~Slp~p~~~~~~~a~~~S~~IDr~L~-dk~~~k~~vKLLLLGaGESGKSTIlKQMKILy~p~GFS~eEr~~~K~i 571 (819)
|||.. |. ...+++++|++||++|+ ++++.++.+||||||+||||||||+|||||+|. .||+++|++.|+.+
T Consensus 1 mgc~~-~~------~~~~~~~~s~~Id~~l~~~~~~~~~~~killlG~~~SGKST~~kq~~i~~~-~~~~~~e~~~~~~~ 72 (362)
T 1zcb_A 1 MGCTL-SA------EDKAAVERSKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMRIIHG-QDFDQRAREEFRPT 72 (362)
T ss_dssp -------------------------------------CCCEEEEEECSTTSSHHHHHHHHHHHHS-CCCCHHHHHTTHHH
T ss_pred CCCCC-CH------HHHHHHHHHHHHHHHHHHhHHHhcCccEEEEECCCCCcHHHHHHHHHHHhC-CCCCcccHHHHHHH
Confidence 67865 32 34567889999999998 888999999999999999999999999999999 79999999999999
Q ss_pred HHHHHHHHHHHHHhhhccchhhHHHhhhhcCCCCCCCCCCCCCCCCCcceeccchhhHHhHHHHHhhh------hcCCcc
Q 003444 572 IQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDETNPVGSSDSTDGKTIYTIGPRLKAFSDWLLKTM------VSGNLE 645 (819)
Q Consensus 572 IqsNIi~sm~iLLea~e~fe~e~l~e~r~~~spde~~~~g~~~~~~~~~Iysi~~rlk~fsdwll~~~------~~g~ld 645 (819)
|+.|++++|+.||++|+.|+++. .++ .++...++++... +.|..+
T Consensus 73 i~~n~~~s~~~il~a~~~~~i~~----------------~~~-------------~~~~~~~~~~~~~~~~~~~~~g~~~ 123 (362)
T 1zcb_A 73 IYSNVIKGMRVLVDAREKLHIPW----------------GDN-------------KNQLHGDKLMAFDTRAPMAAQGMVE 123 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC----------------SSG-------------GGHHHHHHHHTSCSSSHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC----------------CCc-------------ccHHHHHHHHhhcccccccccccCc
Confidence 99999999999999999877542 111 1112223333221 112222
Q ss_pred ccCcccchhHHHHHHHHhcCHHHHHHHhcccchhhcccchhhhhhcccccccCCCCCCccceeeeecccccCCeeEEEEE
Q 003444 646 AIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSVASYFLERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFS 725 (819)
Q Consensus 646 ~~fp~~t~E~A~aI~eLWkDpgIQ~~y~RRnEfq~LpDSA~YFLdnIdRIaspDYvPTdqDILraR~kT~stGItE~eF~ 725 (819)
. ..+ .+++++|..||+||+||+||+||+||| |+|+|.|||++++||+.++|+||++|||++|.+| +||.+..|.
T Consensus 124 ~--~~~-~~~~~~i~~LW~d~~iq~~~~r~~e~~-l~ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T--~Gi~~~~~~ 197 (362)
T 1zcb_A 124 T--RVF-LQYLPAIRALWEDSGIQNAYDRRREFQ-LGESVKYFLDNLDKLGVPDYIPSQQDILLARRPT--KGIHEYDFE 197 (362)
T ss_dssp H--HHH-HHHHHHHHHHHHCHHHHHHHHTGGGSC-CCTTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCC--SSEEEEEEE
T ss_pred c--hhH-HHHHHHHHHHHCCHHHHHHHHhcchhh-hcccHHHHHHHHHHHhcCCCCCChhhhhhccCCc--cceEEEEee
Confidence 1 123 799999999999999999999999999 8999999999999999999999999999999998 699999998
Q ss_pred cCCCCCCCCccccccccccccEEEEEecccccccccccccccCCCCEEEEEEeCCCccccc-ccCCCCccchHHHHHHHH
Q 003444 726 FPRSASDDSVDTADQHDSLLRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFS-VDGNGSLMNKMMLSRKFF 804 (819)
Q Consensus 726 ~~~~~~~~~~D~ggqr~~~l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYDQ~l-ED~~G~~~NRM~ESL~LF 804 (819)
++. ++|++||+||| +++|++|.+||+++++||||+|+++|||++ ||+ ..|||++++.+|
T Consensus 198 ~~~----------------~~l~i~Dt~Gq-~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~---~~n~~~es~~~~ 257 (362)
T 1zcb_A 198 IKN----------------VPFKMVDVGGQ-RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDR---QTNRLTESLNIF 257 (362)
T ss_dssp ETT----------------EEEEEEEECC--------CTTSCTTCCEEEEEEETTCTTCEETTEE---EEEHHHHHHHHH
T ss_pred eCC----------------eEEEEEeccch-hhhhhhHHHHhCCCCEEEEEEECccccccccccc---cccHHHHHHHHH
Confidence 865 78999999999 899999999999999999999999999995 665 689999999999
Q ss_pred HHHhccccccCCCCC
Q 003444 805 ESIVTIQLLIRWNFF 819 (819)
Q Consensus 805 EsI~nnp~F~~t~f~ 819 (819)
++|++++||.++|+|
T Consensus 258 ~~i~~~~~~~~~piI 272 (362)
T 1zcb_A 258 ETIVNNRVFSNVSII 272 (362)
T ss_dssp HHHHTCGGGTTSEEE
T ss_pred HHHhcchhhCCCCEE
Confidence 999999999999875
No 5
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=100.00 E-value=4.1e-55 Score=470.67 Aligned_cols=230 Identities=27% Similarity=0.413 Sum_probs=201.6
Q ss_pred cceeeEEEeecCCCCchhHHHHHHHHhcCCCCCHHHhhhhHHHHHHHHHHHHHHHHhhhccchhhHHHhhhhcCCCCCCC
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDETN 608 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMKILy~p~GFS~eEr~~~K~iIqsNIi~sm~iLLea~e~fe~e~l~e~r~~~spde~~ 608 (819)
++++||||||+||||||||+|||||||+ +|||++|++.||++||.|++++|+.||++|+.++++.
T Consensus 3 ~~~~klLLLG~geSGKSTi~KQmkii~~-~gfs~~e~~~~~~~i~~N~~~~~~~li~~~~~l~i~~-------------- 67 (340)
T 4fid_A 3 AKPITVMLLGSGESGKSTIAKQLKILFG-GGFPEQERATHKSSICSNVVTCMRTLIEQSAILNHPM-------------- 67 (340)
T ss_dssp -CCEEEEEEECTTSSHHHHHHHHHHHTS-CCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCC--------------
T ss_pred CCcceEEEECCCCCcHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCC--------------
Confidence 6799999999999999999999999999 9999999999999999999999999999999887653
Q ss_pred CCCCCCCCCCcceeccchhhHHhHHHHHhhhhcCCccccCcccchhHHHHHHHHhcCHHHHHHHhcccchhhcccchhhh
Q 003444 609 PVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSVASYF 688 (819)
Q Consensus 609 ~~g~~~~~~~~~Iysi~~rlk~fsdwll~~~~~g~ld~~fp~~t~E~A~aI~eLWkDpgIQ~~y~RRnEfq~LpDSA~YF 688 (819)
.++.+.. .+ ++.. .. ...++++++++|.+||+||+||+||+||+||+ |+|+|.||
T Consensus 68 --~~~~~~~------------~~----~~~~---~~---~~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~-l~d~~~yf 122 (340)
T 4fid_A 68 --KYQPKSK------------EF----TTED---PV---TLPFSPELVGDVEALWADEGIQATYEESAKFQ-LPDCAKYL 122 (340)
T ss_dssp --SCCCCSG------------GG----SCCS---CC---CSSCCTTHHHHHHHHHHSHHHHHHHHTCTTSC-CCTTHHHH
T ss_pred --CChhhHH------------HH----hhcc---cC---CCCCCHHHHHHHHHHHcCHHHHHHHHhccccc-ccchhhhH
Confidence 1111110 00 0110 11 12355799999999999999999999999999 89999999
Q ss_pred hhcccccccCCCCCCccceeeeecccccCCeeEEEEEcCCCCCCCCccccccccccccEEEEEecccccccccccccccC
Q 003444 689 LERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRYQLIRVQARGLGENCKWLEMFE 768 (819)
Q Consensus 689 LdnIdRIaspDYvPTdqDILraR~kT~stGItE~eF~~~~~~~~~~~D~ggqr~~~l~frLiDVGGQgrsERkKWi~~FE 768 (819)
|++++||+.++|.||++|||++|++| +||.++.|.++. +++++||+||| +++|++|.+||+
T Consensus 123 l~~l~Ri~~~~Y~PT~~Dil~~~~~T--iGi~~~~~~~~~----------------v~l~iwDtaGQ-e~~R~~w~~yy~ 183 (340)
T 4fid_A 123 FENVKRIAMEDYVPTEEDLIHNRTKT--TGIHEYDFVVKD----------------IPFHLIDVGGQ-RSERKXWVSFFS 183 (340)
T ss_dssp HHTHHHHSSTTCCCCHHHHHHSCCCC--CSCEEEEEESSS----------------CEEEEEECCSC-HHHHHHHHTTSC
T ss_pred HHHHHHHhcccCCccccceeecccce--eeeEEEEEEeee----------------eeeccccCCCc-ccccccHHHHhc
Confidence 99999999999999999999999999 699999999875 79999999999 899999999999
Q ss_pred CCCEEEEEEeCCCcccccccCCCCccchHHHHHHHHHHHhccccccCCCCC
Q 003444 769 DIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTIQLLIRWNFF 819 (819)
Q Consensus 769 dVtaVIFvVSLSdYDQ~lED~~G~~~NRM~ESL~LFEsI~nnp~F~~t~f~ 819 (819)
++++||||+|+++|||++.++. ..|||++++.+|+++++++||.++||+
T Consensus 184 ~a~~iIfV~diS~ydq~l~e~~--~~nr~~es~~~~~~i~~~~~~~~~pii 232 (340)
T 4fid_A 184 DVDCAIFVTSLAEYDMKLYEDG--NTSRLTESIAVFKDIMTNEFLKGAVKL 232 (340)
T ss_dssp SCSEEEEEEEGGGTTCBCC--C--CSBHHHHHHHHHHHHHHCGGGTTSEEE
T ss_pred cCCEEEEEEECCcccccccccc--ccchHHHHHHHHHHHhhhhccCCCeEE
Confidence 9999999999999999964433 689999999999999999999999874
No 6
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=100.00 E-value=8e-52 Score=446.27 Aligned_cols=248 Identities=31% Similarity=0.533 Sum_probs=211.0
Q ss_pred cceeeEEEeecCCCCchhHHHHHHHHhcCCCCCHHHhhhhHHHHHHHHHHHHHHHHhhhccchhhHHHhhhhcCCCCCCC
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIKLKIQSNAYGYLGILLEGRERFEEEILGEKRKKQSSDETN 608 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMKILy~p~GFS~eEr~~~K~iIqsNIi~sm~iLLea~e~fe~e~l~e~r~~~spde~~ 608 (819)
.+++||||||+||||||||+|||||+|. .||+++|++.|+.+|+.|++++|+.||++|+.|+++..
T Consensus 7 ~~~~k~lllG~~~sGKsT~~kq~~~~~~-~g~~~~e~~~~~~~i~~Ni~~~~~~ll~a~~~l~~~~~------------- 72 (354)
T 2xtz_A 7 IHIRKLLLLGAGESGKSTIFKQIKLLFQ-TGFDEGELKSYVPVIHANVYQTIKLLHDGTKEFAQNET------------- 72 (354)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHHHS-CCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCS-------------
T ss_pred CCceeEEEECCCCCcHHHHHHHHHHHhc-CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-------------
Confidence 4689999999999999999999999999 89999999999999999999999999999988765420
Q ss_pred CCCCCCCCCCcceeccchhhHHhHHHHHhhhhcCCccccCcccchhHHHHHHHHhcCHHHHHHHhcccchhhcccchhhh
Q 003444 609 PVGSSDSTDGKTIYTIGPRLKAFSDWLLKTMVSGNLEAIFPAATREYSPLVEELWKDAAIQATYSRRSELEMLSSVASYF 688 (819)
Q Consensus 609 ~~g~~~~~~~~~Iysi~~rlk~fsdwll~~~~~g~ld~~fp~~t~E~A~aI~eLWkDpgIQ~~y~RRnEfq~LpDSA~YF 688 (819)
. ...|.+.+.++++++|+.......+ ++.++++++++|.+||+||+||+||+||+||+ |+|+|.||
T Consensus 73 ---~------~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~LW~D~~vq~~~~r~~e~~-l~d~~~yf 138 (354)
T 2xtz_A 73 ---D------SAKYMLSSESIAIGEKLSEIGGRLD----YPRLTKDIAEGIETLWKDPAIQETCARGNELQ-VPDCTKYL 138 (354)
T ss_dssp ---S------CCTTCCCHHHHHHHHHHHHHHHHCS----SCCCCHHHHHHHHHHTTCHHHHHHHTTGGGTT-CCTTHHHH
T ss_pred ---c------cccccCChhHHHHHHHHHhcccccc----cccCCHHHHHHHHHHHCCHHHHHHHHhcchhh-hhccHHHH
Confidence 0 0113334555667777665432211 24567899999999999999999999999998 89999999
Q ss_pred hhcccccccCCCCCCccceeeeecccccCCeeEEEEEcCCCCCCCCccccccccccccEEEEEecccccccccccccccC
Q 003444 689 LERVVDISRTDYEPSDLDILYAEGVTSSNGLACVDFSFPRSASDDSVDTADQHDSLLRYQLIRVQARGLGENCKWLEMFE 768 (819)
Q Consensus 689 LdnIdRIaspDYvPTdqDILraR~kT~stGItE~eF~~~~~~~~~~~D~ggqr~~~l~frLiDVGGQgrsERkKWi~~FE 768 (819)
|++++||+.++|+||.+||+++|++| +||.|+.|.++. ++. ...+++++||+||| ..+|++|.+||+
T Consensus 139 l~~~~ri~~~~Y~PT~~D~~~~r~~T--~Gi~e~~f~~~~---------~~~-~~~v~l~iwDtaGQ-e~~r~~~~~y~~ 205 (354)
T 2xtz_A 139 MENLKRLSDINYIPTKEDVLYARVRT--TGVVEIQFSPVG---------ENK-KSGEVYRLFDVGGQ-RNERRKWIHLFE 205 (354)
T ss_dssp HTSHHHHHSTTCCCCHHHHHHCCCCC--CSEEEEEECCCC---------E-------EEEEEEECCS-TTGGGGTGGGCT
T ss_pred HHHHHHHhcCCCCCCchheeeecccc--cceeeEEEEecc---------Ccc-ccceeeEEEECCCc-hhhhHHHHHHhC
Confidence 99999999999999999999999988 699999998853 000 01379999999999 899999999999
Q ss_pred CCCEEEEEEeCCCcccccccCCCCccchHHHHHHHHHHHhccccccCCCCC
Q 003444 769 DIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTIQLLIRWNFF 819 (819)
Q Consensus 769 dVtaVIFvVSLSdYDQ~lED~~G~~~NRM~ESL~LFEsI~nnp~F~~t~f~ 819 (819)
++++||||+|+++|||++.++. ..|+|++++.+|++|+++++|.++|+|
T Consensus 206 ~~~~iI~v~dis~ydq~l~e~~--~~~s~~~~~~~~~~i~~~~~~~~~pii 254 (354)
T 2xtz_A 206 GVTAVIFCAAISEYDQTLFEDE--QKNRMMETKELFDWVLKQPCFEKTSFM 254 (354)
T ss_dssp TEEEEEEEEEGGGTTCBCSSCT--TSBHHHHHHHHHHHHHTCGGGSSCEEE
T ss_pred CCCEEEEEEECccccccccccc--chhHHHHHHHHHHHHHhccccCCCeEE
Confidence 9999999999999999964443 589999999999999999999998874
No 7
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.25 E-value=0.00061 Score=61.87 Aligned_cols=37 Identities=0% Similarity=-0.116 Sum_probs=31.9
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++-
T Consensus 51 ~~~~l~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 87 (167)
T 1c1y_A 51 CMLEILDTAGT-EQFTAMRDLYMKNGQGFALVYSITAQ 87 (167)
T ss_dssp EEEEEEEECSS-CSSTTHHHHHHHHCSEEEEEEETTCH
T ss_pred EEEEEEECCCh-HHHHHHHHHHhccCCEEEEEEECCCH
Confidence 57889999998 56677888899999999999999863
No 8
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.48 E-value=0.0006 Score=70.25 Aligned_cols=30 Identities=10% Similarity=0.065 Sum_probs=20.4
Q ss_pred EecccccccccccccccCCCCEEEEEEeCCC
Q 003444 751 RVQARGLGENCKWLEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 751 DVGGQgrsERkKWi~~FEdVtaVIFvVSLSd 781 (819)
++||| .+-|.-|.|||+++++||||||.+|
T Consensus 108 ~~GGQ-~klRplWr~Yy~~TdglIfVVDSsD 137 (227)
T 3l82_B 108 QQGSR-YSVIPQIQKVCEVVDGFIYVANAEA 137 (227)
T ss_dssp ----------CCHHHHHHHCSEEEEEEECBT
T ss_pred ccCcH-HHHHHHHHHHhcCCCEEEEEecccc
Confidence 67898 7899999999999999999999996
No 9
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.46 E-value=0.0098 Score=54.19 Aligned_cols=60 Identities=15% Similarity=0.244 Sum_probs=44.5
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCcccccccCCCCccchHHHHHHHHHHHhccccccCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTIQLLIRWN 817 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYDQ~lED~~G~~~NRM~ESL~LFEsI~nnp~F~~t~ 817 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++. ..+.+....+..++.+....+.|
T Consensus 51 ~~~~~~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~------------~s~~~~~~~~~~~~~~~~~~~~p 110 (171)
T 1upt_A 51 LKFQVWDLGGL-TSIRPYWRCYYSNTDAVIYVVDSCDR------------DRIGISKSELVAMLEEEELRKAI 110 (171)
T ss_dssp EEEEEEEECCC-GGGGGGGGGGCTTCSEEEEEEETTCC------------TTHHHHHHHHHHHHTCGGGTTCE
T ss_pred EEEEEEECCCC-hhhhHHHHHHhccCCEEEEEEECCCH------------HHHHHHHHHHHHHHhchhhCCCE
Confidence 68999999998 66788899999999999999998853 23445555666666554333433
No 10
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.29 E-value=0.012 Score=55.31 Aligned_cols=60 Identities=17% Similarity=0.303 Sum_probs=45.1
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCcccccccCCCCccchHHHHHHHHHHHhccccccCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTIQLLIRWN 817 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYDQ~lED~~G~~~NRM~ESL~LFEsI~nnp~F~~t~ 817 (819)
..+++||++|+ ...+..|.+++.+++++|||+|+++. +++.+....+..++......+.|
T Consensus 66 ~~~~~~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~------------~s~~~~~~~~~~~~~~~~~~~~p 125 (189)
T 2x77_A 66 ISFEVWDLGGQ-TGVRPYWRCYFSDTDAVIYVVDSTDR------------DRMGVAKHELYALLDEDELRKSL 125 (189)
T ss_dssp EEEEEEEECCS-SSSCCCCSSSSTTCCEEEEEEETTCC------------TTHHHHHHHHHHHHTCSTTTTCE
T ss_pred EEEEEEECCCC-HhHHHHHHHHhhcCCEEEEEEeCCCH------------HHHHHHHHHHHHHHhhhhcCCCe
Confidence 68999999998 67788899999999999999998852 34555556666666554444444
No 11
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.14 E-value=0.0094 Score=54.08 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=44.8
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCcccccccCCCCccchHHHHHHHHHHHhccccccCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTIQLLIRWN 817 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYDQ~lED~~G~~~NRM~ESL~LFEsI~nnp~F~~t~ 817 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++. +.+.+....+..+.......+.|
T Consensus 44 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~------------~s~~~~~~~~~~~~~~~~~~~~p 103 (164)
T 1r8s_A 44 ISFTVWDVGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDR------------ERVNEAREELMRMLAEDELRDAV 103 (164)
T ss_dssp CEEEEEECCCC-GGGHHHHHHHTTTCSEEEEEEETTCG------------GGHHHHHHHHHHHHTCGGGTTCE
T ss_pred EEEEEEEcCCC-hhhHHHHHHHhccCCEEEEEEECCCH------------HHHHHHHHHHHHHHhchhhcCCe
Confidence 68999999998 66777899999999999999998852 33455556666666654444444
No 12
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.09 E-value=0.014 Score=54.74 Aligned_cols=54 Identities=13% Similarity=0.322 Sum_probs=41.7
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCcccccccCCCCccchHHHHHHHHHHHhccc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTIQ 811 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYDQ~lED~~G~~~NRM~ESL~LFEsI~nnp 811 (819)
..+++||++|+ ...+..|..++.++++||||+|+++- ..+.+....+..+....
T Consensus 65 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~------------~s~~~~~~~~~~~~~~~ 118 (181)
T 2h17_A 65 TRFLMWDIGGQ-ESLRSSWNTYYTNTEFVIVVVDSTDR------------ERISVTREELYKMLAHE 118 (181)
T ss_dssp EEEEEEEESSS-GGGTCGGGGGGTTCCEEEEEEETTCT------------TTHHHHHHHHHHHHTCG
T ss_pred EEEEEEECCCC-HhHHHHHHHHhccCCEEEEEEECCCH------------HHHHHHHHHHHHHHhCh
Confidence 68999999998 67788899999999999999998852 33445555566665543
No 13
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.08 E-value=0.016 Score=54.55 Aligned_cols=56 Identities=13% Similarity=0.323 Sum_probs=42.5
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCcccccccCCCCccchHHHHHHHHHHHhccccc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTIQLL 813 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYDQ~lED~~G~~~NRM~ESL~LFEsI~nnp~F 813 (819)
..+.+||++|+ ...+..|..++.++++||||+|+++- +.+.+....+..+.....+
T Consensus 67 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~------------~s~~~~~~~~~~~~~~~~~ 122 (190)
T 2h57_A 67 LSFTVFDMSGQ-GRYRNLWEHYYKEGQAIIFVIDSSDR------------LRMVVAKEELDTLLNHPDI 122 (190)
T ss_dssp CEEEEEEECCS-TTTGGGGGGGGGGCSEEEEEEETTCH------------HHHHHHHHHHHHHHHSTTT
T ss_pred EEEEEEECCCC-HHHHHHHHHHHhcCCEEEEEEECCCH------------HHHHHHHHHHHHHHhChhh
Confidence 58999999998 67788899999999999999998852 3344555556666554433
No 14
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.05 E-value=0.014 Score=64.38 Aligned_cols=61 Identities=13% Similarity=0.203 Sum_probs=50.0
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCcccccccCCCCccchHHHHHHHHHHHhccccccCCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTIQLLIRWNF 818 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYDQ~lED~~G~~~NRM~ESL~LFEsI~nnp~F~~t~f 818 (819)
..+++||++|+ ...+..|..+|+++++||||+|+++ ..++.+....+..++++..+.+.|+
T Consensus 366 ~~~~l~Dt~G~-~~~~~~~~~~~~~ad~~i~V~D~~~------------~~s~~~~~~~~~~~~~~~~~~~~p~ 426 (497)
T 3lvq_E 366 VKFNVWDVGGQ-DKIRPLWRHYYTGTQGLIFVVDCAD------------RDRIDEARQELHRIINDREMRDAII 426 (497)
T ss_dssp CEEEEEEECCC-GGGSGGGGGGGTTCCEEEEEEETTC------------GGGHHHHHHHHHHHHTSGGGTTCEE
T ss_pred EEEEEEECCCc-HHHHHHHHHHhccCCEEEEEEECcc------------hhHHHHHHHHHHHHhhhhhcCCCcE
Confidence 68999999998 7788889999999999999999985 2456677777788877766666654
No 15
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.00 E-value=0.015 Score=54.26 Aligned_cols=60 Identities=17% Similarity=0.268 Sum_probs=45.0
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCcccccccCCCCccchHHHHHHHHHHHhccccccCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTIQLLIRWN 817 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYDQ~lED~~G~~~NRM~ESL~LFEsI~nnp~F~~t~ 817 (819)
.++++||++|+ ...+..|..++.+++++|||+|+++- ..+.+....+..++.+....+.|
T Consensus 62 ~~~~~~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~------------~s~~~~~~~~~~~~~~~~~~~~p 121 (186)
T 1ksh_A 62 FKLNIWDVGGQ-KSLRSYWRNYFESTDGLIWVVDSADR------------QRMQDCQRELQSLLVEERLAGAT 121 (186)
T ss_dssp EEEEEEEECCS-HHHHTTGGGGCTTCSEEEEEEETTCG------------GGHHHHHHHHHHHHTCGGGTTCE
T ss_pred EEEEEEECCCC-HhHHHHHHHHhcCCCEEEEEEECcCH------------HHHHHHHHHHHHHHhChhcCCCc
Confidence 68999999998 66778899999999999999998852 34555566666666654444443
No 16
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.94 E-value=0.019 Score=53.97 Aligned_cols=53 Identities=15% Similarity=0.318 Sum_probs=42.3
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCcccccccCCCCccchHHHHHHHHHHHhcc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTI 810 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYDQ~lED~~G~~~NRM~ESL~LFEsI~nn 810 (819)
..+++||++|+ ...+..|..++.++++||||+|+++- ..+.+....+..+..+
T Consensus 63 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~------------~s~~~~~~~~~~~~~~ 115 (199)
T 4bas_A 63 VAFTVFDMGGA-KKFRGLWETYYDNIDAVIFVVDSSDH------------LRLCVVKSEIQAMLKH 115 (199)
T ss_dssp EEEEEEEECCS-GGGGGGGGGGCTTCSEEEEEEETTCG------------GGHHHHHHHHHHHHTS
T ss_pred EEEEEEECCCC-HhHHHHHHHHHhcCCEEEEEEECCcH------------HHHHHHHHHHHHHHhC
Confidence 68999999998 67788899999999999999999852 3345555666666655
No 17
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.87 E-value=0.013 Score=55.27 Aligned_cols=60 Identities=10% Similarity=0.219 Sum_probs=43.1
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCcccccccCCCCccchHHHHHHHHHHHhccccccCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTIQLLIRWN 817 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYDQ~lED~~G~~~NRM~ESL~LFEsI~nnp~F~~t~ 817 (819)
..+++||++|+ ...+..|..+|.+++++|||+|+++- .++.+....+..++......+.|
T Consensus 60 ~~l~i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~------------~s~~~~~~~~~~~~~~~~~~~~p 119 (181)
T 1fzq_A 60 FKLNVWDIGGQ-RKIRPYWRSYFENTDILIYVIDSADR------------KRFEETGQELTELLEEEKLSCVP 119 (181)
T ss_dssp EEEEEEECSSC-GGGHHHHHHHHTTCSEEEEEEETTCG------------GGHHHHHHHHHHHTTCGGGTTCC
T ss_pred EEEEEEECCCC-HHHHHHHHHHhCCCCEEEEEEECcCH------------HHHHHHHHHHHHHHhChhhcCCC
Confidence 68999999998 66778899999999999999998852 34445555555555443333333
No 18
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.86 E-value=0.019 Score=55.25 Aligned_cols=60 Identities=13% Similarity=0.317 Sum_probs=42.1
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCcccccccCCCCccchHHHHHHHHHHHhccccccCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTIQLLIRWN 817 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYDQ~lED~~G~~~NRM~ESL~LFEsI~nnp~F~~t~ 817 (819)
..+++||++|+ ...+..|..+|.+++++|||+|+++- .++.+....+..+.......+.|
T Consensus 69 ~~l~i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~------------~s~~~~~~~~~~~~~~~~~~~~p 128 (198)
T 1f6b_A 69 MTFTTFDLGGH-IQARRVWKNYLPAINGIVFLVDCADH------------ERLLESKEELDSLMTDETIANVP 128 (198)
T ss_dssp EEEEEEEECC-----CCGGGGGGGGCSEEEEEEETTCG------------GGHHHHHHHHHHHHTCGGGTTSC
T ss_pred EEEEEEECCCc-HhhHHHHHHHHhcCCEEEEEEECCCH------------HHHHHHHHHHHHHHhCcccCCCc
Confidence 57899999998 66788899999999999999998842 34555666666666554334444
No 19
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.84 E-value=0.027 Score=53.66 Aligned_cols=60 Identities=13% Similarity=0.322 Sum_probs=44.7
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCcccccccCCCCccchHHHHHHHHHHHhccccccCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTIQLLIRWN 817 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYDQ~lED~~G~~~NRM~ESL~LFEsI~nnp~F~~t~ 817 (819)
.++++||++|+ ...+..|.++|.+++++|||+|+++- .++.+....+..+.......+.|
T Consensus 67 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~------------~s~~~~~~~~~~~~~~~~~~~~p 126 (190)
T 1m2o_B 67 IKFTTFDLGGH-IQARRLWKDYFPEVNGIVFLVDAADP------------ERFDEARVELDALFNIAELKDVP 126 (190)
T ss_dssp EEEEEEECCCS-GGGTTSGGGGCTTCCEEEEEEETTCG------------GGHHHHHHHHHHHHTCGGGTTCC
T ss_pred EEEEEEECCCC-HHHHHHHHHHHhcCCEEEEEEECCCh------------HHHHHHHHHHHHHHcchhhcCCC
Confidence 57899999998 66788899999999999999999852 34555556666666544334444
No 20
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=95.78 E-value=0.0012 Score=70.75 Aligned_cols=32 Identities=9% Similarity=0.043 Sum_probs=25.9
Q ss_pred EecccccccccccccccCCCCEEEEEEeCCCcc
Q 003444 751 RVQARGLGENCKWLEMFEDIGMVIFCVALSDYD 783 (819)
Q Consensus 751 DVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYD 783 (819)
++||| .+-|.-|.|||+++++||||||.+|-+
T Consensus 193 ~~GGQ-~~lRplWr~Yy~~tdglIfVVDSsDre 224 (312)
T 3l2o_B 193 QQGSR-YSVIPQIQKVCEVVDGFIYVANAEAHK 224 (312)
T ss_dssp ----C-CCCCHHHHHHHHHCSEEEECCBCBTTC
T ss_pred CCCCH-HHHHHHHHHHhcCCCEEEEEecCCcHh
Confidence 58999 789999999999999999999999744
No 21
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.76 E-value=0.014 Score=54.83 Aligned_cols=54 Identities=13% Similarity=0.322 Sum_probs=38.5
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCcccccccCCCCccchHHHHHHHHHHHhccc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTIQ 811 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYDQ~lED~~G~~~NRM~ESL~LFEsI~nnp 811 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++- ..+.+....+..+..+.
T Consensus 60 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~------------~s~~~~~~~~~~~~~~~ 113 (187)
T 1zj6_A 60 TRFLMWDIGGQ-ESLRSSWNTYYTNTEFVIVVVDSTDR------------ERISVTREELYKMLAHE 113 (187)
T ss_dssp EEEEEEECCC-----CGGGHHHHTTCCEEEEEEETTCT------------TTHHHHHHHHHHHHTSG
T ss_pred EEEEEEECCCC-HhHHHHHHHHhcCCCEEEEEEeCCCH------------HHHHHHHHHHHHHHhch
Confidence 68999999998 66788899999999999999998852 23445555556665543
No 22
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.72 E-value=0.022 Score=52.71 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=38.5
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCcccccccCCCCccchHHHHHHHHHHHhccc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTIQ 811 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYDQ~lED~~G~~~NRM~ESL~LFEsI~nnp 811 (819)
..+.+||++|+ ...+..|..++.+++++|||+|.++- ..+.+....+..+.++.
T Consensus 62 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~------------~s~~~~~~~~~~~~~~~ 115 (183)
T 1moz_A 62 LKLNVWDLGGQ-TSIRPYWRCYYADTAAVIFVVDSTDK------------DRMSTASKELHLMLQEE 115 (183)
T ss_dssp EEEEEEEEC-----CCTTGGGTTTTEEEEEEEEETTCT------------TTHHHHHHHHHHHTTSS
T ss_pred EEEEEEECCCC-HhHHHHHHHHhccCCEEEEEEECCCH------------HHHHHHHHHHHHHHcCh
Confidence 68999999998 66788899999999999999998852 34445555566665543
No 23
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.35 E-value=0.027 Score=53.19 Aligned_cols=60 Identities=12% Similarity=0.215 Sum_probs=43.0
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCcccccccCCCCccchHHHHHHHHHHHhccccccCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTIQLLIRWN 817 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYDQ~lED~~G~~~NRM~ESL~LFEsI~nnp~F~~t~ 817 (819)
..+++||++|+ ...+..|..++.++++||||+|+++. ..+.+....+..+.......+.|
T Consensus 67 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~------------~s~~~~~~~~~~~~~~~~~~~~p 126 (188)
T 1zd9_A 67 VTIKLWDIGGQ-PRFRSMWERYCRGVSAIVYMVDAADQ------------EKIEASKNELHNLLDKPQLQGIP 126 (188)
T ss_dssp EEEEEEEECCS-HHHHTTHHHHHTTCSEEEEEEETTCG------------GGHHHHHHHHHHHHTCGGGTTCC
T ss_pred EEEEEEECCCC-HhHHHHHHHHHccCCEEEEEEECCCH------------HHHHHHHHHHHHHHhCcccCCCC
Confidence 68999999998 56677899999999999999998852 23445555555555543333333
No 24
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.12 E-value=0.028 Score=53.62 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=40.3
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCcccccccCCCCccchHHHHHHHHHHHhccccccCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTIQLLIRWN 817 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYDQ~lED~~G~~~NRM~ESL~LFEsI~nnp~F~~t~ 817 (819)
..+.+||++|+ ...+..|..++.++++||||+|+++. ..+.+....+..+.......+.|
T Consensus 73 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~iilv~D~~~~------------~s~~~~~~~l~~~~~~~~~~~~p 132 (192)
T 2b6h_A 73 ICFTVWDVGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDR------------ERVQESADELQKMLQEDELRDAV 132 (192)
T ss_dssp EEEEEEECC------CTTHHHHHHTCCEEEEEEETTCG------------GGHHHHHHHHHHHHTCGGGTTCE
T ss_pred EEEEEEECCCC-HhHHHHHHHHhccCCEEEEEEECCCH------------HHHHHHHHHHHHHhcccccCCCe
Confidence 68999999998 66778898999999999999999853 23445555666666544444443
No 25
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.07 E-value=0.018 Score=53.59 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=32.8
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSd 781 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++
T Consensus 74 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~D~~~ 109 (198)
T 3t1o_A 74 TRFHLYTVPGQ-VFYNASRKLILRGVDGIVFVADSAP 109 (198)
T ss_dssp EEEEEEECCSC-CSCSHHHHHHTTTCCEEEEEEECCG
T ss_pred eEEEEEeCCCh-HHHHHHHHHHHhcCCEEEEEEECCc
Confidence 78999999998 6778889999999999999999983
No 26
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.78 E-value=0.029 Score=50.71 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.0
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
.+.+|++++|..++||||+++++.
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHH
Confidence 457999999999999999999864
No 27
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.45 E-value=0.038 Score=49.41 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=19.8
Q ss_pred eeeEEEeecCCCCchhHHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMK 552 (819)
.+|++++|.+++||||+++++.
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHH
Confidence 5799999999999999998763
No 28
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.41 E-value=0.037 Score=50.75 Aligned_cols=25 Identities=20% Similarity=0.574 Sum_probs=21.0
Q ss_pred hcceeeEEEeecCCCCchhHHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
.++.+||+++|..++||||+++++.
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHH
T ss_pred cCceEEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999998763
No 29
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.24 E-value=0.039 Score=50.11 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.2
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
...+|++++|..++||||+++++.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHH
Confidence 457999999999999999998753
No 30
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.08 E-value=0.039 Score=50.01 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.9
Q ss_pred cceeeEEEeecCCCCchhHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQM 551 (819)
.+.+|++++|..++||||+++++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l 26 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRF 26 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHH
Confidence 45799999999999999999986
No 31
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.07 E-value=0.039 Score=52.70 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.8
Q ss_pred ceeeEEEeecCCCCchhHHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMK 552 (819)
..+|++|+|..++||||+++++.
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~ 50 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFT 50 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHh
Confidence 46899999999999999999874
No 32
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.07 E-value=0.071 Score=49.23 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=32.6
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++-
T Consensus 70 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 106 (195)
T 3bc1_A 70 IHLQLWDTAGL-ERFRSLTTAFFRDAMGFLLLFDLTNE 106 (195)
T ss_dssp EEEEEEEECCS-GGGHHHHHHTTTTCSEEEEEEETTCH
T ss_pred EEEEEEeCCCc-HHHHHHHHHHHcCCCEEEEEEECCCH
Confidence 57899999998 66778899999999999999998863
No 33
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.06 E-value=0.044 Score=51.94 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=21.1
Q ss_pred hHHHhcceeeEEEeecCCCCchhHHHHHH
Q 003444 524 DYIERRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 524 dk~~~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
+.....+.+||+|+|..++|||||++++.
T Consensus 14 ~~~~~~~~~ki~vvG~~~vGKTsLi~~l~ 42 (187)
T 3c5c_A 14 LYFQGPLEVNLAILGRRGAGKSALTVKFL 42 (187)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHH
T ss_pred HHhCCCceEEEEEECCCCCcHHHHHHHHH
Confidence 34455678999999999999999998763
No 34
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.02 E-value=0.21 Score=46.11 Aligned_cols=36 Identities=14% Similarity=0.028 Sum_probs=32.1
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSd 781 (819)
+.+++||++|+ ...+..|..++.+++++|||+|+++
T Consensus 54 ~~~~l~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~ 89 (181)
T 3t5g_A 54 YHLQLVDTAGQ-DEYSIFPQTYSIDINGYILVYSVTS 89 (181)
T ss_dssp EEEEEEECCCC-CTTCCCCGGGTTTCSEEEEEEETTC
T ss_pred EEEEEEeCCCc-hhhhHHHHHHHhcCCEEEEEEECCC
Confidence 67899999998 5667789999999999999999986
No 35
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=92.99 E-value=0.11 Score=55.02 Aligned_cols=60 Identities=15% Similarity=0.198 Sum_probs=39.6
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCcccccccCCCCccchHHHHHHHHHHHhccccccCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTIQLLIRWN 817 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYDQ~lED~~G~~~NRM~ESL~LFEsI~nnp~F~~t~ 817 (819)
..+++||++|+ ...+..|..++.++++||||+|+++.+ .+.+....+..++......+.|
T Consensus 209 ~~l~i~Dt~G~-~~~~~~~~~~~~~ad~vilV~D~~~~~------------s~~~~~~~~~~~~~~~~~~~~p 268 (329)
T 3o47_A 209 ISFTVWDVGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRE------------RVNEAREELMRMLAEDELRDAV 268 (329)
T ss_dssp EEEEEEECC------CCSHHHHHTTEEEEEEEEETTCSS------------SHHHHHHHHHHHHTCGGGTTCE
T ss_pred EEEEEEECCCC-HhHHHHHHHHhccCCEEEEEEECCchH------------HHHHHHHHHHHHHhhhccCCCe
Confidence 68999999998 677788999999999999999998532 3344445555555544444443
No 36
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.96 E-value=0.041 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.4
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
.+.+||+++|..++||||+++++.
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~ 36 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFT 36 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHH
Confidence 457999999999999999999864
No 37
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.93 E-value=0.049 Score=48.97 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.6
Q ss_pred ceeeEEEeecCCCCchhHHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMK 552 (819)
+.+|++++|..++||||+++++.
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999998864
No 38
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.92 E-value=0.046 Score=49.59 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.5
Q ss_pred eeeEEEeecCCCCchhHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQM 551 (819)
.+|++|+|..++||||+++++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l 22 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIF 22 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHH
Confidence 589999999999999999876
No 39
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.91 E-value=0.049 Score=49.30 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.6
Q ss_pred ceeeEEEeecCCCCchhHHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMK 552 (819)
+.+||+++|..++||||+++++.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999999864
No 40
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.83 E-value=0.049 Score=49.17 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.7
Q ss_pred cceeeEEEeecCCCCchhHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQM 551 (819)
.+.+|++++|..++||||+++++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l 26 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRF 26 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHH
Confidence 35789999999999999999876
No 41
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.83 E-value=0.049 Score=50.16 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.3
Q ss_pred hcceeeEEEeecCCCCchhHHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
....+||+++|..++||||+++++.
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~ 33 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFV 33 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHH
T ss_pred CccceEEEEECcCCCCHHHHHHHHH
Confidence 3557999999999999999998763
No 42
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.83 E-value=0.049 Score=49.16 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.0
Q ss_pred ceeeEEEeecCCCCchhHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQM 551 (819)
+.+|++++|..++||||+++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l 23 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRF 23 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHH
Confidence 3589999999999999999976
No 43
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.76 E-value=0.049 Score=49.53 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=21.5
Q ss_pred hcceeeEEEeecCCCCchhHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
.++.+|++++|..++||||+++++
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l 27 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRL 27 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHH
Confidence 346789999999999999999987
No 44
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.75 E-value=0.045 Score=51.58 Aligned_cols=22 Identities=41% Similarity=0.685 Sum_probs=19.4
Q ss_pred eeeEEEeecCCCCchhHHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMK 552 (819)
.+|++|+|.+++|||||++++.
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 5799999999999999999763
No 45
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.74 E-value=0.047 Score=50.13 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=21.4
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
.+.+|++++|..++||||+++++.
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~ 27 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFA 27 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEEECcCCCCHHHHHHHHH
Confidence 457999999999999999999864
No 46
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.71 E-value=0.053 Score=50.50 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.7
Q ss_pred ceeeEEEeecCCCCchhHHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMK 552 (819)
+..|++|+|..++||||+++++-
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999999873
No 47
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.69 E-value=0.052 Score=51.98 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=22.0
Q ss_pred HHhcceeeEEEeecCCCCchhHHHHH
Q 003444 526 IERRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 526 ~~~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
......+||+|+|..++|||||++++
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l 45 (200)
T 2o52_A 20 IWSDFLFKFLVIGSAGTGKSCLLHQF 45 (200)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHH
T ss_pred cccCcceEEEEECcCCCCHHHHHHHH
Confidence 44567899999999999999999986
No 48
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.68 E-value=0.055 Score=48.54 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.2
Q ss_pred ceeeEEEeecCCCCchhHHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMK 552 (819)
+.+|++++|..++||||++.++.
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 36899999999999999998763
No 49
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.65 E-value=0.051 Score=51.83 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.7
Q ss_pred ceeeEEEeecCCCCchhHHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMK 552 (819)
..+|++|+|..++||||+++++-
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~ 26 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFT 26 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHh
Confidence 36899999999999999999874
No 50
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.60 E-value=0.05 Score=50.41 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=21.0
Q ss_pred cceeeEEEeecCCCCchhHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQM 551 (819)
.+.+||+|+|..++||||+++++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l 30 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQF 30 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHH
Confidence 45799999999999999999986
No 51
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.55 E-value=0.058 Score=49.07 Aligned_cols=21 Identities=43% Similarity=0.545 Sum_probs=19.7
Q ss_pred eeeEEEeecCCCCchhHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQM 551 (819)
.+|++++|..++||||+++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l 22 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTF 22 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHH
Confidence 589999999999999999986
No 52
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.50 E-value=0.06 Score=49.14 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.6
Q ss_pred ceeeEEEeecCCCCchhHHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMK 552 (819)
..+|++|+|..++|||||++++.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEEECCCCccHHHHHHHHh
Confidence 56899999999999999998763
No 53
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.46 E-value=0.057 Score=49.44 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=21.4
Q ss_pred hcceeeEEEeecCCCCchhHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
....+||+++|..++||||+++++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l 29 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRF 29 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHH
T ss_pred cCcceEEEEECCCCCCHHHHHHHH
Confidence 456799999999999999999875
No 54
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.38 E-value=0.064 Score=50.26 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=20.8
Q ss_pred hcceeeEEEeecCCCCchhHHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
....+|++++|..++|||||++++.
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~ 28 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFA 28 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHH
T ss_pred CceEEEEEEECCCCCCHHHHHHHHh
Confidence 4567999999999999999999753
No 55
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.35 E-value=0.055 Score=49.63 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.9
Q ss_pred cceeeEEEeecCCCCchhHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQM 551 (819)
...+|++++|..++||||+++++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l 27 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRY 27 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHH
T ss_pred cceeEEEEECCCCCCHHHHHHHH
Confidence 45789999999999999999976
No 56
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.34 E-value=0.067 Score=48.41 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.7
Q ss_pred ceeeEEEeecCCCCchhHHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMK 552 (819)
..+|++++|..++||||++.++.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHH
T ss_pred CceEEEEECcCCCCHHHHHHHHH
Confidence 46899999999999999999874
No 57
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.33 E-value=0.067 Score=48.92 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.5
Q ss_pred ceeeEEEeecCCCCchhHHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMK 552 (819)
+.+|++++|..++||||+++++.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~ 30 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFI 30 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999998763
No 58
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.30 E-value=0.063 Score=49.62 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=21.4
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
.+.+||+++|..++||||+++++.
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999999874
No 59
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.28 E-value=0.055 Score=50.10 Aligned_cols=37 Identities=5% Similarity=0.087 Sum_probs=32.0
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+.+||++|+ ...+..|..++..++++|||+|+++.
T Consensus 93 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~ 129 (208)
T 3clv_A 93 IKFDIWDTAGQ-ERYASIVPLYYRGATCAIVVFDISNS 129 (208)
T ss_dssp EEEEEEECTTG-GGCTTTHHHHHTTCSEEEEEEETTCH
T ss_pred eEEEEEECCCc-HHHHHHHHHHhcCCCEEEEEEECCCH
Confidence 67899999998 56677788899999999999998864
No 60
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.28 E-value=0.062 Score=50.22 Aligned_cols=24 Identities=38% Similarity=0.432 Sum_probs=21.3
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
.+.+||+++|.+++|||||+.++.
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~ 42 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLI 42 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH
T ss_pred cceeEEEEECcCCCCHHHHHHHHH
Confidence 356899999999999999999874
No 61
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.27 E-value=0.056 Score=51.10 Aligned_cols=21 Identities=48% Similarity=0.582 Sum_probs=18.6
Q ss_pred eeEEEeecCCCCchhHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMK 552 (819)
-.++|+|..||||||++|.+-
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999999884
No 62
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.20 E-value=0.065 Score=50.54 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.2
Q ss_pred HhcceeeEEEeecCCCCchhHHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
..++.+||+|+|..++|||||++++.
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~ 43 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIA 43 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHH
Confidence 44568999999999999999999863
No 63
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.17 E-value=0.068 Score=49.43 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.1
Q ss_pred eeeEEEeecCCCCchhHHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMK 552 (819)
..|++|+|.+++||||+++++-
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 5799999999999999999873
No 64
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.16 E-value=0.069 Score=49.13 Aligned_cols=25 Identities=32% Similarity=0.495 Sum_probs=21.0
Q ss_pred hcceeeEEEeecCCCCchhHHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
....+||+|+|..++|||||++++.
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHh
Confidence 3457999999999999999998864
No 65
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.15 E-value=0.066 Score=50.45 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=21.9
Q ss_pred HhcceeeEEEeecCCCCchhHHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
...+.+||+|+|..++|||||+.++.
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~ 35 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFM 35 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHH
Confidence 44567999999999999999998764
No 66
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.13 E-value=0.068 Score=50.53 Aligned_cols=24 Identities=29% Similarity=0.650 Sum_probs=20.6
Q ss_pred hcceeeEEEeecCCCCchhHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
.+..+||+|+|..++|||||++++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l 28 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQY 28 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHH
T ss_pred cCcceEEEEECcCCCCHHHHHHHH
Confidence 456899999999999999999876
No 67
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.11 E-value=0.047 Score=51.20 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=21.0
Q ss_pred hcceeeEEEeecCCCCchhHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
.....|++++|..++||||++.++
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l 68 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLL 68 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHH
Confidence 356789999999999999999876
No 68
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.09 E-value=0.061 Score=51.51 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=19.5
Q ss_pred hcceeeEEEeecCCCCchhHHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
.++.+||+|+|..++||||+++++.
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~ 28 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLL 28 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHh
Confidence 4567999999999999999999763
No 69
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.07 E-value=0.073 Score=48.59 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=20.9
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
.+.+|++++|..++||||+++++.
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHH
Confidence 356999999999999999999763
No 70
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.05 E-value=0.058 Score=49.87 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=21.0
Q ss_pred cceeeEEEeecCCCCchhHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQM 551 (819)
++.+|++++|..++||||+++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l 38 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRL 38 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999775
No 71
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.04 E-value=0.07 Score=50.01 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=21.8
Q ss_pred hcceeeEEEeecCCCCchhHHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
+...+||+|+|..++||||+++++.
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~ 29 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFV 29 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHH
Confidence 3457999999999999999999864
No 72
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.99 E-value=0.067 Score=49.25 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=20.6
Q ss_pred hcceeeEEEeecCCCCchhHHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
..+.+|++++|..++||||+++++.
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~ 29 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYT 29 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHh
Confidence 3467999999999999999997753
No 73
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.99 E-value=0.072 Score=49.20 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.2
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
...+||+|+|..++|||||++++.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~ 32 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYT 32 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHh
Confidence 457999999999999999998763
No 74
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.98 E-value=0.072 Score=50.52 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=21.7
Q ss_pred HhcceeeEEEeecCCCCchhHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
...+.+|++|+|..++|||||++++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~ 40 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRY 40 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHH
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHH
Confidence 3446899999999999999999875
No 75
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.92 E-value=0.076 Score=50.22 Aligned_cols=27 Identities=26% Similarity=0.213 Sum_probs=21.7
Q ss_pred HHhcceeeEEEeecCCCCchhHHHHHH
Q 003444 526 IERRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 526 ~~~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
....+.+||+|+|..++||||+++++.
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~ 44 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFV 44 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHH
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHh
Confidence 345678999999999999999998863
No 76
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.91 E-value=0.076 Score=49.20 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=21.4
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
...+|++|+|..++||||+++++.
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 457999999999999999998764
No 77
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.91 E-value=0.058 Score=52.25 Aligned_cols=26 Identities=15% Similarity=0.371 Sum_probs=22.4
Q ss_pred HhcceeeEEEeecCCCCchhHHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
..++..|++|+|.+++||||++.++-
T Consensus 34 ~~~~~~~i~ivG~~gvGKTtl~~~l~ 59 (226)
T 2hf9_A 34 NKHGVVAFDFMGAIGSGKTLLIEKLI 59 (226)
T ss_dssp HHTTCEEEEEEESTTSSHHHHHHHHH
T ss_pred HhCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 44567899999999999999998874
No 78
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.89 E-value=0.059 Score=51.26 Aligned_cols=18 Identities=50% Similarity=0.761 Sum_probs=16.3
Q ss_pred eEEEeecCCCCchhHHHH
Q 003444 533 KLLLVGCSGSGTSTIFKQ 550 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQ 550 (819)
-++|+|..||||||++|.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999994
No 79
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.87 E-value=0.23 Score=47.47 Aligned_cols=38 Identities=5% Similarity=0.024 Sum_probs=31.7
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCcc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYD 783 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYD 783 (819)
+.+++||++|+ ...+..|..+|.+++++|||+|+++-+
T Consensus 57 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~ 94 (212)
T 2j0v_A 57 VNLGLWDTAGQ-EDYSRLRPLSYRGADIFVLAFSLISKA 94 (212)
T ss_dssp EEEEEECCCCC-CCCCC--CGGGTTCSEEEEEEETTCHH
T ss_pred EEEEEEECCCc-HHHHHHHHhhccCCCEEEEEEECCCHH
Confidence 68999999998 667888999999999999999998643
No 80
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.87 E-value=0.077 Score=49.83 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=20.5
Q ss_pred hcceeeEEEeecCCCCchhHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
..+.+||+|+|..++|||||++++
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l 40 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRF 40 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHHHHH
Confidence 346799999999999999999975
No 81
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.87 E-value=0.068 Score=49.02 Aligned_cols=24 Identities=13% Similarity=0.318 Sum_probs=21.2
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
.+..||+|+|..++||||+++++.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 457899999999999999999863
No 82
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.84 E-value=0.075 Score=50.09 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=21.2
Q ss_pred HHhcceeeEEEeecCCCCchhHHHHH
Q 003444 526 IERRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 526 ~~~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
...++.+|++|+|..++||||+++++
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l 43 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAF 43 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHH
T ss_pred cccceeeEEEEECcCCCCHHHHHHHH
Confidence 34567899999999999999999875
No 83
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.81 E-value=0.22 Score=46.96 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=32.7
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
+.+++||++|+ ...+..|..++.+++++|||+|+++.
T Consensus 68 ~~~~i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~ 104 (201)
T 2q3h_A 68 VRLQLCDTAGQ-DEFDKLRPLCYTNTDIFLLCFSVVSP 104 (201)
T ss_dssp EEEEEEECCCS-TTCSSSGGGGGTTCSEEEEEEETTCH
T ss_pred EEEEEEECCCC-HHHHHHhHhhcCCCcEEEEEEECCCH
Confidence 67889999998 66778899999999999999999864
No 84
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.80 E-value=0.072 Score=47.90 Aligned_cols=21 Identities=29% Similarity=0.597 Sum_probs=19.2
Q ss_pred eeEEEeecCCCCchhHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMK 552 (819)
.|++++|..++||||+++++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999999864
No 85
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.79 E-value=0.078 Score=48.71 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.8
Q ss_pred cceeeEEEeecCCCCchhHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQM 551 (819)
...+|++|+|..++||||+++++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l 30 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRF 30 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHH
Confidence 45799999999999999999875
No 86
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.78 E-value=0.064 Score=49.48 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.7
Q ss_pred ceeeEEEeecCCCCchhHHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMK 552 (819)
+.+|++|+|..++|||||++++.
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~ 28 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFL 28 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999999763
No 87
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.78 E-value=0.082 Score=50.36 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=21.2
Q ss_pred HhcceeeEEEeecCCCCchhHHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
...+.+||+|+|..++||||+++++.
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~ 45 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFV 45 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHH
Confidence 34578999999999999999998764
No 88
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.75 E-value=0.079 Score=48.82 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=20.2
Q ss_pred ceeeEEEeecCCCCchhHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQM 551 (819)
+.+||+++|..++||||+++++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l 25 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISY 25 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHH
Confidence 5789999999999999999876
No 89
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.74 E-value=0.29 Score=44.68 Aligned_cols=37 Identities=3% Similarity=0.038 Sum_probs=24.8
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+.+||++|+ ...+..|..++.+++++|||+|+++.
T Consensus 58 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 94 (182)
T 1ky3_A 58 ATMQVWDTAGQ-ERFQSLGVAFYRGADCCVLVYDVTNA 94 (182)
T ss_dssp EEEEEECCC-----------CCSTTCCEEEEEEETTCH
T ss_pred EEEEEEECCCC-hHhhhhhHHHhhcCCEEEEEEECCCh
Confidence 68999999998 66778899999999999999999864
No 90
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.73 E-value=0.083 Score=49.04 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=20.1
Q ss_pred HhcceeeEEEeecCCCCchhHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFK 549 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlK 549 (819)
.....+|++|+|..++||||+++
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~ 32 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLK 32 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHH
T ss_pred ccccccEEEEECCCCCCHHHHHH
Confidence 34568999999999999999984
No 91
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.71 E-value=0.083 Score=49.51 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.7
Q ss_pred HhcceeeEEEeecCCCCchhHHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
-.++.+||+++|..++||||+++++.
T Consensus 12 ~~~~~~~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 12 FNHQEHKVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp HTTSCEEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHh
Confidence 34678999999999999999999864
No 92
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.70 E-value=0.082 Score=48.90 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=21.5
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
.+.+||+|+|..++||||+++++.
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHH
T ss_pred CceEEEEEECcCCCCHHHHHHHHH
Confidence 457899999999999999999864
No 93
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.68 E-value=0.26 Score=46.88 Aligned_cols=36 Identities=3% Similarity=0.038 Sum_probs=32.6
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSd 781 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++
T Consensus 72 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~ 107 (201)
T 3oes_A 72 FHLHLVDTAGQ-DEYSILPYSFIIGVHGYVLVYSVTS 107 (201)
T ss_dssp EEEEEEEECCC-CTTCCCCGGGTTTCCEEEEEEETTC
T ss_pred EEEEEEECCCc-cchHHHHHHHHhcCCEEEEEEeCCC
Confidence 67899999998 6677889999999999999999985
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.68 E-value=0.083 Score=49.73 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.9
Q ss_pred cceeeEEEeecCCCCchhHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQM 551 (819)
.+.+|++|+|..++||||+++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l 36 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQL 36 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHH
Confidence 45789999999999999999986
No 95
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.65 E-value=0.069 Score=52.21 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=18.6
Q ss_pred eeEEEeecCCCCchhHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMK 552 (819)
--++|+|+.||||||++|++-
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 347889999999999999986
No 96
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.52 E-value=0.085 Score=49.72 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=22.4
Q ss_pred HhcceeeEEEeecCCCCchhHHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
.....+||+|+|..++|||||++++.
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~ 44 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYA 44 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHh
Confidence 34568999999999999999998763
No 97
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.48 E-value=0.086 Score=49.10 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.7
Q ss_pred cceeeEEEeecCCCCchhHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQM 551 (819)
++.+|++++|..++||||+++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l 38 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKF 38 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHH
Confidence 67899999999999999999876
No 98
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.40 E-value=0.085 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=19.4
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
.+..|++++|..++||||+++++.
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~ 44 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLK 44 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 456899999999999999999764
No 99
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.36 E-value=0.3 Score=45.81 Aligned_cols=37 Identities=5% Similarity=0.049 Sum_probs=32.9
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++.
T Consensus 66 ~~~~i~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 102 (194)
T 2atx_A 66 YLLGLYDTAGQ-EDYDRLRPLSYPMTDVFLICFSVVNP 102 (194)
T ss_dssp EEEEEECCCCS-SSSTTTGGGGCTTCSEEEEEEETTCH
T ss_pred EEEEEEECCCC-cchhHHHHHhcCCCCEEEEEEECCCH
Confidence 68899999998 66778899999999999999999864
No 100
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.35 E-value=0.088 Score=49.18 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=20.4
Q ss_pred HhcceeeEEEeecCCCCchhHHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
...+.+||+++|..++|||||++++.
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~ 42 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFS 42 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHH
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHh
Confidence 34457999999999999999999874
No 101
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.35 E-value=0.095 Score=49.90 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=22.1
Q ss_pred HhcceeeEEEeecCCCCchhHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
-.++.+||+++|..++||||+++++
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l 49 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKL 49 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHH
T ss_pred ccCCccEEEEECCCCCCHHHHHHHH
Confidence 3456899999999999999999976
No 102
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.34 E-value=0.08 Score=49.74 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=22.1
Q ss_pred HhcceeeEEEeecCCCCchhHHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
+..+.+||+|+|..++|||||++++.
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~ 46 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFT 46 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHH
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHh
Confidence 34567999999999999999998753
No 103
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.34 E-value=0.087 Score=50.10 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=18.8
Q ss_pred HHhcceeeEEEeecCCCCchhHHHH
Q 003444 526 IERRTLQKLLLVGCSGSGTSTIFKQ 550 (819)
Q Consensus 526 ~~~k~~vKLLLLGaGESGKSTIlKQ 550 (819)
...++.+||+|+|..++|||||++.
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~ 39 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKV 39 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHH
Confidence 3455689999999999999999873
No 104
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.31 E-value=0.083 Score=51.30 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=18.0
Q ss_pred eEEEeecCCCCchhHHHHHH
Q 003444 533 KLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMK 552 (819)
++.|+|+.||||||++|-+-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~ 21 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIV 21 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999998764
No 105
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.26 E-value=0.088 Score=50.58 Aligned_cols=26 Identities=12% Similarity=0.351 Sum_probs=21.8
Q ss_pred HhcceeeEEEeecCCCCchhHHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
...+..||+|+|..++||||++.++.
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~ 33 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHh
Confidence 45568999999999999999999874
No 106
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.26 E-value=0.095 Score=48.97 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=21.3
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
...+||+|+|..++|||||++++.
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~ 37 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFA 37 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHH
Confidence 457899999999999999998863
No 107
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.26 E-value=0.092 Score=49.49 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.0
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
...+|++|+|..++||||+++++.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~ 42 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFT 42 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHh
Confidence 347999999999999999998763
No 108
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.25 E-value=0.094 Score=49.08 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.9
Q ss_pred cceeeEEEeecCCCCchhHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQM 551 (819)
.+..|++|+|..++||||+++++
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l 43 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSL 43 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 45789999999999999999986
No 109
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.25 E-value=0.099 Score=50.75 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.0
Q ss_pred hcceeeEEEeecCCCCchhHHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
....+||+|+|..++|||||++++.
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~ 49 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFA 49 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHH
T ss_pred cceeeEEEEECCCCCCHHHHHHHHh
Confidence 3567999999999999999999763
No 110
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.24 E-value=0.093 Score=48.66 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=19.2
Q ss_pred eeEEEeecCCCCchhHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMK 552 (819)
+|++++|..++||||+++++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 699999999999999999763
No 111
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.20 E-value=0.097 Score=48.73 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.9
Q ss_pred cceeeEEEeecCCCCchhHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQM 551 (819)
.+.+||+|+|..++|||||++++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l 35 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRF 35 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHH
Confidence 45789999999999999999887
No 112
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.20 E-value=0.082 Score=50.70 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=20.6
Q ss_pred HhcceeeEEEeecCCCCchhHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
.....+|++|+|.+++|||||++++
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l 43 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTF 43 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHT
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHH
Confidence 3456799999999999999999986
No 113
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.16 E-value=0.09 Score=50.04 Aligned_cols=23 Identities=43% Similarity=0.586 Sum_probs=20.7
Q ss_pred cceeeEEEeecCCCCchhHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQM 551 (819)
...+||+|+|..++|||||+.++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l 28 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRF 28 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHH
Confidence 45789999999999999999876
No 114
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.14 E-value=0.093 Score=47.47 Aligned_cols=21 Identities=33% Similarity=0.635 Sum_probs=19.1
Q ss_pred eeEEEeecCCCCchhHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMK 552 (819)
+|++++|..++||||+++++.
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~ 21 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLK 21 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999873
No 115
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.13 E-value=0.097 Score=49.55 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=20.9
Q ss_pred hcceeeEEEeecCCCCchhHHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
..+.+||+|+|..++|||||++++.
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~ 49 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFL 49 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHH
Confidence 4567999999999999999998763
No 116
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.09 E-value=0.17 Score=47.04 Aligned_cols=37 Identities=5% Similarity=-0.020 Sum_probs=32.9
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+.+||++|+ ...+..|..++.++++||||+|+++-
T Consensus 64 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~ 100 (195)
T 1x3s_A 64 AKLAIWDTAGQ-ERFRTLTPSYYRGAQGVILVYDVTRR 100 (195)
T ss_dssp EEEEEEEECSS-GGGCCSHHHHHTTCCEEEEEEETTCH
T ss_pred EEEEEEeCCCc-hhhhhhhHHHhccCCEEEEEEECcCH
Confidence 68999999998 66778899999999999999999864
No 117
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.07 E-value=0.086 Score=50.27 Aligned_cols=23 Identities=13% Similarity=0.301 Sum_probs=19.4
Q ss_pred eEEEeecCCCCchhHHHHHHHHh
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy 555 (819)
-+.|+|+.||||||++|.+.=++
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 47899999999999999885443
No 118
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.02 E-value=0.097 Score=49.12 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.6
Q ss_pred cceeeEEEeecCCCCchhHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQM 551 (819)
...+||+|+|..++|||||++++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l 42 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRY 42 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHH
Confidence 35789999999999999999875
No 119
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.02 E-value=0.34 Score=44.53 Aligned_cols=36 Identities=8% Similarity=0.139 Sum_probs=32.2
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSd 781 (819)
+.+++||++|+ ...+..|..++.+++++|||+|+++
T Consensus 53 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~ 88 (186)
T 1mh1_A 53 VNLGLWDTAGQ-EDYDRLRPLSYPQTDVSLICFSLVS 88 (186)
T ss_dssp EEEEEECCCCS-GGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred EEEEEEECCCC-HhHHHHHHHhccCCcEEEEEEECCC
Confidence 67889999998 6677889899999999999999986
No 120
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.01 E-value=0.089 Score=50.49 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=22.2
Q ss_pred HhcceeeEEEeecCCCCchhHHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
...+.+||+|+|..++|||||++++.
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~ 46 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYT 46 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHh
Confidence 34567999999999999999998753
No 121
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.99 E-value=0.1 Score=50.00 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.5
Q ss_pred HhcceeeEEEeecCCCCchhHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
.....+||+|+|..++|||||++++
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l 49 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRF 49 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHH
T ss_pred ccccceEEEEECcCCCCHHHHHHHH
Confidence 3456799999999999999999976
No 122
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.99 E-value=0.099 Score=49.41 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=20.4
Q ss_pred HhcceeeEEEeecCCCCchhHHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
...+.+||+|+|..++|||||++++.
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~ 41 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYT 41 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHH
Confidence 44568999999999999999999864
No 123
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.98 E-value=0.39 Score=43.78 Aligned_cols=37 Identities=8% Similarity=0.017 Sum_probs=33.2
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+.+||++|+ ...+..|..++.+++++|||+|+++-
T Consensus 58 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 94 (181)
T 3tw8_B 58 VKLQIWDTAGQ-ERFRTITSTYYRGTHGVIVVYDVTSA 94 (181)
T ss_dssp EEEEEEEETTG-GGCSSCCGGGGTTCSEEEEEEETTCH
T ss_pred EEEEEEcCCCc-hhhhhhHHHHhccCCEEEEEEECCCH
Confidence 68999999998 67788899999999999999999863
No 124
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.90 E-value=0.091 Score=49.36 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=19.8
Q ss_pred hcceeeEEEeecCCCCchhHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
..+.+||+|+|..++||||+++++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l 41 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKL 41 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHT
T ss_pred CCCccEEEEECCCCCCHHHHHHHH
Confidence 345799999999999999999876
No 125
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.88 E-value=0.11 Score=48.74 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.0
Q ss_pred ceeeEEEeecCCCCchhHHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMK 552 (819)
...|++|+|..++||||+++++-
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45799999999999999999873
No 126
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.86 E-value=0.1 Score=49.63 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=19.9
Q ss_pred HhcceeeEEEeecCCCCchhHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
..++.+||+|+|..++|||||++++
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l 48 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRL 48 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHH
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHH
Confidence 4456799999999999999999976
No 127
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.83 E-value=0.39 Score=45.18 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=32.9
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
+.+++||++|+ ...+..|..++.+++++|||+|+++-
T Consensus 71 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 107 (194)
T 3reg_A 71 FILHLWDTAGQ-EEYDRLRPLSYADSDVVLLCFAVNNR 107 (194)
T ss_dssp EEEEEEEECCS-GGGTTTGGGGCTTCSEEEEEEETTCH
T ss_pred EEEEEEECCCc-HHHHHHhHhhccCCcEEEEEEECCCH
Confidence 67899999998 67788899999999999999999864
No 128
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.82 E-value=0.098 Score=50.45 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.2
Q ss_pred eeEEEeecCCCCchhHHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKI 553 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKI 553 (819)
--+.|+|++||||||++|++=-
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999854
No 129
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.79 E-value=0.11 Score=48.32 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.4
Q ss_pred cceeeEEEeecCCCCchhHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQM 551 (819)
....||+|+|..++||||+++++
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l 43 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNAL 43 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 35679999999999999999875
No 130
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.79 E-value=0.11 Score=49.81 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=20.7
Q ss_pred cceeeEEEeecCCCCchhHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQM 551 (819)
.+..|++|+|.+++||||+++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l 45 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHML 45 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHH
Confidence 45689999999999999999976
No 131
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.78 E-value=0.11 Score=49.31 Aligned_cols=23 Identities=13% Similarity=0.470 Sum_probs=20.8
Q ss_pred cceeeEEEeecCCCCchhHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQM 551 (819)
...+||+|+|..++|||||++++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l 46 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERF 46 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHH
Confidence 35789999999999999999986
No 132
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.75 E-value=0.095 Score=51.11 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=20.3
Q ss_pred eeEEEeecCCCCchhHHHHHHHHh
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy 555 (819)
-.+.|+|++||||||++|.+-=++
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999885444
No 133
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.74 E-value=0.11 Score=49.90 Aligned_cols=37 Identities=8% Similarity=0.084 Sum_probs=27.0
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
+.+.+||++|+ ...+..|..++.+++++|||+|+++-
T Consensus 78 ~~l~i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 114 (204)
T 4gzl_A 78 VNLGLWDTAGL-EDYDRLRPLSYPQTDVFLICFSLVSP 114 (204)
T ss_dssp EEEEEEEECCS-GGGTTTGGGGCTTCSEEEEEEETTCH
T ss_pred EEEEEEECCCc-hhhHHHHHHHhccCCEEEEEEECCCH
Confidence 45667888887 55666777778888888888887753
No 134
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=90.65 E-value=0.1 Score=48.55 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=21.2
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
..++|+|..||||||++|.+.-.++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999876554
No 135
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.62 E-value=0.12 Score=49.94 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=21.6
Q ss_pred HhcceeeEEEeecCCCCchhHHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
...+.+||+++|..++|||||++++.
T Consensus 30 ~~~~~~ki~vvG~~~vGKSsli~~l~ 55 (214)
T 2j1l_A 30 PGVRSVKVVLVGDGGCGKTSLLMVFA 55 (214)
T ss_dssp --CCEEEEEEEECTTSSHHHHHHHHH
T ss_pred CCcceEEEEEECcCCCCHHHHHHHHH
Confidence 34568999999999999999998863
No 136
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=90.58 E-value=0.1 Score=49.83 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.0
Q ss_pred eEEEeecCCCCchhHHHHHHHHhc
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy~ 556 (819)
.+.|+|++||||||++|.+.-++.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 578999999999999999865443
No 137
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.51 E-value=0.08 Score=50.80 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=32.4
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSd 781 (819)
..+++||++|+ ...+..|..++.++++||||+|+++
T Consensus 84 ~~l~l~Dt~G~-~~~~~~~~~~~~~~d~iilV~D~~~ 119 (217)
T 2f7s_A 84 VHLQLWDTAGQ-ERFRSLTTAFFRDAMGFLLMFDLTS 119 (217)
T ss_dssp EEEEEEEEESH-HHHHHHHHHHHTTCCEEEEEEETTC
T ss_pred EEEEEEECCCc-HhHHhHHHHHhcCCCEEEEEEECcC
Confidence 68999999998 6677789999999999999999886
No 138
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.46 E-value=0.11 Score=49.44 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=17.8
Q ss_pred eEEEeecCCCCchhHHHHHH
Q 003444 533 KLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMK 552 (819)
-++|+|..||||||++|.+-
T Consensus 4 ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 36899999999999999884
No 139
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=90.45 E-value=0.1 Score=48.78 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=21.3
Q ss_pred cceeeEEEeecCCCCchhHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQM 551 (819)
++.+|++++|..++||||+++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l 42 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRL 42 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHH
Confidence 56899999999999999999986
No 140
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.41 E-value=0.083 Score=48.95 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=12.5
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
...+|++|+|..++|||||++++.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~ 29 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFS 29 (183)
T ss_dssp SEEEEEEEECCCCC----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999998763
No 141
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.29 E-value=0.15 Score=48.51 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=30.7
Q ss_pred ccEEEEEeccccccccccc--ccccCCCCEEEEEEeCCC
Q 003444 745 LRYQLIRVQARGLGENCKW--LEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKW--i~~FEdVtaVIFvVSLSd 781 (819)
..+++||++|+.+-.+..| ..+|.+++++|||+|+++
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~ 107 (196)
T 3llu_A 69 VNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQD 107 (196)
T ss_dssp CCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTS
T ss_pred eEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCC
Confidence 6899999999833245567 789999999999999885
No 142
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.28 E-value=0.12 Score=50.20 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=19.9
Q ss_pred HHhcceeeEEEeecCCCCchhHHHHH
Q 003444 526 IERRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 526 ~~~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
......+||+|+|..++|||||++++
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l 47 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVL 47 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHH
T ss_pred CCccceEEEEEECcCCCCHHHHHHHH
Confidence 34456799999999999999999876
No 143
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.26 E-value=0.12 Score=50.10 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=21.7
Q ss_pred hcceeeEEEeecCCCCchhHHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
..+.+||+|+|..++|||||++++.
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~ 47 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFT 47 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHH
T ss_pred cccceEEEEECcCCCCHHHHHHHHH
Confidence 3457999999999999999998863
No 144
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.23 E-value=0.13 Score=50.86 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=20.5
Q ss_pred HHhcceeeEEEeecCCCCchhHHHHH
Q 003444 526 IERRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 526 ~~~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
......+||+|+|..++||||+++.+
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l 49 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSI 49 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHH
Confidence 34556899999999999999999875
No 145
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.22 E-value=0.11 Score=49.66 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=19.4
Q ss_pred EEEeecCCCCchhHHHHHHHHhc
Q 003444 534 LLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 534 LLLLGaGESGKSTIlKQMKILy~ 556 (819)
+.|+|+.||||||++|.+-=++.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999998865543
No 146
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.16 E-value=0.13 Score=48.57 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=20.1
Q ss_pred ceeeEEEeecCCCCchhHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQM 551 (819)
..+||+|+|..++|||||++++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l 28 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRY 28 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHH
T ss_pred eeeEEEEECCCCCCHHHHHHHH
Confidence 4689999999999999999876
No 147
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.15 E-value=0.14 Score=47.93 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=20.4
Q ss_pred HhcceeeEEEeecCCCCchhHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
......||+|+|..++|||||++++
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l 37 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQV 37 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHH
Confidence 3456789999999999999999976
No 148
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.15 E-value=0.35 Score=45.56 Aligned_cols=37 Identities=3% Similarity=0.055 Sum_probs=32.9
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+.+||++|+ ...+..|..++.+++++|||+|+++-
T Consensus 57 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (207)
T 1vg8_A 57 VTMQIWDTAGQ-ERFQSLGVAFYRGADCCVLVFDVTAP 93 (207)
T ss_dssp EEEEEEEECSS-GGGSCSCCGGGTTCSEEEEEEETTCH
T ss_pred EEEEEEeCCCc-HHHHHhHHHHHhCCcEEEEEEECCCH
Confidence 68999999998 66778899999999999999999864
No 149
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.09 E-value=0.15 Score=48.00 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.4
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
...+||+++|..++||||+++++.
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~ 39 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYA 39 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHh
Confidence 457899999999999999998864
No 150
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.09 E-value=0.18 Score=46.19 Aligned_cols=38 Identities=8% Similarity=0.091 Sum_probs=33.6
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCcc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYD 783 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYD 783 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++.+
T Consensus 56 ~~~~~~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~ 93 (178)
T 2hxs_A 56 VTLQIWDIGGQ-TIGGKMLDKYIYGAQGVLLVYDITNYQ 93 (178)
T ss_dssp EEEEEEECTTC-CTTCTTHHHHHTTCSEEEEEEETTCHH
T ss_pred EEEEEEECCCC-ccccchhhHHHhhCCEEEEEEECCCHH
Confidence 68999999998 667788999999999999999998643
No 151
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=89.98 E-value=0.17 Score=49.26 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=23.3
Q ss_pred cceeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
+.-..+.|+|+.||||||++|.+--++.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4556889999999999999998865554
No 152
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=89.95 E-value=0.17 Score=46.14 Aligned_cols=37 Identities=8% Similarity=0.064 Sum_probs=32.2
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+.+||++|+ ...+..|..++.+++++|||+|+++.
T Consensus 57 ~~~~~~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (181)
T 2fn4_A 57 ARLDILDTAGQ-EEFGAMREQYMRAGHGFLLVFAINDR 93 (181)
T ss_dssp EEEEEEECCCT-TTTSCCHHHHHHHCSEEEEEEETTCH
T ss_pred EEEEEEECCCc-hhhHHHHHHHHhhCCEEEEEEeCCCH
Confidence 57899999998 56677888899999999999999863
No 153
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.90 E-value=0.13 Score=46.80 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=17.6
Q ss_pred eEEEeecCCCCchhHHHHH
Q 003444 533 KLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQM 551 (819)
-|+|.|..||||||+.|.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 154
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.76 E-value=0.32 Score=44.01 Aligned_cols=36 Identities=6% Similarity=-0.054 Sum_probs=19.3
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSd 781 (819)
..+.+||++|+ ...+..|..++.+++++|+|+|+++
T Consensus 49 ~~~~i~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~ 84 (166)
T 3q72_A 49 ASLMVYDIWEQ-DGGRWLPGHCMAMGDAYVIVYSVTD 84 (166)
T ss_dssp EEEEEEECC----------------CCEEEEEEETTC
T ss_pred EEEEEEECCCC-ccchhhhhhhhhhCCEEEEEEECCC
Confidence 68899999998 6677788999999999999999985
No 155
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=89.74 E-value=0.16 Score=48.60 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.5
Q ss_pred ceeeEEEeecCCCCchhHHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMK 552 (819)
..+|++|+|.+++|||||+.++.
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999998753
No 156
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=89.72 E-value=0.17 Score=48.42 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=21.1
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
...+||+|+|..++|||||++++.
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~ 30 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYT 30 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHh
Confidence 357999999999999999998764
No 157
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=89.65 E-value=0.13 Score=48.87 Aligned_cols=24 Identities=29% Similarity=0.217 Sum_probs=20.3
Q ss_pred eeEEEeecCCCCchhHHHHHHHHh
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy 555 (819)
..+.|+|+.||||||++|.+.=++
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 357899999999999999886554
No 158
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=89.60 E-value=0.34 Score=44.68 Aligned_cols=36 Identities=3% Similarity=-0.020 Sum_probs=29.7
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSd 781 (819)
..+++||++|+ ...+..|..++.+++++|||+++++
T Consensus 52 ~~~~i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~ 87 (189)
T 4dsu_A 52 CLLDILDTAGQ-EEYSAMRDQYMRTGEGFLCVFAINN 87 (189)
T ss_dssp EEEEEEECCCC----CTTHHHHHHHCSEEEEEEETTC
T ss_pred EEEEEEECCCc-HHHHHHHHHHHhcCCEEEEEEECCC
Confidence 57889999998 6677888889999999999999985
No 159
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=89.59 E-value=0.15 Score=47.26 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=18.5
Q ss_pred eEEEeecCCCCchhHHHHHHH
Q 003444 533 KLLLVGCSGSGTSTIFKQAKI 553 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKI 553 (819)
-|+|.|..||||||+.|++.-
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478999999999999998864
No 160
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=89.57 E-value=0.2 Score=47.13 Aligned_cols=36 Identities=8% Similarity=0.057 Sum_probs=31.7
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSd 781 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++
T Consensus 73 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~ 108 (208)
T 2yc2_C 73 VELFLLDTAGS-DLYKEQISQYWNGVYYAILVFDVSS 108 (208)
T ss_dssp EEEEEEETTTT-HHHHHHHSTTCCCCCEEEEEEETTC
T ss_pred EEEEEEECCCc-HHHHHHHHHHHhhCcEEEEEEECCC
Confidence 57899999998 5667789999999999999999885
No 161
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.55 E-value=0.55 Score=42.45 Aligned_cols=37 Identities=8% Similarity=0.033 Sum_probs=27.5
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+.+||++|+ ...+..|..++.+++++|||+|+++.
T Consensus 55 ~~l~i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 91 (170)
T 1z08_A 55 VNLAIWDTAGQ-ERFHALGPIYYRDSNGAILVYDITDE 91 (170)
T ss_dssp EEEEEEECCCC--------CCSSTTCSEEEEEEETTCH
T ss_pred EEEEEEECCCc-HhhhhhHHHHhccCCEEEEEEECcCH
Confidence 68999999998 66778899999999999999999864
No 162
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=89.51 E-value=0.25 Score=45.66 Aligned_cols=37 Identities=3% Similarity=0.034 Sum_probs=25.7
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++-
T Consensus 57 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (183)
T 2fu5_C 57 IKLQIWDTAGQ-ERFRTITTAYYRGAMGIMLVYDITNE 93 (183)
T ss_dssp EEEEEEEC----------CCTTTTTCSEEEEEEETTCH
T ss_pred EEEEEEcCCCC-hhhhhhHHHHHhcCCEEEEEEECcCH
Confidence 68999999998 66778899999999999999999863
No 163
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=89.51 E-value=0.17 Score=48.29 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.3
Q ss_pred ceeeEEEeecCCCCchhHHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMK 552 (819)
..+||+++|..++|||||++++.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~ 46 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFS 46 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999998753
No 164
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.49 E-value=0.18 Score=48.35 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.4
Q ss_pred ceeeEEEeecCCCCchhHHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMK 552 (819)
..+||+++|..++|||||++++.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~ 46 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFS 46 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECcCCCCHHHHHHHHh
Confidence 46899999999999999998753
No 165
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.46 E-value=0.16 Score=48.20 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=20.3
Q ss_pred HhcceeeEEEeecCCCCchhHHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
.....+||+|+|..++||||++.++.
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~ 41 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFV 41 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHH
Confidence 44567999999999999999998764
No 166
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=89.40 E-value=0.14 Score=49.43 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=20.6
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
-.-+.|+|..||||||++|.+.=+++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 34588999999999999999843333
No 167
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.37 E-value=0.25 Score=45.36 Aligned_cols=37 Identities=5% Similarity=0.088 Sum_probs=26.6
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++-
T Consensus 60 ~~~~~~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~ 96 (180)
T 2g6b_A 60 VKLQMWDTAGQ-ERFRSVTHAYYRDAHALLLLYDVTNK 96 (180)
T ss_dssp EEEEEEECCCC---------CCGGGCSEEEEEEETTCH
T ss_pred EEEEEEeCCCc-HHHHHHHHHHccCCCEEEEEEECCCH
Confidence 68999999998 66778899999999999999999863
No 168
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=89.32 E-value=0.21 Score=48.11 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=21.3
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
-..+.|+|..||||||++|.+.=+++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999998865543
No 169
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=89.25 E-value=0.16 Score=46.75 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=19.3
Q ss_pred eEEEeecCCCCchhHHHHHHHHh
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy 555 (819)
.|+|.|..||||||+.|.+.-.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999885443
No 170
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.24 E-value=0.17 Score=46.46 Aligned_cols=37 Identities=3% Similarity=0.071 Sum_probs=32.6
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
+.+.+||++|+ ...+..|..++.+++++|||+++++.
T Consensus 66 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 102 (187)
T 2a9k_A 66 VQIDILDTAGQ-EDYAAIRDNYFRSGEGFLCVFSITEM 102 (187)
T ss_dssp EEEEEEECCCT-TCCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred EEEEEEECCCC-cccHHHHHHHhccCCEEEEEEECcCH
Confidence 57899999998 66778889999999999999999864
No 171
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.23 E-value=0.15 Score=49.65 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=19.0
Q ss_pred eEEEeecCCCCchhHHHHHHHHh
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy 555 (819)
-+.|+|+.||||||++|-+-=++
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999875333
No 172
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.21 E-value=0.38 Score=43.98 Aligned_cols=37 Identities=5% Similarity=0.083 Sum_probs=33.0
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+.+||++|+ ...+..|..++.+++++|||+++++-
T Consensus 56 ~~~~i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~ 92 (177)
T 1wms_A 56 VTMQIWDTAGQ-ERFRSLRTPFYRGSDCCLLTFSVDDS 92 (177)
T ss_dssp EEEEEEECCCC-GGGHHHHGGGGTTCSEEEEEEETTCH
T ss_pred EEEEEEeCCCc-hhhhhhHHHHHhcCCEEEEEEECcCH
Confidence 68999999998 66778899999999999999999864
No 173
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=89.14 E-value=0.11 Score=48.94 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=7.6
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
...+||+|+|..++||||+++++.
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~ 41 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFT 41 (208)
T ss_dssp EEEEEEEEC---------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999998763
No 174
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=88.70 E-value=0.075 Score=50.64 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=23.1
Q ss_pred HHhcceeeEEEeecCCCCchhHHHHHH
Q 003444 526 IERRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 526 ~~~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
...++.+||+++|..++||||+++++.
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~ 51 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYT 51 (204)
Confidence 345678999999999999999998763
No 175
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=89.06 E-value=0.16 Score=47.51 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=20.3
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
..++|+|..||||||++|.+.-.++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 3588999999999999998854333
No 176
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=89.01 E-value=0.19 Score=49.86 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.9
Q ss_pred hcceeeEEEeecCCCCchhHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
....+||+|||.+++|||||++++
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~ 57 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIF 57 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHH
Confidence 345799999999999999999875
No 177
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.00 E-value=0.38 Score=45.01 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=31.5
Q ss_pred ccEEEEEecccccccc-cccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGEN-CKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsER-kKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+.+||++|+ ...+ ..|..++.+++++|||+|+++.
T Consensus 69 ~~~~l~Dt~G~-~~~~~~~~~~~~~~~d~iilv~D~~~~ 106 (189)
T 1z06_A 69 IKIQLWDTAGQ-ERFRKSMVQHYYRNVHAVVFVYDMTNM 106 (189)
T ss_dssp EEEEEEECCCS-HHHHTTTHHHHHTTCCEEEEEEETTCH
T ss_pred EEEEEEECCCc-hhhhhhhhHHHhcCCCEEEEEEECcCH
Confidence 68999999998 4445 6788899999999999999863
No 178
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.94 E-value=0.17 Score=45.31 Aligned_cols=37 Identities=3% Similarity=0.071 Sum_probs=30.4
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+.+||++|+ ...+..|..++.+++++|||+|+++.
T Consensus 52 ~~~~l~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 88 (168)
T 1u8z_A 52 VQIDILDTAGQ-EDYAAIRDNYFRSGEGFLCVFSITEM 88 (168)
T ss_dssp EEEEEEECCC----CHHHHHHHHHHCSEEEEEEETTCH
T ss_pred EEEEEEECCCc-chhHHHHHHHhhcCCEEEEEEECCCH
Confidence 67999999998 56777888999999999999999864
No 179
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=88.84 E-value=0.17 Score=50.45 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.4
Q ss_pred eeeEEEeecCCCCchhHHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMK 552 (819)
...++|+|..||||||++|.+-
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999999999875
No 180
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=88.84 E-value=0.59 Score=44.35 Aligned_cols=37 Identities=8% Similarity=0.056 Sum_probs=33.2
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
+.+.+||++|+ ...+..|..++.++++||||+|+++.
T Consensus 57 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~vilv~d~~~~ 93 (206)
T 2bcg_Y 57 VKLQIWDTAGQ-ERFRTITSSYYRGSHGIIIVYDVTDQ 93 (206)
T ss_dssp EEEEEECCTTT-TTTTCCCGGGGTTCSEEEEEEETTCH
T ss_pred EEEEEEeCCCh-HHHHHHHHHhccCCCEEEEEEECcCH
Confidence 68999999998 66788899999999999999999874
No 181
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=88.82 E-value=0.17 Score=47.20 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=19.8
Q ss_pred eEEEeecCCCCchhHHHHHHHHhc
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy~ 556 (819)
-|+|.|.+||||||+.|.+.-..+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 478999999999999999864443
No 182
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=88.81 E-value=0.18 Score=50.29 Aligned_cols=29 Identities=21% Similarity=0.519 Sum_probs=22.7
Q ss_pred ceeeEEEeecCCCCchhHHHHHHHHhcCCCCCH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSD 562 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMKILy~p~GFS~ 562 (819)
+.+||+|||.+++|||+|+.++ +++ .|..
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~--~~~--~f~~ 40 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRF--MYD--SFDN 40 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHH--HHS--CCC-
T ss_pred CcEEEEEECcCCcCHHHHHHHH--HhC--CCCC
Confidence 4689999999999999999975 444 4753
No 183
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.69 E-value=0.18 Score=48.73 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=20.3
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
.+|+|.|..||||||+.+.+.--++
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999998843333
No 184
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.67 E-value=0.22 Score=44.61 Aligned_cols=36 Identities=6% Similarity=-0.073 Sum_probs=31.7
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSd 781 (819)
..+++||++|+ ...+..|..++.+++++|||+++++
T Consensus 51 ~~~~l~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~ 86 (167)
T 1kao_A 51 SVLEILDTAGT-EQFASMRDLYIKNGQGFILVYSLVN 86 (167)
T ss_dssp EEEEEEECCCT-TCCHHHHHHHHHHCSEEEEEEETTC
T ss_pred EEEEEEECCCc-hhhHHHHHHHhccCCEEEEEEeCCC
Confidence 57999999998 5667778889999999999999986
No 185
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=88.65 E-value=0.12 Score=49.99 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.6
Q ss_pred hcceeeEEEeecCCCCchhHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQ 550 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQ 550 (819)
....+||+|+|..++|||||+++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~ 34 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKR 34 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTT
T ss_pred cccceEEEEECCCCCCHHHHHHH
Confidence 34579999999999999999987
No 186
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=88.62 E-value=0.12 Score=49.08 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.1
Q ss_pred HhcceeeEEEeecCCCCchhHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
......++.|+|..++||||+++.+
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l 46 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTL 46 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHH
Confidence 3445679999999999999999875
No 187
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=88.57 E-value=0.17 Score=50.05 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=21.2
Q ss_pred ceeeEEEeecCCCCchhHHHHHHHHh
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMKILy 555 (819)
.--.+.|+|+.||||||++|.+-=++
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34468899999999999999885554
No 188
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.48 E-value=0.23 Score=46.63 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=19.9
Q ss_pred eeeEEEeecCCCCchhHHHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKI 553 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKI 553 (819)
...++|.|..||||||+.|.+.-
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998853
No 189
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=88.39 E-value=0.45 Score=44.33 Aligned_cols=37 Identities=8% Similarity=0.066 Sum_probs=33.0
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++-
T Consensus 65 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 101 (196)
T 3tkl_A 65 IKLQIWDTAGQ-ERFRTITSSYYRGAHGIIVVYDVTDQ 101 (196)
T ss_dssp EEEEEEEECCS-GGGCTTHHHHHTTCSEEEEEEETTCH
T ss_pred EEEEEEECCCc-HhhhhhHHHHHhhCCEEEEEEECcCH
Confidence 68999999998 67788899999999999999999873
No 190
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=88.35 E-value=0.19 Score=48.59 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=20.7
Q ss_pred ceeeEEEeecCCCCchhHHHHHH-HHh
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAK-ILY 555 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMK-ILy 555 (819)
.-.-+.|+|..||||||++|.+- .+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34568899999999999999874 443
No 191
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=88.28 E-value=0.32 Score=43.81 Aligned_cols=37 Identities=3% Similarity=0.075 Sum_probs=32.8
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+.+||++|+ ...+..|..++.+++++|||+|+++.
T Consensus 55 ~~~~~~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 91 (170)
T 1r2q_A 55 VKFEIWDTAGQ-ERYHSLAPMYYRGAQAAIVVYDITNE 91 (170)
T ss_dssp EEEEEEEECCS-GGGGGGHHHHHTTCSEEEEEEETTCH
T ss_pred EEEEEEeCCCc-HHhhhhhHHhccCCCEEEEEEECCCH
Confidence 68999999998 66778899999999999999999863
No 192
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=88.27 E-value=0.11 Score=50.01 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=20.2
Q ss_pred hcceeeEEEeecCCCCchhHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
....+||+|+|..++||||+++++
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l 31 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRV 31 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBC
T ss_pred ccCccEEEEECCCCCCHHHHHHHH
Confidence 446799999999999999999865
No 193
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.26 E-value=0.2 Score=48.52 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=20.3
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
.+|+|.|..||||||+.+.+.--++
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999998843333
No 194
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=88.23 E-value=0.21 Score=48.77 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=20.2
Q ss_pred ceeeEEEeecCCCCchhHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQM 551 (819)
+..||+|+|..++|||||+.++
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l 49 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIV 49 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4689999999999999999986
No 195
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=88.12 E-value=0.25 Score=47.91 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.1
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
.++.|.|..||||||+.|.+.-.++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999865443
No 196
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.08 E-value=0.2 Score=48.00 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=18.0
Q ss_pred eEEEeecCCCCchhHHHHHH
Q 003444 533 KLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMK 552 (819)
-++|+|..||||||+++|+-
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47889999999999999985
No 197
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=88.06 E-value=0.24 Score=47.51 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.0
Q ss_pred eEEEeecCCCCchhHHHHHHH
Q 003444 533 KLLLVGCSGSGTSTIFKQAKI 553 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKI 553 (819)
+|.|.|..||||||+.|.+.-
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999998865
No 198
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.06 E-value=0.2 Score=47.38 Aligned_cols=36 Identities=3% Similarity=0.011 Sum_probs=31.4
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+++||++|+ .. +..|..++.+++++|||+|+++.
T Consensus 76 ~~~~l~Dt~G~-~~-~~~~~~~~~~~d~iilv~D~~~~ 111 (196)
T 2atv_A 76 VSMEILDTAGQ-ED-TIQREGHMRWGEGFVLVYDITDR 111 (196)
T ss_dssp EEEEEEECCCC-CC-CHHHHHHHHHCSEEEEEEETTCH
T ss_pred EEEEEEECCCC-Cc-ccchhhhhccCCEEEEEEECcCH
Confidence 67999999998 33 77899999999999999999863
No 199
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=88.02 E-value=0.24 Score=46.24 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=19.4
Q ss_pred eEEEeecCCCCchhHHHHHHHHh
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy 555 (819)
.|+|.|..||||||+.|.+.--+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999885433
No 200
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=87.99 E-value=0.48 Score=44.36 Aligned_cols=37 Identities=3% Similarity=0.018 Sum_probs=33.2
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+.+||++|+ ...+..|..++.+++++|||+|+++.
T Consensus 71 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~ 107 (189)
T 2gf9_A 71 IKLQIWDTAGQ-ERYRTITTAYYRGAMGFLLMYDIANQ 107 (189)
T ss_dssp EEEEEEECCSC-CSSCCSGGGGGTTCSEEEEEEETTCH
T ss_pred EEEEEEeCCCc-HHHhhhHHHhccCCCEEEEEEECCCH
Confidence 68999999998 67788899999999999999999864
No 201
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=87.98 E-value=0.2 Score=48.10 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=20.5
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
..|+|.|..||||||+.|.+.-.++
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999998854433
No 202
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=87.91 E-value=0.21 Score=47.86 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=19.4
Q ss_pred ceeeEEEeecCCCCchhHHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMK 552 (819)
.--.+.|+|+.||||||++|-+-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~ 54 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGML 54 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34468899999999999999874
No 203
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=87.89 E-value=0.22 Score=48.27 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=20.8
Q ss_pred ceeeEEEeecCCCCchhHHHHHHHHh
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMKILy 555 (819)
+..-++|.|++||||||+.|.+.-.+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34467899999999999999985443
No 204
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=87.88 E-value=0.22 Score=52.15 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.4
Q ss_pred ceeeEEEeecCCCCchhHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQM 551 (819)
-..||+|+|.+|+||||+++++
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L 38 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSL 38 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3579999999999999999985
No 205
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=87.87 E-value=0.2 Score=47.22 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.2
Q ss_pred eeeEEEeecCCCCchhHHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMK 552 (819)
..-++|+|+.|+||||++|.+-
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999884
No 206
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.78 E-value=0.36 Score=43.42 Aligned_cols=37 Identities=0% Similarity=0.054 Sum_probs=32.7
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++.
T Consensus 52 ~~~~~~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 88 (170)
T 1ek0_A 52 VKFEIWDTAGQ-ERFASLAPXYYRNAQAALVVYDVTKP 88 (170)
T ss_dssp EEEEEEEECCS-GGGGGGHHHHHTTCSEEEEEEETTCH
T ss_pred EEEEEEECCCC-hhhhhhhhhhhccCcEEEEEEecCCh
Confidence 68999999998 66777899999999999999999863
No 207
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=87.77 E-value=0.24 Score=48.08 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=20.9
Q ss_pred cceeeEEEeecCCCCchhHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQM 551 (819)
...+||+|+|..++|||||++++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l 33 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRF 33 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHH
T ss_pred CeeeEEEEECcCCCCHHHHHHHH
Confidence 55799999999999999999875
No 208
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=87.76 E-value=0.52 Score=44.31 Aligned_cols=37 Identities=3% Similarity=0.043 Sum_probs=32.9
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
+.+++||++|+ ...+..|..++.++++||||+|+++-
T Consensus 70 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~ 106 (191)
T 2a5j_A 70 IKLQIWDTAGQ-ESFRSITRSYYRGAAGALLVYDITRR 106 (191)
T ss_dssp EEEEEECCTTG-GGTSCCCHHHHTTCSEEEEEEETTCH
T ss_pred EEEEEEECCCc-hhhhhhHHHHhccCCEEEEEEECCCH
Confidence 68999999998 66777899999999999999999863
No 209
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=87.74 E-value=0.21 Score=50.54 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=20.8
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhcC
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYKA 557 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~p 557 (819)
-.+.|+|+.||||||++|-+-=+..|
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 45789999999999999987544443
No 210
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=87.70 E-value=0.21 Score=50.15 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=21.1
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
---+.|+|++||||||++|.+.=++.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34678999999999999998765554
No 211
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=87.67 E-value=0.23 Score=47.94 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=21.4
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
--.|+|+|..||||||+.|.+.-.++
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 44789999999999999998864444
No 212
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=87.66 E-value=0.25 Score=46.69 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=19.7
Q ss_pred eEEEeecCCCCchhHHHHHHHHh
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy 555 (819)
.|.|.|..||||||+.|.+.-.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58899999999999999886533
No 213
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.66 E-value=0.26 Score=51.06 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=21.4
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
..++.|+|..||||||++|-+-=+..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35789999999999999998764443
No 214
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=87.63 E-value=0.22 Score=46.72 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=19.9
Q ss_pred eEEEeecCCCCchhHHHHHHHHhc
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy~ 556 (819)
+++|.|..||||||+.|.+--.++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999998754333
No 215
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=87.63 E-value=0.38 Score=44.47 Aligned_cols=37 Identities=3% Similarity=0.032 Sum_probs=32.9
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++-
T Consensus 59 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 95 (186)
T 2bme_A 59 VKLQIWDTAGQ-ERFRSVTRSYYRGAAGALLVYDITSR 95 (186)
T ss_dssp EEEEEEEECCS-GGGHHHHHTTSTTCSEEEEEEETTCH
T ss_pred EEEEEEeCCCc-HHHHHHHHHHHhcCCEEEEEEECcCH
Confidence 68999999998 66777899999999999999999863
No 216
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=87.58 E-value=0.23 Score=49.86 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=19.7
Q ss_pred eEEEeecCCCCchhHHHHHHHHhc
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy~ 556 (819)
.+.|+|+.||||||++|-+-=+..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999998754443
No 217
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=87.53 E-value=0.36 Score=44.28 Aligned_cols=36 Identities=3% Similarity=0.126 Sum_probs=32.4
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSd 781 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++
T Consensus 61 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (181)
T 2efe_B 61 VKFEIWDTAGQ-ERYHSLAPMYYRGAAAAIIVFDVTN 96 (181)
T ss_dssp EEEEEEECCCS-GGGGGGTHHHHTTCSEEEEEEETTC
T ss_pred EEEEEEeCCCC-hhhhhhhHHHhccCCEEEEEEECCC
Confidence 68999999998 6677889999999999999999885
No 218
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=87.47 E-value=0.26 Score=50.00 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.2
Q ss_pred eeeEEEeecCCCCchhHHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMK 552 (819)
..|++|+|..++||||+++++-
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~ 24 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALT 24 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHh
Confidence 5799999999999999999874
No 219
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=87.45 E-value=0.27 Score=50.07 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=20.4
Q ss_pred hcceeeEEEeecCCCCchhHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
....+||+|+|..++||||++.++
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L 28 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSL 28 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHHHHH
Confidence 345789999999999999999985
No 220
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=87.44 E-value=0.53 Score=45.69 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=32.7
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSd 781 (819)
+.+++||++|+ ...+..|..+|.++++||||+|+++
T Consensus 75 ~~l~i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~ 110 (214)
T 3q3j_B 75 VELSLWDTSGS-PYYDNVRPLCYSDSDAVLLCFDISR 110 (214)
T ss_dssp EEEEEEEECCS-GGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred EEEEEEECCCC-HhHHHHHHHHcCCCeEEEEEEECcC
Confidence 68999999998 6677889999999999999999986
No 221
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=87.19 E-value=0.24 Score=48.44 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=20.0
Q ss_pred eEEEeecCCCCchhHHHHHHHHhc
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy~ 556 (819)
-+.|+|+.||||||++|.+.-.+.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSTT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 477899999999999998865554
No 222
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.13 E-value=0.26 Score=49.18 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=19.4
Q ss_pred eeEEEeecCCCCchhHHHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKIL 554 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKIL 554 (819)
-.+.|+|+.||||||++|-+--+
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999987544
No 223
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=87.09 E-value=0.3 Score=45.91 Aligned_cols=37 Identities=3% Similarity=0.071 Sum_probs=32.5
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
+.+.+||++|+ ...+..|..++.+++++|||+|+++.
T Consensus 62 ~~~~l~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~ 98 (206)
T 2bov_A 62 VQIDILDTAGQ-EDYAAIRDNYFRSGEGFLCVFSITEM 98 (206)
T ss_dssp EEEEEEECCCT-TCCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred EEEEEEcCCCh-hhhHHHHHHHHhhCCEEEEEEECCCH
Confidence 67999999998 66777888899999999999999864
No 224
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=87.03 E-value=0.27 Score=47.98 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=22.0
Q ss_pred ceeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
+...|+|.|..||||||+.|.+.-.++
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 446799999999999999998854444
No 225
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=87.01 E-value=0.23 Score=47.90 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=21.4
Q ss_pred HhcceeeEEEeecCCCCchhHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
..++..+++++|..++||||++.++
T Consensus 26 ~~~~~~~i~i~G~~g~GKTTl~~~l 50 (221)
T 2wsm_A 26 RESGTVAVNIMGAIGSGKTLLIERT 50 (221)
T ss_dssp HHHTCEEEEEEECTTSCHHHHHHHH
T ss_pred cccCceEEEEEcCCCCCHHHHHHHH
Confidence 3456789999999999999999876
No 226
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=86.99 E-value=0.29 Score=45.75 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=19.7
Q ss_pred eeEEEeecCCCCchhHHHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKIL 554 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKIL 554 (819)
..|+|.|..||||||+.|.+.-.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999998653
No 227
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=86.99 E-value=0.72 Score=44.75 Aligned_cols=37 Identities=5% Similarity=-0.006 Sum_probs=32.1
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
+.+++||++|+ ...+..|..++.+++++|||+|+++.
T Consensus 62 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~vilV~D~~~~ 98 (223)
T 3cpj_B 62 IKAQIWDTAGQ-ERYRAITSAYYRGAVGALIVYDISKS 98 (223)
T ss_dssp EEEEEECCTTT-TTTTCCCGGGTTTCCEEEEEEC-CCH
T ss_pred EEEEEEECCCc-cchhhhHHHHhccCCEEEEEEeCCCH
Confidence 68999999998 66788899999999999999998863
No 228
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=86.98 E-value=0.29 Score=45.22 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.4
Q ss_pred eEEEeecCCCCchhHHHHHHHHhc
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy~ 556 (819)
+|+|.|..+|||||+.|.+.-.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999998865443
No 229
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=86.94 E-value=0.23 Score=49.00 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=14.2
Q ss_pred eEEEeecCCCCchhHHHHHH-HHh
Q 003444 533 KLLLVGCSGSGTSTIFKQAK-ILY 555 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMK-ILy 555 (819)
-+.|+|+.||||||++|.+. -++
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 47899999999999999886 444
No 230
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.93 E-value=0.62 Score=44.10 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=32.9
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+.+||++|+ ...+..|..++.++++||||+|+++.
T Consensus 69 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~ 105 (213)
T 3cph_A 69 VKLQLWDTAGQ-ERFRTITTAYYRGAMGIILVYDVTDE 105 (213)
T ss_dssp EEEEEECCTTG-GGGTCCCHHHHTTCSEEEEEEETTCH
T ss_pred EEEEEEeCCCc-HHHHHHHHHHhccCCEEEEEEECCCH
Confidence 67999999998 66778899999999999999999864
No 231
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=86.93 E-value=0.28 Score=50.02 Aligned_cols=24 Identities=25% Similarity=0.606 Sum_probs=21.4
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
.+.+|++|+|..++||||++.++-
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~ 26 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALT 26 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 356899999999999999999873
No 232
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=86.91 E-value=0.42 Score=43.88 Aligned_cols=37 Identities=11% Similarity=0.054 Sum_probs=30.4
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
+.+++||++|+ ...+..|..++.+++++|||+|+++-
T Consensus 56 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 92 (182)
T 3bwd_D 56 VNLGLWDTAGQ-EDYNRLRPLSYRGADVFILAFSLISK 92 (182)
T ss_dssp --CEEECCCC--CTTTTTGGGGGTTCSEEEEEEETTCH
T ss_pred EEEEEEECCCC-hhhhhhHHhhccCCCEEEEEEECCCH
Confidence 67889999998 66788899999999999999998853
No 233
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=86.82 E-value=0.27 Score=50.22 Aligned_cols=26 Identities=38% Similarity=0.452 Sum_probs=21.1
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
--.+.|+|+.||||||++|-+-=++.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34688999999999999998854444
No 234
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=86.81 E-value=0.3 Score=47.50 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=20.3
Q ss_pred eEEEeecCCCCchhHHHHHHHHhc
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy~ 556 (819)
+|+|.|..||||||+.+.+.--++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999998865444
No 235
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=86.78 E-value=0.64 Score=43.29 Aligned_cols=37 Identities=3% Similarity=-0.036 Sum_probs=23.6
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+.+||++|+ ...+..|..++.+++++|||+++++-
T Consensus 69 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 105 (190)
T 3con_A 69 CLLDILDTAGQ-EEYSAMRDQYMRTGEGFLCVFAINNS 105 (190)
T ss_dssp EEEEEEECCC------------CTTCSEEEEEEETTCH
T ss_pred EEEEEEECCCh-HHHHHHHHHhhCcCCEEEEEEECcCH
Confidence 67999999998 56677888899999999999999863
No 236
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=86.73 E-value=0.27 Score=49.77 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=20.2
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHh
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy 555 (819)
--.+.|+|+.||||||++|-+-=++
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999874333
No 237
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=86.72 E-value=0.56 Score=42.28 Aligned_cols=37 Identities=8% Similarity=0.061 Sum_probs=32.7
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+.+||++|+ ...+..|..++.+++++|||+|+++.
T Consensus 52 ~~~~l~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 88 (170)
T 1g16_A 52 VKLQIWDTAGQ-ERFRTITTAYYRGAMGIILVYDITDE 88 (170)
T ss_dssp EEEEEECCTTG-GGTSCCCHHHHTTEEEEEEEEETTCH
T ss_pred EEEEEEeCCCC-hhhhhhHHHHhccCCEEEEEEECCCH
Confidence 68999999998 66777889999999999999999864
No 238
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=86.65 E-value=0.16 Score=48.78 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.5
Q ss_pred cceeeEEEeecCCCCchhHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQM 551 (819)
....||+|+|..++||||+++++
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l 49 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVL 49 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999999875
No 239
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=86.63 E-value=0.28 Score=49.74 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=20.9
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
--.+.|+|+.||||||++|-+-=++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34689999999999999998754443
No 240
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=86.60 E-value=0.31 Score=45.06 Aligned_cols=37 Identities=3% Similarity=-0.025 Sum_probs=32.1
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++-
T Consensus 66 ~~l~i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 102 (183)
T 3kkq_A 66 AILDVLDTAGQ-EEFSAMREQYMRTGDGFLIVYSVTDK 102 (183)
T ss_dssp EEEEEEECCSC-GGGCSSHHHHHHHCSEEEEEEETTCH
T ss_pred EEEEEEECCCc-hhhHHHHHHHHhcCCEEEEEEECCCH
Confidence 56888999998 66778888899999999999999863
No 241
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=86.59 E-value=0.31 Score=49.18 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=20.2
Q ss_pred hcceeeEEEeecCCCCchhHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
....+||+|+|..++||||++..+
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l 41 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSI 41 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHH
Confidence 345799999999999999999865
No 242
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.55 E-value=0.27 Score=50.65 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=21.4
Q ss_pred ceeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
.--.++|+|+.||||||++|-+--++.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 344689999999999999998754443
No 243
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=86.54 E-value=0.57 Score=44.71 Aligned_cols=37 Identities=14% Similarity=0.110 Sum_probs=31.1
Q ss_pred ccEEEEEeccccccccc-ccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENC-KWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERk-KWi~~FEdVtaVIFvVSLSdY 782 (819)
..+++||++|+ ...+. -|..++.+++++|||+|.+++
T Consensus 54 ~~~~i~Dt~G~-~~~~~~~~~~~~~~~~~~i~v~d~~~~ 91 (214)
T 2fh5_B 54 NSLTLIDLPGH-ESLRFQLLDRFKSSARAVVFVVDSAAF 91 (214)
T ss_dssp CEEEEEECCCC-HHHHHHHHHHHGGGEEEEEEEEETTTH
T ss_pred cEEEEEECCCC-hhHHHHHHHHHHhhCCEEEEEEECCCc
Confidence 68999999998 44555 588889999999999998864
No 244
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=86.53 E-value=0.28 Score=52.23 Aligned_cols=27 Identities=15% Similarity=0.409 Sum_probs=23.4
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhcC
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYKA 557 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~p 557 (819)
.-|+.|+|+.||||||++|.+-=++.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999998777763
No 245
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=86.51 E-value=0.3 Score=45.94 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=19.5
Q ss_pred eeEEEeecCCCCchhHHHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKIL 554 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKIL 554 (819)
..|+|.|..||||||+.|.+.-.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999988433
No 246
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=86.50 E-value=0.36 Score=45.37 Aligned_cols=26 Identities=12% Similarity=0.240 Sum_probs=20.7
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
..-|+|.|..||||||+.|.+.--++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34688999999999999998854333
No 247
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.48 E-value=0.27 Score=49.79 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=20.1
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
-.+.|+|+.||||||++|-+-=++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3578999999999999998754443
No 248
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.46 E-value=0.28 Score=46.95 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=18.7
Q ss_pred eEEEeecCCCCchhHHHHHHH
Q 003444 533 KLLLVGCSGSGTSTIFKQAKI 553 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKI 553 (819)
-++|+|.+||||||+++|+=.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999843
No 249
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=86.42 E-value=0.33 Score=46.67 Aligned_cols=21 Identities=33% Similarity=0.264 Sum_probs=18.6
Q ss_pred eEEEeecCCCCchhHHHHHHH
Q 003444 533 KLLLVGCSGSGTSTIFKQAKI 553 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKI 553 (819)
.+.|+|..||||||+.|.+.-
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998864
No 250
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=86.42 E-value=0.27 Score=50.06 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=20.5
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
-.+.|+|+.||||||++|-+-=+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4578999999999999998764444
No 251
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=86.39 E-value=1.1 Score=45.61 Aligned_cols=36 Identities=8% Similarity=0.115 Sum_probs=32.1
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSd 781 (819)
+.+++||++|+ ...+..|..++.+++++|||+|+++
T Consensus 203 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~ 238 (332)
T 2wkq_A 203 VNLGLWDTAGL-EDYDRLRPLSYPQTDVFLICFSLVS 238 (332)
T ss_dssp EEEEEEEECCC-GGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred EEEEEEeCCCc-hhhhHHHHHhccCCCEEEEEEeCCC
Confidence 57789999998 6677889999999999999999986
No 252
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=86.39 E-value=0.28 Score=49.31 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=19.5
Q ss_pred eeEEEeecCCCCchhHHHHHHHHh
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy 555 (819)
-.+.|+|+.||||||++|-+-=+.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999874333
No 253
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.31 E-value=0.28 Score=50.00 Aligned_cols=23 Identities=30% Similarity=0.216 Sum_probs=19.2
Q ss_pred eeEEEeecCCCCchhHHHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKIL 554 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKIL 554 (819)
-.+.|+|+.||||||++|-+-=+
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999987543
No 254
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=86.29 E-value=0.71 Score=43.11 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=32.4
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++-
T Consensus 55 ~~~~i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~ 91 (184)
T 1m7b_A 55 IELSLWDTSGS-PYYDNVRPLSYPDSDAVLICFDISRP 91 (184)
T ss_dssp EEEEEEEECCS-GGGTTTGGGGCTTCSEEEEEEETTCH
T ss_pred EEEEEEECCCC-hhhhhhHHhhcCCCcEEEEEEECCCH
Confidence 68999999998 56677888899999999999999863
No 255
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=86.27 E-value=0.36 Score=45.59 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=21.9
Q ss_pred ceeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
....|+|.|..||||||+.|.+.-.++
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345789999999999999998865444
No 256
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=86.27 E-value=0.28 Score=50.19 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=19.9
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
-.+.|+|+.||||||++|-+-=+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3578999999999999998754433
No 257
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=86.27 E-value=0.32 Score=45.51 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=19.7
Q ss_pred eeEEEeecCCCCchhHHHHHHHHh
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy 555 (819)
..|+|.|..+|||||+.|.+.-.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999875433
No 258
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=86.23 E-value=0.35 Score=45.96 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=21.0
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
..|+|.|..||||||+.|.+.-.++
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999865443
No 259
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=86.19 E-value=0.28 Score=51.14 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=20.8
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
--.+.|+|+.||||||++|-+-=+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 34578999999999999998854443
No 260
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=86.16 E-value=0.34 Score=48.38 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=20.3
Q ss_pred hcceeeEEEeecCCCCchhHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
.....||+|+|..++||||++.++
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l 42 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSI 42 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHH
Confidence 345789999999999999999876
No 261
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=86.07 E-value=0.14 Score=48.67 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.4
Q ss_pred cceeeEEEeecCCCCchhHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQM 551 (819)
...+||+|+|..++|||||++++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l 53 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRF 53 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSS
T ss_pred CcceEEEEECCCCCCHHHHHHHH
Confidence 45799999999999999998764
No 262
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=86.06 E-value=0.31 Score=49.02 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=20.0
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHh
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy 555 (819)
--.+.|+|+.||||||++|-+-=++
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999874333
No 263
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=86.04 E-value=0.61 Score=42.60 Aligned_cols=36 Identities=14% Similarity=0.090 Sum_probs=31.6
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSd 781 (819)
..+++||++|+ ...+..|..++..++++|||+|+++
T Consensus 55 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~ 90 (178)
T 2lkc_A 55 KKITFLDTPGH-EAFTTMRARGAQVTDIVILVVAADD 90 (178)
T ss_dssp EEEEESCCCSS-SSSSCSCCSSCCCCCEEEEEEETTC
T ss_pred ceEEEEECCCC-HHHHHHHHHHHhhCCEEEEEEECCC
Confidence 46889999998 6778889999999999999999876
No 264
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=86.01 E-value=0.5 Score=44.28 Aligned_cols=37 Identities=5% Similarity=-0.027 Sum_probs=32.9
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++.
T Consensus 74 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~vi~v~D~~~~ 110 (193)
T 2oil_A 74 VKAQIWDTAGL-ERYRAITSAYYRGAVGALLVFDLTKH 110 (193)
T ss_dssp EEEEEEEESCC-CTTCTTHHHHHTTCCEEEEEEETTCH
T ss_pred EEEEEEeCCCc-hhhhhhhHHHhccCCEEEEEEECCCH
Confidence 68999999998 66778899999999999999999863
No 265
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=85.97 E-value=0.3 Score=50.30 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=19.6
Q ss_pred eEEEeecCCCCchhHHHHHHHHhc
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy~ 556 (819)
-+.|+|+.||||||++|-+-=+..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 468999999999999998754443
No 266
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.87 E-value=0.39 Score=45.12 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=21.0
Q ss_pred eEEEeecCCCCchhHHHHHHHHhc
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy~ 556 (819)
-.+|+|..|||||||++-+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 458999999999999999987765
No 267
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=85.74 E-value=0.42 Score=48.11 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=22.9
Q ss_pred cceeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
++..+|+|+|..||||||+.+.+.=-++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4667899999999999999998854333
No 268
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=85.72 E-value=0.42 Score=48.33 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.5
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
.+.+||+|+|..++||||++..+.
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~ 57 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLI 57 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999999864
No 269
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=85.68 E-value=0.47 Score=44.80 Aligned_cols=37 Identities=5% Similarity=-0.010 Sum_probs=32.8
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++-
T Consensus 57 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~ 93 (203)
T 1zbd_A 57 IKLQIWDTAGL-ERYRTITTAYYRGAMGFILMYDITNE 93 (203)
T ss_dssp EEEEEEEECCS-GGGHHHHHTTGGGCSEEEEEEETTCH
T ss_pred EEEEEEECCCc-hhhcchHHHhhcCCCEEEEEEECcCH
Confidence 68999999998 66777899999999999999999863
No 270
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=85.67 E-value=0.31 Score=49.96 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=19.5
Q ss_pred eeEEEeecCCCCchhHHHHHHHHh
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy 555 (819)
-.+.|+|+.||||||++|-+-=+.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 357899999999999999874333
No 271
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=85.65 E-value=0.35 Score=45.58 Aligned_cols=24 Identities=42% Similarity=0.472 Sum_probs=20.2
Q ss_pred eEEEeecCCCCchhHHHHHHHHhc
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy~ 556 (819)
.|+|.|..||||||+.|.+.-.++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999998865444
No 272
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.61 E-value=0.32 Score=50.13 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=20.0
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
-.+.|+|+.||||||++|-+-=+..
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3578999999999999998754433
No 273
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=85.57 E-value=0.33 Score=49.85 Aligned_cols=25 Identities=44% Similarity=0.465 Sum_probs=20.2
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHh
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy 555 (819)
--.+.|+|+.||||||++|-+-=++
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3468899999999999999874333
No 274
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=85.56 E-value=0.35 Score=50.02 Aligned_cols=23 Identities=22% Similarity=0.580 Sum_probs=20.3
Q ss_pred ceeeEEEeecCCCCchhHHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMK 552 (819)
+..|++|+|.+++||||+|+++-
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~ 24 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLIT 24 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 35799999999999999999974
No 275
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=85.52 E-value=0.34 Score=45.57 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=20.7
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
...|+|.|..||||||+.|.+.-.++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999998853333
No 276
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=85.49 E-value=0.42 Score=45.02 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=21.7
Q ss_pred ceeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
+...|+|.|..||||||+.|.+.-.++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345789999999999999999864333
No 277
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=85.49 E-value=0.33 Score=49.79 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.0
Q ss_pred eeEEEeecCCCCchhHHHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKIL 554 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKIL 554 (819)
-.+.|+|+.||||||++|-+-=+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999977433
No 278
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=85.48 E-value=0.35 Score=44.02 Aligned_cols=37 Identities=3% Similarity=0.034 Sum_probs=32.8
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+.+||++|+ ...+..|..++.+++++|||+|+++.
T Consensus 64 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 100 (179)
T 1z0f_A 64 IKLQIWDTAGQ-ERFRAVTRSYYRGAAGALMVYDITRR 100 (179)
T ss_dssp EEEEEEECTTG-GGTCHHHHHHHHTCSEEEEEEETTCH
T ss_pred EEEEEEECCCC-hHhhhhHHHHhccCCEEEEEEeCcCH
Confidence 68999999998 66777899999999999999999864
No 279
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=85.47 E-value=0.34 Score=50.17 Aligned_cols=25 Identities=40% Similarity=0.519 Sum_probs=20.6
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
-.+.|+|+.||||||++|-+-=++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678999999999999998754544
No 280
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=85.47 E-value=0.32 Score=50.29 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=20.4
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
-.+.|+|+.||||||++|-+-=++.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4578999999999999998764444
No 281
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=85.41 E-value=0.32 Score=46.60 Aligned_cols=37 Identities=5% Similarity=0.047 Sum_probs=32.7
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++-
T Consensus 78 ~~l~i~Dt~G~-~~~~~~~~~~~~~~d~iilv~D~~~~ 114 (201)
T 2hup_A 78 VKLQIWDTAGQ-ERFRTITQSYYRSANGAILAYDITKR 114 (201)
T ss_dssp EEEEEECCTTC-GGGHHHHHHHHTTCSEEEEEEETTBH
T ss_pred EEEEEEECCCc-HhHHHHHHHHHhhCCEEEEEEECCCH
Confidence 68999999998 56777899999999999999999863
No 282
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=85.37 E-value=0.32 Score=49.06 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=22.0
Q ss_pred ceeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
....++|.|..||||||+.|.+.-.++
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346789999999999999999865443
No 283
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=85.32 E-value=0.39 Score=44.78 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=20.2
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
..|+|.|..||||||+.|.+.-.++
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999998854333
No 284
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=85.25 E-value=0.46 Score=48.20 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.2
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
...+||+|+|..++||||++..+-
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~ 60 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSII 60 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999999999763
No 285
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=85.24 E-value=0.19 Score=52.26 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=19.9
Q ss_pred ceeeEEEeecCCCCchhHHHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAKI 553 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMKI 553 (819)
+..-++|.|++||||||+.|.+.-
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999998753
No 286
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=85.22 E-value=0.4 Score=45.78 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=20.5
Q ss_pred eeeEEEeecCCCCchhHHHHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKIL 554 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKIL 554 (819)
...|+|.|..||||||+.|.+.-.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 356999999999999999988654
No 287
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=85.22 E-value=0.44 Score=45.89 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.2
Q ss_pred eeeEEEeecCCCCchhHHHHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKIL 554 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKIL 554 (819)
...+.|.|..||||||+++.+.-.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 356889999999999999988644
No 288
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=85.21 E-value=0.39 Score=47.20 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=20.7
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHh
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy 555 (819)
...|+|.|..||||||+.|.+.--+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999885333
No 289
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=85.20 E-value=0.36 Score=50.00 Aligned_cols=23 Identities=30% Similarity=0.639 Sum_probs=19.4
Q ss_pred eeEEEeecCCCCchhHHHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKIL 554 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKIL 554 (819)
-.+.|+|+.||||||++|-+-=+
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999987433
No 290
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.18 E-value=0.79 Score=43.83 Aligned_cols=37 Identities=8% Similarity=0.186 Sum_probs=32.8
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++.
T Consensus 73 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 109 (207)
T 2fv8_A 73 VELALWDTAGQ-EDYDRLRPLSYPDTDVILMCFSVDSP 109 (207)
T ss_dssp EEEEEEECTTC-TTCTTTGGGGCTTCCEEEEEEETTCH
T ss_pred EEEEEEECCCc-HHHHHHHHhhcCCCCEEEEEEECCCH
Confidence 68999999998 66778899999999999999999864
No 291
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=85.17 E-value=0.34 Score=49.88 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=20.0
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
-.+.|+|+.||||||++|-+-=+..
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3578999999999999998754433
No 292
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=85.11 E-value=0.34 Score=50.11 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=20.2
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
-.+.|+|+.||||||++|-+-=+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 3578999999999999998754444
No 293
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=85.09 E-value=0.46 Score=45.00 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=20.5
Q ss_pred eeeEEEeecCCCCchhHHHHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKIL 554 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKIL 554 (819)
...|.|.|..||||||+.|.+.-.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 457899999999999999988654
No 294
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=85.07 E-value=0.36 Score=45.09 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=16.2
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
..|+|.|..||||||+.|.+.-.++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4588999999999999998854333
No 295
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=85.06 E-value=0.41 Score=45.94 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=22.5
Q ss_pred cceeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
.....|+|.|..+|||||+.|.+.-.++
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456799999999999999998865444
No 296
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=85.06 E-value=0.36 Score=46.94 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=18.9
Q ss_pred eEEEeecCCCCchhHHHHHHH
Q 003444 533 KLLLVGCSGSGTSTIFKQAKI 553 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKI 553 (819)
-++|+|.++|||||+++|+=.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999865
No 297
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=84.97 E-value=0.35 Score=49.87 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=19.1
Q ss_pred eeEEEeecCCCCchhHHHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKIL 554 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKIL 554 (819)
-.+.|+|+.||||||++|-+-=+
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999977543
No 298
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=84.94 E-value=0.53 Score=42.81 Aligned_cols=36 Identities=11% Similarity=0.119 Sum_probs=32.2
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSd 781 (819)
..+.+||++|+ ...+..|..++.+++++|||+|+++
T Consensus 63 ~~~~~~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~ 98 (179)
T 2y8e_A 63 VRLQLWDTAGQ-ERFRSLIPSYIRDSTVAVVVYDITN 98 (179)
T ss_dssp EEEEEEEECCS-GGGGGGSHHHHHTCSEEEEEEETTC
T ss_pred EEEEEEECCCc-HHHHHHHHHHhcCCCEEEEEEECCC
Confidence 68999999998 6677888889999999999999986
No 299
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=84.83 E-value=0.46 Score=45.43 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=20.9
Q ss_pred ceeeEEEeecCCCCchhHHHHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAKIL 554 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMKIL 554 (819)
+...|+|.|..||||||+.+.+.-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999988643
No 300
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=84.81 E-value=0.45 Score=45.48 Aligned_cols=24 Identities=25% Similarity=0.113 Sum_probs=20.4
Q ss_pred eeeEEEeecCCCCchhHHHHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKIL 554 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKIL 554 (819)
...|+|.|..||||||+.+.+.-.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 456899999999999999988643
No 301
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=84.80 E-value=0.38 Score=50.15 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=20.4
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
--.+.|+|+.||||||++|-+-=+..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34678999999999999997754433
No 302
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=84.79 E-value=0.88 Score=44.03 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=32.5
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
+.+++||++|+ ...+..|..+|.+++++|||+|+++-
T Consensus 76 ~~l~i~Dt~G~-~~~~~~~~~~~~~~d~~ilv~D~~~~ 112 (205)
T 1gwn_A 76 IELSLWDTSGS-PYYDNVRPLSYPDSDAVLICFDISRP 112 (205)
T ss_dssp EEEEEEEECCS-GGGTTTGGGGCTTCSEEEEEEETTCH
T ss_pred EEEEEEeCCCc-HhhhHHHHhhccCCCEEEEEEECCCH
Confidence 68999999998 56677888899999999999999863
No 303
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=84.74 E-value=0.41 Score=44.27 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=20.0
Q ss_pred eEEEeecCCCCchhHHHHHHHHhc
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy~ 556 (819)
.|+|.|..||||||+.|.+.-.++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999998865433
No 304
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=84.71 E-value=0.39 Score=49.13 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=19.7
Q ss_pred eEEEeecCCCCchhHHHHHHHHh
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy 555 (819)
-++|+|..|+||||+++|+=.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 47899999999999999986554
No 305
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=84.71 E-value=0.44 Score=44.63 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=18.9
Q ss_pred eEEEeecCCCCchhHHHHHHHH
Q 003444 533 KLLLVGCSGSGTSTIFKQAKIL 554 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKIL 554 (819)
.|.|.|..||||||+.+.+.-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988543
No 306
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=84.70 E-value=0.43 Score=49.74 Aligned_cols=22 Identities=45% Similarity=0.513 Sum_probs=19.8
Q ss_pred ceeeEEEeecCCCCchhHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQM 551 (819)
..+||+|+|.+++||||+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l 23 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSII 23 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHH
Confidence 3589999999999999999975
No 307
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=84.58 E-value=0.7 Score=43.96 Aligned_cols=37 Identities=8% Similarity=0.195 Sum_probs=32.7
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++-
T Consensus 73 ~~l~i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 109 (201)
T 2gco_A 73 VELALWDTAGQ-EDYDRLRPLSYPDTDVILMCFSIDSP 109 (201)
T ss_dssp EEEEEECCCCS-GGGTTTGGGGCTTCSEEEEEEETTCH
T ss_pred EEEEEEECCCc-hhHHHHHHHhcCCCCEEEEEEECCCH
Confidence 68999999998 66778899999999999999998863
No 308
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=84.55 E-value=0.45 Score=45.12 Aligned_cols=37 Identities=8% Similarity=0.066 Sum_probs=30.0
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+.+||++|+ ...+..|..++.++++||||+|+++.
T Consensus 82 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 118 (199)
T 3l0i_B 82 IKLQIWDTAGQ-ERFRTITSSYYRGAHGIIVVYDVTDQ 118 (199)
T ss_dssp EEEEEECCTTC-TTCCCCSCC--CCCSEEEECC-CCCS
T ss_pred EEEEEEECCCc-HhHHHHHHHHhhcCCEEEEEEECCCH
Confidence 67999999998 67788899999999999999998863
No 309
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=84.39 E-value=0.34 Score=45.91 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=19.5
Q ss_pred ceeeEEEeecCCCCchhHHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMK 552 (819)
+..-++|.|..||||||+.|.+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 34568899999999999999874
No 310
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=84.26 E-value=0.84 Score=47.55 Aligned_cols=37 Identities=8% Similarity=0.048 Sum_probs=31.8
Q ss_pred ccEEEEEeccccccc-----ccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGE-----NCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsE-----RkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+++||++|+ ... +..|..+|.+++++|||+|.++-
T Consensus 52 ~~l~i~Dt~G~-~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~ 93 (307)
T 3r7w_A 52 MTLNLWDCGGQ-DVFMENYFTKQKDHIFQMVQVLIHVFDVEST 93 (307)
T ss_dssp EEEEEEEECCS-HHHHHHHHTTTHHHHHTTCSEEEEEEETTCS
T ss_pred eEEEEEECCCc-HHHhhhhhhhHHHHHhccCCEEEEEEECCCh
Confidence 68999999998 444 56788899999999999999864
No 311
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=84.18 E-value=0.49 Score=47.31 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=21.9
Q ss_pred ceeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
.-..+.|+|..||||||++|.+.-+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345688999999999999998865444
No 312
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=84.14 E-value=0.2 Score=42.73 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=37.2
Q ss_pred CCcccCCCC-CccccceeeeecCCcccCCccc-----cccccCCCCccccccc
Q 003444 272 GSCYRCFKG-NRFTEKEVCIVCDAKYCCNCVL-----RAMGSMPEGRKCVTCI 318 (819)
Q Consensus 272 ~~c~~c~~~-~~~~~~~~cl~c~~~yc~~cv~-----~~mg~m~egrkc~~c~ 318 (819)
..|..|.+. +.+.-|+-|-.||..+|+.|-. ..+|...+-|-|..|.
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~ 64 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCF 64 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEEEEGGGTEEEEEEECHHHH
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCeEEcccCCCCCCCEECHHHH
Confidence 379999997 4455789999999999999964 3456666678898885
No 313
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=84.14 E-value=0.42 Score=51.31 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.6
Q ss_pred HhcceeeEEEeecCCCCchhHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
.....+||+|+|..++||||+++++
T Consensus 33 ~~~~~~~I~vvG~~g~GKSTLln~L 57 (361)
T 2qag_A 33 KKGFEFTLMVVGESGLGKSTLINSL 57 (361)
T ss_dssp HHCCEECEEECCCTTSCHHHHHHHH
T ss_pred cCCCCEEEEEEcCCCCCHHHHHHHH
Confidence 3445689999999999999999986
No 314
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=84.11 E-value=0.46 Score=44.76 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=19.9
Q ss_pred eeEEEeecCCCCchhHHHHHHHHh
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy 555 (819)
..+.|.|..||||||+.|.+.-..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999885443
No 315
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.09 E-value=0.75 Score=44.46 Aligned_cols=37 Identities=5% Similarity=0.042 Sum_probs=32.7
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
+.+++||++|+ ...+..|..++.+++++|||+|+++-
T Consensus 75 ~~l~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~ 111 (201)
T 2ew1_A 75 VKLQIWDTAGQ-ERFRSITQSYYRSANALILTYDITCE 111 (201)
T ss_dssp EEEEEEEECCS-GGGHHHHGGGSTTCSEEEEEEETTCH
T ss_pred EEEEEEECCCc-HHHHHHHHHHHhcCCEEEEEEECCCH
Confidence 68999999998 56677799999999999999999864
No 316
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=84.08 E-value=0.41 Score=47.02 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=17.8
Q ss_pred eEEEeecCCCCchhHHHHHH
Q 003444 533 KLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMK 552 (819)
++.|+|..||||||++|-+-
T Consensus 3 ~i~i~G~nG~GKTTll~~l~ 22 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 58899999999999998764
No 317
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=84.08 E-value=0.45 Score=46.47 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=21.0
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
...|+|.|..||||||+.|.+.--++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999998854333
No 318
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=84.08 E-value=0.43 Score=48.56 Aligned_cols=24 Identities=25% Similarity=0.144 Sum_probs=20.0
Q ss_pred eeEEEeecCCCCchhHHHHHHHHh
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy 555 (819)
--++|+|.++|||||+++|+=...
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999986433
No 319
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=84.03 E-value=1 Score=43.20 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=19.4
Q ss_pred HHhcceeeEEEeecCCCCchhHHHHH
Q 003444 526 IERRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 526 ~~~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
....+.+||+++|..++||||+++++
T Consensus 25 ~~~~~~~ki~vvG~~~~GKSsLi~~l 50 (204)
T 4gzl_A 25 YFQGQAIKCVVVGDGAVGKTCLLISY 50 (204)
T ss_dssp -----CEEEEEEESTTSSHHHHHHHH
T ss_pred hhcCCeEEEEEECcCCCCHHHHHHHH
Confidence 34466899999999999999999654
No 320
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=83.98 E-value=0.56 Score=45.92 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=21.3
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
-.+|+|.|..+|||||+.+.+.--++
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36799999999999999998854443
No 321
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=83.92 E-value=0.59 Score=47.52 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.2
Q ss_pred HhcceeeEEEeecCCCCchhHHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
..+..+|++++|..++||||++.++.
T Consensus 151 ~~~~~~~i~i~G~~~~GKssli~~~~ 176 (332)
T 2wkq_A 151 AAKELIKCVVVGDGAVGKTCLLISYT 176 (332)
T ss_dssp HHTTCEEEEEEESTTSSHHHHHHHHH
T ss_pred cccceeEEEEECCCCCChHHHHHHHH
Confidence 34567999999999999999998764
No 322
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=83.86 E-value=0.73 Score=43.43 Aligned_cols=37 Identities=0% Similarity=-0.000 Sum_probs=32.9
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+.+||++|+ ...+..|..++.+++++|||+|+++-
T Consensus 72 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~iilV~d~~~~ 108 (192)
T 2fg5_A 72 HKFLIWDTAGQ-ERFHSLAPMYYRGSAAAVIVYDITKQ 108 (192)
T ss_dssp EEEEEEEECCS-GGGGGGTHHHHTTCSEEEEEEETTCT
T ss_pred EEEEEEcCCCc-hhhHhhhHHhhccCCEEEEEEeCCCH
Confidence 68999999998 66778899999999999999998864
No 323
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=83.82 E-value=0.55 Score=44.91 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=20.7
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
...|+|.|..||||||+.|.+.--++
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34688999999999999988853333
No 324
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=83.79 E-value=0.48 Score=52.24 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=21.8
Q ss_pred HhcceeeEEEeecCCCCchhHHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
..++.+|++|+|.+++|||||+.++.
T Consensus 318 ~~~~~~ki~lvG~~nvGKSsLl~~l~ 343 (497)
T 3lvq_E 318 LSNKEMRILMLGLDAAGKTTILYKLK 343 (497)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred ccccceeEEEEcCCCCCHHHHHHHHh
Confidence 34567999999999999999999874
No 325
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=83.77 E-value=0.52 Score=45.68 Aligned_cols=26 Identities=27% Similarity=0.153 Sum_probs=21.2
Q ss_pred ceeeEEEeecCCCCchhHHHHHHHHh
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMKILy 555 (819)
+...+.|.|..||||||+++.+.-+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999876443
No 326
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=83.71 E-value=0.69 Score=44.30 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=22.2
Q ss_pred HHHhcceeeEEEeecCCCCchhHHHHHH
Q 003444 525 YIERRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 525 k~~~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
........-+||.|+.|+||||+++++-
T Consensus 46 ~~~~~~~~~~ll~G~~G~GKT~la~~l~ 73 (242)
T 3bos_A 46 AASGDGVQAIYLWGPVKSGRTHLIHAAC 73 (242)
T ss_dssp HHHTCSCSEEEEECSTTSSHHHHHHHHH
T ss_pred HHhCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 3333356789999999999999999873
No 327
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=83.69 E-value=0.48 Score=51.26 Aligned_cols=36 Identities=11% Similarity=0.409 Sum_probs=29.6
Q ss_pred ccEEEEEeccccccccc-cc--ccccCCCCEEEEEEeCCC
Q 003444 745 LRYQLIRVQARGLGENC-KW--LEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 745 l~frLiDVGGQgrsERk-KW--i~~FEdVtaVIFvVSLSd 781 (819)
+++++||++|| ...|. .| .+||.+++++|||+|+++
T Consensus 46 v~LqIWDTAGQ-Erf~~~~l~~~~yyr~a~~~IlV~Ditd 84 (331)
T 3r7w_B 46 IDLAVMELPGQ-LNYFEPSYDSERLFKSVGALVYVIDSQD 84 (331)
T ss_dssp SCEEEEECCSC-SSSCCCSHHHHHHHTTCSEEEEECCCSS
T ss_pred EEEEEEECCCc-hhccchhhhhhhhccCCCEEEEEEECCc
Confidence 68999999999 44443 24 789999999999999886
No 328
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=83.68 E-value=0.51 Score=44.82 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=20.5
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHh
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy 555 (819)
-..|.|.|..||||||+.|.+.-.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999876443
No 329
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=83.65 E-value=0.72 Score=44.47 Aligned_cols=37 Identities=3% Similarity=0.014 Sum_probs=32.9
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++.
T Consensus 64 ~~~~i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (221)
T 3gj0_A 64 IKFNVWDTAGQ-EKFGGLRDGYYIQAQCAIIMFDVTSR 100 (221)
T ss_dssp EEEEEEEECSG-GGTSCCCHHHHTTCCEEEEEEETTCH
T ss_pred EEEEEEeCCCh-HHHhHHHHHHHhcCCEEEEEEECCCH
Confidence 68999999998 66778899999999999999999863
No 330
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=83.64 E-value=0.58 Score=41.62 Aligned_cols=37 Identities=3% Similarity=-0.036 Sum_probs=31.6
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+.+||++|+ ...+..|..++..++++|||+++++-
T Consensus 51 ~~~~~~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~ 87 (166)
T 2ce2_X 51 CLLDILDTAGQ-EEYSAMRDQYMRTGEGFLCVFAINNT 87 (166)
T ss_dssp EEEEEEECCCC-SSCCHHHHHHHHHCSEEEEEEETTCH
T ss_pred EEEEEEECCCc-hhhhHHHHHhhccCCEEEEEEECCCH
Confidence 67899999998 55677788899999999999998853
No 331
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=83.61 E-value=0.47 Score=49.81 Aligned_cols=21 Identities=24% Similarity=0.494 Sum_probs=18.5
Q ss_pred eeEEEeecCCCCchhHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMK 552 (819)
-.+.|+|+.||||||++|-+-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 467899999999999999774
No 332
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=83.55 E-value=0.49 Score=43.95 Aligned_cols=26 Identities=35% Similarity=0.626 Sum_probs=20.5
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
-+-|+|.|..||||||+.|.+.-.++
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34678999999999999998865433
No 333
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=83.40 E-value=0.51 Score=44.48 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=19.2
Q ss_pred eEEEeecCCCCchhHHHHHHHHh
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy 555 (819)
-|.|.|..||||||+.|.+.=.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37889999999999999885443
No 334
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=83.40 E-value=2 Score=40.39 Aligned_cols=35 Identities=0% Similarity=-0.019 Sum_probs=27.2
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSd 781 (819)
+.+++||++|+ ...+ .|..++.+++++|+|+|+++
T Consensus 69 ~~l~i~Dt~G~-~~~~-~~~~~~~~~~~~ilv~d~~~ 103 (187)
T 3c5c_A 69 VHLRVMDTADL-DTPR-NCERYLNWAHAFLVVYSVDS 103 (187)
T ss_dssp EEEEEEECCC----CC-CTHHHHTTCSEEEEEEETTC
T ss_pred EEEEEEECCCC-Ccch-hHHHHHhhCCEEEEEEECCC
Confidence 68999999998 3333 36778899999999999985
No 335
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=83.38 E-value=0.48 Score=47.90 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.2
Q ss_pred eeeEEEeecCCCCchhHHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMK 552 (819)
-..+.|+|..||||||++|.+-
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999999874
No 336
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=83.38 E-value=0.32 Score=45.45 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=30.0
Q ss_pred ccEEEEEecccccccccccccccCC----CCEEEEEEeCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFED----IGMVIFCVALS 780 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEd----VtaVIFvVSLS 780 (819)
..+.+||++|+ ...+..|..++.+ ++++|||+|.+
T Consensus 91 ~~~~l~Dt~G~-~~~~~~~~~~~~~~~~~~~~~i~v~d~~ 129 (193)
T 2ged_A 91 SGVTLVDFPGH-VKLRYKLSDYLKTRAKFVKGLIFMVDST 129 (193)
T ss_dssp TTCSEEEETTC-CBSSCCHHHHHHHHGGGEEEEEEEEETT
T ss_pred CeEEEEECCCC-chHHHHHHHHHHhhcccCCEEEEEEECC
Confidence 57889999998 6677888888876 89999999988
No 337
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=83.37 E-value=0.55 Score=47.38 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.8
Q ss_pred hcceeeEEEeecC---------CCCchhHHHHHH
Q 003444 528 RRTLQKLLLVGCS---------GSGTSTIFKQAK 552 (819)
Q Consensus 528 ~k~~vKLLLLGaG---------ESGKSTIlKQMK 552 (819)
....+||+|+|.. ++|||||++++.
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~ 49 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFV 49 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHH
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHH
Confidence 3457999999999 999999999864
No 338
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=83.31 E-value=0.54 Score=48.21 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.2
Q ss_pred ceeeEEEeecCCCCchhHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQM 551 (819)
+.+|++|+|..++||||++.++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l 23 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQL 23 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHH
Confidence 3589999999999999999987
No 339
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=83.28 E-value=0.7 Score=42.57 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.8
Q ss_pred cceeeEEEeecCCCCchhHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQM 551 (819)
+..+||+++|..++|||||+..+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l 27 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRL 27 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHH
Confidence 45799999999999999999975
No 340
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=83.17 E-value=0.63 Score=41.87 Aligned_cols=37 Identities=8% Similarity=0.083 Sum_probs=32.4
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+.+||++|+ ...+..|..++.+++++|||+|+++-
T Consensus 54 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 90 (168)
T 1z2a_A 54 VRLMLWDTAGQ-EEFDAITKAYYRGAQACVLVFSTTDR 90 (168)
T ss_dssp EEEEEECCTTG-GGTTCCCHHHHTTCCEEEEEEETTCH
T ss_pred EEEEEEcCCCc-HhHHHHHHHHhcCCCEEEEEEECcCH
Confidence 68999999998 56677888899999999999999863
No 341
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=83.06 E-value=0.46 Score=50.14 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.0
Q ss_pred HhcceeeEEEeecCCCCchhHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
..++.+||+|+|..++|||||+.++
T Consensus 161 ~~~~~~kI~ivG~~~vGKSsLl~~l 185 (329)
T 3o47_A 161 FGKKEMRILMVGLDAAGKTTILYKL 185 (329)
T ss_dssp --CCSEEEEEEESTTSSHHHHHHHT
T ss_pred cccCcceEEEECCCCccHHHHHHHH
Confidence 3456899999999999999999875
No 342
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=83.02 E-value=0.48 Score=48.09 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=17.0
Q ss_pred EEEeecCCCCchhHHHHHH
Q 003444 534 LLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 534 LLLLGaGESGKSTIlKQMK 552 (819)
++|.|..||||||+.+++-
T Consensus 4 i~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 6789999999999999873
No 343
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=82.88 E-value=0.35 Score=46.97 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=22.5
Q ss_pred eEEEeecCCCCchhHHHHHHHHhcCCCC
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILYKAVPF 560 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy~p~GF 560 (819)
.+.++|..+|||||+++.+--++.+.++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~ 31 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGL 31 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCC
Confidence 5789999999999999988666654544
No 344
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=82.82 E-value=0.44 Score=45.06 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=33.1
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCcc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYD 783 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYD 783 (819)
+.+.+||++|+ ...+..|..++.++++||||+|+++-+
T Consensus 75 ~~l~l~Dt~G~-~~~~~~~~~~~~~~d~iilV~D~~~~~ 112 (192)
T 2il1_A 75 IRLQIWDTAGQ-ERFNSITSAYYRSAKGIILVYDITKKE 112 (192)
T ss_dssp EEEEEEEECCS-GGGHHHHHHHHHHCSEEEEEEETTCHH
T ss_pred EEEEEEeCCCc-HHHHHHHHHHhcCCCEEEEEEECcCHH
Confidence 68999999998 566778999999999999999998643
No 345
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=82.77 E-value=0.91 Score=40.86 Aligned_cols=37 Identities=3% Similarity=-0.039 Sum_probs=32.4
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+.+||++|+ ...+..|..++.+++++|||+|+++-
T Consensus 55 ~~~~~~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~ 91 (170)
T 1z0j_A 55 HKFLIWDTAGL-ERFRALAPMYYRGSAAAIIVYDITKE 91 (170)
T ss_dssp EEEEEEEECCS-GGGGGGTHHHHTTCSEEEEEEETTCH
T ss_pred EEEEEEcCCCc-hhhhcccHhhCcCCCEEEEEEECcCH
Confidence 67999999998 66777888899999999999999863
No 346
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=82.69 E-value=0.26 Score=43.02 Aligned_cols=48 Identities=21% Similarity=0.461 Sum_probs=38.3
Q ss_pred CCCcccCCCC-CccccceeeeecCCcccCCcccc-----ccccCCCCccccccc
Q 003444 271 KGSCYRCFKG-NRFTEKEVCIVCDAKYCCNCVLR-----AMGSMPEGRKCVTCI 318 (819)
Q Consensus 271 ~~~c~~c~~~-~~~~~~~~cl~c~~~yc~~cv~~-----~mg~m~egrkc~~c~ 318 (819)
...|+.|.+. +.+.-|+-|-.||..+|+.|... .+|...+-|-|..|.
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~ 74 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACY 74 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHH
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHH
Confidence 3589999998 44557899999999999999643 456566778998886
No 347
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=82.65 E-value=0.57 Score=46.22 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=19.9
Q ss_pred eEEEeecCCCCchhHHHHHHHHhc
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy~ 556 (819)
.|+|.|..||||||+.+.+.-.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999998854333
No 348
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=82.49 E-value=0.86 Score=45.37 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=33.3
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCcc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYD 783 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYD 783 (819)
+++++||++|| ...+.-|..||.+++++|+|.|+++.+
T Consensus 62 v~l~iwDtaGq-e~~~~l~~~~~~~a~~~ilv~di~~~~ 99 (216)
T 4dkx_A 62 IRLQLWDTAGL-ERFRSLIPSYIRDSAAAVVVYDITNVN 99 (216)
T ss_dssp EEEEEECCSCT-TTCGGGHHHHHTTCSEEEEEEETTCHH
T ss_pred EEEEEEECCCc-hhhhhHHHHHhccccEEEEEeecchhH
Confidence 78999999998 667777888999999999999998643
No 349
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=82.25 E-value=0.61 Score=49.38 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=22.5
Q ss_pred ceeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
.-.-+.|+|+.||||||++|.+.-+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 345678999999999999999877665
No 350
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=82.20 E-value=0.52 Score=43.01 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=19.9
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
....-+||.|..|+||||+++++-
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~ 64 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHH
Confidence 344568999999999999998873
No 351
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=82.14 E-value=0.57 Score=49.88 Aligned_cols=27 Identities=15% Similarity=0.205 Sum_probs=21.8
Q ss_pred cceeeEEEeecCCCCchhHHHHHHHHh
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMKILy 555 (819)
..--.+.|+|+.||||||++|-+-=++
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344578999999999999999875444
No 352
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=82.12 E-value=0.92 Score=43.39 Aligned_cols=37 Identities=3% Similarity=0.037 Sum_probs=32.8
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+.+||++|+ ...+..|..++.+++++|||+|+++.
T Consensus 61 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (218)
T 4djt_A 61 IKFNVWDTAGQ-EKKAVLKDVYYIGASGAILFFDVTSR 97 (218)
T ss_dssp EEEEEEEECSG-GGTSCCCHHHHTTCSEEEEEEETTCH
T ss_pred EEEEEEecCCc-hhhchHHHHHhhcCCEEEEEEeCCCH
Confidence 67999999998 66777888899999999999999864
No 353
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=82.04 E-value=0.67 Score=48.39 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=22.2
Q ss_pred ceeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
+...+.|+|..||||||++|.+.-+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999998876544
No 354
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=82.04 E-value=0.61 Score=47.61 Aligned_cols=20 Identities=30% Similarity=0.602 Sum_probs=18.5
Q ss_pred eeEEEeecCCCCchhHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQM 551 (819)
-|++|+|..++||||++.++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L 21 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNAL 21 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 38999999999999999987
No 355
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=82.03 E-value=0.68 Score=44.95 Aligned_cols=23 Identities=30% Similarity=0.241 Sum_probs=19.8
Q ss_pred eeeEEEeecCCCCchhHHHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKI 553 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKI 553 (819)
..-|.|.|..||||||+.|.+.-
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999998865
No 356
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=82.02 E-value=0.34 Score=46.41 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=30.5
Q ss_pred ccEEEEEecccccccccccccccCC----CCEEEEEEeCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFED----IGMVIFCVALS 780 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEd----VtaVIFvVSLS 780 (819)
..+.+||++|+ ...+..|..++.+ ++++|||+|.+
T Consensus 55 ~~~~l~Dt~G~-~~~~~~~~~~~~~~~~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 55 SGVTLVDFPGH-VKLRYKLSDYLKTRAKFVKGLIFMVDST 93 (218)
T ss_dssp SSCEEEECCCC-GGGTHHHHHHHHHHGGGEEEEEEEEETT
T ss_pred ceEEEEECCCc-HHHHHHHHHHHHhccccCCEEEEEEECC
Confidence 57899999998 6677888888877 89999999998
No 357
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=81.97 E-value=0.59 Score=42.31 Aligned_cols=36 Identities=3% Similarity=-0.008 Sum_probs=26.2
Q ss_pred ccEEEEEeccccccccc-ccccccCCCCEEEEEEeCCC
Q 003444 745 LRYQLIRVQARGLGENC-KWLEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 745 l~frLiDVGGQgrsERk-KWi~~FEdVtaVIFvVSLSd 781 (819)
..+.+||++|+ ...+. .|..++.+++++|+|+|+++
T Consensus 51 ~~~~i~D~~g~-~~~~~~~~~~~~~~~d~~i~v~d~~~ 87 (169)
T 3q85_A 51 VTLIVYDIWEQ-GDAGGWLQDHCLQTGDAFLIVFSVTD 87 (169)
T ss_dssp EEEEEECCCCC---------CHHHHHCSEEEEEEETTC
T ss_pred EEEEEEECCCc-cccchhhhhhhhccCCEEEEEEECCC
Confidence 67889999998 33333 67778899999999999986
No 358
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=81.92 E-value=0.36 Score=46.19 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=18.9
Q ss_pred eEEEeecCCCCchhHHHHHHHHh
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy 555 (819)
-|.+.|..||||||+++.+.-.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 36789999999999999885433
No 359
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=81.90 E-value=0.77 Score=46.07 Aligned_cols=26 Identities=19% Similarity=0.173 Sum_probs=21.2
Q ss_pred cceeeEEEeecCCCCchhHHHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAKIL 554 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMKIL 554 (819)
.+...|.|.|..+|||||+.+.+.-.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999988653
No 360
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=81.84 E-value=0.73 Score=45.94 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=20.0
Q ss_pred eEEEeecCCCCchhHHHHHHHHhc
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy~ 556 (819)
.|+|+|+.||||+|..|.+-=-|+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999998887755554
No 361
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=81.83 E-value=0.31 Score=49.12 Aligned_cols=47 Identities=28% Similarity=0.605 Sum_probs=38.3
Q ss_pred CCcccCCCC-CccccceeeeecCCcccCCcccc-----ccccCCCCccccccc
Q 003444 272 GSCYRCFKG-NRFTEKEVCIVCDAKYCCNCVLR-----AMGSMPEGRKCVTCI 318 (819)
Q Consensus 272 ~~c~~c~~~-~~~~~~~~cl~c~~~yc~~cv~~-----~mg~m~egrkc~~c~ 318 (819)
..|+.|.+. +.+.-|+-|-.||..+|+.|-.. .+|...+-|-|..|.
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~~~~~~~~~~~~RvC~~C~ 214 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCF 214 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEEEEGGGTEEEEEEECHHHH
T ss_pred CccCCCCCccCCcccccccCCcCCEEChHHhCCeeecCcCCCCCCCEeCHHHH
Confidence 589999987 44557899999999999999654 456667789998885
No 362
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=81.78 E-value=0.6 Score=51.68 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=19.4
Q ss_pred eeeEEEeecCCCCchhHHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMK 552 (819)
..+|+|+|.+|+||||+++.+-
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLF 52 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEEECCCCCcHHHHHHHHh
Confidence 4678999999999999999873
No 363
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=81.59 E-value=0.72 Score=44.54 Aligned_cols=37 Identities=5% Similarity=0.195 Sum_probs=20.0
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
+.+++||++|+ ...+..|..++.+++++|||+|+++.
T Consensus 82 ~~l~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 118 (214)
T 2j1l_A 82 VHLHIWDTAGQ-DDYDRLRPLFYPDASVLLLCFDVTSP 118 (214)
T ss_dssp EEEEEEEC----------------CEEEEEEEEETTCH
T ss_pred EEEEEEECCCc-hhhhHHHHHHhccCCEEEEEEECcCH
Confidence 67999999998 56778888899999999999999864
No 364
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=81.59 E-value=0.6 Score=46.73 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=20.2
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
--+.|+|+.|+||||+++.+.-.+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3578899999999999998764443
No 365
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=81.57 E-value=0.64 Score=45.21 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=20.8
Q ss_pred HhcceeeEEEeecCCCCchhHHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
......-++|.|..||||||+.|.+.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 33444568899999999999999874
No 366
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=81.56 E-value=0.68 Score=45.76 Aligned_cols=21 Identities=33% Similarity=0.524 Sum_probs=18.0
Q ss_pred EEEeecCCCCchhHHHHHHHH
Q 003444 534 LLLVGCSGSGTSTIFKQAKIL 554 (819)
Q Consensus 534 LLLLGaGESGKSTIlKQMKIL 554 (819)
|+|.|++||||+||+|.+.--
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 688999999999999987533
No 367
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=81.44 E-value=0.66 Score=50.72 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=21.5
Q ss_pred eEEEeecCCCCchhHHHHHHHHhcC
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILYKA 557 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy~p 557 (819)
-+.|+|++||||||++|-+--+..|
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~p 80 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLERP 80 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCchHHHHHHHHhcCCCC
Confidence 4679999999999999998777665
No 368
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=81.41 E-value=0.61 Score=46.38 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=19.3
Q ss_pred EEEeecCCCCchhHHHHHHHHhc
Q 003444 534 LLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 534 LLLLGaGESGKSTIlKQMKILy~ 556 (819)
+||+|+.|+||||++|.+--...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999998754333
No 369
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=81.36 E-value=0.59 Score=52.40 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=18.3
Q ss_pred eeeEEEeecCCCCchhHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQM 551 (819)
---++|+|+.||||||++||+
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 345889999999999999993
No 370
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=81.25 E-value=0.62 Score=50.02 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=23.1
Q ss_pred hcceeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
-+.--.++|+|+.||||||++|-+--++.
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 33445799999999999999998865554
No 371
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=81.24 E-value=0.62 Score=50.75 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=20.2
Q ss_pred eEEEeecCCCCchhHHHHHHHHhcC
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILYKA 557 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy~p 557 (819)
-+.|+|++||||||++|-+-=+..|
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCchHHHHHHHHhcCCCC
Confidence 4689999999999999987644443
No 372
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=81.11 E-value=0.6 Score=50.68 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=20.0
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
--+.|+|++||||||++|-+-=+..
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3578999999999999998754443
No 373
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=80.94 E-value=0.61 Score=50.41 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.2
Q ss_pred eEEEeecCCCCchhHHHHH-HHH
Q 003444 533 KLLLVGCSGSGTSTIFKQA-KIL 554 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQM-KIL 554 (819)
-++++|+.||||||+++-+ .++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 7999999999999999977 444
No 374
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=80.82 E-value=0.56 Score=44.73 Aligned_cols=38 Identities=3% Similarity=0.055 Sum_probs=33.0
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCcc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYD 783 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYD 783 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++-+
T Consensus 74 ~~l~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~ 111 (200)
T 2o52_A 74 VKLQIWDTAGQ-ERFRSVTRSYYRGAAGALLVYDITSRE 111 (200)
T ss_dssp EEEEEECCTTH-HHHSCCCHHHHTTCSEEEEEEETTCHH
T ss_pred eEEEEEcCCCc-HhHHHHHHHHhccCCEEEEEEECcCHH
Confidence 68999999998 566778999999999999999998643
No 375
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=80.74 E-value=0.65 Score=47.25 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=18.5
Q ss_pred eEEEeecCCCCchhHHHHHHH
Q 003444 533 KLLLVGCSGSGTSTIFKQAKI 553 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKI 553 (819)
-|+|.|..||||||+.|++.-
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998754
No 376
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=80.71 E-value=1.2 Score=40.41 Aligned_cols=36 Identities=3% Similarity=0.002 Sum_probs=25.1
Q ss_pred ccEEEEEecccccc--cccccccccCCCCEEEEEEeCCC
Q 003444 745 LRYQLIRVQARGLG--ENCKWLEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 745 l~frLiDVGGQgrs--ERkKWi~~FEdVtaVIFvVSLSd 781 (819)
..+.+||++|+ .. .+..+..++.+++++|||+|+++
T Consensus 52 ~~~~~~D~~g~-~~~~~~~~~~~~~~~~~~~i~v~d~~~ 89 (175)
T 2nzj_A 52 TTLVVVDTWEA-EKLDKSWSQESCLQGGSAYVIVYSIAD 89 (175)
T ss_dssp EEEEEECCC--------CHHHHHTTTSCSEEEEEEETTC
T ss_pred EEEEEEecCCC-CccchhhhHHhhcccCCEEEEEEECCC
Confidence 67899999998 33 22334557889999999999986
No 377
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=80.68 E-value=0.64 Score=50.53 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=20.2
Q ss_pred eEEEeecCCCCchhHHHHHHHHhcC
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILYKA 557 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy~p 557 (819)
-+.|+|++||||||++|-+-=+..|
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p 55 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYKP 55 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCchHHHHHHHHHCCCCC
Confidence 4679999999999999987654443
No 378
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=80.60 E-value=0.7 Score=46.83 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.0
Q ss_pred eeEEEeecCCCCchhHHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKI 553 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKI 553 (819)
.-|+|.|..||||||+.+++.-
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4588999999999999998853
No 379
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=80.55 E-value=1.2 Score=44.21 Aligned_cols=48 Identities=25% Similarity=0.544 Sum_probs=40.6
Q ss_pred CCcccCCCCCccccceeeeecCCcccCCccccccccCCCCc-ccccccCccc
Q 003444 272 GSCYRCFKGNRFTEKEVCIVCDAKYCCNCVLRAMGSMPEGR-KCVTCIGYPI 322 (819)
Q Consensus 272 ~~c~~c~~~~~~~~~~~cl~c~~~yc~~cv~~~mg~m~egr-kc~~c~g~~~ 322 (819)
..|..|++++. --.|-.|.+.|-..|+..++-++|+|. .|..|...+-
T Consensus 3 ~~C~~C~~~g~---ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 3 TICRVCQKPGD---LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 51 (189)
T ss_dssp CCBTTTCCCSS---CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSCC
T ss_pred CcCccCCCCCc---eeECCCCCchhccccCCCCcccCCCCCCCCcCccCCCC
Confidence 36999999864 455999999999999999998999886 8999987653
No 380
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=80.49 E-value=0.74 Score=43.24 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=20.1
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHh
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy 555 (819)
.--++|+|+.|+||||+++-+--..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3458899999999999999875444
No 381
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=80.46 E-value=0.71 Score=51.25 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=32.4
Q ss_pred cccCchhHHHhcceeeEEEeecCCCCchhHHHHHHHHhcCCCCCHHHhhhh
Q 003444 518 MSRSVPDYIERRTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENI 568 (819)
Q Consensus 518 IDr~L~dk~~~k~~vKLLLLGaGESGKSTIlKQMKILy~p~GFS~eEr~~~ 568 (819)
++..+......+..+|+.++|..++||||++.++ +|..+.|++..+..+
T Consensus 30 ~~~~~~~~~~~k~~~~i~iiG~vd~GKSTLi~~L--l~~~g~~~~~~~~~~ 78 (467)
T 1r5b_A 30 VDQELLKDMYGKEHVNIVFIGHVDAGKSTLGGNI--LFLTGMVDKRTMEKI 78 (467)
T ss_dssp CCSTTHHHHSCCEEEEEEEEECGGGTHHHHHHHH--HHHTTSSCHHHHHHH
T ss_pred cCHHHHHhhcCCCeeEEEEEECCCCCHHHHHHHH--HHHhCCCChHHHHHH
Confidence 3333333344577899999999999999999976 443234655443333
No 382
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=80.42 E-value=0.65 Score=50.57 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=19.7
Q ss_pred eEEEeecCCCCchhHHHHHHHHhc
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy~ 556 (819)
-+.|+|++||||||++|-+-=+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 478999999999999998764443
No 383
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=80.42 E-value=0.66 Score=47.80 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=19.6
Q ss_pred EEEeecCCCCchhHHHHHHHHhc
Q 003444 534 LLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 534 LLLLGaGESGKSTIlKQMKILy~ 556 (819)
+||+|+.|+||||++|.+--..+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcC
Confidence 99999999999999998754433
No 384
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=80.41 E-value=0.78 Score=43.11 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=19.8
Q ss_pred EEEeecCCCCchhHHHHHHHH-hc
Q 003444 534 LLLVGCSGSGTSTIFKQAKIL-YK 556 (819)
Q Consensus 534 LLLLGaGESGKSTIlKQMKIL-y~ 556 (819)
.+++|+.|||||||++-+.++ ++
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 478999999999999999864 45
No 385
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=80.36 E-value=0.61 Score=49.61 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=21.1
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
--.++|+|+.||||||++|-+-=++.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34789999999999999998754444
No 386
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=80.27 E-value=0.58 Score=44.36 Aligned_cols=37 Identities=11% Similarity=-0.048 Sum_probs=32.6
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++-
T Consensus 77 ~~l~i~Dt~G~-~~~~~~~~~~~~~~d~iilv~d~~~~ 113 (199)
T 2p5s_A 77 TVLQLWDTAGQ-ERFRSIAKSYFRKADGVLLLYDVTCE 113 (199)
T ss_dssp EEEEEEECTTC-TTCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred EEEEEEECCCC-cchhhhHHHHHhhCCEEEEEEECCCh
Confidence 67999999998 66777899999999999999999864
No 387
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=80.25 E-value=0.74 Score=49.56 Aligned_cols=31 Identities=19% Similarity=0.096 Sum_probs=24.9
Q ss_pred HHhcceeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 526 IERRTLQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 526 ~~~k~~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
..-.+-.++.|+|..|+||||++|++-=+..
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445567999999999999999998855544
No 388
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=80.23 E-value=0.67 Score=50.58 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=20.7
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhcC
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYKA 557 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~p 557 (819)
--+.|+|++||||||++|-+-=+..|
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~p 63 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEEP 63 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCC
Confidence 35679999999999999987654443
No 389
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=80.12 E-value=0.68 Score=50.35 Aligned_cols=25 Identities=40% Similarity=0.567 Sum_probs=20.1
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
--+.|+|++||||||++|-+-=+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 3578999999999999998764443
No 390
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=80.00 E-value=0.49 Score=50.20 Aligned_cols=27 Identities=44% Similarity=0.533 Sum_probs=22.4
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhcC
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYKA 557 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~p 557 (819)
--++.|+|+.||||||++|-+-=++.|
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~~p 106 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFYDI 106 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCCC
Confidence 457899999999999999988655554
No 391
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=79.93 E-value=0.69 Score=50.77 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=20.4
Q ss_pred eEEEeecCCCCchhHHHHHHHHhcC
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILYKA 557 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy~p 557 (819)
-+.|+|++||||||++|-+-=+..|
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~p 55 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCCC
Confidence 4679999999999999988655543
No 392
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=79.91 E-value=0.71 Score=49.92 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=21.3
Q ss_pred ceeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
.--.++|+|+.||||||+++-+--++.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 334689999999999999998754443
No 393
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=79.89 E-value=0.58 Score=43.96 Aligned_cols=45 Identities=24% Similarity=0.625 Sum_probs=35.2
Q ss_pred CCcccCCCC-CccccceeeeecCCcccCCccccccccCCCCcccccccC
Q 003444 272 GSCYRCFKG-NRFTEKEVCIVCDAKYCCNCVLRAMGSMPEGRKCVTCIG 319 (819)
Q Consensus 272 ~~c~~c~~~-~~~~~~~~cl~c~~~yc~~cv~~~mg~m~egrkc~~c~g 319 (819)
..|+.|.+. +.+.-|+.|-.||..+|+.|-..-+ +.-|-|..|.-
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~---~~vRVC~~C~~ 65 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG---NGPRLCLLCQR 65 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-------CCEEHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCC---CCceECHHHHH
Confidence 589999997 4455789999999999999987654 46899999963
No 394
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=79.87 E-value=0.4 Score=45.07 Aligned_cols=36 Identities=6% Similarity=0.039 Sum_probs=32.6
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSd 781 (819)
..+++||++|+ ...+..|..++.+++++|||+|+++
T Consensus 72 ~~~~i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~ 107 (191)
T 3dz8_A 72 VKLQIWDTAGQ-ERYRTITTAYYRGAMGFILMYDITN 107 (191)
T ss_dssp EEEEEECHHHH-HHCHHHHHHHHTTCCEEEEEEETTC
T ss_pred EEEEEEeCCCh-HHHHHHHHHHHccCCEEEEEEECcC
Confidence 68999999998 6677889999999999999999986
No 395
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=79.79 E-value=0.79 Score=44.52 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=16.9
Q ss_pred eEEEeecCCCCchhHHHHH
Q 003444 533 KLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQM 551 (819)
=++|+|..+|||||++.|+
T Consensus 25 ~~~i~G~~GsGKTtl~~~~ 43 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQF 43 (247)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3688999999999998887
No 396
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=79.77 E-value=0.64 Score=41.83 Aligned_cols=37 Identities=5% Similarity=-0.090 Sum_probs=32.1
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+.+||++|+ ...+..|..++.+++++|||+|+++-
T Consensus 51 ~~~~~~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~ 87 (172)
T 2erx_A 51 CTLQITDTTGS-HQFPAMQRLSISKGHAFILVYSITSR 87 (172)
T ss_dssp EEEEEEECCSC-SSCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred EEEEEEECCCc-hhhHHHHHHhcccCCEEEEEEECcCH
Confidence 57999999998 56677788899999999999999863
No 397
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=79.56 E-value=0.84 Score=45.17 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=21.3
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
...|+|.|..||||||+.+.+.--++
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999998854443
No 398
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=79.49 E-value=0.78 Score=46.72 Aligned_cols=47 Identities=30% Similarity=0.679 Sum_probs=38.0
Q ss_pred CCcccCCCC-CccccceeeeecCCcccCCcccc-----ccccCCCCccccccc
Q 003444 272 GSCYRCFKG-NRFTEKEVCIVCDAKYCCNCVLR-----AMGSMPEGRKCVTCI 318 (819)
Q Consensus 272 ~~c~~c~~~-~~~~~~~~cl~c~~~yc~~cv~~-----~mg~m~egrkc~~c~ 318 (819)
..|+.|.+. +.+.-|+-|-.||..+|..|-.. .+|...+-|-|..|.
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~ 217 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCY 217 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHH
T ss_pred CCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHH
Confidence 489999986 44446899999999999999753 456667789999886
No 399
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=79.46 E-value=0.85 Score=50.40 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.7
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
....+|+|+|..+||||||.+++.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La 60 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLT 60 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHH
Confidence 446789999999999999999874
No 400
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=79.34 E-value=1 Score=47.52 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=22.1
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhcC
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYKA 557 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~p 557 (819)
.-.+.|+|.+||||||+++-+=-++.|
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 346889999999999999988666654
No 401
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=79.31 E-value=1.6 Score=40.04 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=25.7
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSd 781 (819)
..+++||++|+ . + ..++.+++++|||+|+++
T Consensus 54 ~~l~i~Dt~G~-~--~---~~~~~~~d~~ilv~D~~~ 84 (178)
T 2iwr_A 54 HLVLIREEAGA-P--D---AKFSGWADAVIFVFSLED 84 (178)
T ss_dssp EEEEEEECSSS-C--C---HHHHHHCSEEEEEEETTC
T ss_pred EEEEEEECCCC-c--h---hHHHHhCCEEEEEEECcC
Confidence 67899999998 2 2 357788999999999885
No 402
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=79.12 E-value=0.75 Score=50.85 Aligned_cols=20 Identities=35% Similarity=0.487 Sum_probs=18.0
Q ss_pred eEEEeecCCCCchhHHHHHH
Q 003444 533 KLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMK 552 (819)
-++++|+.||||||+++.|=
T Consensus 169 ii~I~GpnGSGKTTlL~all 188 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGL 188 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999873
No 403
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=78.93 E-value=0.81 Score=46.39 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=19.4
Q ss_pred EEEeecCCCCchhHHHHHHHHhc
Q 003444 534 LLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 534 LLLLGaGESGKSTIlKQMKILy~ 556 (819)
+||+|+.|+||||++|.+--...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 89999999999999998754433
No 404
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=78.78 E-value=0.95 Score=48.45 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=21.1
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
.=+.|.|+.||||||+++.+.-+..
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3578899999999999999876654
No 405
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=78.55 E-value=0.84 Score=46.95 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=20.1
Q ss_pred eeeEEEeecCCCCchhHHHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKI 553 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKI 553 (819)
.-.|.|+|..||||||+.|.+--
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 44799999999999999998854
No 406
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=78.47 E-value=0.93 Score=50.82 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.5
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
.+.+||+|+|.+++||||+++++.
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~ 62 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLI 62 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHh
Confidence 457999999999999999999874
No 407
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=78.37 E-value=0.85 Score=50.99 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=21.5
Q ss_pred hcceeeEEEeecCCCCchhHHHHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQAKIL 554 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQMKIL 554 (819)
.+.--.++|+|..||||||++|-+-=+
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 334568999999999999999876433
No 408
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=78.36 E-value=0.95 Score=47.54 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=17.5
Q ss_pred eEEEeecCCCCchhHHHHHH
Q 003444 533 KLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMK 552 (819)
-++|+|..||||||++|.+-
T Consensus 6 v~~i~G~~GaGKTTll~~l~ 25 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHIL 25 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHH
Confidence 45789999999999999875
No 409
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=78.36 E-value=1.1 Score=41.85 Aligned_cols=28 Identities=29% Similarity=0.579 Sum_probs=21.2
Q ss_pred HHHhcceeeEEEeecCCCCchhHHHHHH
Q 003444 525 YIERRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 525 k~~~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
..+..+.-.+||.|..|+||||+++++-
T Consensus 32 ~l~~~~~~~~ll~G~~G~GKT~l~~~l~ 59 (226)
T 2chg_A 32 YVERKNIPHLLFSGPPGTGKTATAIALA 59 (226)
T ss_dssp HHHTTCCCCEEEECSTTSSHHHHHHHHH
T ss_pred HHhCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 3333333349999999999999999874
No 410
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=78.34 E-value=2.7 Score=37.53 Aligned_cols=49 Identities=24% Similarity=0.506 Sum_probs=41.6
Q ss_pred CCcccCCCCCccccceeeeecCCcccCCccccccccCCCCc-ccccccCccch
Q 003444 272 GSCYRCFKGNRFTEKEVCIVCDAKYCCNCVLRAMGSMPEGR-KCVTCIGYPID 323 (819)
Q Consensus 272 ~~c~~c~~~~~~~~~~~cl~c~~~yc~~cv~~~mg~m~egr-kc~~c~g~~~~ 323 (819)
..|..|++++. --.|-.|.+.|=-.|+..++-++|+|. .|..|...+-.
T Consensus 26 ~~C~vC~~~g~---LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~ 75 (88)
T 1fp0_A 26 TICRVCQKPGD---LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDL 75 (88)
T ss_dssp SCCSSSCSSSC---CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSS
T ss_pred CcCcCcCCCCC---EEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCcc
Confidence 58999999863 457999999999999999999999986 69999876643
No 411
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=78.17 E-value=0.66 Score=42.48 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=20.5
Q ss_pred hcceeeEEEeecCCCCchhHHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
.....-+||.|..|+||||+++++-
T Consensus 40 ~~~~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 40 RRTKNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp SSSSCEEEEESCGGGCHHHHHHHHH
T ss_pred CCCCCceEEECCCCCCHHHHHHHHH
Confidence 3445568999999999999999874
No 412
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=78.05 E-value=0.93 Score=50.33 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=24.2
Q ss_pred HhcceeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
.-.+-.++.|+|..||||||++|++==+..
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 444567899999999999999998855544
No 413
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=78.02 E-value=0.59 Score=50.52 Aligned_cols=25 Identities=12% Similarity=0.284 Sum_probs=20.3
Q ss_pred eEEEeecCCCCchhHHHHHHHHhcC
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILYKA 557 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy~p 557 (819)
-+.|+|++||||||++|-+-=+..|
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~p 52 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred EEEEECCCCccHHHHHHHHHcCCCC
Confidence 5789999999999999987644443
No 414
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=77.87 E-value=1.1 Score=47.02 Aligned_cols=28 Identities=21% Similarity=0.100 Sum_probs=23.0
Q ss_pred cceeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
++...+.+.|..+|||||+.+.+.-++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4456788999999999999998866554
No 415
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=77.81 E-value=0.91 Score=49.83 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=19.0
Q ss_pred eeeEEEeecCCCCchhHHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMK 552 (819)
--.+.|+|++||||||++|-+-
T Consensus 47 Ge~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHh
Confidence 3468899999999999999774
No 416
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=77.76 E-value=1.1 Score=46.14 Aligned_cols=23 Identities=43% Similarity=0.495 Sum_probs=20.3
Q ss_pred eeeEEEeecCCCCchhHHHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKI 553 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKI 553 (819)
...|.|.|..||||||+.|.+.-
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999983
No 417
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=77.73 E-value=1 Score=50.23 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.7
Q ss_pred eeeEEEeecCCCCchhHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQM 551 (819)
..++.|+|..||||||+++-+
T Consensus 42 i~~vaLvG~nGaGKSTLln~L 62 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTL 62 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHH
Confidence 456999999999999999876
No 418
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=77.72 E-value=0.78 Score=42.78 Aligned_cols=37 Identities=5% Similarity=-0.091 Sum_probs=32.1
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
..+.+||++|+ ...+..|..++.+++++|||+|+++-
T Consensus 56 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~ 92 (199)
T 2gf0_A 56 CTLQITDTTGS-HQFPAMQRLSISKGHAFILVFSVTSK 92 (199)
T ss_dssp EEEEEEECCGG-GSCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred EEEEEEeCCCh-HHhHHHHHHhhccCCEEEEEEECcCH
Confidence 67999999998 56677788899999999999999863
No 419
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=77.66 E-value=0.68 Score=43.40 Aligned_cols=48 Identities=25% Similarity=0.629 Sum_probs=37.0
Q ss_pred CCCcccCCCC-CccccceeeeecCCcccCCcccccc---ccCCCCccccccc
Q 003444 271 KGSCYRCFKG-NRFTEKEVCIVCDAKYCCNCVLRAM---GSMPEGRKCVTCI 318 (819)
Q Consensus 271 ~~~c~~c~~~-~~~~~~~~cl~c~~~yc~~cv~~~m---g~m~egrkc~~c~ 318 (819)
...|+.|.+. +.+.-|+-|-.||..+|+.|...-+ +...+-|-|..|.
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~~~p~~~~p~RVC~~C~ 120 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACF 120 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTTCSSCEEECHHHH
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCccccCCCCCCCEeCHHHH
Confidence 3589999997 4455789999999999999976542 3345678888885
No 420
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=77.53 E-value=0.74 Score=39.97 Aligned_cols=48 Identities=23% Similarity=0.506 Sum_probs=37.2
Q ss_pred CCcccCCCC-CccccceeeeecCCcccCCcccccc---ccCCCCcccccccC
Q 003444 272 GSCYRCFKG-NRFTEKEVCIVCDAKYCCNCVLRAM---GSMPEGRKCVTCIG 319 (819)
Q Consensus 272 ~~c~~c~~~-~~~~~~~~cl~c~~~yc~~cv~~~m---g~m~egrkc~~c~g 319 (819)
..|+.|.+. +.+.-|+-|-.||..+|+.|...-+ +...+-|-|..|..
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~ 71 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHT 71 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHH
T ss_pred CcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHH
Confidence 579999997 4455789999999999999976543 33456788888853
No 421
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=77.47 E-value=0.93 Score=47.76 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=20.3
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
--++|+|..||||||+++-+=-++.
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999987755443
No 422
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=77.44 E-value=1.3 Score=46.30 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=21.4
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
..-+.|+|++|+||||+++.+- +..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 4467899999999999999998 655
No 423
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=77.36 E-value=1.1 Score=44.48 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=21.4
Q ss_pred HhcceeeEEEeecCCCCchhHHHHHHH
Q 003444 527 ERRTLQKLLLVGCSGSGTSTIFKQAKI 553 (819)
Q Consensus 527 ~~k~~vKLLLLGaGESGKSTIlKQMKI 553 (819)
...+...+.|.|..||||||+.|.+.-
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 344556799999999999999998764
No 424
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=77.20 E-value=1.3 Score=43.68 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=22.8
Q ss_pred cceeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
....-|.|.|..+|||||+.|.+.-.++
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456778899999999999999876644
No 425
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=77.12 E-value=1.1 Score=45.18 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=20.0
Q ss_pred ceeeEEEeecCCCCchhHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQM 551 (819)
...||+++|..++||||++..+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l 46 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENF 46 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHH
T ss_pred CCCeEEEEeCCCCCHHHHHHHH
Confidence 4579999999999999999986
No 426
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=77.11 E-value=1.1 Score=49.16 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.1
Q ss_pred eeeEEEeecCCCCchhHHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMK 552 (819)
.+|+.|+|.+++||||+++.+-
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~ 201 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAIL 201 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHh
Confidence 5899999999999999999863
No 427
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=77.10 E-value=1.3 Score=46.11 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=20.6
Q ss_pred ceeeEEEeecCCCCchhHHHHHHHHh
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMKILy 555 (819)
....+.|+|++||||||+++.+-=+.
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccc
Confidence 34467899999999999999875433
No 428
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=77.09 E-value=1 Score=48.27 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=20.9
Q ss_pred eeEEEeecCCCCchhHHHHHHHHh
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy 555 (819)
--++|+|..||||||+++|+=.+.
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999997665
No 429
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=76.95 E-value=2.4 Score=37.84 Aligned_cols=36 Identities=22% Similarity=0.197 Sum_probs=29.2
Q ss_pred ccEEEEEecccccc-------cccccccccCCCCEEEEEEeCCC
Q 003444 745 LRYQLIRVQARGLG-------ENCKWLEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 745 l~frLiDVGGQgrs-------ERkKWi~~FEdVtaVIFvVSLSd 781 (819)
..+.+||.+|+ .. .+..|..++.+++++|||+|.++
T Consensus 49 ~~~~l~Dt~G~-~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~ 91 (161)
T 2dyk_A 49 GRFLLVDTGGL-WSGDKWEKKIQEKVDRALEDAEVVLFAVDGRA 91 (161)
T ss_dssp EEEEEEECGGG-CSSSSCCHHHHHHHHHHTTTCSEEEEEEESSS
T ss_pred ceEEEEECCCC-CCccchHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 47889999998 33 24567778999999999999886
No 430
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=76.95 E-value=0.98 Score=48.80 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=18.3
Q ss_pred ceee-EEEeecCCCCchhHHHHH
Q 003444 530 TLQK-LLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 530 ~~vK-LLLLGaGESGKSTIlKQM 551 (819)
..++ +.|+|..++||||+++.+
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L 199 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSL 199 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 3466 899999999999999976
No 431
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=76.94 E-value=0.73 Score=45.70 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=18.9
Q ss_pred eeeEEEeecCCCCchhHHHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKI 553 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKI 553 (819)
-.-+.|.|..||||||++|.+.=
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45678999999999999887643
No 432
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=76.91 E-value=1.1 Score=47.87 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=20.1
Q ss_pred eeeEEEeecCCCCchhHHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMK 552 (819)
...+.|+|..+|||||+++.+-
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~ 95 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFG 95 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHH
Confidence 6789999999999999999874
No 433
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=76.90 E-value=1 Score=42.27 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=17.8
Q ss_pred eEEEeecCCCCchhHHHHHH
Q 003444 533 KLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMK 552 (819)
-+||.|..|+||||+++++-
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~ 66 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLA 66 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999874
No 434
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=76.81 E-value=1.2 Score=44.92 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=18.4
Q ss_pred EEEeecCCCCchhHHHHHHHHhc
Q 003444 534 LLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 534 LLLLGaGESGKSTIlKQMKILy~ 556 (819)
|+|+|+.||||+|+.+.+.=-|+
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 56799999999998887754444
No 435
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=76.50 E-value=0.58 Score=50.57 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=19.6
Q ss_pred eEEEeecCCCCchhHHHHHHHHhc
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy~ 556 (819)
-+.|+|++||||||++|-+-=+..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 467999999999999998754443
No 436
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=76.33 E-value=1.3 Score=41.92 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=20.0
Q ss_pred eEEEeecCCCCchhHHHHHHHHhc
Q 003444 533 KLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKILy~ 556 (819)
.|.|.|..||||||+.|.+.-.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 578899999999999999865444
No 437
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=76.22 E-value=1.2 Score=44.24 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=17.4
Q ss_pred EEEeecCCCCchhHHHHHH
Q 003444 534 LLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 534 LLLLGaGESGKSTIlKQMK 552 (819)
+|++|..+|||||+..|+-
T Consensus 2 ilV~Gg~~SGKS~~A~~la 20 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI 20 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7899999999999999874
No 438
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=77.84 E-value=0.54 Score=44.64 Aligned_cols=37 Identities=8% Similarity=0.118 Sum_probs=32.1
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCCc
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDY 782 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdY 782 (819)
+.+++||++|+ ...+..|..++.+++++|||+|+++-
T Consensus 78 ~~l~i~Dt~G~-~~~~~~~~~~~~~~d~iilv~D~~~~ 114 (204)
T 3th5_A 78 VNLGLWDTAGQ-EDYDRLRPLSYPQTDVFLICFSLVSP 114 (204)
Confidence 67889999998 66778899999999999999998763
No 439
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=75.71 E-value=1.3 Score=46.17 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.2
Q ss_pred ceeeEEEeecCCCCchhHHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMK 552 (819)
+..++.|+|..++||||+++.+-
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~ 29 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLL 29 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHH
Confidence 34589999999999999999884
No 440
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=75.65 E-value=1.1 Score=44.46 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=18.6
Q ss_pred eeEEEeecCCCCchhHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMK 552 (819)
..+||.|..|+||||++|.+-
T Consensus 46 ~~vll~G~~GtGKT~la~~la 66 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIA 66 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 358999999999999999874
No 441
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=75.60 E-value=1.2 Score=45.55 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=20.1
Q ss_pred eeeEEEeecCCCCchhHHHHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKIL 554 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKIL 554 (819)
...+.|.|+.||||||+.|.+--.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999987433
No 442
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=75.52 E-value=0.97 Score=49.44 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=0.0
Q ss_pred ccccccCch---hHHHhcceeeEEEeecCCCCchhHHHHH
Q 003444 515 SGLMSRSVP---DYIERRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 515 S~~IDr~L~---dk~~~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
+..+...+. ...+.+..+|++++|..++||||++.++
T Consensus 5 ~~~~~~~i~~~l~~~~~~~~~~i~iiG~~~~GKSTLi~~L 44 (434)
T 1zun_B 5 SDLISEDILAYLGQHERKEMLRFLTCGNVDDGKSTLIGRL 44 (434)
T ss_dssp -----------CCSTTSCEEEEEEEECCTTSSHHHHHHHH
T ss_pred cccchhhHHHHHhhcccCCceEEEEEECCCCCHHHHHHHH
No 443
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=74.93 E-value=1.9 Score=40.58 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=25.3
Q ss_pred ccEEEEEecccccccccccccccCCCCEEEEEEeCCC
Q 003444 745 LRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 745 l~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSd 781 (819)
+.+++||++|+ ...+ ++.+++++|||+|+++
T Consensus 67 ~~l~i~Dt~G~-~~~~-----~~~~~~~~i~v~d~~~ 97 (184)
T 3ihw_A 67 YLLLIRDEGGP-PELQ-----FAAWVDAVVFVFSLED 97 (184)
T ss_dssp EEEEEEECSSS-CCHH-----HHHHCSEEEEEEETTC
T ss_pred EEEEEEECCCC-hhhh-----eecCCCEEEEEEECcC
Confidence 67899999998 3222 7788999999999885
No 444
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=74.79 E-value=1.2 Score=50.41 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=18.1
Q ss_pred eEEEeecCCCCchhHHHHHH
Q 003444 533 KLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMK 552 (819)
-++++|+.||||||+++-+-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 49999999999999999874
No 445
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.79 E-value=1.4 Score=38.40 Aligned_cols=47 Identities=23% Similarity=0.675 Sum_probs=36.1
Q ss_pred CCcccCCCC-CccccceeeeecCCcccCCcccc-----ccccC------CCCccccccc
Q 003444 272 GSCYRCFKG-NRFTEKEVCIVCDAKYCCNCVLR-----AMGSM------PEGRKCVTCI 318 (819)
Q Consensus 272 ~~c~~c~~~-~~~~~~~~cl~c~~~yc~~cv~~-----~mg~m------~egrkc~~c~ 318 (819)
..|+.|.+. +.+.-|+-|-.||..+|..|-.. .+|.. .+-|-|..|.
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~ 73 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCN 73 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHH
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHH
Confidence 589999998 45557899999999999999653 24542 3467888885
No 446
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=74.77 E-value=1.1 Score=42.71 Aligned_cols=36 Identities=3% Similarity=0.006 Sum_probs=28.6
Q ss_pred ccEEEEEeccccccccc-ccccccCCCCEEEEEEeCCC
Q 003444 745 LRYQLIRVQARGLGENC-KWLEMFEDIGMVIFCVALSD 781 (819)
Q Consensus 745 l~frLiDVGGQgrsERk-KWi~~FEdVtaVIFvVSLSd 781 (819)
+.+.+||++|+ ...+. .|..+|.+++++|||+|+++
T Consensus 72 ~~l~i~Dt~g~-~~~~~~~~~~~~~~~d~~ilv~d~~~ 108 (195)
T 3cbq_A 72 VTLVVYDIWEQ-GDAGGWLRDHCLQTGDAFLIVFSVTD 108 (195)
T ss_dssp EEEEEECCCCC-SGGGHHHHHHHHHHCSEEEEEEETTC
T ss_pred EEEEEEecCCC-ccchhhhHHHhhccCCEEEEEEECCC
Confidence 67889999998 33333 56667889999999999985
No 447
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=74.77 E-value=1.2 Score=50.51 Aligned_cols=25 Identities=28% Similarity=0.210 Sum_probs=20.8
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
-.+.|+|..||||||++|-+-=++.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4688999999999999998765544
No 448
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=74.72 E-value=0.78 Score=40.61 Aligned_cols=47 Identities=23% Similarity=0.655 Sum_probs=36.7
Q ss_pred CCcccCCCC-CccccceeeeecCCcccCCccccc-----cccCCCCcccccccC
Q 003444 272 GSCYRCFKG-NRFTEKEVCIVCDAKYCCNCVLRA-----MGSMPEGRKCVTCIG 319 (819)
Q Consensus 272 ~~c~~c~~~-~~~~~~~~cl~c~~~yc~~cv~~~-----mg~m~egrkc~~c~g 319 (819)
..|+.|.+. +.+.-|+-|-.||..+|..|...- +| ..+-|-|..|..
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g-~~~~RVC~~C~~ 62 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAG-NTQQKVCKQCHT 62 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTT-SEEEEECHHHHH
T ss_pred CCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccC-CCcCEECHHHHH
Confidence 479999997 445578999999999999997542 34 346789998864
No 449
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=74.44 E-value=1.3 Score=42.16 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=18.4
Q ss_pred eeEEEeecCCCCchhHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMK 552 (819)
.-++|.|..|+||||+++.+-
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~ 75 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIA 75 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 568999999999999998763
No 450
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=74.34 E-value=1.4 Score=47.03 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=22.6
Q ss_pred cceeeEEEeecCCCCchhHHHHHHHHhcC
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAKILYKA 557 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMKILy~p 557 (819)
.+..-++|+|..||||||+++-+=-++.|
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34567889999999999999987555543
No 451
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=74.17 E-value=1.3 Score=43.01 Aligned_cols=20 Identities=30% Similarity=0.492 Sum_probs=17.1
Q ss_pred eEEEeecCCCCchhHHHHHH
Q 003444 533 KLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMK 552 (819)
-+.+.|..+|||||+++.+-
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~ 27 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLI 27 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 46789999999999998763
No 452
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=73.96 E-value=1.5 Score=43.14 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=19.9
Q ss_pred EEEeecCCCCchhHHHHHHHHhc
Q 003444 534 LLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 534 LLLLGaGESGKSTIlKQMKILy~ 556 (819)
.+++|+.|||||||+.-+.++-.
T Consensus 26 ~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHhc
Confidence 47889999999999999986654
No 453
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=73.57 E-value=1.5 Score=46.70 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=20.6
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
.+...+.|+|..||||||+++.+-
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 445678999999999999999874
No 454
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=73.51 E-value=1.4 Score=50.06 Aligned_cols=27 Identities=41% Similarity=0.477 Sum_probs=22.6
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhcC
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYKA 557 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~p 557 (819)
--++.|+|+.||||||++|-+-=++.|
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~~p 395 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFYDI 395 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccCC
Confidence 457899999999999999988656554
No 455
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=73.31 E-value=1.5 Score=47.46 Aligned_cols=18 Identities=39% Similarity=0.571 Sum_probs=16.8
Q ss_pred eEEEeecCCCCchhHHHH
Q 003444 533 KLLLVGCSGSGTSTIFKQ 550 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQ 550 (819)
||||||.+++|||||+++
T Consensus 1 KIvllGdsgvGKTSLl~~ 18 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKV 18 (331)
T ss_dssp CEEEECSTTSSTTHHHHH
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 899999999999999974
No 456
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=73.26 E-value=1.5 Score=50.02 Aligned_cols=27 Identities=41% Similarity=0.438 Sum_probs=22.4
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhcC
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYKA 557 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~p 557 (819)
--++.|+|+.||||||++|-+-=++.|
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~~~p 396 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRLYDP 396 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 457899999999999999988655554
No 457
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=73.11 E-value=1.5 Score=46.57 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.5
Q ss_pred cceeeEEEeecCCCCchhHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQM 551 (819)
....+++|+|..++||||+++.+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L 187 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKAL 187 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 35679999999999999999976
No 458
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=73.07 E-value=1.5 Score=53.81 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=19.9
Q ss_pred eeEEEeecCCCCchhHHHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKIL 554 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKIL 554 (819)
--++|+|+.+|||||++||+-++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iGl~ 812 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAGLL 812 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 35789999999999999999654
No 459
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=73.05 E-value=1.3 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=19.9
Q ss_pred eeEEEeecCCCCchhHHHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKIL 554 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKIL 554 (819)
--++|+|+.+|||||++||+=.+
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 35789999999999999998654
No 460
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=73.01 E-value=1.6 Score=45.61 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.2
Q ss_pred ceeeEEEeecCCCCchhHHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMK 552 (819)
+..++.|+|.+++||||++.++-
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~ 28 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLL 28 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHh
Confidence 35689999999999999999873
No 461
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=73.01 E-value=1.4 Score=46.26 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=18.5
Q ss_pred eeEEEeecCCCCchhHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMK 552 (819)
-.++|+|+.|+||||++|-+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia 72 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIA 72 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 458999999999999999773
No 462
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=72.94 E-value=1.7 Score=47.60 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=27.5
Q ss_pred hcceeeEEEeecCCCCchhHHHHHHHHhcCCCCCHHHhhh
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHEN 567 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQMKILy~p~GFS~eEr~~ 567 (819)
.+..+|++++|..++||||++.++ ++..+.|++.....
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~L--l~~~~~i~~~~~~~ 40 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRL--LMDRGFIDEKTVKE 40 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHH--HHHHBCCCHHHHHH
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHH--HHHcCCcCHHHHhh
Confidence 356789999999999999999976 44323576554333
No 463
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=72.88 E-value=1.4 Score=50.25 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=20.7
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
---++|+|.+||||||+++.+--++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhh
Confidence 34688999999999999998754443
No 464
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=72.78 E-value=1.6 Score=43.81 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=22.0
Q ss_pred ceeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
+-.-+.+.|..||||||+++.+.-.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999998866554
No 465
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=72.77 E-value=1.4 Score=48.11 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=24.7
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhcCCCCCHHHhhhhH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYKAVPFSDDEHENIK 569 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~p~GFS~eEr~~~K 569 (819)
.-|+|.|..||||||+.+++.--++-.-++.++...|+
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~~ 296 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQ 296 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSCSHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHHHHH
Confidence 45778999999999999986422220224555554443
No 466
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=72.56 E-value=1.4 Score=50.00 Aligned_cols=28 Identities=39% Similarity=0.462 Sum_probs=23.2
Q ss_pred ceeeEEEeecCCCCchhHHHHHHHHhcC
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAKILYKA 557 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMKILy~p 557 (819)
.--++.|+|+.||||||++|-+-=++.|
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3457899999999999999998666654
No 467
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=72.26 E-value=1.7 Score=47.79 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.0
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
++..++.|+|..++||||+|+.+-
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Lt 41 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAIT 41 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999874
No 468
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=72.23 E-value=1.5 Score=47.64 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=20.6
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
---++|+|..||||||+++-+=-++.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 34688999999999999987754443
No 469
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=71.52 E-value=1.5 Score=49.81 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=19.4
Q ss_pred EEEeecCCCCchhHHHHHHHHhcC
Q 003444 534 LLLVGCSGSGTSTIFKQAKILYKA 557 (819)
Q Consensus 534 LLLLGaGESGKSTIlKQMKILy~p 557 (819)
+-|+|+.||||||++|-+-=++.|
T Consensus 28 ~gLiGpNGaGKSTLlkiL~Gl~~p 51 (538)
T 3ozx_A 28 LGVLGKNGVGKTTVLKILAGEIIP 51 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC
Confidence 579999999999999987555443
No 470
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=71.49 E-value=1.6 Score=47.88 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=17.9
Q ss_pred eEEEeecCCCCchhHHHHHH
Q 003444 533 KLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMK 552 (819)
-++|+|..+|||||+++|+=
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 47899999999999999874
No 471
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=71.33 E-value=1.9 Score=46.58 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=22.4
Q ss_pred HHhcceeeEEEeecCCCCchhHHHHHHH
Q 003444 526 IERRTLQKLLLVGCSGSGTSTIFKQAKI 553 (819)
Q Consensus 526 ~~~k~~vKLLLLGaGESGKSTIlKQMKI 553 (819)
.+.+..+|+.++|..++||||++.++.-
T Consensus 6 ~~~~~~~~I~iiG~~~~GKSTLi~~L~~ 33 (405)
T 2c78_A 6 VRTKPHVNVGTIGHVDHGKTTLTAALTY 33 (405)
T ss_dssp ---CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEEEcCCCCCHHHHHHHHHh
Confidence 3456789999999999999999998753
No 472
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=71.32 E-value=1.6 Score=47.25 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=22.0
Q ss_pred hcceeeEEEeecCCCCchhHHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
.+..+||+++|..++||||+++.+-
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~ 29 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAIT 29 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHh
Confidence 3457899999999999999999873
No 473
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=71.08 E-value=1.8 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=19.9
Q ss_pred eeEEEeecCCCCchhHHHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKIL 554 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKIL 554 (819)
--++|+|+.+|||||++|++=.+
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 35789999999999999998654
No 474
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=71.03 E-value=1.8 Score=49.51 Aligned_cols=28 Identities=39% Similarity=0.510 Sum_probs=23.2
Q ss_pred ceeeEEEeecCCCCchhHHHHHHHHhcC
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAKILYKA 557 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMKILy~p 557 (819)
.--++.|+|+.||||||++|-+-=++.|
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~p 407 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYDV 407 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCC
Confidence 3568899999999999999988666654
No 475
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=70.87 E-value=1.8 Score=43.52 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=19.8
Q ss_pred ceeeEEEeecCCCCchhHHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMK 552 (819)
...-+||.|+.|+||||+++.+-
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la 72 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVA 72 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHH
Confidence 34569999999999999999874
No 476
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=70.76 E-value=1.7 Score=48.66 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=20.5
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHh
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy 555 (819)
---++|+|..||||||+++|+=-+.
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3458899999999999999985443
No 477
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=70.68 E-value=1.7 Score=50.19 Aligned_cols=25 Identities=24% Similarity=0.200 Sum_probs=20.2
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
-.+.|+|+.||||||++|-+-=+..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC
Confidence 4678999999999999998754443
No 478
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=70.33 E-value=1.8 Score=47.15 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.5
Q ss_pred eeEEEeecCCCCchhHHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKI 553 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKI 553 (819)
+|+.|+|..++||||+|+.+--
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~ 23 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTR 23 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998743
No 479
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=70.14 E-value=1.8 Score=43.74 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.3
Q ss_pred eeeEEEeecCCCCchhHHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMK 552 (819)
..-+||.|+.|+||||++|.+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la 75 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVA 75 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 4578999999999999999874
No 480
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=69.84 E-value=2.2 Score=47.62 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=23.0
Q ss_pred HHhcceeeEEEeecCCCCchhHHHHHH
Q 003444 526 IERRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 526 ~~~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
...+..+|++|+|..++||||++..+-
T Consensus 219 ~~~r~~~kV~ivG~~nvGKSSLln~L~ 245 (462)
T 3geh_A 219 ELLRTGLKVAIVGRPNVGKSSLLNAWS 245 (462)
T ss_dssp HHHHHCEEEEEEECTTSSHHHHHHHHH
T ss_pred hhhcCCCEEEEEcCCCCCHHHHHHHHh
Confidence 345567899999999999999999863
No 481
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=69.84 E-value=1.8 Score=50.20 Aligned_cols=26 Identities=42% Similarity=0.351 Sum_probs=20.9
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhcC
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYKA 557 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~p 557 (819)
-.+.|+|+.||||||++|-+-=+..|
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCC
Confidence 35789999999999999987655543
No 482
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=69.71 E-value=2.2 Score=42.13 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=20.5
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
++...+++.|.+|+||||++.++-
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHH
Confidence 345778899999999999999884
No 483
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=69.69 E-value=1.9 Score=44.35 Aligned_cols=24 Identities=17% Similarity=0.439 Sum_probs=20.0
Q ss_pred cceeeEEEeecCCCCchhHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
....-++|.|..|+||||+++.+-
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~ 66 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVL 66 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHH
Confidence 345578999999999999998763
No 484
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=69.66 E-value=1.9 Score=47.01 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=18.0
Q ss_pred eEEEeecCCCCchhHHHHHH
Q 003444 533 KLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMK 552 (819)
.+.|+|++|+||||+++.+-
T Consensus 217 ~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 57899999999999998775
No 485
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=69.53 E-value=2 Score=45.05 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=20.3
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhc
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
-.++++|.+|+||||+++.+=..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678899999999999988755543
No 486
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=69.44 E-value=2.1 Score=45.54 Aligned_cols=26 Identities=19% Similarity=0.334 Sum_probs=21.8
Q ss_pred cceeeEEEeecCCCCchhHHHHHHHH
Q 003444 529 RTLQKLLLVGCSGSGTSTIFKQAKIL 554 (819)
Q Consensus 529 k~~vKLLLLGaGESGKSTIlKQMKIL 554 (819)
.+..+|.|+|.+++||||++.++-..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999987433
No 487
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=69.43 E-value=2.2 Score=46.12 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=20.9
Q ss_pred ceeeEEEeecCCCCchhHHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQMK 552 (819)
..+|+.++|..++||||++.++.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~ 24 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAIT 24 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHh
Confidence 56899999999999999999874
No 488
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=69.33 E-value=2 Score=42.27 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=18.4
Q ss_pred eeEEEeecCCCCchhHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMK 552 (819)
.-+||.|..|+||||+++.+-
T Consensus 40 ~~vll~G~~GtGKT~la~~la 60 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVA 60 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999874
No 489
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=69.23 E-value=1.9 Score=47.06 Aligned_cols=26 Identities=23% Similarity=0.155 Sum_probs=20.6
Q ss_pred eeeEEEeecCCCCchhHHHHHHHHhc
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAKILYK 556 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMKILy~ 556 (819)
.--++|+|+.||||||++|.+--..+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34688999999999999998754333
No 490
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=69.06 E-value=2.1 Score=52.12 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=17.6
Q ss_pred eEEEeecCCCCchhHHHHH
Q 003444 533 KLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQM 551 (819)
-++|+|+.+|||||++||+
T Consensus 664 i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 491
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=68.94 E-value=2.1 Score=45.35 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=18.9
Q ss_pred eeEEEeecCCCCchhHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMK 552 (819)
-+|+|+|..+|||||++..+-
T Consensus 35 p~I~vvG~~~sGKSSLln~l~ 55 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIV 55 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 389999999999999999864
No 492
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=68.60 E-value=7.6 Score=40.33 Aligned_cols=35 Identities=14% Similarity=0.035 Sum_probs=30.0
Q ss_pred cEEEEEecccccccccccccccCCCCEEEEEEeCCCcc
Q 003444 746 RYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYD 783 (819)
Q Consensus 746 ~frLiDVGGQgrsERkKWi~~FEdVtaVIFvVSLSdYD 783 (819)
++++||+ | ...+.-|..+|.+++++|+|+|+++-+
T Consensus 64 ~~~iwD~--q-er~~~l~~~~~~~ad~vilV~D~~~~~ 98 (301)
T 1u0l_A 64 SGVIENV--L-HRKNLLTKPHVANVDQVILVVTVKMPE 98 (301)
T ss_dssp SEEEEEE--C-CCSCEETTTTEESCCEEEEEECSSTTC
T ss_pred eEEEEEE--c-cccceeeccccccCCEEEEEEeCCCCC
Confidence 5789999 6 567788999999999999999998643
No 493
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=68.53 E-value=2.1 Score=47.01 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.5
Q ss_pred ceeeEEEeecCCCCchhHHHHH
Q 003444 530 TLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 530 ~~vKLLLLGaGESGKSTIlKQM 551 (819)
+..||+|+|..++||||++..+
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l 43 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRI 43 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 3569999999999999999986
No 494
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=68.44 E-value=2.1 Score=46.34 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.0
Q ss_pred hcceeeEEEeecCCCCchhHHHHHH
Q 003444 528 RRTLQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 528 ~k~~vKLLLLGaGESGKSTIlKQMK 552 (819)
.+..++++++|..++||||+++++.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~ 31 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALT 31 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHh
Confidence 3557899999999999999999874
No 495
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=68.35 E-value=2.3 Score=44.37 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=16.4
Q ss_pred eeEEEeecCCCCchhHHHHHHHH
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKIL 554 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKIL 554 (819)
.-|.|-|..+|||||+.|.+.-.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45788899999999999988653
No 496
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=68.29 E-value=2.1 Score=47.59 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHhcceeeEEEeecCCCCchhHHHHH
Q 003444 526 IERRTLQKLLLVGCSGSGTSTIFKQA 551 (819)
Q Consensus 526 ~~~k~~vKLLLLGaGESGKSTIlKQM 551 (819)
.+.+..+|++++|..++||||++.++
T Consensus 28 ~~~k~~~ki~iiG~~~~GKSTLi~~L 53 (483)
T 3p26_A 28 KSALPHLSFVVLGHVDAGKSTLMGRL 53 (483)
T ss_dssp HHSCCEEEEEEESCGGGTHHHHHHHH
T ss_pred hcCCCceEEEEECCCCCCHHHHHHHH
No 497
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=68.10 E-value=2.7 Score=47.56 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=21.7
Q ss_pred eeEEEeecCCCCchhHHHHHHHHhcC
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILYKA 557 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy~p 557 (819)
--+.|+|+.||||||++|-+--+..|
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 45779999999999999998766654
No 498
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=68.02 E-value=2.2 Score=47.26 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.1
Q ss_pred eeEEEeecCCCCchhHHHHHHHHh
Q 003444 532 QKLLLVGCSGSGTSTIFKQAKILY 555 (819)
Q Consensus 532 vKLLLLGaGESGKSTIlKQMKILy 555 (819)
.-+.|+|..||||||++|.+-=+.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 478899999999999999876443
No 499
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=68.02 E-value=2.2 Score=44.03 Aligned_cols=22 Identities=18% Similarity=0.542 Sum_probs=19.1
Q ss_pred eeeEEEeecCCCCchhHHHHHH
Q 003444 531 LQKLLLVGCSGSGTSTIFKQAK 552 (819)
Q Consensus 531 ~vKLLLLGaGESGKSTIlKQMK 552 (819)
..-+||.|+.|+||||+++++-
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~ 58 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAG 58 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 3569999999999999999873
No 500
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=67.85 E-value=1.9 Score=44.65 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.0
Q ss_pred eEEEeecCCCCchhHHHHHHH-Hhc
Q 003444 533 KLLLVGCSGSGTSTIFKQAKI-LYK 556 (819)
Q Consensus 533 KLLLLGaGESGKSTIlKQMKI-Ly~ 556 (819)
.+||.|+.|+||||++|.+-- ++.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~ 62 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFG 62 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 399999999999999998744 554
Done!