Query 003445
Match_columns 819
No_of_seqs 760 out of 3371
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 23:33:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0267 Microtubule severing p 100.0 1.5E-87 3.3E-92 741.3 39.4 775 1-816 8-808 (825)
2 PF13925 Katanin_con80: con80 100.0 3.7E-48 7.9E-53 381.2 15.3 161 656-816 1-164 (164)
3 KOG0271 Notchless-like WD40 re 100.0 1.2E-40 2.6E-45 346.8 27.0 284 10-295 109-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-39 2.8E-44 343.5 23.9 281 14-295 173-458 (459)
5 KOG0286 G-protein beta subunit 100.0 3.1E-36 6.7E-41 305.3 34.4 284 10-295 49-343 (343)
6 KOG0279 G protein beta subunit 100.0 9.2E-36 2E-40 300.5 33.5 289 7-297 6-313 (315)
7 KOG0272 U4/U6 small nuclear ri 100.0 3.3E-37 7.1E-42 325.3 19.8 249 6-254 207-458 (459)
8 cd00200 WD40 WD40 domain, foun 100.0 6E-33 1.3E-37 290.1 38.1 285 10-295 3-289 (289)
9 KOG0271 Notchless-like WD40 re 100.0 1.2E-34 2.6E-39 302.1 22.9 247 6-254 147-479 (480)
10 KOG0295 WD40 repeat-containing 100.0 4.7E-34 1E-38 296.7 23.9 286 9-295 101-404 (406)
11 KOG0285 Pleiotropic regulator 100.0 1.2E-33 2.6E-38 292.4 25.2 286 10-298 145-440 (460)
12 KOG0263 Transcription initiati 100.0 4.5E-33 9.9E-38 314.0 28.7 255 6-261 368-654 (707)
13 KOG0273 Beta-transducin family 100.0 3.7E-32 8E-37 290.3 31.4 278 16-297 235-523 (524)
14 KOG0279 G protein beta subunit 100.0 5.5E-32 1.2E-36 273.2 28.6 249 5-256 52-313 (315)
15 KOG0315 G-protein beta subunit 100.0 1.3E-31 2.7E-36 266.4 29.3 279 28-308 9-299 (311)
16 KOG0263 Transcription initiati 100.0 2.4E-32 5.2E-37 308.2 25.5 210 6-216 441-650 (707)
17 KOG0266 WD40 repeat-containing 100.0 4.4E-31 9.5E-36 303.1 35.8 287 11-298 153-455 (456)
18 KOG0286 G-protein beta subunit 100.0 7.1E-31 1.5E-35 266.4 29.7 246 7-254 88-343 (343)
19 KOG0282 mRNA splicing factor [ 100.0 2.7E-32 6E-37 292.5 18.1 287 8-295 206-503 (503)
20 KOG0645 WD40 repeat protein [G 100.0 9.9E-30 2.1E-34 255.9 34.3 287 5-297 3-311 (312)
21 KOG0265 U5 snRNP-specific prot 100.0 1.6E-30 3.5E-35 264.8 28.0 285 8-294 39-335 (338)
22 KOG0284 Polyadenylation factor 100.0 4.2E-32 9.1E-37 285.5 16.0 278 16-295 96-378 (464)
23 KOG0273 Beta-transducin family 100.0 2.5E-30 5.4E-35 276.3 28.7 295 14-310 176-495 (524)
24 PLN00181 protein SPA1-RELATED; 100.0 5.3E-29 1.2E-33 305.1 41.6 283 10-296 477-792 (793)
25 KOG0291 WD40-repeat-containing 100.0 5.4E-29 1.2E-33 278.0 37.0 288 15-303 264-556 (893)
26 KOG0315 G-protein beta subunit 100.0 2.2E-29 4.9E-34 250.4 29.8 261 6-269 30-301 (311)
27 KOG0296 Angio-associated migra 100.0 2.2E-29 4.7E-34 262.3 30.9 305 7-313 55-372 (399)
28 KOG0276 Vesicle coat complex C 100.0 3.7E-30 7.9E-35 282.0 26.0 293 11-307 8-306 (794)
29 KOG0291 WD40-repeat-containing 100.0 4E-29 8.6E-34 279.0 34.2 292 9-302 300-617 (893)
30 KOG0318 WD40 repeat stress pro 100.0 6.4E-29 1.4E-33 268.4 34.6 290 8-297 139-602 (603)
31 KOG0284 Polyadenylation factor 100.0 2.4E-31 5.1E-36 279.9 13.9 242 12-255 134-379 (464)
32 KOG0281 Beta-TrCP (transducin 100.0 4.9E-31 1.1E-35 271.8 15.0 274 15-302 196-482 (499)
33 KOG0292 Vesicle coat complex C 100.0 1.7E-29 3.6E-34 285.1 28.3 295 10-305 3-329 (1202)
34 KOG0285 Pleiotropic regulator 100.0 6.3E-30 1.4E-34 264.9 22.1 249 52-300 144-392 (460)
35 KOG0292 Vesicle coat complex C 100.0 4.1E-29 8.8E-34 282.0 28.4 284 8-306 43-357 (1202)
36 KOG0316 Conserved WD40 repeat- 100.0 8.5E-29 1.8E-33 244.5 26.7 284 6-294 7-296 (307)
37 cd00200 WD40 WD40 domain, foun 100.0 6.1E-28 1.3E-32 252.2 34.4 246 8-254 43-289 (289)
38 KOG0266 WD40 repeat-containing 100.0 1.3E-28 2.9E-33 282.6 29.4 247 8-255 195-453 (456)
39 KOG0295 WD40 repeat-containing 100.0 3.4E-29 7.3E-34 260.7 21.7 245 9-254 143-404 (406)
40 KOG0319 WD40-repeat-containing 100.0 1E-28 2.2E-33 276.0 27.0 288 10-298 317-620 (775)
41 KOG0276 Vesicle coat complex C 100.0 2.8E-28 6E-33 267.3 25.4 255 4-259 43-301 (794)
42 KOG0643 Translation initiation 100.0 1.1E-27 2.4E-32 240.5 25.0 285 11-298 5-318 (327)
43 KOG0319 WD40-repeat-containing 100.0 4.2E-28 9.2E-33 271.0 24.0 307 4-310 135-590 (775)
44 KOG0293 WD40 repeat-containing 100.0 4.6E-28 1E-32 255.0 22.1 287 8-297 216-513 (519)
45 KOG0306 WD40-repeat-containing 100.0 4.1E-27 9E-32 262.9 29.1 283 10-297 367-664 (888)
46 KOG0274 Cdc4 and related F-box 100.0 6.5E-27 1.4E-31 269.4 31.2 278 15-303 207-488 (537)
47 KOG0318 WD40 repeat stress pro 100.0 3.6E-26 7.7E-31 247.3 34.5 303 8-314 51-368 (603)
48 KOG0278 Serine/threonine kinas 100.0 5.6E-28 1.2E-32 240.3 18.6 289 10-302 8-302 (334)
49 KOG0296 Angio-associated migra 100.0 1.4E-26 3.1E-31 241.3 29.8 287 8-297 98-398 (399)
50 KOG0313 Microtubule binding pr 100.0 9.1E-27 2E-31 243.7 26.7 277 14-296 103-417 (423)
51 KOG0275 Conserved WD40 repeat- 100.0 4.4E-28 9.6E-33 247.8 16.5 280 14-295 211-507 (508)
52 KOG0265 U5 snRNP-specific prot 100.0 9.5E-27 2.1E-31 237.4 24.3 263 51-314 39-313 (338)
53 KOG0283 WD40 repeat-containing 100.0 4.4E-27 9.5E-32 267.9 24.2 293 6-303 256-582 (712)
54 PLN00181 protein SPA1-RELATED; 100.0 7.8E-26 1.7E-30 277.3 36.6 239 15-255 531-792 (793)
55 KOG0316 Conserved WD40 repeat- 100.0 1.7E-26 3.6E-31 228.3 24.0 248 51-302 9-262 (307)
56 KOG0277 Peroxisomal targeting 100.0 1.2E-26 2.6E-31 231.7 22.3 279 18-296 10-308 (311)
57 KOG0281 Beta-TrCP (transducin 99.9 2.8E-28 6.1E-33 251.5 10.8 240 8-259 229-480 (499)
58 KOG0289 mRNA splicing factor [ 99.9 2.6E-26 5.7E-31 243.4 25.2 278 17-296 220-505 (506)
59 KOG0305 Anaphase promoting com 99.9 5.4E-26 1.2E-30 253.5 28.0 273 21-299 182-463 (484)
60 PTZ00421 coronin; Provisional 99.9 2.4E-25 5.1E-30 255.9 33.5 228 11-238 70-314 (493)
61 PTZ00421 coronin; Provisional 99.9 8E-25 1.7E-29 251.5 37.7 247 16-263 20-297 (493)
62 KOG0645 WD40 repeat protein [G 99.9 7E-25 1.5E-29 221.1 30.8 249 50-303 5-267 (312)
63 KOG1407 WD40 repeat protein [F 99.9 1.9E-25 4.1E-30 224.0 26.3 275 10-288 14-293 (313)
64 KOG0310 Conserved WD40 repeat- 99.9 8.1E-26 1.8E-30 243.4 24.5 277 15-294 25-306 (487)
65 KOG1446 Histone H3 (Lys4) meth 99.9 4.1E-24 8.9E-29 220.3 35.3 290 10-303 8-309 (311)
66 KOG0274 Cdc4 and related F-box 99.9 2.3E-25 4.9E-30 256.6 28.9 250 6-264 238-490 (537)
67 KOG0288 WD40 repeat protein Ti 99.9 1.6E-26 3.5E-31 244.0 17.0 279 11-294 170-458 (459)
68 KOG0267 Microtubule severing p 99.9 6.6E-27 1.4E-31 260.6 13.5 353 28-387 3-364 (825)
69 KOG0973 Histone transcription 99.9 6.1E-25 1.3E-29 255.9 29.3 291 12-303 8-361 (942)
70 KOG0268 Sof1-like rRNA process 99.9 2.3E-26 4.9E-31 239.3 15.6 284 9-299 59-347 (433)
71 KOG0277 Peroxisomal targeting 99.9 8.4E-26 1.8E-30 225.7 18.4 240 15-254 59-307 (311)
72 PTZ00420 coronin; Provisional 99.9 9.8E-24 2.1E-28 244.0 37.5 225 35-260 50-297 (568)
73 KOG0640 mRNA cleavage stimulat 99.9 3.3E-25 7.1E-30 226.3 21.5 289 6-295 102-424 (430)
74 KOG0282 mRNA splicing factor [ 99.9 4.1E-26 8.8E-31 245.2 15.5 253 50-303 205-468 (503)
75 PTZ00420 coronin; Provisional 99.9 7.1E-24 1.5E-28 245.1 35.0 231 7-239 65-318 (568)
76 KOG0310 Conserved WD40 repeat- 99.9 7.3E-25 1.6E-29 236.1 24.7 235 15-253 67-305 (487)
77 KOG0278 Serine/threonine kinas 99.9 8.9E-26 1.9E-30 224.7 15.9 250 7-261 50-302 (334)
78 KOG0306 WD40-repeat-containing 99.9 7.1E-25 1.5E-29 245.1 24.9 247 7-257 405-665 (888)
79 KOG0300 WD40 repeat-containing 99.9 8.3E-25 1.8E-29 223.6 22.2 290 8-300 140-479 (481)
80 KOG0305 Anaphase promoting com 99.9 1.4E-24 3E-29 242.2 26.0 240 15-258 216-463 (484)
81 KOG0772 Uncharacterized conser 99.9 1.9E-24 4.1E-29 233.2 25.2 284 10-294 161-484 (641)
82 KOG0301 Phospholipase A2-activ 99.9 3.3E-24 7.1E-29 238.6 26.1 284 7-302 4-293 (745)
83 KOG0289 mRNA splicing factor [ 99.9 5.9E-24 1.3E-28 225.6 24.4 247 8-255 253-505 (506)
84 KOG0264 Nucleosome remodeling 99.9 4.2E-24 9.2E-29 228.9 23.5 251 6-256 114-404 (422)
85 KOG0275 Conserved WD40 repeat- 99.9 6.6E-25 1.4E-29 224.7 16.5 255 57-312 211-482 (508)
86 KOG0641 WD40 repeat protein [G 99.9 1.7E-22 3.6E-27 198.5 32.4 292 4-297 20-349 (350)
87 KOG0294 WD40 repeat-containing 99.9 1.7E-23 3.6E-28 214.9 26.2 263 32-300 4-284 (362)
88 KOG0647 mRNA export protein (c 99.9 8.9E-24 1.9E-28 215.9 23.3 238 15-258 26-319 (347)
89 KOG0313 Microtubule binding pr 99.9 1.4E-23 3.1E-28 219.9 24.9 250 4-256 132-418 (423)
90 KOG0973 Histone transcription 99.9 1.1E-23 2.4E-28 245.5 26.5 252 8-260 61-359 (942)
91 KOG0293 WD40 repeat-containing 99.9 6.6E-24 1.4E-28 223.8 21.9 261 51-313 216-486 (519)
92 KOG0294 WD40 repeat-containing 99.9 3.3E-23 7.3E-28 212.7 26.3 244 8-258 35-283 (362)
93 KOG0308 Conserved WD40 repeat- 99.9 2.5E-24 5.4E-29 237.9 18.3 283 14-298 19-328 (735)
94 KOG0643 Translation initiation 99.9 1E-23 2.2E-28 212.1 21.0 249 6-257 42-318 (327)
95 KOG1446 Histone H3 (Lys4) meth 99.9 5.3E-22 1.2E-26 204.8 31.6 256 50-307 5-272 (311)
96 KOG0639 Transducin-like enhanc 99.9 1.2E-23 2.6E-28 225.9 20.1 281 12-296 415-703 (705)
97 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.8E-21 6.1E-26 207.3 38.8 267 30-301 2-283 (300)
98 KOG1407 WD40 repeat protein [F 99.9 9.3E-23 2E-27 204.7 24.0 236 10-248 58-293 (313)
99 KOG0299 U3 snoRNP-associated p 99.9 1.2E-22 2.5E-27 217.7 26.2 288 9-300 135-460 (479)
100 KOG0308 Conserved WD40 repeat- 99.9 9.3E-24 2E-28 233.4 18.3 292 9-301 66-397 (735)
101 KOG0288 WD40 repeat protein Ti 99.9 1.5E-23 3.3E-28 221.6 18.5 242 7-253 210-458 (459)
102 KOG0299 U3 snoRNP-associated p 99.9 1.5E-22 3.2E-27 216.9 22.1 232 13-248 199-446 (479)
103 KOG0301 Phospholipase A2-activ 99.9 2.8E-22 6E-27 223.4 23.9 240 10-259 51-291 (745)
104 KOG2055 WD40 repeat protein [G 99.9 5.4E-22 1.2E-26 212.4 24.7 279 16-297 213-512 (514)
105 KOG0641 WD40 repeat protein [G 99.9 4.1E-21 8.8E-26 188.8 28.3 246 9-256 82-349 (350)
106 KOG2096 WD40 repeat protein [G 99.9 1.6E-21 3.6E-26 200.1 25.6 284 7-294 77-399 (420)
107 KOG1539 WD repeat protein [Gen 99.9 6E-21 1.3E-25 216.3 31.9 290 4-295 190-646 (910)
108 KOG1408 WD40 repeat protein [F 99.9 9.6E-22 2.1E-26 218.2 24.5 298 4-301 357-717 (1080)
109 KOG1274 WD40 repeat protein [G 99.9 3E-21 6.5E-26 221.0 29.2 275 13-294 10-297 (933)
110 KOG0640 mRNA cleavage stimulat 99.9 2.5E-22 5.4E-27 205.3 18.2 250 6-256 162-426 (430)
111 KOG1273 WD40 repeat protein [G 99.9 3.4E-21 7.3E-26 197.7 26.5 278 19-298 26-323 (405)
112 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.5E-20 1.9E-24 195.8 36.8 256 8-268 23-291 (300)
113 KOG2048 WD40 repeat protein [G 99.9 2.9E-20 6.3E-25 207.1 33.8 287 6-296 15-318 (691)
114 KOG0646 WD40 repeat protein [G 99.9 8.3E-22 1.8E-26 211.6 20.8 221 16-238 81-330 (476)
115 KOG1036 Mitotic spindle checkp 99.9 6.3E-21 1.4E-25 196.0 26.3 265 16-287 13-294 (323)
116 KOG0283 WD40 repeat-containing 99.9 8.7E-22 1.9E-26 224.8 21.0 207 7-218 360-579 (712)
117 KOG4283 Transcription-coupled 99.9 7.2E-21 1.6E-25 193.6 25.0 283 13-297 40-365 (397)
118 KOG0300 WD40 repeat-containing 99.9 1.8E-21 3.9E-26 199.3 19.9 255 50-306 139-437 (481)
119 KOG1332 Vesicle coat complex C 99.9 1.1E-21 2.4E-26 195.4 17.7 243 13-256 8-286 (299)
120 KOG0302 Ribosome Assembly prot 99.9 4.5E-21 9.8E-26 200.9 21.8 242 11-254 146-436 (440)
121 KOG0269 WD40 repeat-containing 99.9 5.8E-22 1.3E-26 223.0 14.6 231 18-249 89-332 (839)
122 KOG0772 Uncharacterized conser 99.9 5.1E-21 1.1E-25 206.8 21.2 239 15-254 213-485 (641)
123 KOG0269 WD40 repeat-containing 99.9 1.6E-21 3.4E-26 219.5 17.7 278 17-297 40-340 (839)
124 KOG2106 Uncharacterized conser 99.9 8.4E-20 1.8E-24 197.1 29.3 281 11-301 240-585 (626)
125 KOG0646 WD40 repeat protein [G 99.9 1.4E-20 2.9E-25 202.3 22.7 237 36-273 58-324 (476)
126 KOG0264 Nucleosome remodeling 99.9 1.6E-20 3.6E-25 201.5 21.9 241 57-297 122-404 (422)
127 KOG0639 Transducin-like enhanc 99.9 7.1E-21 1.5E-25 204.7 16.8 236 16-255 465-703 (705)
128 KOG1036 Mitotic spindle checkp 99.9 9.8E-20 2.1E-24 187.2 23.4 229 13-247 51-294 (323)
129 KOG4328 WD40 protein [Function 99.8 7.6E-20 1.6E-24 195.9 22.8 290 8-297 178-495 (498)
130 KOG1274 WD40 repeat protein [G 99.8 1.2E-19 2.6E-24 207.9 25.9 243 56-300 10-265 (933)
131 KOG2106 Uncharacterized conser 99.8 2.3E-18 5.1E-23 186.0 33.5 285 7-299 191-523 (626)
132 KOG1539 WD repeat protein [Gen 99.8 2.7E-18 5.9E-23 194.9 34.3 284 19-303 162-612 (910)
133 KOG1408 WD40 repeat protein [F 99.8 5.6E-20 1.2E-24 204.3 19.7 243 14-257 457-714 (1080)
134 KOG0268 Sof1-like rRNA process 99.8 3.5E-20 7.7E-25 193.4 15.4 245 8-260 101-349 (433)
135 KOG1063 RNA polymerase II elon 99.8 5.5E-19 1.2E-23 197.1 25.8 296 5-300 180-651 (764)
136 KOG0321 WD40 repeat-containing 99.8 2.9E-19 6.2E-24 197.8 23.3 286 22-308 55-402 (720)
137 COG2319 FOG: WD40 repeat [Gene 99.8 3.3E-17 7.1E-22 179.3 38.9 288 11-300 60-362 (466)
138 KOG0647 mRNA export protein (c 99.8 9.5E-19 2.1E-23 179.3 24.1 239 57-299 25-283 (347)
139 KOG2445 Nuclear pore complex c 99.8 1.5E-18 3.2E-23 178.2 25.2 241 13-255 10-317 (361)
140 KOG0650 WD40 repeat nucleolar 99.8 6.3E-19 1.4E-23 193.6 23.2 281 10-294 394-732 (733)
141 KOG0270 WD40 repeat-containing 99.8 3.2E-19 6.9E-24 190.8 20.2 240 20-259 177-452 (463)
142 KOG1009 Chromatin assembly com 99.8 2E-18 4.2E-23 183.0 26.0 287 16-302 13-377 (434)
143 KOG1332 Vesicle coat complex C 99.8 2.5E-19 5.4E-24 178.7 17.6 244 56-299 8-288 (299)
144 KOG2445 Nuclear pore complex c 99.8 3E-18 6.5E-23 176.0 25.0 248 56-303 10-324 (361)
145 KOG2055 WD40 repeat protein [G 99.8 1.1E-18 2.4E-23 187.2 21.8 252 4-256 245-512 (514)
146 COG2319 FOG: WD40 repeat [Gene 99.8 1.9E-16 4E-21 173.3 39.3 288 7-298 146-443 (466)
147 KOG0302 Ribosome Assembly prot 99.8 2.7E-18 5.9E-23 180.2 22.0 202 56-258 148-380 (440)
148 KOG1034 Transcriptional repres 99.8 1.8E-18 4E-23 178.8 19.5 239 15-256 88-381 (385)
149 KOG4283 Transcription-coupled 99.8 6.1E-18 1.3E-22 172.4 22.4 244 10-255 95-364 (397)
150 KOG0321 WD40 repeat-containing 99.8 1.6E-18 3.5E-23 191.9 19.5 250 8-259 92-394 (720)
151 KOG2048 WD40 repeat protein [G 99.8 4.1E-17 9E-22 182.2 29.8 288 8-300 60-364 (691)
152 KOG1273 WD40 repeat protein [G 99.8 1.1E-17 2.3E-22 172.2 23.1 245 62-309 26-292 (405)
153 KOG1272 WD40-repeat-containing 99.8 2.5E-19 5.5E-24 192.1 10.7 288 59-353 129-421 (545)
154 KOG0270 WD40 repeat-containing 99.8 9.1E-18 2E-22 179.7 22.3 241 60-301 174-453 (463)
155 KOG1538 Uncharacterized conser 99.8 5.3E-18 1.2E-22 187.4 21.1 281 18-308 14-304 (1081)
156 KOG4378 Nuclear protein COP1 [ 99.8 3.2E-18 7E-23 184.3 17.2 218 20-239 83-305 (673)
157 KOG1034 Transcriptional repres 99.8 3E-17 6.4E-22 170.0 22.9 290 4-296 24-382 (385)
158 KOG0307 Vesicle coat complex C 99.8 1.2E-18 2.6E-23 204.4 14.0 244 16-259 64-330 (1049)
159 KOG4378 Nuclear protein COP1 [ 99.8 1.5E-17 3.3E-22 179.2 19.8 259 18-279 36-304 (673)
160 KOG4328 WD40 protein [Function 99.8 1.9E-17 4E-22 177.8 20.3 256 1-257 219-494 (498)
161 KOG1063 RNA polymerase II elon 99.8 8.3E-17 1.8E-21 179.9 25.7 287 13-300 264-702 (764)
162 KOG2096 WD40 repeat protein [G 99.8 9.5E-17 2.1E-21 165.4 22.2 236 17-254 133-400 (420)
163 KOG0307 Vesicle coat complex C 99.8 3.5E-18 7.6E-23 200.5 12.5 280 20-300 10-330 (1049)
164 KOG0642 Cell-cycle nuclear pro 99.7 1.2E-17 2.7E-22 183.2 15.6 251 11-263 289-568 (577)
165 KOG1445 Tumor-specific antigen 99.7 1E-16 2.2E-21 176.5 20.5 126 5-130 68-199 (1012)
166 KOG0303 Actin-binding protein 99.7 1.2E-16 2.6E-21 168.7 19.9 206 11-218 76-297 (472)
167 KOG4227 WD40 repeat protein [G 99.7 2.6E-16 5.7E-21 165.3 22.0 289 5-295 45-385 (609)
168 PRK11028 6-phosphogluconolacto 99.7 8.1E-15 1.8E-19 161.7 34.8 265 31-298 4-305 (330)
169 KOG2110 Uncharacterized conser 99.7 1.4E-14 3.1E-19 152.6 32.7 283 16-306 5-339 (391)
170 KOG2919 Guanine nucleotide-bin 99.7 7.3E-16 1.6E-20 159.3 22.1 236 61-298 51-328 (406)
171 KOG1524 WD40 repeat-containing 99.7 1.9E-16 4E-21 172.2 18.3 263 14-293 12-282 (737)
172 KOG1188 WD40 repeat protein [G 99.7 3.6E-16 7.7E-21 162.9 19.4 266 30-296 41-345 (376)
173 KOG1007 WD repeat protein TSSC 99.7 6.3E-16 1.4E-20 157.6 19.5 238 10-249 57-353 (370)
174 KOG2919 Guanine nucleotide-bin 99.7 6.3E-16 1.4E-20 159.8 19.3 238 16-256 104-367 (406)
175 KOG0644 Uncharacterized conser 99.7 1.8E-17 3.8E-22 187.7 8.1 283 6-300 180-471 (1113)
176 KOG0650 WD40 repeat nucleolar 99.7 9E-16 1.9E-20 169.1 21.2 241 51-294 392-677 (733)
177 KOG0649 WD40 repeat protein [G 99.7 9.4E-15 2E-19 146.0 25.8 268 17-294 11-313 (325)
178 KOG0649 WD40 repeat protein [G 99.7 5.8E-15 1.2E-19 147.5 23.7 231 61-298 12-275 (325)
179 KOG1009 Chromatin assembly com 99.7 2.2E-15 4.7E-20 160.1 21.5 248 8-257 57-373 (434)
180 KOG0303 Actin-binding protein 99.7 1.4E-15 3E-20 160.7 19.4 205 54-260 76-298 (472)
181 KOG1538 Uncharacterized conser 99.7 1.2E-15 2.6E-20 169.1 19.2 244 4-256 41-293 (1081)
182 KOG1587 Cytoplasmic dynein int 99.7 3.1E-15 6.6E-20 171.9 23.4 243 15-257 241-517 (555)
183 KOG1587 Cytoplasmic dynein int 99.7 1.4E-14 3E-19 166.6 28.5 263 39-302 222-521 (555)
184 KOG0322 G-protein beta subunit 99.7 1.2E-15 2.7E-20 153.9 16.3 244 9-255 7-322 (323)
185 KOG1963 WD40 repeat protein [G 99.7 1.6E-14 3.5E-19 166.2 25.5 287 14-302 203-588 (792)
186 KOG1517 Guanine nucleotide bin 99.7 1.8E-14 3.8E-19 167.2 25.7 284 17-301 1065-1385(1387)
187 PRK11028 6-phosphogluconolacto 99.6 1E-13 2.3E-18 152.9 30.6 244 9-257 28-305 (330)
188 KOG0290 Conserved WD40 repeat- 99.6 1E-14 2.2E-19 149.1 19.4 236 14-252 94-361 (364)
189 KOG1524 WD40 repeat-containing 99.6 1.5E-14 3.2E-19 157.6 21.8 207 30-253 76-282 (737)
190 KOG1007 WD repeat protein TSSC 99.6 8.4E-15 1.8E-19 149.5 17.5 199 14-215 121-361 (370)
191 KOG1523 Actin-related protein 99.6 2.7E-14 5.8E-19 148.0 20.8 237 10-247 4-269 (361)
192 KOG1240 Protein kinase contain 99.6 4.7E-14 1E-18 166.2 25.2 252 4-256 1036-1334(1431)
193 KOG1272 WD40-repeat-containing 99.6 7.7E-16 1.7E-20 165.5 9.5 274 17-297 130-409 (545)
194 KOG0322 G-protein beta subunit 99.6 6.8E-15 1.5E-19 148.6 14.8 246 49-296 4-322 (323)
195 KOG0642 Cell-cycle nuclear pro 99.6 5.2E-15 1.1E-19 162.8 14.7 221 4-226 332-572 (577)
196 KOG1523 Actin-related protein 99.6 3.7E-14 7.9E-19 147.0 20.0 237 58-294 9-275 (361)
197 PRK01742 tolB translocation pr 99.6 4.6E-14 9.9E-19 161.5 22.9 219 9-238 196-426 (429)
198 KOG1188 WD40 repeat protein [G 99.6 3.8E-14 8.3E-19 147.9 19.0 190 72-261 41-247 (376)
199 PRK01742 tolB translocation pr 99.6 1.8E-13 4E-18 156.5 25.9 207 38-255 183-400 (429)
200 KOG2394 WD40 protein DMR-N9 [G 99.6 9.9E-14 2.2E-18 151.7 20.4 273 21-303 128-458 (636)
201 KOG1310 WD40 repeat protein [G 99.6 1.2E-14 2.6E-19 158.7 12.8 215 7-222 41-310 (758)
202 KOG1445 Tumor-specific antigen 99.6 3.4E-14 7.5E-19 156.9 16.3 240 67-309 587-854 (1012)
203 KOG0771 Prolactin regulatory e 99.6 2.9E-14 6.3E-19 152.7 15.2 194 20-216 148-355 (398)
204 KOG1963 WD40 repeat protein [G 99.6 1E-12 2.2E-17 151.6 28.8 240 58-298 204-488 (792)
205 KOG0771 Prolactin regulatory e 99.6 3.9E-14 8.4E-19 151.7 15.4 194 63-257 148-355 (398)
206 KOG1334 WD40 repeat protein [G 99.6 2.4E-14 5.2E-19 155.0 13.8 287 10-297 136-466 (559)
207 KOG4227 WD40 repeat protein [G 99.6 2.6E-13 5.6E-18 143.0 20.3 247 53-299 50-324 (609)
208 KOG2139 WD40 repeat protein [G 99.6 1.4E-12 3.1E-17 137.0 25.4 278 17-299 99-433 (445)
209 KOG0290 Conserved WD40 repeat- 99.5 2.2E-12 4.7E-17 132.2 25.3 280 5-288 34-357 (364)
210 KOG2111 Uncharacterized conser 99.5 1.1E-11 2.3E-16 128.8 30.7 234 18-257 7-257 (346)
211 KOG1240 Protein kinase contain 99.5 7.3E-13 1.6E-17 156.3 24.6 258 44-302 1034-1339(1431)
212 KOG2110 Uncharacterized conser 99.5 3.9E-12 8.5E-17 134.3 27.4 235 59-300 5-251 (391)
213 KOG1517 Guanine nucleotide bin 99.5 5.5E-13 1.2E-17 155.1 21.9 240 17-258 1110-1383(1387)
214 KOG2394 WD40 protein DMR-N9 [G 99.5 1.3E-13 2.9E-18 150.7 15.3 164 16-195 219-384 (636)
215 PRK05137 tolB translocation pr 99.5 8.4E-12 1.8E-16 143.2 30.5 203 39-247 182-396 (435)
216 KOG1310 WD40 repeat protein [G 99.5 9.3E-14 2E-18 151.8 13.4 210 52-261 43-308 (758)
217 PRK03629 tolB translocation pr 99.5 4.9E-12 1.1E-16 144.7 28.1 222 10-237 192-427 (429)
218 KOG2321 WD40 repeat protein [G 99.5 3.9E-12 8.4E-17 140.3 24.8 284 8-296 44-342 (703)
219 KOG3881 Uncharacterized conser 99.5 2.5E-12 5.4E-17 136.6 20.4 221 13-238 102-342 (412)
220 PRK04922 tolB translocation pr 99.5 1.8E-11 3.9E-16 140.3 29.4 203 39-247 184-398 (433)
221 KOG0644 Uncharacterized conser 99.5 8.1E-14 1.8E-18 158.4 9.5 252 52-313 183-443 (1113)
222 PRK03629 tolB translocation pr 99.5 3.2E-11 7E-16 138.0 30.9 211 40-256 180-406 (429)
223 KOG2111 Uncharacterized conser 99.5 3.2E-11 6.9E-16 125.4 27.2 174 39-216 75-257 (346)
224 PF02239 Cytochrom_D1: Cytochr 99.5 1.1E-10 2.3E-15 130.6 33.6 296 7-306 27-356 (369)
225 KOG4497 Uncharacterized conser 99.5 1.3E-11 2.9E-16 128.2 24.0 269 17-290 49-425 (447)
226 PRK04922 tolB translocation pr 99.5 1.1E-11 2.4E-16 142.1 26.1 222 9-237 196-432 (433)
227 PRK02889 tolB translocation pr 99.5 8.9E-12 1.9E-16 142.6 24.2 223 10-238 189-425 (427)
228 PRK02889 tolB translocation pr 99.4 2.2E-11 4.8E-16 139.3 27.4 204 39-248 176-391 (427)
229 PRK05137 tolB translocation pr 99.4 3.1E-11 6.7E-16 138.5 27.9 223 8-237 193-432 (435)
230 PF08662 eIF2A: Eukaryotic tra 99.4 1.9E-11 4.2E-16 124.5 21.6 149 105-258 9-181 (194)
231 PF08662 eIF2A: Eukaryotic tra 99.4 2.5E-11 5.5E-16 123.7 22.0 155 63-223 9-186 (194)
232 KOG3881 Uncharacterized conser 99.4 3E-11 6.5E-16 128.5 21.9 243 16-261 55-325 (412)
233 PF10282 Lactonase: Lactonase, 99.4 3.9E-09 8.5E-14 117.4 39.8 272 32-304 2-331 (345)
234 PF02239 Cytochrom_D1: Cytochr 99.4 4.2E-10 9.2E-15 125.8 31.7 272 30-302 6-307 (369)
235 KOG4497 Uncharacterized conser 99.4 4.5E-11 9.6E-16 124.4 21.7 275 21-301 13-395 (447)
236 TIGR02800 propeller_TolB tol-p 99.4 2.6E-10 5.7E-15 129.7 29.9 204 39-248 170-385 (417)
237 KOG0280 Uncharacterized conser 99.4 1E-10 2.2E-15 120.5 23.4 285 11-299 9-335 (339)
238 KOG2139 WD40 repeat protein [G 99.4 5.6E-11 1.2E-15 125.1 21.1 194 59-256 98-309 (445)
239 KOG1334 WD40 repeat protein [G 99.4 8.1E-12 1.8E-16 135.7 14.4 284 52-336 135-462 (559)
240 PRK00178 tolB translocation pr 99.3 4.3E-10 9.2E-15 128.9 27.8 223 9-237 191-427 (430)
241 PRK00178 tolB translocation pr 99.3 1.1E-09 2.4E-14 125.5 30.4 203 40-248 180-394 (430)
242 PF10282 Lactonase: Lactonase, 99.3 8.7E-09 1.9E-13 114.7 36.6 242 15-257 35-323 (345)
243 TIGR02800 propeller_TolB tol-p 99.3 6.8E-10 1.5E-14 126.4 26.4 220 9-235 182-416 (417)
244 KOG4547 WD40 repeat-containing 99.3 6.6E-10 1.4E-14 124.0 25.0 187 69-257 3-221 (541)
245 PRK01029 tolB translocation pr 99.3 1.4E-09 3.1E-14 124.3 28.0 224 12-238 180-425 (428)
246 PRK04792 tolB translocation pr 99.3 1.1E-09 2.5E-14 125.9 26.5 220 12-237 213-446 (448)
247 PRK01029 tolB translocation pr 99.3 4.4E-09 9.5E-14 120.3 30.4 220 39-261 165-408 (428)
248 KOG0974 WD-repeat protein WDR6 99.3 1.1E-10 2.3E-15 137.1 17.2 196 17-216 88-289 (967)
249 KOG2315 Predicted translation 99.3 2.7E-09 5.9E-14 118.4 27.2 276 16-302 34-395 (566)
250 PRK04792 tolB translocation pr 99.3 4E-09 8.6E-14 121.4 30.0 202 40-247 199-412 (448)
251 KOG4547 WD40 repeat-containing 99.2 1.4E-09 3.1E-14 121.4 25.1 188 27-216 3-221 (541)
252 KOG1354 Serine/threonine prote 99.2 8.6E-10 1.9E-14 115.7 19.2 246 59-305 25-367 (433)
253 KOG4190 Uncharacterized conser 99.2 6E-11 1.3E-15 129.8 10.0 242 6-254 725-986 (1034)
254 KOG2041 WD40 repeat protein [G 99.2 1.5E-09 3.3E-14 122.1 21.0 263 15-281 13-321 (1189)
255 KOG1409 Uncharacterized conser 99.2 8.4E-10 1.8E-14 115.8 17.2 213 3-216 11-271 (404)
256 KOG2315 Predicted translation 99.2 5E-09 1.1E-13 116.3 24.1 231 20-259 129-393 (566)
257 COG2706 3-carboxymuconate cycl 99.2 7.7E-08 1.7E-12 102.6 31.8 261 38-299 15-323 (346)
258 TIGR03300 assembly_YfgL outer 99.2 3.6E-08 7.7E-13 111.0 31.4 263 30-303 66-344 (377)
259 TIGR02658 TTQ_MADH_Hv methylam 99.1 2.4E-07 5.2E-12 102.1 35.8 259 39-303 27-336 (352)
260 KOG2321 WD40 repeat protein [G 99.1 2.9E-09 6.2E-14 118.0 20.6 193 62-256 136-343 (703)
261 KOG1064 RAVE (regulator of V-A 99.1 2.1E-10 4.6E-15 139.7 12.3 198 12-225 2204-2408(2439)
262 KOG1354 Serine/threonine prote 99.1 4.4E-09 9.5E-14 110.4 19.2 241 15-258 24-361 (433)
263 KOG0974 WD-repeat protein WDR6 99.1 2.1E-09 4.5E-14 126.5 18.4 196 60-258 88-290 (967)
264 TIGR03300 assembly_YfgL outer 99.1 5.3E-08 1.2E-12 109.6 28.6 255 29-294 105-376 (377)
265 TIGR02658 TTQ_MADH_Hv methylam 99.1 3.4E-07 7.4E-12 100.9 32.9 239 24-267 53-342 (352)
266 PLN02919 haloacid dehalogenase 99.0 2.5E-07 5.4E-12 116.3 34.9 238 20-260 571-892 (1057)
267 COG2706 3-carboxymuconate cycl 99.0 5E-07 1.1E-11 96.5 31.2 247 10-258 33-323 (346)
268 KOG1064 RAVE (regulator of V-A 99.0 1.2E-09 2.7E-14 133.2 12.3 193 59-264 2208-2406(2439)
269 KOG1832 HIV-1 Vpr-binding prot 99.0 1.7E-10 3.6E-15 132.2 4.1 222 7-246 1092-1320(1516)
270 PF04762 IKI3: IKI3 family; I 99.0 3.9E-07 8.5E-12 112.7 33.5 281 16-302 75-461 (928)
271 KOG2314 Translation initiation 99.0 1.1E-07 2.4E-12 105.3 24.5 275 20-299 214-527 (698)
272 COG5354 Uncharacterized protei 99.0 1.4E-07 3E-12 104.0 25.0 278 15-301 31-352 (561)
273 PF08450 SGL: SMP-30/Gluconola 99.0 1.3E-06 2.8E-11 92.3 32.1 218 21-246 4-244 (246)
274 PRK04043 tolB translocation pr 99.0 7.1E-07 1.5E-11 101.7 31.7 199 40-247 170-387 (419)
275 KOG0280 Uncharacterized conser 99.0 6.3E-08 1.4E-12 100.2 20.6 228 17-246 70-320 (339)
276 KOG4190 Uncharacterized conser 98.9 2.7E-09 5.9E-14 117.0 10.2 239 52-294 728-985 (1034)
277 KOG2314 Translation initiation 98.9 2.7E-07 5.9E-12 102.3 25.3 283 15-302 249-578 (698)
278 COG4946 Uncharacterized protei 98.9 2.2E-06 4.9E-11 93.6 30.8 176 24-204 327-507 (668)
279 COG5354 Uncharacterized protei 98.9 5.5E-07 1.2E-11 99.3 26.1 278 17-302 72-400 (561)
280 COG4946 Uncharacterized protei 98.9 1.3E-06 2.9E-11 95.3 28.3 249 28-284 235-505 (668)
281 PF13360 PQQ_2: PQQ-like domai 98.9 7.9E-07 1.7E-11 92.8 25.7 216 80-302 2-235 (238)
282 PRK04043 tolB translocation pr 98.9 8.8E-07 1.9E-11 101.0 28.0 193 18-217 189-402 (419)
283 PLN02919 haloacid dehalogenase 98.9 2.2E-06 4.8E-11 107.9 34.0 236 63-301 571-892 (1057)
284 KOG2041 WD40 repeat protein [G 98.9 6.6E-08 1.4E-12 109.3 17.6 243 10-257 65-338 (1189)
285 PF04762 IKI3: IKI3 family; I 98.9 4.3E-06 9.2E-11 103.6 35.2 239 17-259 22-336 (928)
286 KOG1912 WD40 repeat protein [G 98.9 1.3E-07 2.7E-12 108.2 19.8 289 15-306 14-373 (1062)
287 KOG0882 Cyclophilin-related pe 98.8 3.9E-08 8.4E-13 106.6 14.1 247 14-264 7-313 (558)
288 PF13360 PQQ_2: PQQ-like domai 98.8 1.4E-06 2.9E-11 91.0 25.7 218 37-261 1-235 (238)
289 KOG1912 WD40 repeat protein [G 98.8 3.1E-07 6.6E-12 105.2 21.5 238 59-298 15-305 (1062)
290 KOG4532 WD40-like repeat conta 98.8 5.7E-07 1.2E-11 92.1 21.4 228 29-256 84-331 (344)
291 PRK11138 outer membrane biogen 98.8 1.5E-06 3.3E-11 98.5 27.7 256 31-296 122-393 (394)
292 KOG0309 Conserved WD40 repeat- 98.8 6.5E-08 1.4E-12 109.8 15.9 283 16-300 24-342 (1081)
293 COG5170 CDC55 Serine/threonine 98.8 9.9E-08 2.1E-12 99.1 15.5 240 59-299 26-369 (460)
294 KOG1409 Uncharacterized conser 98.8 1.5E-07 3.3E-12 99.2 16.7 251 49-302 14-275 (404)
295 PRK11138 outer membrane biogen 98.8 3.3E-06 7.1E-11 95.8 27.8 266 31-302 71-358 (394)
296 KOG4714 Nucleoporin [Nuclear s 98.7 1.3E-07 2.9E-12 96.3 12.9 195 19-216 39-255 (319)
297 PF08450 SGL: SMP-30/Gluconola 98.7 5.3E-05 1.2E-09 80.0 32.8 213 63-283 3-241 (246)
298 COG5170 CDC55 Serine/threonine 98.7 4E-07 8.6E-12 94.7 15.6 230 16-248 26-358 (460)
299 PF07433 DUF1513: Protein of u 98.7 2.9E-05 6.2E-10 83.2 29.5 226 19-249 7-278 (305)
300 KOG3914 WD repeat protein WDR4 98.7 2.7E-07 5.9E-12 99.3 14.1 161 61-224 64-232 (390)
301 KOG3914 WD repeat protein WDR4 98.6 3E-07 6.5E-12 99.0 13.6 158 21-182 67-232 (390)
302 KOG2695 WD40 repeat protein [G 98.6 1.7E-07 3.7E-12 98.8 10.8 159 75-236 228-401 (425)
303 KOG4649 PQQ (pyrrolo-quinoline 98.6 3.7E-05 8E-10 78.9 27.1 116 23-140 17-132 (354)
304 KOG4532 WD40-like repeat conta 98.6 5.8E-06 1.3E-10 84.9 20.2 250 36-294 49-318 (344)
305 PF07433 DUF1513: Protein of u 98.6 6.3E-05 1.4E-09 80.6 28.5 222 62-287 7-276 (305)
306 KOG1275 PAB-dependent poly(A) 98.5 1.9E-06 4E-11 100.6 16.0 180 70-254 146-340 (1118)
307 KOG2695 WD40 repeat protein [G 98.5 3.3E-07 7.2E-12 96.7 9.1 184 6-194 203-401 (425)
308 KOG1832 HIV-1 Vpr-binding prot 98.5 3.9E-08 8.5E-13 113.2 2.4 202 49-264 1091-1299(1516)
309 KOG0309 Conserved WD40 repeat- 98.5 3.7E-07 8E-12 103.9 10.0 205 11-216 109-340 (1081)
310 KOG4714 Nucleoporin [Nuclear s 98.5 5.5E-07 1.2E-11 91.9 10.0 166 8-174 81-255 (319)
311 KOG1275 PAB-dependent poly(A) 98.5 2E-06 4.4E-11 100.3 15.9 180 29-213 147-340 (1118)
312 KOG1645 RING-finger-containing 98.5 7.9E-06 1.7E-10 88.1 18.5 246 7-257 184-462 (463)
313 cd00216 PQQ_DH Dehydrogenases 98.5 6.6E-05 1.4E-09 87.6 28.0 265 31-303 63-430 (488)
314 KOG2066 Vacuolar assembly/sort 98.5 2.1E-06 4.5E-11 99.4 14.8 181 102-297 40-233 (846)
315 KOG2066 Vacuolar assembly/sort 98.4 1.3E-05 2.7E-10 93.1 20.6 181 60-256 40-233 (846)
316 PF15492 Nbas_N: Neuroblastoma 98.3 0.0004 8.7E-09 72.7 26.9 231 22-265 3-268 (282)
317 KOG2114 Vacuolar assembly/sort 98.3 8.9E-05 1.9E-09 86.8 24.2 199 66-265 30-252 (933)
318 KOG1920 IkappaB kinase complex 98.3 0.00035 7.5E-09 84.8 28.8 198 60-259 69-325 (1265)
319 KOG1645 RING-finger-containing 98.3 5.6E-05 1.2E-09 81.7 20.1 253 41-297 175-461 (463)
320 PF15492 Nbas_N: Neuroblastoma 98.3 0.00014 3.1E-09 76.0 22.5 197 18-226 45-270 (282)
321 KOG1920 IkappaB kinase complex 98.3 0.00018 4E-09 87.1 26.3 233 17-255 69-364 (1265)
322 KOG2114 Vacuolar assembly/sort 98.3 0.00011 2.3E-09 86.1 22.6 220 18-245 27-271 (933)
323 PRK02888 nitrous-oxide reducta 98.2 0.00042 9.1E-09 80.7 26.9 260 31-298 68-405 (635)
324 PRK02888 nitrous-oxide reducta 98.2 0.00072 1.6E-08 78.8 26.5 210 67-285 200-449 (635)
325 PF00400 WD40: WD domain, G-be 98.1 1.1E-05 2.3E-10 59.4 6.8 39 175-213 1-39 (39)
326 PF08596 Lgl_C: Lethal giant l 98.1 0.0008 1.7E-08 76.0 24.9 235 18-254 3-333 (395)
327 PF00400 WD40: WD domain, G-be 98.1 1.1E-05 2.4E-10 59.3 6.7 39 91-129 1-39 (39)
328 PF06977 SdiA-regulated: SdiA- 98.1 0.0018 3.9E-08 68.4 25.2 199 11-212 16-247 (248)
329 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0041 8.9E-08 64.2 26.4 235 71-309 23-269 (354)
330 cd00216 PQQ_DH Dehydrogenases 98.0 0.003 6.6E-08 73.8 29.2 234 30-268 111-436 (488)
331 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.0079 1.7E-07 70.8 32.1 188 31-220 71-338 (527)
332 KOG0882 Cyclophilin-related pe 98.0 2.6E-05 5.6E-10 85.2 10.1 203 58-263 8-238 (558)
333 KOG3617 WD40 and TPR repeat-co 98.0 0.00022 4.8E-09 82.9 17.8 113 16-131 15-131 (1416)
334 PF06977 SdiA-regulated: SdiA- 98.0 0.0022 4.9E-08 67.7 23.4 193 54-248 16-242 (248)
335 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.0032 7E-08 70.4 26.0 245 38-285 22-345 (353)
336 PF00780 CNH: CNH domain; Int 97.9 0.0091 2E-07 64.0 27.8 230 69-310 5-268 (275)
337 KOG1008 Uncharacterized conser 97.9 3.8E-06 8.2E-11 95.0 1.5 197 16-215 56-275 (783)
338 COG3391 Uncharacterized conser 97.9 0.017 3.6E-07 65.4 30.7 242 18-263 32-290 (381)
339 PF00780 CNH: CNH domain; Int 97.9 0.01 2.2E-07 63.6 27.5 225 28-267 6-266 (275)
340 COG3391 Uncharacterized conser 97.9 0.0076 1.6E-07 68.2 27.3 217 19-238 76-309 (381)
341 KOG3617 WD40 and TPR repeat-co 97.8 0.00046 1E-08 80.4 17.0 110 62-173 18-131 (1416)
342 PF04841 Vps16_N: Vps16, N-ter 97.8 0.014 3E-07 66.7 29.2 206 40-254 62-285 (410)
343 KOG3621 WD40 repeat-containing 97.8 0.00014 3E-09 83.8 12.7 195 58-256 32-244 (726)
344 COG3386 Gluconolactonase [Carb 97.8 0.0072 1.6E-07 66.0 25.1 222 21-248 29-276 (307)
345 COG0823 TolB Periplasmic compo 97.8 0.0016 3.5E-08 74.3 20.6 195 7-205 183-389 (425)
346 KOG3621 WD40 repeat-containing 97.8 0.0012 2.5E-08 76.4 19.0 133 28-161 44-187 (726)
347 PF04053 Coatomer_WDAD: Coatom 97.8 0.012 2.7E-07 67.4 27.5 175 58-252 31-219 (443)
348 PF11768 DUF3312: Protein of u 97.8 0.0018 3.9E-08 73.9 19.7 115 17-133 206-331 (545)
349 PF02897 Peptidase_S9_N: Proly 97.8 0.032 6.9E-07 63.7 30.5 241 62-305 126-412 (414)
350 COG0823 TolB Periplasmic compo 97.8 0.0013 2.9E-08 74.9 19.0 194 49-246 182-388 (425)
351 PF11768 DUF3312: Protein of u 97.7 0.0026 5.7E-08 72.6 20.8 116 60-177 206-333 (545)
352 PF06433 Me-amine-dh_H: Methyl 97.7 0.038 8.3E-07 60.3 28.7 265 39-309 17-332 (342)
353 PF08553 VID27: VID27 cytoplas 97.7 0.0026 5.7E-08 76.7 21.8 193 15-214 429-646 (794)
354 PF02897 Peptidase_S9_N: Proly 97.7 0.024 5.3E-07 64.6 28.8 239 19-259 126-407 (414)
355 PF06433 Me-amine-dh_H: Methyl 97.6 0.063 1.4E-06 58.7 28.2 240 21-265 40-329 (342)
356 PF14583 Pectate_lyase22: Olig 97.6 0.088 1.9E-06 58.6 29.3 261 45-308 16-339 (386)
357 PF00930 DPPIV_N: Dipeptidyl p 97.5 0.016 3.5E-07 64.7 23.4 227 16-246 42-346 (353)
358 PF04053 Coatomer_WDAD: Coatom 97.5 0.026 5.7E-07 64.8 25.2 226 9-256 25-262 (443)
359 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.069 1.5E-06 63.0 29.0 236 31-268 122-502 (527)
360 PF08596 Lgl_C: Lethal giant l 97.5 0.021 4.4E-07 64.7 23.0 228 61-298 3-291 (395)
361 KOG2395 Protein involved in va 97.5 0.015 3.2E-07 65.6 21.1 142 70-215 344-500 (644)
362 PF14583 Pectate_lyase22: Olig 97.5 0.15 3.2E-06 56.8 28.8 274 23-299 42-383 (386)
363 KOG1008 Uncharacterized conser 97.4 3.9E-05 8.4E-10 87.1 0.7 196 58-255 55-274 (783)
364 PF04841 Vps16_N: Vps16, N-ter 97.4 0.066 1.4E-06 61.1 26.5 230 9-263 73-321 (410)
365 PF08553 VID27: VID27 cytoplas 97.3 0.0043 9.4E-08 74.9 16.0 135 120-255 501-646 (794)
366 PF03178 CPSF_A: CPSF A subuni 97.3 0.052 1.1E-06 59.8 23.6 170 40-215 3-202 (321)
367 COG3386 Gluconolactonase [Carb 97.2 0.14 3.1E-06 56.0 25.4 215 65-285 30-273 (307)
368 PF05096 Glu_cyclase_2: Glutam 97.2 0.26 5.7E-06 52.2 25.9 192 51-248 35-251 (264)
369 KOG4640 Anaphase-promoting com 97.1 0.0022 4.8E-08 73.3 9.7 94 101-195 20-115 (665)
370 PF03178 CPSF_A: CPSF A subuni 97.1 0.1 2.3E-06 57.4 22.8 178 29-211 42-261 (321)
371 PHA02713 hypothetical protein; 97.0 0.043 9.3E-07 65.2 20.8 220 82-309 273-545 (557)
372 PHA02713 hypothetical protein; 97.0 0.042 9.1E-07 65.3 20.4 203 40-249 273-523 (557)
373 KOG4640 Anaphase-promoting com 97.0 0.0034 7.3E-08 71.9 9.8 94 59-153 20-115 (665)
374 PRK13616 lipoprotein LpqB; Pro 96.9 0.057 1.2E-06 64.3 20.4 202 38-249 328-560 (591)
375 TIGR03074 PQQ_membr_DH membran 96.9 0.22 4.7E-06 61.0 25.7 193 31-224 196-486 (764)
376 KOG4441 Proteins containing BT 96.9 0.05 1.1E-06 64.7 19.9 230 68-302 282-551 (571)
377 KOG2395 Protein involved in va 96.9 0.012 2.6E-07 66.4 13.5 138 116-255 349-499 (644)
378 COG3204 Uncharacterized protei 96.9 0.18 3.9E-06 53.6 21.3 193 56-249 82-305 (316)
379 PRK13616 lipoprotein LpqB; Pro 96.9 0.088 1.9E-06 62.7 21.6 170 80-256 328-525 (591)
380 COG3490 Uncharacterized protei 96.8 0.19 4.2E-06 53.0 20.4 201 103-303 69-316 (366)
381 KOG4441 Proteins containing BT 96.8 0.073 1.6E-06 63.3 19.7 212 28-248 284-532 (571)
382 PRK10115 protease 2; Provision 96.7 2.3 5.1E-05 51.9 34.1 235 18-259 128-397 (686)
383 PF14870 PSII_BNR: Photosynthe 96.7 1.3 2.8E-05 48.4 33.7 281 3-294 4-301 (302)
384 smart00320 WD40 WD40 repeats. 96.6 0.0062 1.3E-07 42.0 6.0 39 133-171 2-40 (40)
385 smart00320 WD40 WD40 repeats. 96.6 0.0054 1.2E-07 42.3 5.6 39 49-87 2-40 (40)
386 PRK13684 Ycf48-like protein; P 96.6 1.6 3.5E-05 48.4 32.0 279 4-295 34-329 (334)
387 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.097 2.1E-06 48.0 14.6 101 19-126 2-109 (111)
388 PF14870 PSII_BNR: Photosynthe 96.6 1.6 3.4E-05 47.7 26.4 223 19-250 64-298 (302)
389 PRK10115 protease 2; Provision 96.5 3.2 6.8E-05 50.8 32.3 192 61-256 128-346 (686)
390 KOG1897 Damage-specific DNA bi 96.5 3.3 7.2E-05 50.7 32.1 281 16-300 530-901 (1096)
391 COG3490 Uncharacterized protei 96.5 0.7 1.5E-05 49.0 21.7 231 61-294 69-345 (366)
392 PHA03098 kelch-like protein; P 96.4 0.1 2.2E-06 61.7 17.7 183 28-218 294-514 (534)
393 PF05096 Glu_cyclase_2: Glutam 96.3 1.9 4.1E-05 45.9 26.8 192 7-204 33-249 (264)
394 PF05694 SBP56: 56kDa selenium 96.3 0.94 2E-05 51.1 23.0 219 28-246 86-392 (461)
395 KOG2444 WD40 repeat protein [G 96.3 0.0048 1E-07 63.0 4.6 140 74-216 33-178 (238)
396 PF14783 BBS2_Mid: Ciliary BBS 96.3 0.29 6.4E-06 44.9 15.6 100 62-168 2-109 (111)
397 PF15390 DUF4613: Domain of un 96.3 0.36 7.9E-06 55.7 19.7 150 102-259 20-187 (671)
398 KOG4499 Ca2+-binding protein R 96.2 0.7 1.5E-05 47.7 19.2 217 24-245 22-272 (310)
399 TIGR03074 PQQ_membr_DH membran 96.1 1.1 2.4E-05 55.0 24.5 112 71-183 194-354 (764)
400 KOG2079 Vacuolar assembly/sort 96.0 0.09 1.9E-06 64.0 13.8 99 30-130 100-202 (1206)
401 PRK13684 Ycf48-like protein; P 96.0 2.9 6.3E-05 46.4 25.3 149 101-254 172-329 (334)
402 KOG1916 Nuclear protein, conta 95.9 0.0054 1.2E-07 72.5 3.3 174 13-220 129-328 (1283)
403 PHA02790 Kelch-like protein; P 95.8 0.36 7.7E-06 56.4 18.3 183 28-218 271-473 (480)
404 PHA03098 kelch-like protein; P 95.8 0.23 5E-06 58.7 16.9 147 70-219 294-468 (534)
405 KOG2079 Vacuolar assembly/sort 95.7 0.031 6.6E-07 67.8 8.4 100 113-214 99-202 (1206)
406 PF10647 Gmad1: Lipoprotein Lp 95.7 3.5 7.5E-05 43.9 23.4 144 61-207 25-187 (253)
407 COG3204 Uncharacterized protei 95.6 1.6 3.4E-05 46.7 19.9 169 12-182 81-271 (316)
408 PF14655 RAB3GAP2_N: Rab3 GTPa 95.6 5.6 0.00012 45.3 25.7 43 186-228 308-350 (415)
409 PF10647 Gmad1: Lipoprotein Lp 95.4 3.7 8E-05 43.7 22.4 144 103-249 25-187 (253)
410 TIGR02604 Piru_Ver_Nterm putat 95.3 6.6 0.00014 44.2 25.6 150 8-162 3-202 (367)
411 KOG4499 Ca2+-binding protein R 95.3 1.8 3.9E-05 44.7 18.2 136 59-195 108-263 (310)
412 PF07995 GSDH: Glucose / Sorbo 95.2 6.5 0.00014 43.6 26.7 225 18-248 3-326 (331)
413 KOG1916 Nuclear protein, conta 95.1 0.016 3.4E-07 68.8 3.6 173 55-261 128-328 (1283)
414 PF14727 PHTB1_N: PTHB1 N-term 95.1 8 0.00017 44.2 31.2 151 19-172 22-203 (418)
415 smart00036 CNH Domain found in 95.1 6.5 0.00014 43.0 28.2 228 30-266 14-280 (302)
416 PF15390 DUF4613: Domain of un 95.1 0.69 1.5E-05 53.5 16.1 148 17-173 20-186 (671)
417 KOG2444 WD40 repeat protein [G 94.9 0.077 1.7E-06 54.4 7.4 105 28-132 69-178 (238)
418 PF14655 RAB3GAP2_N: Rab3 GTPa 94.8 9.5 0.00021 43.5 25.1 83 142-224 306-407 (415)
419 PHA02790 Kelch-like protein; P 94.8 1.2 2.5E-05 52.2 18.0 183 112-300 271-473 (480)
420 KOG1897 Damage-specific DNA bi 94.6 3.8 8.3E-05 50.2 21.1 152 18-173 776-942 (1096)
421 KOG3630 Nuclear pore complex, 94.3 0.29 6.4E-06 60.0 11.4 179 64-244 46-260 (1405)
422 TIGR03118 PEPCTERM_chp_1 conse 94.2 9.7 0.00021 41.2 24.0 217 18-237 24-307 (336)
423 TIGR03547 muta_rot_YjhT mutatr 94.2 11 0.00025 41.7 23.5 95 28-122 17-128 (346)
424 PF12234 Rav1p_C: RAVE protein 94.1 1.7 3.6E-05 51.9 16.9 110 145-255 31-155 (631)
425 COG1520 FOG: WD40-like repeat 94.0 13 0.00027 41.8 29.8 193 31-226 70-279 (370)
426 COG1520 FOG: WD40-like repeat 94.0 13 0.00028 41.7 24.4 150 69-222 67-224 (370)
427 COG5276 Uncharacterized conser 93.7 12 0.00025 40.3 29.1 271 16-296 86-368 (370)
428 TIGR02604 Piru_Ver_Nterm putat 93.5 2.5 5.4E-05 47.6 16.7 141 60-204 14-202 (367)
429 KOG3630 Nuclear pore complex, 93.5 0.55 1.2E-05 57.7 11.6 142 61-204 102-262 (1405)
430 PF05694 SBP56: 56kDa selenium 93.5 17 0.00037 41.4 26.4 209 49-257 52-343 (461)
431 TIGR03548 mutarot_permut cycli 93.1 15 0.00032 40.4 21.8 134 70-206 72-233 (323)
432 KOG2280 Vacuolar assembly/sort 92.7 4.7 0.0001 48.1 17.2 195 39-239 64-271 (829)
433 COG5167 VID27 Protein involved 92.7 1.4 3E-05 50.1 12.4 138 116-256 483-632 (776)
434 PF10168 Nup88: Nuclear pore c 92.6 6.2 0.00014 48.3 19.1 93 102-217 85-181 (717)
435 PLN02153 epithiospecifier prot 92.5 20 0.00044 39.6 25.4 187 28-218 32-287 (341)
436 PF12894 Apc4_WD40: Anaphase-p 92.4 0.36 7.7E-06 37.3 5.4 36 14-51 9-44 (47)
437 PF12894 Apc4_WD40: Anaphase-p 92.4 0.36 7.7E-06 37.3 5.4 35 185-220 11-45 (47)
438 PF12234 Rav1p_C: RAVE protein 92.4 4.4 9.5E-05 48.4 16.9 112 102-215 30-156 (631)
439 PLN00033 photosystem II stabil 92.1 25 0.00055 40.0 34.5 144 146-294 241-396 (398)
440 PLN02193 nitrile-specifier pro 92.1 13 0.00029 43.3 20.6 188 28-219 175-414 (470)
441 PLN00033 photosystem II stabil 92.0 26 0.00057 39.9 26.4 142 104-250 241-393 (398)
442 COG5167 VID27 Protein involved 91.8 2 4.4E-05 48.8 12.4 143 69-215 477-632 (776)
443 PF03022 MRJP: Major royal jel 91.8 22 0.00048 38.6 24.2 163 82-245 35-253 (287)
444 TIGR03547 muta_rot_YjhT mutatr 91.8 24 0.00053 39.0 22.0 53 112-164 63-128 (346)
445 PRK14131 N-acetylneuraminic ac 91.6 22 0.00048 40.0 21.2 95 28-122 38-149 (376)
446 PLN02153 epithiospecifier prot 91.1 28 0.00061 38.5 22.2 133 82-219 51-229 (341)
447 COG3823 Glutamine cyclotransfe 90.9 9.7 0.00021 39.0 15.0 171 28-203 55-247 (262)
448 KOG2280 Vacuolar assembly/sort 90.9 8.8 0.00019 45.9 16.9 179 80-264 63-254 (829)
449 KOG2063 Vacuolar assembly/sort 90.9 11 0.00025 46.6 18.6 250 28-286 25-297 (877)
450 COG4590 ABC-type uncharacteriz 90.2 0.5 1.1E-05 52.8 5.8 176 95-272 214-402 (733)
451 COG3823 Glutamine cyclotransfe 89.9 16 0.00035 37.4 15.6 172 70-245 55-247 (262)
452 PRK14131 N-acetylneuraminic ac 89.9 38 0.00083 38.1 22.1 53 112-164 84-149 (376)
453 PF05935 Arylsulfotrans: Aryls 89.6 12 0.00027 43.6 17.2 150 31-185 117-313 (477)
454 PF05935 Arylsulfotrans: Aryls 89.1 18 0.00039 42.2 18.1 151 73-228 117-314 (477)
455 PF03022 MRJP: Major royal jel 88.8 39 0.00085 36.7 20.1 164 39-203 34-253 (287)
456 PF13449 Phytase-like: Esteras 88.7 26 0.00056 38.8 18.2 143 101-244 19-231 (326)
457 TIGR03548 mutarot_permut cycli 88.7 19 0.00042 39.4 17.2 106 28-135 72-198 (323)
458 COG3292 Predicted periplasmic 88.6 35 0.00075 40.0 18.8 235 15-257 163-405 (671)
459 PF08801 Nucleoporin_N: Nup133 88.1 27 0.00058 40.0 18.5 32 185-216 189-220 (422)
460 COG5290 IkappaB kinase complex 88.0 15 0.00033 44.1 15.9 92 147-240 250-349 (1243)
461 PLN02193 nitrile-specifier pro 87.9 42 0.00092 39.1 20.1 145 71-219 176-355 (470)
462 PF13449 Phytase-like: Esteras 87.7 32 0.0007 37.9 18.2 143 59-202 19-231 (326)
463 KOG1983 Tomosyn and related SN 87.3 16 0.00034 46.6 17.0 233 60-305 36-272 (993)
464 KOG2247 WD40 repeat-containing 87.2 0.077 1.7E-06 59.6 -2.9 141 105-247 38-179 (615)
465 PF08728 CRT10: CRT10; InterP 87.1 14 0.00031 44.7 15.5 143 29-173 49-246 (717)
466 PF14761 HPS3_N: Hermansky-Pud 87.0 28 0.00061 35.9 15.5 139 114-256 29-214 (215)
467 PF14781 BBS2_N: Ciliary BBSom 86.9 22 0.00047 34.0 13.6 114 64-181 3-133 (136)
468 KOG2247 WD40 repeat-containing 86.7 0.089 1.9E-06 59.1 -2.7 147 19-169 37-184 (615)
469 PF08728 CRT10: CRT10; InterP 86.1 7.3 0.00016 47.1 12.4 113 18-131 102-246 (717)
470 KOG1983 Tomosyn and related SN 86.0 9 0.0002 48.7 13.9 26 194-219 243-268 (993)
471 PF10395 Utp8: Utp8 family; I 85.7 92 0.002 37.7 24.1 234 23-261 34-310 (670)
472 COG1506 DAP2 Dipeptidyl aminop 85.5 94 0.002 37.6 26.3 285 11-302 54-389 (620)
473 PF07995 GSDH: Glucose / Sorbo 85.1 25 0.00054 39.0 15.5 103 61-165 3-135 (331)
474 KOG1900 Nuclear pore complex, 85.0 10 0.00022 48.1 13.2 138 78-216 96-273 (1311)
475 PF07569 Hira: TUP1-like enhan 85.0 6.7 0.00015 40.8 10.3 64 193-256 18-95 (219)
476 PF10313 DUF2415: Uncharacteri 84.9 3.1 6.7E-05 31.5 5.5 32 17-48 1-34 (43)
477 KOG2377 Uncharacterized conser 84.3 15 0.00033 41.6 12.8 137 37-175 41-187 (657)
478 PF07569 Hira: TUP1-like enhan 83.4 8.8 0.00019 39.9 10.4 67 151-218 18-98 (219)
479 COG4257 Vgb Streptogramin lyas 82.5 75 0.0016 34.1 21.2 245 60-308 62-316 (353)
480 PF02333 Phytase: Phytase; In 82.2 95 0.002 35.1 22.2 184 69-257 66-291 (381)
481 PF14761 HPS3_N: Hermansky-Pud 81.6 28 0.00061 35.9 12.8 102 156-258 29-165 (215)
482 PF14781 BBS2_N: Ciliary BBSom 80.7 53 0.0012 31.4 13.3 111 108-222 5-132 (136)
483 COG5276 Uncharacterized conser 80.6 90 0.002 33.8 27.3 152 59-219 86-245 (370)
484 KOG4460 Nuclear pore complex, 80.6 28 0.0006 40.2 13.3 98 103-222 105-205 (741)
485 KOG1900 Nuclear pore complex, 80.5 17 0.00038 46.1 12.8 138 36-174 96-273 (1311)
486 KOG1898 Splicing factor 3b, su 80.2 1.7E+02 0.0038 36.9 30.2 98 191-291 939-1042(1205)
487 PF10433 MMS1_N: Mono-function 80.1 1.3E+02 0.0028 35.3 26.5 226 27-260 220-480 (504)
488 PF10168 Nup88: Nuclear pore c 79.2 67 0.0014 39.5 17.2 28 186-214 85-112 (717)
489 PF12768 Rax2: Cortical protei 78.8 29 0.00063 37.5 12.6 114 122-236 15-145 (281)
490 PF10313 DUF2415: Uncharacteri 78.4 7.9 0.00017 29.3 5.7 31 186-216 1-34 (43)
491 PF10433 MMS1_N: Mono-function 78.3 1.5E+02 0.0032 34.9 28.1 230 68-303 219-482 (504)
492 PF07250 Glyoxal_oxid_N: Glyox 77.8 21 0.00046 37.7 10.9 142 83-226 48-208 (243)
493 PRK05560 DNA gyrase subunit A; 77.5 2E+02 0.0043 36.1 26.6 206 29-239 548-793 (805)
494 smart00036 CNH Domain found in 77.3 1.2E+02 0.0025 33.2 25.5 205 14-225 40-280 (302)
495 PF12768 Rax2: Cortical protei 77.2 30 0.00065 37.5 12.1 94 39-133 16-125 (281)
496 PF14727 PHTB1_N: PTHB1 N-term 76.8 1.5E+02 0.0032 34.1 27.0 143 70-215 36-204 (418)
497 PF07250 Glyoxal_oxid_N: Glyox 76.3 20 0.00043 37.9 10.2 136 125-261 48-202 (243)
498 TIGR03118 PEPCTERM_chp_1 conse 75.4 1.3E+02 0.0028 32.9 23.6 203 61-264 24-287 (336)
499 KOG2377 Uncharacterized conser 75.2 59 0.0013 37.1 13.7 151 63-216 26-186 (657)
500 PF08801 Nucleoporin_N: Nup133 75.1 1.4E+02 0.003 34.1 17.8 30 228-257 190-220 (422)
No 1
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.5e-87 Score=741.28 Aligned_cols=775 Identities=46% Similarity=0.663 Sum_probs=594.5
Q ss_pred CCCcccceE-----EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEE
Q 003445 1 MTTKRAYKL-----QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVA 75 (819)
Q Consensus 1 M~tkr~~kl-----~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~La 75 (819)
|.+++.+++ +++.+|...|.|+.. ....+.+++|+.|..+.+|.+.....+..+.+|..+|.++.|++++.+|+
T Consensus 8 m~~~~~t~Lr~~~~~~~~~hsaav~~lk~-~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 8 MKTKRATKLRVWDTREFVAHSAAVGCLKI-RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred ceeeeeeccccccchhhhhhhhhhceeee-eccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhc
Confidence 678888888 699999999999999 55889999999999999999999999999999999999999999999999
Q ss_pred EEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCC
Q 003445 76 AGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDG 155 (819)
Q Consensus 76 sgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg 155 (819)
+|+.+|+|++||++.++.++++.+|...+.+++|+|.+.|++.|+.|+.+++||++...|.+.+++|...+.++.|+|+|
T Consensus 87 agsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~G 166 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDG 166 (825)
T ss_pred ccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEE
Q 003445 156 RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTF 235 (819)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~f 235 (819)
+|++.|++|..++|||+..|+.+.+|+.|.+.+..+.|||...+++.|+.|++++|||+++++.+...++...+|.+..|
T Consensus 167 r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~f 246 (825)
T KOG0267|consen 167 RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAF 246 (825)
T ss_pred ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEECCCEE------------EEEecCCceeeeeeccccceeEeEecCCCEEE--EEEcCCeEEEEEecCCce
Q 003445 236 NPDGRTLLCGLHESLK------------VFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLG--CSYNQSCVGVWVVDISRI 301 (819)
Q Consensus 236 spdg~~Lasgs~d~I~------------Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa--~~~~Dg~V~IW~ld~~~~ 301 (819)
+|+|..+++|....+. ++.|++..+..++...+.....+......+.. .+..+..-++.+...
T Consensus 247 n~~~~~~~~G~q~sl~~~~~a~ah~~~~~~~~Ep~~~~~~vqs~~~~ek~v~v~~d~~~ln~~~s~~~~~kl~~~~~--- 323 (825)
T KOG0267|consen 247 NPDGKIVLSGEQISLSESRTASAHVRKTLARWEPEMDGAVVQSNSHKEKVVAVGRDPQDLNAFSSKVNLSKLEDSTY--- 323 (825)
T ss_pred cCCceeeecCchhhhhhhhcccceeeccccccccccccceeeecCCcccccccccCccccccccccccccccccccc---
Confidence 9999999999777655 34455544444444444333332221111110 111111111100000
Q ss_pred eeeeecccceeccccccccCCCCCcccccccccccccCCCccc-CCCccccccccccCcccccCCCCccccccccccccc
Q 003445 302 EPYTIGSVTRVNGLSESKSSASGNLSVLNENSAKASLGKLSVS-QNSDPLVKETKSLGRLSVSQNSDPLLKETKTLGRLS 380 (819)
Q Consensus 302 ~p~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (819)
.++ ..+-..+++++++ +..++..+.++.-++-+.+++++....+.+..+...
T Consensus 324 ------------------------~p~---l~~t~~l~rl~~S~q~dep~~~~~k~~~~s~t~~~s~~~~~~s~P~~r~~ 376 (825)
T KOG0267|consen 324 ------------------------VPL---LKETKSLGRLSVSYQTDEPLDKSTKPHRRSSTSQNSDRSEVESKPLTRES 376 (825)
T ss_pred ------------------------cce---eccccchhccccccccCCCcccCCCCcccccccccccccccccCcccccc
Confidence 000 0011123333333 233333333332233345555554444444443333
Q ss_pred ccCCCCccccccccccCCCCCCCCcccccCCCCCc-ccccc---ccccccccccccccCCCcCcccCCCCccccccCCCC
Q 003445 381 VSQNSEPAKESKVLSSTGSVPGTPQRVNLNMGSKT-SVVNS---TAVVSKRTSTRANTASNVPILNKSDIVPVIVPRTNT 456 (819)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~ 456 (819)
.....++.+...-+.+.+.++..|.|....+.++. +++.+ .++.++....++++++... ....|..||+.+ ..+
T Consensus 377 s~~~~di~~~s~~lss~e~~~~~P~r~s~tn~~k~~sgvSs~~~rs~ts~~~~~k~n~ka~~~-~~e~~~~~v~~~-~~p 454 (825)
T KOG0267|consen 377 SNLSPDIPKESRTLSSTESNSEYPHRVSPTNPVKIVSGVSSSVTRSPTSPVNPGKANPKAEIA-SVEQDNNPVIQD-PLP 454 (825)
T ss_pred CCCCcccccccccccccccCCCCCCcccccCccccccccccccccCCCCCCCccccCcccccc-ccccccccccCC-Ccc
Confidence 22233333344455566677888888887766666 66543 4455555555666655432 235567788776 555
Q ss_pred ccccccccccccccccccCCCccCccccccccccCCCCCCCCcccccccccCCCCccccccccccc--cccccccccccc
Q 003445 457 RFEQAVESRKDIDVIGRTMPFSLQSKATDSRKFQNSGDEVDQPAVSVLCENTGSKATEVSSVADRN--TFAAIKGSIQGV 534 (819)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 534 (819)
..+.+.......+...|++|.++++.+.+.| ++.++++..++. ...+.+++....+.-...++ +++....+.+.
T Consensus 455 ~~~q~~Esp~~~~~~arttP~s~~P~~~~~r--~~~rs~~~~~~s-t~~~rtssspvmpv~lp~~s~~ty~~~~v~a~~- 530 (825)
T KOG0267|consen 455 TIEQATESPVPSTRIARTTPASVQPIALNSR--SNSRSDPPPPTS-TVPERTSSSPVMPVILPQASMSTYPEPPVGASS- 530 (825)
T ss_pred cccccccCccccccccccCCccccccccccc--ccCCCCCCCccc-ccccccccCCccccccCCCcccccCCCCccccC-
Confidence 5556666666667677889999998777777 667777755543 33455566666666555555 67766665432
Q ss_pred cccccCCcccceeeccCCCCCcCCCCCCCcccccccccCCCCCCCCCcccccccCccccccccccccCCCCCCCCCCCCC
Q 003445 535 SVTERNSKEDIFTVSGKSGTMSMSESPASYEDERYDSLGHKSNRDGYAMESQKRGRMHSLVINWEKRGSSPNYDGPTSSI 614 (819)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (819)
.++.......+-.|++++..+.++.+....+.++.+..--. -.+++-.++.++-.+..++++|...+.+...|...+
T Consensus 531 -~a~~s~~r~~~~~~~~a~~~~~~~~~~~l~r~r~~~pa~~~--~tk~~~~~~~t~~~s~iasr~r~s~t~~~~tPa~~~ 607 (825)
T KOG0267|consen 531 -TARTSSARILPVTFNQANNISSEEAPVTLRRQRRNSPARVM--PTKLNQSVNMTSDTSHIASRHRVSPTQMLATPAVID 607 (825)
T ss_pred -cccccccccccccccccccccCcCCccccccccCCCccccc--ccccchhhcccccccchhhhhccCccccccccceec
Confidence 23333343445566777777777777666554443211101 011122233466667777877766666666766666
Q ss_pred CCCcccccCCCCccccccCCCCCcccccCCCCChHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHhhcCCHHHHHHHHHh
Q 003445 615 SSGTVSTVSMPPFNAFKQRGYSSSAEKETASVSDEDATADVMEQHSQFVSSMQSRLAKLQAVYRYWERNDVKGAISAMQK 694 (819)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~h~~~~~~l~~R~~~l~~~~~~w~~~~~~~~i~~~~~ 694 (819)
.+.-.+..+-+|.++.++++.... |+...+.+|+|+.++||..||+|++.|++|+++||+||+||+++|||++|.+++|
T Consensus 608 ~~~~mt~~et~~t~~~~q~~n~~~-ee~~~s~~eedI~e~im~~Hde~lstlqSRl~kLqiVR~~Wer~DiK~sI~s~~k 686 (825)
T KOG0267|consen 608 QVGDMTADETRPTNMQPQRDNLVQ-EEPIISDREEDIVEDIMGTHNEFLSTLQSRLTKLQIVRHFWERSDIKGSIGSLRK 686 (825)
T ss_pred cccccccccccccccccccccccc-cccccCcchhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 666666667778888888877766 7666678999999999999999999999999999999999999999999999999
Q ss_pred cCCceEehhhHHHhhhccceeeehhhhhhhhhHHhhhcccccchHHHHHHHHHHHHHHHhHHHHhhhcCCCcccccccHH
Q 003445 695 MADHTVLADVMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIYSAISASTSVGVDIEAE 774 (819)
Q Consensus 695 ~~d~~v~~d~l~~~~~~~~~~~l~~c~~~lp~~~~ll~s~~e~~~~~~~~~l~~~~~~f~~~i~~~~~~~~~~gvd~~~e 774 (819)
|.|++|.||+|+||++|.++|+||+|+.|||+++.||.|+||+|+.|+|+||++||+.||++|+++++||+.|||||+||
T Consensus 687 l~D~sV~ADvL~Iltek~eiLtLDl~t~l~P~lt~LLgS~~e~~v~vsld~Llklv~~fgt~I~stlsAp~~VGVDi~ae 766 (825)
T KOG0267|consen 687 LADNSVQADVLNILTEKIEILTLDLCTQLLPVLTALLGSKTERPVNVSLDMLLKLVAVFGTVIYSTLSAPRSVGVDIHAE 766 (825)
T ss_pred hhhhhHHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHhcccchhhhhhHHHHHHHHHHHhhhhhhhhhhCCcccccccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcccchhhHHHHHHhhcc
Q 003445 775 QRIERCNRCFIELEKVKCCLPTLMRRGGSVAKSAQELNLALQ 816 (819)
Q Consensus 775 ~r~~~c~~c~~~l~~i~~~l~~~~~~~g~~~~~~~el~~~~~ 816 (819)
||.++|..||.+|.+|...|+.+++-+|..++.+++|+.+..
T Consensus 767 er~~~~~lc~~~l~kl~~~~~s~s~~s~s~~~~~~s~~~~~~ 808 (825)
T KOG0267|consen 767 ERKERYSLCFVELPKLFCGLASLSKNSSSFIKKRRSLNKKGS 808 (825)
T ss_pred HHHhhhhhhhhhcchhhccccccccccccchhhhhhhccccc
Confidence 999999999999999999999999999999999999998753
No 2
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=100.00 E-value=3.7e-48 Score=381.20 Aligned_cols=161 Identities=45% Similarity=0.747 Sum_probs=158.6
Q ss_pred HhhHHHHHHHHHHHHHhHHHHHHHhhcCCHHHHHHHHHhcCCceEehhhHHHhh--hccceeeehhhhhhhhhHHhhhcc
Q 003445 656 MEQHSQFVSSMQSRLAKLQAVYRYWERNDVKGAISAMQKMADHTVLADVMSIVV--EKIEIVTLDICSCLLPLLTGLLES 733 (819)
Q Consensus 656 ~~~h~~~~~~l~~R~~~l~~~~~~w~~~~~~~~i~~~~~~~d~~v~~d~l~~~~--~~~~~~~l~~c~~~lp~~~~ll~s 733 (819)
|++|++|+++|++|+++|++||++|+++|+|+||+|+++|+|+||+||+|++|+ ++++.||||+|+.+||+|+.||+|
T Consensus 1 ~~~H~~~~~vL~~R~~~L~~v~~~W~~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~S 80 (164)
T PF13925_consen 1 SKGHDTMISVLQSRLTNLQVVRTFWRRNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQS 80 (164)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhC
Confidence 689999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHhHHHHhhhcC-CCcccccccHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhHHHHHH
Q 003445 734 DMDRHLSISLDILLKLVRTFGSMIYSAISA-STSVGVDIEAEQRIERCNRCFIELEKVKCCLPTLMRRGGSVAKSAQELN 812 (819)
Q Consensus 734 ~~e~~~~~~~~~l~~~~~~f~~~i~~~~~~-~~~~gvd~~~e~r~~~c~~c~~~l~~i~~~l~~~~~~~g~~~~~~~el~ 812 (819)
|||+|+.+||++|++|+++|||+|++++++ ++.+||||++|||++||+.||.+|++|++.+..+++++|.+|+.||||+
T Consensus 81 k~E~~i~~aL~~L~~i~~~f~~~I~~~~~~~~~~~gVDl~~EeR~~kc~~c~~~L~~i~~~l~~l~~~~g~~g~~a~el~ 160 (164)
T PF13925_consen 81 KYESYISVALEMLRSILKKFGPVIRSNLSAPSPSIGVDLSAEERMEKCQECYQQLRKIVQILKSLARRSGEVGSLARELN 160 (164)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 999999999999999999999999999996 5889999999999999999999999999999999999999999999999
Q ss_pred hhcc
Q 003445 813 LALQ 816 (819)
Q Consensus 813 ~~~~ 816 (819)
+.||
T Consensus 161 ~~l~ 164 (164)
T PF13925_consen 161 LELQ 164 (164)
T ss_pred HhcC
Confidence 9997
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-40 Score=346.80 Aligned_cols=284 Identities=25% Similarity=0.496 Sum_probs=259.9
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (819)
..+.||.++|.|++|+| ++..|++|+.|.++++||+.+..+.++.++|...|.|++|+|||+.|++|+.||+|++||.+
T Consensus 109 sS~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred cccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 57889999999999999 77889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEE-EEEcCCCCCeEEEEEec-----CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 003445 90 EAKIV-RTLTGHRSNCISVDFHP-----FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE 163 (819)
Q Consensus 90 s~~~i-~~l~~h~~~I~sl~fsp-----~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~ 163 (819)
+|+++ +.+.+|...|++++|.| ..++||+++.||.|+|||+..+.++..+.+|..+|+|++|-.+| +|++|+.
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~ 266 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQ 266 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCC
Confidence 88754 67899999999999987 45789999999999999999999999999999999999998554 7999999
Q ss_pred CCeEEEEECCCCe-------------------------------------------------------------------
Q 003445 164 DNTVKLWDLTAGK------------------------------------------------------------------- 176 (819)
Q Consensus 164 Dg~I~IwDl~t~~------------------------------------------------------------------- 176 (819)
|++|++|+...|+
T Consensus 267 DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~ 346 (480)
T KOG0271|consen 267 DRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF 346 (480)
T ss_pred CceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc
Confidence 9999999875431
Q ss_pred ------------EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEE
Q 003445 177 ------------LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLC 244 (819)
Q Consensus 177 ------------~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Las 244 (819)
++..+.+|..-|+.+.|+||++++|+++.|..|++||.++|+.+..+++|-..|+.++|+.|.++|++
T Consensus 347 tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS 426 (480)
T KOG0271|consen 347 TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS 426 (480)
T ss_pred eEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEE
Confidence 12223456677899999999999999999999999999999999999999999999999999999999
Q ss_pred EECC-CEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEE
Q 003445 245 GLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (819)
Q Consensus 245 gs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ 295 (819)
|+.| .++||++.+.+...-+..+...+..+.+ +||+.+++|+.|..+++|.
T Consensus 427 ~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 427 GSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9988 5999999999998888888888888776 8999999999999999994
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-39 Score=343.51 Aligned_cols=281 Identities=27% Similarity=0.528 Sum_probs=269.0
Q ss_pred ccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCC
Q 003445 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSS--EVLVAAGAASGTIKLWDLEEA 91 (819)
Q Consensus 14 ~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspd--g~~Lasgs~DG~I~IWDl~s~ 91 (819)
+-+.+|..+.|++ ++..|+||+.+|.++||+..+...+..|.+|...|.++.|+|. +..+++|+.||++++|++.+.
T Consensus 173 gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred cCCCcceeeEeec-CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 5578999999999 7788999999999999999999999999999999999999996 568999999999999999999
Q ss_pred eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (819)
Q Consensus 92 ~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwD 171 (819)
.++..+.+|...|..++|+|+|++|++++.|.+-++||++++..+....+|...|.+++|++||..+++|+.|..-+|||
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD 331 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeC-CCCEEEEEECC-C
Q 003445 172 LTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP-DGRTLLCGLHE-S 249 (819)
Q Consensus 172 l~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fsp-dg~~Lasgs~d-~ 249 (819)
+++|+++..+.+|..+|.+++|+|+|..||+|+.|++++|||++....+..+.+|..-|+.+.|+| .|.+|++++.| .
T Consensus 332 lRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t 411 (459)
T KOG0272|consen 332 LRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT 411 (459)
T ss_pred cccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999998 68889988776 6
Q ss_pred EEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEE
Q 003445 250 LKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (819)
Q Consensus 250 I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ 295 (819)
++||.-++..+.+.+..+...+..+.+ ++++++++++.|.++++|.
T Consensus 412 ~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 412 VKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999999988877 7899999999999999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.1e-36 Score=305.31 Aligned_cols=284 Identities=25% Similarity=0.444 Sum_probs=266.0
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (819)
+.+++|.+.|.++.|++ +.+.+++++.||.+.|||.-+.+..+.+.-....|..++|+|.++++++|+.|+...||++.
T Consensus 49 r~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 68999999999999999 77889999999999999999999999999889999999999999999999999999999998
Q ss_pred CC------eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEE
Q 003445 90 EA------KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVVSGG 162 (819)
Q Consensus 90 s~------~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fsp-dg~~L~sgs 162 (819)
+. +..+.+.+|.+.+.++.|-+ ..+|++++.|.++.+||+++++.+..|.+|.+.|.++.++| +++.+++|+
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~ 206 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG 206 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence 54 45677899999999999987 56899999999999999999999999999999999999999 999999999
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC--CCCeeEEEEeCCCC
Q 003445 163 EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE--TSGVRCLTFNPDGR 240 (819)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~--~~~I~sl~fspdg~ 240 (819)
.|+..++||++.+.+.+.|.+|.+.|+++.|+|+|.-+++|+.|++.++||++..+.+..+... ..+|++++|+..|+
T Consensus 207 cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR 286 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGR 286 (343)
T ss_pred cccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccccc
Confidence 9999999999999999999999999999999999999999999999999999999888877543 56899999999999
Q ss_pred EEEEEECC-CEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEE
Q 003445 241 TLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (819)
Q Consensus 241 ~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ 295 (819)
+|++|.++ ++.|||.-..+....+..+...+..+.. +||-.+++|+.|.+++||.
T Consensus 287 lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 287 LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99998766 6999999888888899999999999876 8999999999999999994
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=9.2e-36 Score=300.46 Aligned_cols=289 Identities=26% Similarity=0.432 Sum_probs=258.1
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC-----CCceEEEecCCCCCeEEEEEcCCCCEEEEEECCC
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG-----KPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASG 81 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~-----~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG 81 (819)
.....+++|.+.|+.++..+.+..++++++.|..+.+|++. .|..++.+.||...|..+..++|+++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 34457899999999999999888999999999999999873 4677889999999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecC--CCCeEEEEEcCC--CCE
Q 003445 82 TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH--TRGVNAIRFTPD--GRW 157 (819)
Q Consensus 82 ~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h--~~~I~sl~fspd--g~~ 157 (819)
.+++||+.+++..+.|.+|...|.+++|+++.+.+++|+.|.+|++|++-. .+..++..+ ...|.|++|+|+ ..+
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 999999999999999999999999999999999999999999999999864 455555444 788999999997 789
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeC
Q 003445 158 VVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP 237 (819)
Q Consensus 158 L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fsp 237 (819)
|++++.|++|++||+++-+....+.+|.+.++.+.++|||.+.++|+.||.+.+||++.++.+..+. +...|.+++|+|
T Consensus 165 Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fsp 243 (315)
T KOG0279|consen 165 IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSP 243 (315)
T ss_pred EEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999987775 557899999999
Q ss_pred CCCEEEEEECCCEEEEEecCCceeeeeecccc-------ce--eEeE-ecCCCEEEEEEcCCeEEEEEec
Q 003445 238 DGRTLLCGLHESLKVFSWEPIRCHDAVDVGWS-------RL--SDLN-VHEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 238 dg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~s-------~i--~~l~-~~dg~lLa~~~~Dg~V~IW~ld 297 (819)
+.-.|+.+...+|+||++++..+...+..... .. ..+. +.+|+.|.+|+.|+.|++|.+.
T Consensus 244 nrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 244 NRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 99888888888999999999988766532221 11 2233 3799999999999999999875
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.3e-37 Score=325.35 Aligned_cols=249 Identities=28% Similarity=0.536 Sum_probs=239.6
Q ss_pred cceEEEEeccCCCEEEEEEeeC-CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRK-SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIK 84 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~-~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (819)
.-.++.|.+|.+.|.++.|+|. ++.-+|+|+.||++++|++.+...+..+.+|...|..++|+|+|++|++++.|.+-+
T Consensus 207 ~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWR 286 (459)
T KOG0272|consen 207 CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWR 286 (459)
T ss_pred cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchh
Confidence 3467899999999999999997 467899999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003445 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (819)
Q Consensus 85 IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~D 164 (819)
+||++++..+....||...|.+++|++||..+++|+.|..-+|||++++.++..+.+|..+|.++.|+|+|..|++|+.|
T Consensus 287 lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~D 366 (459)
T KOG0272|consen 287 LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSD 366 (459)
T ss_pred hcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEeC-CCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEE
Q 003445 165 NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL 243 (819)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~h~~~I~sl~fsp-dg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~La 243 (819)
++++|||++....+.++.+|..-|+.+.|+| .|.+|++++.|++++||..+++.++..+.+|.+.|.++.+++|+.+++
T Consensus 367 nt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~ 446 (459)
T KOG0272|consen 367 NTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIA 446 (459)
T ss_pred CcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEE
Confidence 9999999999999999999999999999999 689999999999999999999999999999999999999999999999
Q ss_pred EEECC-CEEEEE
Q 003445 244 CGLHE-SLKVFS 254 (819)
Q Consensus 244 sgs~d-~I~Vwd 254 (819)
+++.| ++++|.
T Consensus 447 t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 447 TSSFDRTIKLWR 458 (459)
T ss_pred EeccCceeeecc
Confidence 88776 799984
No 8
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6e-33 Score=290.10 Aligned_cols=285 Identities=32% Similarity=0.637 Sum_probs=261.4
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (819)
+.|.+|.+.|++++|+| ++.+|++++.||.|.+|++.+++....+..|...+..+.|++++++|++++.+|.|++||+.
T Consensus 3 ~~~~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 3 RTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred hHhcccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 46779999999999999 57789999999999999999888888899999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (819)
Q Consensus 90 s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~I 169 (819)
.++.+..+..|...+.++.|++++.++++++.+|.|++||+++++....+..|...+.+++|+|++.++++++.+|.|++
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 98888889999999999999999888888888999999999999999999999999999999999998888888999999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE-CC
Q 003445 170 WDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL-HE 248 (819)
Q Consensus 170 wDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs-~d 248 (819)
||+++++.+..+..|...+.++.|+|++..+++++.|+.|++||+..++.+..+..+...+.++.|++++.++++++ ++
T Consensus 162 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred EEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence 99999999999998888999999999999999999999999999999999888888888999999999999998888 66
Q ss_pred CEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEE
Q 003445 249 SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (819)
Q Consensus 249 ~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ 295 (819)
.+++|++...+....+..+...+..+.+ +++.++++++.|+.|++|+
T Consensus 242 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 8999999988877777766667777776 4679999999999999995
No 9
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-34 Score=302.10 Aligned_cols=247 Identities=28% Similarity=0.516 Sum_probs=222.6
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceE-EEecCCCCCeEEEEEcC-----CCCEEEEEEC
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI-LSLSGHTSGIDSVSFDS-----SEVLVAAGAA 79 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i-~~l~~h~~~V~~l~fsp-----dg~~Lasgs~ 79 (819)
...+.+.++|...|.|++|+| ++..||+|+.||.|++||..+++++ ..+.+|...|++++|.| ..++|++++.
T Consensus 147 eTp~~t~KgH~~WVlcvawsP-Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~sk 225 (480)
T KOG0271|consen 147 ETPLFTCKGHKNWVLCVAWSP-DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSK 225 (480)
T ss_pred CCcceeecCCccEEEEEEECC-CcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccC
Confidence 456678999999999999999 6778999999999999999887665 57899999999999965 6779999999
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEE----------------------
Q 003445 80 SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH---------------------- 137 (819)
Q Consensus 80 DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~---------------------- 137 (819)
||.|+|||+..+.++..+.+|..+|+|+.|--+ .++++|+.|++|++|+...|.+..
T Consensus 226 Dg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRt 304 (480)
T KOG0271|consen 226 DGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRT 304 (480)
T ss_pred CCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhc
Confidence 999999999999999999999999999999854 389999999999999875432211
Q ss_pred ---------------------------------------------------------EEecCCCCeEEEEEcCCCCEEEE
Q 003445 138 ---------------------------------------------------------TYKGHTRGVNAIRFTPDGRWVVS 160 (819)
Q Consensus 138 ---------------------------------------------------------~~~~h~~~I~sl~fspdg~~L~s 160 (819)
.+.+|..-|+.+.|+||++++++
T Consensus 305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IAS 384 (480)
T KOG0271|consen 305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIAS 384 (480)
T ss_pred cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEE
Confidence 12357777899999999999999
Q ss_pred EECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCC
Q 003445 161 GGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR 240 (819)
Q Consensus 161 gs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~ 240 (819)
++.|..|++||.++|+.+..|.+|-+.|+.++|+.|.++|++|+.|.++++||+++.++...+.+|...|.++.|+|||.
T Consensus 385 aSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~ 464 (480)
T KOG0271|consen 385 ASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQ 464 (480)
T ss_pred eecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCC-EEEEE
Q 003445 241 TLLCGLHES-LKVFS 254 (819)
Q Consensus 241 ~Lasgs~d~-I~Vwd 254 (819)
.+++|..|. +++|.
T Consensus 465 rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 465 RVASGGKDKVLRLWR 479 (480)
T ss_pred eeecCCCceEEEeec
Confidence 999988774 67763
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-34 Score=296.74 Aligned_cols=286 Identities=26% Similarity=0.502 Sum_probs=268.9
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (819)
.+.+.+|..+|+.+-|+| ...+++++++|++|++||..+++....+.||...|..|.|+..|+++++++.|-.+++||.
T Consensus 101 ~~~l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred hhhhhccccceeeeeecc-CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 456778999999999999 7778999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003445 89 EE-AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTV 167 (819)
Q Consensus 89 ~s-~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I 167 (819)
++ .++++.+.+|...|.+++|-|.|.++++++.|.+|+.|++.++-++.++.+|...|..++.+.||..+++++.|.+|
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl 259 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTL 259 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceE
Confidence 87 56778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEeCC---------------CCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeE
Q 003445 168 KLWDLTAGKLLHDFKCHEGQIQCIDFHPH---------------EFLLATGSADRTVKFWDLETFELIGSAGPETSGVRC 232 (819)
Q Consensus 168 ~IwDl~t~~~i~~~~~h~~~I~sl~fspd---------------g~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~s 232 (819)
++|-+.++.+...+..|.-+|-|++|.|. +.++.+++.|++|++||+.++.++.++.+|..+|..
T Consensus 260 ~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~ 339 (406)
T KOG0295|consen 260 RVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRG 339 (406)
T ss_pred EEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeee
Confidence 99999999999999999999999999772 359999999999999999999999999999999999
Q ss_pred EEEeCCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeEecCC-CEEEEEEcCCeEEEEE
Q 003445 233 LTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEG-KLLGCSYNQSCVGVWV 295 (819)
Q Consensus 233 l~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg-~lLa~~~~Dg~V~IW~ 295 (819)
++|+|.|+||+++.+| ++++||+...+|...+..+...+..+.+|.. .++++|+-|..+.+|.
T Consensus 340 ~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 340 VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999998877 6999999999999999988888888888754 6888999999999995
No 11
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=292.43 Aligned_cols=286 Identities=25% Similarity=0.482 Sum_probs=257.8
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (819)
+.+.+|.++|.|+++.| +...|++|+.|++|+|||+.+++...++.||-..|..+++++-..|+++++.|+.|+.||++
T Consensus 145 rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence 36789999999999999 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (819)
Q Consensus 90 s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~I 169 (819)
..+.++.+.||-+.|.|++.+|.-+.|++|+.|.++++||+++...+..+.+|..+|..+.+.|-...+++|+.|++|++
T Consensus 224 ~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrl 303 (460)
T KOG0285|consen 224 YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRL 303 (460)
T ss_pred hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999997788999999999999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-
Q 003445 170 WDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE- 248 (819)
Q Consensus 170 wDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d- 248 (819)
||++.|+....+..|...+.+++.+|....+|+++.|. |+-|++..|..+..+.+|..-|.+++...|| ++++|+++
T Consensus 304 WDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng 381 (460)
T KOG0285|consen 304 WDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNG 381 (460)
T ss_pred eeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCce
Confidence 99999999999999999999999999999999999775 9999999999999999999999999999887 55556555
Q ss_pred CEEEEEecCCceeeeeec---cc-----cceeEeEe-cCCCEEEEEEcCCeEEEEEecC
Q 003445 249 SLKVFSWEPIRCHDAVDV---GW-----SRLSDLNV-HEGKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 249 ~I~Vwd~~~~~~~~~~~~---~~-----s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~ 298 (819)
.+.+|||+++..++.... .. ..|....+ ..|..|++|..|.+|.+|.-|-
T Consensus 382 ~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 382 SIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred EEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 699999999877654411 11 11222222 4678889999999999996553
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.5e-33 Score=314.00 Aligned_cols=255 Identities=25% Similarity=0.518 Sum_probs=237.1
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC-------------------------------ceEEE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-------------------------------NAILS 54 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~-------------------------------~~i~~ 54 (819)
.+.+.++..-...++|..|++ ++.+||.|..|..|++|.+... .....
T Consensus 368 Sic~YT~~nt~~~v~ca~fSd-dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~ 446 (707)
T KOG0263|consen 368 SICMYTFHNTYQGVTCAEFSD-DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT 446 (707)
T ss_pred cEEEEEEEEcCCcceeEeecC-CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence 456777877778899999998 6669999999999999987521 12234
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe
Q 003445 55 LSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG 134 (819)
Q Consensus 55 l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~ 134 (819)
+.||.++|..+.|+|+.++|++++.|+++++|.+.+...+-.++||..+|+.+.|+|.|-|||+++.|++.++|......
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~ 526 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK 526 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEC
Q 003445 135 CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (819)
Q Consensus 135 ~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl 214 (819)
+++.+.+|.+.|.|+.|+|+..|+++|+.|.+|++||+.+|..++.|.+|.++|.+++|+|+|++|++|+.||.|.+||+
T Consensus 527 PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 527 PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCcee
Q 003445 215 ETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCH 261 (819)
Q Consensus 215 ~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~ 261 (819)
.++.++..+.+|.+.|.++.|+.||..|++|+.| ++++||+......
T Consensus 607 ~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 607 ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 9999999999999999999999999999998776 7999999765443
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.7e-32 Score=290.29 Aligned_cols=278 Identities=26% Similarity=0.455 Sum_probs=255.8
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVR 95 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~ 95 (819)
...|++++|+. +|.+||+|..||.++||+. ++..+.++..|.++|.++.|+..|.||++++.||++.+||..++...+
T Consensus 235 nkdVT~L~Wn~-~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 235 NKDVTSLDWNN-DGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred cCCcceEEecC-CCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence 35799999998 7889999999999999995 688888999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 003445 96 TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG 175 (819)
Q Consensus 96 ~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~ 175 (819)
.+.-|..+-..+.|.. ...|++.+.||.|+++-+....++.++.+|.+.|.++.|+|.|.+|+++++|++++||.....
T Consensus 313 ~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred eeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence 9998988878899984 457899999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCeEEEEEeCCC---------CEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003445 176 KLLHDFKCHEGQIQCIDFHPHE---------FLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (819)
Q Consensus 176 ~~i~~~~~h~~~I~sl~fspdg---------~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs 246 (819)
...+.+..|...|..+.|+|.| ..+++++.|++|++||+..+.+++.+..|..+|++++|+|+|+++++|+
T Consensus 392 ~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs 471 (524)
T KOG0273|consen 392 NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGS 471 (524)
T ss_pred cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecC
Confidence 9999999999999999999954 5899999999999999999999999999999999999999999999998
Q ss_pred CC-CEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEec
Q 003445 247 HE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 247 ~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld 297 (819)
-+ .+.+|+..+.+..+.+..... +..+.+ .+|..|+++..|+.+++-|+.
T Consensus 472 ~dg~V~iws~~~~~l~~s~~~~~~-Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLVKSYQGTGG-IFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCeeEeccccchheeEeecCCCe-EEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 77 599999999998887765554 555555 788999999999999998864
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-32 Score=273.17 Aligned_cols=249 Identities=26% Similarity=0.484 Sum_probs=219.9
Q ss_pred ccceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003445 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIK 84 (819)
Q Consensus 5 r~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (819)
....++.|+||+..|..++.++ ++++.++++.|+++++||+.+++....|.+|...|.+++|++|.+.+++|+.|.+|+
T Consensus 52 ~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTik 130 (315)
T KOG0279|consen 52 YGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIK 130 (315)
T ss_pred cCceeeeeeccceEecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceee
Confidence 3456789999999999999999 778999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeEEEEEcC-CCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 003445 85 LWDLEEAKIVRTLTG-HRSNCISVDFHPF--GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSG 161 (819)
Q Consensus 85 IWDl~s~~~i~~l~~-h~~~I~sl~fsp~--g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sg 161 (819)
+|++........... +.+.|.|+.|+|+ ..+|++++.|++|++||+++.+....+.+|++.++.+.++|||..+++|
T Consensus 131 lwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasG 210 (315)
T KOG0279|consen 131 LWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASG 210 (315)
T ss_pred eeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecC
Confidence 999875544333332 3789999999998 6799999999999999999999999999999999999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC---------CCCeeE
Q 003445 162 GEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE---------TSGVRC 232 (819)
Q Consensus 162 s~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~---------~~~I~s 232 (819)
+.||.+.+||++.++.+..+. |...|.+++|+|+..+|+.+.. ..|+|||++++..+..+... .....+
T Consensus 211 gkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cls 288 (315)
T KOG0279|consen 211 GKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLS 288 (315)
T ss_pred CCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEE
Confidence 999999999999999988776 7889999999999988888764 45999999998887765432 122356
Q ss_pred EEEeCCCCEEEEEECC-CEEEEEec
Q 003445 233 LTFNPDGRTLLCGLHE-SLKVFSWE 256 (819)
Q Consensus 233 l~fspdg~~Lasgs~d-~I~Vwd~~ 256 (819)
++|++||..|++|..+ .|++|.+.
T Consensus 289 laws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 289 LAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEcCCCcEEEeeecCCcEEEEEee
Confidence 8999999999999665 69999764
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.3e-31 Score=266.40 Aligned_cols=279 Identities=20% Similarity=0.379 Sum_probs=243.9
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEcCCCCCeE
Q 003445 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK--IVRTLTGHRSNCI 105 (819)
Q Consensus 28 ~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~--~i~~l~~h~~~I~ 105 (819)
..-+|++++.|.+|++|...+|.+..++....+.|+.+...|++++|++++ ...|++||+.++. ++.++.+|...|+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceE
Confidence 345899999999999999999999999997778999999999999999987 5689999998765 6899999999999
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec-C
Q 003445 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC-H 184 (819)
Q Consensus 106 sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~-h 184 (819)
++.|..+|+.+++|+.||+++|||++...+.+.|+ |..+|+++..+|+...|++|..+|.|++||+.+..+..++.. .
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~ 166 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPED 166 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCC
Confidence 99999999999999999999999999977776666 789999999999999999999999999999998877666543 3
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEECCC------CeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecC
Q 003445 185 EGQIQCIDFHPHEFLLATGSADRTVKFWDLET------FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP 257 (819)
Q Consensus 185 ~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~------~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~ 257 (819)
...|.++...|||.+|+.+...|..++|++-+ .+++..++.|.+.+..+.+|||+++|++++.+ .++||+.+.
T Consensus 167 ~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 167 DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 46799999999999999999999999999865 34667788999999999999999999988776 699999998
Q ss_pred C-ceeeeeeccccceeEe-EecCCCEEEEEEcCCeEEEEEecCCceeeeeecc
Q 003445 258 I-RCHDAVDVGWSRLSDL-NVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGS 308 (819)
Q Consensus 258 ~-~~~~~~~~~~s~i~~l-~~~dg~lLa~~~~Dg~V~IW~ld~~~~~p~~~~~ 308 (819)
. +....+..+..-+.+. +..||++|++++.|+.+++|++..++...-+.++
T Consensus 247 ~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 247 FFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred ceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence 7 5555566664444444 4489999999999999999999999876555444
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.4e-32 Score=308.17 Aligned_cols=210 Identities=31% Similarity=0.617 Sum_probs=203.6
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (819)
.....++.+|.++|..+.|+| +.++|+++++|+++++|.+.+..++..+.||..+|+++.|+|.|-|||+++.|++.++
T Consensus 441 ~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArL 519 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARL 519 (707)
T ss_pred CceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeee
Confidence 344567999999999999999 7789999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003445 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (819)
Q Consensus 86 WDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg 165 (819)
|.....++.+.+.+|.+.|.|+.|||+..|+++||.|.+|++||+.+|..++.|.+|.++|.+++|+|+|++|++|+.||
T Consensus 520 Ws~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~ 599 (707)
T KOG0263|consen 520 WSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDG 599 (707)
T ss_pred eecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 003445 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (819)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~ 216 (819)
.|++||+.+++.+..+.+|.+.|.++.|+.+|..||+|+.|++|++||+..
T Consensus 600 ~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 600 LIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 999999999999999999999999999999999999999999999999864
No 17
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.4e-31 Score=303.05 Aligned_cols=287 Identities=28% Similarity=0.584 Sum_probs=253.2
Q ss_pred EEecc-CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc--eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 11 EFVAH-SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN--AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 11 ~~~~H-~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~--~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
.+..| ...|.|+.|++ +++++++++.|+.+++|+....+ ....+.+|...|.+++|+|+++++++++.|++|++||
T Consensus 153 ~~~~~~~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eecccccCceEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 33344 78999999999 66679999999999999997777 7777789999999999999999999999999999999
Q ss_pred C-CCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003445 88 L-EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (819)
Q Consensus 88 l-~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~ 166 (819)
+ ..+..++++.+|...|++++|+|+++++++|+.|++|+|||+++++++..+.+|...|++++|+++|++|++++.|+.
T Consensus 232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~ 311 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT 311 (456)
T ss_pred ccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCcc
Confidence 9 566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCe--EEEEEecCCCC--eEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCC---eeEEEEeCCC
Q 003445 167 VKLWDLTAGK--LLHDFKCHEGQ--IQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSG---VRCLTFNPDG 239 (819)
Q Consensus 167 I~IwDl~t~~--~i~~~~~h~~~--I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~---I~sl~fspdg 239 (819)
|++||+.++. +...+..+... +++++|+|++.+|++++.|+.+++||+..+..+..+.+|... +.+..+++.|
T Consensus 312 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 312 IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGG 391 (456)
T ss_pred EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCC
Confidence 9999999998 56777766555 999999999999999999999999999999999998888764 3444567899
Q ss_pred CEEEEEECC-CEEEEEecCCceeeeeecc-ccceeEeEec-CCCEEEEEE--cCCeEEEEEecC
Q 003445 240 RTLLCGLHE-SLKVFSWEPIRCHDAVDVG-WSRLSDLNVH-EGKLLGCSY--NQSCVGVWVVDI 298 (819)
Q Consensus 240 ~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~-~s~i~~l~~~-dg~lLa~~~--~Dg~V~IW~ld~ 298 (819)
.++++|+.+ .|.+|+..+......+..+ ...+..+.++ ...++++++ .|+.+++|..+.
T Consensus 392 ~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~~ 455 (456)
T KOG0266|consen 392 KLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYDF 455 (456)
T ss_pred CeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCCC
Confidence 999999888 5999999987777777666 6666666664 456666666 689999997653
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.1e-31 Score=266.43 Aligned_cols=246 Identities=28% Similarity=0.518 Sum_probs=227.7
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC------ceEEEecCCCCCeEEEEEcCCCCEEEEEECC
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP------NAILSLSGHTSGIDSVSFDSSEVLVAAGAAS 80 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~------~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D 80 (819)
.|.+.+.....+|..++|+| +++++|+|+-|+...||++.+. .....+.+|++.+.|+.|-+|+ .|++++.|
T Consensus 88 nK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD 165 (343)
T KOG0286|consen 88 NKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGD 165 (343)
T ss_pred cceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCC
Confidence 45566677788999999999 8889999999999999999744 4456789999999999998855 66799999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 003445 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV 159 (819)
Q Consensus 81 G~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp-~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~ 159 (819)
.+..+||+++++.+..|.+|.+.|.++++.| +++.|++|+-|+..++||++.+.++++|.+|...|++++|.|+|.-|+
T Consensus 166 ~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afa 245 (343)
T KOG0286|consen 166 MTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFA 245 (343)
T ss_pred ceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeee
Confidence 9999999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred EEECCCeEEEEECCCCeEEEEEec--CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeC
Q 003445 160 SGGEDNTVKLWDLTAGKLLHDFKC--HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP 237 (819)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~~--h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fsp 237 (819)
+|++|+++++||++..+.+..+.. ...+|++++|+..|++|++|..|.++.+||.-.++.+..+.+|...|.|+..+|
T Consensus 246 tGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~ 325 (343)
T KOG0286|consen 246 TGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP 325 (343)
T ss_pred ecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC
Confidence 999999999999999988888763 345799999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECC-CEEEEE
Q 003445 238 DGRTLLCGLHE-SLKVFS 254 (819)
Q Consensus 238 dg~~Lasgs~d-~I~Vwd 254 (819)
||..+++|+.| .++||.
T Consensus 326 DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 326 DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCcEEEecchhHheeecC
Confidence 99999999988 599984
No 19
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.7e-32 Score=292.51 Aligned_cols=287 Identities=20% Similarity=0.388 Sum_probs=252.9
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC-CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~-~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
.+..|.+|...|+++.|.|..+.+|++|+.|+.|+||++-. +.++.++.+|..+|.+++|+.+|..+++++.|+.|++|
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence 45789999999999999998899999999999999999954 89999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003445 87 DLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (819)
Q Consensus 87 Dl~s~~~i~~l~~h~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg 165 (819)
|+++|+++..+. ....+.|+.|+|++ +.|++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|+++++.++|+
T Consensus 286 DtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk 364 (503)
T KOG0282|consen 286 DTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK 364 (503)
T ss_pred ccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCc
Confidence 999999999987 45678999999999 7899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEEec-CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeE---EEEeCCC--CCCeeEEEEeCCC
Q 003445 166 TVKLWDLTAGKLLHDFKC-HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL---IGSAGPE--TSGVRCLTFNPDG 239 (819)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~-h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~---l~~~~~~--~~~I~sl~fspdg 239 (819)
.++||+.+.+-.+..... +.-...++..+|++.+++.-+.|+.|.+|.+...-. ...+.+| .+.-..+.|||||
T Consensus 365 s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG 444 (503)
T KOG0282|consen 365 SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG 444 (503)
T ss_pred cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC
Confidence 999999998766554332 234567899999999999999999999999754222 2335555 3455778999999
Q ss_pred CEEEEEECC-CEEEEEecCCceeeeeeccccceeEeEecC--CCEEEEEEcCCeEEEEE
Q 003445 240 RTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHE--GKLLGCSYNQSCVGVWV 295 (819)
Q Consensus 240 ~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~d--g~lLa~~~~Dg~V~IW~ 295 (819)
.+|++|..+ .+.+|||++.+....+..+...+..+.+|. ...+|+|+.||.|++|+
T Consensus 445 ~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 445 RTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999766 599999999999888888877777777764 47889999999999996
No 20
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=9.9e-30 Score=255.93 Aligned_cols=287 Identities=21% Similarity=0.369 Sum_probs=238.1
Q ss_pred ccceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC---ceEEEe-cCCCCCeEEEEEcCCCCEEEEEECC
Q 003445 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP---NAILSL-SGHTSGIDSVSFDSSEVLVAAGAAS 80 (819)
Q Consensus 5 r~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~---~~i~~l-~~h~~~V~~l~fspdg~~Lasgs~D 80 (819)
+...++.+.+|.+.|..++|+|..+.+||+|+.|..|+||+...+ .+...+ .+|+..|+.++|+|.|++|++|+.|
T Consensus 3 ~l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 3 RLILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred cceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence 356778999999999999999943889999999999999998743 333333 3799999999999999999999999
Q ss_pred CeEEEEECCCC--eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC---eEEEEEecCCCCeEEEEEcCCC
Q 003445 81 GTIKLWDLEEA--KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK---GCIHTYKGHTRGVNAIRFTPDG 155 (819)
Q Consensus 81 G~I~IWDl~s~--~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~---~~i~~~~~h~~~I~sl~fspdg 155 (819)
.++.||.-..+ +++.++.||...|.+++|+++|++||+++.|..|.||.+... .++..++.|...|..+.|+|..
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 99999987644 688999999999999999999999999999999999998743 5788899999999999999999
Q ss_pred CEEEEEECCCeEEEEECC---CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeE
Q 003445 156 RWVVSGGEDNTVKLWDLT---AGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRC 232 (819)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~---t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~s 232 (819)
.+|++++.|.+|++|+-. ...+..++.+|...|.+++|++.|..|++++.|++++||-..+. ....|...++.
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~ 238 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYD 238 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEe
Confidence 999999999999999876 34688999999999999999999999999999999999986521 12345678999
Q ss_pred EEEeCCCCEEEEE-ECCCEEEEEecCCce---e----eeeeccccceeEeEecC--CCEEEEEEcCCeEEEEEec
Q 003445 233 LTFNPDGRTLLCG-LHESLKVFSWEPIRC---H----DAVDVGWSRLSDLNVHE--GKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 233 l~fspdg~~Lasg-s~d~I~Vwd~~~~~~---~----~~~~~~~s~i~~l~~~d--g~lLa~~~~Dg~V~IW~ld 297 (819)
+.|. +| .|+++ .++.|++|.-...-. . ..-..+...+..+.+.. ..+|++|++||.|++|.+.
T Consensus 239 v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 239 VPWD-NG-VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eeec-cc-ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9998 55 55655 455799987653211 1 11133444556666644 6899999999999999874
No 21
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.98 E-value=1.6e-30 Score=264.82 Aligned_cols=285 Identities=23% Similarity=0.393 Sum_probs=254.6
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEEC-CCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI-GKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl-~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
.+..+.+|.+.|+++.|+| ++.+|++|+.|..|.+|++ ...+....+++|.++|..+.|.+|++.|++++.|.+|+.|
T Consensus 39 p~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 4556789999999999999 8889999999999999995 6667788899999999999999999999999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003445 87 DLEEAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (819)
Q Consensus 87 Dl~s~~~i~~l~~h~~~I~sl~fsp~g~-~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg 165 (819)
|.++|+.++.+++|..-+.+++-...|. ++.+|+.||++++||+|++.+++++. ...+++++.|..++..+.+|+-|+
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccC
Confidence 9999999999999999999998555554 57788999999999999999998886 356799999999999999999999
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC----eEEEEeCCCC----CCeeEEEEeC
Q 003445 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF----ELIGSAGPET----SGVRCLTFNP 237 (819)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~----~~l~~~~~~~----~~I~sl~fsp 237 (819)
.|++||++.+...+.+.+|..+|+.+..+|+|.++.+-+.|.++++||++.+ .++..+.++. .....++|+|
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp 276 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP 276 (338)
T ss_pred ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence 9999999999999999999999999999999999999999999999999864 3466666553 3356789999
Q ss_pred CCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEE
Q 003445 238 DGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVW 294 (819)
Q Consensus 238 dg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW 294 (819)
++..+.+|+.+ .+.+||....++...++.+...+..+.+ +...+|..++.|.+|++=
T Consensus 277 ~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 277 NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 99999999877 5899999888999999999988888877 567888999999988763
No 22
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=4.2e-32 Score=285.51 Aligned_cols=278 Identities=25% Similarity=0.411 Sum_probs=244.8
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVR 95 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~ 95 (819)
...|..|.|.| .|+.|++|+..|.+.+|+.........+..|..+|+++.|++++.++++|+.+|.|++|+..-.. +.
T Consensus 96 kc~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VK 173 (464)
T ss_pred ccceeeEEEcC-CCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hH
Confidence 45899999999 67789999999999999976555555677899999999999999999999999999999976544 34
Q ss_pred EEcC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003445 96 TLTG-HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA 174 (819)
Q Consensus 96 ~l~~-h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t 174 (819)
.+++ |...|.+++|+|....|++++.||+|+|||....+.-..+.+|.-.|.+++|+|....|++|+.|..|++||.++
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence 4444 448999999999999999999999999999999888888899999999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEE-EEE-ECCCEEE
Q 003445 175 GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL-LCG-LHESLKV 252 (819)
Q Consensus 175 ~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~L-asg-s~d~I~V 252 (819)
+.++.++..|...|..+.|+|++++|++++.|..+++||+++.+.+..+++|...++++.|+|-..-| .+| .++++..
T Consensus 254 g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh 333 (464)
T KOG0284|consen 254 GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVH 333 (464)
T ss_pred cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999965444 444 4557999
Q ss_pred EEecCCceeeee-eccccceeEeEec-CCCEEEEEEcCCeEEEEE
Q 003445 253 FSWEPIRCHDAV-DVGWSRLSDLNVH-EGKLLGCSYNQSCVGVWV 295 (819)
Q Consensus 253 wd~~~~~~~~~~-~~~~s~i~~l~~~-dg~lLa~~~~Dg~V~IW~ 295 (819)
|.+...+.+..+ ..+...|.++.+| =|.+|++|+.|.++++|.
T Consensus 334 ~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 334 WVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred EeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 999865555444 4455667778774 589999999999999994
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.98 E-value=2.5e-30 Score=276.33 Aligned_cols=295 Identities=17% Similarity=0.373 Sum_probs=261.1
Q ss_pred ccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC--c--eEEEec------C----CCCCeEEEEEcCCCCEEEEEEC
Q 003445 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP--N--AILSLS------G----HTSGIDSVSFDSSEVLVAAGAA 79 (819)
Q Consensus 14 ~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~--~--~i~~l~------~----h~~~V~~l~fspdg~~Lasgs~ 79 (819)
.|..+|.+++|+|-...++++|+.|-..++|++... . ....|+ + ....|++++|+.+|.+|++|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 499999999999966668999999999999998641 1 111111 1 2357999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 003445 80 SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV 159 (819)
Q Consensus 80 DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~ 159 (819)
||.+++|+. .|..+.++..|+++|.++.|+..|+||++++.|+++.+||..++...+.+.-|..+-..+.|-.+ ..++
T Consensus 256 ~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ 333 (524)
T KOG0273|consen 256 DGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFA 333 (524)
T ss_pred CcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEe
Confidence 999999995 47778889999999999999999999999999999999999999999999989888778888754 4688
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCC
Q 003445 160 SGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG 239 (819)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg 239 (819)
+.+.||.|+++.+....++.++.+|.+.|.++.|+|.|.+|++++.|++++||+.........+..|...|+.+.|+|+|
T Consensus 334 ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g 413 (524)
T KOG0273|consen 334 TSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTG 413 (524)
T ss_pred ecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ---------CEEEEE-ECCCEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCCceeeeeecc
Q 003445 240 ---------RTLLCG-LHESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGS 308 (819)
Q Consensus 240 ---------~~Lasg-s~d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~~~p~~~~~ 308 (819)
..++++ .+..+++||.+.+.+...+..+..+++.+.+ ++|+++|+|+.||+|.||+..++++-.-+.+.
T Consensus 414 ~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~ 493 (524)
T KOG0273|consen 414 PVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT 493 (524)
T ss_pred CccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC
Confidence 345544 5557999999999999999999999999877 89999999999999999999999988766655
Q ss_pred cc
Q 003445 309 VT 310 (819)
Q Consensus 309 ~~ 310 (819)
..
T Consensus 494 ~~ 495 (524)
T KOG0273|consen 494 GG 495 (524)
T ss_pred Ce
Confidence 44
No 24
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=5.3e-29 Score=305.15 Aligned_cols=283 Identities=20% Similarity=0.311 Sum_probs=237.8
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC----c----eEEEecCCCCCeEEEEEcC-CCCEEEEEECC
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----N----AILSLSGHTSGIDSVSFDS-SEVLVAAGAAS 80 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~----~----~i~~l~~h~~~V~~l~fsp-dg~~Lasgs~D 80 (819)
..+..|.+.|++++|+| ++.+|++|+.|+.|+||++... . ....+. +...|.+++|++ ++.+|++++.|
T Consensus 477 ~~~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~D 554 (793)
T PLN00181 477 GDLLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFE 554 (793)
T ss_pred ccccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCC
Confidence 34566999999999999 6789999999999999997531 1 222333 356899999987 47899999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEc-CCCCEE
Q 003445 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFT-PDGRWV 158 (819)
Q Consensus 81 G~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp-~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fs-pdg~~L 158 (819)
|+|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||.|++||++++.++..+..+ ..+.++.|+ ++|.+|
T Consensus 555 g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~l 633 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSL 633 (793)
T ss_pred CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEE
Confidence 9999999999999999999999999999997 7889999999999999999999998888754 579999995 579999
Q ss_pred EEEECCCeEEEEECCCCe-EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC------CeEEEEeCCCCCCee
Q 003445 159 VSGGEDNTVKLWDLTAGK-LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET------FELIGSAGPETSGVR 231 (819)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~-~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~------~~~l~~~~~~~~~I~ 231 (819)
++|+.||.|++||+++++ .+..+.+|...|.++.|. ++.+|++++.|++|++||+.. +..+..+.+|...+.
T Consensus 634 atgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~ 712 (793)
T PLN00181 634 AFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN 712 (793)
T ss_pred EEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCee
Confidence 999999999999998765 566778899999999997 778999999999999999974 357788889999999
Q ss_pred EEEEeCCCCEEEEEECC-CEEEEEecCCceeeee-------------eccccceeEeEe-cCCCEEEEEEcCCeEEEEEe
Q 003445 232 CLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV-------------DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 296 (819)
Q Consensus 232 sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~-------------~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~l 296 (819)
+++|++++.+|++|+.+ .+++|+.........+ ..+...+..+.+ +++..|++|+.||.|+||++
T Consensus 713 ~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 713 FVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 99999999999999876 5999987643222111 112234666666 68899999999999999986
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5.4e-29 Score=277.97 Aligned_cols=288 Identities=25% Similarity=0.420 Sum_probs=259.3
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC-CeEEEEECCCCeE
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS-GTIKLWDLEEAKI 93 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D-G~I~IWDl~s~~~ 93 (819)
....|+|.+|++ +.++||+|-..|...+|.+.....++.+.-....|..+.|+..|..|+.|+.. |++-||++++...
T Consensus 264 ~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY 342 (893)
T KOG0291|consen 264 NSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY 342 (893)
T ss_pred cccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce
Confidence 347899999998 88999999999999999999999999999777899999999999999998765 8999999999999
Q ss_pred EEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 94 VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT 173 (819)
Q Consensus 94 i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~ 173 (819)
+...++|...+.+++++|||+++|+|+.||.|+|||.+.+-|+.+|..|+..|+.+.|+..|+.+++.+-||+|+.||+.
T Consensus 343 VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlk 422 (893)
T KOG0291|consen 343 VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLK 422 (893)
T ss_pred eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecC-CCCeEEEEEeCCCCEEEEEECCC-eEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CE
Q 003445 174 AGKLLHDFKCH-EGQIQCIDFHPHEFLLATGSADR-TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SL 250 (819)
Q Consensus 174 t~~~i~~~~~h-~~~I~sl~fspdg~~Lasgs~Dg-~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I 250 (819)
..+..++|... .-...|++..|.|.++++|+.|. .|.+|++++|+++..+.+|.++|.+++|+|+|..|++++.| ++
T Consensus 423 RYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTV 502 (893)
T KOG0291|consen 423 RYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTV 502 (893)
T ss_pred ccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceE
Confidence 99999998853 33567899999999999999887 69999999999999999999999999999999999999887 69
Q ss_pred EEEEecC-CceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEEecCCceee
Q 003445 251 KVFSWEP-IRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 251 ~Vwd~~~-~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~p 303 (819)
++|+.-. ......+......+..-+-++|+-||++.-||.|.+||+......-
T Consensus 503 RiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~ 556 (893)
T KOG0291|consen 503 RIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVG 556 (893)
T ss_pred EEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeec
Confidence 9999744 3344455554444444444899999999999999999988766553
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=2.2e-29 Score=250.41 Aligned_cols=261 Identities=24% Similarity=0.430 Sum_probs=228.5
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC--ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP--NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTI 83 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~--~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I 83 (819)
..+..+++...+.|+.+.+.| +++.||+++. ..|++||+.++ .++.++.+|+..|..+.|..+|+.+++|+.||++
T Consensus 30 G~C~rTiqh~dsqVNrLeiTp-dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~ 107 (311)
T KOG0315|consen 30 GICSRTIQHPDSQVNRLEITP-DKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTV 107 (311)
T ss_pred CeEEEEEecCccceeeEEEcC-CcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceE
Confidence 345567777778999999999 6667887765 67999999655 4689999999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEE
Q 003445 84 KLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK-GHTRGVNAIRFTPDGRWVVSGG 162 (819)
Q Consensus 84 ~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~-~h~~~I~sl~fspdg~~L~sgs 162 (819)
+|||++...+.+.++ |..+|.++..+|+...|++|..+|.|++||+....+...+- .....|.++...|||.+++.+.
T Consensus 108 kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n 186 (311)
T KOG0315|consen 108 KIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN 186 (311)
T ss_pred EEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec
Confidence 999999976666665 77999999999999999999999999999999887766553 3446799999999999999999
Q ss_pred CCCeEEEEECCCC------eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC-eEEEEeCCCCCCeeEEEE
Q 003445 163 EDNTVKLWDLTAG------KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF-ELIGSAGPETSGVRCLTF 235 (819)
Q Consensus 163 ~Dg~I~IwDl~t~------~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~-~~l~~~~~~~~~I~sl~f 235 (819)
..|.+++|++-+. +++..++.|.+-+..+.++|++++||+++.|.+++||+.+++ +....+.+|..++..++|
T Consensus 187 nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~F 266 (311)
T KOG0315|consen 187 NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAF 266 (311)
T ss_pred CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeee
Confidence 9999999998764 456678889999999999999999999999999999999988 666678899999999999
Q ss_pred eCCCCEEEEEECC-CEEEEEecCCceeeeeecccc
Q 003445 236 NPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWS 269 (819)
Q Consensus 236 spdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s 269 (819)
|.||.||++|+.| ..++|++..++....+..+..
T Consensus 267 S~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K 301 (311)
T KOG0315|consen 267 SADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHK 301 (311)
T ss_pred ccCccEEEecCCCCceeecccccCceeeecCCccc
Confidence 9999999999877 599999999887777665544
No 27
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=2.2e-29 Score=262.26 Aligned_cols=305 Identities=17% Similarity=0.306 Sum_probs=268.7
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
--+..|..|+..|.+++.+| +.++++||+.|..-+||++.++.....+.+|+..|+++.|+.+|.+|++|+.+|.|.||
T Consensus 55 dS~~tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred cceeehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 34678999999999999999 88999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003445 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (819)
Q Consensus 87 Dl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~ 166 (819)
...++.....+......|.-+.|||.+..|+.|+.||.+.+|.+.++...+.+.+|+.++++=.|.|+|+.++++..||+
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred EcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 99999998888777788999999999999999999999999999998889999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEecC-CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC--------CCCCeeEE---E
Q 003445 167 VKLWDLTAGKLLHDFKCH-EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP--------ETSGVRCL---T 234 (819)
Q Consensus 167 I~IwDl~t~~~i~~~~~h-~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~--------~~~~I~sl---~ 234 (819)
|++||+.++.+++.+... .....++.++..+..++.|+.++.+++-+..+|+.+....+ +...+.++ .
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP 293 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence 999999999999988743 34678899999999999999999999999999998887663 33344444 4
Q ss_pred EeCCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEEecCCceeeeeecccceec
Q 003445 235 FNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVN 313 (819)
Q Consensus 235 fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~p~~~~~~~~~n 313 (819)
|+..=.+.|+|+-+ .|.|||+...+...++..... +..+.+.+..+|+++..+|.|++||..++++.--+.++-..+-
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~-V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il 372 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG-VTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGIL 372 (399)
T ss_pred cccccchhhcccccceEEEEecccchhheeccCCCc-eEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchhee
Confidence 55555667788665 699999988776666544443 6667776689999999999999999999999998888866543
No 28
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.7e-30 Score=281.98 Aligned_cols=293 Identities=20% Similarity=0.402 Sum_probs=269.7
Q ss_pred EEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003445 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE 90 (819)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s 90 (819)
.|..|+..|.|+.|+| ....++++-.+|.|.|||.++...+..+.-..-+|++..|-+..+.+++|+.|..|++|+..+
T Consensus 8 k~~~rSdRVKsVd~HP-tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHP-TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred HhhccCCceeeeecCC-CCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 4566999999999999 778899999999999999999999999998889999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-CeEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEE
Q 003445 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK-KGCIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDNTVK 168 (819)
Q Consensus 91 ~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t-~~~i~~~~~h~~~I~sl~fsp-dg~~L~sgs~Dg~I~ 168 (819)
++.+..|..|.+.|.+++.||...++++++.|-.|++||.+. ..+.+++.+|...|++++|+| |.+.+++++-|++|+
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 999999999999999999999999999999999999999985 468899999999999999999 778999999999999
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEeCCC--CEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003445 169 LWDLTAGKLLHDFKCHEGQIQCIDFHPHE--FLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (819)
Q Consensus 169 IwDl~t~~~i~~~~~h~~~I~sl~fspdg--~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs 246 (819)
+|.+-...+..++.+|...|+|++|-+.| .+|++|+.|.+|++||.++..++.++.+|...|..+.|+|.-.++++|+
T Consensus 167 VWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs 246 (794)
T KOG0276|consen 167 VWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS 246 (794)
T ss_pred EEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec
Confidence 99999999999999999999999998854 6999999999999999999999999999999999999999999999999
Q ss_pred CC-CEEEEEecCCceeeeeeccccceeEeEec-CCCEEEEEEcCCeEEEEEecCCceeeeeec
Q 003445 247 HE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVH-EGKLLGCSYNQSCVGVWVVDISRIEPYTIG 307 (819)
Q Consensus 247 ~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~-dg~lLa~~~~Dg~V~IW~ld~~~~~p~~~~ 307 (819)
.| +++||+-.+.+....+..+...+.++..+ .+..++.|+++|.|.| ..++-.|.+..
T Consensus 247 EDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v---~lgreeP~vsM 306 (794)
T KOG0276|consen 247 EDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV---KLGREEPAVSM 306 (794)
T ss_pred CCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE---EccCCCCceee
Confidence 87 59999999999999999999998888864 4567889999887743 55666665543
No 29
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4e-29 Score=279.03 Aligned_cols=292 Identities=22% Similarity=0.430 Sum_probs=248.6
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEEEeC-CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGE-DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Latgs~-Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
++.+.--..+|..++|+. .|..||.|+. -|.+-||++.....+....+|...+++++++|||+++++|+.||+|+|||
T Consensus 300 ih~LSis~~~I~t~~~N~-tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn 378 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNS-TGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN 378 (893)
T ss_pred EEEeecccceeeEEEecc-cCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEe
Confidence 344444457899999987 5666777654 58999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecC-CCCeEEEEEcCCCCEEEEEECCCe
Q 003445 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH-TRGVNAIRFTPDGRWVVSGGEDNT 166 (819)
Q Consensus 88 l~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h-~~~I~sl~fspdg~~L~sgs~Dg~ 166 (819)
..++-++.+|..|...|+.+.|+..|+.+++.+.||+|+.||+...+..+++... .....|++..|.|..+++|+.|..
T Consensus 379 ~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F 458 (893)
T KOG0291|consen 379 TQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSF 458 (893)
T ss_pred ccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceE
Confidence 9999999999999999999999999999999999999999999999999988753 345789999999999999998875
Q ss_pred -EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe-EEEEeCCCCCCeeEEEEeCCCCEEEE
Q 003445 167 -VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE-LIGSAGPETSGVRCLTFNPDGRTLLC 244 (819)
Q Consensus 167 -I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~-~l~~~~~~~~~I~sl~fspdg~~Las 244 (819)
|.+|++++|+.+..+.+|.++|.+++|+|++..|++|+.|.+|++||+-... .+..+ .....+..++|.|+|+.|++
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaV 537 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAV 537 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEE
Confidence 9999999999999999999999999999999999999999999999985542 23333 34567899999999999998
Q ss_pred EECC-CEEEEEecCCceeeee--------------------eccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCCcee
Q 003445 245 GLHE-SLKVFSWEPIRCHDAV--------------------DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIE 302 (819)
Q Consensus 245 gs~d-~I~Vwd~~~~~~~~~~--------------------~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~~~ 302 (819)
++-+ .|.+||.+.......+ ......+..+.+ .||..+.+|+..+.|.||++..+-+.
T Consensus 538 aTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 538 ATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLL 617 (893)
T ss_pred EEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhee
Confidence 8766 6999998754433211 111233445544 79999999999999999999887654
No 30
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=6.4e-29 Score=268.41 Aligned_cols=290 Identities=21% Similarity=0.388 Sum_probs=247.6
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
.+-++.||...|++++|-|...-.++||++|+.|.+|.=...+.-.++..|...|+|+.|+|||.++++.+.||+|.+||
T Consensus 139 SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyD 218 (603)
T KOG0318|consen 139 SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYD 218 (603)
T ss_pred ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEc
Confidence 34688999999999999997777899999999999999666677778889999999999999999999999999999999
Q ss_pred CCCCeEEEEEc---CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE--------------------------
Q 003445 88 LEEAKIVRTLT---GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT-------------------------- 138 (819)
Q Consensus 88 l~s~~~i~~l~---~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~-------------------------- 138 (819)
=.+++.+..+. +|.+.|.++.|+||+..|++++.|.+++|||+.+.+++.+
T Consensus 219 Gktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl 298 (603)
T KOG0318|consen 219 GKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSL 298 (603)
T ss_pred CCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEc
Confidence 99999999998 8999999999999999999999999999999976554333
Q ss_pred -----------------EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-------------------------
Q 003445 139 -----------------YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK------------------------- 176 (819)
Q Consensus 139 -----------------~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~------------------------- 176 (819)
+.+|...|+++..++++++|++|+.||.|.-||..+|.
T Consensus 299 ~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~ 378 (603)
T KOG0318|consen 299 SGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELF 378 (603)
T ss_pred CcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEE
Confidence 34789999999999999999999999999999974320
Q ss_pred --------------------------------------------------------------------------------
Q 003445 177 -------------------------------------------------------------------------------- 176 (819)
Q Consensus 177 -------------------------------------------------------------------------------- 176 (819)
T Consensus 379 t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~v 458 (603)
T KOG0318|consen 379 TIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEV 458 (603)
T ss_pred EEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEE
Confidence
Q ss_pred -------EEE-------------EEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEE-EeCCCCCCeeEEEE
Q 003445 177 -------LLH-------------DFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIG-SAGPETSGVRCLTF 235 (819)
Q Consensus 177 -------~i~-------------~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~-~~~~~~~~I~sl~f 235 (819)
.++ ....|.++|++++|+||+.+||+|...+.+.+||+.+.+... .+.-|...|.+++|
T Consensus 459 aVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aW 538 (603)
T KOG0318|consen 459 AVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAW 538 (603)
T ss_pred EEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEe
Confidence 000 012356778899999999999999999999999998877532 34558899999999
Q ss_pred eCCCCEEEEEECC-CEEEEEecCC-ceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEEec
Q 003445 236 NPDGRTLLCGLHE-SLKVFSWEPI-RCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 236 spdg~~Lasgs~d-~I~Vwd~~~~-~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld 297 (819)
+|+...+|+|+-| .|.||+++.- +-..+...+-..+..+.+.+...+++++.|.+|++|.+.
T Consensus 539 sP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 539 SPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred CCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 9999999999988 5999998753 334444555556888999999999999999999999874
No 31
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=2.4e-31 Score=279.85 Aligned_cols=242 Identities=28% Similarity=0.589 Sum_probs=221.7
Q ss_pred EeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003445 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGH-TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE 90 (819)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h-~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s 90 (819)
+++|.++|+++.|++ ++.++++|+.+|.|++|+.. .+.++.+.+| ...|++++|+|+...|++++.||+|+|||...
T Consensus 134 lQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred hhhhcccceeEEEcc-CCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence 468999999999999 88899999999999999975 4444445544 58999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLW 170 (819)
Q Consensus 91 ~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~Iw 170 (819)
.+.-..+.+|.-.|.+++|||...++++|+.|..|++||.+++.|+.++.+|+..|..+.|++++++|++++.|..++++
T Consensus 212 ~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~ 291 (464)
T KOG0284|consen 212 PKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVF 291 (464)
T ss_pred CchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEE
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEeC-CCCEEEEEECCCeEEEEECCCCeEEEEe-CCCCCCeeEEEEeCCCCEEEEEECC
Q 003445 171 DLTAGKLLHDFKCHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLETFELIGSA-GPETSGVRCLTFNPDGRTLLCGLHE 248 (819)
Q Consensus 171 Dl~t~~~i~~~~~h~~~I~sl~fsp-dg~~Lasgs~Dg~I~iwDl~~~~~l~~~-~~~~~~I~sl~fspdg~~Lasgs~d 248 (819)
|+++.+.+..+++|...++++.|+| +..+|.+|+.||.|.+|.+...+++..+ .+|...|++++|+|=|.+|++|+.|
T Consensus 292 DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd 371 (464)
T KOG0284|consen 292 DIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSND 371 (464)
T ss_pred ehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCC
Confidence 9999899999999999999999999 5789999999999999999865655554 5688999999999999999999877
Q ss_pred -CEEEEEe
Q 003445 249 -SLKVFSW 255 (819)
Q Consensus 249 -~I~Vwd~ 255 (819)
.+++|.-
T Consensus 372 ~t~rfw~r 379 (464)
T KOG0284|consen 372 RTVRFWTR 379 (464)
T ss_pred cceeeecc
Confidence 5888864
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=4.9e-31 Score=271.77 Aligned_cols=274 Identities=22% Similarity=0.482 Sum_probs=235.1
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIV 94 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i 94 (819)
....|+|+.+. ...+++|..|++|+|||..+..+...+.||++.|.|+.|. .+.|++|+.|.+|++||+++++++
T Consensus 196 ~skgVYClQYD---D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 196 NSKGVYCLQYD---DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred cCCceEEEEec---chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh
Confidence 35689999994 3469999999999999999999999999999999999984 569999999999999999999999
Q ss_pred EEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe---EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 95 RTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG---CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (819)
Q Consensus 95 ~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~---~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwD 171 (819)
.++-+|...|..+.|+ ..++++++.|.+|.+||+.... +.+.+.+|...|+.+.|+ .+++++++.|.+|++|+
T Consensus 271 ~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWS 346 (499)
T ss_pred hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEe
Confidence 9999999999999998 6799999999999999998654 234567899999999997 56999999999999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CE
Q 003445 172 LTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SL 250 (819)
Q Consensus 172 l~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I 250 (819)
+.+++.+.++.+|...|-|+.+ .|+++++|+.|.+|++||+..|.++..+++|..-|+|+.|. .+.+++|..| .|
T Consensus 347 ~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGki 422 (499)
T KOG0281|consen 347 TSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKI 422 (499)
T ss_pred ccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceE
Confidence 9999999999999999999887 58899999999999999999999999999999999999995 4567766555 69
Q ss_pred EEEEecCCcee---------eeeeccccceeEeEecCCCEEEEEEcCCeEEEEEecCCcee
Q 003445 251 KVFSWEPIRCH---------DAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIE 302 (819)
Q Consensus 251 ~Vwd~~~~~~~---------~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~ 302 (819)
+|||+.+.... .....+...+..+.+ |...+++++.|.+|-|||+..+...
T Consensus 423 kvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF-D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 423 KVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF-DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred EEEecccccCCcccccchHHHhhhhccceeEEEee-cceEEEeccCCCeEEEEEcCCCCcc
Confidence 99999875433 222333344444443 5566677788899999998876543
No 33
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.7e-29 Score=285.11 Aligned_cols=295 Identities=23% Similarity=0.374 Sum_probs=264.8
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (819)
..|...+..|..++|+| ....++++-..|.|++||..-+.++..|..|.++|..++|+|++.++++|+.|-.|++|+..
T Consensus 3 tkfEskSsRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred chhhcccccccceecCC-CCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 35666788999999999 77889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (819)
Q Consensus 90 s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~I 169 (819)
+.+++.++.||.+.|..+.||+.-..++++|.|-+|+||+.++.+++..+.+|...|.|.+|+|....+++++-|.+|++
T Consensus 82 ~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCC-----------------------------eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe--
Q 003445 170 WDLTAG-----------------------------KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE-- 218 (819)
Q Consensus 170 wDl~t~-----------------------------~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~-- 218 (819)
||+..- -..+.+.+|...|+-++|||.-.++++|+.|+.|++|.+..-+
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW 241 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 241 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce
Confidence 998521 0123456899999999999999999999999999999986544
Q ss_pred EEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEEec
Q 003445 219 LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 219 ~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld 297 (819)
.+.+..+|.+.|.++-|+|...++++.+.| .|+|||++..++.+++.........+..|..--|.++++|+.+.||.++
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence 345678999999999999998898888777 6999999999999999888888888888877666677788888899888
Q ss_pred CCceeeee
Q 003445 298 ISRIEPYT 305 (819)
Q Consensus 298 ~~~~~p~~ 305 (819)
-.+....+
T Consensus 322 RErpa~~v 329 (1202)
T KOG0292|consen 322 RERPAYAV 329 (1202)
T ss_pred ccCceEEE
Confidence 65554433
No 34
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=6.3e-30 Score=264.94 Aligned_cols=249 Identities=24% Similarity=0.421 Sum_probs=238.4
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC
Q 003445 52 ILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR 131 (819)
Q Consensus 52 i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~ 131 (819)
...+.+|.+.|.|+++.|...+|++|+.|++|+|||+.+|+...++.||...|..+++++...|+++++.|+.|+.||++
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEE
Q 003445 132 KKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKF 211 (819)
Q Consensus 132 t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~i 211 (819)
..+.++.|.+|-+.|.|++.+|.-..|++|+.|..+++||+++...+..+.+|..+|..+.+.|-...+++|+.|++|++
T Consensus 224 ~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrl 303 (460)
T KOG0285|consen 224 YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRL 303 (460)
T ss_pred hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred EECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeE
Q 003445 212 WDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCV 291 (819)
Q Consensus 212 wDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V 291 (819)
||+..|+....+..|...+++++.+|....+++++.|.|+-|++..+.....+..+...+..+......++++|++.|.+
T Consensus 304 WDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~ 383 (460)
T KOG0285|consen 304 WDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSI 383 (460)
T ss_pred eeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEE
Confidence 99999999999999999999999999999999999999999999998888888888889999999999999999999999
Q ss_pred EEEEecCCc
Q 003445 292 GVWVVDISR 300 (819)
Q Consensus 292 ~IW~ld~~~ 300 (819)
..||-..+-
T Consensus 384 ~fwdwksg~ 392 (460)
T KOG0285|consen 384 MFWDWKSGH 392 (460)
T ss_pred EEEecCcCc
Confidence 999987654
No 35
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.1e-29 Score=282.00 Aligned_cols=284 Identities=25% Similarity=0.477 Sum_probs=251.8
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
.+..|..|.++|+.++|+| .+.++++||+|.+|++|+..+.+++.++.||-+.|..+.|++.-..|++++.|.+|+||+
T Consensus 43 li~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWN 121 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWN 121 (1202)
T ss_pred HHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEe
Confidence 4567899999999999999 788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-----------------------------eEEEE
Q 003445 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-----------------------------GCIHT 138 (819)
Q Consensus 88 l~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~-----------------------------~~i~~ 138 (819)
+.+++++..+.||...|+|..|+|....++++|.|-+|++||+..- -..+.
T Consensus 122 wqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 122 WQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV 201 (1202)
T ss_pred ccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence 9999999999999999999999999999999999999999998521 02345
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE--EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 003445 139 YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL--LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (819)
Q Consensus 139 ~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~--i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~ 216 (819)
+.+|...|+.++|+|.-..|++|++|..|++|.+...+. +.+..+|...|.++-|||...++++.++|++|++||+..
T Consensus 202 LEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 202 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred ecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence 679999999999999999999999999999999876543 445678999999999999999999999999999999999
Q ss_pred CeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEEe
Q 003445 217 FELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 296 (819)
Q Consensus 217 ~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~l 296 (819)
.+.+++++......+.++-+|..+++++|.+.++.||.++..+.. .+.+++.++.+- |..|+-+|+
T Consensus 282 Rt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa------------~~v~~n~LfYvk--d~~i~~~d~ 347 (1202)
T KOG0292|consen 282 RTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPA------------YAVNGNGLFYVK--DRFIRSYDL 347 (1202)
T ss_pred ccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCce------------EEEcCCEEEEEc--cceEEeeec
Confidence 999999988889999999999999999999999999999865542 223455555554 778888888
Q ss_pred cCCceeeeee
Q 003445 297 DISRIEPYTI 306 (819)
Q Consensus 297 d~~~~~p~~~ 306 (819)
.+.+-.++..
T Consensus 348 ~t~~d~~v~~ 357 (1202)
T KOG0292|consen 348 RTQKDTAVAS 357 (1202)
T ss_pred cccccceeEe
Confidence 8866555443
No 36
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.5e-29 Score=244.47 Aligned_cols=284 Identities=21% Similarity=0.302 Sum_probs=246.7
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (819)
..++..+..|.++|+.+.|+- +++|.++++.|.+|++|+...+.+++++.+|...|..++.+.|...|++|+.|..+.+
T Consensus 7 tkr~~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQV 85 (307)
T ss_pred chhceeecccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEE
Confidence 346778889999999999998 7889999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC--CeEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 003445 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK--KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE 163 (819)
Q Consensus 86 WDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t--~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~ 163 (819)
||+.+|+.++.+.+|...|..+.|+.+...+++|+.|..+++||.++ .++++.+......|.++... +..|++|+.
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~ 163 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSV 163 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeecc
Confidence 99999999999999999999999999999999999999999999985 46888888888899999987 678999999
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCe--eEEEEeCCCCE
Q 003445 164 DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGV--RCLTFNPDGRT 241 (819)
Q Consensus 164 Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I--~sl~fspdg~~ 241 (819)
||+++.||++.|+....+- ..+|++++|+++++.+++++.|+++++.|-.+|+++..+++|...- ...+++.....
T Consensus 164 DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdth 241 (307)
T KOG0316|consen 164 DGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTH 241 (307)
T ss_pred CCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccccee
Confidence 9999999999998877665 4689999999999999999999999999999999999999987654 34567777788
Q ss_pred EEEEECCC-EEEEEecCCceeeeeeccccc-eeEeEecCCCEEEEEEcCCeEEEE
Q 003445 242 LLCGLHES-LKVFSWEPIRCHDAVDVGWSR-LSDLNVHEGKLLGCSYNQSCVGVW 294 (819)
Q Consensus 242 Lasgs~d~-I~Vwd~~~~~~~~~~~~~~s~-i~~l~~~dg~lLa~~~~Dg~V~IW 294 (819)
+++|+.|+ +.+||+........+..+... +.++.+|....-.....++.+..|
T Consensus 242 V~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~ 296 (307)
T KOG0316|consen 242 VFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFW 296 (307)
T ss_pred EEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceece
Confidence 99998886 889999887777777766665 677777644222222233445555
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=6.1e-28 Score=252.17 Aligned_cols=246 Identities=35% Similarity=0.683 Sum_probs=227.3
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
....+..|...+.++.|++ ++.++++++.||.|++|++.+++.+..+..|...|.++.|++++.++++++.+|.|.+||
T Consensus 43 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~ 121 (289)
T cd00200 43 LLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD 121 (289)
T ss_pred cEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 3457788999999999999 557899999999999999998888888999999999999999999999888899999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003445 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTV 167 (819)
Q Consensus 88 l~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I 167 (819)
+.+++....+..|...+.+++|+|++.++++++.||.|++||+++++.+..+..|...+.++.|+|+++.+++++.+|.|
T Consensus 122 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 201 (289)
T cd00200 122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201 (289)
T ss_pred CCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcE
Confidence 99999999999999999999999999999988889999999999999999999999899999999999999999999999
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC
Q 003445 168 KLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (819)
Q Consensus 168 ~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (819)
++||++.++.+..+..|...+.++.|+|++.++++++.||.|++||+.+++.+..+..|...|.+++|++++.+|++++.
T Consensus 202 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 281 (289)
T cd00200 202 KLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA 281 (289)
T ss_pred EEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecC
Confidence 99999999999888788889999999999999999988999999999999999988888899999999999999998877
Q ss_pred C-CEEEEE
Q 003445 248 E-SLKVFS 254 (819)
Q Consensus 248 d-~I~Vwd 254 (819)
+ .+++|+
T Consensus 282 d~~i~iw~ 289 (289)
T cd00200 282 DGTIRIWD 289 (289)
T ss_pred CCeEEecC
Confidence 6 588885
No 38
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.3e-28 Score=282.57 Aligned_cols=247 Identities=25% Similarity=0.553 Sum_probs=225.0
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEEC-CCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI-GKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl-~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
.++.+.+|...|++++|+| ++.++++|+.|++|+|||+ ..+..++++.+|...|++++|+|+++++++|+.|++|++|
T Consensus 195 ~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriW 273 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIW 273 (456)
T ss_pred hhccccccccceeeeEECC-CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEE
Confidence 4556689999999999999 6779999999999999999 5668999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe--EEEEEecCCCC--eEEEEEcCCCCEEEEEE
Q 003445 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG--CIHTYKGHTRG--VNAIRFTPDGRWVVSGG 162 (819)
Q Consensus 87 Dl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~--~i~~~~~h~~~--I~sl~fspdg~~L~sgs 162 (819)
|+++++++..+.+|.+.|.+++|++++.+|++++.|+.|++||+.++. ++..+..+... +++++|+|++.++++++
T Consensus 274 d~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 274 DVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred eccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence 999999999999999999999999999999999999999999999998 66777766655 99999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCC---eEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC-CCCeeEEEEeCC
Q 003445 163 EDNTVKLWDLTAGKLLHDFKCHEGQ---IQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE-TSGVRCLTFNPD 238 (819)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~~h~~~---I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~-~~~I~sl~fspd 238 (819)
.|+.+++||+..+.....+.+|... +.+..+++.+.++++|+.|+.|++||+.++..+..+.+| ...+..+.|++.
T Consensus 354 ~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~ 433 (456)
T KOG0266|consen 354 LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPT 433 (456)
T ss_pred CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCC
Confidence 9999999999999999999988775 334455778999999999999999999999999999999 889999999999
Q ss_pred CCEEEEEE---CCCEEEEEe
Q 003445 239 GRTLLCGL---HESLKVFSW 255 (819)
Q Consensus 239 g~~Lasgs---~d~I~Vwd~ 255 (819)
..++++++ +..+++|..
T Consensus 434 ~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 434 ENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred cCeeeecCcCCCceEEEecC
Confidence 99999886 234777754
No 39
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.4e-29 Score=260.68 Aligned_cols=245 Identities=26% Similarity=0.465 Sum_probs=232.4
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC-CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~-~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
...+++|.+.|..++|+. .+++|++++.|=.+++||.++ .+++..+.+|...|.+++|-|.|.+|++++.|.+|+.|+
T Consensus 143 e~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We 221 (406)
T KOG0295|consen 143 ERSLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWE 221 (406)
T ss_pred hhhhhccccceeEEEEec-CccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEe
Confidence 456889999999999998 778999999999999999976 678888899999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC-------------
Q 003445 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD------------- 154 (819)
Q Consensus 88 l~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspd------------- 154 (819)
+.++-++.++.+|...|..++.+.||.++++++.|.+|++|-+.++++...+..|..+|.|++|-|.
T Consensus 222 ~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~ 301 (406)
T KOG0295|consen 222 CDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGST 301 (406)
T ss_pred cccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999872
Q ss_pred --CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeE
Q 003445 155 --GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRC 232 (819)
Q Consensus 155 --g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~s 232 (819)
+.++++++.|++|++||+.++.++.++.+|...|..++|+|.|+||+++..|+++++||+++++++..+..|...+++
T Consensus 302 ~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~ 381 (406)
T KOG0295|consen 302 NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTS 381 (406)
T ss_pred CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEE
Confidence 258999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCEEEEEECC-CEEEEE
Q 003445 233 LTFNPDGRTLLCGLHE-SLKVFS 254 (819)
Q Consensus 233 l~fspdg~~Lasgs~d-~I~Vwd 254 (819)
+.|+.+..++++|+-+ .+++|.
T Consensus 382 lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 382 LDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred EecCCCCceEEeccccceeeeee
Confidence 9999999999999876 688885
No 40
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1e-28 Score=275.97 Aligned_cols=288 Identities=25% Similarity=0.421 Sum_probs=255.9
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (819)
..+.|..+.|..++|--+..++|++++..+.+++|++.+..+. .+.||+..|.++....+|.+|++|+.|.++++|.++
T Consensus 317 k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 317 KQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred hhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEec
Confidence 4677888899999986557789999999999999998877776 789999999999966778999999999999999885
Q ss_pred CCe----EEEEEcCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCe-----EEE----EEecCCCCeEEEEEcCCC
Q 003445 90 EAK----IVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKG-----CIH----TYKGHTRGVNAIRFTPDG 155 (819)
Q Consensus 90 s~~----~i~~l~~h~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~t~~-----~i~----~~~~h~~~I~sl~fspdg 155 (819)
.+. ++....+|...|.+++++..+ .+|+++|.|++|++|++...+ .+. +...|...|+|++++|+.
T Consensus 396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd 475 (775)
T KOG0319|consen 396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND 475 (775)
T ss_pred CCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC
Confidence 442 455677999999999997655 489999999999999998622 111 234699999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEE
Q 003445 156 RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTF 235 (819)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~f 235 (819)
+.+++|+.|.+.+||++........+.+|...|+++.|+|+...++++|.|++|+||.+.++.++.++.+|...|..+.|
T Consensus 476 kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F 555 (775)
T KOG0319|consen 476 KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASF 555 (775)
T ss_pred ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEECCC-EEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEecC
Q 003445 236 NPDGRTLLCGLHES-LKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 236 spdg~~Lasgs~d~-I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~ 298 (819)
-.+|+.|++++.++ +++|+.++..|...++.+...+..+.. +.+..+++|+.||.|.+|.=.+
T Consensus 556 ~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 556 IRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred eeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 99999999776665 999999999999999999999988876 6778999999999999995444
No 41
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.8e-28 Score=267.31 Aligned_cols=255 Identities=24% Similarity=0.448 Sum_probs=234.5
Q ss_pred cccceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003445 4 KRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTI 83 (819)
Q Consensus 4 kr~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I 83 (819)
.+...+..|.-..-+|++.+|-+ ..+.+++|++|..|+||+.++++.++.+..|.+.|+|++.+|...++++++.|-+|
T Consensus 43 etqtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~i 121 (794)
T KOG0276|consen 43 ETQTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTI 121 (794)
T ss_pred ccceeeeeeeecccchhhheeee-ccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEE
Confidence 44555667777788999999998 77899999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCC-eEEEEEcCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC--CCEEE
Q 003445 84 KLWDLEEA-KIVRTLTGHRSNCISVDFHPF-GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD--GRWVV 159 (819)
Q Consensus 84 ~IWDl~s~-~~i~~l~~h~~~I~sl~fsp~-g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspd--g~~L~ 159 (819)
++||++.. .+.+++.||...|++++|.|. .+.|++++.|++|++|.+.+..+..++++|...|+|+.|-+. ..+|+
T Consensus 122 KlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylI 201 (794)
T KOG0276|consen 122 KLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLI 201 (794)
T ss_pred EEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEE
Confidence 99999864 678999999999999999995 568999999999999999999999999999999999999884 46999
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCC
Q 003445 160 SGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG 239 (819)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg 239 (819)
+|++|..|+|||.++..|++++.+|...|..+.|||.-.++++|++||+++||+..+.++...+.-....++|++-.+.+
T Consensus 202 sgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~ 281 (794)
T KOG0276|consen 202 SGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGD 281 (794)
T ss_pred ecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999888888778889999999999
Q ss_pred CEEEEEECCCEEEEEecCCc
Q 003445 240 RTLLCGLHESLKVFSWEPIR 259 (819)
Q Consensus 240 ~~Lasgs~d~I~Vwd~~~~~ 259 (819)
..+++|.+.+..+..+-...
T Consensus 282 ~~i~vG~Deg~i~v~lgree 301 (794)
T KOG0276|consen 282 GKIAVGFDEGSVTVKLGREE 301 (794)
T ss_pred CeEEEeccCCcEEEEccCCC
Confidence 99999999887776664433
No 42
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-27 Score=240.54 Aligned_cols=285 Identities=20% Similarity=0.292 Sum_probs=247.0
Q ss_pred EEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003445 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE 90 (819)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s 90 (819)
-++||..+++.+.|+. ++.+|++++.|....||-..+|+.+-++.||++.|+|+..+.+.+++++|+.|.++++||+++
T Consensus 5 ~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecC-CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 4679999999999998 778999999999999999989999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCCeEEEEEecCCCEEEEEEC-----CCcEEEEECC-------CCeEEEEEecCCCCeEEEEEcCCCCEE
Q 003445 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGSL-----DTNLKIWDIR-------KKGCIHTYKGHTRGVNAIRFTPDGRWV 158 (819)
Q Consensus 91 ~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~-----Dg~I~IwDi~-------t~~~i~~~~~h~~~I~sl~fspdg~~L 158 (819)
|+++..+. ...+|..+.|+++|++++.... .+.|.++|++ ..+++..+..+.+.++..-|.|-+++|
T Consensus 84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 99999998 6678999999999998877654 4679999998 456778888888999999999999999
Q ss_pred EEEECCCeEEEEECCCCeE-EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeC
Q 003445 159 VSGGEDNTVKLWDLTAGKL-LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP 237 (819)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~-i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fsp 237 (819)
++|..||.|.+||+++|+. +.....|...|+.|+++++..++++++.|.+-++||..+.+.+.++... .+|++.+++|
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te-~PvN~aaisP 241 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE-RPVNTAAISP 241 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeec-ccccceeccc
Confidence 9999999999999999855 4445679999999999999999999999999999999999999888654 7899999999
Q ss_pred CCCEEEEEECCC---EE------------EEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEecC
Q 003445 238 DGRTLLCGLHES---LK------------VFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 238 dg~~Lasgs~d~---I~------------Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~ 298 (819)
-...++.|+... +. +|+.-..+.+.-+..++.++..+.+ ++|+..++|+.||.|++.-++.
T Consensus 242 ~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 242 LLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 877777664321 11 1111111223446889999999988 6899999999999999987764
No 43
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=4.2e-28 Score=271.04 Aligned_cols=307 Identities=26% Similarity=0.488 Sum_probs=254.6
Q ss_pred cccceEEEEeccCCCEEEEEEeeCCC-cEEEEEeCCCeEEEEECCCCc-eEEEecCCCCCeEEEEEcCCCCEEEEEECCC
Q 003445 4 KRAYKLQEFVAHSSTVNCLKIGRKSS-RVLVTGGEDHKVNLWAIGKPN-AILSLSGHTSGIDSVSFDSSEVLVAAGAASG 81 (819)
Q Consensus 4 kr~~kl~~~~~H~~~V~~lafsp~~~-~~Latgs~Dg~V~IWdl~~~~-~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG 81 (819)
+..+.+..|+||.+.|..+.|+|+-. .+|++|+.|+.+++||+.+.. ++..+..|.+.|++++|.+|+..+++++.|.
T Consensus 135 ~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDk 214 (775)
T KOG0319|consen 135 KNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDK 214 (775)
T ss_pred eCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCc
Confidence 34678899999999999999999543 468999999999999998544 4778889999999999999999888999999
Q ss_pred eEEEEECCCCe--------------------------EEEE---------------------------------------
Q 003445 82 TIKLWDLEEAK--------------------------IVRT--------------------------------------- 96 (819)
Q Consensus 82 ~I~IWDl~s~~--------------------------~i~~--------------------------------------- 96 (819)
.+.+||+.+.+ .+.+
T Consensus 215 vi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~ 294 (775)
T KOG0319|consen 215 VIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMS 294 (775)
T ss_pred EEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccC
Confidence 99999862110 0000
Q ss_pred ------------------------------------------------------------------EcCCCCCeEEEEEe
Q 003445 97 ------------------------------------------------------------------LTGHRSNCISVDFH 110 (819)
Q Consensus 97 ------------------------------------------------------------------l~~h~~~I~sl~fs 110 (819)
+.||...|.+++..
T Consensus 295 ~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~ 374 (775)
T KOG0319|consen 295 QLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVW 374 (775)
T ss_pred ceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeec
Confidence 23677777777754
Q ss_pred cCCCEEEEEECCCcEEEEECCCCe----EEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeE-----EE-
Q 003445 111 PFGEFFASGSLDTNLKIWDIRKKG----CIHTYKGHTRGVNAIRFTPDG-RWVVSGGEDNTVKLWDLTAGKL-----LH- 179 (819)
Q Consensus 111 p~g~~Lasgs~Dg~I~IwDi~t~~----~i~~~~~h~~~I~sl~fspdg-~~L~sgs~Dg~I~IwDl~t~~~-----i~- 179 (819)
.+|.+|++|+.|.++++|.++++. ++....+|...|.+++++..+ .+|++++.|++|++|++...+. ..
T Consensus 375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~ 454 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLT 454 (775)
T ss_pred ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceeh
Confidence 567799999999999999774432 456677999999999997643 5899999999999999976221 11
Q ss_pred ---EEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEe
Q 003445 180 ---DFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (819)
Q Consensus 180 ---~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (819)
....|...|+|++++|+.+++|+||.|++.+||+++....+..+.+|..+|.++.|++..+.|++++.| +++||.+
T Consensus 455 ~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~i 534 (775)
T KOG0319|consen 455 CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSI 534 (775)
T ss_pred hhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEe
Confidence 234699999999999999999999999999999999999999999999999999999999999998877 6999999
Q ss_pred cCCceeeeeeccccceeE-eEecCCCEEEEEEcCCeEEEEEecCCceeeeeecccc
Q 003445 256 EPIRCHDAVDVGWSRLSD-LNVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVT 310 (819)
Q Consensus 256 ~~~~~~~~~~~~~s~i~~-l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~p~~~~~~~ 310 (819)
.+..|.+.+..+.+.+.- .+..+|+.|++++.||-+++|++.+.....-...+.-
T Consensus 535 s~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D 590 (775)
T KOG0319|consen 535 STFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND 590 (775)
T ss_pred ccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc
Confidence 999999999988766544 4558999999999999999999999988765544433
No 44
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.6e-28 Score=254.99 Aligned_cols=287 Identities=16% Similarity=0.298 Sum_probs=244.8
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC---ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP---NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIK 84 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~---~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (819)
..+.+..|.+.|+-+.|++ +|+|||+++.|.+..||.+... +..+++.+|..+|..+.|+||.++|++++.+..+.
T Consensus 216 t~qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhhhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 3456789999999999999 8899999999999999988544 44778889999999999999999999999999999
Q ss_pred EEECCCCeEEEEEc-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCCEEEEEE
Q 003445 85 LWDLEEAKIVRTLT-GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT-RGVNAIRFTPDGRWVVSGG 162 (819)
Q Consensus 85 IWDl~s~~~i~~l~-~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~-~~I~sl~fspdg~~L~sgs 162 (819)
+||+.+|.....+. +|...+.+++|.|||..|++|+.|+.|..||++. ..+..+++-. ..|.+++.++||+++++.+
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEEe
Confidence 99999999887775 3457899999999999999999999999999864 3344444332 4599999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCC--eeEEEEeC-CC
Q 003445 163 EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSG--VRCLTFNP-DG 239 (819)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~--I~sl~fsp-dg 239 (819)
.|..|++++..+........ ...+|++++.+.+++++++.-.+..+++||++....+..+.+|... +-.-+|-- +.
T Consensus 374 ~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~ 452 (519)
T KOG0293|consen 374 VDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGND 452 (519)
T ss_pred cccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCc
Confidence 99999999988765554333 4578999999999999999999999999999988888888877543 34445543 45
Q ss_pred CEEEEEECC-CEEEEEecCCceeeeeeccccceeEeEe--cCCCEEEEEEcCCeEEEEEec
Q 003445 240 RTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 240 ~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~--~dg~lLa~~~~Dg~V~IW~ld 297 (819)
.++++|+.| .|+||+-.+++...++..+...+..+.+ .+-.++|++++||+|+||..+
T Consensus 453 ~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 453 KFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 789999988 4999999999999999999888888777 466899999999999999765
No 45
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=4.1e-27 Score=262.89 Aligned_cols=283 Identities=24% Similarity=0.374 Sum_probs=254.1
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (819)
.++.+|...|..++++. +..++++| ..+.++||+..+.+++.++.. +.+.+..|.|.++++++|...|.+.+||+.
T Consensus 367 i~~~GHR~dVRsl~vS~-d~~~~~Sg-a~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSS-DSILLASG-AGESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLA 442 (888)
T ss_pred eeeccchhheeEEEeec-Cceeeeec-CCCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEee
Confidence 47889999999999996 44444444 567899999999999999985 489999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-----CeE--E------EEEecCCCCeEEEEEcCCCC
Q 003445 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK-----KGC--I------HTYKGHTRGVNAIRFTPDGR 156 (819)
Q Consensus 90 s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t-----~~~--i------~~~~~h~~~I~sl~fspdg~ 156 (819)
+...+.++..|.+.|++++..|++..+++|+.|.+|++||..- +.. + .++. -...|.|+.++|||+
T Consensus 443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGK 521 (888)
T ss_pred hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCc
Confidence 9999999999999999999999999999999999999999741 111 1 1122 346799999999999
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEe
Q 003445 157 WVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN 236 (819)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fs 236 (819)
+|+.+--|.+++||-+.+-+....+.+|.-+|.||..+||++++++|+.|..|++|-++-|.+-..+-+|...|.++.|.
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~ 601 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL 601 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEec
Q 003445 237 PDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 237 pdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld 297 (819)
|+...+++++.+ .++-||-+..++.+.++.+...+.++.. ++|.++++++.|..|++|.-.
T Consensus 602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred ccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 988888877666 5999999999999999999999988876 899999999999999999654
No 46
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=6.5e-27 Score=269.41 Aligned_cols=278 Identities=27% Similarity=0.491 Sum_probs=249.4
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEE-ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILS-LSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI 93 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~-l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~ 93 (819)
|...|.|..|. ..+++++..|++|++|+..++..+.. +.+|.+.|.+++|...+.++++|+.|.++++||..+|++
T Consensus 207 ~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 207 DDHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred Ccchhhhheee---cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 56789999997 34699999999999999999999888 999999999999988788999999999999999999999
Q ss_pred EEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 94 VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT 173 (819)
Q Consensus 94 i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~ 173 (819)
...+.+|.+.+.++... ..++++|+.|.+|++|++.++.++..+.+|..+|.++.++ +.++++|+.||+|++||+.
T Consensus 284 ~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence 99999999999998876 5678889999999999999999999999999999999998 8899999999999999999
Q ss_pred CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC-eEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEE
Q 003445 174 AGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF-ELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLK 251 (819)
Q Consensus 174 t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~-~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~ 251 (819)
++++++.+.+|...|+++.+... ..+++|+.|++|++||++++ +++..+..|..-+..+.+ .+++|++++.+ .|+
T Consensus 360 ~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik 436 (537)
T KOG0274|consen 360 TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIK 436 (537)
T ss_pred hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEE
Confidence 99999999999999999988765 79999999999999999999 999999999888876665 56788888766 599
Q ss_pred EEEecCCceeeeeecc-ccceeEeEecCCCEEEEEEcCCeEEEEEecCCceee
Q 003445 252 VFSWEPIRCHDAVDVG-WSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 252 Vwd~~~~~~~~~~~~~-~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~p 303 (819)
+||.+.+++..++... ...+..+... ...+++++.|+.+.+||+..+....
T Consensus 437 ~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 437 LWDAEEGECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred EeecccCceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEecccCchhh
Confidence 9999999999998874 3444433322 5889999999999999999888764
No 47
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=3.6e-26 Score=247.25 Aligned_cols=303 Identities=21% Similarity=0.374 Sum_probs=259.4
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce--EEEecCCCCCeEEEEEcCCCCEEEEEECC----C
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA--ILSLSGHTSGIDSVSFDSSEVLVAAGAAS----G 81 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~--i~~l~~h~~~V~~l~fspdg~~Lasgs~D----G 81 (819)
....+..|...++-..|+| .+.|+|+|...|+|+|||...... ..++....++|..+.|+.+++.|++.+.. |
T Consensus 51 ~~~iYtEH~~~vtVAkySP-sG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg 129 (603)
T KOG0318|consen 51 SVDIYTEHAHQVTVAKYSP-SGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG 129 (603)
T ss_pred ceeeeccccceeEEEEeCC-CceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcccee
Confidence 3567889999999999999 688999999999999999855333 23566678999999999999988776542 4
Q ss_pred eEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCE-EEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 003445 82 TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEF-FASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVS 160 (819)
Q Consensus 82 ~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~-Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~s 160 (819)
.+.+|| +|..+..+.+|...|.+++|-|...+ +++|+.|++|.+|+-.-.+...++..|...|.|+.|+|||.++++
T Consensus 130 ~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat 207 (603)
T KOG0318|consen 130 HVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFAT 207 (603)
T ss_pred EEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEE
Confidence 555565 77888999999999999999998775 999999999999998777888888999999999999999999999
Q ss_pred EECCCeEEEEECCCCeEEEEEe---cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCC---CCeeEEE
Q 003445 161 GGEDNTVKLWDLTAGKLLHDFK---CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET---SGVRCLT 234 (819)
Q Consensus 161 gs~Dg~I~IwDl~t~~~i~~~~---~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~---~~I~sl~ 234 (819)
++.||+|.+||-.+|+.+..+. +|.+.|.++.|+||+..+++.+.|.+++|||+.+.+++.++.... .....+.
T Consensus 208 ~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l 287 (603)
T KOG0318|consen 208 AGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL 287 (603)
T ss_pred ecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE
Confidence 9999999999999999999998 799999999999999999999999999999999999988875432 2334555
Q ss_pred EeCCCCEEEEEECCCEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCCceeeee-eccccee
Q 003445 235 FNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYT-IGSVTRV 312 (819)
Q Consensus 235 fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~~~p~~-~~~~~~~ 312 (819)
|. .+.++.+...+.|.+++........++..+...++.+.. +++++|.+|+.||.|.-|+...+...++. .++..++
T Consensus 288 Wq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI 366 (603)
T KOG0318|consen 288 WQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQI 366 (603)
T ss_pred Ee-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceE
Confidence 66 555666677778999999888888899999999999887 68899999999999999999998887764 5555554
Q ss_pred cc
Q 003445 313 NG 314 (819)
Q Consensus 313 n~ 314 (819)
.+
T Consensus 367 ~~ 368 (603)
T KOG0318|consen 367 KG 368 (603)
T ss_pred EE
Confidence 44
No 48
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=5.6e-28 Score=240.34 Aligned_cols=289 Identities=18% Similarity=0.347 Sum_probs=261.5
Q ss_pred EEEeccCCCEEEEEEee--CCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 10 QEFVAHSSTVNCLKIGR--KSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp--~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
....+|+.+|..++|+| .++.+|++++.||.-.+-+=+++..+-++.+|.+.|+....+.+...-++++.|=+-++||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 46789999999999987 5788999999999999999999999999999999999999999988999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe-EEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003445 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG-CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (819)
Q Consensus 88 l~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~-~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~ 166 (819)
.-+|..+..+. |..-|.+++|+.|.++|++|+.+..++|||++..+ +...+.+|.+.|..+.|....+.|+++..|++
T Consensus 88 a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t 166 (334)
T KOG0278|consen 88 AVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT 166 (334)
T ss_pred hhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence 99999999987 99999999999999999999999999999998654 56678899999999999998899999999999
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003445 167 VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (819)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs 246 (819)
|++||.++++.++.+. ...+|+++.++++|.+|.++. .+.|.+||..++.++..++.. ..|.+..++|+...+++|+
T Consensus 167 VRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGg 243 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGG 243 (334)
T ss_pred eEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccCc-cccccccccCCCceEEecC
Confidence 9999999999999887 578899999999998887764 578999999999999887654 5589999999998888887
Q ss_pred CC-CEEEEEecCCceeeee-eccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCCcee
Q 003445 247 HE-SLKVFSWEPIRCHDAV-DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIE 302 (819)
Q Consensus 247 ~d-~I~Vwd~~~~~~~~~~-~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~~~ 302 (819)
.+ .++.||+.++..+..+ ..+..++.++.+ ++|.+.++|+.||+|++|.+..++.-
T Consensus 244 ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 244 EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred cceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 77 4889999999888875 788899988877 89999999999999999988876644
No 49
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=1.4e-26 Score=241.34 Aligned_cols=287 Identities=18% Similarity=0.280 Sum_probs=252.5
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
.+.++.+|++.|+|+.|+. ++.+||||+-+|.|+||...++.....+...-..|.=+.|+|.+..|++|+.||.+.+|.
T Consensus 98 ~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ 176 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQ 176 (399)
T ss_pred ceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEE
Confidence 5678999999999999998 788999999999999999999999998876677889999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEECCCe
Q 003445 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG-HTRGVNAIRFTPDGRWVVSGGEDNT 166 (819)
Q Consensus 88 l~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~-h~~~I~sl~fspdg~~L~sgs~Dg~ 166 (819)
+.++...+.+.||..++++=.|.|+|+.++++..||+|++|++.++.++..+.. ......++.++..+..++.|..++.
T Consensus 177 ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~ 256 (399)
T KOG0296|consen 177 IPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV 256 (399)
T ss_pred CCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc
Confidence 999889999999999999999999999999999999999999999999988863 3456788999999999999999999
Q ss_pred EEEEECCCCeEEEEEec--------CCCCeEEEEEeC---CCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEE
Q 003445 167 VKLWDLTAGKLLHDFKC--------HEGQIQCIDFHP---HEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTF 235 (819)
Q Consensus 167 I~IwDl~t~~~i~~~~~--------h~~~I~sl~fsp---dg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~f 235 (819)
+++.+..+|+.+..+.+ +...+.|+.+.| .=.+.|+|+.||+|.|||+...++.+.. .|..+|..+.|
T Consensus 257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w 335 (399)
T KOG0296|consen 257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKW 335 (399)
T ss_pred EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEE
Confidence 99999999998888772 344445555444 5678899999999999999987765544 56677999999
Q ss_pred eCCCCEEEEEEC-CCEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEec
Q 003445 236 NPDGRTLLCGLH-ESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 236 spdg~~Lasgs~-d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld 297 (819)
-+ ..+|++++. +.++.||..++++...+..+...|.++.. ++++++++++.|+..+||++.
T Consensus 336 ~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 336 LN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 98 556666655 56999999999999999999999988876 889999999999999999864
No 50
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=9.1e-27 Score=243.68 Aligned_cols=277 Identities=26% Similarity=0.443 Sum_probs=240.9
Q ss_pred ccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCC
Q 003445 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDS---SEVLVAAGAASGTIKLWDLEE 90 (819)
Q Consensus 14 ~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fsp---dg~~Lasgs~DG~I~IWDl~s 90 (819)
.|.+.|.++... +..+++|++||.+++||. .|+..+.+.||.++|..++|.- ....|++++.|.++++|-++.
T Consensus 103 ~hdDWVSsv~~~---~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA---SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc---CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 488889988886 467999999999999996 6999999999999999998843 334699999999999999987
Q ss_pred CeE----EEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC-------------------------CCeEEEEEec
Q 003445 91 AKI----VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR-------------------------KKGCIHTYKG 141 (819)
Q Consensus 91 ~~~----i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~-------------------------t~~~i~~~~~ 141 (819)
+.. +..-.||...|.++...++|..|++|+.|..|+||+.. ++.++.++.+
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 653 33345999999999999999999999999999999932 1235677889
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe---
Q 003445 142 HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE--- 218 (819)
Q Consensus 142 h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~--- 218 (819)
|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+.+ ...++|+..+|...+|++|+.|..|++||.+++.
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 999999999997 66799999999999999999999888874 6789999999999999999999999999998754
Q ss_pred EEEEeCCCCCCeeEEEEeCCCCEEE-EEECC-CEEEEEecCCc-eeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEE
Q 003445 219 LIGSAGPETSGVRCLTFNPDGRTLL-CGLHE-SLKVFSWEPIR-CHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWV 295 (819)
Q Consensus 219 ~l~~~~~~~~~I~sl~fspdg~~La-sgs~d-~I~Vwd~~~~~-~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ 295 (819)
..+.+.+|.+.|.++.|+|...+++ +|+.| .+++||..+.+ .+..+..++..+.++.+.++.++++|+.|++|+|+.
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFK 416 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEec
Confidence 4566889999999999999877665 55555 69999999877 788888999999999999999999999999999985
Q ss_pred e
Q 003445 296 V 296 (819)
Q Consensus 296 l 296 (819)
-
T Consensus 417 ~ 417 (423)
T KOG0313|consen 417 G 417 (423)
T ss_pred c
Confidence 3
No 51
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=4.4e-28 Score=247.83 Aligned_cols=280 Identities=21% Similarity=0.386 Sum_probs=245.6
Q ss_pred ccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec--------CCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS--------GHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (819)
Q Consensus 14 ~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~--------~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (819)
+..+-+.|..|+| +++||++|+.||.|.+||..+|+..+.++ -+..+|.|+.|+.|..++++|+.||.|++
T Consensus 211 g~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 4566789999999 78899999999999999998887655443 47889999999999999999999999999
Q ss_pred EECCCCeEEEEEc-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003445 86 WDLEEAKIVRTLT-GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (819)
Q Consensus 86 WDl~s~~~i~~l~-~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~D 164 (819)
|.+++|.+++.|. .|...|+|+.|+.|+..+++++.|.++++.-+.+|+++..+++|.+.|+...|.+||.++++++.|
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 9999999999987 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEec--CCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCCeEEEEeCC---CCCCeeEEEEeCC
Q 003445 165 NTVKLWDLTAGKLLHDFKC--HEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIGSAGP---ETSGVRCLTFNPD 238 (819)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~--h~~~I~sl~fspd-g~~Lasgs~Dg~I~iwDl~~~~~l~~~~~---~~~~I~sl~fspd 238 (819)
|+|++|+..+.+++.+|+. ...+|+++..-|. ...++++...++|+|.++. |+.+..+.. ..+...+.+.+|.
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpk 448 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPK 448 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCC
Confidence 9999999999999999984 4557888887774 5688888889999999986 677766633 3566777889999
Q ss_pred CCEEEEEECCC-EEEEEecCCceeeeeeccccceeEeEecC-CCEEEEEEcCCeEEEEE
Q 003445 239 GRTLLCGLHES-LKVFSWEPIRCHDAVDVGWSRLSDLNVHE-GKLLGCSYNQSCVGVWV 295 (819)
Q Consensus 239 g~~Lasgs~d~-I~Vwd~~~~~~~~~~~~~~s~i~~l~~~d-g~lLa~~~~Dg~V~IW~ 295 (819)
|.++++.+.|+ +..|...+++....+.++...+-.+..|. ..++++-+.||.+.+|.
T Consensus 449 GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 99999887775 77888888988888888887776776654 46777888999999995
No 52
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=9.5e-27 Score=237.40 Aligned_cols=263 Identities=24% Similarity=0.381 Sum_probs=228.7
Q ss_pred eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q 003445 51 AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE-EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWD 129 (819)
Q Consensus 51 ~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~-s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwD 129 (819)
.+..+.+|.+.|+.+.|+|+|.+|++|+.|..|.+|++. .-+-...+++|.+.|..+.|.+++..+++++.|.+|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 455678999999999999999999999999999999964 4456677889999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCe
Q 003445 130 IRKKGCIHTYKGHTRGVNAIRFTPDGR-WVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRT 208 (819)
Q Consensus 130 i~t~~~i~~~~~h~~~I~sl~fspdg~-~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~ 208 (819)
.+++++++.+++|...++.+.-+.-|. ++.+|+.|+++++||+++...++++. ...+++++.|...+.-+++|+-|+.
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCc
Confidence 999999999999999999988554454 56678899999999999999988886 3678999999999999999999999
Q ss_pred EEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCC----ceeeeeecccc-----ceeEeEecC
Q 003445 209 VKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPI----RCHDAVDVGWS-----RLSDLNVHE 278 (819)
Q Consensus 209 I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~----~~~~~~~~~~s-----~i~~l~~~d 278 (819)
|++||++....+..+.+|..+|+.+..+++|.++.+-+.+ .+++||+.+. +|..++..+-. .+.+-..++
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 9999999999999999999999999999999999987655 7999999863 55666543322 223333488
Q ss_pred CCEEEEEEcCCeEEEEEecCCceeeeeecccceecc
Q 003445 279 GKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNG 314 (819)
Q Consensus 279 g~lLa~~~~Dg~V~IW~ld~~~~~p~~~~~~~~~n~ 314 (819)
+..+.+|+.|..|++||....++..+..|+...+|.
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~ 313 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNE 313 (338)
T ss_pred CCccccccccceEEEeecccccEEEEcCCcceeEEE
Confidence 999999999999999999999999888888777664
No 53
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.4e-27 Score=267.91 Aligned_cols=293 Identities=20% Similarity=0.374 Sum_probs=221.5
Q ss_pred cceEEEEe-ccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCC----------CCCeEEEEEcC-----
Q 003445 6 AYKLQEFV-AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGH----------TSGIDSVSFDS----- 69 (819)
Q Consensus 6 ~~kl~~~~-~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h----------~~~V~~l~fsp----- 69 (819)
.+..|++. +|.+.|+|+.|++ +|+|||+||+||.|+||.+...+....-.+. .+.+..+.-++
T Consensus 256 l~~~Qe~~~ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 256 LTVVQEISNAHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred eEEeeccccccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccc
Confidence 45567888 9999999999999 8889999999999999998553321110000 00011111111
Q ss_pred CCCEEEEEECCCeEEEEECC----CCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCC
Q 003445 70 SEVLVAAGAASGTIKLWDLE----EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRG 145 (819)
Q Consensus 70 dg~~Lasgs~DG~I~IWDl~----s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~ 145 (819)
.....-.+..... .+.+.. ..++++.+.||.+.|..|.|+. .++|++++.|.+|++|++....|+..|. |...
T Consensus 335 ~~s~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-Hndf 411 (712)
T KOG0283|consen 335 RTSSSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDF 411 (712)
T ss_pred cccccccccCCcc-ccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCe
Confidence 0111112222222 222222 3467888999999999999996 5599999999999999999999999997 9999
Q ss_pred eEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeC
Q 003445 146 VNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG 224 (819)
Q Consensus 146 I~sl~fsp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~ 224 (819)
|+|++|+| |.+||++|+-||.|+||++...+.+.....+ .-|++++|.|||++.++|+.+|.+++|+....++.....
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 99999999 8899999999999999999988877766654 789999999999999999999999999999887765532
Q ss_pred CC--------CCCeeEEEEeCCCC--EEEEEECCCEEEEEecCCceeeee---eccccceeEeEecCCCEEEEEEcCCeE
Q 003445 225 PE--------TSGVRCLTFNPDGR--TLLCGLHESLKVFSWEPIRCHDAV---DVGWSRLSDLNVHEGKLLGCSYNQSCV 291 (819)
Q Consensus 225 ~~--------~~~I~sl~fspdg~--~Lasgs~d~I~Vwd~~~~~~~~~~---~~~~s~i~~l~~~dg~lLa~~~~Dg~V 291 (819)
.+ ...|+.+.|.|... .|++..+..|+|||.........+ ....+.+..-+..||+.|+++++|..|
T Consensus 491 I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 491 IRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWV 570 (712)
T ss_pred EeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceE
Confidence 11 23699999997644 666666667999999665554443 344455666666799999999999999
Q ss_pred EEEEecCCceee
Q 003445 292 GVWVVDISRIEP 303 (819)
Q Consensus 292 ~IW~ld~~~~~p 303 (819)
+||+++......
T Consensus 571 YiW~~~~~~~~~ 582 (712)
T KOG0283|consen 571 YIWKNDSFNSEA 582 (712)
T ss_pred EEEeCCCCcccc
Confidence 999998766543
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=7.8e-26 Score=277.26 Aligned_cols=239 Identities=23% Similarity=0.380 Sum_probs=210.0
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeE
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEEAKI 93 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~s~~~ 93 (819)
+...|.+++|++..+.+|++++.||.|+|||+.+++.+..+.+|...|++++|+| ++.+|++|+.||.|++||+.++..
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~ 610 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS 610 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence 3468999999987788999999999999999999999999999999999999997 789999999999999999999998
Q ss_pred EEEEcCCCCCeEEEEEe-cCCCEEEEEECCCcEEEEECCCCe-EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 94 VRTLTGHRSNCISVDFH-PFGEFFASGSLDTNLKIWDIRKKG-CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (819)
Q Consensus 94 i~~l~~h~~~I~sl~fs-p~g~~Lasgs~Dg~I~IwDi~t~~-~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwD 171 (819)
+..+..+ ..+.++.|+ +++.+|++|+.||.|++||+++.. .+..+.+|...|.++.|. ++.+|++++.|+.|++||
T Consensus 611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWD 688 (793)
T ss_pred EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEe
Confidence 8888754 679999995 468999999999999999998765 567788999999999997 788999999999999999
Q ss_pred CCC------CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe-------------CCCCCCeeE
Q 003445 172 LTA------GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA-------------GPETSGVRC 232 (819)
Q Consensus 172 l~t------~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~-------------~~~~~~I~s 232 (819)
++. .+.+..+.+|...+.+++|+|++.+|++|+.|+.|++|+......+..+ ..+...|.+
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~ 768 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS 768 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence 974 3577888999999999999999999999999999999998765433221 223456999
Q ss_pred EEEeCCCCEEEEEECC-CEEEEEe
Q 003445 233 LTFNPDGRTLLCGLHE-SLKVFSW 255 (819)
Q Consensus 233 l~fspdg~~Lasgs~d-~I~Vwd~ 255 (819)
++|++++..|++|+.+ .|+||++
T Consensus 769 v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 769 VCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCCeEEEecCCCcEEEEec
Confidence 9999999999988766 5999985
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.7e-26 Score=228.29 Aligned_cols=248 Identities=19% Similarity=0.311 Sum_probs=219.9
Q ss_pred eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 003445 51 AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDI 130 (819)
Q Consensus 51 ~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi 130 (819)
....+.+|.++|.++.|+-+|+|.++++.|.+|++|+...+.+++++.+|...|..++.+.|+..|++|+.|..|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCe
Q 003445 131 RKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG--KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRT 208 (819)
Q Consensus 131 ~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~--~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~ 208 (819)
.+|+.++.+.+|...|+.++|+.+...+++|+.|..+++||.++. ++++.+......|.++... +..+++|+.||+
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt 166 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT 166 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence 999999999999999999999999999999999999999999864 6788887777889998875 568999999999
Q ss_pred EEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeEe---cCCCEEEE
Q 003445 209 VKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV---HEGKLLGC 284 (819)
Q Consensus 209 I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~---~dg~lLa~ 284 (819)
++.||++.|+.....- ..+|++++|++||++.++++-+ .+++.|-++++.++.+..+-..-..+.. .....++.
T Consensus 167 vRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~s 244 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFS 244 (307)
T ss_pred EEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEe
Confidence 9999999998776543 5689999999999999888766 6999999999998888766544333322 45578889
Q ss_pred EEcCCeEEEEEecCCcee
Q 003445 285 SYNQSCVGVWVVDISRIE 302 (819)
Q Consensus 285 ~~~Dg~V~IW~ld~~~~~ 302 (819)
|++||.|++||+-...+.
T Consensus 245 gSEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 245 GSEDGKVYFWDLVDETQI 262 (307)
T ss_pred ccCCceEEEEEeccceee
Confidence 999999999998766544
No 56
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.2e-26 Score=231.69 Aligned_cols=279 Identities=20% Similarity=0.381 Sum_probs=228.2
Q ss_pred CEEEEEEeeCCCcEEEEE-------eCCCeEEEEECCCCceEEEec--CCCCCeEEEEEcCC-CCEEEEEECCCeEEEEE
Q 003445 18 TVNCLKIGRKSSRVLVTG-------GEDHKVNLWAIGKPNAILSLS--GHTSGIDSVSFDSS-EVLVAAGAASGTIKLWD 87 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latg-------s~Dg~V~IWdl~~~~~i~~l~--~h~~~V~~l~fspd-g~~Lasgs~DG~I~IWD 87 (819)
.=.++.|+|--.+.|+++ ...|++.|.++..++-+..+. .-.+.+..++|+++ ++.+++++.||++++||
T Consensus 10 ~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 10 HGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFD 89 (311)
T ss_pred ccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEec
Confidence 345788998555555554 246899999996555444333 24678999999985 46788889999999999
Q ss_pred CC-CCeEEEEEcCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEECC
Q 003445 88 LE-EAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVVSGGED 164 (819)
Q Consensus 88 l~-s~~~i~~l~~h~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fsp-dg~~L~sgs~D 164 (819)
+. ...+++.++.|...|.++.|++.. ..+++++.|++|++|+...+..+.++.+|...|...+|+| .++.+++++.|
T Consensus 90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd 169 (311)
T KOG0277|consen 90 LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGD 169 (311)
T ss_pred cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCC
Confidence 74 346889999999999999999854 5688889999999999999999999999999999999999 78899999999
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEeC-CCCEEEEEECCCeEEEEECCCC-eEEEEeCCCCCCeeEEEEeCCC-CE
Q 003445 165 NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLETF-ELIGSAGPETSGVRCLTFNPDG-RT 241 (819)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~h~~~I~sl~fsp-dg~~Lasgs~Dg~I~iwDl~~~-~~l~~~~~~~~~I~sl~fspdg-~~ 241 (819)
|.+++||++.......+..|...|.|+.|+. +..+|++|+.|+.|+.||+++. .++..+.+|.-.|+.+.|+|.. .+
T Consensus 170 ~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 170 GTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASL 249 (311)
T ss_pred ceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhH
Confidence 9999999987544444888999999999998 5789999999999999999885 4678889999999999999974 46
Q ss_pred EEEEECC-CEEEEEecC-CceeeeeeccccceeEeEe--cCCCEEEEEEcCCeEEEEEe
Q 003445 242 LLCGLHE-SLKVFSWEP-IRCHDAVDVGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVV 296 (819)
Q Consensus 242 Lasgs~d-~I~Vwd~~~-~~~~~~~~~~~s~i~~l~~--~dg~lLa~~~~Dg~V~IW~l 296 (819)
|++++.| +++||+.+. ..+...++.+..-+..+.+ .+..++|.++-|..++||+.
T Consensus 250 LaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 6677777 799999984 4455555555544444433 67899999999999999975
No 57
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=2.8e-28 Score=251.48 Aligned_cols=240 Identities=26% Similarity=0.541 Sum_probs=210.0
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
.+..+.||++.|.|+.|. .+++++|+.|.+|+|||+++++++.++-+|...|..+.|+ +.++++++.|.+|.+||
T Consensus 229 c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWd 303 (499)
T KOG0281|consen 229 CLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWD 303 (499)
T ss_pred HHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEe
Confidence 446788999999999995 4699999999999999999999999999999999999996 45899999999999999
Q ss_pred CCCCe---EEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003445 88 LEEAK---IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (819)
Q Consensus 88 l~s~~---~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~D 164 (819)
+.+.. +.+.+.||...|..+.|. .+|+++++.|.+|++|++.+++++.++.+|...|-|+.+. |+++++|+.|
T Consensus 304 m~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSD 379 (499)
T KOG0281|consen 304 MASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSD 379 (499)
T ss_pred ccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCC
Confidence 98654 335678999999999997 6799999999999999999999999999999999999886 8999999999
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe---------EEEEeCCCCCCeeEEEE
Q 003445 165 NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE---------LIGSAGPETSGVRCLTF 235 (819)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~---------~l~~~~~~~~~I~sl~f 235 (819)
.+|++||+..|.++..+.+|+.-|.|+.|. .+.+++|..||+|++||+..+. ++.....|.+.|..+.|
T Consensus 380 ntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF 457 (499)
T KOG0281|consen 380 NTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF 457 (499)
T ss_pred ceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee
Confidence 999999999999999999999999999995 6689999999999999998754 23344567888999999
Q ss_pred eCCCCEEEEEECCCEEEEEecCCc
Q 003445 236 NPDGRTLLCGLHESLKVFSWEPIR 259 (819)
Q Consensus 236 spdg~~Lasgs~d~I~Vwd~~~~~ 259 (819)
.. -+.+++..++.|-|||+..+-
T Consensus 458 D~-fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 458 DE-FQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred cc-eEEEeccCCCeEEEEEcCCCC
Confidence 52 234444455689999997643
No 58
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2.6e-26 Score=243.38 Aligned_cols=278 Identities=23% Similarity=0.379 Sum_probs=239.4
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~ 96 (819)
..|.++...|. ...+.||+.|..+.++|...++.+..+.||...|+.+.|+++...+++++.|-.|++|..........
T Consensus 220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPS-SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCeeEEeecCC-CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 46888888884 67899999999999999999999999999999999999999999999999999999999988888888
Q ss_pred EcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecC--CCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003445 97 LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH--TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA 174 (819)
Q Consensus 97 l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h--~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t 174 (819)
...|..+|+.+..+|.|.||++++.||+..+.|++++.++...... .-.+++.+|+|||..|.+|..||.|+|||+..
T Consensus 299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 8899999999999999999999999999999999999987766532 24589999999999999999999999999999
Q ss_pred CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC-CCCeeEEEEeCCCCEEEEEECCCEEEE
Q 003445 175 GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE-TSGVRCLTFNPDGRTLLCGLHESLKVF 253 (819)
Q Consensus 175 ~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~-~~~I~sl~fspdg~~Lasgs~d~I~Vw 253 (819)
+..+..|.+|.++|..++|+.||.||++++.|+.|++||++..+.+.++... ..++.++.|.+.|.+|+.+ ...++||
T Consensus 379 ~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy 457 (506)
T KOG0289|consen 379 QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQVY 457 (506)
T ss_pred ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-cceeEEE
Confidence 9999999999999999999999999999999999999999988877666443 3479999999999999988 4457777
Q ss_pred EecC----CceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEe
Q 003445 254 SWEP----IRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 296 (819)
Q Consensus 254 d~~~----~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~l 296 (819)
.+.. -.+...+..+......+.+ ...+++++++.|..++++.+
T Consensus 458 ~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 458 ICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 6662 2333333333334444444 56688999999988887754
No 59
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.4e-26 Score=253.45 Aligned_cols=273 Identities=26% Similarity=0.415 Sum_probs=241.6
Q ss_pred EEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC-
Q 003445 21 CLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG- 99 (819)
Q Consensus 21 ~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~- 99 (819)
-+.|+. .+.|++|.. ..|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+
T Consensus 182 lldWss--~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 182 LLDWSS--ANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred Hhhccc--CCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 456763 446776653 5699999988887666666688999999999999999999999999999999999999998
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 003445 100 HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT-YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLL 178 (819)
Q Consensus 100 h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~-~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i 178 (819)
|...|.+++|. +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|+.++++|+.|+.+.|||.....+.
T Consensus 259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 99999999998 77899999999999999998876655 8899999999999999999999999999999999888899
Q ss_pred EEEecCCCCeEEEEEeCC-CCEEEEEE--CCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE---CCCEEE
Q 003445 179 HDFKCHEGQIQCIDFHPH-EFLLATGS--ADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL---HESLKV 252 (819)
Q Consensus 179 ~~~~~h~~~I~sl~fspd-g~~Lasgs--~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs---~d~I~V 252 (819)
..+..|..+|..++|+|- ..+||+|+ .|++|+|||..+++.+..+... ..|..|.|++..+-|+++. .+.|.|
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg-sQVcsL~Wsk~~kEi~sthG~s~n~i~l 415 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG-SQVCSLIWSKKYKELLSTHGYSENQITL 415 (484)
T ss_pred EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC-CceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence 999999999999999995 67888876 5999999999999999887654 6799999999998888763 346999
Q ss_pred EEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCC
Q 003445 253 FSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDIS 299 (819)
Q Consensus 253 wd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~ 299 (819)
|.+.+.+....+..+...+..+.. +||..+++|..|.++++|++-..
T Consensus 416 w~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 416 WKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 999999988888888888877766 89999999999999999987664
No 60
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2.4e-25 Score=255.87 Aligned_cols=228 Identities=20% Similarity=0.323 Sum_probs=192.6
Q ss_pred EEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC-------ceEEEecCCCCCeEEEEEcCCC-CEEEEEECCCe
Q 003445 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-------NAILSLSGHTSGIDSVSFDSSE-VLVAAGAASGT 82 (819)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~-------~~i~~l~~h~~~V~~l~fspdg-~~Lasgs~DG~ 82 (819)
.+.+|.+.|++++|+|.++.+|++|+.||+|+|||+.++ ..+..+.+|...|.+++|+|++ .+|++|+.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 478999999999999966779999999999999999654 3567889999999999999975 69999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCC-eEEEEEcCCCCEEEEE
Q 003445 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRG-VNAIRFTPDGRWVVSG 161 (819)
Q Consensus 83 I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~-I~sl~fspdg~~L~sg 161 (819)
|+|||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..++++
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999988765 4567899988888776
Q ss_pred E----CCCeEEEEECCCCe-EEEEEecC-CCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCeEEEEeCC-CCCCeeEE
Q 003445 162 G----EDNTVKLWDLTAGK-LLHDFKCH-EGQIQCIDFHPHEFLLATGS-ADRTVKFWDLETFELIGSAGP-ETSGVRCL 233 (819)
Q Consensus 162 s----~Dg~I~IwDl~t~~-~i~~~~~h-~~~I~sl~fspdg~~Lasgs-~Dg~I~iwDl~~~~~l~~~~~-~~~~I~sl 233 (819)
+ .|+.|++||+++.. .+.....+ ...+....|++++.+|++|+ .|+.|++||+.+++.+..... ...++..+
T Consensus 230 G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~ 309 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGL 309 (493)
T ss_pred ecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcce
Confidence 5 47899999998754 33333323 34566678999999999887 599999999999887765433 34456777
Q ss_pred EEeCC
Q 003445 234 TFNPD 238 (819)
Q Consensus 234 ~fspd 238 (819)
+|.|.
T Consensus 310 ~~~pk 314 (493)
T PTZ00421 310 CMMPK 314 (493)
T ss_pred Eeccc
Confidence 77774
No 61
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=8e-25 Score=251.51 Aligned_cols=247 Identities=19% Similarity=0.306 Sum_probs=199.2
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceE-------------EEecCCCCCeEEEEEcC-CCCEEEEEECCC
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI-------------LSLSGHTSGIDSVSFDS-SEVLVAAGAASG 81 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i-------------~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG 81 (819)
-..|+....++++. .+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++|+.||
T Consensus 20 ~~~i~~~~~~~d~~-~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 20 FLNVTPSTALWDCS-NTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred eeccccccccCCCC-CcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 34566666666333 3566666676777765433222 23678999999999999 889999999999
Q ss_pred eEEEEECCCC-------eEEEEEcCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC
Q 003445 82 TIKLWDLEEA-------KIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP 153 (819)
Q Consensus 82 ~I~IWDl~s~-------~~i~~l~~h~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fsp 153 (819)
+|++||+.++ ..+..+.+|...|.+++|+|++ ++|++|+.|+.|+|||+++++.+..+.+|...|.+++|+|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 9999999765 3567889999999999999986 6899999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCC-eEEEEEeCCCCEEEEEE----CCCeEEEEECCCCe-EEEEeCCC-
Q 003445 154 DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ-IQCIDFHPHEFLLATGS----ADRTVKFWDLETFE-LIGSAGPE- 226 (819)
Q Consensus 154 dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~-I~sl~fspdg~~Lasgs----~Dg~I~iwDl~~~~-~l~~~~~~- 226 (819)
+|.+|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..+++++ .|+.|++||+++.. .+.....+
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~ 258 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ 258 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC
Confidence 9999999999999999999999999999888765 45678999887777654 47899999998754 33333323
Q ss_pred CCCeeEEEEeCCCCEEEEEE--CCCEEEEEecCCceeee
Q 003445 227 TSGVRCLTFNPDGRTLLCGL--HESLKVFSWEPIRCHDA 263 (819)
Q Consensus 227 ~~~I~sl~fspdg~~Lasgs--~d~I~Vwd~~~~~~~~~ 263 (819)
...+....|++++.+|++++ ++.|++|++...+....
T Consensus 259 ~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 259 SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 34566678899999998775 44699999988765544
No 62
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7e-25 Score=221.05 Aligned_cols=249 Identities=21% Similarity=0.399 Sum_probs=210.8
Q ss_pred ceEEEecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCC---CeEEEEE-cCCCCCeEEEEEecCCCEEEEEECCCc
Q 003445 50 NAILSLSGHTSGIDSVSFDSS-EVLVAAGAASGTIKLWDLEE---AKIVRTL-TGHRSNCISVDFHPFGEFFASGSLDTN 124 (819)
Q Consensus 50 ~~i~~l~~h~~~V~~l~fspd-g~~Lasgs~DG~I~IWDl~s---~~~i~~l-~~h~~~I~sl~fsp~g~~Lasgs~Dg~ 124 (819)
..+..+.+|.+.+..++|+|- |..|++++.|..|++|+... ..+...+ .+|+..|.+++|+|.|++|++++.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 345678899999999999998 89999999999999999985 2333334 369999999999999999999999999
Q ss_pred EEEEECCC--CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---eEEEEEecCCCCeEEEEEeCCCCE
Q 003445 125 LKIWDIRK--KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG---KLLHDFKCHEGQIQCIDFHPHEFL 199 (819)
Q Consensus 125 I~IwDi~t--~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~---~~i~~~~~h~~~I~sl~fspdg~~ 199 (819)
+.||.-.. .+++.++.+|...|.|++|+++|++|++++.|..|.||.+..+ +++..+..|...|..+.|||...+
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 99997653 4789999999999999999999999999999999999998754 567778899999999999999999
Q ss_pred EEEEECCCeEEEEECC---CCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeE
Q 003445 200 LATGSADRTVKFWDLE---TFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLN 275 (819)
Q Consensus 200 Lasgs~Dg~I~iwDl~---~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~ 275 (819)
|++++.|.+|++|+-. ...++.++.+|...|.+++|++.|..|++++++ .++||..-.. .-..+...++++.
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~v~ 240 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYDVP 240 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEeee
Confidence 9999999999999876 467899999999999999999999999999888 5999985421 1112223445555
Q ss_pred ecCCCEEEEEEcCCeEEEEEecCCceee
Q 003445 276 VHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 276 ~~dg~lLa~~~~Dg~V~IW~ld~~~~~p 303 (819)
+. +..|++++.|+.|+++.-..+-..|
T Consensus 241 W~-~~~IaS~ggD~~i~lf~~s~~~d~p 267 (312)
T KOG0645|consen 241 WD-NGVIASGGGDDAIRLFKESDSPDEP 267 (312)
T ss_pred ec-ccceEeccCCCEEEEEEecCCCCCc
Confidence 55 6799999999999999777443333
No 63
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.9e-25 Score=223.99 Aligned_cols=275 Identities=22% Similarity=0.362 Sum_probs=235.2
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEE--EecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEE
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL--SLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLW 86 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~--~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IW 86 (819)
+++++|...|.+++|+. ++..|++|+.|+++.+|+++...... ...+|.+.|..++|+| ...+|++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 67889999999999998 77789999999999999998775544 3458999999999988 45689999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003445 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (819)
Q Consensus 87 Dl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~ 166 (819)
|+..++++..+....+.+ .+.|+|+|+++++++.|..|.+.|.++.+.+...+ ....+..++|+-++.+++.....|+
T Consensus 93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCce
Confidence 999999999888665655 57899999999999999999999999988777765 4566888999988888888878899
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003445 167 VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (819)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs 246 (819)
|.|.....-+.+..++.|.....||.|+|+|++||+|+.|..+.+||++..-++..+..+.-+|+.+.|+.||++||+++
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-EEEEEecCCceeeeeeccccceeEeEecC-CCEEEEEEcC
Q 003445 247 HES-LKVFSWEPIRCHDAVDVGWSRLSDLNVHE-GKLLGCSYNQ 288 (819)
Q Consensus 247 ~d~-I~Vwd~~~~~~~~~~~~~~s~i~~l~~~d-g~lLa~~~~D 288 (819)
.|. |-|-+.+++.....+... ++...+.+|. ..+||-+..|
T Consensus 251 EDh~IDIA~vetGd~~~eI~~~-~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDRVWEIPCE-GPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccceEEeEecccCCeEEEeecc-CCceeEEecCCCceeeEEecC
Confidence 984 777777777655444333 2344555544 4566655543
No 64
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.1e-26 Score=243.41 Aligned_cols=277 Identities=25% Similarity=0.357 Sum_probs=237.6
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIV 94 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i 94 (819)
..+.|.+++|+|....-+|+.+. -.+.||+..+......+......|.++.|..||+++++|+..|.|++||+.+...+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 34689999999976665666654 45999999888888878888899999999999999999999999999998777788
Q ss_pred EEEcCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEEC
Q 003445 95 RTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDL 172 (819)
Q Consensus 95 ~~l~~h~~~I~sl~fsp~g~-~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fsp-dg~~L~sgs~Dg~I~IwDl 172 (819)
+.+.+|..++..+.|+|+++ .|++|+.|+.+++||+.+......+.+|++.|.|.+|+| .+..+++|+.||.|++||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 89999999999999999765 688889999999999999987668899999999999999 4568999999999999999
Q ss_pred CCC-eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC-CeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-C
Q 003445 173 TAG-KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET-FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-S 249 (819)
Q Consensus 173 ~t~-~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~-~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~ 249 (819)
+.. ..+.++. |..+|-.+.+-|.|..+|+++ ...|++||+.+ ++.+..+..|...|+|+.+..++..|++|+-| .
T Consensus 184 R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~ 261 (487)
T KOG0310|consen 184 RSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH 261 (487)
T ss_pred ccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc
Confidence 987 6677776 899999999999999999987 46799999995 45555566699999999999999999988766 6
Q ss_pred EEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEE
Q 003445 250 LKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVW 294 (819)
Q Consensus 250 I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW 294 (819)
++||+....+....+......+..-..++++.++.|..+|.+.+=
T Consensus 262 VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 262 VKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred eEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence 999998888877777666665655566889999999999877554
No 65
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.1e-24 Score=220.33 Aligned_cols=290 Identities=19% Similarity=0.311 Sum_probs=241.0
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEE
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA--SGTIKLWD 87 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~--DG~I~IWD 87 (819)
+.|..-.+.|+++.|+. +|.+|++++.|..++|||..+++.+.++..+...|..++|......++.++. |.+|+..+
T Consensus 8 k~f~~~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred cccccCCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 35555678999999998 7778889999999999999999999999999999999999776666666666 88999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003445 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTV 167 (819)
Q Consensus 88 l~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I 167 (819)
+.+.+.++.+.||...|.+++.+|-++.|++++.|++|++||++..++...+..... ..++|.|.|-++|++.....|
T Consensus 87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeE
Confidence 999999999999999999999999999999999999999999998888877765444 357899999999999888899
Q ss_pred EEEECCCC--eEEEEEec---CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCC---eeEEEEeCCC
Q 003445 168 KLWDLTAG--KLLHDFKC---HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSG---VRCLTFNPDG 239 (819)
Q Consensus 168 ~IwDl~t~--~~i~~~~~---h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~---I~sl~fspdg 239 (819)
++||++.- .+...|.. .....+.|.|+|||++|+.+...+.+++.|.-+|..+..+..+... ....+|+||+
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds 244 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS 244 (311)
T ss_pred EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence 99999863 34444443 3567899999999999999999999999999999988887665432 2678899999
Q ss_pred CEEEEEECC-CEEEEEecCCceeeeeec-cccceeEeEecCCCEEEEEEcCCeEEEEEecCCceee
Q 003445 240 RTLLCGLHE-SLKVFSWEPIRCHDAVDV-GWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 240 ~~Lasgs~d-~I~Vwd~~~~~~~~~~~~-~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~p 303 (819)
+++++|++| .|.+|+.+++.....+.. .......+.+ +-++....+.+..+-+|-.+..+..+
T Consensus 245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~f-nP~~~mf~sa~s~l~fw~p~~~~~~~ 309 (311)
T KOG1446|consen 245 KFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRF-NPRYAMFVSASSNLVFWLPDEDALPA 309 (311)
T ss_pred cEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCcccccc-CCceeeeeecCceEEEEeccccccCC
Confidence 999999886 699999999887777665 3444555553 33455555667789999877655443
No 66
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=2.3e-25 Score=256.64 Aligned_cols=250 Identities=27% Similarity=0.489 Sum_probs=224.2
Q ss_pred cceEEE-EeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003445 6 AYKLQE-FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIK 84 (819)
Q Consensus 6 ~~kl~~-~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (819)
.+.+.. +.+|.+.|++++|.. ++.+|++|+.|.++++||+.++++...+.+|.+.|.++... ..++++|+.|.+|+
T Consensus 238 ~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVk 314 (537)
T KOG0274|consen 238 GYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVK 314 (537)
T ss_pred ceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEE
Confidence 344555 999999999999987 78899999999999999999999999999999999999874 44778899999999
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003445 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (819)
Q Consensus 85 IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~D 164 (819)
+|+++++..+..+.+|..+|.++..+ +.++++|+.||+|++||+.+++++.++.+|...|.++.+.+. ..+++|+.|
T Consensus 315 VW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D 391 (537)
T KOG0274|consen 315 VWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLD 391 (537)
T ss_pred EEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeec
Confidence 99999999999999999999999998 889999999999999999999999999999999999988755 899999999
Q ss_pred CeEEEEECCCC-eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC-CCCCeeEEEEeCCCCEE
Q 003445 165 NTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP-ETSGVRCLTFNPDGRTL 242 (819)
Q Consensus 165 g~I~IwDl~t~-~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~-~~~~I~sl~fspdg~~L 242 (819)
+.|++||+++. +++..+.+|..-+..+.+ .+++|++++.|++|++||...++++..+.. +...|..+++. +...|
T Consensus 392 ~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il 468 (537)
T KOG0274|consen 392 TTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KEEIL 468 (537)
T ss_pred cceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-cceEE
Confidence 99999999999 999999999988866654 577999999999999999999999999988 67888888887 34455
Q ss_pred EEEECCCEEEEEecCCceeeee
Q 003445 243 LCGLHESLKVFSWEPIRCHDAV 264 (819)
Q Consensus 243 asgs~d~I~Vwd~~~~~~~~~~ 264 (819)
.++.++.+++||+.++.+...+
T Consensus 469 ~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 469 CSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EEecCCeeEEEecccCchhhhh
Confidence 5555668999999998876544
No 67
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.6e-26 Score=243.96 Aligned_cols=279 Identities=27% Similarity=0.428 Sum_probs=246.6
Q ss_pred EEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc--eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003445 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN--AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (819)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~--~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (819)
.+..|.+.|..+.|-+ +...|++|+.|..|++|++...+ .+.++.|..++|+.+.|.++++++++++.|+.+++|++
T Consensus 170 ~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hhhccccccceeEEcc-CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 4668999999999998 55579999999999999986555 67788888899999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003445 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVK 168 (819)
Q Consensus 89 ~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~ 168 (819)
...+...++.+|.+.|+++.|......+++|+.|.+|++||+....|..++- ....+..|+.+ +..+++|..|+.|+
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVR 325 (459)
T ss_pred cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceE
Confidence 9999999999999999999998776679999999999999999998888765 34456777776 56788999999999
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC----CCCeeEEEEeCCCCEEEE
Q 003445 169 LWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE----TSGVRCLTFNPDGRTLLC 244 (819)
Q Consensus 169 IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~----~~~I~sl~fspdg~~Las 244 (819)
+||+++..+......+ +.|+++..++++..|.+++.|.++.++|+++.+....+... ....+.+.|||++.|+++
T Consensus 326 fwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaA 404 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAA 404 (459)
T ss_pred EEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeee
Confidence 9999999999988865 59999999999999999999999999999999888776543 345788999999999999
Q ss_pred EECC-CEEEEEecCCceeeeeeccccc--eeEeEe-cCCCEEEEEEcCCeEEEE
Q 003445 245 GLHE-SLKVFSWEPIRCHDAVDVGWSR--LSDLNV-HEGKLLGCSYNQSCVGVW 294 (819)
Q Consensus 245 gs~d-~I~Vwd~~~~~~~~~~~~~~s~--i~~l~~-~dg~lLa~~~~Dg~V~IW 294 (819)
|+.+ .++||+..++++...+....+. +..+.+ +.|..|++++.++.+.+|
T Consensus 405 GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 405 GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 9776 6999999999999888776665 777776 688999999999999999
No 68
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=6.6e-27 Score=260.57 Aligned_cols=353 Identities=28% Similarity=0.450 Sum_probs=292.3
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEE
Q 003445 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISV 107 (819)
Q Consensus 28 ~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl 107 (819)
+..+++..-.+-.+++|+.. .+..|...|.|+..-..++.+++|+.|-.+.+|.+.....+..+.+|..+|.++
T Consensus 3 ~~~~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl 76 (825)
T KOG0267|consen 3 GMEFLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESL 76 (825)
T ss_pred cccccceeeeeeccccccch------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceee
Confidence 33445555566677888854 244688899999987788999999999999999998877777899999999999
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCC
Q 003445 108 DFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ 187 (819)
Q Consensus 108 ~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~ 187 (819)
.|++...+|++|+.+|+|++||++..+.++++.+|...+..+.|+|.+.+++.|+.|+.+++||++...+.+.+++|...
T Consensus 77 ~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 77 TFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred ecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeec
Q 003445 188 IQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDV 266 (819)
Q Consensus 188 I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~ 266 (819)
+.++.|+|+|+|++.|++|.+++|||+..|+.+..|..|.+.+..+.|+|..-+++.|+.+ .+++||+++.+.+.....
T Consensus 157 v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~ 236 (825)
T KOG0267|consen 157 VDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP 236 (825)
T ss_pred eEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCC
Confidence 9999999999999999999999999999999999999999999999999999889988776 699999998877766555
Q ss_pred cccceeEeEe-cCCCEEEEEEcCCeE------EEEEecCCceeeeeecccceeccccccccCCCCCcccccccccccccC
Q 003445 267 GWSRLSDLNV-HEGKLLGCSYNQSCV------GVWVVDISRIEPYTIGSVTRVNGLSESKSSASGNLSVLNENSAKASLG 339 (819)
Q Consensus 267 ~~s~i~~l~~-~dg~lLa~~~~Dg~V------~IW~ld~~~~~p~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (819)
....+....+ ++++.+.+|-....- .-+.....+.+|...+...+.+.|.+.......+...+++......++
T Consensus 237 ~~~~v~~~~fn~~~~~~~~G~q~sl~~~~~a~ah~~~~~~~~Ep~~~~~~vqs~~~~ek~v~v~~d~~~ln~~~s~~~~~ 316 (825)
T KOG0267|consen 237 ETDGVRSLAFNPDGKIVLSGEQISLSESRTASAHVRKTLARWEPEMDGAVVQSNSHKEKVVAVGRDPQDLNAFSSKVNLS 316 (825)
T ss_pred ccCCceeeeecCCceeeecCchhhhhhhhcccceeeccccccccccccceeeecCCcccccccccCcccccccccccccc
Confidence 5555666555 677888777655322 112233445666677777777777777666555666666677777777
Q ss_pred CCcccCCCccccccccccCccccc-CCCCcccccccccccccccCCCCc
Q 003445 340 KLSVSQNSDPLVKETKSLGRLSVS-QNSDPLLKETKTLGRLSVSQNSEP 387 (819)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 387 (819)
++...+.. .++.+++.+|+++++ |..|+..+++++.+.++..++++.
T Consensus 317 kl~~~~~~-p~l~~t~~l~rl~~S~q~dep~~~~~k~~~~s~t~~~s~~ 364 (825)
T KOG0267|consen 317 KLEDSTYV-PLLKETKSLGRLSVSYQTDEPLDKSTKPHRRSSTSQNSDR 364 (825)
T ss_pred cccccccc-ceeccccchhccccccccCCCcccCCCCcccccccccccc
Confidence 77777766 788888889999987 888888888877666666666544
No 69
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=6.1e-25 Score=255.91 Aligned_cols=291 Identities=20% Similarity=0.364 Sum_probs=245.5
Q ss_pred Eecc-CCCEEEEEEeeCCCcEEEEEe--CCCeEEEEECCC------------CceEEEecCCCCCeEEEEEcCCCCEEEE
Q 003445 12 FVAH-SSTVNCLKIGRKSSRVLVTGG--EDHKVNLWAIGK------------PNAILSLSGHTSGIDSVSFDSSEVLVAA 76 (819)
Q Consensus 12 ~~~H-~~~V~~lafsp~~~~~Latgs--~Dg~V~IWdl~~------------~~~i~~l~~h~~~V~~l~fspdg~~Las 76 (819)
+.+| ...|.+++.+| ++..++||+ .||.+.||+... .+.+.+...|.+.|+|+.|++||++||+
T Consensus 8 wv~H~~~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred ccccCCeeEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee
Confidence 3444 45799999999 677899999 899999998631 3445566789999999999999999999
Q ss_pred EECCCeEEEEECCC------------------CeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE
Q 003445 77 GAASGTIKLWDLEE------------------AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT 138 (819)
Q Consensus 77 gs~DG~I~IWDl~s------------------~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~ 138 (819)
|+.|+.|.||+... .+.+..+.+|...|..++|+|++.+|++++.|++|.||+.++.+.+.+
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence 99999999998762 246778899999999999999999999999999999999999999999
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC------CCeEEEEEeCCCCEEEEEEC----CCe
Q 003445 139 YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE------GQIQCIDFHPHEFLLATGSA----DRT 208 (819)
Q Consensus 139 ~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~------~~I~sl~fspdg~~Lasgs~----Dg~ 208 (819)
+.+|.+.|..+.|.|-|+||++-++|++|+||++.+....+.+..+- .-...+.|+|||.+|++... -.+
T Consensus 167 l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~ 246 (942)
T KOG0973|consen 167 LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKST 246 (942)
T ss_pred eecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcce
Confidence 99999999999999999999999999999999988766666665432 34788999999999998753 347
Q ss_pred EEEEECCCCeEEEEeCCCCCCeeEEEEeCC-----CC------------EEEEEECC-CEEEEEecCCceeeee-ecccc
Q 003445 209 VKFWDLETFELIGSAGPETSGVRCLTFNPD-----GR------------TLLCGLHE-SLKVFSWEPIRCHDAV-DVGWS 269 (819)
Q Consensus 209 I~iwDl~~~~~l~~~~~~~~~I~sl~fspd-----g~------------~Lasgs~d-~I~Vwd~~~~~~~~~~-~~~~s 269 (819)
+.|.+-.+++.-..+-+|..++.++.|+|. .+ ++|+|+.| +|.||.....+.+-++ ..-..
T Consensus 247 ~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~ 326 (942)
T KOG0973|consen 247 IAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK 326 (942)
T ss_pred eEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC
Confidence 999999999988899999999999999982 11 56677776 6999998777765443 34445
Q ss_pred ceeEeEe-cCCCEEEEEEcCCeEEEEEecCCceee
Q 003445 270 RLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 270 ~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~~~p 303 (819)
.+.++.+ +||..|.+++.||+|.+..++-.++..
T Consensus 327 SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~ 361 (942)
T KOG0973|consen 327 SIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGV 361 (942)
T ss_pred ceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCc
Confidence 6677777 799999999999999999998777653
No 70
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.3e-26 Score=239.30 Aligned_cols=284 Identities=17% Similarity=0.353 Sum_probs=238.7
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (819)
+..+.||.+.|.|++=+|..-..+++|+.||.|+|||+...+++..+.+|.+.|..|++.. ..+++++.|.+|+.|-+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 4467899999999999995547799999999999999999999999999999999999987 56778899999999998
Q ss_pred CCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeE
Q 003445 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDG-RWVVSGGEDNTV 167 (819)
Q Consensus 89 ~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg-~~L~sgs~Dg~I 167 (819)
+. .+++++.+ ...+..++-+..+..|++++. .|.|||.+...++..+......|.++.|+|-. ..|++++.|+.|
T Consensus 137 ~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 137 DG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred cC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 75 46666663 455777777777788888874 48999999999999998888889999999954 466677799999
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe-EEEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003445 168 KLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE-LIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (819)
Q Consensus 168 ~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~-~l~~~~~~~~~I~sl~fspdg~~Lasgs 246 (819)
.+||++++.+++.+. ....-+.|+|+|.+..+++|++|..++.||++..+ ++.....|.+.|.++.|+|.|+-+++|+
T Consensus 213 vLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 213 VLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS 291 (433)
T ss_pred EEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence 999999998887765 34556889999999999999999999999998754 6777889999999999999999999998
Q ss_pred CC-CEEEEEecCCceeeeeeccc-cceeEeE-ecCCCEEEEEEcCCeEEEEEecCC
Q 003445 247 HE-SLKVFSWEPIRCHDAVDVGW-SRLSDLN-VHEGKLLGCSYNQSCVGVWVVDIS 299 (819)
Q Consensus 247 ~d-~I~Vwd~~~~~~~~~~~~~~-s~i~~l~-~~dg~lLa~~~~Dg~V~IW~ld~~ 299 (819)
.| +|+||..+.+...+++.... ..+.++. .+|.+++++|++|+.|++|.....
T Consensus 292 yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 292 YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred ccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 77 79999998877766653221 2233333 389999999999999999976543
No 71
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.4e-26 Score=225.67 Aligned_cols=240 Identities=25% Similarity=0.404 Sum_probs=209.2
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC-CCceEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCe
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG-KPNAILSLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEEAK 92 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~-~~~~i~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~s~~ 92 (819)
-.+.+..++|++....++++++.||.++|||.. ...++..++.|...|.++.|++ +++.+++++.||+|++|+....+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 457899999999889999999999999999974 3467888999999999999988 55678888999999999999999
Q ss_pred EEEEEcCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEE
Q 003445 93 IVRTLTGHRSNCISVDFHPF-GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLW 170 (819)
Q Consensus 93 ~i~~l~~h~~~I~sl~fsp~-g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fsp-dg~~L~sgs~Dg~I~Iw 170 (819)
.++++.+|...|....|+|. .+.|++++.||++++||++.......+..|...|.|+.|+. +.+.+++|+.|+.|++|
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 99999999999999999994 67899999999999999997665556899999999999998 66789999999999999
Q ss_pred ECCCC-eEEEEEecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCC-eEEEEeCCCCCCeeEEEEeCC-CCEEEEEE
Q 003445 171 DLTAG-KLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETF-ELIGSAGPETSGVRCLTFNPD-GRTLLCGL 246 (819)
Q Consensus 171 Dl~t~-~~i~~~~~h~~~I~sl~fspd-g~~Lasgs~Dg~I~iwDl~~~-~~l~~~~~~~~~I~sl~fspd-g~~Lasgs 246 (819)
|++.- .++.++.+|.-.|..+.|+|. ..+||+++.|-+++|||.... ..+.+...|...+..+.|++- +.+++..+
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecc
Confidence 99974 467888999999999999997 569999999999999999844 456667788888999999874 55677554
Q ss_pred CC-CEEEEE
Q 003445 247 HE-SLKVFS 254 (819)
Q Consensus 247 ~d-~I~Vwd 254 (819)
-| .+.||+
T Consensus 299 WDe~l~Vw~ 307 (311)
T KOG0277|consen 299 WDELLYVWN 307 (311)
T ss_pred cccceeeec
Confidence 44 688886
No 72
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=9.8e-24 Score=243.95 Aligned_cols=225 Identities=17% Similarity=0.333 Sum_probs=186.2
Q ss_pred EeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCe--------EEEEEcCCCCCeE
Q 003445 35 GGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSS-EVLVAAGAASGTIKLWDLEEAK--------IVRTLTGHRSNCI 105 (819)
Q Consensus 35 gs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspd-g~~Lasgs~DG~I~IWDl~s~~--------~i~~l~~h~~~I~ 105 (819)
|+.++.|.+|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||+|++||+.++. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566889999999888888899999999999999996 7899999999999999997542 3456788999999
Q ss_pred EEEEecCCCE-EEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecC
Q 003445 106 SVDFHPFGEF-FASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184 (819)
Q Consensus 106 sl~fsp~g~~-Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h 184 (819)
+++|+|++.. |++++.|+.|+|||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 9999999876 5789999999999999998887776 6678999999999999999999999999999999999999999
Q ss_pred CCCeEE-----EEEeCCCCEEEEEECCC----eEEEEECCC-CeEEEEeC--CCCCCeeEEEEeCCCCEEEEEECC-CEE
Q 003445 185 EGQIQC-----IDFHPHEFLLATGSADR----TVKFWDLET-FELIGSAG--PETSGVRCLTFNPDGRTLLCGLHE-SLK 251 (819)
Q Consensus 185 ~~~I~s-----l~fspdg~~Lasgs~Dg----~I~iwDl~~-~~~l~~~~--~~~~~I~sl~fspdg~~Lasgs~d-~I~ 251 (819)
.+.+.+ ..|++++.+|++++.|+ +|+|||+++ .+++..+. .+.+.+......++|.++++|..| .|+
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence 876543 33458888999988774 799999995 55555443 333334444445568888888666 699
Q ss_pred EEEecCCce
Q 003445 252 VFSWEPIRC 260 (819)
Q Consensus 252 Vwd~~~~~~ 260 (819)
+|++.....
T Consensus 289 ~~e~~~~~~ 297 (568)
T PTZ00420 289 YYQHSLGSI 297 (568)
T ss_pred EEEccCCcE
Confidence 999977643
No 73
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=3.3e-25 Score=226.28 Aligned_cols=289 Identities=18% Similarity=0.360 Sum_probs=234.9
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC------------------CceEEEecCCCCCeEEEEE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK------------------PNAILSLSGHTSGIDSVSF 67 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~------------------~~~i~~l~~h~~~V~~l~f 67 (819)
.+...-+..|+.++.|.+|++ +|.+++||+.|..|+|.|++. .-.+.++..|...|+++.|
T Consensus 102 ~yEt~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 102 EYETKYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF 180 (430)
T ss_pred ccceEEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee
Confidence 455667888999999999999 778999999999999999851 1346788899999999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeEEEEEc--CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE---ecC
Q 003445 68 DSSEVLVAAGAASGTIKLWDLEEAKIVRTLT--GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY---KGH 142 (819)
Q Consensus 68 spdg~~Lasgs~DG~I~IWDl~s~~~i~~l~--~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~---~~h 142 (819)
+|....|++|+.|++|++||+......+.++ ....+|.++.|+|.|.+|++|..-.++++||+.+-+|.... ..|
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccc
Confidence 9999999999999999999997543332222 24568999999999999999999999999999998887654 368
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCC-CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEE
Q 003445 143 TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK-CHE-GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI 220 (819)
Q Consensus 143 ~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~-~h~-~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l 220 (819)
.+.|+++.+++.|++.++|+.||.|++||--+++++.++. .|. ..|.+..|..+|+++++.+.|..+++|.+.++..+
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 8999999999999999999999999999999999998886 354 46999999999999999999999999999999999
Q ss_pred EEeCCCC-----CCeeEEEEeCCCCEEEEEECCC--EEEEEecCCceeeeeeccccc-ee-EeEecCCCEEEEEEcCCeE
Q 003445 221 GSAGPET-----SGVRCLTFNPDGRTLLCGLHES--LKVFSWEPIRCHDAVDVGWSR-LS-DLNVHEGKLLGCSYNQSCV 291 (819)
Q Consensus 221 ~~~~~~~-----~~I~sl~fspdg~~Lasgs~d~--I~Vwd~~~~~~~~~~~~~~s~-i~-~l~~~dg~lLa~~~~Dg~V 291 (819)
..+.+.. ..-+...|+....|++.-...+ +.-||-.+......+..+... +. ....+.+..+.+|+.|-..
T Consensus 341 ~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ra 420 (430)
T KOG0640|consen 341 KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRA 420 (430)
T ss_pred EEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccccee
Confidence 8875541 1224566777777877665443 555665555444444444332 22 2334678899999999999
Q ss_pred EEEE
Q 003445 292 GVWV 295 (819)
Q Consensus 292 ~IW~ 295 (819)
++|-
T Consensus 421 RFWy 424 (430)
T KOG0640|consen 421 RFWY 424 (430)
T ss_pred eeee
Confidence 9995
No 74
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=4.1e-26 Score=245.25 Aligned_cols=253 Identities=24% Similarity=0.461 Sum_probs=218.9
Q ss_pred ceEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC-CeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 003445 50 NAILSLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEE-AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKI 127 (819)
Q Consensus 50 ~~i~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~s-~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~I 127 (819)
+.++.+.+|+..|.++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..|++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45678899999999999999 899999999999999999976 8999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC
Q 003445 128 WDIRKKGCIHTYKGHTRGVNAIRFTPDG-RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD 206 (819)
Q Consensus 128 wDi~t~~~i~~~~~h~~~I~sl~fspdg-~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~D 206 (819)
||+++|+++..+.. ...++|+.|+|++ +.+++|+.|+.|+.||+++++.++++..|-+.|..+.|-++|..+++.+.|
T Consensus 285 wDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 285 WDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred eccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 99999999999973 5668999999988 899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEe-CCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCc---eeeeeeccc---cceeEeEecC
Q 003445 207 RTVKFWDLETFELIGSA-GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIR---CHDAVDVGW---SRLSDLNVHE 278 (819)
Q Consensus 207 g~I~iwDl~~~~~l~~~-~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~---~~~~~~~~~---s~i~~l~~~d 278 (819)
+.++||+.+..-.+..+ ..+.....++..+|++.++++-+.+ .|.+|.....- ....+..++ ..+..-+.+|
T Consensus 364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence 99999999987766543 3445567899999999999987766 57777754321 122333333 3344445599
Q ss_pred CCEEEEEEcCCeEEEEEecCCceee
Q 003445 279 GKLLGCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 279 g~lLa~~~~Dg~V~IW~ld~~~~~p 303 (819)
|.+|++|..||.+.+||..+.++.-
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~kl~~ 468 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTTKLVS 468 (503)
T ss_pred CCeEEeecCCccEEEeechhhhhhh
Confidence 9999999999999999999887654
No 75
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=7.1e-24 Score=245.13 Aligned_cols=231 Identities=18% Similarity=0.330 Sum_probs=187.5
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc--------eEEEecCCCCCeEEEEEcCCCCE-EEEE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN--------AILSLSGHTSGIDSVSFDSSEVL-VAAG 77 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~--------~i~~l~~h~~~V~~l~fspdg~~-Lasg 77 (819)
..+..+.+|.+.|.+++|+|+++.+|++|+.||.|+|||+.++. .+..+.+|...|.+++|+|++.. |+++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 45678999999999999999768899999999999999997532 34567899999999999998875 5788
Q ss_pred ECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEE-----EEEc
Q 003445 78 AASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNA-----IRFT 152 (819)
Q Consensus 78 s~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~s-----l~fs 152 (819)
+.||+|++||+.+++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+.+|.+.+.+ ..|+
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs 223 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLG 223 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEc
Confidence 999999999999998877776 6678999999999999999999999999999999999999999876543 3355
Q ss_pred CCCCEEEEEECCC----eEEEEECCC-CeEEEEEec--CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeC-
Q 003445 153 PDGRWVVSGGEDN----TVKLWDLTA-GKLLHDFKC--HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG- 224 (819)
Q Consensus 153 pdg~~L~sgs~Dg----~I~IwDl~t-~~~i~~~~~--h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~- 224 (819)
+++.+|++++.|+ .|+|||++. ++++..+.. +.+.+......+++.++++|+.|+.|++|++..+.. ..+.
T Consensus 224 ~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~ 302 (568)
T PTZ00420 224 GDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNE 302 (568)
T ss_pred CCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE-Eeecc
Confidence 8889999988774 799999995 556655543 233344444455688999999999999999987643 2221
Q ss_pred -CCCCCeeEEEEeCCC
Q 003445 225 -PETSGVRCLTFNPDG 239 (819)
Q Consensus 225 -~~~~~I~sl~fspdg 239 (819)
.+..++.+++|.|+.
T Consensus 303 ~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 303 YKSCSPFRSFGFLPKQ 318 (568)
T ss_pred cccCCCccceEEcccc
Confidence 245677888988863
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.3e-25 Score=236.06 Aligned_cols=235 Identities=25% Similarity=0.494 Sum_probs=208.0
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeE
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSE-VLVAAGAASGTIKLWDLEEAKI 93 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg-~~Lasgs~DG~I~IWDl~s~~~ 93 (819)
....|.++.|-. +|++|++|+..|.|+|||..+...+..+.+|+.+|..+.|+|++ ..+++|+.|+.+++||+.++..
T Consensus 67 Fk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v 145 (487)
T KOG0310|consen 67 FKDVVYSVDFRS-DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV 145 (487)
T ss_pred hccceeEEEeec-CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE
Confidence 457899999987 88999999999999999977767788899999999999999954 5788899999999999999998
Q ss_pred EEEEcCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 94 VRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (819)
Q Consensus 94 i~~l~~h~~~I~sl~fsp~g~-~Lasgs~Dg~I~IwDi~t~-~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwD 171 (819)
...+.+|.+.|.|.+|+|... .+++|+.||.|++||++.. ..+..+. |..+|..+.|-|.|..|++++ ...|++||
T Consensus 146 ~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWD 223 (487)
T KOG0310|consen 146 QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVWD 223 (487)
T ss_pred EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEEE
Confidence 778999999999999999765 7999999999999999987 5666665 999999999999999999885 67899999
Q ss_pred CCCC-eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCE
Q 003445 172 LTAG-KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESL 250 (819)
Q Consensus 172 l~t~-~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I 250 (819)
+.+| +.+..+..|...|+|+++..++..|++|+-|+.|++||+.+.+.++.+.- .++|.+++.+|+++.++.|..+++
T Consensus 224 l~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-~~pvLsiavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 224 LTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-PGPVLSIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred ecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-ccceeeEEecCCCceEEEecccce
Confidence 9965 45555555999999999999999999999999999999999999988864 488999999999999999988875
Q ss_pred EEE
Q 003445 251 KVF 253 (819)
Q Consensus 251 ~Vw 253 (819)
..+
T Consensus 303 v~~ 305 (487)
T KOG0310|consen 303 VSI 305 (487)
T ss_pred eee
Confidence 443
No 77
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=8.9e-26 Score=224.72 Aligned_cols=250 Identities=20% Similarity=0.391 Sum_probs=226.7
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
-=+-+|.+|++.|+...+.. +....++++.|-+-+|||.-++..++.+. |..-|..++|+.|.++|++|+.+..++||
T Consensus 50 dwigtfeghkgavw~~~l~~-na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvf 127 (334)
T KOG0278|consen 50 DWIGTFEGHKGAVWSATLNK-NATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVF 127 (334)
T ss_pred CcEEeeeccCcceeeeecCc-hhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhh
Confidence 34678999999999999987 66678899999999999999999999988 89999999999999999999999999999
Q ss_pred ECCCCe-EEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003445 87 DLEEAK-IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (819)
Q Consensus 87 Dl~s~~-~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg 165 (819)
|++..+ +...+.+|.+.|..+.|+...+.|++.+.|++|++||.+++..++++. ...+|+++.++++|++|.++ ..+
T Consensus 128 dln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gs 205 (334)
T KOG0278|consen 128 DLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGS 205 (334)
T ss_pred hccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCc
Confidence 998654 567788999999999999999999999999999999999999999987 57789999999999977665 578
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe-CCCCCCeeEEEEeCCCCEEEE
Q 003445 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA-GPETSGVRCLTFNPDGRTLLC 244 (819)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~-~~~~~~I~sl~fspdg~~Las 244 (819)
.|.+||..+-..++.++ ....|.+..++|+..++++|++|..++.||..+++.+..+ ++|.++|.|+.|+|||...++
T Consensus 206 sV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAs 284 (334)
T KOG0278|consen 206 SVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYAS 284 (334)
T ss_pred eeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeec
Confidence 89999999998888887 4677999999999999999999999999999999999886 899999999999999999999
Q ss_pred EECC-CEEEEEecCCcee
Q 003445 245 GLHE-SLKVFSWEPIRCH 261 (819)
Q Consensus 245 gs~d-~I~Vwd~~~~~~~ 261 (819)
|+.| +|++|...+.+..
T Consensus 285 GSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 285 GSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred cCCCceEEEEEecCCCch
Confidence 9987 5999998876654
No 78
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=7.1e-25 Score=245.14 Aligned_cols=247 Identities=24% Similarity=0.455 Sum_probs=224.8
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
..++++. .+-+.|..|.| +++++++|...|.+.+||+.....+.++.+|.+.|+.++.+||+..+++|+.|.+|++|
T Consensus 405 kciRTi~--~~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfW 481 (888)
T KOG0306|consen 405 KCIRTIT--CGYILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFW 481 (888)
T ss_pred ceeEEec--cccEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEE
Confidence 3444444 34788999999 88999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCC-----CeEE--------EEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC
Q 003445 87 DLEE-----AKIV--------RTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP 153 (819)
Q Consensus 87 Dl~s-----~~~i--------~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fsp 153 (819)
|..- +... +++. ..+.|.|+.++|||++|+++-.|.++++|-+++.+....+-+|.-+|.|+..+|
T Consensus 482 df~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~ 560 (888)
T KOG0306|consen 482 DFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP 560 (888)
T ss_pred eEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC
Confidence 9741 2111 1222 456899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEE
Q 003445 154 DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCL 233 (819)
Q Consensus 154 dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl 233 (819)
|++.+++|+.|..|++|-+.-|.|-+.+.+|...|.++.|-|....+.+++.|+.|+-||-..++.+..+.+|...|+|+
T Consensus 561 DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cL 640 (888)
T KOG0306|consen 561 DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCL 640 (888)
T ss_pred CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCEEEEEECC-CEEEEEecC
Q 003445 234 TFNPDGRTLLCGLHE-SLKVFSWEP 257 (819)
Q Consensus 234 ~fspdg~~Lasgs~d-~I~Vwd~~~ 257 (819)
+.+|+|.++++++.| +|++|.-..
T Consensus 641 av~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 641 AVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEcCCCCeEEeccCCceeEeeeccC
Confidence 999999999999886 799997543
No 79
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=8.3e-25 Score=223.57 Aligned_cols=290 Identities=20% Similarity=0.364 Sum_probs=244.2
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
.+++|.||.+.|+.++... +..++.+++.|.+-.||.++++.++..+.||.+.|++++|++.+.++++++.|++.+||.
T Consensus 140 lvre~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred ehhhhcccccceeeehhhc-CCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 3568899999999999886 777999999999999999999999999999999999999999999999999999999996
Q ss_pred C------CC------------------------------C----eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 003445 88 L------EE------------------------------A----KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKI 127 (819)
Q Consensus 88 l------~s------------------------------~----~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~I 127 (819)
. .. + .++..+.+|...|.+..|-..|+.+++++.|.+..+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 2 00 0 134567899999999999999999999999999999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEEEecCCCCeEEEEEeCCCCEEEEEECC
Q 003445 128 WDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPHEFLLATGSAD 206 (819)
Q Consensus 128 wDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~-~~i~~~~~h~~~I~sl~fspdg~~Lasgs~D 206 (819)
||++++..+..+.+|....+.++-+|..+++++.+.|.+.++||++.. ..+..|.+|...|+++.|.-+. .+++|+.|
T Consensus 299 wDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDD 377 (481)
T KOG0300|consen 299 WDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDD 377 (481)
T ss_pred eeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCC
Confidence 999999999999999999999999999999999999999999999853 4567789999999999998764 68899999
Q ss_pred CeEEEEECCCCe-EEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeee----eccccceeEeEecCC-
Q 003445 207 RTVKFWDLETFE-LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV----DVGWSRLSDLNVHEG- 279 (819)
Q Consensus 207 g~I~iwDl~~~~-~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~----~~~~s~i~~l~~~dg- 279 (819)
.+|++||+++.. ++.+++. ..+++.++.+..+.+++.-.++ .+++||++..+....- ..+..-+.+..+.+.
T Consensus 378 rTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eeh 456 (481)
T KOG0300|consen 378 RTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEH 456 (481)
T ss_pred ceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccC
Confidence 999999998754 4555554 4778999999888898888776 5999999876654332 223333445555333
Q ss_pred --CEEEEEEcCCeEEEEEecCCc
Q 003445 280 --KLLGCSYNQSCVGVWVVDISR 300 (819)
Q Consensus 280 --~lLa~~~~Dg~V~IW~ld~~~ 300 (819)
--|++|+-|..+.-|.+.+..
T Consensus 457 p~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 457 PACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred cccccccccccceeeeeEecccC
Confidence 345567778899999987653
No 80
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.4e-24 Score=242.20 Aligned_cols=240 Identities=23% Similarity=0.445 Sum_probs=217.1
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecC-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSG-HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI 93 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~-h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~ 93 (819)
+.+.|+++.|++ ++.+|++|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.+|.|..+|+...+.
T Consensus 216 ~~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~ 292 (484)
T KOG0305|consen 216 GEELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH 292 (484)
T ss_pred CCCceEEEEECC-CCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh
Confidence 378999999999 778999999999999999999999999998 99999999998 67899999999999999998765
Q ss_pred EEE-EcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEE--CCCeEEE
Q 003445 94 VRT-LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVVSGG--EDNTVKL 169 (819)
Q Consensus 94 i~~-l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fsp-dg~~L~sgs--~Dg~I~I 169 (819)
... +.+|...|+.+.|++++.+||+|+.|+.+.|||.....++..+..|...|.+++|+| ....||+|+ .|++|++
T Consensus 293 ~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~f 372 (484)
T KOG0305|consen 293 VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKF 372 (484)
T ss_pred hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence 444 889999999999999999999999999999999999999999999999999999999 556788765 6899999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE--CCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC
Q 003445 170 WDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS--ADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (819)
Q Consensus 170 wDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs--~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (819)
||..+++.+.... ..+.|.++.|++..+-|+++. .++.|.||++.+.+.+..+.+|...|..++++|||..+++|..
T Consensus 373 wn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 373 WNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAA 451 (484)
T ss_pred EEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecc
Confidence 9999999998877 467899999999987666643 5678999999999999999999999999999999999998866
Q ss_pred C-CEEEEEecCC
Q 003445 248 E-SLKVFSWEPI 258 (819)
Q Consensus 248 d-~I~Vwd~~~~ 258 (819)
| ++++|++-..
T Consensus 452 DETlrfw~~f~~ 463 (484)
T KOG0305|consen 452 DETLRFWNLFDE 463 (484)
T ss_pred cCcEEeccccCC
Confidence 6 7999987553
No 81
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=1.9e-24 Score=233.16 Aligned_cols=284 Identities=21% Similarity=0.325 Sum_probs=216.1
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC----ceEEEec-CCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----NAILSLS-GHTSGIDSVSFDSSEVLVAAGAASGTIK 84 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~----~~i~~l~-~h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (819)
..|++|+..|.++++.| .|-.|++|+.|..|++||+... +....+. .....|+.+.|++.+..|++.+.....+
T Consensus 161 i~l~hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred EeccCCceEEEEeeecC-CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 35788999999999999 6667999999999999998543 2223332 3445799999999999998888899999
Q ss_pred EEECCCCeEEEE------------EcCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCe-EEEEEe-----cCCCC
Q 003445 85 LWDLEEAKIVRT------------LTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKG-CIHTYK-----GHTRG 145 (819)
Q Consensus 85 IWDl~s~~~i~~------------l~~h~~~I~sl~fsp~g~-~Lasgs~Dg~I~IwDi~t~~-~i~~~~-----~h~~~ 145 (819)
|+|-...+.+.. .+||...++|.+|+|..+ .|++++.||+++|||+...+ .++.++ +..-+
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 999665444333 247889999999999765 69999999999999997543 334443 23346
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCe---EEEEEecCCC--CeEEEEEeCCCCEEEEEECCCeEEEEECCCCe-E
Q 003445 146 VNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK---LLHDFKCHEG--QIQCIDFHPHEFLLATGSADRTVKFWDLETFE-L 219 (819)
Q Consensus 146 I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~---~i~~~~~h~~--~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~-~ 219 (819)
++.++|++||++|++|+.||.|.+||..... ..+.-+.|.. .|+|+.|+++|++|++-+.|+++++||+++.+ +
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 8999999999999999999999999986432 2233346766 89999999999999999999999999999865 4
Q ss_pred EEEeCCC--CCCeeEEEEeCCCCEEEEEEC-------CCEEEEEecCCceeeeeeccccceeEeEecCC-CEEEEEEcCC
Q 003445 220 IGSAGPE--TSGVRCLTFNPDGRTLLCGLH-------ESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEG-KLLGCSYNQS 289 (819)
Q Consensus 220 l~~~~~~--~~~I~sl~fspdg~~Lasgs~-------d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg-~lLa~~~~Dg 289 (819)
+....+. ..+-+.++|+|+.++|++|+. +.+.+||-.+......+......+..+.||.. ..+.+|+.||
T Consensus 400 L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG 479 (641)
T KOG0772|consen 400 LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDG 479 (641)
T ss_pred hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCC
Confidence 4443322 234578999999999999853 13666766666665555555555555556543 5666777778
Q ss_pred eEEEE
Q 003445 290 CVGVW 294 (819)
Q Consensus 290 ~V~IW 294 (819)
.++|+
T Consensus 480 ~~~vy 484 (641)
T KOG0772|consen 480 TAHVY 484 (641)
T ss_pred ceEEE
Confidence 88887
No 82
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=3.3e-24 Score=238.61 Aligned_cols=284 Identities=24% Similarity=0.401 Sum_probs=242.6
Q ss_pred ceE-EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceE--EEecCCCCCeEE-EEEcC-CCCEEEEEECCC
Q 003445 7 YKL-QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI--LSLSGHTSGIDS-VSFDS-SEVLVAAGAASG 81 (819)
Q Consensus 7 ~kl-~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i--~~l~~h~~~V~~-l~fsp-dg~~Lasgs~DG 81 (819)
|++ .++.+|+..|..+++.+ +..+++++.||++++|+-...+.+ ..+.+|.+.|.+ +++.+ ++-.+++|+.|+
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred ceeEEEeccCccchheeEecC--CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 444 48899999999999874 346899999999999997544443 456778888877 88875 445689999999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 003445 82 TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSG 161 (819)
Q Consensus 82 ~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sg 161 (819)
.|.+|.+....++.++.+|...|+++....++. +++||.|.++++|-+ +++...+.+|+..|+++++-|++ .+++|
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTg 157 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTG 157 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEec
Confidence 999999999999999999999999999887776 999999999999976 55667799999999999999987 79999
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCE
Q 003445 162 GEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRT 241 (819)
Q Consensus 162 s~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~ 241 (819)
+.|.+|++|.- ++.+.+|.+|...|..+++-+++ .+++++.||.|++|++ +|+.+..+.+|...++++....++..
T Consensus 158 saDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~ 233 (745)
T KOG0301|consen 158 SADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGL 233 (745)
T ss_pred cCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCe
Confidence 99999999975 88999999999999999998875 5778889999999999 78899999999999999997666677
Q ss_pred EEEEECC-CEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEEecCCcee
Q 003445 242 LLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIE 302 (819)
Q Consensus 242 Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~ 302 (819)
+++++.| .++||+-+ .|.+.+......+.+..+-.+.-+++|+.||.||||..+-.+..
T Consensus 234 Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~R~A 293 (745)
T KOG0301|consen 234 IVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKDRKA 293 (745)
T ss_pred EEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecccccC
Confidence 7766665 69999877 88888888887777777766666778899999999988866654
No 83
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=5.9e-24 Score=225.62 Aligned_cols=247 Identities=20% Similarity=0.407 Sum_probs=219.3
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
-+..|+||...|+.+.|+| +...+++++.|-.|+||.............|.++|+.+..+|.|.||++++.||...+.|
T Consensus 253 ~l~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd 331 (506)
T KOG0289|consen 253 ILATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSD 331 (506)
T ss_pred hhhhccCcceEEEEEEecc-chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEE
Confidence 3568999999999999999 667799999999999999988888888889999999999999999999999999999999
Q ss_pred CCCCeEEEEEcC--CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003445 88 LEEAKIVRTLTG--HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (819)
Q Consensus 88 l~s~~~i~~l~~--h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg 165 (819)
++++..+..... ..-.+++.+|||||..|.+|..||.|+|||+..+..+..|.+|.++|..++|+.+|-||+++++|+
T Consensus 332 ~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~ 411 (506)
T KOG0289|consen 332 ISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG 411 (506)
T ss_pred ccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC
Confidence 999998776653 233589999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEEecCC-CCeEEEEEeCCCCEEEEEECCCeEEEEEC--CCCeEEEEeCCCCCCeeEEEEeCCCCEE
Q 003445 166 TVKLWDLTAGKLLHDFKCHE-GQIQCIDFHPHEFLLATGSADRTVKFWDL--ETFELIGSAGPETSGVRCLTFNPDGRTL 242 (819)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h~-~~I~sl~fspdg~~Lasgs~Dg~I~iwDl--~~~~~l~~~~~~~~~I~sl~fspdg~~L 242 (819)
.|++||+|..+...++.... ..+.++.|.+.|.+|+.++.|=+|++++- ..+..+..+..|.+..+++.|....+++
T Consensus 412 ~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l 491 (506)
T KOG0289|consen 412 SVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYL 491 (506)
T ss_pred eEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEE
Confidence 99999999888777776433 36999999999999999987767777663 3677888888888889999999999999
Q ss_pred EEEECC-CEEEEEe
Q 003445 243 LCGLHE-SLKVFSW 255 (819)
Q Consensus 243 asgs~d-~I~Vwd~ 255 (819)
++++.+ .+++|.+
T Consensus 492 ~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 492 ASTSMDAILRLYAL 505 (506)
T ss_pred eeccchhheEEeec
Confidence 998877 4666643
No 84
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=4.2e-24 Score=228.91 Aligned_cols=251 Identities=27% Similarity=0.491 Sum_probs=213.0
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC----------ceEEEecCCCCCeEEEEEcCCC-CEE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----------NAILSLSGHTSGIDSVSFDSSE-VLV 74 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~----------~~i~~l~~h~~~V~~l~fspdg-~~L 74 (819)
.+++..-..|.+.|+.+.+-|++..++++++..+.|.|||..+. .+-..+.+|...-++++|++.. -.|
T Consensus 114 ~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 114 KVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTL 193 (422)
T ss_pred ceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeE
Confidence 45566667799999999999999999999999999999998432 2233788999988899999854 478
Q ss_pred EEEECCCeEEEEECCCC-------eEEEEEcCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECC--CCeEEEEEecCCC
Q 003445 75 AAGAASGTIKLWDLEEA-------KIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIR--KKGCIHTYKGHTR 144 (819)
Q Consensus 75 asgs~DG~I~IWDl~s~-------~~i~~l~~h~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~--t~~~i~~~~~h~~ 144 (819)
++++.|++|++||+... .....+.+|...|..++|++.. ..|++++.|+.+.|||+| +.++....++|.+
T Consensus 194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~ 273 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA 273 (422)
T ss_pred eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence 89999999999999643 2456788999999999999954 578999999999999999 5666777889999
Q ss_pred CeEEEEEcC-CCCEEEEEECCCeEEEEECCCC-eEEEEEecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCC----
Q 003445 145 GVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETF---- 217 (819)
Q Consensus 145 ~I~sl~fsp-dg~~L~sgs~Dg~I~IwDl~t~-~~i~~~~~h~~~I~sl~fspd-g~~Lasgs~Dg~I~iwDl~~~---- 217 (819)
.|+|++|+| ++..||+|+.|++|.+||+|+- ++++.+.+|...|.++.|+|+ ...||+++.|+.+.+||+...
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 999999999 5667889999999999999974 578899999999999999996 679999999999999999642
Q ss_pred ----------eEEEEeCCCCCCeeEEEEeCCCCEEEEEE-CC-CEEEEEec
Q 003445 218 ----------ELIGSAGPETSGVRCLTFNPDGRTLLCGL-HE-SLKVFSWE 256 (819)
Q Consensus 218 ----------~~l~~~~~~~~~I~sl~fspdg~~Lasgs-~d-~I~Vwd~~ 256 (819)
+++..-.+|...|..+.|+|+...++++. +| .+.||.+.
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 34566788999999999999988877553 33 59999875
No 85
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=6.6e-25 Score=224.65 Aligned_cols=255 Identities=22% Similarity=0.416 Sum_probs=214.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc--------CCCCCeEEEEEecCCCEEEEEECCCcEEEE
Q 003445 57 GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT--------GHRSNCISVDFHPFGEFFASGSLDTNLKIW 128 (819)
Q Consensus 57 ~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~--------~h~~~I~sl~fsp~g~~Lasgs~Dg~I~Iw 128 (819)
+..+.+.|..|+|||+||++|+.||.|.+||.-+|+....++ -+...|.|++|+.|...+|+|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 456678999999999999999999999999999988655443 467899999999999999999999999999
Q ss_pred ECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC
Q 003445 129 DIRKKGCIHTYK-GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR 207 (819)
Q Consensus 129 Di~t~~~i~~~~-~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg 207 (819)
.+++|.|++.|. .|...|+|+.|+.|+..+++++.|.++++.-+.+|+++++|++|.+-|+...|.++|..+++++.||
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence 999999999997 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEeCCC--CCCeeEEEEeCCCC--EEEEEECCCEEEEEecCCceeeeeec----cccceeEeEecCC
Q 003445 208 TVKFWDLETFELIGSAGPE--TSGVRCLTFNPDGR--TLLCGLHESLKVFSWEPIRCHDAVDV----GWSRLSDLNVHEG 279 (819)
Q Consensus 208 ~I~iwDl~~~~~l~~~~~~--~~~I~sl~fspdg~--~Lasgs~d~I~Vwd~~~~~~~~~~~~----~~s~i~~l~~~dg 279 (819)
+|++|+..+.+++.++++. ..+|..+..-|.+. ++++.-.+.+.|.++.. +....+.. +..-+.....+.|
T Consensus 371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-QvVrsfsSGkREgGdFi~~~lSpkG 449 (508)
T KOG0275|consen 371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QVVRSFSSGKREGGDFINAILSPKG 449 (508)
T ss_pred cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eEEeeeccCCccCCceEEEEecCCC
Confidence 9999999999999888765 45678877777543 33333344566666543 33333322 2344556666899
Q ss_pred CEEEEEEcCCeEEEEEecCCceeeeeeccccee
Q 003445 280 KLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRV 312 (819)
Q Consensus 280 ~lLa~~~~Dg~V~IW~ld~~~~~p~~~~~~~~~ 312 (819)
.++.|.+.|+.++.|.+..+.++....-+...+
T Consensus 450 ewiYcigED~vlYCF~~~sG~LE~tl~VhEkdv 482 (508)
T KOG0275|consen 450 EWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDV 482 (508)
T ss_pred cEEEEEccCcEEEEEEeecCceeeeeecccccc
Confidence 999999999999999999999987665554433
No 86
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.7e-22 Score=198.51 Aligned_cols=292 Identities=19% Similarity=0.317 Sum_probs=230.3
Q ss_pred cccceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC--------------ce-EEEecCCCCCeEEEEEc
Q 003445 4 KRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP--------------NA-ILSLSGHTSGIDSVSFD 68 (819)
Q Consensus 4 kr~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~--------------~~-i~~l~~h~~~V~~l~fs 68 (819)
++.+........+..|.+++|+| .+.+.++|+...+++|.....- .. .+.-+.|.+.|+|.+|+
T Consensus 20 k~~f~~i~~l~dsqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 20 KKHFEAINILEDSQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred ccceEEEEEecchhheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec
Confidence 33444445556677899999999 6678899999999998754211 11 12234688999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeE-----EEEEcCCCCCeEEEEEecC----CCEEEEEE-CCCcEEEEECCCCeEEEE
Q 003445 69 SSEVLVAAGAASGTIKLWDLEEAKI-----VRTLTGHRSNCISVDFHPF----GEFFASGS-LDTNLKIWDIRKKGCIHT 138 (819)
Q Consensus 69 pdg~~Lasgs~DG~I~IWDl~s~~~-----i~~l~~h~~~I~sl~fsp~----g~~Lasgs-~Dg~I~IwDi~t~~~i~~ 138 (819)
|+|.+|++|+.|.+|++.-+..... -..+.-|.+.|..++|..+ +..|++++ .|..|++-|..+++..+.
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 9999999999999999987654322 2346679999999999653 44677655 477888999999999999
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec--C-----CCCeEEEEEeCCCCEEEEEECCCeEEE
Q 003445 139 YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC--H-----EGQIQCIDFHPHEFLLATGSADRTVKF 211 (819)
Q Consensus 139 ~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~--h-----~~~I~sl~fspdg~~Lasgs~Dg~I~i 211 (819)
+.+|.+.|.++- +-+|-++++|+.|.+|++||++-..++..+.. | .+.|.+++..|.|++|++|..|....+
T Consensus 179 ~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~l 257 (350)
T KOG0641|consen 179 LSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML 257 (350)
T ss_pred ecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEE
Confidence 999999988763 33578999999999999999998888877642 2 256999999999999999999999999
Q ss_pred EECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCcee----eeeeccccceeEeEecC-CCEEEEE
Q 003445 212 WDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCH----DAVDVGWSRLSDLNVHE-GKLLGCS 285 (819)
Q Consensus 212 wDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~----~~~~~~~s~i~~l~~~d-g~lLa~~ 285 (819)
||++.+..++.+.+|...|+|+.|+|...||++++.+ .|++-|+...-.+ -++..+-...-.+.+|. .--++++
T Consensus 258 ydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 258 YDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS 337 (350)
T ss_pred EEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeec
Confidence 9999999999999999999999999999999999877 6999998754322 23333444444455554 4556788
Q ss_pred EcCCeEEEEEec
Q 003445 286 YNQSCVGVWVVD 297 (819)
Q Consensus 286 ~~Dg~V~IW~ld 297 (819)
+.|.++.+|.+.
T Consensus 338 sadkt~tlwa~~ 349 (350)
T KOG0641|consen 338 SADKTATLWALN 349 (350)
T ss_pred cCcceEEEeccC
Confidence 899999999764
No 87
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.7e-23 Score=214.93 Aligned_cols=263 Identities=19% Similarity=0.376 Sum_probs=220.6
Q ss_pred EEEEeCCCeEEEEECCCC------------ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003445 32 LVTGGEDHKVNLWAIGKP------------NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (819)
Q Consensus 32 Latgs~Dg~V~IWdl~~~------------~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~ 99 (819)
+++|++...|.-+++... ..++.+..|.++|++++. ++.++++|+.|-+|+|||+.....+..+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceec
Confidence 566766666666655211 225567789999999998 588999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCC--EEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003445 100 HRSNCISVDFHPFGE--FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL 177 (819)
Q Consensus 100 h~~~I~sl~fsp~g~--~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~ 177 (819)
|.+.|+++.|.+.-. .|++|+.||.|.+|+...+.++.++++|.+.|+.++.+|.|++.++.+.|+.++.||+-.|+.
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 999999999998765 899999999999999999999999999999999999999999999999999999999999987
Q ss_pred EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEec
Q 003445 178 LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWE 256 (819)
Q Consensus 178 i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~ 256 (819)
-...+.. ..-+.+.|+|.|.+++.++.+ .|-+|.+++-.....+... ..+.|+.|. ++.+|++|.++ .|.+||-+
T Consensus 162 a~v~~L~-~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 162 AFVLNLK-NKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred ceeeccC-CcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCceEEEeccC
Confidence 7666532 223459999999988888765 5899999887665554433 456778777 45566776666 69999999
Q ss_pred CCceeeeeeccccceeEeEe---cCCCEEEEEEcCCeEEEEEecCCc
Q 003445 257 PIRCHDAVDVGWSRLSDLNV---HEGKLLGCSYNQSCVGVWVVDISR 300 (819)
Q Consensus 257 ~~~~~~~~~~~~s~i~~l~~---~dg~lLa~~~~Dg~V~IW~ld~~~ 300 (819)
...+...+..+..++.++.+ +++.+|++++.||.|+|||+++..
T Consensus 238 s~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 238 SDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred CCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 99999899999998888875 556999999999999999999983
No 88
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=8.9e-24 Score=215.88 Aligned_cols=238 Identities=21% Similarity=0.417 Sum_probs=200.0
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC-ceE-EEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-NAI-LSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK 92 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~-~~i-~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~ 92 (819)
-.+.|.+|+|+|....++++|+.||+|++|+++.. ..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 46789999999988888889999999999999763 322 3445689999999999999999999999999999999995
Q ss_pred EEEEEcCCCCCeEEEEEecCCC--EEEEEECCCcEEEEECCCCeEEEEEe------------------------------
Q 003445 93 IVRTLTGHRSNCISVDFHPFGE--FFASGSLDTNLKIWDIRKKGCIHTYK------------------------------ 140 (819)
Q Consensus 93 ~i~~l~~h~~~I~sl~fsp~g~--~Lasgs~Dg~I~IwDi~t~~~i~~~~------------------------------ 140 (819)
. ..+..|..+|.++.|-+... .|++|+.|.+|++||.+...++.++.
T Consensus 106 ~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 106 V-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLE 184 (347)
T ss_pred e-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcC
Confidence 4 56667999999999987665 79999999999999999766554432
Q ss_pred -------cC----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--eEEEEEecCCC---------CeEEEEEeCCCC
Q 003445 141 -------GH----TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG--KLLHDFKCHEG---------QIQCIDFHPHEF 198 (819)
Q Consensus 141 -------~h----~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~--~~i~~~~~h~~---------~I~sl~fspdg~ 198 (819)
.+ +-.+.|++..+|....+.|+-+|.+.|..+..+ +.-..|++|.. .|++|+|||...
T Consensus 185 n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg 264 (347)
T KOG0647|consen 185 NPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG 264 (347)
T ss_pred CCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc
Confidence 11 224778888888888899999999999988876 55667778763 478899999999
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCC
Q 003445 199 LLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPI 258 (819)
Q Consensus 199 ~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~ 258 (819)
.|++.+.||+..+||-+....+.....+..+|++..|+.+|.+++.+. =|||..+
T Consensus 265 tlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~-----gYDWSkG 319 (347)
T KOG0647|consen 265 TLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL-----GYDWSKG 319 (347)
T ss_pred eEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe-----ecccccc
Confidence 999999999999999999888999999999999999999999998763 2556544
No 89
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.92 E-value=1.4e-23 Score=219.86 Aligned_cols=250 Identities=26% Similarity=0.478 Sum_probs=214.0
Q ss_pred cccceEEEEeccCCCEEEEEEeeCC--CcEEEEEeCCCeEEEEECCCCceE----EEecCCCCCeEEEEEcCCCCEEEEE
Q 003445 4 KRAYKLQEFVAHSSTVNCLKIGRKS--SRVLVTGGEDHKVNLWAIGKPNAI----LSLSGHTSGIDSVSFDSSEVLVAAG 77 (819)
Q Consensus 4 kr~~kl~~~~~H~~~V~~lafsp~~--~~~Latgs~Dg~V~IWdl~~~~~i----~~l~~h~~~V~~l~fspdg~~Lasg 77 (819)
.+...+..+.+|.++|..++|.-.+ ...|++++.|.++++|.++.+... ..-.||...|.++...+++..+++|
T Consensus 132 ~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~Sg 211 (423)
T KOG0313|consen 132 LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSG 211 (423)
T ss_pred cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEee
Confidence 4455677899999999998886533 236999999999999998766432 2334999999999999999999999
Q ss_pred ECCCeEEEEECC-------------------------CCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC
Q 003445 78 AASGTIKLWDLE-------------------------EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK 132 (819)
Q Consensus 78 s~DG~I~IWDl~-------------------------s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t 132 (819)
+.|..|.+|+.+ ++.++.++.+|..+|.++.|++ ...+++++.|.+|+.||+.+
T Consensus 212 S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet 290 (423)
T KOG0313|consen 212 SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET 290 (423)
T ss_pred cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeec
Confidence 999999999932 1235667889999999999997 77899999999999999999
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe---EEEEEecCCCCeEEEEEeCC-CCEEEEEECCCe
Q 003445 133 KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK---LLHDFKCHEGQIQCIDFHPH-EFLLATGSADRT 208 (819)
Q Consensus 133 ~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~---~i~~~~~h~~~I~sl~fspd-g~~Lasgs~Dg~ 208 (819)
++.+.++.+ ...+.|+.++|..++|++|+.|..|++||.+++. ..++|.+|...|.++.|+|. ...|++|+.|++
T Consensus 291 g~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t 369 (423)
T KOG0313|consen 291 GGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT 369 (423)
T ss_pred ccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe
Confidence 999988885 5569999999999999999999999999999763 56678899999999999995 678999999999
Q ss_pred EEEEECCCCe-EEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEec
Q 003445 209 VKFWDLETFE-LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWE 256 (819)
Q Consensus 209 I~iwDl~~~~-~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~ 256 (819)
+++||+++-+ ++..+..|...|.++.|. ++.++++|+.| .|+||.-.
T Consensus 370 ~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 370 VKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 9999999877 899999999999999998 45577777666 68887643
No 90
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=1.1e-23 Score=245.50 Aligned_cols=252 Identities=21% Similarity=0.426 Sum_probs=219.3
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC------------------CceEEEecCCCCCeEEEEEcC
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK------------------PNAILSLSGHTSGIDSVSFDS 69 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~------------------~~~i~~l~~h~~~V~~l~fsp 69 (819)
.+.....|.+.|+|+.|+| ++.+||+|++|+.|.||.... -+++..+.+|...|..++|+|
T Consensus 61 ~l~~m~~h~~sv~CVR~S~-dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFSP-DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hheeeccccCceeEEEECC-CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 4456778999999999999 788999999999999998752 136678889999999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCC------
Q 003445 70 SEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT------ 143 (819)
Q Consensus 70 dg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~------ 143 (819)
++.+|++++.|++|.+||..+.+.+..+.+|.+.|..+.|.|-|+|||+-+.|++|++|++.+..+.+.+..+-
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~ 219 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLT 219 (942)
T ss_pred CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999988888887776543
Q ss_pred CCeEEEEEcCCCCEEEEEEC----CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCC-----CC------------EEEE
Q 003445 144 RGVNAIRFTPDGRWVVSGGE----DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPH-----EF------------LLAT 202 (819)
Q Consensus 144 ~~I~sl~fspdg~~L~sgs~----Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspd-----g~------------~Las 202 (819)
..+..+.|+|||++|++... -.++.|.+-.+.+.-..+-+|.+++.++.|+|. .. .+|+
T Consensus 220 T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Av 299 (942)
T KOG0973|consen 220 TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAV 299 (942)
T ss_pred ceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEE
Confidence 35788999999999998643 347899998888888899999999999999981 11 7899
Q ss_pred EECCCeEEEEECCCCeEEEEe-CCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCce
Q 003445 203 GSADRTVKFWDLETFELIGSA-GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRC 260 (819)
Q Consensus 203 gs~Dg~I~iwDl~~~~~l~~~-~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~ 260 (819)
|+.|++|.||.....+++..+ .-....|.+++|+|||..|++++.| .+.++.++..+.
T Consensus 300 gSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 300 GSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred ecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 999999999999877776654 3346789999999999999887766 599999886554
No 91
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=6.6e-24 Score=223.80 Aligned_cols=261 Identities=19% Similarity=0.315 Sum_probs=216.0
Q ss_pred eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 003445 51 AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA---KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKI 127 (819)
Q Consensus 51 ~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~---~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~I 127 (819)
..+.+..|+..|+.+.|+++|+|||+++.|.+..+|++... +...++.+|..+|..+.|+||.++|++++.|..+.+
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 34556789999999999999999999999999999998644 457889999999999999999999999999999999
Q ss_pred EECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecC-CCCeEEEEEeCCCCEEEEEEC
Q 003445 128 WDIRKKGCIHTYKG-HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH-EGQIQCIDFHPHEFLLATGSA 205 (819)
Q Consensus 128 wDi~t~~~i~~~~~-h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h-~~~I~sl~fspdg~~Lasgs~ 205 (819)
||+.+|.+...+.. +...+.+++|.|||..+++|+.|+.|..||+. |+.+..+++- ...|.+++..+||+++++.+.
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 99999999888763 45779999999999999999999999999987 4445555542 356999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeecccc---ce-eEeEecCCC
Q 003445 206 DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWS---RL-SDLNVHEGK 280 (819)
Q Consensus 206 Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s---~i-~~l~~~dg~ 280 (819)
|..|++|+.++......+ ....+|++++.+.||+++++.-.+ .+++||++..+....+..+-. .+ .++-.++..
T Consensus 375 d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~ 453 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDK 453 (519)
T ss_pred ccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcc
Confidence 999999999876555433 345789999999999999988655 799999997665554433322 22 223336779
Q ss_pred EEEEEEcCCeEEEEEecCCceeeeeecccceec
Q 003445 281 LLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVN 313 (819)
Q Consensus 281 lLa~~~~Dg~V~IW~ld~~~~~p~~~~~~~~~n 313 (819)
++++|++|+.|+||+-..+++.....|+..-+|
T Consensus 454 fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vN 486 (519)
T KOG0293|consen 454 FIASGSEDSKVYIWHRISGKLLAVLSGHSKTVN 486 (519)
T ss_pred eEEecCCCceEEEEEccCCceeEeecCCcceee
Confidence 999999999999999999998876666654433
No 92
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.3e-23 Score=212.72 Aligned_cols=244 Identities=18% Similarity=0.373 Sum_probs=209.7
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCC--EEEEEECCCeEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV--LVAAGAASGTIKL 85 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~--~Lasgs~DG~I~I 85 (819)
.+..|.+|.+.|+|++. ++.++|+|+.|.+|+|||+.+...+..+..|.+.|+++.|.++-. .|++|+.||.|.+
T Consensus 35 ~lF~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred ccccccccccceeEEEe---cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 46688999999999999 467999999999999999999999999999999999999998765 8899999999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003445 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (819)
Q Consensus 86 WDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg 165 (819)
|+......+.++++|.+.|+.++.||.+++-++.+.|+.++.||+-+|+.-..+.- ....+.+.|+|.|.+++.+..+
T Consensus 112 w~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~- 189 (362)
T KOG0294|consen 112 WRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN- 189 (362)
T ss_pred EEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-
Confidence 99999999999999999999999999999999999999999999998876555442 2234559999999998888654
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEE--eCCCCEEE
Q 003445 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTF--NPDGRTLL 243 (819)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~f--spdg~~La 243 (819)
.|-+|.+.+......+. ....+.|+.|. ++..|++|..|+.|.+||.....++..+.+|...|.++.+ .|++.+|+
T Consensus 190 ~i~i~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lv 267 (362)
T KOG0294|consen 190 KIDIYQLDNASVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLV 267 (362)
T ss_pred EEEEEecccHhHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEE
Confidence 67899888776655554 23557777774 5678999999999999999999999999999999999985 46788888
Q ss_pred EEECC-CEEEEEecCC
Q 003445 244 CGLHE-SLKVFSWEPI 258 (819)
Q Consensus 244 sgs~d-~I~Vwd~~~~ 258 (819)
+.+.| .|+|||.+..
T Consensus 268 TaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 268 TASSDGFIKVWDIDME 283 (362)
T ss_pred EeccCceEEEEEcccc
Confidence 77655 5999998765
No 93
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.5e-24 Score=237.90 Aligned_cols=283 Identities=19% Similarity=0.382 Sum_probs=234.9
Q ss_pred ccCCCEE---EEEEeeCCCcEEEEEeCCCeEEEEECCCCc------eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003445 14 AHSSTVN---CLKIGRKSSRVLVTGGEDHKVNLWAIGKPN------AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIK 84 (819)
Q Consensus 14 ~H~~~V~---~lafsp~~~~~Latgs~Dg~V~IWdl~~~~------~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (819)
.|...|. .+..+..++++|++||.||.|++|++.... .+..+..|...|+.+....+++.|++++.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 4556677 666777788999999999999999984322 3667788999999999999999999999999999
Q ss_pred EEECCCC--eEEEEEcCCCCCeEEEEE-ecCCCEEEEEECCCcEEEEECCCCe--EEEE--------Ee-cCCCCeEEEE
Q 003445 85 LWDLEEA--KIVRTLTGHRSNCISVDF-HPFGEFFASGSLDTNLKIWDIRKKG--CIHT--------YK-GHTRGVNAIR 150 (819)
Q Consensus 85 IWDl~s~--~~i~~l~~h~~~I~sl~f-sp~g~~Lasgs~Dg~I~IwDi~t~~--~i~~--------~~-~h~~~I~sl~ 150 (819)
+|+...+ -+..++..|.+.|.|+++ -++...+|+|+.|+.|.+||+.++. .+.+ +. ++...|++++
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 9999877 567788899999999999 7788899999999999999999772 2222 22 7888999999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCe
Q 003445 151 FTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGV 230 (819)
Q Consensus 151 fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I 230 (819)
.++.|..|++|+..+.|++||.++++.+..+.+|...|.++..++||..+++++.||+|++||+...+++.++..|...|
T Consensus 179 ~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~V 258 (735)
T KOG0308|consen 179 MNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGV 258 (735)
T ss_pred cCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCEEEEEECCC-EEEEEecCC-ceeeeeeccccceeEeEe--cCCCEEEEEEcCCeEEEEEecC
Q 003445 231 RCLTFNPDGRTLLCGLHES-LKVFSWEPI-RCHDAVDVGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 231 ~sl~fspdg~~Lasgs~d~-I~Vwd~~~~-~~~~~~~~~~s~i~~l~~--~dg~lLa~~~~Dg~V~IW~ld~ 298 (819)
+++..+|+=..+++|+.++ |..-++... ++..++ -...++..+.. ++..+ =++..|+.|.-|....
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic-k~daPv~~l~~~~~~~~~-WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC-KEDAPVLKLHLHEHDNSV-WVTTTDSSIKRWKLEP 328 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCchhheEee-cCCCchhhhhhccccCCc-eeeeccccceecCCcc
Confidence 9999999999999887765 665566552 332222 22223333333 34444 5667788999996654
No 94
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=1e-23 Score=212.09 Aligned_cols=249 Identities=21% Similarity=0.414 Sum_probs=212.7
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC-----C
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA-----S 80 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~-----D 80 (819)
.-++-++.||.+.|+|++... +...+++|+.|.++++||+.+|+++..++ ...+|..+.|+.+|++++.... .
T Consensus 42 GerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~ 119 (327)
T KOG0643|consen 42 GERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYT 119 (327)
T ss_pred CceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcc
Confidence 446778999999999999998 67789999999999999999999999988 5778999999999998877654 4
Q ss_pred CeEEEEECC-------CCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEEEc
Q 003445 81 GTIKLWDLE-------EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFT 152 (819)
Q Consensus 81 G~I~IWDl~-------s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~-~~i~~~~~h~~~I~sl~fs 152 (819)
+.|.++|++ ..++...+..+.+.++.+-|.|-+++|++|..||.|.+||++++ +.+.....|...|+.++++
T Consensus 120 ~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s 199 (327)
T KOG0643|consen 120 CFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFS 199 (327)
T ss_pred eEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcccccccccc
Confidence 789999997 45567788888899999999999999999999999999999997 4556667899999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCe--E------------EEEECCCCe
Q 003445 153 PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRT--V------------KFWDLETFE 218 (819)
Q Consensus 153 pdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~--I------------~iwDl~~~~ 218 (819)
+|..++++++.|.+-++||.++-++++++.. ..+|++.+++|....++.|+.... | ++|++-..+
T Consensus 200 ~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eE 278 (327)
T KOG0643|consen 200 RDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEE 278 (327)
T ss_pred CCcceEEecccCccceeeeccceeeEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHH
Confidence 9999999999999999999999999999984 789999999998777766653221 1 223332234
Q ss_pred EEEEeCCCCCCeeEEEEeCCCCEEEEEECCC-EEEEEecC
Q 003445 219 LIGSAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFSWEP 257 (819)
Q Consensus 219 ~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~~ 257 (819)
.+...++|-++|++++|+|+|+..++|+.++ +++..++.
T Consensus 279 EigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 279 EIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred HhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 5667789999999999999999999998875 88877664
No 95
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.3e-22 Score=204.77 Aligned_cols=256 Identities=18% Similarity=0.304 Sum_probs=213.5
Q ss_pred ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEEC--CCcEEE
Q 003445 50 NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL--DTNLKI 127 (819)
Q Consensus 50 ~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~--Dg~I~I 127 (819)
+..+.+......|+++.|+++|.++++++.|.+|++||..+++.++++..+.-.|..++|......++.++. |.+|+.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 334455556789999999999999999999999999999999999999988889999999887887777776 889999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC
Q 003445 128 WDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR 207 (819)
Q Consensus 128 wDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg 207 (819)
.++.+.+.++.+.+|...|..++.+|-+..+++++.|++|++||++..++...+.... -..++|+|.|-++|++...+
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCcEEEEecCCC
Confidence 9999999999999999999999999999999999999999999999888877776433 34678999999999999888
Q ss_pred eEEEEECCCC--eEEEEeC---CCCCCeeEEEEeCCCCEEEEEECCC-EEEEEecCCceeeeeeccc----cceeEeEec
Q 003445 208 TVKFWDLETF--ELIGSAG---PETSGVRCLTFNPDGRTLLCGLHES-LKVFSWEPIRCHDAVDVGW----SRLSDLNVH 277 (819)
Q Consensus 208 ~I~iwDl~~~--~~l~~~~---~~~~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~~~~~~~~~~~~~----s~i~~l~~~ 277 (819)
.|++||++.. .+...+. +.....+.+.|+|||++|+.++..+ +.+.|--.+.....+.... ..+.....+
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP 242 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP 242 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence 9999999874 2333332 3466789999999999999887765 7777776666555553322 234556669
Q ss_pred CCCEEEEEEcCCeEEEEEecCCceeeeeec
Q 003445 278 EGKLLGCSYNQSCVGVWVVDISRIEPYTIG 307 (819)
Q Consensus 278 dg~lLa~~~~Dg~V~IW~ld~~~~~p~~~~ 307 (819)
|++++.+|++||.|.+|+++++...-...+
T Consensus 243 ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 243 DSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred CCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 999999999999999999988877654444
No 96
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=1.2e-23 Score=225.91 Aligned_cols=281 Identities=23% Similarity=0.342 Sum_probs=229.8
Q ss_pred EeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC---ceEEEecC--CCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP---NAILSLSG--HTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~---~~i~~l~~--h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
...|..-|.++.++. ..+.++||+. |.|+|||+... ..+..+.. ....|+.+...|||+.|++|+.-.++.||
T Consensus 415 tL~HGEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred hhccCcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence 346999899999997 6678999986 66999999543 33444443 35689999999999999999999999999
Q ss_pred ECCCCeE--EEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003445 87 DLEEAKI--VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (819)
Q Consensus 87 Dl~s~~~--i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~D 164 (819)
|+..... ...+....-.+.+++.+||.+..++++.||.|.|||+++...+..|++|.+.+.||.+++||..|.+|+-|
T Consensus 493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCc
Confidence 9976543 33444444678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEE
Q 003445 165 NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLC 244 (819)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Las 244 (819)
++|+.||+++++.+.+.. ..+.|.++.++|++.+|+.|-+++.+.+...... ....+..|.+.|.++.|.+.|+++++
T Consensus 573 ntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvS 650 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVS 650 (705)
T ss_pred cceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeee
Confidence 999999999998877655 4678999999999999999999999998887643 34556778899999999999999996
Q ss_pred EECC-CEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEEe
Q 003445 245 GLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 296 (819)
Q Consensus 245 gs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~l 296 (819)
.+.| -+..|...-+..+....-..+.+.+-...|++++++|+.|..-.||.+
T Consensus 651 tGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 651 TGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 5544 577887655444333333333344444478999999999998888865
No 97
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=2.8e-21 Score=207.34 Aligned_cols=267 Identities=17% Similarity=0.207 Sum_probs=207.2
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEE
Q 003445 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLV-AAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVD 108 (819)
Q Consensus 30 ~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~L-asgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~ 108 (819)
.++++++.|+.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+.. +..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 578899999999999999999888887654 46789999999876 5667789999999999988877765544 56789
Q ss_pred EecCCCEEEEE-ECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC-eEEEEECCCCeEEEEEecCCC
Q 003445 109 FHPFGEFFASG-SLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN-TVKLWDLTAGKLLHDFKCHEG 186 (819)
Q Consensus 109 fsp~g~~Lasg-s~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg-~I~IwDl~t~~~i~~~~~h~~ 186 (819)
|+|+++.++++ +.++.|++||+++.+.+..+.. ...+.+++|+|+|.+++++..++ .+.+||..+++....... ..
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~ 157 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQ 157 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CC
Confidence 99999977654 5689999999999888877763 34468899999999999988765 577889998877665543 34
Q ss_pred CeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCeEEEEeCCCC-------CCeeEEEEeCCCCEEEEE--ECCCEEEEEec
Q 003445 187 QIQCIDFHPHEFLLATGS-ADRTVKFWDLETFELIGSAGPET-------SGVRCLTFNPDGRTLLCG--LHESLKVFSWE 256 (819)
Q Consensus 187 ~I~sl~fspdg~~Lasgs-~Dg~I~iwDl~~~~~l~~~~~~~-------~~I~sl~fspdg~~Lasg--s~d~I~Vwd~~ 256 (819)
.+.++.|+|++.+|++++ .++.|++||+++++.+..+..+. .....+.|+|+|++++++ ..+.+.+||.+
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 567899999999886554 68999999999988776653221 123568899999986654 34579999998
Q ss_pred CCceeeeeeccccceeEeEe-cCCCEEEEE-EcCCeEEEEEecCCce
Q 003445 257 PIRCHDAVDVGWSRLSDLNV-HEGKLLGCS-YNQSCVGVWVVDISRI 301 (819)
Q Consensus 257 ~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~-~~Dg~V~IW~ld~~~~ 301 (819)
+.+....+..+. .+..+.+ ++|+.|+++ ..++.|.+||++..+.
T Consensus 238 ~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 238 TYEVLDYLLVGQ-RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CCcEEEEEEeCC-CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 877665443332 3444544 788888876 5689999999999885
No 98
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=9.3e-23 Score=204.73 Aligned_cols=236 Identities=17% Similarity=0.263 Sum_probs=213.8
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (819)
....+|.+.|-.++|+|....+|++++.|.+|++||+..+++...+.... .=.-+.|+|+|.++++++.|..|...|..
T Consensus 58 ~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~-eni~i~wsp~g~~~~~~~kdD~it~id~r 136 (313)
T KOG1407|consen 58 LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKG-ENINITWSPDGEYIAVGNKDDRITFIDAR 136 (313)
T ss_pred hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccC-cceEEEEcCCCCEEEEecCcccEEEEEec
Confidence 35678999999999999999999999999999999999999999887444 44568899999999999999999999999
Q ss_pred CCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (819)
Q Consensus 90 s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~I 169 (819)
+.+.+...+ ..-.+.-++|+-++++|+.....|.|.|......+++..++.|...+.||.|+|+|++|++|+.|..+.+
T Consensus 137 ~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSL 215 (313)
T KOG1407|consen 137 TYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSL 215 (313)
T ss_pred ccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeec
Confidence 888877665 4556778899977888777777899999999999999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC
Q 003445 170 WDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (819)
Q Consensus 170 wDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (819)
||+..--++..+.-+.-+|..+.|+.+|++||+|++|..|-|=++++|..+..++ +.++...++|+|...+||.+.++
T Consensus 216 WD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 216 WDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 9999998999999999999999999999999999999999999999999998885 45788999999999999977665
No 99
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.2e-22 Score=217.68 Aligned_cols=288 Identities=20% Similarity=0.369 Sum_probs=233.9
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEE----E-------------e-cCCCCCeEEEEEcCC
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL----S-------------L-SGHTSGIDSVSFDSS 70 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~----~-------------l-~~h~~~V~~l~fspd 70 (819)
+..+..|.-+|.|++++| +..+.++++.+|+|.=|++.+++... . - .+|...+.+++.++|
T Consensus 135 ~~~~~~H~~s~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeec-cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 567788999999999999 66679999999999999997766331 0 1 268889999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEE
Q 003445 71 EVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIR 150 (819)
Q Consensus 71 g~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~ 150 (819)
++||++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|+.|++|+++....+.++.+|.+.|..|.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 99999999999999999999999999999999999999998778899999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC-C---
Q 003445 151 FTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP-E--- 226 (819)
Q Consensus 151 fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~-~--- 226 (819)
...-++.+.+|+.|.++++|++. -+....|.++.+.+-|++|-. ...+++|+.||.|.+|++.+.+++..... |
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred hhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeecccccc
Confidence 99888888888899999999994 344456778889999999964 45899999999999999999888876431 1
Q ss_pred --------CCCeeEEEEeCCCCEEEEEECC-CEEEEEecCC----ceeeeeeccccceeEeE-ecCCCEE-EEEEcCCeE
Q 003445 227 --------TSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPI----RCHDAVDVGWSRLSDLN-VHEGKLL-GCSYNQSCV 291 (819)
Q Consensus 227 --------~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~----~~~~~~~~~~s~i~~l~-~~dg~lL-a~~~~Dg~V 291 (819)
..+|++++..|...++++|+.+ .+++|-.+.+ ..+..+.. ...+..+. ..+|+.+ +..+....+
T Consensus 372 ~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~-~GfVNsl~f~~sgk~ivagiGkEhRl 450 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL-VGFVNSLAFSNSGKRIVAGIGKEHRL 450 (479)
T ss_pred CCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc-ccEEEEEEEccCCCEEEEeccccccc
Confidence 1289999999999999999866 5999998875 22222221 23344555 3677744 444555555
Q ss_pred EEE-EecCCc
Q 003445 292 GVW-VVDISR 300 (819)
Q Consensus 292 ~IW-~ld~~~ 300 (819)
.=| .....+
T Consensus 451 GRW~~~k~~~ 460 (479)
T KOG0299|consen 451 GRWWCLKSGK 460 (479)
T ss_pred ceeeEeeccc
Confidence 444 333333
No 100
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=9.3e-24 Score=233.39 Aligned_cols=292 Identities=21% Similarity=0.343 Sum_probs=237.1
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC--ceEEEecCCCCCeEEEEE-cCCCCEEEEEECCCeEEE
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP--NAILSLSGHTSGIDSVSF-DSSEVLVAAGAASGTIKL 85 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~--~~i~~l~~h~~~V~~l~f-spdg~~Lasgs~DG~I~I 85 (819)
+..++.|.++|+.++... .++.|++++.|-+|++|+...+ -+..++..|...|.|+++ .++..++|+||.|+.|.+
T Consensus 66 ~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~Ifl 144 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCG-NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFL 144 (735)
T ss_pred hhhhhhhHhHHhhHHhhc-CCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEE
Confidence 567888999999999987 6667999999999999999777 567788899999999999 788899999999999999
Q ss_pred EECCCCe--EEE--------EEc-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC
Q 003445 86 WDLEEAK--IVR--------TLT-GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD 154 (819)
Q Consensus 86 WDl~s~~--~i~--------~l~-~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspd 154 (819)
||++++. .+. .+. ++...|++++.++.|..|++|+..+.|++||.++++.+..+.+|...|.++..+.|
T Consensus 145 WDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dD 224 (735)
T KOG0308|consen 145 WDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDD 224 (735)
T ss_pred EEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCC
Confidence 9999772 222 233 78899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEE
Q 003445 155 GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLT 234 (819)
Q Consensus 155 g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~ 234 (819)
|..+++++.||+|++||+...+++.++..|...|+++..+|+-..+++|+.||.|..=|+++......+-....+|..+.
T Consensus 225 Gt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~ 304 (735)
T KOG0308|consen 225 GTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLH 304 (735)
T ss_pred CCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999998654444445566777777
Q ss_pred EeCCCCE-EEEEECCCEEEEEecCCceee-------------------------eeeccccceeEeEecCCCEEEEEEcC
Q 003445 235 FNPDGRT-LLCGLHESLKVFSWEPIRCHD-------------------------AVDVGWSRLSDLNVHEGKLLGCSYNQ 288 (819)
Q Consensus 235 fspdg~~-Lasgs~d~I~Vwd~~~~~~~~-------------------------~~~~~~s~i~~l~~~dg~lLa~~~~D 288 (819)
.+.+.+- -++..+..|+-|-.+..-.+. ++..+......-...|.+.+++-...
T Consensus 305 ~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~ 384 (735)
T KOG0308|consen 305 LHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAK 384 (735)
T ss_pred hccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCC
Confidence 7644333 334444567777654322111 11112221222222466888888999
Q ss_pred CeEEEEEecCCce
Q 003445 289 SCVGVWVVDISRI 301 (819)
Q Consensus 289 g~V~IW~ld~~~~ 301 (819)
|.+.+||+-....
T Consensus 385 gnv~lwDIl~~~~ 397 (735)
T KOG0308|consen 385 GNVALWDILACVK 397 (735)
T ss_pred CCEEEEEeeeeee
Confidence 9999999765443
No 101
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.91 E-value=1.5e-23 Score=221.55 Aligned_cols=242 Identities=25% Similarity=0.426 Sum_probs=210.7
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
..+..+.+-.+.|+.++|.+ .++.+++++.|+.+++|++...+...++.+|++.|+++.|......+++|+.|.+|++|
T Consensus 210 ~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W 288 (459)
T KOG0288|consen 210 ELISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW 288 (459)
T ss_pred hhhhhhhccCCCcceeeecC-CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhh
Confidence 34556777788999999999 56678888899999999999999999999999999999998877779999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003445 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (819)
Q Consensus 87 Dl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~ 166 (819)
|+..+.+..++. ..+.+..|+.. ...+++|-.|+.|++||++...+......+. .|+++..+++|..|++++.|.+
T Consensus 289 Dl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdt 364 (459)
T KOG0288|consen 289 DLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDT 364 (459)
T ss_pred hhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCc
Confidence 999988877765 34556666665 5678999999999999999999999988766 7999999999999999999999
Q ss_pred EEEEECCCCeEEEEEecC----CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCC--CeeEEEEeCCCC
Q 003445 167 VKLWDLTAGKLLHDFKCH----EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETS--GVRCLTFNPDGR 240 (819)
Q Consensus 167 I~IwDl~t~~~i~~~~~h----~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~--~I~sl~fspdg~ 240 (819)
+.++|+++.+..+.+... ....+.+.|+|++.|+++|+.||.|+||++.++++...+..... .|++++|+|.|.
T Consensus 365 l~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~ 444 (459)
T KOG0288|consen 365 LKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGS 444 (459)
T ss_pred eeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCc
Confidence 999999999888887642 23478899999999999999999999999999999888766554 499999999999
Q ss_pred EEEEEECC-CEEEE
Q 003445 241 TLLCGLHE-SLKVF 253 (819)
Q Consensus 241 ~Lasgs~d-~I~Vw 253 (819)
.|++++.+ .+.+|
T Consensus 445 ~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 445 GLLSADKQKAVTLW 458 (459)
T ss_pred hhhcccCCcceEec
Confidence 99988766 46666
No 102
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.5e-22 Score=216.91 Aligned_cols=232 Identities=24% Similarity=0.479 Sum_probs=205.7
Q ss_pred eccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003445 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK 92 (819)
Q Consensus 13 ~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~ 92 (819)
++|...|.|++.++ +++||++|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....+++++.|+.|++|+++...
T Consensus 199 ~~h~keil~~avS~-Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s 277 (479)
T KOG0299|consen 199 KGHVKEILTLAVSS-DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS 277 (479)
T ss_pred ccccceeEEEEEcC-CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence 48999999999999 78899999999999999999999999999999999999998888889999999999999999999
Q ss_pred EEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003445 93 IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDL 172 (819)
Q Consensus 93 ~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl 172 (819)
.+.++.+|.+.|..|.-..-++.+-+|+.|+++++|++. ......|.+|.+.+.|++|-.+ ..+++|+.+|.|.+|++
T Consensus 278 ~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 278 YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSL 355 (479)
T ss_pred HHHHHhCCccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeee
Confidence 999999999999999998888888888899999999994 3445567888989999999854 57999999999999999
Q ss_pred CCCeEEEEEec-C-----------CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC----eEEEEeCCCCCCeeEEEEe
Q 003445 173 TAGKLLHDFKC-H-----------EGQIQCIDFHPHEFLLATGSADRTVKFWDLETF----ELIGSAGPETSGVRCLTFN 236 (819)
Q Consensus 173 ~t~~~i~~~~~-h-----------~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~----~~l~~~~~~~~~I~sl~fs 236 (819)
...++++.... | ...|++++..|...++|+|+.+|.|++|-+..+ +++..+. ..+.|++++|+
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~ 434 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFS 434 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEc
Confidence 99988887652 2 126899999999999999999999999999876 4455554 56889999999
Q ss_pred CCCCEEEEEECC
Q 003445 237 PDGRTLLCGLHE 248 (819)
Q Consensus 237 pdg~~Lasgs~d 248 (819)
++|+.+++|...
T Consensus 435 ~sgk~ivagiGk 446 (479)
T KOG0299|consen 435 NSGKRIVAGIGK 446 (479)
T ss_pred cCCCEEEEeccc
Confidence 999988888554
No 103
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=2.8e-22 Score=223.37 Aligned_cols=240 Identities=23% Similarity=0.450 Sum_probs=216.1
Q ss_pred EEEeccCCCEEE-EEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003445 10 QEFVAHSSTVNC-LKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (819)
Q Consensus 10 ~~~~~H~~~V~~-lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (819)
..|++|.+.|.+ ++|.+.++..+++|+.|..|.+|......++..+.+|...|.|+....++. +++|+.|.++++|-.
T Consensus 51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~ 129 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI 129 (745)
T ss_pred eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc
Confidence 557889998888 888864555699999999999999999999999999999999999888887 889999999999975
Q ss_pred CCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003445 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVK 168 (819)
Q Consensus 89 ~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~ 168 (819)
+++...+.+|...|+++.+-|.+ .+++|+.|.+|++|.- +++++++.+|.+.|+.+++-+++ .|++++.||.|+
T Consensus 130 --~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir 203 (745)
T KOG0301|consen 130 --GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIR 203 (745)
T ss_pred --hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEE
Confidence 45566699999999999999987 8999999999999985 78899999999999999999775 488999999999
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC
Q 003445 169 LWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (819)
Q Consensus 169 IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (819)
+|++ +|+++.++.+|..-|+++...+++..++++++|++++||+.. ++.+.+......|+++.+-++|.+++.|+++
T Consensus 204 ~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG 280 (745)
T KOG0301|consen 204 LWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDG 280 (745)
T ss_pred EEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCc
Confidence 9999 799999999999999999988888899999999999999987 7888888788889999999999998888888
Q ss_pred CEEEEEecCCc
Q 003445 249 SLKVFSWEPIR 259 (819)
Q Consensus 249 ~I~Vwd~~~~~ 259 (819)
.++||..+..+
T Consensus 281 ~VrVfT~~k~R 291 (745)
T KOG0301|consen 281 RVRVFTVDKDR 291 (745)
T ss_pred eEEEEEecccc
Confidence 89999887543
No 104
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.4e-22 Score=212.35 Aligned_cols=279 Identities=16% Similarity=0.269 Sum_probs=232.4
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC--CCceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCe
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG--KPNAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAK 92 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~--~~~~i~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWDl~s~~ 92 (819)
.+.|+|+.|+| +..+|++|+.||.++||.+. ....+..+.-...+|.+.+|.|+|. .+++++....++.||+++++
T Consensus 213 ~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 36899999999 88899999999999999884 3345566666678999999999998 89999999999999999887
Q ss_pred EEEE--EcCCC-CCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 93 IVRT--LTGHR-SNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (819)
Q Consensus 93 ~i~~--l~~h~-~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~I 169 (819)
.... +.++. ..+.....++++++|+..+..|.|++....+++.+.+++ ..+.|..++|+.|++.|++.+.+|.|.+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 6433 33443 356677889999999999999999999999999999988 5677999999999999999999999999
Q ss_pred EECCCCeEEEEEecCCCCe--EEEEEeCCCCEEEEEECCCeEEEEECCC------CeEEEEeCCCCCCeeEEEEeCCCCE
Q 003445 170 WDLTAGKLLHDFKCHEGQI--QCIDFHPHEFLLATGSADRTVKFWDLET------FELIGSAGPETSGVRCLTFNPDGRT 241 (819)
Q Consensus 170 wDl~t~~~i~~~~~h~~~I--~sl~fspdg~~Lasgs~Dg~I~iwDl~~------~~~l~~~~~~~~~I~sl~fspdg~~ 241 (819)
||++...+++.|.. .+.| ++++.++++.|||+|+..|.|.|||..+ .+++..+......|+++.|++|+++
T Consensus 371 ~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qi 449 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQI 449 (514)
T ss_pred EecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhh
Confidence 99999999999874 3333 5778889999999999999999999754 4566666667788999999999999
Q ss_pred EEEEEC---CCEEEEEecCCceeeeeecc---ccceeEeEe-cCCCEEEEEEcCCeEEEEEec
Q 003445 242 LLCGLH---ESLKVFSWEPIRCHDAVDVG---WSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 242 Lasgs~---d~I~Vwd~~~~~~~~~~~~~---~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld 297 (819)
|+.++. +.+++-.+.....+.-++.. -..+.++.+ +.+.++|.|-.+|.|.+|.+.
T Consensus 450 LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 450 LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 997764 35888888776655544433 344566655 679999999999999999874
No 105
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.1e-21 Score=188.79 Aligned_cols=246 Identities=22% Similarity=0.434 Sum_probs=206.0
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce-----EEEecCCCCCeEEEEEcC----CCCEEEEEE-
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA-----ILSLSGHTSGIDSVSFDS----SEVLVAAGA- 78 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~-----i~~l~~h~~~V~~l~fsp----dg~~Lasgs- 78 (819)
...-+.|.+.|+|.+|+| .+.++++|+.|.+|++.-.+...+ -..+.-|.+.|..++|-. .+.+|++++
T Consensus 82 ~kr~khhkgsiyc~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga 160 (350)
T KOG0641|consen 82 CKRNKHHKGSIYCTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA 160 (350)
T ss_pred eeeccccCccEEEEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence 345567999999999999 778999999999999987643332 245677999999999954 345677654
Q ss_pred CCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEec-------CCCCeEEEEE
Q 003445 79 ASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG-------HTRGVNAIRF 151 (819)
Q Consensus 79 ~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~-------h~~~I~sl~f 151 (819)
.|..|++-|...|+..+.+.+|.+.|.++ ++-++-.|++|+.|.+|++||++-..++.++.. ..+.|.+++.
T Consensus 161 gdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 161 GDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred CcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence 36788888999999999999999999876 344588999999999999999999888887642 2356999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC----eEEEEeCCCC
Q 003445 152 TPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF----ELIGSAGPET 227 (819)
Q Consensus 152 spdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~----~~l~~~~~~~ 227 (819)
.|.|++|++|-.|....+||++.++.++.|..|...|.|+.|+|...||++++.|..|++-|++.. -.+.....|.
T Consensus 240 dpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehk 319 (350)
T KOG0641|consen 240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHK 319 (350)
T ss_pred CCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEecc
Confidence 999999999999999999999999999999999999999999999999999999999999998742 1234456678
Q ss_pred CCeeEEEEeCCCCEEEEEECC-CEEEEEec
Q 003445 228 SGVRCLTFNPDGRTLLCGLHE-SLKVFSWE 256 (819)
Q Consensus 228 ~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~ 256 (819)
..+..+.|+|..-.+++.+.+ ...+|.++
T Consensus 320 dk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 320 DKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CceEEEEecCccceeeeccCcceEEEeccC
Confidence 888899999988777766655 68888764
No 106
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.6e-21 Score=200.12 Aligned_cols=284 Identities=19% Similarity=0.315 Sum_probs=216.8
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce-----EEEecCCCCCeEEEEEcCCCCEEEE-EECC
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA-----ILSLSGHTSGIDSVSFDSSEVLVAA-GAAS 80 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~-----i~~l~~h~~~V~~l~fspdg~~Las-gs~D 80 (819)
+.+..+++|.+.|+|++|+. +|.+|+|++.|+.|+||++.+... +.. .-.-+-.+.+.|.||.+-++. .-..
T Consensus 77 l~~~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 77 LNVSVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred hhhhhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccC
Confidence 34567899999999999998 788999999999999999865321 111 111234678999999875544 4455
Q ss_pred CeEEEEECCC---CeEEEE---------EcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEE
Q 003445 81 GTIKLWDLEE---AKIVRT---------LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNA 148 (819)
Q Consensus 81 G~I~IWDl~s---~~~i~~---------l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~s 148 (819)
.++++|.+.. |..... -..|.-.+..+-....+.+|++++.|..|.+|+++ |+.+..+......-+.
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD 233 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc
Confidence 6899997642 221111 12345566666666678899999999999999998 8888888877777778
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECC---CC-----eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC---
Q 003445 149 IRFTPDGRWVVSGGEDNTVKLWDLT---AG-----KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF--- 217 (819)
Q Consensus 149 l~fspdg~~L~sgs~Dg~I~IwDl~---t~-----~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~--- 217 (819)
.+.+|+|+++++++....|++|..- .| ..+..+++|...|..++|+++...+++.+.||++++||++-.
T Consensus 234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence 8999999999999999999999863 22 345678899999999999999999999999999999998531
Q ss_pred ----eEEEEe----CCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeeee-eccccceeEeEe-cCCCEEEEEEc
Q 003445 218 ----ELIGSA----GPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAV-DVGWSRLSDLNV-HEGKLLGCSYN 287 (819)
Q Consensus 218 ----~~l~~~----~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~-~~~~s~i~~l~~-~dg~lLa~~~~ 287 (819)
+.+... ....+....+.++|.|+.|+.+....+++|.-+.++....+ +.+...|..+.+ .+|++++++++
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence 122221 11233445899999999999998889999999988776655 566677888877 68899988764
Q ss_pred CCeEEEE
Q 003445 288 QSCVGVW 294 (819)
Q Consensus 288 Dg~V~IW 294 (819)
..+++.
T Consensus 394 -r~vrv~ 399 (420)
T KOG2096|consen 394 -RYVRVI 399 (420)
T ss_pred -eeeeee
Confidence 456665
No 107
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=6e-21 Score=216.31 Aligned_cols=290 Identities=20% Similarity=0.318 Sum_probs=245.9
Q ss_pred cccceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCe
Q 003445 4 KRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGT 82 (819)
Q Consensus 4 kr~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~ 82 (819)
+....+.+|+++...|+++.-+| --.+++.|..+|+|.|+++..++.+.+++...+.|+.+.|..||. ++++|+..|.
T Consensus 190 rt~K~v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~ 268 (910)
T KOG1539|consen 190 RTGKVVYTFQEFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGD 268 (910)
T ss_pred ccCcEEEEecccccceeEeccCC-cceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCce
Confidence 45567789999999999999999 677999999999999999999999999995569999999999987 5666777799
Q ss_pred EEEEECCCCeEEEEEc-----------------------------------------------C----------------
Q 003445 83 IKLWDLEEAKIVRTLT-----------------------------------------------G---------------- 99 (819)
Q Consensus 83 I~IWDl~s~~~i~~l~-----------------------------------------------~---------------- 99 (819)
+.+||++..+.+..+. |
T Consensus 269 m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~ 348 (910)
T KOG1539|consen 269 MAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGH 348 (910)
T ss_pred EEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcE
Confidence 9999986432211100 0
Q ss_pred --------------------------------------------------------------------------------
Q 003445 100 -------------------------------------------------------------------------------- 99 (819)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (819)
T Consensus 349 ~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~ 428 (910)
T KOG1539|consen 349 FILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWN 428 (910)
T ss_pred EEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEe
Confidence
Q ss_pred ------------CC------CCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE---ecCCCCeEEEEEcCCCCEE
Q 003445 100 ------------HR------SNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY---KGHTRGVNAIRFTPDGRWV 158 (819)
Q Consensus 100 ------------h~------~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~---~~h~~~I~sl~fspdg~~L 158 (819)
+. ..+++++.++.|++.+.|...|.|-+|++++|-....| ..|..+|+.++...-++.+
T Consensus 429 ~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~ 508 (910)
T KOG1539|consen 429 FRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLL 508 (910)
T ss_pred ccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceE
Confidence 11 23455666666777788888888888888888777777 4799999999999989999
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCC
Q 003445 159 VSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPD 238 (819)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspd 238 (819)
++++.+|.+++||......+..++. ...+.++..+....+++.+..|-.|.++|..+.+.+..+.+|...|++++||||
T Consensus 509 vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D 587 (910)
T KOG1539|consen 509 VSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD 587 (910)
T ss_pred EEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCC
Confidence 9999999999999998888877773 567889999998889999999999999999999999999999999999999999
Q ss_pred CCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcC-CeEEEEE
Q 003445 239 GRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQ-SCVGVWV 295 (819)
Q Consensus 239 g~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~D-g~V~IW~ 295 (819)
|++|++++.| .|++||+.++.+++.+.........-..++|.+||+...| ..|++|.
T Consensus 588 grWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 588 GRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred CcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 9999998876 6999999999999998877766666666999999999888 7899994
No 108
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=9.6e-22 Score=218.22 Aligned_cols=298 Identities=17% Similarity=0.298 Sum_probs=243.3
Q ss_pred cccceEEEEeccCCCEEEEEEeeCC----------CcEEEEEeCCCeEEEEECCCCceEEE-------------------
Q 003445 4 KRAYKLQEFVAHSSTVNCLKIGRKS----------SRVLVTGGEDHKVNLWAIGKPNAILS------------------- 54 (819)
Q Consensus 4 kr~~kl~~~~~H~~~V~~lafsp~~----------~~~Latgs~Dg~V~IWdl~~~~~i~~------------------- 54 (819)
+|..+...+..|+..|+.+.--|-+ ...++|++.|++|++|++..+..-..
T Consensus 357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~ 436 (1080)
T KOG1408|consen 357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDST 436 (1080)
T ss_pred ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCc
Confidence 4667778889999999999876611 12489999999999999864211000
Q ss_pred ------------------ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecC---C
Q 003445 55 ------------------LSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPF---G 113 (819)
Q Consensus 55 ------------------l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~---g 113 (819)
..+....+.+++.+|++++|++|..-|.|++|++..-+....+..|...|.|+.|+-- .
T Consensus 437 ~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~ 516 (1080)
T KOG1408|consen 437 QQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTN 516 (1080)
T ss_pred hhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhh
Confidence 0112347999999999999999999999999999999999999999999999999752 4
Q ss_pred CEEEEEECCCcEEEEECCC-CeEEEEEecCCCCeEEEEEcCCC--CEEEEEECCCeEEEEECCCCeEEEEEe-----cCC
Q 003445 114 EFFASGSLDTNLKIWDIRK-KGCIHTYKGHTRGVNAIRFTPDG--RWVVSGGEDNTVKLWDLTAGKLLHDFK-----CHE 185 (819)
Q Consensus 114 ~~Lasgs~Dg~I~IwDi~t-~~~i~~~~~h~~~I~sl~fspdg--~~L~sgs~Dg~I~IwDl~t~~~i~~~~-----~h~ 185 (819)
++||+++.|..|++||+.. -..++++.+|...|+++.|--.| ..+++++.|..|.+--.+....-..|. ...
T Consensus 517 kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~k 596 (1080)
T KOG1408|consen 517 KLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSK 596 (1080)
T ss_pred HhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccccccc
Confidence 6899999999999999864 45678899999999999998876 678899999876654333211111222 124
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC---CCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCcee
Q 003445 186 GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP---ETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCH 261 (819)
Q Consensus 186 ~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~---~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~ 261 (819)
..++.|+..|..+++++++.|+.|+|||++++++...|++ |.+....+...|.|-||++...| .+.+||+-+++|.
T Consensus 597 tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcv 676 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECV 676 (1080)
T ss_pred ceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhh
Confidence 5689999999999999999999999999999999988865 45778889999999999987665 7999999999999
Q ss_pred eeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCCce
Q 003445 262 DAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRI 301 (819)
Q Consensus 262 ~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~~ 301 (819)
...-.+...++.+.+ .|-+-|++.+.||+|.||.+....+
T Consensus 677 A~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~mi 717 (1080)
T KOG1408|consen 677 AQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTMI 717 (1080)
T ss_pred hhhcCcchheeeeeecccchhheeecCCceEEEEECchhHh
Confidence 988888888888877 5669999999999999999887444
No 109
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3e-21 Score=221.03 Aligned_cols=275 Identities=17% Similarity=0.245 Sum_probs=223.2
Q ss_pred eccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC-ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 003445 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA 91 (819)
Q Consensus 13 ~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~-~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~ 91 (819)
.+|...-+.++|.| ++.+|++++.||.|++|+.... +....+..+...|.+++.. +.+|++|+.+++|.+|.+.++
T Consensus 10 yaht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcC-CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCC
Confidence 57999999999999 5568999999999999997655 4444444477788888764 448999999999999999988
Q ss_pred eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (819)
Q Consensus 92 ~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwD 171 (819)
+.-..+....-++.+++|+.+|+++|.|+.|-.|++.+..+......+.+|..+|.++.|+|.+++|++.+-||.|++||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 77666666778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecC--------CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC--CCCCeeEEEEeCCCCE
Q 003445 172 LTAGKLLHDFKCH--------EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP--ETSGVRCLTFNPDGRT 241 (819)
Q Consensus 172 l~t~~~i~~~~~h--------~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~--~~~~I~sl~fspdg~~ 241 (819)
+.++.+.+.+.+- ...+..++|+|+|..|+....|+.|++|+..++.....+.. +...+.+++|+|.|+|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 9998877665431 23467889999988888888999999999999998887754 3445899999999999
Q ss_pred EEEEECC-CEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEE
Q 003445 242 LLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVW 294 (819)
Q Consensus 242 Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW 294 (819)
||+++-+ .|.|||+++...+ .....+.++.+ ++...+.+-...|...+|
T Consensus 247 iAAs~~~g~I~vWnv~t~~~~----~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 247 IAASTLDGQILVWNVDTHERH----EFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EeeeccCCcEEEEecccchhc----cccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9988765 6999999973321 22233444444 344555444444444444
No 110
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.89 E-value=2.5e-22 Score=205.32 Aligned_cols=250 Identities=22% Similarity=0.412 Sum_probs=211.2
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec--CCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS--GHTSGIDSVSFDSSEVLVAAGAASGTI 83 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~--~h~~~V~~l~fspdg~~Lasgs~DG~I 83 (819)
.--+++|..|.+.|+++.|+| ...+|++|+.|++|++||+.+......++ ....+|.++.|+|.|.+|++|..-.++
T Consensus 162 hPvIRTlYDH~devn~l~FHP-re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~ 240 (430)
T KOG0640|consen 162 HPVIRTLYDHVDEVNDLDFHP-RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTL 240 (430)
T ss_pred CceEeehhhccCcccceeecc-hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCce
Confidence 345789999999999999999 77899999999999999997654332222 356789999999999999999999999
Q ss_pred EEEECCCCeEEEEE---cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe-cCC-CCeEEEEEcCCCCEE
Q 003445 84 KLWDLEEAKIVRTL---TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK-GHT-RGVNAIRFTPDGRWV 158 (819)
Q Consensus 84 ~IWDl~s~~~i~~l---~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~-~h~-~~I~sl~fspdg~~L 158 (819)
++||+++.++...- .+|.+.|+++.+++.+++.++|+.||.|++||--+++|+.++. .|. ..|.+..|..+|+++
T Consensus 241 rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyi 320 (430)
T KOG0640|consen 241 RLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYI 320 (430)
T ss_pred eEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEE
Confidence 99999998876543 3688999999999999999999999999999999999998875 454 468999999999999
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecCC--C---CeEEEEEeCCCCEEEEEEC-CCeEEEEECCCCeEEEEe-CCCCCCee
Q 003445 159 VSGGEDNTVKLWDLTAGKLLHDFKCHE--G---QIQCIDFHPHEFLLATGSA-DRTVKFWDLETFELIGSA-GPETSGVR 231 (819)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~i~~~~~h~--~---~I~sl~fspdg~~Lasgs~-Dg~I~iwDl~~~~~l~~~-~~~~~~I~ 231 (819)
++.+.|..+++|.+.+++++..+.+.. + --+...|+..+.+++.-.+ .+.++-||.++...+..+ -+|.+.++
T Consensus 321 LsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R 400 (430)
T KOG0640|consen 321 LSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVR 400 (430)
T ss_pred eecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCce
Confidence 999999999999999999999987531 1 1345568877777777653 568999999997765543 57899999
Q ss_pred EEEEeCCCCEEEEEECC-CEEEEEec
Q 003445 232 CLTFNPDGRTLLCGLHE-SLKVFSWE 256 (819)
Q Consensus 232 sl~fspdg~~Lasgs~d-~I~Vwd~~ 256 (819)
++.-+|.+..++++++| ..++|--.
T Consensus 401 ~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 401 WIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred EEEeCCCCCceeeecccceeeeeeec
Confidence 99999999999999888 68888643
No 111
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.4e-21 Score=197.68 Aligned_cols=278 Identities=16% Similarity=0.228 Sum_probs=218.4
Q ss_pred EEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc
Q 003445 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT 98 (819)
Q Consensus 19 V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~ 98 (819)
-.|+.|++ -|.+||+|+.||.|.|||+.+...-..+.+|..+|.+++|+++|+.|++++.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEecc-CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 78999999 78899999999999999999999888999999999999999999999999999999999999999998887
Q ss_pred CCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCeEEEEEecC----CCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 99 GHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKGH----TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT 173 (819)
Q Consensus 99 ~h~~~I~sl~fsp~g~-~Lasgs~Dg~I~IwDi~t~~~i~~~~~h----~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~ 173 (819)
..++|+.+.|+|... .+++.-.+..-.+.++........-... +....+..|.+.|+++++|...|.+.++|..
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 788999999999654 3444434554555565542211111111 1122344688999999999999999999999
Q ss_pred CCeEEEEEecCC-CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEE---------EEeC--CCCCCeeEEEEeCCCCE
Q 003445 174 AGKLLHDFKCHE-GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI---------GSAG--PETSGVRCLTFNPDGRT 241 (819)
Q Consensus 174 t~~~i~~~~~h~-~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l---------~~~~--~~~~~I~sl~fspdg~~ 241 (819)
+.+++..++... ..|..+.|+..|.+|++.+.|+.|+.|+++.--.. +.++ .....-.+++|+.+|.|
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 999999988665 78999999999999999999999999998732111 1111 01233468899999999
Q ss_pred EEEEECC--CEEEEEecCCceeeeeeccc-cceeEeEecCCCEEEEEEcCCeEEEEEecC
Q 003445 242 LLCGLHE--SLKVFSWEPIRCHDAVDVGW-SRLSDLNVHEGKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 242 Lasgs~d--~I~Vwd~~~~~~~~~~~~~~-s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~ 298 (819)
+++|+.. .+.||.-..+...+++.... ..+-++.+|.-.-++.+-..|.|+||....
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVVQ 323 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEeec
Confidence 9988765 47777777777777776555 455666676666667777999999997654
No 112
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=8.5e-20 Score=195.83 Aligned_cols=256 Identities=14% Similarity=0.185 Sum_probs=197.2
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG-AASGTIKLW 86 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasg-s~DG~I~IW 86 (819)
.++.+..|. .+.+++|+|++..++++++.++.|++||..+++....+..+.. +..++|+|+++.++++ +.++.|++|
T Consensus 23 ~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~ 100 (300)
T TIGR03866 23 VTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVI 100 (300)
T ss_pred eEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEE
Confidence 455666554 4778999996555557778899999999998888877765543 5788999999977654 568999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCC-cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CC
Q 003445 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT-NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-ED 164 (819)
Q Consensus 87 Dl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg-~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs-~D 164 (819)
|+.+++.+..+.. ...+.+++|+|++.++++++.++ .+.+||..+++....+.. .....+++|+|+|++|++++ .+
T Consensus 101 d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~ 178 (300)
T TIGR03866 101 DIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIG 178 (300)
T ss_pred ECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCC
Confidence 9999888877763 34467899999999999988765 467789988877665543 33467899999999886554 58
Q ss_pred CeEEEEECCCCeEEEEEecCC-----C--CeEEEEEeCCCCEEEEE-ECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEe
Q 003445 165 NTVKLWDLTAGKLLHDFKCHE-----G--QIQCIDFHPHEFLLATG-SADRTVKFWDLETFELIGSAGPETSGVRCLTFN 236 (819)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~h~-----~--~I~sl~fspdg~~Lasg-s~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fs 236 (819)
+.|++||+.+++.+..+..+. . ....+.|+|++++++++ +.++.+.+||+++++.+..+. +...+.+++|+
T Consensus 179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~ 257 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFT 257 (300)
T ss_pred CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEEC
Confidence 999999999998877665321 1 23568899999986554 456789999999988776553 34578999999
Q ss_pred CCCCEEEEEE--CCCEEEEEecCCceeeeeeccc
Q 003445 237 PDGRTLLCGL--HESLKVFSWEPIRCHDAVDVGW 268 (819)
Q Consensus 237 pdg~~Lasgs--~d~I~Vwd~~~~~~~~~~~~~~ 268 (819)
|+|++|+++. ++.|.+||.++.++...+..+.
T Consensus 258 ~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 291 (300)
T TIGR03866 258 PDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGR 291 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccc
Confidence 9999998764 4579999999998877776553
No 113
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.9e-20 Score=207.14 Aligned_cols=287 Identities=18% Similarity=0.261 Sum_probs=225.9
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc-eEEEecCC-CCCeEEEEEcCCCCEEEEEECCCeE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-AILSLSGH-TSGIDSVSFDSSEVLVAAGAASGTI 83 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~-~i~~l~~h-~~~V~~l~fspdg~~Lasgs~DG~I 83 (819)
.++.+.+..-...|.|+||+.+ .+.||.+-.||.|.||++...- +...+.++ ...|.+++|++.++ |++.+.+|.|
T Consensus 15 vhrcrf~d~~Ps~I~slA~s~k-S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~R-LFS~g~sg~i 92 (691)
T KOG2048|consen 15 VHRCRFVDYKPSEIVSLAYSHK-SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGR-LFSSGLSGSI 92 (691)
T ss_pred EEEEEEEeeeccceEEEEEecc-CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCe-EEeecCCceE
Confidence 3444555556789999999984 4569999999999999997643 33455555 45899999996655 5577789999
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEE--EEecCCCCeEEEEEcCCCCEEEEE
Q 003445 84 KLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH--TYKGHTRGVNAIRFTPDGRWVVSG 161 (819)
Q Consensus 84 ~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~--~~~~h~~~I~sl~fspdg~~L~sg 161 (819)
.-||+.+++....+....+.|++++.+|.+..++.|+.||.++.+++..++... .+....+.|.++.|+|++..|+.|
T Consensus 93 ~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~G 172 (691)
T KOG2048|consen 93 TEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGG 172 (691)
T ss_pred EEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEec
Confidence 999999999999999999999999999999999999999988888887776543 334456889999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEEe-----c---CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEE
Q 003445 162 GEDNTVKLWDLTAGKLLHDFK-----C---HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCL 233 (819)
Q Consensus 162 s~Dg~I~IwDl~t~~~i~~~~-----~---h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl 233 (819)
+.||.|++||...+..++... . ...-|+++.|-.++ .|++|...|+|.+||...+.+++.+..|...|.++
T Consensus 173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~L 251 (691)
T KOG2048|consen 173 SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLAL 251 (691)
T ss_pred ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEE
Confidence 999999999999988776221 1 12237888887554 89999999999999999999999999999999999
Q ss_pred EEeCCCCEEEEEECC-CEEEEEecCCceee----eeeccccceeEeEecCCCEEEEEEcCCeEEEEEe
Q 003445 234 TFNPDGRTLLCGLHE-SLKVFSWEPIRCHD----AVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 296 (819)
Q Consensus 234 ~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~----~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~l 296 (819)
+..+++..+++++-| .+.-|...+.+..- ....+...+..+...+. .+.+|+.|..+.+-..
T Consensus 252 av~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 252 AVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-ALISGGRDFTLAICSS 318 (691)
T ss_pred EEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-eEEecceeeEEEEccc
Confidence 999998888877666 56666666654311 12344445555555444 7778888877766543
No 114
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=8.3e-22 Score=211.57 Aligned_cols=221 Identities=21% Similarity=0.348 Sum_probs=198.1
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC------
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE------ 89 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~------ 89 (819)
.++|.|++-+| .+.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+.|+.+|++|+.||.|.+|.+-
T Consensus 81 Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 81 PGPVHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred ccceeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 57899999999 78888888899999999999999999999999999999999999999999999999999873
Q ss_pred ---CCeEEEEEcCCCCCeEEEEEecCC--CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003445 90 ---EAKIVRTLTGHRSNCISVDFHPFG--EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (819)
Q Consensus 90 ---s~~~i~~l~~h~~~I~sl~fsp~g--~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~D 164 (819)
+-++++.+..|.-+|+++...+.| .++++++.|.++++||+..+..+.++. ....+.+++.+|-++.+++|+.+
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~ 238 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEE 238 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCc
Confidence 346788999999999999887643 589999999999999999999888876 56789999999999999999999
Q ss_pred CeEEEEECCC----------------CeEEEEEecCCC--CeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC
Q 003445 165 NTVKLWDLTA----------------GKLLHDFKCHEG--QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE 226 (819)
Q Consensus 165 g~I~IwDl~t----------------~~~i~~~~~h~~--~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~ 226 (819)
|.|.+.++.. +..+..+.+|.+ .|+|++++-||.+|++|+.||.+++||+.+.+++.++...
T Consensus 239 G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~ 318 (476)
T KOG0646|consen 239 GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS 318 (476)
T ss_pred ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh
Confidence 9999988743 234556778887 9999999999999999999999999999999999888877
Q ss_pred CCCeeEEEEeCC
Q 003445 227 TSGVRCLTFNPD 238 (819)
Q Consensus 227 ~~~I~sl~fspd 238 (819)
.++|+.+.+.|-
T Consensus 319 kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 319 KGPVTNLQINPL 330 (476)
T ss_pred ccccceeEeecc
Confidence 788999988664
No 115
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=6.3e-21 Score=195.98 Aligned_cols=265 Identities=18% Similarity=0.261 Sum_probs=211.7
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVR 95 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~ 95 (819)
.+.|..+.|+| .+..|++++.||.+++|++........+. |..++.+++|.+ ...+++|+.||.|+.+|+.++....
T Consensus 13 ~d~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 13 EDGISSVKFSP-SSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred hhceeeEEEcC-cCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCccee
Confidence 57899999998 45556667799999999998775555555 899999999986 5578899999999999999887654
Q ss_pred EEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 003445 96 TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG 175 (819)
Q Consensus 96 ~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~ 175 (819)
+..|...|.|+.+.+....+++|++|++|++||.+.......+.. ...|.++... |+.|+.|+.+..+.+||+++.
T Consensus 90 -igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 90 -IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred -eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEcccc
Confidence 445999999999999889999999999999999998766666653 3478888876 778999999999999999987
Q ss_pred eEEEEEe--cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC----eEEEEeCCC---------CCCeeEEEEeCCCC
Q 003445 176 KLLHDFK--CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF----ELIGSAGPE---------TSGVRCLTFNPDGR 240 (819)
Q Consensus 176 ~~i~~~~--~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~----~~l~~~~~~---------~~~I~sl~fspdg~ 240 (819)
....+.. .....+.|+++.|++.-+++++-||.|.+=.++.. ..-..++.| ..+|++|+|+|--.
T Consensus 166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~ 245 (323)
T KOG1036|consen 166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG 245 (323)
T ss_pred cchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence 6544332 23457899999999888999999999887666543 222334333 24789999999988
Q ss_pred EEEEEECCC-EEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEc
Q 003445 241 TLLCGLHES-LKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYN 287 (819)
Q Consensus 241 ~Lasgs~d~-I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~ 287 (819)
.|++|+.|+ +.+||..+.+.+..+..-...+..+.+ .+|..||+++.
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 899887765 889999988877766555455666666 78999988764
No 116
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=8.7e-22 Score=224.85 Aligned_cols=207 Identities=20% Similarity=0.394 Sum_probs=179.9
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKL 85 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~I 85 (819)
..+.+|+||.+.|..|.|+. .++|++++.|.+|+||++...+++..|. |.+.|+||+|+| |.+||++|+-||.|+|
T Consensus 360 kP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRi 436 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRL 436 (712)
T ss_pred cchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEE
Confidence 45678999999999999995 4589999999999999999999999988 999999999999 8899999999999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe---------cCCCCeEEEEEcC-CC
Q 003445 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK---------GHTRGVNAIRFTP-DG 155 (819)
Q Consensus 86 WDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~---------~h~~~I~sl~fsp-dg 155 (819)
|++...+.+.....+ .-|++++|.|+|++.++|+.+|.+++|+....+....+. .|. .|+.+.|.| +.
T Consensus 437 WsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~ 514 (712)
T KOG0283|consen 437 WSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDP 514 (712)
T ss_pred eecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCC
Confidence 999988887666544 889999999999999999999999999998877665442 123 799999998 33
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEecCCC--CeEEEEEeCCCCEEEEEECCCeEEEEECCCCe
Q 003445 156 RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEG--QIQCIDFHPHEFLLATGSADRTVKFWDLETFE 218 (819)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~--~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~ 218 (819)
..+++.+.|..|+|||.++..++..|+++.. .-....|+.||++|+++++|..|++|++....
T Consensus 515 ~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 515 DEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred CeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 4577788999999999999999999987432 33567899999999999999999999987543
No 117
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=7.2e-21 Score=193.61 Aligned_cols=283 Identities=19% Similarity=0.346 Sum_probs=214.1
Q ss_pred eccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce----------EE-----EecCCCCCeEEEEEcC-CCCEEEE
Q 003445 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA----------IL-----SLSGHTSGIDSVSFDS-SEVLVAA 76 (819)
Q Consensus 13 ~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~----------i~-----~l~~h~~~V~~l~fsp-dg~~Las 76 (819)
..|.+.|+.+.+.+..++|+++|+.||.|.+||+++... .. .-.+|.-.|..+.|-| |.-++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 358999999999999999999999999999999965431 11 0125888999999998 6668889
Q ss_pred EECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCC---CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC
Q 003445 77 GAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG---EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP 153 (819)
Q Consensus 77 gs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g---~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fsp 153 (819)
++.|.++++||..+-+....|+ ..+.|.+-+|+|-. .++|+|..|-.|++.|+..|.+-+++.+|.+.|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999999998888887 56778888888853 4788899999999999999999999999999999999999
Q ss_pred CCCE-EEEEECCCeEEEEECCCC-eEEEEE--------------ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 003445 154 DGRW-VVSGGEDNTVKLWDLTAG-KLLHDF--------------KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF 217 (819)
Q Consensus 154 dg~~-L~sgs~Dg~I~IwDl~t~-~~i~~~--------------~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~ 217 (819)
...| |++|+.||.|++||++.. .+...+ ..|.+.+..++|..++.++++.+.|..+++|+..+|
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 7776 568899999999999854 233322 246678999999999999999999999999999887
Q ss_pred eEEEE-eCC--CC---CCeeEEEEeCC-CCEEEEEECCCEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCC
Q 003445 218 ELIGS-AGP--ET---SGVRCLTFNPD-GRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQS 289 (819)
Q Consensus 218 ~~l~~-~~~--~~---~~I~sl~fspd-g~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg 289 (819)
..... +.. |. +.-..+. +.+ +-++..-.++++.++.+-.+.....++.+...+.+..+ ++=+...++..|+
T Consensus 279 ~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ 357 (397)
T KOG4283|consen 279 RNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNG 357 (397)
T ss_pred cccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCC
Confidence 63221 110 10 1101122 112 22222333456777777666666666666555544443 4446777888899
Q ss_pred eEEEEEec
Q 003445 290 CVGVWVVD 297 (819)
Q Consensus 290 ~V~IW~ld 297 (819)
.|..|...
T Consensus 358 ni~~w~p~ 365 (397)
T KOG4283|consen 358 NIYMWSPA 365 (397)
T ss_pred cccccccc
Confidence 99999763
No 118
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.8e-21 Score=199.26 Aligned_cols=255 Identities=24% Similarity=0.443 Sum_probs=217.6
Q ss_pred ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q 003445 50 NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWD 129 (819)
Q Consensus 50 ~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwD 129 (819)
+.+..+.||...|+.++.......+.+++.|.+.+||.+++++++.++.||.+.|.++.|++.+.++++++.|++..||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 44556789999999999988778999999999999999999999999999999999999999999999999999999995
Q ss_pred C------CC----------------------------------CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 130 I------RK----------------------------------KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (819)
Q Consensus 130 i------~t----------------------------------~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~I 169 (819)
. .. ..++..+.+|...|.+..|...|+.+++++.|.+-.+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 2 10 0145567889999999999999999999999999999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC-CeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC
Q 003445 170 WDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET-FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (819)
Q Consensus 170 wDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~-~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (819)
||+.+|+.+..+.+|....+.++-||..+++++.+.|.+.++||++. -..+..|++|...|+++.|.-|.+ +++|++|
T Consensus 299 wDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDD 377 (481)
T KOG0300|consen 299 WDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDD 377 (481)
T ss_pred eeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecCCC
Confidence 99999999999999999999999999999999999999999999974 345677999999999999998765 5666666
Q ss_pred -CEEEEEecCCce-eeeeeccccceeEeEecCC-CEEEEEEcCCeEEEEEecCCceeeeee
Q 003445 249 -SLKVFSWEPIRC-HDAVDVGWSRLSDLNVHEG-KLLGCSYNQSCVGVWVVDISRIEPYTI 306 (819)
Q Consensus 249 -~I~Vwd~~~~~~-~~~~~~~~s~i~~l~~~dg-~lLa~~~~Dg~V~IW~ld~~~~~p~~~ 306 (819)
.++|||+...+. +..+.. .+.+.-+.+..| .+++.--++..|++||+...++..+..
T Consensus 378 rTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPr 437 (481)
T KOG0300|consen 378 RTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPR 437 (481)
T ss_pred ceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCc
Confidence 799999988764 333333 234445555444 588888888999999999998876554
No 119
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.1e-21 Score=195.36 Aligned_cols=243 Identities=20% Similarity=0.351 Sum_probs=198.9
Q ss_pred eccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC---ceEEEecCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEE
Q 003445 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP---NAILSLSGHTSGIDSVSFDS--SEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 13 ~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~---~~i~~l~~h~~~V~~l~fsp--dg~~Lasgs~DG~I~IWD 87 (819)
..|.+.|..+.... -+..|+|++.|++|+|+.+.+. +.+.+|.||.++|..++|.. .|.+|++++.||+|.||.
T Consensus 8 t~H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 46888898888776 5677999999999999998654 56788999999999999955 799999999999999999
Q ss_pred CCCCeE--EEEEcCCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCC---eEEEEEecCCCCeEEEEEcCC---C--
Q 003445 88 LEEAKI--VRTLTGHRSNCISVDFHPF--GEFFASGSLDTNLKIWDIRKK---GCIHTYKGHTRGVNAIRFTPD---G-- 155 (819)
Q Consensus 88 l~s~~~--i~~l~~h~~~I~sl~fsp~--g~~Lasgs~Dg~I~IwDi~t~---~~i~~~~~h~~~I~sl~fspd---g-- 155 (819)
-+.++- ......|...|++++|-|. |-.|++++.||.|.|.+++.. ........|.-.|++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 887743 3455679999999999885 567999999999999998764 223445689999999999985 4
Q ss_pred ---------CEEEEEECCCeEEEEECCCCe--EEEEEecCCCCeEEEEEeCC----CCEEEEEECCCeEEEEECCCC-e-
Q 003445 156 ---------RWVVSGGEDNTVKLWDLTAGK--LLHDFKCHEGQIQCIDFHPH----EFLLATGSADRTVKFWDLETF-E- 218 (819)
Q Consensus 156 ---------~~L~sgs~Dg~I~IwDl~t~~--~i~~~~~h~~~I~sl~fspd----g~~Lasgs~Dg~I~iwDl~~~-~- 218 (819)
+.|++|+.|..|+||+...+. ....+.+|.+.|..++|.|. ..+||+++.||++.||-.+.- +
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 579999999999999998763 34457889999999999996 358999999999999987631 1
Q ss_pred -EEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEec
Q 003445 219 -LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWE 256 (819)
Q Consensus 219 -~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~ 256 (819)
....+......+..+.|+..|++|+++..+ .+.+|.-+
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 122234456789999999999999987655 57777643
No 120
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=4.5e-21 Score=200.91 Aligned_cols=242 Identities=25% Similarity=0.502 Sum_probs=193.0
Q ss_pred EEeccCCCEEEEEEeeC-CCcEEEEEeCCCeEEEEECC----------------CCceEEEecCCCCCeEEEEEcCCC-C
Q 003445 11 EFVAHSSTVNCLKIGRK-SSRVLVTGGEDHKVNLWAIG----------------KPNAILSLSGHTSGIDSVSFDSSE-V 72 (819)
Q Consensus 11 ~~~~H~~~V~~lafsp~-~~~~Latgs~Dg~V~IWdl~----------------~~~~i~~l~~h~~~V~~l~fspdg-~ 72 (819)
...+|.+.|+.+...+. +..+.++-++.|.|+||++. ..+++.++.+|...=++++|+|-. .
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 34568888888888775 34566777899999999973 235678889999999999999932 2
Q ss_pred EEEEEECCCeEEEEECCCCeEE---EEEcCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCC---eEEEEEecCCCC
Q 003445 73 LVAAGAASGTIKLWDLEEAKIV---RTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKK---GCIHTYKGHTRG 145 (819)
Q Consensus 73 ~Lasgs~DG~I~IWDl~s~~~i---~~l~~h~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~t~---~~i~~~~~h~~~ 145 (819)
.|++|..-+.|++|...++... ..+.+|...|-.++|+|.. ..|++|+.||+|+|||+|.+ .++.+ +.|.+.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sD 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSD 304 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCc
Confidence 4778888899999999887543 3466799999999999965 47999999999999999987 45544 889999
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCC---CeEEEEEecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCCe---
Q 003445 146 VNAIRFTPDGRWVVSGGEDNTVKLWDLTA---GKLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFE--- 218 (819)
Q Consensus 146 I~sl~fspdg~~L~sgs~Dg~I~IwDl~t---~~~i~~~~~h~~~I~sl~fspd-g~~Lasgs~Dg~I~iwDl~~~~--- 218 (819)
|+.|.|+.+..+|++|+.||+++|||++. ++++..|+.|..+|+++.|+|. ...|++++.|.+|.+||+..-.
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~e 384 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEE 384 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChh
Confidence 99999999888999999999999999985 5688999999999999999996 5688888999999999985311
Q ss_pred ----------------EEEEeCCCCCCeeEEEEeCCCC-EEEEEECCCEEEEE
Q 003445 219 ----------------LIGSAGPETSGVRCLTFNPDGR-TLLCGLHESLKVFS 254 (819)
Q Consensus 219 ----------------~l~~~~~~~~~I~sl~fspdg~-~Lasgs~d~I~Vwd 254 (819)
++.. ......+..+.|+++-. +|++...+++.||.
T Consensus 385 e~~~~a~~~L~dlPpQLLFV-HqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 385 EIDQEAAEGLQDLPPQLLFV-HQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred hhccccccchhcCCceeEEE-ecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 1111 11234577888888633 55555667787774
No 121
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5.8e-22 Score=223.01 Aligned_cols=231 Identities=24% Similarity=0.486 Sum_probs=192.9
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCC---CceEEEecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeE
Q 003445 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK---PNAILSLSGHTSGIDSVSFDSS-EVLVAAGAASGTIKLWDLEEAKI 93 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~---~~~i~~l~~h~~~V~~l~fspd-g~~Lasgs~DG~I~IWDl~s~~~ 93 (819)
.+..|+|+.-..++|||++..|.|.+||+.. .+.+..|..|...++++.|++. -.+|++|++||.|++||++..+-
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 4556788876788999999999999999977 5666778899999999999885 46899999999999999999999
Q ss_pred EEEEcCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 94 VRTLTGHRSNCISVDFHPF-GEFFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (819)
Q Consensus 94 i~~l~~h~~~I~sl~fsp~-g~~Lasgs~Dg~I~IwDi~t~-~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwD 171 (819)
..++.+....|..|.|+|. +.+|+++...|.+.+||+|.. ++...+.+|.++|.|+.|+|++.||++|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 9999999999999999994 678999999999999999975 46677889999999999999999999999999999999
Q ss_pred CCCCeE--EEEEecCCCCeEEEEEeCCC-CEEEEEE--CCCeEEEEECCC-CeEEEEeCCCCCCeeEEEEeCC-CCEEEE
Q 003445 172 LTAGKL--LHDFKCHEGQIQCIDFHPHE-FLLATGS--ADRTVKFWDLET-FELIGSAGPETSGVRCLTFNPD-GRTLLC 244 (819)
Q Consensus 172 l~t~~~--i~~~~~h~~~I~sl~fspdg-~~Lasgs--~Dg~I~iwDl~~-~~~l~~~~~~~~~I~sl~fspd-g~~Las 244 (819)
+.+++. +.++. ...+|.++.|-|.. ..||+++ .|-.|+|||++- .-+...+..|...++.++|... -..+.+
T Consensus 249 ~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 249 MTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred ccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEe
Confidence 986543 34443 35789999999974 4566665 477899999975 4456678889999999999763 334445
Q ss_pred EECCC
Q 003445 245 GLHES 249 (819)
Q Consensus 245 gs~d~ 249 (819)
++.|+
T Consensus 328 ~sKD~ 332 (839)
T KOG0269|consen 328 CSKDG 332 (839)
T ss_pred ecCcc
Confidence 55554
No 122
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.87 E-value=5.1e-21 Score=206.81 Aligned_cols=239 Identities=21% Similarity=0.370 Sum_probs=186.6
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEE------------EecCCCCCeEEEEEcCCC-CEEEEEECCC
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL------------SLSGHTSGIDSVSFDSSE-VLVAAGAASG 81 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~------------~l~~h~~~V~~l~fspdg-~~Lasgs~DG 81 (819)
....|++++|++.++. |++.+.....+|+|-...+... ..+||...++|.+|+|+. ..|++++.||
T Consensus 213 E~h~i~sl~ys~Tg~~-iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dg 291 (641)
T KOG0772|consen 213 ETHQINSLQYSVTGDQ-ILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDG 291 (641)
T ss_pred cccccceeeecCCCCe-EEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCC
Confidence 3457999999995555 4445555779999864333322 235799999999999965 5788999999
Q ss_pred eEEEEECCCCe-EEEEEc-----CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeE---EEEEecCCC--CeEEEE
Q 003445 82 TIKLWDLEEAK-IVRTLT-----GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC---IHTYKGHTR--GVNAIR 150 (819)
Q Consensus 82 ~I~IWDl~s~~-~i~~l~-----~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~---i~~~~~h~~--~I~sl~ 150 (819)
++++||+...+ ..+.++ +..-+++.++|+++|+.||+|+.||.|.+|+...... ...-+.|.. .|+||.
T Consensus 292 tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~ 371 (641)
T KOG0772|consen 292 TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSIS 371 (641)
T ss_pred cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEE
Confidence 99999997643 333332 3345789999999999999999999999999865432 233356776 899999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCC-eEEEEEecC--CCCeEEEEEeCCCCEEEEEEC------CCeEEEEECCCCeEEE
Q 003445 151 FTPDGRWVVSGGEDNTVKLWDLTAG-KLLHDFKCH--EGQIQCIDFHPHEFLLATGSA------DRTVKFWDLETFELIG 221 (819)
Q Consensus 151 fspdg~~L~sgs~Dg~I~IwDl~t~-~~i~~~~~h--~~~I~sl~fspdg~~Lasgs~------Dg~I~iwDl~~~~~l~ 221 (819)
|++||++|++-+.|+++++||++.. +++..+.+- ..+-+.++|+|+.++|++|.. .|+++|||..+...+.
T Consensus 372 FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ 451 (641)
T KOG0772|consen 372 FSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVY 451 (641)
T ss_pred eccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEE
Confidence 9999999999999999999999975 455554432 234578899999999999863 5789999999999999
Q ss_pred EeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEE
Q 003445 222 SAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFS 254 (819)
Q Consensus 222 ~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd 254 (819)
.+......|..+.|+|.=+.|++|+.+ .++||-
T Consensus 452 ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 452 KIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 998888889999999986666666555 577764
No 123
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.6e-21 Score=219.54 Aligned_cols=278 Identities=21% Similarity=0.383 Sum_probs=213.1
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC----ceEEEecCC---CCCeEEEEEcC-CCCEEEEEECCCeEEEEEC
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----NAILSLSGH---TSGIDSVSFDS-SEVLVAAGAASGTIKLWDL 88 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~----~~i~~l~~h---~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl 88 (819)
...+.+...++-. .++.++. ..+.||.+... .+...+... ...+..++|.. +.++|++++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~-qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDIN-QIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcc-eeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 3456667777444 4555543 45777776432 222222211 12466788864 5679999999999999999
Q ss_pred CC---CeEEEEEcCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEEC
Q 003445 89 EE---AKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVVSGGE 163 (819)
Q Consensus 89 ~s---~~~i~~l~~h~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fsp-dg~~L~sgs~ 163 (819)
.. .+.+..|..|...+.+++|++.. .+|++|+.||.|++||++..+...++.+....|..+.|+| .+..|+++.+
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecC
Confidence 87 66777899999999999999865 5799999999999999999999999998888999999999 6789999999
Q ss_pred CCeEEEEECCCC-eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeE--EEEeCCCCCCeeEEEEeCCCC
Q 003445 164 DNTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL--IGSAGPETSGVRCLTFNPDGR 240 (819)
Q Consensus 164 Dg~I~IwDl~t~-~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~--l~~~~~~~~~I~sl~fspdg~ 240 (819)
.|.+.+||++.. ++...+..|.++|.|+.|||++.+||+|+.|+.|+|||+.+.+. +.++. ...++.++.|-|...
T Consensus 198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~ 276 (839)
T KOG0269|consen 198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARS 276 (839)
T ss_pred CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCcc
Confidence 999999999964 46677889999999999999999999999999999999986543 33332 246799999999877
Q ss_pred EEE-EEE---CCCEEEEEecC-CceeeeeeccccceeEeEecC--CCEEEEEEcCCeEEEEEec
Q 003445 241 TLL-CGL---HESLKVFSWEP-IRCHDAVDVGWSRLSDLNVHE--GKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 241 ~La-sgs---~d~I~Vwd~~~-~~~~~~~~~~~s~i~~l~~~d--g~lLa~~~~Dg~V~IW~ld 297 (819)
+.+ +++ +-.|+|||+.. .-....+..+...+..+.+.. ...+-+++-||.|..-.++
T Consensus 277 ~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 277 YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred chhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 654 332 22599999864 445566677777777777744 5667788888877554444
No 124
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=8.4e-20 Score=197.06 Aligned_cols=281 Identities=19% Similarity=0.320 Sum_probs=218.2
Q ss_pred EEeccC-CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 11 EFVAHS-STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (819)
Q Consensus 11 ~~~~H~-~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (819)
.|+.+. .-|.|++|.+++. ++||..+|.|.||+....+..+....|.+.|.+++...+|.+|- |+.|..|..||-.
T Consensus 240 ~fek~ekk~Vl~v~F~engd--viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~ 316 (626)
T KOG2106|consen 240 IFEKREKKFVLCVTFLENGD--VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDN 316 (626)
T ss_pred ccccccceEEEEEEEcCCCC--EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecccc
Confidence 444443 4799999998443 89999999999999988887777779999999999999998775 9999999999831
Q ss_pred CC----------------------e------------------EEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q 003445 90 EA----------------------K------------------IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWD 129 (819)
Q Consensus 90 s~----------------------~------------------~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwD 129 (819)
-. . ......+|.+..+.++.+|+.+++++++.|+.+++|+
T Consensus 317 y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 317 YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN 396 (626)
T ss_pred ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc
Confidence 00 0 0111346888899999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeE
Q 003445 130 IRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTV 209 (819)
Q Consensus 130 i~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I 209 (819)
..+.+.+.. ...++.|+.|+|.| .++.|+..|...+.|..+...+..... ..+++++.|+|+|.+||.|+.|+.|
T Consensus 397 --~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~i 471 (626)
T KOG2106|consen 397 --DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHI 471 (626)
T ss_pred --CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeE
Confidence 555665544 45778999999999 899999999999999999776666665 8899999999999999999999999
Q ss_pred EEEECCCC-eEEEEe-CCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeee---eccccc-------------
Q 003445 210 KFWDLETF-ELIGSA-GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV---DVGWSR------------- 270 (819)
Q Consensus 210 ~iwDl~~~-~~l~~~-~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~---~~~~s~------------- 270 (819)
++|-+... ...... +.+..+|+.+.|++|+++|.+-+.| .|-.| .+..|.+.. ++.|..
T Consensus 472 yiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW--~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s 549 (626)
T KOG2106|consen 472 YIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW--KPSECKQITSVKDVKWATYTCTLGFEVFGGS 549 (626)
T ss_pred EEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE--ccccCcccceecceeeeeeEEEEEEEEeccc
Confidence 99998653 333332 3344899999999999999988766 46666 444443221 222221
Q ss_pred ----ee-EeEecCCCEEEEEEcCCeEEEEEecCCce
Q 003445 271 ----LS-DLNVHEGKLLGCSYNQSCVGVWVVDISRI 301 (819)
Q Consensus 271 ----i~-~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~ 301 (819)
+. ....++.+++++|.+.|.|++|...-.+.
T Consensus 550 ~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~ 585 (626)
T KOG2106|consen 550 DGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSP 585 (626)
T ss_pred CCchHHHhhhhhhhhhhhccccCceEEEEccccCCC
Confidence 11 11236789999999999999997654443
No 125
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.4e-20 Score=202.30 Aligned_cols=237 Identities=20% Similarity=0.385 Sum_probs=203.4
Q ss_pred eCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCE
Q 003445 36 GEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEF 115 (819)
Q Consensus 36 s~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~ 115 (819)
.....|.+|.+..........--.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+.+|...|+|+.|+-||.+
T Consensus 58 ~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~ 137 (476)
T KOG0646|consen 58 LKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSH 137 (476)
T ss_pred ccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcE
Confidence 44567899998766655544446788999999999999999989999999999999999999999999999999999999
Q ss_pred EEEEECCCcEEEEECC---------CCeEEEEEecCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCeEEEEEecC
Q 003445 116 FASGSLDTNLKIWDIR---------KKGCIHTYKGHTRGVNAIRFTPD--GRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184 (819)
Q Consensus 116 Lasgs~Dg~I~IwDi~---------t~~~i~~~~~h~~~I~sl~fspd--g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h 184 (819)
|++|+.||.|.+|++- +-++++.+..|.-+|+.+...+. ..+|++++.|.++++||+..|..+..+. .
T Consensus 138 iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-f 216 (476)
T KOG0646|consen 138 IITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-F 216 (476)
T ss_pred EEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-c
Confidence 9999999999999763 34578889999999999998764 3589999999999999999999988887 5
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC----------------eEEEEeCCCCC--CeeEEEEeCCCCEEEEEE
Q 003445 185 EGQIQCIDFHPHEFLLATGSADRTVKFWDLETF----------------ELIGSAGPETS--GVRCLTFNPDGRTLLCGL 246 (819)
Q Consensus 185 ~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~----------------~~l~~~~~~~~--~I~sl~fspdg~~Lasgs 246 (819)
...+.+++.+|-+..+++|+.+|.|.+.++.+. ..+..+.+|.+ .|+|++++-||..|++|+
T Consensus 217 p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd 296 (476)
T KOG0646|consen 217 PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD 296 (476)
T ss_pred CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence 788999999999999999999999999887542 23445667776 999999999999999998
Q ss_pred CC-CEEEEEecCCceeeeeeccccceeE
Q 003445 247 HE-SLKVFSWEPIRCHDAVDVGWSRLSD 273 (819)
Q Consensus 247 ~d-~I~Vwd~~~~~~~~~~~~~~s~i~~ 273 (819)
.+ .+.|||....+|++.+....+++..
T Consensus 297 ~dg~VcvWdi~S~Q~iRtl~~~kgpVtn 324 (476)
T KOG0646|consen 297 EDGKVCVWDIYSKQCIRTLQTSKGPVTN 324 (476)
T ss_pred CCCCEEEEecchHHHHHHHhhhccccce
Confidence 77 5999999999998877644444443
No 126
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.86 E-value=1.6e-20 Score=201.48 Aligned_cols=241 Identities=24% Similarity=0.431 Sum_probs=193.5
Q ss_pred CCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCe----------EEEEEcCCCCCeEEEEEecCCC-EEEEEECCCc
Q 003445 57 GHTSGIDSVSFDSSE-VLVAAGAASGTIKLWDLEEAK----------IVRTLTGHRSNCISVDFHPFGE-FFASGSLDTN 124 (819)
Q Consensus 57 ~h~~~V~~l~fspdg-~~Lasgs~DG~I~IWDl~s~~----------~i~~l~~h~~~I~sl~fsp~g~-~Lasgs~Dg~ 124 (819)
.|.+.|+.+.+-|+. .+|++++..+.|.|||..... +-..+.+|...-.+++|++... +|++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 488999999998866 467777889999999985321 2236788999889999998654 7999999999
Q ss_pred EEEEECCCCe-------EEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECC--CCeEEEEEecCCCCeEEEEEe
Q 003445 125 LKIWDIRKKG-------CIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLT--AGKLLHDFKCHEGQIQCIDFH 194 (819)
Q Consensus 125 I~IwDi~t~~-------~i~~~~~h~~~I~sl~fsp-dg~~L~sgs~Dg~I~IwDl~--t~~~i~~~~~h~~~I~sl~fs 194 (819)
|++||+.... ....+.+|...|..++|++ +...|++++.|+.+.|||+| +.++.....+|.+.|+|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 9999997532 3566889999999999999 56678899999999999999 566777788999999999999
Q ss_pred CC-CCEEEEEECCCeEEEEECCCC-eEEEEeCCCCCCeeEEEEeCCCC-EEEEEE-CCCEEEEEecCCcee---------
Q 003445 195 PH-EFLLATGSADRTVKFWDLETF-ELIGSAGPETSGVRCLTFNPDGR-TLLCGL-HESLKVFSWEPIRCH--------- 261 (819)
Q Consensus 195 pd-g~~Lasgs~Dg~I~iwDl~~~-~~l~~~~~~~~~I~sl~fspdg~-~Lasgs-~d~I~Vwd~~~~~~~--------- 261 (819)
|. +.+||+|+.|++|++||+++. +++..+..|...|.++.|+|+.. .|++++ ++.+.|||+......
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dg 361 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDG 361 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccC
Confidence 94 788999999999999999985 46888999999999999999855 455444 446999999753222
Q ss_pred -----eeeeccccceeEeEe--cCCCEEEEEEcCCeEEEEEec
Q 003445 262 -----DAVDVGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 262 -----~~~~~~~s~i~~l~~--~dg~lLa~~~~Dg~V~IW~ld 297 (819)
.+-..+...+.++.+ .+--.+++..+|+.+.||.+.
T Consensus 362 ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 362 PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 122344556666666 344677788899999999765
No 127
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.85 E-value=7.1e-21 Score=204.71 Aligned_cols=236 Identities=19% Similarity=0.391 Sum_probs=205.5
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEE--EecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL--SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI 93 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~--~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~ 93 (819)
.+-|+++.+.| +++-|++|++-.++.|||+....... .+..-.-.+++++.+||.++.++++.||.|.|||+.+...
T Consensus 465 dnyiRSckL~p-dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 465 DNYIRSCKLLP-DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred ccceeeeEecC-CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence 45688899999 67789999999999999997655433 3443345678899999999999999999999999999999
Q ss_pred EEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 94 VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT 173 (819)
Q Consensus 94 i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~ 173 (819)
++.|++|.+.+.||..+++|..|.+|+.|.+|+-||++++..+.... ..+.|.++-++|.+.||+.|-.++.+.+....
T Consensus 544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC
Confidence 99999999999999999999999999999999999999998776654 56789999999999999999999999988876
Q ss_pred CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEE
Q 003445 174 AGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKV 252 (819)
Q Consensus 174 t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~V 252 (819)
. ...+.+..|++.|.++.|.+.|+++++.+.|+.+..|...-|..+...+ ..+.|.++.++.|.+|+++|+.+ .-.|
T Consensus 623 k-p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 623 K-PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATV 700 (705)
T ss_pred C-ccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEE
Confidence 4 3445566789999999999999999999999999999999888887665 45779999999999999999887 5667
Q ss_pred EEe
Q 003445 253 FSW 255 (819)
Q Consensus 253 wd~ 255 (819)
|.+
T Consensus 701 YeV 703 (705)
T KOG0639|consen 701 YEV 703 (705)
T ss_pred EEE
Confidence 654
No 128
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=9.8e-20 Score=187.23 Aligned_cols=229 Identities=23% Similarity=0.360 Sum_probs=193.3
Q ss_pred eccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003445 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK 92 (819)
Q Consensus 13 ~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~ 92 (819)
..|..++.+++|.+ ...+++|+-||.|+.+|+.+++... +..|..+|.|+.+++....+++|+.|++|++||.....
T Consensus 51 ~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~ 127 (323)
T KOG1036|consen 51 FKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV 127 (323)
T ss_pred eecCCceeeeeccC--CceEEEeccCceEEEEEecCCccee-eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc
Confidence 35899999999985 4458999999999999998877665 44599999999999988899999999999999998766
Q ss_pred EEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 93 IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK--GHTRGVNAIRFTPDGRWVVSGGEDNTVKLW 170 (819)
Q Consensus 93 ~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~--~h~~~I~sl~fspdg~~L~sgs~Dg~I~Iw 170 (819)
....+.. ...|.++... ++.|++|+.|..+.+||+++.....+.. .-+-.+.|+++.|++.-+++++-||.|.+=
T Consensus 128 ~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE 204 (323)
T KOG1036|consen 128 VVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVE 204 (323)
T ss_pred ccccccc-CceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEE
Confidence 6655553 3478887776 8899999999999999999876543222 234578999999988889999999999887
Q ss_pred ECCCC----eEEEEEecCC---------CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeC
Q 003445 171 DLTAG----KLLHDFKCHE---------GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP 237 (819)
Q Consensus 171 Dl~t~----~~i~~~~~h~---------~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fsp 237 (819)
.+... +.-..|++|. .+|++|+|||-...||+|+.||.|.+||+.+.+.+..+......|..++|+.
T Consensus 205 ~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~ 284 (323)
T KOG1036|consen 205 YFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM 284 (323)
T ss_pred ccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc
Confidence 76655 4556677775 2689999999999999999999999999999999999888888899999999
Q ss_pred CCCEEEEEEC
Q 003445 238 DGRTLLCGLH 247 (819)
Q Consensus 238 dg~~Lasgs~ 247 (819)
+|..||+++.
T Consensus 285 dG~~LAia~s 294 (323)
T KOG1036|consen 285 DGSLLAIASS 294 (323)
T ss_pred CCCeEEEEec
Confidence 9999998864
No 129
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=7.6e-20 Score=195.94 Aligned_cols=290 Identities=18% Similarity=0.272 Sum_probs=216.4
Q ss_pred eEEEEeccCCCEEEEEEeeCCC-cEEEEEeCCCeEEEEECCC----CceEEEecCCCCCeEEEEEcCC-CCEEEEEECCC
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSS-RVLVTGGEDHKVNLWAIGK----PNAILSLSGHTSGIDSVSFDSS-EVLVAAGAASG 81 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~-~~Latgs~Dg~V~IWdl~~----~~~i~~l~~h~~~V~~l~fspd-g~~Lasgs~DG 81 (819)
.....+.|.+.|+|++|+|... .++++|+.-|+|-+||+.. ..-+..+..|..+|.++.|+|. ...+++.+.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 3456778999999999999655 7899999999999999942 2345667789999999999994 46888999999
Q ss_pred eEEEEECCCCeE--EEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeE-EEEEecCCCCeEEEEEcCC-CCE
Q 003445 82 TIKLWDLEEAKI--VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC-IHTYKGHTRGVNAIRFTPD-GRW 157 (819)
Q Consensus 82 ~I~IWDl~s~~~--i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~-i~~~~~h~~~I~sl~fspd-g~~ 157 (819)
+|++-|++.+.. +..+......+..++|+.+...++.+..=|...+||.++++. ...+.-|...|..++++|. ..+
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 999999987643 333333445677888988888888888888999999998765 5666778889999999994 457
Q ss_pred EEEEECCCeEEEEECCCCe--E--EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECC----CCeEEEEeCCCC--
Q 003445 158 VVSGGEDNTVKLWDLTAGK--L--LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE----TFELIGSAGPET-- 227 (819)
Q Consensus 158 L~sgs~Dg~I~IwDl~t~~--~--i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~----~~~~l~~~~~~~-- 227 (819)
|++++.|++++|||++.-. . +.....|...|.+..|+|.+..|++.+.|..|+|||.. ...+...+....
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t 417 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRT 417 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcc
Confidence 8899999999999998532 1 22233589999999999998889999999999999984 334444433221
Q ss_pred -C--CeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeeccc-cceeEe-Eec-CCC-EEEEEEcCCeEEEEEec
Q 003445 228 -S--GVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGW-SRLSDL-NVH-EGK-LLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 228 -~--~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~-s~i~~l-~~~-dg~-lLa~~~~Dg~V~IW~ld 297 (819)
. ......|.|+..++++|..- .|-||+-+.++....+.... ..|..+ .+| -+. +++.+...|.|+||--+
T Consensus 418 ~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 418 GRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 1 23456899999999998654 59999988877443322221 122222 223 233 56666677888888544
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.2e-19 Score=207.95 Aligned_cols=243 Identities=20% Similarity=0.314 Sum_probs=202.6
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe
Q 003445 56 SGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA-KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG 134 (819)
Q Consensus 56 ~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~-~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~ 134 (819)
.+|+.+.+.|+|.++|.+|++++.||.|++|+.... +...++..+...|.+++.. +++|++|+.+++|.+|.+..++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 468999999999999999999999999999997665 3334444467777777664 6699999999999999999887
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEC
Q 003445 135 CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (819)
Q Consensus 135 ~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl 214 (819)
.-..+....-++++++|+.+|++++.|++|-.|++.++.+......+.+|.++|.++.|+|++.+||+.+.||.|++||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 65556666788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCC--------CCCeeEEEEeCC-CCEEEEEECCCEEEEEecCCceeeeeec--cccceeEeEe-cCCCEE
Q 003445 215 ETFELIGSAGPE--------TSGVRCLTFNPD-GRTLLCGLHESLKVFSWEPIRCHDAVDV--GWSRLSDLNV-HEGKLL 282 (819)
Q Consensus 215 ~~~~~l~~~~~~--------~~~I~sl~fspd-g~~Lasgs~d~I~Vwd~~~~~~~~~~~~--~~s~i~~l~~-~dg~lL 282 (819)
+++.+...+..- ...+..++|+|+ |.+++.+.++.+++|+-+.......+.. ..+.+.++.+ ++|++|
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi 247 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI 247 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE
Confidence 998876654321 334577899999 6666777888999998877665554432 2233556655 889999
Q ss_pred EEEEcCCeEEEEEecCCc
Q 003445 283 GCSYNQSCVGVWVVDISR 300 (819)
Q Consensus 283 a~~~~Dg~V~IW~ld~~~ 300 (819)
|+++.||.|.||++++..
T Consensus 248 AAs~~~g~I~vWnv~t~~ 265 (933)
T KOG1274|consen 248 AASTLDGQILVWNVDTHE 265 (933)
T ss_pred eeeccCCcEEEEecccch
Confidence 999999999999999633
No 131
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.85 E-value=2.3e-18 Score=185.99 Aligned_cols=285 Identities=20% Similarity=0.354 Sum_probs=225.9
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEE---ecCC-CCCeEEEEEcCCCCEEEEEECCCe
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILS---LSGH-TSGIDSVSFDSSEVLVAAGAASGT 82 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~---l~~h-~~~V~~l~fspdg~~Lasgs~DG~ 82 (819)
.++.+.+.-+..|..+.|+|.+.+++++++. |.+.+|+...+..... +..+ ...|.|++|.++|.. ++|..+|.
T Consensus 191 ~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdv-iTgDS~G~ 268 (626)
T KOG2106|consen 191 AKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDV-ITGDSGGN 268 (626)
T ss_pred hccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCE-EeecCCce
Confidence 3444555566788999999988888888875 7899999987766543 3333 357999999999975 49999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-----------eEE---------------
Q 003445 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-----------GCI--------------- 136 (819)
Q Consensus 83 I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~-----------~~i--------------- 136 (819)
|.||+..+.+..+....|.+.|.+++.-.+|.+|- |+.|..|..||-.-. ..+
T Consensus 269 i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTt 347 (626)
T KOG2106|consen 269 ILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTT 347 (626)
T ss_pred EEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeec
Confidence 99999998888888779999999999999887655 999999999983210 001
Q ss_pred --------------EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEE
Q 003445 137 --------------HTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLAT 202 (819)
Q Consensus 137 --------------~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Las 202 (819)
....+|....+.++.+|+.+.+++++.|+.+++|+ ..+++.+.. ...++.|+.|+|.| .+|.
T Consensus 348 rN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~ 423 (626)
T KOG2106|consen 348 RNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAV 423 (626)
T ss_pred cceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEE
Confidence 11235778889999999999999999999999999 555555544 46788999999999 9999
Q ss_pred EECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCce-eeee-eccccceeEeEe-cC
Q 003445 203 GSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRC-HDAV-DVGWSRLSDLNV-HE 278 (819)
Q Consensus 203 gs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~-~~~~-~~~~s~i~~l~~-~d 278 (819)
|+..|...+.|.++...+.. .....++.++.|+|+|.+||+|+.| .|.||-.+.... ...+ ....+++..+.+ .|
T Consensus 424 Gt~~G~w~V~d~e~~~lv~~-~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~D 502 (626)
T KOG2106|consen 424 GTATGRWFVLDTETQDLVTI-HTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSD 502 (626)
T ss_pred eeccceEEEEecccceeEEE-EecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCC
Confidence 99999999999999655544 4448899999999999999999988 589998876432 2211 222377777777 78
Q ss_pred CCEEEEEEcCCeEEEEEecCC
Q 003445 279 GKLLGCSYNQSCVGVWVVDIS 299 (819)
Q Consensus 279 g~lLa~~~~Dg~V~IW~ld~~ 299 (819)
++++.+-+.|-.|..|.....
T Consensus 503 s~~~~~~S~d~eiLyW~~~~~ 523 (626)
T KOG2106|consen 503 SQFLVSNSGDYEILYWKPSEC 523 (626)
T ss_pred CceEEeccCceEEEEEccccC
Confidence 999999999999999954443
No 132
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.84 E-value=2.7e-18 Score=194.92 Aligned_cols=284 Identities=18% Similarity=0.302 Sum_probs=225.9
Q ss_pred EEEEEEeeC-CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003445 19 VNCLKIGRK-SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL 97 (819)
Q Consensus 19 V~~lafsp~-~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l 97 (819)
|+++. +|. -=+-++.|+.+|.+.||++.+++.++++.++...|+++.=+|-=..++.|..+|+|.+++++.++.+.++
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF 240 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE
Confidence 66654 441 1234888999999999999999999999999999999999998899999999999999999999999999
Q ss_pred cCCCCCeEEEEEecCCCE-EEEEECCCcEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 003445 98 TGHRSNCISVDFHPFGEF-FASGSLDTNLKIWDIRKKGCIHTYK-GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG 175 (819)
Q Consensus 98 ~~h~~~I~sl~fsp~g~~-Lasgs~Dg~I~IwDi~t~~~i~~~~-~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~ 175 (819)
+...+.|+++.|.-||+. +++|+..|.+.+||++..+.+.... .|.+.|....|.|....+++++.|+.+++|-..++
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 955699999999999985 6777778999999999887766554 67677777777777777777777766665522210
Q ss_pred ------------------------------------------------------e-------------------------
Q 003445 176 ------------------------------------------------------K------------------------- 176 (819)
Q Consensus 176 ------------------------------------------------------~------------------------- 176 (819)
.
T Consensus 321 dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~ 400 (910)
T KOG1539|consen 321 DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE 400 (910)
T ss_pred CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence 0
Q ss_pred ----------------------EEEE------------Ee-----cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 003445 177 ----------------------LLHD------------FK-----CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF 217 (819)
Q Consensus 177 ----------------------~i~~------------~~-----~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~ 217 (819)
...+ +. .....+++++.++.|++.+.|+..|.|.+|++++|
T Consensus 401 fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG 480 (910)
T KOG1539|consen 401 FAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG 480 (910)
T ss_pred eecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC
Confidence 0000 00 01135788899999999999999999999999999
Q ss_pred eEEEEe---CCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceee-------------------------------
Q 003445 218 ELIGSA---GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHD------------------------------- 262 (819)
Q Consensus 218 ~~l~~~---~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~------------------------------- 262 (819)
-....+ ..|..+|++++...-++.+++++.+ -+++|+++......
T Consensus 481 i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~v 560 (910)
T KOG1539|consen 481 IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRV 560 (910)
T ss_pred eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEE
Confidence 888888 5889999999999888888877655 48999987654211
Q ss_pred ----------eeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCCceee
Q 003445 263 ----------AVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 263 ----------~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~~~p 303 (819)
.+..+...+.++.+ +||++|++++.|++|++||+.++.+-.
T Consensus 561 vD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 561 VDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLID 612 (910)
T ss_pred EEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceee
Confidence 01345567888776 899999999999999999999988764
No 133
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.84 E-value=5.6e-20 Score=204.35 Aligned_cols=243 Identities=21% Similarity=0.331 Sum_probs=211.0
Q ss_pred ccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCC
Q 003445 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDS---SEVLVAAGAASGTIKLWDLEE 90 (819)
Q Consensus 14 ~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fsp---dg~~Lasgs~DG~I~IWDl~s 90 (819)
.-...|.|++.+| ++++||+|..-|+++||++.+-+....+..|...|.|+.|+. ..++|++++.|.-|++||+..
T Consensus 457 d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 457 DSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred CcccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 3456799999999 778999999999999999999999999999999999999975 357999999999999999964
Q ss_pred -CeEEEEEcCCCCCeEEEEEecCC--CEEEEEECCCcEEEEECCCCeEEEEEecC-----CCCeEEEEEcCCCCEEEEEE
Q 003445 91 -AKIVRTLTGHRSNCISVDFHPFG--EFFASGSLDTNLKIWDIRKKGCIHTYKGH-----TRGVNAIRFTPDGRWVVSGG 162 (819)
Q Consensus 91 -~~~i~~l~~h~~~I~sl~fsp~g--~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h-----~~~I~sl~fspdg~~L~sgs 162 (819)
..+++++.+|...|+++.|-..| ..+++++.|..|.+--.+.......+..| ...++.++..|..+++++++
T Consensus 536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c 615 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC 615 (1080)
T ss_pred ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence 45778999999999999998877 57899999998876544432222222222 34688999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEEec---CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCC
Q 003445 163 EDNTVKLWDLTAGKLLHDFKC---HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG 239 (819)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~~---h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg 239 (819)
.|..|+|||+.+|+..+.|++ |.+....+...|.|.|||+.+.|+++.|||+-+++++..+.+|...|+.+.|.+|.
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC 695 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC 695 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccc
Confidence 999999999999999999985 66778899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEECCC-EEEEEecC
Q 003445 240 RTLLCGLHES-LKVFSWEP 257 (819)
Q Consensus 240 ~~Lasgs~d~-I~Vwd~~~ 257 (819)
+.|++.+.|+ |.||.+..
T Consensus 696 kHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 696 KHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhheeecCCceEEEEECch
Confidence 9999876665 88888754
No 134
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=3.5e-20 Score=193.36 Aligned_cols=245 Identities=19% Similarity=0.338 Sum_probs=204.3
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
.+..|++|.+.|+.|++.. ..++++++|.+|+.|.++- ..++++.+ ...+..+.-+..+..++++|. .|.|||
T Consensus 101 ~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD 173 (433)
T KOG0268|consen 101 CIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWD 173 (433)
T ss_pred hhheeecccCceeeEEecc---cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecc
Confidence 3568999999999999975 4588999999999999864 46666664 456777877777788888864 599999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003445 88 LEEAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (819)
Q Consensus 88 l~s~~~i~~l~~h~~~I~sl~fsp~g~-~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~ 166 (819)
.+...+++.+.-..+.|.++.|+|... .|++++.|+.|.+||+++..+++...- .-.-+.|+|+|.+-.+++|++|..
T Consensus 174 ~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~n 252 (433)
T KOG0268|consen 174 EQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHN 252 (433)
T ss_pred cccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecccccc
Confidence 999999999998889999999999765 577777999999999999988876652 334578999998888999999999
Q ss_pred EEEEECCCC-eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC-CCCCeeEEEEeCCCCEEEE
Q 003445 167 VKLWDLTAG-KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP-ETSGVRCLTFNPDGRTLLC 244 (819)
Q Consensus 167 I~IwDl~t~-~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~-~~~~I~sl~fspdg~~Las 244 (819)
++.||++.- ..+..+.+|.++|..++|+|.|.-+++|+.|.+|+||.+..+..-..+.. ....|.|+.|+.|.+|+++
T Consensus 253 lY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~S 332 (433)
T KOG0268|consen 253 LYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIIS 332 (433)
T ss_pred ceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEe
Confidence 999999864 56777889999999999999999999999999999999987764433321 2356899999999999999
Q ss_pred EECC-CEEEEEecCCce
Q 003445 245 GLHE-SLKVFSWEPIRC 260 (819)
Q Consensus 245 gs~d-~I~Vwd~~~~~~ 260 (819)
|+++ .+++|.-...+.
T Consensus 333 GSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 333 GSDDGNVRLWKAKASEK 349 (433)
T ss_pred cCCCcceeeeecchhhh
Confidence 9998 599998765443
No 135
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.83 E-value=5.5e-19 Score=197.13 Aligned_cols=296 Identities=18% Similarity=0.309 Sum_probs=229.6
Q ss_pred ccceEEEEeccCCCEEEEEEeeCCC--cEEEEEeCCCeEEEEECCCCc---------------------eEE--------
Q 003445 5 RAYKLQEFVAHSSTVNCLKIGRKSS--RVLVTGGEDHKVNLWAIGKPN---------------------AIL-------- 53 (819)
Q Consensus 5 r~~kl~~~~~H~~~V~~lafsp~~~--~~Latgs~Dg~V~IWdl~~~~---------------------~i~-------- 53 (819)
+..++.++.||.+.|.+++|...++ .+|++++.|..|+||.+.-.. ...
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 4466789999999999999987554 588999999999999872111 111
Q ss_pred --EecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--eEEE-----EEcCCCCCeEEEEEecCCCEEEEEECCCc
Q 003445 54 --SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA--KIVR-----TLTGHRSNCISVDFHPFGEFFASGSLDTN 124 (819)
Q Consensus 54 --~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~--~~i~-----~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~ 124 (819)
.+.||.+.|+++.|+|.+..|++++.|.++.+|...+. --+. .+.+.....+...|+|+++.+++-+..|.
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 12389999999999999999999999999999987654 2222 22334456889999999999999999999
Q ss_pred EEEEECCC---CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-------------------------C--
Q 003445 125 LKIWDIRK---KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT-------------------------A-- 174 (819)
Q Consensus 125 I~IwDi~t---~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~-------------------------t-- 174 (819)
.++|-... ......+.+|...|..++|+|.|.+|++.+.|.+-++|-.- +
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~ 419 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED 419 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCC
Confidence 99998322 12334467899999999999999999999998777665321 0
Q ss_pred --------------------------------------------------------------Ce----------------
Q 003445 175 --------------------------------------------------------------GK---------------- 176 (819)
Q Consensus 175 --------------------------------------------------------------~~---------------- 176 (819)
|.
T Consensus 420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~ 499 (764)
T KOG1063|consen 420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE 499 (764)
T ss_pred ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence 00
Q ss_pred -----------------EEEEEecCCCCeEEEEEeCCCCEEEEEECC-----CeEEEEECCCCeEEEEeCCCCCCeeEEE
Q 003445 177 -----------------LLHDFKCHEGQIQCIDFHPHEFLLATGSAD-----RTVKFWDLETFELIGSAGPETSGVRCLT 234 (819)
Q Consensus 177 -----------------~i~~~~~h~~~I~sl~fspdg~~Lasgs~D-----g~I~iwDl~~~~~l~~~~~~~~~I~sl~ 234 (819)
.++.+.+|...|++++.+|+++++|+++.. ..|++|+..++..+..+..|.-.|+.++
T Consensus 500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~ 579 (764)
T KOG1063|consen 500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLA 579 (764)
T ss_pred ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEE
Confidence 011223577789999999999999999754 3699999999999999999999999999
Q ss_pred EeCCCCEEEEEECC-CEEEEEecCCc----eeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCCc
Q 003445 235 FNPDGRTLLCGLHE-SLKVFSWEPIR----CHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISR 300 (819)
Q Consensus 235 fspdg~~Lasgs~d-~I~Vwd~~~~~----~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~ 300 (819)
|+|||++|++.+.| ...+|...... .......+...|.+..+ +++.++++++-|.+|.||...-.+
T Consensus 580 FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 580 FSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLR 651 (764)
T ss_pred ECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCch
Confidence 99999999988777 58888764321 12234555555666655 788899999999999999887764
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.83 E-value=2.9e-19 Score=197.79 Aligned_cols=286 Identities=17% Similarity=0.284 Sum_probs=204.2
Q ss_pred EEEee--CCCcEEEEEeCCCeEEEEECCCCce------EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003445 22 LKIGR--KSSRVLVTGGEDHKVNLWAIGKPNA------ILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI 93 (819)
Q Consensus 22 lafsp--~~~~~Latgs~Dg~V~IWdl~~~~~------i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~ 93 (819)
..|++ ....+|+.+.+||.|.++|...... +.....|...|..+.|.|....|++++.|.++++||+.+.++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 55654 3467899999999999999854332 345567999999999999778999999999999999999998
Q ss_pred EEE--EcCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCe---------------------------EEEEEecCC
Q 003445 94 VRT--LTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKG---------------------------CIHTYKGHT 143 (819)
Q Consensus 94 i~~--l~~h~~~I~sl~fsp~g~-~Lasgs~Dg~I~IwDi~t~~---------------------------~i~~~~~h~ 143 (819)
+.. +.+|...+.+++|+|.+. .|++|+.||.|.|||++-.. .+...+.+.
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s 214 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS 214 (720)
T ss_pred ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence 877 899999999999999765 69999999999999997432 011122344
Q ss_pred CCeEE---EEEcCCCCEEEEEEC-CCeEEEEECCCCeEEEEE--------ecC---CCCeEEEEEeCCCCEEEEEECCCe
Q 003445 144 RGVNA---IRFTPDGRWVVSGGE-DNTVKLWDLTAGKLLHDF--------KCH---EGQIQCIDFHPHEFLLATGSADRT 208 (819)
Q Consensus 144 ~~I~s---l~fspdg~~L~sgs~-Dg~I~IwDl~t~~~i~~~--------~~h---~~~I~sl~fspdg~~Lasgs~Dg~ 208 (819)
..|.+ +.+..|...|++++. |+.|+|||++........ ..| .-.+.++.....|.+|.+.+.|+.
T Consensus 215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s 294 (720)
T KOG0321|consen 215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS 294 (720)
T ss_pred CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence 44554 555568889999887 999999999976543322 223 234778888888899999889999
Q ss_pred EEEEECCCCe--EEEEeCCCCC--CeeEEEEeCCCCEEEEEECC-CEEEEEecCCce-eeeeeccccceeEeEe---cCC
Q 003445 209 VKFWDLETFE--LIGSAGPETS--GVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRC-HDAVDVGWSRLSDLNV---HEG 279 (819)
Q Consensus 209 I~iwDl~~~~--~l~~~~~~~~--~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~-~~~~~~~~s~i~~l~~---~dg 279 (819)
|++||+.... ++..+.++.. .-..-..+||+.+|++|+.+ ...+|.++.-+. ...+..+.-.+..+.+ +..
T Consensus 295 Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t 374 (720)
T KOG0321|consen 295 IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATT 374 (720)
T ss_pred EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCC
Confidence 9999998643 2333333211 11223458999999999877 467777665332 1222333333444444 455
Q ss_pred CEEEEEEcCCeEEEEEecCCceeeeeecc
Q 003445 280 KLLGCSYNQSCVGVWVVDISRIEPYTIGS 308 (819)
Q Consensus 280 ~lLa~~~~Dg~V~IW~ld~~~~~p~~~~~ 308 (819)
.++.| ++|..+.||++..+-...+....
T Consensus 375 ~v~Tc-SdD~~~kiW~l~~~l~e~~~adk 402 (720)
T KOG0321|consen 375 PVATC-SDDFRVKIWRLSNGLEEIYAADK 402 (720)
T ss_pred Cceee-ccCcceEEEeccCchhhcccccc
Confidence 66666 99999999999555444443333
No 137
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=3.3e-17 Score=179.34 Aligned_cols=288 Identities=30% Similarity=0.612 Sum_probs=234.0
Q ss_pred EEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc-eEEEecCCCC-CeEEEEE-cCCCC-EEEEEEC-CCeEEE
Q 003445 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-AILSLSGHTS-GIDSVSF-DSSEV-LVAAGAA-SGTIKL 85 (819)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~-~i~~l~~h~~-~V~~l~f-spdg~-~Lasgs~-DG~I~I 85 (819)
.+..|...|.++.|.+ .+..++.++.|+.+.+|+...+. .+..+.++.. .+..+.+ .+++. +++..+. |+.+.+
T Consensus 60 ~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 60 LLRGHEDSITSIAFSP-DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eeeeccceEEEEEECC-CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 4678999999999998 66778888899999999998876 6777776443 7788877 78777 5555444 999999
Q ss_pred EECCC-CeEEEEEcCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEE
Q 003445 86 WDLEE-AKIVRTLTGHRSNCISVDFHPFGEFFASGSL-DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR-WVVSGG 162 (819)
Q Consensus 86 WDl~s-~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~-Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~-~L~sgs 162 (819)
||+.. ......+..|...|..++|+|++.++++++. |+.+++|++..+..+..+.+|...+.+++|+|++. .+++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 99998 8888889999999999999999998888885 99999999999889999999999999999999998 555558
Q ss_pred CCCeEEEEECCCCeEEE-EEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeE-EEEeCCCCCCeeEEEEeCCCC
Q 003445 163 EDNTVKLWDLTAGKLLH-DFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL-IGSAGPETSGVRCLTFNPDGR 240 (819)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~-~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~-l~~~~~~~~~I~sl~fspdg~ 240 (819)
.|+.|++||...+..+. .+.+|.... ...|+|++.++++++.|+.+++||+..... +..+..|...+.++.|+|++.
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 297 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK 297 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCC
Confidence 99999999999888887 677787775 448999998999999999999999987664 444466788999999999888
Q ss_pred EEEEEECC-CEEEEEecCCceeeeee--ccccceeEeEec-CCCEEEEE-EcCCeEEEEEecCCc
Q 003445 241 TLLCGLHE-SLKVFSWEPIRCHDAVD--VGWSRLSDLNVH-EGKLLGCS-YNQSCVGVWVVDISR 300 (819)
Q Consensus 241 ~Lasgs~d-~I~Vwd~~~~~~~~~~~--~~~s~i~~l~~~-dg~lLa~~-~~Dg~V~IW~ld~~~ 300 (819)
.+++++.+ .+.+|+........... .+...+..+.+. ++..+..+ ..|+.+.+|++....
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 88876555 48999887766555544 344445555552 22455555 678899999999887
No 138
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=9.5e-19 Score=179.27 Aligned_cols=239 Identities=19% Similarity=0.347 Sum_probs=186.0
Q ss_pred CCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC-CeEE-EEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 003445 57 GHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEE-AKIV-RTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK 133 (819)
Q Consensus 57 ~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~s-~~~i-~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~ 133 (819)
...+.|.+|+|+| ...++++|+.||+|++|+++. |..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3567899999999 556777999999999999986 3433 345568999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCeEEEEEcCCCC--EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEE
Q 003445 134 GCIHTYKGHTRGVNAIRFTPDGR--WVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKF 211 (819)
Q Consensus 134 ~~i~~~~~h~~~I~sl~fspdg~--~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~i 211 (819)
+ +..+..|..+|.++.|-+... .|++|+.|.+|+.||.+..+++.++.. ...++++..- ..+++++..++.|.+
T Consensus 105 Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~--~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 Q-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVL--YPMAVVATAERHIAV 180 (347)
T ss_pred C-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhcc--CceeEEEecCCcEEE
Confidence 5 556677999999999988655 899999999999999999999988873 5667777653 447888888999999
Q ss_pred EECCCCeEEEE--eCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCC--------ceeeeeeccc---cceeEeEe-
Q 003445 212 WDLETFELIGS--AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPI--------RCHDAVDVGW---SRLSDLNV- 276 (819)
Q Consensus 212 wDl~~~~~l~~--~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~--------~~~~~~~~~~---s~i~~l~~- 276 (819)
|+++++..... ..+....++|++...|....+.|+-+ .+-|..++.. +|+....... ..+..+.+
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh 260 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH 260 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee
Confidence 99987654322 12335568999998887777777654 5777777653 4554322111 12334455
Q ss_pred cCCCEEEEEEcCCeEEEEEecCC
Q 003445 277 HEGKLLGCSYNQSCVGVWVVDIS 299 (819)
Q Consensus 277 ~dg~lLa~~~~Dg~V~IW~ld~~ 299 (819)
+....|++.+.||...+||-+..
T Consensus 261 P~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 261 PVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred cccceEEEecCCceEEEecchhh
Confidence 45689999999999999997754
No 139
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.5e-18 Score=178.16 Aligned_cols=241 Identities=20% Similarity=0.322 Sum_probs=190.7
Q ss_pred eccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC----ceEEEecCCCCCeEEEEEcC--CCCEEEEEECCCeEEEE
Q 003445 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----NAILSLSGHTSGIDSVSFDS--SEVLVAAGAASGTIKLW 86 (819)
Q Consensus 13 ~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~----~~i~~l~~h~~~V~~l~fsp--dg~~Lasgs~DG~I~IW 86 (819)
.+|.+-|.|+.|.+ .|+.+|+|+.|++|+|||..+. .+....+.|.+.|..+.|.+ -|+.+++++.|+++.||
T Consensus 10 s~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 36899999999998 7788999999999999997433 34556678999999999954 58999999999999999
Q ss_pred ECC---------CCeEEEEEcCCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCC------eEEEEEe-------cC
Q 003445 87 DLE---------EAKIVRTLTGHRSNCISVDFHPF--GEFFASGSLDTNLKIWDIRKK------GCIHTYK-------GH 142 (819)
Q Consensus 87 Dl~---------s~~~i~~l~~h~~~I~sl~fsp~--g~~Lasgs~Dg~I~IwDi~t~------~~i~~~~-------~h 142 (819)
.-. ......++......|+.+.|.|. |-.+|+++.||.|+||+.-.. ...+.++ .+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 752 11244567778889999999985 568999999999999986543 2222332 35
Q ss_pred CCCeEEEEEcC---CCCEEEEEECC-----CeEEEEECCCC----eEEEEEecCCCCeEEEEEeCC----CCEEEEEECC
Q 003445 143 TRGVNAIRFTP---DGRWVVSGGED-----NTVKLWDLTAG----KLLHDFKCHEGQIQCIDFHPH----EFLLATGSAD 206 (819)
Q Consensus 143 ~~~I~sl~fsp---dg~~L~sgs~D-----g~I~IwDl~t~----~~i~~~~~h~~~I~sl~fspd----g~~Lasgs~D 206 (819)
..+..|+.|+| ...+|+.|+.+ +.++||....+ ..+.++.+|..+|+.++|.|+ -.+||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 66788999997 34578888765 47888876543 245566789999999999997 3589999999
Q ss_pred CeEEEEECCC--------------------CeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCC-EEEEEe
Q 003445 207 RTVKFWDLET--------------------FELIGSAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFSW 255 (819)
Q Consensus 207 g~I~iwDl~~--------------------~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~-I~Vwd~ 255 (819)
| |+||.+.. -+.+..+..|.+.|..+.|+-.|..|++.++|+ +++|.-
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 9 99999873 134556788999999999999999999777665 888864
No 140
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=6.3e-19 Score=193.60 Aligned_cols=281 Identities=17% Similarity=0.259 Sum_probs=218.5
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCC--EEEEEECCCeEEEEE
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV--LVAAGAASGTIKLWD 87 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~--~Lasgs~DG~I~IWD 87 (819)
..|.+|++.|.|+...| .+.+|++|+.||+|+||.+.++.++..+. ..+.|.||+|+|.+. .|+++ ..+.+.|.+
T Consensus 394 lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA-~~~~~~ivn 470 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA-VGECVLIVN 470 (733)
T ss_pred eeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEE-ecCceEEeC
Confidence 46889999999999999 88899999999999999999999999887 466899999999765 34433 233344443
Q ss_pred CCCC-------------------------------------eEEEEEcCCCCCeEEEEEecCCCEEEEEECC---CcEEE
Q 003445 88 LEEA-------------------------------------KIVRTLTGHRSNCISVDFHPFGEFFASGSLD---TNLKI 127 (819)
Q Consensus 88 l~s~-------------------------------------~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~D---g~I~I 127 (819)
..-| .-++..-.|...|..+.||..|.||++...+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 2111 0122333478889999999999999998654 46889
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC
Q 003445 128 WDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR 207 (819)
Q Consensus 128 wDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg 207 (819)
+++.......-|....+.|.++.|+|...+|++++ ...|+|||+..+..++.+......|..++.||.|.-|+.|+.|+
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 99987766666655677899999999988888886 56899999998887777776677899999999999999999999
Q ss_pred eEEEEECCCC-eEEEEeCCCCCCeeEEEEeCCCCEEEEEECCC-EEEEEecCC---------ceeeeeeccccc----ee
Q 003445 208 TVKFWDLETF-ELIGSAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFSWEPI---------RCHDAVDVGWSR----LS 272 (819)
Q Consensus 208 ~I~iwDl~~~-~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~~~---------~~~~~~~~~~s~----i~ 272 (819)
.+..||+.-. ++...+..|...+++++|++.-.++++|++|+ +.||.-.-. -.+..+..+... +-
T Consensus 630 k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVL 709 (733)
T KOG0650|consen 630 KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVL 709 (733)
T ss_pred eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceE
Confidence 9999999754 56777889999999999999999999999874 666642211 112223333222 33
Q ss_pred EeEe-cCCCEEEEEEcCCeEEEE
Q 003445 273 DLNV-HEGKLLGCSYNQSCVGVW 294 (819)
Q Consensus 273 ~l~~-~dg~lLa~~~~Dg~V~IW 294 (819)
+..+ +...+|.+++.||.|++|
T Consensus 710 d~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 710 DTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecccCCCceEEecCCCceEEee
Confidence 3444 456899999999999999
No 141
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=3.2e-19 Score=190.77 Aligned_cols=240 Identities=22% Similarity=0.404 Sum_probs=187.1
Q ss_pred EEEEEee------CCCcEEEEEeCCCeEEEEECCCC---ceEEE------------------ecCCCCCeEEEEEcCC-C
Q 003445 20 NCLKIGR------KSSRVLVTGGEDHKVNLWAIGKP---NAILS------------------LSGHTSGIDSVSFDSS-E 71 (819)
Q Consensus 20 ~~lafsp------~~~~~Latgs~Dg~V~IWdl~~~---~~i~~------------------l~~h~~~V~~l~fspd-g 71 (819)
.|++|.- ..++|+|.|..|..|.|||+.-. .+... -.+|+..|..+.|+.. .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5666643 23679999999999999998321 11111 2369999999999875 4
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEE
Q 003445 72 VLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIR 150 (819)
Q Consensus 72 ~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~ 150 (819)
..|++|+.|.+|++||+.++++..++..|...|.++.|+|.. .+|++|+.|++|.+.|.|........-...+.|..++
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA 336 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence 589999999999999999999999999999999999999965 5799999999999999995443333333567899999
Q ss_pred EcCC-CCEEEEEECCCeEEEEECCCC-eEEEEEecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCCeE--EEEeCC
Q 003445 151 FTPD-GRWVVSGGEDNTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFEL--IGSAGP 225 (819)
Q Consensus 151 fspd-g~~L~sgs~Dg~I~IwDl~t~-~~i~~~~~h~~~I~sl~fspd-g~~Lasgs~Dg~I~iwDl~~~~~--l~~~~~ 225 (819)
|.|. ...++++..||+|+-+|+|.. +++.+++.|.+.|.++++++. ..+|++++.|+.|++|++..-.. +..-..
T Consensus 337 w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~ 416 (463)
T KOG0270|consen 337 WDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF 416 (463)
T ss_pred ecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccc
Confidence 9984 457788889999999999975 899999999999999999986 56899999999999999875332 222111
Q ss_pred CCCCeeEEEEeCCCCE-EEEEECC-CEEEEEecCCc
Q 003445 226 ETSGVRCLTFNPDGRT-LLCGLHE-SLKVFSWEPIR 259 (819)
Q Consensus 226 ~~~~I~sl~fspdg~~-Lasgs~d-~I~Vwd~~~~~ 259 (819)
.-+...|+++.|+-.+ |+.|+.. .++|||+.+..
T Consensus 417 ~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 417 KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred cccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 2233677888887544 4455544 49999987644
No 142
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=2e-18 Score=183.00 Aligned_cols=287 Identities=19% Similarity=0.369 Sum_probs=221.6
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC---------ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP---------NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~---------~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
..+|..+.|.+.+...|+||+.|..|+||-+..+ +.+..+..|...|+++.|+|+|.+|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 3589999999966669999999999999987432 2234567899999999999999999999999999999
Q ss_pred ECC--------C--------CeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEE
Q 003445 87 DLE--------E--------AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIR 150 (819)
Q Consensus 87 Dl~--------s--------~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~ 150 (819)
-.. + ......+.+|...|..++|+|++.++++++.|..+++||+..|.....+..|...+..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 765 2 234566788999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEe----------c---------CCC----CeEEEEEeCCCCEEEEEEC--
Q 003445 151 FTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK----------C---------HEG----QIQCIDFHPHEFLLATGSA-- 205 (819)
Q Consensus 151 fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~----------~---------h~~----~I~sl~fspdg~~Lasgs~-- 205 (819)
|.|-++++++-+.|...+.+.+...+.++... . |+. -...++|+|+|.+|++...
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~ 252 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF 252 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence 99999999998888877776665433222111 0 111 1345789999999988642
Q ss_pred --C-----CeEEEEECCCC-eEEEEeCCCCCCeeEEEEeC------------------CCCEEEEEECCCEEEEEecCCc
Q 003445 206 --D-----RTVKFWDLETF-ELIGSAGPETSGVRCLTFNP------------------DGRTLLCGLHESLKVFSWEPIR 259 (819)
Q Consensus 206 --D-----g~I~iwDl~~~-~~l~~~~~~~~~I~sl~fsp------------------dg~~Lasgs~d~I~Vwd~~~~~ 259 (819)
+ ++.++|+-... ++...+.....+...+.|+| -+-.+++++.+.+.|||-++..
T Consensus 253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~ 332 (434)
T KOG1009|consen 253 KVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLE 332 (434)
T ss_pred eeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecccccc
Confidence 2 23455554322 23333444444444444443 3456678889999999998877
Q ss_pred eeeee-eccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCCcee
Q 003445 260 CHDAV-DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIE 302 (819)
Q Consensus 260 ~~~~~-~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~~~ 302 (819)
.+.++ ..+++.++++.+ .+|.+|+.++.||...+-.++..++.
T Consensus 333 P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 333 PLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 76654 788999999988 67899999999999998888776654
No 143
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2.5e-19 Score=178.71 Aligned_cols=244 Identities=19% Similarity=0.316 Sum_probs=193.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---eEEEEEcCCCCCeEEEEEec--CCCEEEEEECCCcEEEEEC
Q 003445 56 SGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA---KIVRTLTGHRSNCISVDFHP--FGEFFASGSLDTNLKIWDI 130 (819)
Q Consensus 56 ~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~---~~i~~l~~h~~~I~sl~fsp--~g~~Lasgs~Dg~I~IwDi 130 (819)
..|.+-|..+...--|+.|++++.|++|+|+.++.. +.+.++.+|.++|+.++|-. .|.+||+++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 468888888888888999999999999999999754 57889999999999999965 8999999999999999998
Q ss_pred CCCeE--EEEEecCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCC---eEEEEEecCCCCeEEEEEeCC---C---
Q 003445 131 RKKGC--IHTYKGHTRGVNAIRFTP--DGRWVVSGGEDNTVKLWDLTAG---KLLHDFKCHEGQIQCIDFHPH---E--- 197 (819)
Q Consensus 131 ~t~~~--i~~~~~h~~~I~sl~fsp--dg~~L~sgs~Dg~I~IwDl~t~---~~i~~~~~h~~~I~sl~fspd---g--- 197 (819)
.+++. ...+..|...|++++|.| .|-.|++++.||.|.|.+++.. .......+|.-.|++++|.|- |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 87743 345567999999999998 5678999999999999998754 223345679999999999995 4
Q ss_pred --------CEEEEEECCCeEEEEECCCCe--EEEEeCCCCCCeeEEEEeCCC----CEEEEEECC-CEEEEEecCC-cee
Q 003445 198 --------FLLATGSADRTVKFWDLETFE--LIGSAGPETSGVRCLTFNPDG----RTLLCGLHE-SLKVFSWEPI-RCH 261 (819)
Q Consensus 198 --------~~Lasgs~Dg~I~iwDl~~~~--~l~~~~~~~~~I~sl~fspdg----~~Lasgs~d-~I~Vwd~~~~-~~~ 261 (819)
+.|++|+.|..|+||+..+++ .-..+..|...|+.++|.|.- .+|++++.| .+.||--+.. +..
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 579999999999999998753 334588999999999999963 578888777 4788866522 111
Q ss_pred e--eeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCC
Q 003445 262 D--AVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDIS 299 (819)
Q Consensus 262 ~--~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~ 299 (819)
. .+..--..+..+.+ ..|.+|++++.|+.|.+|.-+..
T Consensus 248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 0 11111112223333 67999999999999999976543
No 144
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3e-18 Score=175.96 Aligned_cols=248 Identities=21% Similarity=0.382 Sum_probs=192.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC----CeEEEEEcCCCCCeEEEEEec--CCCEEEEEECCCcEEEEE
Q 003445 56 SGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE----AKIVRTLTGHRSNCISVDFHP--FGEFFASGSLDTNLKIWD 129 (819)
Q Consensus 56 ~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s----~~~i~~l~~h~~~I~sl~fsp--~g~~Lasgs~Dg~I~IwD 129 (819)
.+|.+-|.|+.|.+.|+.+++|+.|++|+|||... ..+....+.|.+.|..+.|-+ .|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 46888999999999999999999999999999753 346677889999999999955 688999999999999997
Q ss_pred CC---------CCeEEEEEecCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCC------eEEEEEe-------cCC
Q 003445 130 IR---------KKGCIHTYKGHTRGVNAIRFTP--DGRWVVSGGEDNTVKLWDLTAG------KLLHDFK-------CHE 185 (819)
Q Consensus 130 i~---------t~~~i~~~~~h~~~I~sl~fsp--dg~~L~sgs~Dg~I~IwDl~t~------~~i~~~~-------~h~ 185 (819)
-. ......++......|+.++|.| -|-.|++++.||.|+||+.-.. .+.+++. .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 52 1223445666778899999999 5778999999999999987543 3333333 245
Q ss_pred CCeEEEEEeCC---CCEEEEEECC-----CeEEEEECCC----CeEEEEeCCCCCCeeEEEEeCC----CCEEEEEECCC
Q 003445 186 GQIQCIDFHPH---EFLLATGSAD-----RTVKFWDLET----FELIGSAGPETSGVRCLTFNPD----GRTLLCGLHES 249 (819)
Q Consensus 186 ~~I~sl~fspd---g~~Lasgs~D-----g~I~iwDl~~----~~~l~~~~~~~~~I~sl~fspd----g~~Lasgs~d~ 249 (819)
.+..|+.|+|. ..+||.|+.+ +.++||.... ...+..+..|..+|+.++|.|+ -..|++++.|+
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 66789999984 5689998866 4788887643 3355667889999999999996 35688999999
Q ss_pred EEEEEecCCc--------------------eeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCCceee
Q 003445 250 LKVFSWEPIR--------------------CHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 250 I~Vwd~~~~~--------------------~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~~~p 303 (819)
|+||.+...+ ....++.+...+..+.+ -.|.+|++++.||+|++|.....+.-.
T Consensus 250 v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~k 324 (361)
T KOG2445|consen 250 VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWK 324 (361)
T ss_pred EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhhe
Confidence 9999998532 11123444455555555 457889999999999999887766543
No 145
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.1e-18 Score=187.17 Aligned_cols=252 Identities=13% Similarity=0.297 Sum_probs=211.0
Q ss_pred cccceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEE--EecCCC-CCeEEEEEcCCCCEEEEEECC
Q 003445 4 KRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL--SLSGHT-SGIDSVSFDSSEVLVAAGAAS 80 (819)
Q Consensus 4 kr~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~--~l~~h~-~~V~~l~fspdg~~Lasgs~D 80 (819)
++..+++.+.--..+|.+++|.|++...+++++....++.||+.+.+... ...++. ..+.....++++++|+..|..
T Consensus 245 k~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~ 324 (514)
T KOG2055|consen 245 KVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN 324 (514)
T ss_pred ccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC
Confidence 45567788887889999999999777689999999999999998776543 344554 367788899999999999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCC-CeEEEEEcCCCCEEE
Q 003445 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTR-GVNAIRFTPDGRWVV 159 (819)
Q Consensus 81 G~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~-~I~sl~fspdg~~L~ 159 (819)
|.|.+....+++.+..++ ..+.|..++|+.+++.|++.+.+|.|++||+++..+++++....+ .-+++|.+++|.||+
T Consensus 325 G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA 403 (514)
T KOG2055|consen 325 GHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLA 403 (514)
T ss_pred ceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEE
Confidence 999999999999998888 567899999999999999999999999999999999999874322 235677789999999
Q ss_pred EEECCCeEEEEECCC------CeEEEEEecCCCCeEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeEEEEeCCC---CC
Q 003445 160 SGGEDNTVKLWDLTA------GKLLHDFKCHEGQIQCIDFHPHEFLLATGSA--DRTVKFWDLETFELIGSAGPE---TS 228 (819)
Q Consensus 160 sgs~Dg~I~IwDl~t------~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~--Dg~I~iwDl~~~~~l~~~~~~---~~ 228 (819)
+|+..|.|.|||..+ .+++..+..-...|+++.|++++.+||.+|. +..+++-.+.+......+... -+
T Consensus 404 ~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg 483 (514)
T KOG2055|consen 404 TGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVG 483 (514)
T ss_pred eccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCccc
Confidence 999999999999653 4566666666788999999999999999885 567999988887766666543 35
Q ss_pred CeeEEEEeCCCCEEEEEECC-CEEEEEec
Q 003445 229 GVRCLTFNPDGRTLLCGLHE-SLKVFSWE 256 (819)
Q Consensus 229 ~I~sl~fspdg~~Lasgs~d-~I~Vwd~~ 256 (819)
.++|++|+|.|-+|++|..+ .+.+|.+.
T Consensus 484 ~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 484 HVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ceEEEEecCCCceEEeecCCCceeeEeec
Confidence 68999999999999999877 48888763
No 146
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.81 E-value=1.9e-16 Score=173.35 Aligned_cols=288 Identities=31% Similarity=0.607 Sum_probs=230.0
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeC-CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGE-DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIK 84 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~-Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~ 84 (819)
.....+..|...|.+++|+| ++.+++.++. |+.+++|++..+..+..+.+|...|.+++|+|++. ++++++.|+.|.
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred eEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 45567889999999999999 5557777775 99999999998899999999999999999999998 555558999999
Q ss_pred EEECCCCeEEE-EEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeE-EEEEecCCCCeEEEEEcCCCCEEEEEE
Q 003445 85 LWDLEEAKIVR-TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC-IHTYKGHTRGVNAIRFTPDGRWVVSGG 162 (819)
Q Consensus 85 IWDl~s~~~i~-~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~-i~~~~~h~~~I~sl~fspdg~~L~sgs 162 (819)
+||...+..+. .+.+|.... ...|++++.++++++.|+.+++|+++.... +..+..|...+.++.|.|++..+++++
T Consensus 225 ~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 303 (466)
T COG2319 225 LWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303 (466)
T ss_pred EEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee
Confidence 99999888887 688888875 448999998999999999999999987664 555567889999999999888899899
Q ss_pred CCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEeCCCCEEEEE-ECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCC
Q 003445 163 EDNTVKLWDLTAGKLLHDFK--CHEGQIQCIDFHPHEFLLATG-SADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG 239 (819)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~--~h~~~I~sl~fspdg~~Lasg-s~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg 239 (819)
.|+.+.+||..+........ .|...+..+.|.+++..++.+ ..|+.+.+|++............. .+..+.+.+ .
T Consensus 304 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~ 381 (466)
T COG2319 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-D 381 (466)
T ss_pred CCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-C
Confidence 99899999999888777665 777789999994332455555 678999999998877333333222 288999988 5
Q ss_pred CEEEE-E-ECCCEEEEEecCCceeeeeecc-ccceeEeEecCCCEEEEEEcCCeEEEEEecC
Q 003445 240 RTLLC-G-LHESLKVFSWEPIRCHDAVDVG-WSRLSDLNVHEGKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 240 ~~Las-g-s~d~I~Vwd~~~~~~~~~~~~~-~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~ 298 (819)
..+.. + .++.+.+|+............. ..........++..++.+..++.+.+|++..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 33333 2 3446999999988777665554 3333344447788888899999999999988
No 147
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=2.7e-18 Score=180.18 Aligned_cols=202 Identities=23% Similarity=0.484 Sum_probs=165.1
Q ss_pred cCCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECC----------------CCeEEEEEcCCCCCeEEEEEecCCC-EE
Q 003445 56 SGHTSGIDSVSFDSS--EVLVAAGAASGTIKLWDLE----------------EAKIVRTLTGHRSNCISVDFHPFGE-FF 116 (819)
Q Consensus 56 ~~h~~~V~~l~fspd--g~~Lasgs~DG~I~IWDl~----------------s~~~i~~l~~h~~~I~sl~fsp~g~-~L 116 (819)
..|.+.++.+.-.+- ..+.++-+..|.|+|||+. ..+++.++.+|...-+.++|+|... .|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 357788888877664 4566677788999999984 2357888999999999999999433 48
Q ss_pred EEEECCCcEEEEECCCCeEE---EEEecCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCC---eEEEEEecCCCCeE
Q 003445 117 ASGSLDTNLKIWDIRKKGCI---HTYKGHTRGVNAIRFTPD-GRWVVSGGEDNTVKLWDLTAG---KLLHDFKCHEGQIQ 189 (819)
Q Consensus 117 asgs~Dg~I~IwDi~t~~~i---~~~~~h~~~I~sl~fspd-g~~L~sgs~Dg~I~IwDl~t~---~~i~~~~~h~~~I~ 189 (819)
++|..-+.|++|...++... ..+.+|...|..++|+|. ...|++|+.||+|+|||+|.+ .++. .+.|.+.|+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCcee
Confidence 88888889999999887643 235679999999999994 457889999999999999987 3343 378999999
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCC---CeEEEEeCCCCCCeeEEEEeCCC--CEEEEEECCCEEEEEecCC
Q 003445 190 CIDFHPHEFLLATGSADRTVKFWDLET---FELIGSAGPETSGVRCLTFNPDG--RTLLCGLHESLKVFSWEPI 258 (819)
Q Consensus 190 sl~fspdg~~Lasgs~Dg~I~iwDl~~---~~~l~~~~~~~~~I~sl~fspdg--~~Lasgs~d~I~Vwd~~~~ 258 (819)
.|.|+.+..+||+|+.||+++|||+++ ++++..++.|..+|+++.|+|.. -++++|.++.|.+||+...
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 999999988999999999999999986 56788999999999999999853 3344555668999998643
No 148
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=1.8e-18 Score=178.83 Aligned_cols=239 Identities=25% Similarity=0.437 Sum_probs=192.2
Q ss_pred cCCCEEEEEEeeC---CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCC
Q 003445 15 HSSTVNCLKIGRK---SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSE-VLVAAGAASGTIKLWDLEE 90 (819)
Q Consensus 15 H~~~V~~lafsp~---~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg-~~Lasgs~DG~I~IWDl~s 90 (819)
|...-..++|+.+ +..++|+||.-|.|+|.|+.+++....+.+|...|+.+.|+|+. +++++++.|..|++||+++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 6777888899774 34589999999999999999999999999999999999999965 7999999999999999999
Q ss_pred CeEEEEEc---CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeE------E-------------------E---EE
Q 003445 91 AKIVRTLT---GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC------I-------------------H---TY 139 (819)
Q Consensus 91 ~~~i~~l~---~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~------i-------------------~---~~ 139 (819)
..++..+- +|.+.|.+++|+++|.+|++++.|.+|++|++...+. . - +-
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 99988874 6999999999999999999999999999999973321 0 0 11
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC-CCC-------------eEEEEEecCCCCeEEEEE--eCCCCEEEEE
Q 003445 140 KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDL-TAG-------------KLLHDFKCHEGQIQCIDF--HPHEFLLATG 203 (819)
Q Consensus 140 ~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl-~t~-------------~~i~~~~~h~~~I~sl~f--spdg~~Lasg 203 (819)
.-|...|.|+.|- |+++++-+-++.|..|.. .-+ ..+.+++.....|+-+.| +|-+++||.|
T Consensus 248 diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g 325 (385)
T KOG1034|consen 248 DIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG 325 (385)
T ss_pred ccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhc
Confidence 2367778888887 689999999999999987 211 234455555666776655 5558999999
Q ss_pred ECCCeEEEEECCCCeEEEE--e--CCCCCCeeEEEEeCCCCEEEEEECCCEEEEEec
Q 003445 204 SADRTVKFWDLETFELIGS--A--GPETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (819)
Q Consensus 204 s~Dg~I~iwDl~~~~~l~~--~--~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (819)
...|.|++||++...+... + ......|+..+|+.||.+|+..++++ .||.|+
T Consensus 326 nq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~-~Vwrwd 381 (385)
T KOG1034|consen 326 NQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDG-TVWRWD 381 (385)
T ss_pred cCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCC-cEEEEE
Confidence 9999999999987665211 1 22346789999999999998877764 455554
No 149
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=6.1e-18 Score=172.43 Aligned_cols=244 Identities=21% Similarity=0.438 Sum_probs=196.9
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcC---CCCEEEEEECCCeEEEE
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDS---SEVLVAAGAASGTIKLW 86 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fsp---dg~~Lasgs~DG~I~IW 86 (819)
+.-.+|.-.|..+.|.|-+...+.+++.|.+++|||..+-+....|. ..+.|+.-+|+| ...++++|..+-+|++.
T Consensus 95 ~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLC 173 (397)
T KOG4283|consen 95 QHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLC 173 (397)
T ss_pred cCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEE
Confidence 34457889999999999888899999999999999999998888887 567899999988 34588999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEecCCCE-EEEEECCCcEEEEECCCC-eEEEEEe--------------cCCCCeEEEE
Q 003445 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEF-FASGSLDTNLKIWDIRKK-GCIHTYK--------------GHTRGVNAIR 150 (819)
Q Consensus 87 Dl~s~~~i~~l~~h~~~I~sl~fsp~g~~-Lasgs~Dg~I~IwDi~t~-~~i~~~~--------------~h~~~I~sl~ 150 (819)
|+.+|..-+++.||.+.|.++.|+|...+ |++|+.||.|++||++.- .|...+. .|.+.+..++
T Consensus 174 Di~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla 253 (397)
T KOG4283|consen 174 DIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA 253 (397)
T ss_pred eccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeee
Confidence 99999999999999999999999998886 789999999999999865 4444443 4667899999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEE-EEe--cCCCCe---EEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeC
Q 003445 151 FTPDGRWVVSGGEDNTVKLWDLTAGKLLH-DFK--CHEGQI---QCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG 224 (819)
Q Consensus 151 fspdg~~L~sgs~Dg~I~IwDl~t~~~i~-~~~--~h~~~I---~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~ 224 (819)
|+.+|.++++++.|..+++|+...|+... .+- .|...+ ..+. +-+...++.--.++.+.++++-.+..+..+.
T Consensus 254 ~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~ 332 (397)
T KOG4283|consen 254 WTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS 332 (397)
T ss_pred ecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeee
Confidence 99999999999999999999998875321 111 122110 1122 2233344444456899999999999999999
Q ss_pred CCCCCeeEEEEeCCCCEEEEEECC-CEEEEEe
Q 003445 225 PETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (819)
Q Consensus 225 ~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (819)
.|...|.|..|-|+=+...+|..+ .|..|..
T Consensus 333 ~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 333 THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cccceeeEEeecCchhhhhccccCCccccccc
Confidence 998889999999998888888666 4555554
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=1.6e-18 Score=191.90 Aligned_cols=250 Identities=20% Similarity=0.329 Sum_probs=192.0
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEE--ecCCCCCeEEEEEcCCC-CEEEEEECCCeEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILS--LSGHTSGIDSVSFDSSE-VLVAAGAASGTIK 84 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~--l~~h~~~V~~l~fspdg-~~Lasgs~DG~I~ 84 (819)
++..+.+|.+.|..++|.| +...|++++.|.++++||+.....+.. +.||.+.|.+++|.+.. ..|++|+.||.|.
T Consensus 92 ~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~il 170 (720)
T KOG0321|consen 92 QLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEIL 170 (720)
T ss_pred hhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEE
Confidence 3678889999999999999 888999999999999999998888776 88999999999999955 5889999999999
Q ss_pred EEECCCCe---------------------------EEEEEcCCCCCeEE---EEEecCCCEEEEEEC-CCcEEEEECCCC
Q 003445 85 LWDLEEAK---------------------------IVRTLTGHRSNCIS---VDFHPFGEFFASGSL-DTNLKIWDIRKK 133 (819)
Q Consensus 85 IWDl~s~~---------------------------~i~~l~~h~~~I~s---l~fsp~g~~Lasgs~-Dg~I~IwDi~t~ 133 (819)
|||+.... .+.....+...|.+ +-+..|...||+++. |+.|++||+++.
T Consensus 171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN 250 (720)
T ss_pred EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence 99985221 11112234444544 555668888998887 999999999976
Q ss_pred eEEEEE--------ecC---CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEecCCC--CeEEEEEeCCCC
Q 003445 134 GCIHTY--------KGH---TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK--LLHDFKCHEG--QIQCIDFHPHEF 198 (819)
Q Consensus 134 ~~i~~~--------~~h---~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~--~i~~~~~h~~--~I~sl~fspdg~ 198 (819)
...... ..| ...+.++.....|.+|++.+.|+.|++||+..-. .+..+.++.. .-..-..+|++.
T Consensus 251 ~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~ 330 (720)
T KOG0321|consen 251 YTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC 330 (720)
T ss_pred ccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc
Confidence 544322 223 3457888888889999999999999999998642 3444443321 112234689999
Q ss_pred EEEEEECCCeEEEEECCCCe-EEEEeCCCCCCeeEEEEeCC--CCEEEEEECC-CEEEEEecCCc
Q 003445 199 LLATGSADRTVKFWDLETFE-LIGSAGPETSGVRCLTFNPD--GRTLLCGLHE-SLKVFSWEPIR 259 (819)
Q Consensus 199 ~Lasgs~Dg~I~iwDl~~~~-~l~~~~~~~~~I~sl~fspd--g~~Lasgs~d-~I~Vwd~~~~~ 259 (819)
+|++|+.|...++|.+.+.+ ....+.+|.-.|++++|.|. +..+.+ ++| +++||++..+-
T Consensus 331 ~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~Tc-SdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 331 SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATC-SDDFRVKIWRLSNGL 394 (720)
T ss_pred eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceee-ccCcceEEEeccCch
Confidence 99999999999999998755 34556788889999999874 555555 565 79999986543
No 151
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=4.1e-17 Score=182.22 Aligned_cols=288 Identities=18% Similarity=0.324 Sum_probs=221.6
Q ss_pred eEEEEeccC-CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 8 KLQEFVAHS-STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 8 kl~~~~~H~-~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
....+.+|. +.|.+++|++ +++ |++.+-+|.|.-||+.+.+....+....+.|++++.+|.+..++.|+.||.+..+
T Consensus 60 ~~~vi~g~~drsIE~L~W~e-~~R-LFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~ 137 (691)
T KOG2048|consen 60 LEPVIHGPEDRSIESLAWAE-GGR-LFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDF 137 (691)
T ss_pred eeEEEecCCCCceeeEEEcc-CCe-EEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEE
Confidence 334566665 4899999995 554 7888889999999999999999999999999999999999999999999998888
Q ss_pred ECCCCeEEE--EEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe--------cCCCCeEEEEEcCCCC
Q 003445 87 DLEEAKIVR--TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK--------GHTRGVNAIRFTPDGR 156 (819)
Q Consensus 87 Dl~s~~~i~--~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~--------~h~~~I~sl~fspdg~ 156 (819)
+...++... .+....+.|.++.|+|++..+++|+.||.|++||...+..++... +...-|+++.|-.++
T Consensus 138 s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~- 216 (691)
T KOG2048|consen 138 SIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS- 216 (691)
T ss_pred ecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-
Confidence 888887654 344566899999999999999999999999999999988776322 123347788888554
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeE----EEEeCCCCCCeeE
Q 003445 157 WVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL----IGSAGPETSGVRC 232 (819)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~----l~~~~~~~~~I~s 232 (819)
.|++|...|+|.+||...+.+++.+..|.+.|.+++..+++.++++++.|+.|.-|...+.+. ......|...+++
T Consensus 217 tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs 296 (691)
T KOG2048|consen 217 TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRS 296 (691)
T ss_pred cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCccccee
Confidence 699999999999999999999999999999999999999999999999999999988776533 3334678889999
Q ss_pred EEEeCCCCEEEEEECCC-EEEEEecCCceeeee-eccccceeEeEecCCCEEEEEEcCCeEEEEEecCCc
Q 003445 233 LTFNPDGRTLLCGLHES-LKVFSWEPIRCHDAV-DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISR 300 (819)
Q Consensus 233 l~fspdg~~Lasgs~d~-I~Vwd~~~~~~~~~~-~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~ 300 (819)
++..++ .+++|+.+. +.+-.....+..... ......-..+.....+.|..-..+..+.+|.+...-
T Consensus 297 ~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~ 364 (691)
T KOG2048|consen 297 MAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVI 364 (691)
T ss_pred eeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcc
Confidence 999877 667666553 333332221111111 111111111222345666777777788888777663
No 152
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.1e-17 Score=172.19 Aligned_cols=245 Identities=19% Similarity=0.299 Sum_probs=190.6
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEec
Q 003445 62 IDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG 141 (819)
Q Consensus 62 V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~ 141 (819)
-.|+.|++.|.+|++|+.||.|.|||+.+...-+.+.+|..+|++++|+++|+.|++++.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999889999999999999999999999999999999999999999999887
Q ss_pred CCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEecCCC----CeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 003445 142 HTRGVNAIRFTPDGR-WVVSGGEDNTVKLWDLTAGKLLHDFKCHEG----QIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (819)
Q Consensus 142 h~~~I~sl~fspdg~-~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~----~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~ 216 (819)
..++|+...|+|... ..++.-.+..-.+.++..++....-....+ .-.+..|++.|+++++|...|.+.+||..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 788999999999433 333333333345555544321111111111 123446899999999999999999999999
Q ss_pred CeEEEEeCCCC-CCeeEEEEeCCCCEEEEEECC-CEEEEEecCC----ce---------eeee-eccccceeEeEecCCC
Q 003445 217 FELIGSAGPET-SGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPI----RC---------HDAV-DVGWSRLSDLNVHEGK 280 (819)
Q Consensus 217 ~~~l~~~~~~~-~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~----~~---------~~~~-~~~~s~i~~l~~~dg~ 280 (819)
.+++..++... ..|..+.|+..|++|+..+.| .|+.|+.... +. ++.+ ...|.. ..+..+|.
T Consensus 185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~--ccfs~dge 262 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK--CCFSGDGE 262 (405)
T ss_pred heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh--eeecCCcc
Confidence 99999887766 789999999999999988776 5999987621 11 1111 345553 33446888
Q ss_pred EEEEEEc-CCeEEEEEecCCceeeeeeccc
Q 003445 281 LLGCSYN-QSCVGVWVVDISRIEPYTIGSV 309 (819)
Q Consensus 281 lLa~~~~-Dg~V~IW~ld~~~~~p~~~~~~ 309 (819)
++++++. ...++||.-.+|.+.....|..
T Consensus 263 Yv~a~s~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 263 YVCAGSARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred EEEeccccceeEEEEecCCcceeeeecCCc
Confidence 8876654 5789999999999887766654
No 153
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.79 E-value=2.5e-19 Score=192.07 Aligned_cols=288 Identities=18% Similarity=0.229 Sum_probs=245.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE
Q 003445 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT 138 (819)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~ 138 (819)
.-....+.++.+|++++.|+..|.|..+|+.+++....+. -...|.++.|-.+.++||++ ....++||| ..|..++.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHC 205 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHC 205 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEee
Confidence 4456789999999999999999999999999999888876 45678899998888888887 568899999 56777888
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe
Q 003445 139 YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE 218 (819)
Q Consensus 139 ~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~ 218 (819)
++.|. .|..+.|.|..-+|++++..|.++.-|+.+|+.+..+....+.+..|+-+|-...+-+|..+|+|.+|.....+
T Consensus 206 lk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 206 LKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 88654 58999999998899999999999999999999999999888999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEE--
Q 003445 219 LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWV-- 295 (819)
Q Consensus 219 ~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~-- 295 (819)
++..+..|.++|.++++.++|+|+++++-| .++|||+........+.. -.....+.+.+..+||++..+ .|.||.
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~-~v~iw~d~ 362 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYGD-HVQIWKDA 362 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccceeeecCC-eeeeehhh
Confidence 999999999999999999999999977665 699999998775555444 233455666777788887766 899993
Q ss_pred ec--CCceeeeeecccceeccccccccCCCCCcccccccccccccCCCcccCCCcccccc
Q 003445 296 VD--ISRIEPYTIGSVTRVNGLSESKSSASGNLSVLNENSAKASLGKLSVSQNSDPLVKE 353 (819)
Q Consensus 296 ld--~~~~~p~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (819)
++ ...-.||+.+.... --+....++++..+.+++..++.+.+.+++++||+|.....
T Consensus 363 ~~~s~~~~~pYm~H~~~~-~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~n 421 (545)
T KOG1272|consen 363 LKGSGHGETPYMNHRCGG-PVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDN 421 (545)
T ss_pred hcCCCCCCcchhhhccCc-ccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccC
Confidence 22 46778888888766 44667788899999999999999999999999999876553
No 154
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=9.1e-18 Score=179.71 Aligned_cols=241 Identities=19% Similarity=0.301 Sum_probs=184.6
Q ss_pred CCeEEEEEcC-------CCCEEEEEECCCeEEEEECCCC---eEEE------------------EEcCCCCCeEEEEEec
Q 003445 60 SGIDSVSFDS-------SEVLVAAGAASGTIKLWDLEEA---KIVR------------------TLTGHRSNCISVDFHP 111 (819)
Q Consensus 60 ~~V~~l~fsp-------dg~~Lasgs~DG~I~IWDl~s~---~~i~------------------~l~~h~~~I~sl~fsp 111 (819)
....|++|.. -|+|+|.|+.|..|.|||+.-- .+.. ...+|.+.|.++.|+.
T Consensus 174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~ 253 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR 253 (463)
T ss_pred CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc
Confidence 3456777732 3679999999999999998521 0111 1236888888999987
Q ss_pred CC-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCe-EEEEEecCCCCe
Q 003445 112 FG-EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGK-LLHDFKCHEGQI 188 (819)
Q Consensus 112 ~g-~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fsp-dg~~L~sgs~Dg~I~IwDl~t~~-~i~~~~~h~~~I 188 (819)
.- +.||+|+.|.+|++||+.++++..++..|...|.++.|+| ...+|++|+.|+++.+.|+|... .-..++ ..+.|
T Consensus 254 ~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~V 332 (463)
T KOG0270|consen 254 NFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEV 332 (463)
T ss_pred ccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccce
Confidence 54 4799999999999999999999999999999999999999 56789999999999999999432 222333 46789
Q ss_pred EEEEEeCC-CCEEEEEECCCeEEEEECCCC-eEEEEeCCCCCCeeEEEEeCCCCE-EEEEECC-CEEEEEecCCceeeee
Q 003445 189 QCIDFHPH-EFLLATGSADRTVKFWDLETF-ELIGSAGPETSGVRCLTFNPDGRT-LLCGLHE-SLKVFSWEPIRCHDAV 264 (819)
Q Consensus 189 ~sl~fspd-g~~Lasgs~Dg~I~iwDl~~~-~~l~~~~~~~~~I~sl~fspdg~~-Lasgs~d-~I~Vwd~~~~~~~~~~ 264 (819)
-.++|+|. ...++++..||+|+-+|+++. +++.+++.|.++|.++++++.-.. |++++.+ .+++|++.......+.
T Consensus 333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~ 412 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK 412 (463)
T ss_pred EEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc
Confidence 99999996 567788889999999999874 899999999999999999987554 4455544 6999999865543222
Q ss_pred --eccccceeEeEe--cCCCEEEEEEcCCeEEEEEecCCce
Q 003445 265 --DVGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVVDISRI 301 (819)
Q Consensus 265 --~~~~s~i~~l~~--~dg~lLa~~~~Dg~V~IW~ld~~~~ 301 (819)
......+.++.. +.-.+++.|+..+.++|||+-+...
T Consensus 413 ~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 413 EHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred cccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 122222333333 4457888999999999999876543
No 155
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=5.3e-18 Score=187.39 Aligned_cols=281 Identities=17% Similarity=0.310 Sum_probs=217.2
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003445 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL 97 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l 97 (819)
.|+.++|-|++..++++++ ..+.+||..+|..+.++++|.+.|+|++|+.||+.+++|+.|..|.+|.-.-.-. ..+
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LKY 90 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-eee
Confidence 8999999997777666554 4699999999999999999999999999999999999999999999998543222 223
Q ss_pred cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003445 98 TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL 177 (819)
Q Consensus 98 ~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~ 177 (819)
.|.+.|.|+.|+|-...|++++.. ..-+|....+... ..+ ....+.+++|..||.+|+.|-.+|+|.+-+-. ++.
T Consensus 91 -SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEe 165 (1081)
T KOG1538|consen 91 -SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEE 165 (1081)
T ss_pred -ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-hhh-hheeEEEeeecCCCcEEEEeccCceEEeecCC-CCc
Confidence 499999999999999999998763 4668887654432 222 24568899999999999999999999998644 433
Q ss_pred EEEEe---cCCCCeEEEEEeCCC-----CEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-
Q 003445 178 LHDFK---CHEGQIQCIDFHPHE-----FLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE- 248 (819)
Q Consensus 178 i~~~~---~h~~~I~sl~fspdg-----~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d- 248 (819)
...+. +.+.+|++++|+|.. ..+++.....++.+|.+. |+.+..-+...-...|+.+.++|.+++.|+.+
T Consensus 166 k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk 244 (1081)
T KOG1538|consen 166 KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDK 244 (1081)
T ss_pred ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCC
Confidence 33333 367789999999963 478888889999999876 66666555555667899999999999877555
Q ss_pred CEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCCceeeeeecc
Q 003445 249 SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGS 308 (819)
Q Consensus 249 ~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~~~p~~~~~ 308 (819)
.+++|--+..+.- ++.....-+..+.. ++++.++.|..||+|..|++-.+.+.-++..+
T Consensus 245 ~L~~fTR~GvrLG-Tvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~R 304 (1081)
T KOG1538|consen 245 QLSLFTRDGVRLG-TVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDR 304 (1081)
T ss_pred ceEEEeecCeEEe-eccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHh
Confidence 6888865543332 22222233444444 78999999999999999999888876655443
No 156
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.78 E-value=3.2e-18 Score=184.30 Aligned_cols=218 Identities=17% Similarity=0.328 Sum_probs=187.1
Q ss_pred EEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003445 20 NCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (819)
Q Consensus 20 ~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~ 99 (819)
.|++... ...|+++||..+.|+|||+....+...+++|...|+++.++....||++++..|.|.|..+.++.....|..
T Consensus 83 ~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 83 FCVACAS-QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred HHHhhhh-cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec
Confidence 3444433 336899999999999999997778888999999999999999999999999999999999999887777764
Q ss_pred C-CCCeEEEEEecCCCE-EEEEECCCcEEEEECCCCeEEEEE-ecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC
Q 003445 100 H-RSNCISVDFHPFGEF-FASGSLDTNLKIWDIRKKGCIHTY-KGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAG 175 (819)
Q Consensus 100 h-~~~I~sl~fsp~g~~-Lasgs~Dg~I~IwDi~t~~~i~~~-~~h~~~I~sl~fsp-dg~~L~sgs~Dg~I~IwDl~t~ 175 (819)
. ...|.-+.|+|..++ |.+++.+|.|.+||+....++..+ +.|..+...|+|+| +..+|++.+.|..|.+||.+..
T Consensus 162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ 241 (673)
T ss_pred CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc
Confidence 4 345668999998875 667899999999999988777654 57999999999999 5567889999999999999987
Q ss_pred eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC-eEEEEeCCCCCCeeEEEEeCCC
Q 003445 176 KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF-ELIGSAGPETSGVRCLTFNPDG 239 (819)
Q Consensus 176 ~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~-~~l~~~~~~~~~I~sl~fspdg 239 (819)
+....+. ...+...++|.++|.+|++|...|.|..||++.. .++..+..|...|++++|-+.-
T Consensus 242 ~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 242 ASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 7666665 4678899999999999999999999999999864 5778888899999999998765
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.78 E-value=3e-17 Score=169.96 Aligned_cols=290 Identities=20% Similarity=0.388 Sum_probs=215.3
Q ss_pred cccceEE--EEeccCCCEEEEEEee----CCCcEEEEEeCCCeEEEEECCCCceEE---Eec--CCCCCeEEEEEcCC--
Q 003445 4 KRAYKLQ--EFVAHSSTVNCLKIGR----KSSRVLVTGGEDHKVNLWAIGKPNAIL---SLS--GHTSGIDSVSFDSS-- 70 (819)
Q Consensus 4 kr~~kl~--~~~~H~~~V~~lafsp----~~~~~Latgs~Dg~V~IWdl~~~~~i~---~l~--~h~~~V~~l~fspd-- 70 (819)
|+.|+.. -...|+.+|..++|++ +...+++++|. ..+.+|.......+. .+. .|.....-++|+-+
T Consensus 24 k~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~ 102 (385)
T KOG1034|consen 24 KRSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSN 102 (385)
T ss_pred ccceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCC
Confidence 3444443 2346889999999985 34457777776 468999875443222 222 36777888888653
Q ss_pred --CCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeEEEEEe---cCCC
Q 003445 71 --EVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTYK---GHTR 144 (819)
Q Consensus 71 --g~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~t~~~i~~~~---~h~~ 144 (819)
.-++++|+.-|.|+|.|+.+++....+.+|...|..+.|+|+. +++++++.|..|++|++++..|+..+. +|.+
T Consensus 103 ~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd 182 (385)
T KOG1034|consen 103 TGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD 182 (385)
T ss_pred CCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC
Confidence 3489999999999999999999999999999999999999976 589999999999999999999998874 6999
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE------EE----------------------EEecCCCCeEEEEEeCC
Q 003445 145 GVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL------LH----------------------DFKCHEGQIQCIDFHPH 196 (819)
Q Consensus 145 ~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~------i~----------------------~~~~h~~~I~sl~fspd 196 (819)
.|.++.|+++|.+|++++.|..|++|++...+. .. +-..|...|.|+.|-
T Consensus 183 eVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~-- 260 (385)
T KOG1034|consen 183 EVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF-- 260 (385)
T ss_pred cEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--
Confidence 999999999999999999999999999974211 10 111244455555554
Q ss_pred CCEEEEEECCCeEEEEEC-CCCe-------------EEEEeCCCCCCeeEEE--EeCCCCEEEEEECC-CEEEEEecCCc
Q 003445 197 EFLLATGSADRTVKFWDL-ETFE-------------LIGSAGPETSGVRCLT--FNPDGRTLLCGLHE-SLKVFSWEPIR 259 (819)
Q Consensus 197 g~~Lasgs~Dg~I~iwDl-~~~~-------------~l~~~~~~~~~I~sl~--fspdg~~Lasgs~d-~I~Vwd~~~~~ 259 (819)
|.++++-+.++.|..|-. +-.+ .+..+......|+-+. |++-++.|+.|... .+.+||++...
T Consensus 261 gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 261 GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNE 340 (385)
T ss_pred hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCC
Confidence 578999999999999987 2111 2333444455566655 45668899988765 59999998765
Q ss_pred eeee----eeccccceeEeEe-cCCCEEEEEEcCCeEEEEEe
Q 003445 260 CHDA----VDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 296 (819)
Q Consensus 260 ~~~~----~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~l 296 (819)
.... -......+....+ .|+.+|+...+|++|.-||-
T Consensus 341 p~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 341 PPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 5321 1233344544444 78999999999999988874
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.2e-18 Score=204.44 Aligned_cols=244 Identities=23% Similarity=0.373 Sum_probs=197.9
Q ss_pred CCCEEEEEEeeCCCc---EEEEEeCCCeEEEEECCCC------ceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEE
Q 003445 16 SSTVNCLKIGRKSSR---VLVTGGEDHKVNLWAIGKP------NAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKL 85 (819)
Q Consensus 16 ~~~V~~lafsp~~~~---~Latgs~Dg~V~IWdl~~~------~~i~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~I 85 (819)
...-++++|++.+.. +|+.|.+||.|.+||...- ..+.....|++.|..+.|++... +|++|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 346789999986555 6999999999999998542 33456678999999999999655 9999999999999
Q ss_pred EECCCCeEEEEE--cCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeEEEEEecCCC--CeEEEEEcCCCC-EEE
Q 003445 86 WDLEEAKIVRTL--TGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTYKGHTR--GVNAIRFTPDGR-WVV 159 (819)
Q Consensus 86 WDl~s~~~i~~l--~~h~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~--~I~sl~fspdg~-~L~ 159 (819)
||+..-+.-..+ ....+.|.+++|+..- ..|++++.+|.+.|||++..+.+..+..+.. .+..++|+|+.. .|+
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 999875443333 2245789999998654 4688999999999999999988877765554 478999999753 566
Q ss_pred EEECCC---eEEEEECCCC-eEEEEEecCCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEE
Q 003445 160 SGGEDN---TVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPHE-FLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLT 234 (819)
Q Consensus 160 sgs~Dg---~I~IwDl~t~-~~i~~~~~h~~~I~sl~fspdg-~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~ 234 (819)
+++.|. .|.+||+|.- ..++.+.+|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+.....++..+.
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~ 303 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ 303 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee
Confidence 665543 6999999854 4677788999999999999976 8999999999999999999999999999899999999
Q ss_pred EeCCCC-EEEEE-ECCCEEEEEecCCc
Q 003445 235 FNPDGR-TLLCG-LHESLKVFSWEPIR 259 (819)
Q Consensus 235 fspdg~-~Lasg-s~d~I~Vwd~~~~~ 259 (819)
|+|... .++++ .++.|.||.+....
T Consensus 304 w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 304 WCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCcchhhhheeccceeeeeeecCC
Confidence 999876 44444 45579999987644
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.77 E-value=1.5e-17 Score=179.20 Aligned_cols=259 Identities=19% Similarity=0.305 Sum_probs=198.9
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC--ce--EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003445 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP--NA--ILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI 93 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~--~~--i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~ 93 (819)
.|..+.|...+.-+++..+.|..|++|.-... +. +....+ ..-.|++......|+++|+..|.|+|||++...+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence 48899998733333444467889999975322 12 222222 2445555555668999999999999999998778
Q ss_pred EEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCCE-EEEEECCCeEEEEE
Q 003445 94 VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT-RGVNAIRFTPDGRW-VVSGGEDNTVKLWD 171 (819)
Q Consensus 94 i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~-~~I~sl~fspdg~~-L~sgs~Dg~I~IwD 171 (819)
.+.+++|.+.|+++.++-...|||+++..|.|.|..+.++..-..|.... ..|.-+.|++..++ |.+++++|.|.+||
T Consensus 114 hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD 193 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD 193 (673)
T ss_pred hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence 88999999999999999999999999999999999999887777776443 34668999996664 56789999999999
Q ss_pred CCCCeEEEEEe-cCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-
Q 003445 172 LTAGKLLHDFK-CHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE- 248 (819)
Q Consensus 172 l~t~~~i~~~~-~h~~~I~sl~fspd-g~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d- 248 (819)
+....+++.+. .|..+...|+|+|. +.+|++.+.|..|.+||+........+. ...+...++|.++|.+|++|...
T Consensus 194 v~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G 272 (673)
T KOG4378|consen 194 VQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKG 272 (673)
T ss_pred ccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCc
Confidence 98877766654 68999999999994 7788999999999999999766655543 35788999999999999999766
Q ss_pred CEEEEEecCCc-eeeeeeccccceeEeEecCC
Q 003445 249 SLKVFSWEPIR-CHDAVDVGWSRLSDLNVHEG 279 (819)
Q Consensus 249 ~I~Vwd~~~~~-~~~~~~~~~s~i~~l~~~dg 279 (819)
.+..||+...+ ...+...+...+..+.+...
T Consensus 273 ~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 273 ELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred eEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 58889987643 44455555555555555433
No 160
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.77 E-value=1.9e-17 Score=177.77 Aligned_cols=256 Identities=23% Similarity=0.335 Sum_probs=202.8
Q ss_pred CCCcccceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce--EEEecCCCCCeEEEEEcCCCCEEEEEE
Q 003445 1 MTTKRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA--ILSLSGHTSGIDSVSFDSSEVLVAAGA 78 (819)
Q Consensus 1 M~tkr~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~--i~~l~~h~~~V~~l~fspdg~~Lasgs 78 (819)
|+.+....+.-|..|+.+|.++.|+|.+...+++.+.||+|++-|++.... +..+......+..+.|+.+...++.|.
T Consensus 219 ~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~ 298 (498)
T KOG4328|consen 219 TQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGD 298 (498)
T ss_pred CCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEee
Confidence 345666778889999999999999998888899999999999999976644 333333456778888988888888888
Q ss_pred CCCeEEEEECCCCeE-EEEEcCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCeE----EEEEecCCCCeEEEEEc
Q 003445 79 ASGTIKLWDLEEAKI-VRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGC----IHTYKGHTRGVNAIRFT 152 (819)
Q Consensus 79 ~DG~I~IWDl~s~~~-i~~l~~h~~~I~sl~fsp~g~-~Lasgs~Dg~I~IwDi~t~~~----i~~~~~h~~~I~sl~fs 152 (819)
.-|...+||++++.. ...+.-|...|.+++++|... +||+++.|++++|||++.... +...-.|...|.+..|+
T Consensus 299 ~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS 378 (498)
T KOG4328|consen 299 NVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS 378 (498)
T ss_pred cccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence 889999999987654 666777888999999999765 699999999999999985322 22233599999999999
Q ss_pred CCCCEEEEEECCCeEEEEECC----CCeEEEEEecCCC------CeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003445 153 PDGRWVVSGGEDNTVKLWDLT----AGKLLHDFKCHEG------QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS 222 (819)
Q Consensus 153 pdg~~L~sgs~Dg~I~IwDl~----t~~~i~~~~~h~~------~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~ 222 (819)
|.+-.|++.+.|..|+|||.. .-.....+. |.. ......|.|+..++++|-.-..|-|||-..++.+..
T Consensus 379 Ps~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e 457 (498)
T KOG4328|consen 379 PSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE 457 (498)
T ss_pred CCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeee
Confidence 988889999999999999984 223333332 221 234568999999999999999999999999998877
Q ss_pred eCCC-CCCeeE-EEEeCCCCEEEEEECCCEEEEEecC
Q 003445 223 AGPE-TSGVRC-LTFNPDGRTLLCGLHESLKVFSWEP 257 (819)
Q Consensus 223 ~~~~-~~~I~s-l~fspdg~~Lasgs~d~I~Vwd~~~ 257 (819)
+... ...|.+ ..|+|-+..+++|+..+.+||-|..
T Consensus 458 l~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 458 LHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred ccCccccccccceeecccccceeccCCccceEEEEec
Confidence 5443 335655 5799999888888777777776654
No 161
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.76 E-value=8.3e-17 Score=179.90 Aligned_cols=287 Identities=17% Similarity=0.299 Sum_probs=220.2
Q ss_pred eccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC--ceEEE-----ecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP--NAILS-----LSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (819)
Q Consensus 13 ~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~--~~i~~-----l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (819)
.||.+.|+++.|+| .+..|.+++.|.++.+|...+. -.+.. ..+...+.....|+|++..+++-+..|-.++
T Consensus 264 ~GHeDWV~sv~W~p-~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHP-EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred cCcccceEEEEEcc-chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 39999999999999 5667899999999999987554 22222 2244567899999999999999999999999
Q ss_pred EECCCC---eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC--------------------C----------
Q 003445 86 WDLEEA---KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR--------------------K---------- 132 (819)
Q Consensus 86 WDl~s~---~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~--------------------t---------- 132 (819)
|..+.. .....+.||.+.|..++|+|.|.+|++.+.|-+-+++-.- .
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~F 422 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQF 422 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCcee
Confidence 983332 3344567999999999999999999999998765554211 0
Q ss_pred -----CeE------------------------------------------------------------------------
Q 003445 133 -----KGC------------------------------------------------------------------------ 135 (819)
Q Consensus 133 -----~~~------------------------------------------------------------------------ 135 (819)
.+.
T Consensus 423 VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~e 502 (764)
T KOG1063|consen 423 VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTE 502 (764)
T ss_pred eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccC
Confidence 000
Q ss_pred ---------------EEEEecCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEEEecCCCCeEEEEEeC
Q 003445 136 ---------------IHTYKGHTRGVNAIRFTPDGRWVVSGGED-----NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHP 195 (819)
Q Consensus 136 ---------------i~~~~~h~~~I~sl~fspdg~~L~sgs~D-----g~I~IwDl~t~~~i~~~~~h~~~I~sl~fsp 195 (819)
++.+.+|...|.+++.+|+|+++++++.. ..|++|+..+...+..+.+|.-.|+.++|+|
T Consensus 503 PP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp 582 (764)
T KOG1063|consen 503 PPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP 582 (764)
T ss_pred CChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC
Confidence 00012577789999999999999998864 4699999999888889999999999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCe----EEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCC--ceeeee--ec
Q 003445 196 HEFLLATGSADRTVKFWDLETFE----LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPI--RCHDAV--DV 266 (819)
Q Consensus 196 dg~~Lasgs~Dg~I~iwDl~~~~----~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~--~~~~~~--~~ 266 (819)
||++|++.+.|+++.+|...... .....+.|..-|.++.|+|++.++++++.| .++||..... ++...+ ..
T Consensus 583 dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~ 662 (764)
T KOG1063|consen 583 DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLK 662 (764)
T ss_pred CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhc
Confidence 99999999999999999875432 123367888889999999999999999887 6999998776 322211 11
Q ss_pred cccceeEeEe------cCCCEEEEEEcCCeEEEEEecCCc
Q 003445 267 GWSRLSDLNV------HEGKLLGCSYNQSCVGVWVVDISR 300 (819)
Q Consensus 267 ~~s~i~~l~~------~dg~lLa~~~~Dg~V~IW~ld~~~ 300 (819)
....++.+.+ ..+.++++|...|.|.+|......
T Consensus 663 ~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~ 702 (764)
T KOG1063|consen 663 FSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREH 702 (764)
T ss_pred cCCceeeEEeeccccccccceEEEEecccEEEEEeccccc
Confidence 1122333333 224588999999999999876433
No 162
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=9.5e-17 Score=165.36 Aligned_cols=236 Identities=16% Similarity=0.287 Sum_probs=188.6
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC---ceEE---------EecCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP---NAIL---------SLSGHTSGIDSVSFDSSEVLVAAGAASGTIK 84 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~---~~i~---------~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (819)
+.-+.++|.||-..+++......++++|.+.+. .... .-..|.-.|..+-...++.+|++++.|..|.
T Consensus 133 dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~ 212 (420)
T KOG2096|consen 133 DHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKIC 212 (420)
T ss_pred CCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEE
Confidence 356789999977777777777788999987322 1111 1123566777788888899999999999999
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC---CC-----eEEEEEecCCCCeEEEEEcCCCC
Q 003445 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR---KK-----GCIHTYKGHTRGVNAIRFTPDGR 156 (819)
Q Consensus 85 IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~---t~-----~~i~~~~~h~~~I~sl~fspdg~ 156 (819)
+|++. |+.+..+......-+..+.+|+|+++++++..--|++|.+- .| ..+..+++|...|..++|+++..
T Consensus 213 lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~ 291 (420)
T KOG2096|consen 213 LWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST 291 (420)
T ss_pred EEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc
Confidence 99999 99999888777777888999999999999999999999863 22 23567889999999999999999
Q ss_pred EEEEEECCCeEEEEECCC-------CeEEEEEe----cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe-C
Q 003445 157 WVVSGGEDNTVKLWDLTA-------GKLLHDFK----CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA-G 224 (819)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t-------~~~i~~~~----~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~-~ 224 (819)
.+++.+.||.++|||..- .+.+.++. ...+.-..+.++|+|..||.+. ...+++|..++++....+ .
T Consensus 292 r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~ 370 (420)
T KOG2096|consen 292 RAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELED 370 (420)
T ss_pred eeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHH
Confidence 999999999999999852 12233221 1223345899999999998875 567999999998877665 4
Q ss_pred CCCCCeeEEEEeCCCCEEEEEECCCEEEEE
Q 003445 225 PETSGVRCLTFNPDGRTLLCGLHESLKVFS 254 (819)
Q Consensus 225 ~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd 254 (819)
.|...|.+++|+++|++++++++..++++.
T Consensus 371 ~h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 371 IHSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred hhcCceeeEEecCCCcEEeeecceeeeeec
Confidence 688899999999999999999888888876
No 163
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=3.5e-18 Score=200.53 Aligned_cols=280 Identities=18% Similarity=0.329 Sum_probs=212.1
Q ss_pred EEEEEeeCCCcEEEEEe----------CCCeEEEEECCC--Cc----eEEEecCCCCCeEEEEEcCCCCE----EEEEEC
Q 003445 20 NCLKIGRKSSRVLVTGG----------EDHKVNLWAIGK--PN----AILSLSGHTSGIDSVSFDSSEVL----VAAGAA 79 (819)
Q Consensus 20 ~~lafsp~~~~~Latgs----------~Dg~V~IWdl~~--~~----~i~~l~~h~~~V~~l~fspdg~~----Lasgs~ 79 (819)
..++|+|.+..++++|. .+.++.||.+.. .. .+..+. -....+.++|.+.+.. |+.|..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 35789997655777663 345666665532 22 222222 3457889999887654 889999
Q ss_pred CCeEEEEECCCC------eEEEEEcCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCeEEEEEe--cCCCCeEEEE
Q 003445 80 SGTIKLWDLEEA------KIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYK--GHTRGVNAIR 150 (819)
Q Consensus 80 DG~I~IWDl~s~------~~i~~l~~h~~~I~sl~fsp~g~-~Lasgs~Dg~I~IwDi~t~~~i~~~~--~h~~~I~sl~ 150 (819)
||.|.+||...- ..+.+...|.+.|..++|++... .||+|+.||.|.|||+.+.+.-..+. .....|.+++
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 999999998642 34566778999999999999765 99999999999999998755444442 2456799999
Q ss_pred EcC-CCCEEEEEECCCeEEEEECCCCeEEEEEecCCC--CeEEEEEeCCC-CEEEEEECCC---eEEEEECCCC-eEEEE
Q 003445 151 FTP-DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEG--QIQCIDFHPHE-FLLATGSADR---TVKFWDLETF-ELIGS 222 (819)
Q Consensus 151 fsp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~--~I~sl~fspdg-~~Lasgs~Dg---~I~iwDl~~~-~~l~~ 222 (819)
|+. ..+.|++++.+|.+.|||++..+.+..+..+.+ .+..+.|||+. ..|++++.|. .|.+||++.- ..+..
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~ 248 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI 248 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence 987 455788899999999999999988887776544 47889999984 4566665543 6999999863 46677
Q ss_pred eCCCCCCeeEEEEeCCC-CEEEEE-ECCCEEEEEecCCceeeeeeccccceeEeEe--cCCCEEEEEEcCCeEEEEEecC
Q 003445 223 AGPETSGVRCLTFNPDG-RTLLCG-LHESLKVFSWEPIRCHDAVDVGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 223 ~~~~~~~I~sl~fspdg-~~Lasg-s~d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~--~dg~lLa~~~~Dg~V~IW~ld~ 298 (819)
+..|..+|.++.|++.+ .+|+++ .++.+.+|+.++++.+..+.....-..++.+ .+-.++++++-||.|.|+.+..
T Consensus 249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 78999999999999977 566654 4447999999998888888775555556555 3456899999999999998877
Q ss_pred Cc
Q 003445 299 SR 300 (819)
Q Consensus 299 ~~ 300 (819)
..
T Consensus 329 ~~ 330 (1049)
T KOG0307|consen 329 TD 330 (1049)
T ss_pred CC
Confidence 66
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.2e-17 Score=183.22 Aligned_cols=251 Identities=22% Similarity=0.333 Sum_probs=198.5
Q ss_pred EEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC--------CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCe
Q 003445 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK--------PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGT 82 (819)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~--------~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~ 82 (819)
++..|.+.|+.++|+| ....|++++.||.|.+|++++ -+.+.+|.+|.++|.|+++.+++..+++|+.||+
T Consensus 289 tl~s~~d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHP-SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCC-CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 7788999999999999 777899999999999999932 3568899999999999999999999999999999
Q ss_pred EEEEECCCC----------eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEec--CCCCeEEEE
Q 003445 83 IKLWDLEEA----------KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG--HTRGVNAIR 150 (819)
Q Consensus 83 I~IWDl~s~----------~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~--h~~~I~sl~ 150 (819)
|+.|++... .....+.||.+.++.+++++....|++++.||++++|+...... .++.. ..+.-.++.
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 999966421 23456889999999999999999999999999999999876655 33322 122234555
Q ss_pred EcCCC-CEEEEEECCCeEEEEECCCCeEEEEEecC-------CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003445 151 FTPDG-RWVVSGGEDNTVKLWDLTAGKLLHDFKCH-------EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS 222 (819)
Q Consensus 151 fspdg-~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h-------~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~ 222 (819)
|-... ...++...-+.--++|+..+..+..+... ...+..+.++|...+.+++..|+.|+++|..++.+++.
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence 54322 23333333344444555544444444321 13477889999999999999999999999999999999
Q ss_pred eCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeee
Q 003445 223 AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDA 263 (819)
Q Consensus 223 ~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~ 263 (819)
...|...++++++.|+|-+|++++.+ .+.+|.++...|...
T Consensus 527 ~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred eeeccceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence 99999999999999999999999877 699999887766543
No 165
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.74 E-value=1e-16 Score=176.54 Aligned_cols=126 Identities=21% Similarity=0.382 Sum_probs=106.4
Q ss_pred ccceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEE------EecCCCCCeEEEEEcCCCCEEEEEE
Q 003445 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL------SLSGHTSGIDSVSFDSSEVLVAAGA 78 (819)
Q Consensus 5 r~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~------~l~~h~~~V~~l~fspdg~~Lasgs 78 (819)
+...+-.+.+|.+.|+.+.|+|-...+|+||+.|..|+||.+..+-... .+.+..-.|.|+.|+|...-|+..+
T Consensus 68 ~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~ 147 (1012)
T KOG1445|consen 68 RTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASG 147 (1012)
T ss_pred cccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEec
Confidence 3446678889999999999999888999999999999999997442211 2223344789999999766555666
Q ss_pred CCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 003445 79 ASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDI 130 (819)
Q Consensus 79 ~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi 130 (819)
..|.++|||+.+++.+..+.+|.+.|.+..|+.||..|++++.|..|+|||.
T Consensus 148 a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDP 199 (1012)
T KOG1445|consen 148 AHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDP 199 (1012)
T ss_pred cCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCC
Confidence 7899999999999999999999999999999999999999999998888875
No 166
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=1.2e-16 Score=168.66 Aligned_cols=206 Identities=17% Similarity=0.367 Sum_probs=171.0
Q ss_pred EEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC-------ceEEEecCCCCCeEEEEEcCCC-CEEEEEECCCe
Q 003445 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-------NAILSLSGHTSGIDSVSFDSSE-VLVAAGAASGT 82 (819)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~-------~~i~~l~~h~~~V~~l~fspdg-~~Lasgs~DG~ 82 (819)
.+-||+++|..++|+|.+...+|+|++|.+|.||.+..+ +.+..+.+|...|.-++|+|.. +.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 466899999999999999999999999999999998543 4567888999999999999954 67889999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCC-eEEEEEcCCCCEEEEE
Q 003445 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRG-VNAIRFTPDGRWVVSG 161 (819)
Q Consensus 83 I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~-I~sl~fspdg~~L~sg 161 (819)
|.+||+.+|+.+.++. |.+.|+++.|+.+|.+|++++.|..|+|||.++++.+..-.+|.+. -....|..+|..+.+|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999998888 9999999999999999999999999999999999999888777753 4456677888855555
Q ss_pred E---CCCeEEEEECCCC---eEEEEEecCCCCeEEEEEeCCCCEEEE-EECCCeEEEEECCCCe
Q 003445 162 G---EDNTVKLWDLTAG---KLLHDFKCHEGQIQCIDFHPHEFLLAT-GSADRTVKFWDLETFE 218 (819)
Q Consensus 162 s---~Dg~I~IwDl~t~---~~i~~~~~h~~~I~sl~fspdg~~Las-gs~Dg~I~iwDl~~~~ 218 (819)
. .+.++-+||..+- -...++.. ...|.---|.++..+++. |-.|+.|+.|.+.+..
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 4 3678999987653 23444543 345555567888776654 5579999999998755
No 167
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.6e-16 Score=165.27 Aligned_cols=289 Identities=17% Similarity=0.262 Sum_probs=212.3
Q ss_pred ccceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC------CCceEEEec-CCCCCeEEEEEcCCCCEEEEE
Q 003445 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG------KPNAILSLS-GHTSGIDSVSFDSSEVLVAAG 77 (819)
Q Consensus 5 r~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~------~~~~i~~l~-~h~~~V~~l~fspdg~~Lasg 77 (819)
|.+..+.+.+|.+.|+++.|+. ++++|++|+.|..+.+|++. ..+++.... .|...|.|++|....++|++|
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred cchhhhhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecC
Confidence 4445567889999999999998 68999999999999999984 345554443 355899999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEEcC--CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe-EE--EEEecCCCCeEEEEEc
Q 003445 78 AASGTIKLWDLEEAKIVRTLTG--HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG-CI--HTYKGHTRGVNAIRFT 152 (819)
Q Consensus 78 s~DG~I~IWDl~s~~~i~~l~~--h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~-~i--~~~~~h~~~I~sl~fs 152 (819)
+.+|+|.+.|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.+|.|.+||++... .+ ............+.|+
T Consensus 124 ~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~ 203 (609)
T KOG4227|consen 124 ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFH 203 (609)
T ss_pred CCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeec
Confidence 9999999999999998877762 33589999999999999999999999999998654 22 2223345668889999
Q ss_pred CC-CCEEEEEECCCeEEEEECCCCeE-EEE---EecC---CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeE-EEEe
Q 003445 153 PD-GRWVVSGGEDNTVKLWDLTAGKL-LHD---FKCH---EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL-IGSA 223 (819)
Q Consensus 153 pd-g~~L~sgs~Dg~I~IwDl~t~~~-i~~---~~~h---~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~-l~~~ 223 (819)
|. ..+|++.+..+-+-+||++.... +.. +.+- ...-.++.|+|+|+.|.+--....-.+||+-+..+ +..+
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence 94 56777888889999999986432 211 1111 12235788999999888876666677888877443 3333
Q ss_pred CCC------CCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCc-----------------------eeeeeeccccceeE
Q 003445 224 GPE------TSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIR-----------------------CHDAVDVGWSRLSD 273 (819)
Q Consensus 224 ~~~------~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~-----------------------~~~~~~~~~s~i~~ 273 (819)
... ...+.+++|..|- .+++|+++ +|++|.+.... .+.++..+.+....
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ 362 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ 362 (609)
T ss_pred cCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence 321 1246778887554 48888887 79999875321 11234555555555
Q ss_pred eEe-cCCCEEEEEEcCCeEEEEE
Q 003445 274 LNV-HEGKLLGCSYNQSCVGVWV 295 (819)
Q Consensus 274 l~~-~dg~lLa~~~~Dg~V~IW~ 295 (819)
+.+ +...+|++++-.+.++||.
T Consensus 363 VRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 363 VRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eeecCCcceEeccchhhheeccc
Confidence 555 4456777777889999994
No 168
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=8.1e-15 Score=161.70 Aligned_cols=265 Identities=15% Similarity=0.222 Sum_probs=180.1
Q ss_pred EEEEEeCCCeEEEEECCC-Cc--eEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECC-CCeE--EEEEcCCCCC
Q 003445 31 VLVTGGEDHKVNLWAIGK-PN--AILSLSGHTSGIDSVSFDSSEVLVAAGA-ASGTIKLWDLE-EAKI--VRTLTGHRSN 103 (819)
Q Consensus 31 ~Latgs~Dg~V~IWdl~~-~~--~i~~l~~h~~~V~~l~fspdg~~Lasgs-~DG~I~IWDl~-s~~~--i~~l~~h~~~ 103 (819)
++++...++.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|++. +++. +.... ....
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~ 81 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGS 81 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCC
Confidence 345557789999999963 32 444444 446678899999999887764 47899999997 3432 22222 2335
Q ss_pred eEEEEEecCCCEEEEEEC-CCcEEEEECCCCe----EEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeE
Q 003445 104 CISVDFHPFGEFFASGSL-DTNLKIWDIRKKG----CIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLWDLTAGKL 177 (819)
Q Consensus 104 I~sl~fsp~g~~Lasgs~-Dg~I~IwDi~t~~----~i~~~~~h~~~I~sl~fspdg~~L~sgs-~Dg~I~IwDl~t~~~ 177 (819)
...++|+|++++|++++. ++.|.+|++.+.. .+..+. +.....+++++|+|+++++++ .++.|.+||+.+...
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence 678999999998888764 8899999997432 233333 234467889999999887655 568999999986432
Q ss_pred EEE-----Ee-cCCCCeEEEEEeCCCCEEEEEEC-CCeEEEEECCC--C--eEEEEeCCC------CCCeeEEEEeCCCC
Q 003445 178 LHD-----FK-CHEGQIQCIDFHPHEFLLATGSA-DRTVKFWDLET--F--ELIGSAGPE------TSGVRCLTFNPDGR 240 (819)
Q Consensus 178 i~~-----~~-~h~~~I~sl~fspdg~~Lasgs~-Dg~I~iwDl~~--~--~~l~~~~~~------~~~I~sl~fspdg~ 240 (819)
+.. .. ........+.|+|+|++++++.. ++.|.+||+.. + +.+..+... ......+.|+|+|+
T Consensus 161 l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 161 LVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR 240 (330)
T ss_pred ccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence 211 11 11234578999999999988876 89999999973 2 333333221 11234688999999
Q ss_pred EEEEEEC--CCEEEEEecCCc----eeeeeeccccceeEeEecCCCEEEEEEc-CCeEEEEEecC
Q 003445 241 TLLCGLH--ESLKVFSWEPIR----CHDAVDVGWSRLSDLNVHEGKLLGCSYN-QSCVGVWVVDI 298 (819)
Q Consensus 241 ~Lasgs~--d~I~Vwd~~~~~----~~~~~~~~~s~i~~l~~~dg~lLa~~~~-Dg~V~IW~ld~ 298 (819)
+|+++.. +.|.+|+++... ....+..+..+......++|++|+++.. +++|.+|.++.
T Consensus 241 ~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 241 HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 9998854 469999996543 2233333332222233378988887765 89999998864
No 169
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=1.4e-14 Score=152.56 Aligned_cols=283 Identities=17% Similarity=0.257 Sum_probs=206.9
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC--CeEEEEECCCCeE
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS--GTIKLWDLEEAKI 93 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D--G~I~IWDl~s~~~ 93 (819)
...++.+.|.. +...|..|+.|| .++|.................|..+-|+. .+++..+.+ ..++++++..+..
T Consensus 5 ~~ti~~~~~Nq-d~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQ-DSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred Ccceeeeeecc-ceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce
Confidence 34677778886 677888999988 78888766555333222333455555654 455555544 4599999998888
Q ss_pred EEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEec---CCCCeEEEEEcCCCCEEEEEE--CCCeEE
Q 003445 94 VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG---HTRGVNAIRFTPDGRWVVSGG--EDNTVK 168 (819)
Q Consensus 94 i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~---h~~~I~sl~fspdg~~L~sgs--~Dg~I~ 168 (819)
+..+. ....|.+|.++. +.|+++-. ..|+|||+++.+.++++.. +...+.++.+++.+.+++.-+ ..|.|.
T Consensus 81 ICe~~-fpt~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred EEEEe-cCCceEEEEEcc--ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 88776 567899999973 45655544 4499999999999988764 445566777777777888543 468999
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCe-EEEEECCCCeEEEEeCCCC--CCeeEEEEeCCCCEEEEE
Q 003445 169 LWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRT-VKFWDLETFELIGSAGPET--SGVRCLTFNPDGRTLLCG 245 (819)
Q Consensus 169 IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~-I~iwDl~~~~~l~~~~~~~--~~I~sl~fspdg~~Lasg 245 (819)
+||..+-+.+..+..|.+.+.+++|+++|.+||++++.|+ |++|.+.+|+.+..++-.. ..|.+++|+|++++|++.
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 9999999999999999999999999999999999999996 8999999999999986543 357899999999999876
Q ss_pred EC-CCEEEEEecCCcee-------------------------------------eeeeccccc---eeEeE-ecCCCEEE
Q 003445 246 LH-ESLKVFSWEPIRCH-------------------------------------DAVDVGWSR---LSDLN-VHEGKLLG 283 (819)
Q Consensus 246 s~-d~I~Vwd~~~~~~~-------------------------------------~~~~~~~s~---i~~l~-~~dg~lLa 283 (819)
++ ++|+||.++..... .......+. +..+. ......+.
T Consensus 237 S~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~ 316 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVL 316 (391)
T ss_pred cCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEE
Confidence 55 47999988643210 000111111 11111 13567888
Q ss_pred EEEcCCeEEEEEecCCceeeeee
Q 003445 284 CSYNQSCVGVWVVDISRIEPYTI 306 (819)
Q Consensus 284 ~~~~Dg~V~IW~ld~~~~~p~~~ 306 (819)
++..||.++.|.++..+-.....
T Consensus 317 vas~dG~~y~y~l~~~~gGec~l 339 (391)
T KOG2110|consen 317 VASYDGHLYSYRLPPKEGGECAL 339 (391)
T ss_pred EEEcCCeEEEEEcCCCCCceeEE
Confidence 88999999999988865544433
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.72 E-value=7.3e-16 Score=159.28 Aligned_cols=236 Identities=20% Similarity=0.341 Sum_probs=179.9
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCC------------eEEEEEc-CCCCCeEEEEEe-------cCCCEEEEEE
Q 003445 61 GIDSVSFDSSEVLVAAGAASGTIKLWDLEEA------------KIVRTLT-GHRSNCISVDFH-------PFGEFFASGS 120 (819)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~------------~~i~~l~-~h~~~I~sl~fs-------p~g~~Lasgs 120 (819)
......|+|||..|++-+.|..+++|++... +....++ .....|...+|- |+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 4556899999999999999999999998421 0111111 133456777774 5678999999
Q ss_pred CCCcEEEEECCCCeEEEEEec--CCC---CeEEEEEcCCCCEEEEEECCCeEEEEEC-CCCeEEEEE-------ecCCCC
Q 003445 121 LDTNLKIWDIRKKGCIHTYKG--HTR---GVNAIRFTPDGRWVVSGGEDNTVKLWDL-TAGKLLHDF-------KCHEGQ 187 (819)
Q Consensus 121 ~Dg~I~IwDi~t~~~i~~~~~--h~~---~I~sl~fspdg~~L~sgs~Dg~I~IwDl-~t~~~i~~~-------~~h~~~ 187 (819)
.+.-|++||.-+|+....+.+ |.. ...+++|+|||.+|++| ...+|++||+ +.|.....+ .+..+-
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 999999999999988777654 322 35789999999999987 5789999999 666422211 123567
Q ss_pred eEEEEEeCC-CCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC--CCEEEEEecCCce-eee
Q 003445 188 IQCIDFHPH-EFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH--ESLKVFSWEPIRC-HDA 263 (819)
Q Consensus 188 I~sl~fspd-g~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~--d~I~Vwd~~~~~~-~~~ 263 (819)
|.+++|+|. ...++.|+....+-||.-....++..+.+|.+.|+.+.|.++|+.|++|.. +.|..||+...+. +-.
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~ 289 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA 289 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence 899999996 559999999999999999999999999999999999999999999999964 4688999875332 111
Q ss_pred ----ee-ccccceeEeEecCCCEEEEEEcCCeEEEEEecC
Q 003445 264 ----VD-VGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 264 ----~~-~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~ 298 (819)
+. .+.....++ -+.+++|++|..||.|++||++.
T Consensus 290 L~rhv~~TNQRI~FDl-d~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 290 LERHVGDTNQRILFDL-DPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hhhhccCccceEEEec-CCCCceeeccCCCccEEEEecCC
Confidence 11 111112222 27899999999999999999987
No 171
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.71 E-value=1.9e-16 Score=172.22 Aligned_cols=263 Identities=16% Similarity=0.330 Sum_probs=194.0
Q ss_pred ccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEE-EEEc-------CCCCEEEEEECCCeEEE
Q 003445 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDS-VSFD-------SSEVLVAAGAASGTIKL 85 (819)
Q Consensus 14 ~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~-l~fs-------pdg~~Lasgs~DG~I~I 85 (819)
-|...|.|+.|.. +..++.++ +|..+.+|.--.......+.-....|.- +..- .....|+.++.||.+.+
T Consensus 12 r~~e~vc~v~w~~-~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 12 RNSEKVCCVDWSS-NEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred ccceeEEeecccc-cceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 5777888999986 55555555 4555555543222222222111111111 1111 12346778889999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003445 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (819)
Q Consensus 86 WDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg 165 (819)
.+ ..++.-+.+..|.+.+.+-.|+|+|.-|++++.||.|++|. ++|-...++.....+|.|++|.|+.+-++.+ ..+
T Consensus 90 l~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~ 166 (737)
T KOG1524|consen 90 LN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFC-QGG 166 (737)
T ss_pred ec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEe-cCC
Confidence 88 56777788889999999999999999999999999999999 4554444555566789999999988766655 456
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEE
Q 003445 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 245 (819)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasg 245 (819)
.+.|=-+.....+..++.|++-|.++.|++...++++|++|-..++||.. |..+.....|..+|++++|.|+ +.++.+
T Consensus 167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~ 244 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLW 244 (737)
T ss_pred eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeee
Confidence 77777777777778889999999999999999999999999999999975 6778888899999999999999 777888
Q ss_pred ECCCEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEE
Q 003445 246 LHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGV 293 (819)
Q Consensus 246 s~d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~I 293 (819)
+.+.++ ++..+.-.++...|+ .||..++||...|.|-+
T Consensus 245 S~nt~R---~~~p~~GSifnlsWS-------~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 245 SYNTAR---FSSPRVGSIFNLSWS-------ADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeee---ecCCCccceEEEEEc-------CCCceeeccccCceEEE
Confidence 877766 344333344444444 78888888888776543
No 172
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3.6e-16 Score=162.91 Aligned_cols=266 Identities=20% Similarity=0.254 Sum_probs=190.5
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCeEEE--EEcCCC-CCe
Q 003445 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDS--SEVLVAAGAASGTIKLWDLEEAKIVR--TLTGHR-SNC 104 (819)
Q Consensus 30 ~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fsp--dg~~Lasgs~DG~I~IWDl~s~~~i~--~l~~h~-~~I 104 (819)
..+|++..+|.|++||..+++.+..++++...++.+.|.. ....+.+++.||+|++||++...... .+.++. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4689999999999999999999999999999999999976 56789999999999999998765443 344454 456
Q ss_pred EEEEEecCCCEEEEEEC----CCcEEEEECCCCeE-EEE-EecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCe-
Q 003445 105 ISVDFHPFGEFFASGSL----DTNLKIWDIRKKGC-IHT-YKGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGK- 176 (819)
Q Consensus 105 ~sl~fsp~g~~Lasgs~----Dg~I~IwDi~t~~~-i~~-~~~h~~~I~sl~fsp-dg~~L~sgs~Dg~I~IwDl~t~~- 176 (819)
.+++....++.+++|+. +-.|.+||+|..+. +.. ...|...|++++|+| +.+.|++|+.||.|.+||+....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 67777667788888763 67899999998765 444 357999999999999 67899999999999999997542
Q ss_pred ---EEEEEecCCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCCCeEEEEeCCCC------------CCeeEEEEeCCCC
Q 003445 177 ---LLHDFKCHEGQIQCIDFHPHE-FLLATGSADRTVKFWDLETFELIGSAGPET------------SGVRCLTFNPDGR 240 (819)
Q Consensus 177 ---~i~~~~~h~~~I~sl~fspdg-~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~------------~~I~sl~fspdg~ 240 (819)
++..+ .|...|.++.|+.++ +.|.+-+..++..+|+++.+.....+.... ..+-......++.
T Consensus 201 eDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 201 EDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred hhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 23333 367789999999887 457778889999999999887554433220 0111111122334
Q ss_pred EEEEEEC--CCEEEEEec---CCce---eeeeec-cccceeEeEe-cCCCEEEEEEcCCeEEEEEe
Q 003445 241 TLLCGLH--ESLKVFSWE---PIRC---HDAVDV-GWSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 296 (819)
Q Consensus 241 ~Lasgs~--d~I~Vwd~~---~~~~---~~~~~~-~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~l 296 (819)
..+.+.. +...++-+. ++.. ...+.. +...+.++.+ ..+.++.+|++||.+.+|..
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 4443333 334444433 2222 222333 2233344444 45788999999999999986
No 173
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.70 E-value=6.3e-16 Score=157.60 Aligned_cols=238 Identities=21% Similarity=0.387 Sum_probs=184.6
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCC-------CeEEEEECCCC---------ceEEEec-CCCCCeEEEEEcCCCC
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGED-------HKVNLWAIGKP---------NAILSLS-GHTSGIDSVSFDSSEV 72 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~D-------g~V~IWdl~~~---------~~i~~l~-~h~~~V~~l~fspdg~ 72 (819)
..|..|.+.|+.++-+|.+.++|+|+..+ -.+-||.+... +++..+. .+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 35667889999999999999999998653 24789988543 2233333 3456899999999999
Q ss_pred EEEEEECCCeEEEEECCCCeE-EEEEc-----CCCCCeEEEEEec--CCCEEEEEECCCcEEEEECCCCeEEEEEe-cCC
Q 003445 73 LVAAGAASGTIKLWDLEEAKI-VRTLT-----GHRSNCISVDFHP--FGEFFASGSLDTNLKIWDIRKKGCIHTYK-GHT 143 (819)
Q Consensus 73 ~Lasgs~DG~I~IWDl~s~~~-i~~l~-----~h~~~I~sl~fsp--~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~-~h~ 143 (819)
.+++-. |..|.+|+++.+.. +..+. .+....++-+|+| +++.+++. .|+++..||+++..+...+. .|.
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHg 214 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHG 214 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhc
Confidence 888765 88999999987765 33332 3556778889988 67777776 48999999999988776664 688
Q ss_pred CCeEEEEEcCCCC-EEEEEECCCeEEEEECCCC-eEEEEEecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCC---
Q 003445 144 RGVNAIRFTPDGR-WVVSGGEDNTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETF--- 217 (819)
Q Consensus 144 ~~I~sl~fspdg~-~L~sgs~Dg~I~IwDl~t~-~~i~~~~~h~~~I~sl~fspd-g~~Lasgs~Dg~I~iwDl~~~--- 217 (819)
..|..+.|+|+.. +|++|++||.|+|||.+.- .+++++.+|...|+++.|+|. ..+|++|+.|..|.+|....-
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE 294 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE 294 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccc
Confidence 8899999999654 6789999999999999864 578888999999999999995 678999999999999975421
Q ss_pred --------------------------eEEEEeCCCCCCeeEEEEeCCCCEEEEE-ECCC
Q 003445 218 --------------------------ELIGSAGPETSGVRCLTFNPDGRTLLCG-LHES 249 (819)
Q Consensus 218 --------------------------~~l~~~~~~~~~I~sl~fspdg~~Lasg-s~d~ 249 (819)
..+.++..|...|++++|+.-..+++++ +.|+
T Consensus 295 ~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG 353 (370)
T KOG1007|consen 295 QQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG 353 (370)
T ss_pred cccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc
Confidence 1234566677888999998877777655 4443
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.70 E-value=6.3e-16 Score=159.77 Aligned_cols=238 Identities=22% Similarity=0.369 Sum_probs=189.7
Q ss_pred CCCEEEEEEee------CCCcEEEEEeCCCeEEEEECCCCceEEEecC--CCC---CeEEEEEcCCCCEEEEEECCCeEE
Q 003445 16 SSTVNCLKIGR------KSSRVLVTGGEDHKVNLWAIGKPNAILSLSG--HTS---GIDSVSFDSSEVLVAAGAASGTIK 84 (819)
Q Consensus 16 ~~~V~~lafsp------~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~--h~~---~V~~l~fspdg~~Lasgs~DG~I~ 84 (819)
...|...+|.+ .+..++++.+.+.-|++||.-+++....+.+ |.. .-.+++|+|||.+|++| ....|+
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcir 182 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIR 182 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEE
Confidence 45678888763 1556888999999999999999988877764 333 45689999999999885 578999
Q ss_pred EEEC-CCCeEE--EEE-----cCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCC
Q 003445 85 LWDL-EEAKIV--RTL-----TGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDG 155 (819)
Q Consensus 85 IWDl-~s~~~i--~~l-----~~h~~~I~sl~fsp~g~-~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg 155 (819)
+||+ +.|.-. ... .+..+-|.+++|+|... .++.|+....+-||.-..+.++..+.+|.+.|+.++|.++|
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc
Confidence 9999 444321 111 23467789999999665 89999999999999988999999999999999999999999
Q ss_pred CEEEEEEC-CCeEEEEECCCC-eEEEEEecCCC-CeE--EEEEeCCCCEEEEEECCCeEEEEECCC-CeEEEEeCCCCCC
Q 003445 156 RWVVSGGE-DNTVKLWDLTAG-KLLHDFKCHEG-QIQ--CIDFHPHEFLLATGSADRTVKFWDLET-FELIGSAGPETSG 229 (819)
Q Consensus 156 ~~L~sgs~-Dg~I~IwDl~t~-~~i~~~~~h~~-~I~--sl~fspdg~~Lasgs~Dg~I~iwDl~~-~~~l~~~~~~~~~ 229 (819)
+.|++|.. |..|.+||++.. .++..+..|.+ .-. -....|++.+|++|+.||.|++||+++ +..+..+..+...
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~ 342 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDT 342 (406)
T ss_pred CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccc
Confidence 99999875 678999999864 45555555544 222 344567899999999999999999998 7778888899999
Q ss_pred eeEEEEeCCCCEEEEEECCCEEEEEec
Q 003445 230 VRCLTFNPDGRTLLCGLHESLKVFSWE 256 (819)
Q Consensus 230 I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (819)
++.++++|--.++++++.. ++|-..
T Consensus 343 vNgvslnP~mpilatssGq--r~f~~~ 367 (406)
T KOG2919|consen 343 VNGVSLNPIMPILATSSGQ--RIFKYP 367 (406)
T ss_pred ccceecCcccceeeeccCc--eeecCC
Confidence 9999999998888877655 455443
No 175
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.70 E-value=1.8e-17 Score=187.69 Aligned_cols=283 Identities=20% Similarity=0.335 Sum_probs=221.9
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (819)
+..+..+.+|.+.|+|+.|.. .++++++|++|..++||..++..++....||.+.|+.++.+.+..++++++.|..|++
T Consensus 180 mk~ikrLlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHHhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 334557889999999999998 8899999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE----e-cCCCCeEEEEEcCCCCEEEE
Q 003445 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY----K-GHTRGVNAIRFTPDGRWVVS 160 (819)
Q Consensus 86 WDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~----~-~h~~~I~sl~fspdg~~L~s 160 (819)
|.+.++.++..+.+|.+.|++++|+|.. +.+.||++++||.+ ...+... + ....-+.++.|...+..+++
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeecccccccccc
Confidence 9999999999999999999999999955 77889999999988 2221111 0 12345677888888888999
Q ss_pred EECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCC
Q 003445 161 GGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG 239 (819)
Q Consensus 161 gs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspd-g~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg 239 (819)
|+.|+.-..|.+..-. .+...+.-+.++.+ ..+.+++-.+..+++|++.+|.+++...+|...+..+.++|-+
T Consensus 334 gs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn 407 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN 407 (1113)
T ss_pred ccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCC
Confidence 9999988877654211 11111111111112 2456666678889999999999999999999999999999987
Q ss_pred CEEE--EEECCCEEEEEecCCceeeeeeccccceeEe-EecCCCEEEEEEcCCeEEEEEecCCc
Q 003445 240 RTLL--CGLHESLKVFSWEPIRCHDAVDVGWSRLSDL-NVHEGKLLGCSYNQSCVGVWVVDISR 300 (819)
Q Consensus 240 ~~La--sgs~d~I~Vwd~~~~~~~~~~~~~~s~i~~l-~~~dg~lLa~~~~Dg~V~IW~ld~~~ 300 (819)
..++ .|-++...|||.-.+...+.+..+...+.+- +..+|..+++...-|.++|....-++
T Consensus 408 ~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 408 PRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred cHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 7766 4556679999987777766665554444443 44788888888888888887554433
No 176
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=9e-16 Score=169.08 Aligned_cols=241 Identities=21% Similarity=0.373 Sum_probs=192.7
Q ss_pred eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCE--EEEEECCCcEEEE
Q 003445 51 AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEF--FASGSLDTNLKIW 128 (819)
Q Consensus 51 ~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~--Lasgs~Dg~I~Iw 128 (819)
+...+.||++.|.+|...|.|..|++|+.||+|+||.+.+|.+++++. ..+.|.||+|+|.+.. ||++- +..+.|.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEEe
Confidence 345677999999999999999999999999999999999999999987 6678999999998763 44433 3334444
Q ss_pred ECCCC-------------------------------------eEEEEEecCCCCeEEEEEcCCCCEEEEEECC---CeEE
Q 003445 129 DIRKK-------------------------------------GCIHTYKGHTRGVNAIRFTPDGRWVVSGGED---NTVK 168 (819)
Q Consensus 129 Di~t~-------------------------------------~~i~~~~~h~~~I~sl~fspdg~~L~sgs~D---g~I~ 168 (819)
+..-| .-+...-.|...|..+.|+..|.||++..-+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 32111 0112223477889999999999999987764 4699
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC
Q 003445 169 LWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (819)
Q Consensus 169 IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (819)
|+++...+...-|.-..+.|.++.|||...+|++++. ..|+|||+....++..+......|..++.+|.|..|++|+.+
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence 9999887777777667788999999999988888874 679999999888888888888889999999999999988877
Q ss_pred -CEEEEEecC-CceeeeeeccccceeEeEecCC-CEEEEEEcCCeEEEE
Q 003445 249 -SLKVFSWEP-IRCHDAVDVGWSRLSDLNVHEG-KLLGCSYNQSCVGVW 294 (819)
Q Consensus 249 -~I~Vwd~~~-~~~~~~~~~~~s~i~~l~~~dg-~lLa~~~~Dg~V~IW 294 (819)
.+..||++- .+..+.+..+...+..+.+|.. .++++|+.||.+.|+
T Consensus 629 ~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 577788875 3556666677777777777765 678888899999998
No 177
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=9.4e-15 Score=145.97 Aligned_cols=268 Identities=17% Similarity=0.205 Sum_probs=188.0
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC---------C-ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK---------P-NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~---------~-~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
..|..-+|+| .+++|++|..+|.|.+..+.+ + ..+....+|.++|+.++|. ..+|++|+ ||.|+-|
T Consensus 11 ~tvf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 11 NTVFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGW 86 (325)
T ss_pred HHHHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEe
Confidence 3566778999 788999999999999998732 2 3344557999999999998 44666765 6999999
Q ss_pred ECCCCeE------EEEE--cCC-----CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC
Q 003445 87 DLEEAKI------VRTL--TGH-----RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP 153 (819)
Q Consensus 87 Dl~s~~~------i~~l--~~h-----~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fsp 153 (819)
.+..... +... ..| -..|.++...|..+-++.++.|+.++-||+++|+...++++|++.|.++.--.
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 8753221 1111 112 23688999999888888888999999999999999999999999999999855
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEecC---------C-CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 003445 154 DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH---------E-GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA 223 (819)
Q Consensus 154 dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h---------~-~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~ 223 (819)
....+++|++||++++||+++++.+..+... . ..|.+++ -++.+|++|+ ...+.+|.++..++...+
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-Gp~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-GPKLSLWHLRSSESTCVF 243 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-CCceeEEeccCCCceEEE
Confidence 5567999999999999999999988876532 1 2244544 4566998886 457999999998877766
Q ss_pred CCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeeeeeccccceeEeEe--cCCCEEEEEEcCCeEEEE
Q 003445 224 GPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNV--HEGKLLGCSYNQSCVGVW 294 (819)
Q Consensus 224 ~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~--~dg~lLa~~~~Dg~V~IW 294 (819)
.. ...+..+.|..| ..|+.|-.+.+.-|.+... ....+...........+ ..-+++..++..+.+.|+
T Consensus 244 pi-pa~v~~v~F~~d-~vl~~G~g~~v~~~~l~Gv-l~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 244 PI-PARVHLVDFVDD-CVLIGGEGNHVQSYTLNGV-LQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ec-ccceeEeeeecc-eEEEeccccceeeeeeccE-EEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 43 356788888744 3444443445777766432 11112222211112221 223556666666666665
No 178
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=5.8e-15 Score=147.48 Aligned_cols=231 Identities=16% Similarity=0.260 Sum_probs=178.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCC----------CeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 003445 61 GIDSVSFDSSEVLVAAGAASGTIKLWDLEE----------AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDI 130 (819)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~DG~I~IWDl~s----------~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi 130 (819)
.|..-+|+|.+++|++|..+|.|.++.+.+ ...+..+++|.+++..++|+ ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 355668899999999999999999999853 23455668999999999998 56677776 599999987
Q ss_pred CCCeE------EEEEe--cC-----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCC
Q 003445 131 RKKGC------IHTYK--GH-----TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHE 197 (819)
Q Consensus 131 ~t~~~------i~~~~--~h-----~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg 197 (819)
+.... +...+ -| --.|+++...|..+-++.++.|+.++.||+.+|+...++++|..-|.++.--...
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 64321 11111 11 2358899999988878888899999999999999999999999999999875555
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEeCCC----------CCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeeeeecc
Q 003445 198 FLLATGSADRTVKFWDLETFELIGSAGPE----------TSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVG 267 (819)
Q Consensus 198 ~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~----------~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~ 267 (819)
..+++|++||++++||.++++.+..+... ..+|-+++. +..+|++|..-.+.+|.+...++..+++..
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t~vfpip 246 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSESTCVFPIP 246 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCceEEEecc
Confidence 67899999999999999999988876432 234555655 556999998888999999999998888765
Q ss_pred ccceeEeEecCCCEEEEEEcCCeEEEEEecC
Q 003445 268 WSRLSDLNVHEGKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 268 ~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~ 298 (819)
.. +..+.+.+ +.+..++..++|.-|.+..
T Consensus 247 a~-v~~v~F~~-d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 247 AR-VHLVDFVD-DCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred cc-eeEeeeec-ceEEEeccccceeeeeecc
Confidence 43 33444444 4455566667888887664
No 179
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.69 E-value=2.2e-15 Score=160.10 Aligned_cols=248 Identities=20% Similarity=0.392 Sum_probs=185.6
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC--------C--------CceEEEecCCCCCeEEEEEcCCC
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG--------K--------PNAILSLSGHTSGIDSVSFDSSE 71 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~--------~--------~~~i~~l~~h~~~V~~l~fspdg 71 (819)
-+..+..|...|+++.|+| .+.+|++|+++|.|.+|... + -...+.+.+|...|..++|++++
T Consensus 57 y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~ 135 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS 135 (434)
T ss_pred EeecccCCcceeEEEEEcC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC
Confidence 3456778999999999999 77899999999999999765 2 12345667899999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe--------c--
Q 003445 72 VLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK--------G-- 141 (819)
Q Consensus 72 ~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~--------~-- 141 (819)
.++++++.|..+++||+..|+....+..|...+..++|.|-++++++-+.|...+.+.+...+.++... .
T Consensus 136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~ 215 (434)
T KOG1009|consen 136 NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE 215 (434)
T ss_pred ceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC
Confidence 999999999999999999999999999999999999999999999999999877777765544332221 0
Q ss_pred ---------C----CCCeEEEEEcCCCCEEEEEEC----CCe-----EEEEECCC-CeEEEEEecCCCCeEEEEEeC---
Q 003445 142 ---------H----TRGVNAIRFTPDGRWVVSGGE----DNT-----VKLWDLTA-GKLLHDFKCHEGQIQCIDFHP--- 195 (819)
Q Consensus 142 ---------h----~~~I~sl~fspdg~~L~sgs~----Dg~-----I~IwDl~t-~~~i~~~~~h~~~I~sl~fsp--- 195 (819)
| ......++|+|+|..|++... ++. .++|+-.. .+++..+.+...+...+.|+|
T Consensus 216 ~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~ 295 (434)
T KOG1009|consen 216 REGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYY 295 (434)
T ss_pred CCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEE
Confidence 1 123557889999999887532 222 34444321 233444444444555555544
Q ss_pred ---------------CCCEEEEEECCCeEEEEECCCCeEEEEe-CCCCCCeeEEEEeCCCCEEEEEECCC-EEEEEecC
Q 003445 196 ---------------HEFLLATGSADRTVKFWDLETFELIGSA-GPETSGVRCLTFNPDGRTLLCGLHES-LKVFSWEP 257 (819)
Q Consensus 196 ---------------dg~~Lasgs~Dg~I~iwDl~~~~~l~~~-~~~~~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~~ 257 (819)
-+-.+|.++ ...|++||.++..++... ..|-..|+.++|++||.+|+.++.|+ ..+.-+++
T Consensus 296 elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 296 ELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred EeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcc
Confidence 233556665 457999999998877664 45678899999999999999888775 34444443
No 180
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.68 E-value=1.4e-15 Score=160.74 Aligned_cols=205 Identities=21% Similarity=0.407 Sum_probs=168.2
Q ss_pred EecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC-------eEEEEEcCCCCCeEEEEEecCC-CEEEEEECCCc
Q 003445 54 SLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEEA-------KIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTN 124 (819)
Q Consensus 54 ~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~s~-------~~i~~l~~h~~~I~sl~fsp~g-~~Lasgs~Dg~ 124 (819)
.+.||+++|..++|+| +...||+|+.|.+|.||.+..+ +++..+.+|...|-.++|||.. +.|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3568999999999999 5678999999999999998654 4577889999999999999965 57889999999
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCC-eEEEEEeCCCCEEEEE
Q 003445 125 LKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ-IQCIDFHPHEFLLATG 203 (819)
Q Consensus 125 I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~-I~sl~fspdg~~Lasg 203 (819)
|.+|++.+++.+.++. |...|+++.|+.||.+|++++.|..|+|||.++++.+.+-.+|.+. -..+.|-.+|.++-+|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999999988 9999999999999999999999999999999999999998888763 4566788888855555
Q ss_pred E---CCCeEEEEECCCCeE---EEEeCCCCCCeeEEEEeCCCCEEEEEEC-C-CEEEEEecCCce
Q 003445 204 S---ADRTVKFWDLETFEL---IGSAGPETSGVRCLTFNPDGRTLLCGLH-E-SLKVFSWEPIRC 260 (819)
Q Consensus 204 s---~Dg~I~iwDl~~~~~---l~~~~~~~~~I~sl~fspdg~~Lasgs~-d-~I~Vwd~~~~~~ 260 (819)
. .+..+-+||..+.+. +..+.. ..+|.-=-|.+|.+.++.++. | .|+-|.+.....
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred cccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 3 467899999877543 233333 344555567888888875433 3 599998876553
No 181
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.68 E-value=1.2e-15 Score=169.06 Aligned_cols=244 Identities=18% Similarity=0.345 Sum_probs=191.6
Q ss_pred cccceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003445 4 KRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTI 83 (819)
Q Consensus 4 kr~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I 83 (819)
.....++.+++|++.|+|++|+. +|..+++|+.|..|.+|+.. -+-+..+ .|++.|.|+.|+|-...|++++-+ ..
T Consensus 41 ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~k-lEG~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dF 116 (1081)
T KOG1538|consen 41 SDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSK-LEGILKY-SHNDAIQCMSFNPITHQLASCSLS-DF 116 (1081)
T ss_pred CCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEeccc-ccceeee-ccCCeeeEeecCchHHHhhhcchh-hc
Confidence 45667899999999999999998 77789999999999999853 2222223 499999999999999999987654 46
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE---ecCCCCeEEEEEcCCC-----
Q 003445 84 KLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY---KGHTRGVNAIRFTPDG----- 155 (819)
Q Consensus 84 ~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~---~~h~~~I~sl~fspdg----- 155 (819)
-+|..+..... ..+ ....|.+++|..||++|+.|-.+|+|.|-+-. ++....+ .+.+.+|++++|+|..
T Consensus 117 glWS~~qK~V~-K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~ 193 (1081)
T KOG1538|consen 117 GLWSPEQKSVS-KHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRN 193 (1081)
T ss_pred cccChhhhhHH-hhh-hheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCcc
Confidence 78876544322 222 34568899999999999999999999998754 3333333 3467899999999942
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEE
Q 003445 156 RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTF 235 (819)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~f 235 (819)
..++......++.+|.+. |+.+..-+.-.-...|+.+.++|.+++.|+.|+.+++|- +.|-.+.+......+|+.++.
T Consensus 194 di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~ 271 (1081)
T KOG1538|consen 194 DILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQA 271 (1081)
T ss_pred ceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEE
Confidence 467777888888888875 555543333344567899999999999999999999995 567788888888899999999
Q ss_pred eCCCCEEEEEECC-CEEEEEec
Q 003445 236 NPDGRTLLCGLHE-SLKVFSWE 256 (819)
Q Consensus 236 spdg~~Lasgs~d-~I~Vwd~~ 256 (819)
.|++++++.|+.| +|--|++-
T Consensus 272 ~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 272 KPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccCCceEEEEEccCeeehhhhH
Confidence 9999999999877 47777764
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.68 E-value=3.1e-15 Score=171.95 Aligned_cols=243 Identities=19% Similarity=0.264 Sum_probs=186.4
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce--EEE----ecCCCCCeEEEEEcCCCC--EEEEEECCCeEEEE
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA--ILS----LSGHTSGIDSVSFDSSEV--LVAAGAASGTIKLW 86 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~--i~~----l~~h~~~V~~l~fspdg~--~Lasgs~DG~I~IW 86 (819)
-...|.|++|+|.+..+++.|..+|.|.+||+..+.. ... ...|..++..+.|..+.. -|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 3578999999999999999999999999999976654 222 235889999999966544 48899999999999
Q ss_pred ECCCCeE------EEEEc------CCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCC---e-----EEEEEecCCCC
Q 003445 87 DLEEAKI------VRTLT------GHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKK---G-----CIHTYKGHTRG 145 (819)
Q Consensus 87 Dl~s~~~------i~~l~------~h~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~t~---~-----~i~~~~~h~~~ 145 (819)
+++.-.. ..... .....++++.|.+.. ..|++|+.+|.|+--+-... . ....+..|.++
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 8864322 11111 122367899998854 46999999999987443221 1 23355678899
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEEEEEecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCC--CeEEE
Q 003445 146 VNAIRFTPDGRWVVSGGEDNTVKLWDLT-AGKLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLET--FELIG 221 (819)
Q Consensus 146 I~sl~fspdg~~L~sgs~Dg~I~IwDl~-t~~~i~~~~~h~~~I~sl~fspd-g~~Lasgs~Dg~I~iwDl~~--~~~l~ 221 (819)
|+++.++|-+..++..+.|.+++||... ...++..+..+...|++++|+|. -..++++..||.|.+||+.. ..++.
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence 9999999977666555559999999988 67778888878888999999997 46888888899999999964 34455
Q ss_pred EeCCCCCCeeEEEEeCCCCEEEEEECCC-EEEEEecC
Q 003445 222 SAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFSWEP 257 (819)
Q Consensus 222 ~~~~~~~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~~ 257 (819)
....+....+.+.|++.|+.|++|..++ +.+|++..
T Consensus 481 s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 481 SQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 5555566678889999999999998764 89998853
No 183
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.68 E-value=1.4e-14 Score=166.62 Aligned_cols=263 Identities=19% Similarity=0.249 Sum_probs=192.3
Q ss_pred CeEEEEECCCC-ceEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeE--EE----EEcCCCCCeEEEEEe
Q 003445 39 HKVNLWAIGKP-NAILSLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEEAKI--VR----TLTGHRSNCISVDFH 110 (819)
Q Consensus 39 g~V~IWdl~~~-~~i~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~s~~~--i~----~l~~h~~~I~sl~fs 110 (819)
+.+.||++... .....+. -...|.|++|+| +..+++.|+.+|+|.+||+..+.. .. ....|..+|..+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999776 3333443 567899999999 567888999999999999987654 22 223588999999997
Q ss_pred cCCC--EEEEEECCCcEEEEECCCCeE------EEEEe------cCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECC--
Q 003445 111 PFGE--FFASGSLDTNLKIWDIRKKGC------IHTYK------GHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLT-- 173 (819)
Q Consensus 111 p~g~--~Lasgs~Dg~I~IwDi~t~~~------i~~~~------~h~~~I~sl~fsp-dg~~L~sgs~Dg~I~IwDl~-- 173 (819)
.+.. -|++++.||.|..|+++.-.. ..... .....++++.|.+ +-..++.|+++|.|.--+..
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 6544 499999999999998874322 11111 1234688999988 56789999999998874332
Q ss_pred -CCe-----EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECC-CCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003445 174 -AGK-----LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE-TFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (819)
Q Consensus 174 -t~~-----~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~-~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs 246 (819)
.+. ....+..|.++|+++.++|-+..++..+.|.+++||... ...++..+..+...+++++|||....+++..
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~ 460 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV 460 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence 222 233556789999999999987666665569999999988 6777777877778899999999877666554
Q ss_pred C--CCEEEEEecCCceee--eeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCCcee
Q 003445 247 H--ESLKVFSWEPIRCHD--AVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIE 302 (819)
Q Consensus 247 ~--d~I~Vwd~~~~~~~~--~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~~~ 302 (819)
+ +.+.+||+....... ...........+.+ ++|++|++|...|.+.+|++...-..
T Consensus 461 d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l~~ 521 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESLAV 521 (555)
T ss_pred cCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCchhhc
Confidence 4 359999987544332 22333333444444 56999999999999999999754444
No 184
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.67 E-value=1.2e-15 Score=153.95 Aligned_cols=244 Identities=15% Similarity=0.297 Sum_probs=188.1
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS-GHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~-~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
...+.+|.+.|+|+.|.. ++ +|.+|..-|.|++|++.+......+. .|...|+.+..-|++ .+.+-+.|+.+.+|+
T Consensus 7 ~fvLRp~~~~v~s~~fqa-~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQA-NE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-SLDTQGRDPLLILWT 83 (323)
T ss_pred eeEeccccchheehhhcc-ch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc-chhhcCCCceEEEEE
Confidence 345669999999999986 44 49999999999999999988888888 567789999988874 566888999999999
Q ss_pred CCCCeEEEE-------------------------Ec----------------------------CCCCCeEEEEEec-CC
Q 003445 88 LEEAKIVRT-------------------------LT----------------------------GHRSNCISVDFHP-FG 113 (819)
Q Consensus 88 l~s~~~i~~-------------------------l~----------------------------~h~~~I~sl~fsp-~g 113 (819)
+..+..+.. +. +..+.+++..|.. .+
T Consensus 84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence 864211110 00 0112334444322 22
Q ss_pred C--EEEEEECCCcEEEEECCCCe----------EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--eE--
Q 003445 114 E--FFASGSLDTNLKIWDIRKKG----------CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG--KL-- 177 (819)
Q Consensus 114 ~--~Lasgs~Dg~I~IwDi~t~~----------~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~--~~-- 177 (819)
. ++++|-.+|.+.+||+.++. .+..+..|..+|.++.|.+.-..=++|+.+..+..|.+.-. .+
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~ 243 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI 243 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence 2 46778889999999999873 33344578999999999886555677888888899987633 21
Q ss_pred EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEe
Q 003445 178 LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (819)
Q Consensus 178 i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (819)
-.+.......|..+..-||++.+|+++.|+.|++|..++.+++..+..|...|.+++|+|+..+++.++.| .|.+|++
T Consensus 244 ~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 244 RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 12223335568889999999999999999999999999999999999999999999999999999988877 5999975
No 185
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.6e-14 Score=166.24 Aligned_cols=287 Identities=17% Similarity=0.274 Sum_probs=194.2
Q ss_pred ccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC----CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK----PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (819)
Q Consensus 14 ~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~----~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (819)
.|...++|.+++| .++++|+|..||.|.+|.--. ......+.-|...|.++.|+++|.+|++||..|.+.+|.++
T Consensus 203 ~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 4677799999999 889999999999999996321 22344566789999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEec-----------CCCCeEEEEEcCCCCEE
Q 003445 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG-----------HTRGVNAIRFTPDGRWV 158 (819)
Q Consensus 90 s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~-----------h~~~I~sl~fspdg~~L 158 (819)
+++ .+-+..-.++|..+.++||+.+.+....|..|.+....+.....++.+ ..+-.+.++++|.-+.+
T Consensus 282 T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~ 360 (792)
T KOG1963|consen 282 TGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL 360 (792)
T ss_pred CCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence 998 455666788999999999999999999999999987644332222211 12223444555543444
Q ss_pred EEEECCCeEEEEECCCCeEEE-----------------------------------------------------------
Q 003445 159 VSGGEDNTVKLWDLTAGKLLH----------------------------------------------------------- 179 (819)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~i~----------------------------------------------------------- 179 (819)
+..+..|.|.+||+.+...+.
T Consensus 361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~ 440 (792)
T KOG1963|consen 361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN 440 (792)
T ss_pred eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence 444444555555443221111
Q ss_pred --------EE-ecCCCCeEEEEEeC-CC-CEEEEEECCCeEEEEECCC----------CeEEEEeCCCCCCeeEEEEeCC
Q 003445 180 --------DF-KCHEGQIQCIDFHP-HE-FLLATGSADRTVKFWDLET----------FELIGSAGPETSGVRCLTFNPD 238 (819)
Q Consensus 180 --------~~-~~h~~~I~sl~fsp-dg-~~Lasgs~Dg~I~iwDl~~----------~~~l~~~~~~~~~I~sl~fspd 238 (819)
.+ ..|...+...++.+ .. ...++++.||.++||-+.. +.+...-.-|..++..++|+.|
T Consensus 441 ~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d 520 (792)
T KOG1963|consen 441 SKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD 520 (792)
T ss_pred cceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC
Confidence 11 13444443444433 22 2788899999999998843 2333333347788999999999
Q ss_pred CCEEEEEECCCEEEEEecC-CceeeeeeccccceeEeEe---cCCCEEEEEEcCCeEEEEEecCCcee
Q 003445 239 GRTLLCGLHESLKVFSWEP-IRCHDAVDVGWSRLSDLNV---HEGKLLGCSYNQSCVGVWVVDISRIE 302 (819)
Q Consensus 239 g~~Lasgs~d~I~Vwd~~~-~~~~~~~~~~~s~i~~l~~---~dg~lLa~~~~Dg~V~IW~ld~~~~~ 302 (819)
|..|+++.++.|.+||+.+ ...........-++..+.. ......+.......+.+|++-...+.
T Consensus 521 Gslla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~ 588 (792)
T KOG1963|consen 521 GSLLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLI 588 (792)
T ss_pred CcEEEEecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHhhhhhhee
Confidence 9999999999999999988 3333222211111111111 11233345566778999988877665
No 186
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.8e-14 Score=167.21 Aligned_cols=284 Identities=16% Similarity=0.285 Sum_probs=207.5
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCC---CCCeEEEEEcC--CCCEEEEEECCCeEEEEECC--
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGH---TSGIDSVSFDS--SEVLVAAGAASGTIKLWDLE-- 89 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h---~~~V~~l~fsp--dg~~Lasgs~DG~I~IWDl~-- 89 (819)
..-..+.|+| -...++++++.-.|.|||.+.++.+..|..+ ...|+.+.+-. |..++++|+.||.|+||+--
T Consensus 1065 ~~pk~~~~hp-f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1065 QPPKTLKFHP-FEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCceeeecC-CCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 3456678888 5667888888889999999999998877754 35788898854 55689999999999999742
Q ss_pred ---CCeEEEEEcC-------CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEec-CCCCeEEEEEcC-CCCE
Q 003445 90 ---EAKIVRTLTG-------HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG-HTRGVNAIRFTP-DGRW 157 (819)
Q Consensus 90 ---s~~~i~~l~~-------h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~-h~~~I~sl~fsp-dg~~ 157 (819)
..+.+..+.+ ..+.-.-++|.....+|++++.-..|+|||.....++..+.. ....|+++.-+. .|+.
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNI 1223 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCce
Confidence 2234443332 112224567877777777777789999999998887776653 334466665443 5799
Q ss_pred EEEEECCCeEEEEECCCCe---EEEEEecCCCC--eEEEEEeCCCCE-EEEEECCCeEEEEECCCCeE--EEEeCCC---
Q 003445 158 VVSGGEDNTVKLWDLTAGK---LLHDFKCHEGQ--IQCIDFHPHEFL-LATGSADRTVKFWDLETFEL--IGSAGPE--- 226 (819)
Q Consensus 158 L~sgs~Dg~I~IwDl~t~~---~i~~~~~h~~~--I~sl~fspdg~~-Lasgs~Dg~I~iwDl~~~~~--l~~~~~~--- 226 (819)
+++|..||.|++||.+... .+...+.|... |..+.+.++|.- |++|+.||.|++||++.... ...+..|
T Consensus 1224 i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1224 IAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY 1303 (1387)
T ss_pred EEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecccc
Confidence 9999999999999998643 46667778777 999999997765 99999999999999997321 1122222
Q ss_pred CCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeee-----e-eccccceeEeEecCC-CEEEEEEcCCeEEEEEecCC
Q 003445 227 TSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDA-----V-DVGWSRLSDLNVHEG-KLLGCSYNQSCVGVWVVDIS 299 (819)
Q Consensus 227 ~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~-----~-~~~~s~i~~l~~~dg-~lLa~~~~Dg~V~IW~ld~~ 299 (819)
++.++++..+++...+|+|+...|+||+......... + ...-....++.+|.- -++++|+.|..|.||..+..
T Consensus 1304 Gs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred CccceeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 2358999999999999999988899999875432211 1 111223466777765 46678999999999987665
Q ss_pred ce
Q 003445 300 RI 301 (819)
Q Consensus 300 ~~ 301 (819)
++
T Consensus 1384 ~~ 1385 (1387)
T KOG1517|consen 1384 RL 1385 (1387)
T ss_pred CC
Confidence 43
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.65 E-value=1e-13 Score=152.86 Aligned_cols=244 Identities=13% Similarity=0.217 Sum_probs=166.5
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEE-EeCCCeEEEEECCC-Cce--EEEecCCCCCeEEEEEcCCCCEEEEEEC-CCeE
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVT-GGEDHKVNLWAIGK-PNA--ILSLSGHTSGIDSVSFDSSEVLVAAGAA-SGTI 83 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Lat-gs~Dg~V~IWdl~~-~~~--i~~l~~h~~~V~~l~fspdg~~Lasgs~-DG~I 83 (819)
++.+. +.+....++++|+ +++|++ +..++.|.+|++.. +.. ..... .......++|+|++++|++++. ++.|
T Consensus 28 ~~~~~-~~~~~~~l~~spd-~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v 104 (330)
T PRK11028 28 LQVVD-VPGQVQPMVISPD-KRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCV 104 (330)
T ss_pred eeEEe-cCCCCccEEECCC-CCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeE
Confidence 34443 4567888999994 455554 45688999999863 332 22222 3345678999999998888764 8999
Q ss_pred EEEECCC-C---eEEEEEcCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCeEEEE-----Ee-cCCCCeEEEEEc
Q 003445 84 KLWDLEE-A---KIVRTLTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRKKGCIHT-----YK-GHTRGVNAIRFT 152 (819)
Q Consensus 84 ~IWDl~s-~---~~i~~l~~h~~~I~sl~fsp~g~~Lasgs-~Dg~I~IwDi~t~~~i~~-----~~-~h~~~I~sl~fs 152 (819)
.+|++.+ + +.+..+. +......++++|+++++++++ .++.|.+||+.+...+.. .. ........+.|+
T Consensus 105 ~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~ 183 (330)
T PRK11028 105 SVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFH 183 (330)
T ss_pred EEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEEC
Confidence 9999974 2 2333333 233467788999999886555 569999999986433211 11 112346789999
Q ss_pred CCCCEEEEEEC-CCeEEEEECCC--C--eEEEEEecCC------CCeEEEEEeCCCCEEEEEEC-CCeEEEEECCCCe--
Q 003445 153 PDGRWVVSGGE-DNTVKLWDLTA--G--KLLHDFKCHE------GQIQCIDFHPHEFLLATGSA-DRTVKFWDLETFE-- 218 (819)
Q Consensus 153 pdg~~L~sgs~-Dg~I~IwDl~t--~--~~i~~~~~h~------~~I~sl~fspdg~~Lasgs~-Dg~I~iwDl~~~~-- 218 (819)
|+|++++++.. ++.|.+||+.. + +.+..+..+. .....+.|+|++++|+++.. ++.|.+|++....
T Consensus 184 pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~ 263 (330)
T PRK11028 184 PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV 263 (330)
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe
Confidence 99999988876 89999999973 3 2333333211 12336889999999999864 7899999985432
Q ss_pred --EEEEeCCCCCCeeEEEEeCCCCEEEEEEC--CCEEEEEecC
Q 003445 219 --LIGSAGPETSGVRCLTFNPDGRTLLCGLH--ESLKVFSWEP 257 (819)
Q Consensus 219 --~l~~~~~~~~~I~sl~fspdg~~Lasgs~--d~I~Vwd~~~ 257 (819)
.+..... ......+.|+|+|++|+++.. +.|.+|.++.
T Consensus 264 ~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 264 LSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 2333322 234578999999999998764 4699998864
No 188
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.64 E-value=1e-14 Score=149.07 Aligned_cols=236 Identities=19% Similarity=0.318 Sum_probs=180.3
Q ss_pred ccCCCEEEEEEeeCCC----cEEEEEeCCCeEEEEECCC--CceE--EEe-----cCCCCCeEEEEEcC-CCCEEEEEEC
Q 003445 14 AHSSTVNCLKIGRKSS----RVLVTGGEDHKVNLWAIGK--PNAI--LSL-----SGHTSGIDSVSFDS-SEVLVAAGAA 79 (819)
Q Consensus 14 ~H~~~V~~lafsp~~~----~~Latgs~Dg~V~IWdl~~--~~~i--~~l-----~~h~~~V~~l~fsp-dg~~Lasgs~ 79 (819)
.|.-+++.+-|.|+.. .+|||++ ..+++|.+.. .+.. ..+ ..+..++++..|+. +-++|.+.+-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 5788999999999542 4566665 4699999863 2211 111 23667999999987 6689999999
Q ss_pred CCeEEEEECCCCe---EEEEEcCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeEEEEE-e--cCCCCeEEEEEc
Q 003445 80 SGTIKLWDLEEAK---IVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTY-K--GHTRGVNAIRFT 152 (819)
Q Consensus 80 DG~I~IWDl~s~~---~i~~l~~h~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~t~~~i~~~-~--~h~~~I~sl~fs 152 (819)
|.+..|||++++. ....+-.|...|..++|...+ +.||+.+.||.+++||++..+.-..+ . ....+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 9999999999863 355677899999999999855 47999999999999999987643332 2 224568889998
Q ss_pred C-CCCEEEEEECC-CeEEEEECCCC-eEEEEEecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCCeE------EEE
Q 003445 153 P-DGRWVVSGGED-NTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFEL------IGS 222 (819)
Q Consensus 153 p-dg~~L~sgs~D-g~I~IwDl~t~-~~i~~~~~h~~~I~sl~fspd-g~~Lasgs~Dg~I~iwDl~~~~~------l~~ 222 (819)
+ |-+++++-..| ..|.|.|++.. ..+..+.+|.+.|+.++|.|. ...|++++.|..+.+||+...-. +..
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 7 55677765555 56999999964 578889999999999999997 67999999999999999975321 222
Q ss_pred eCCCCCCeeEEEEeC-CCCEEEEEECCCEEE
Q 003445 223 AGPETSGVRCLTFNP-DGRTLLCGLHESLKV 252 (819)
Q Consensus 223 ~~~~~~~I~sl~fsp-dg~~Lasgs~d~I~V 252 (819)
+. ..+.|..+.|++ .+..++++..+.+.+
T Consensus 332 y~-a~~EVNqi~Ws~~~~Dwiai~~~kklei 361 (364)
T KOG0290|consen 332 YT-AGGEVNQIQWSSSQPDWIAICFGKKLEI 361 (364)
T ss_pred hh-ccceeeeeeecccCCCEEEEEecCeeeE
Confidence 22 467799999995 577888887776544
No 189
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.64 E-value=1.5e-14 Score=157.63 Aligned_cols=207 Identities=19% Similarity=0.310 Sum_probs=173.2
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 003445 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDF 109 (819)
Q Consensus 30 ~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~f 109 (819)
..|+.++.||.+.|.+ ..++....+..|.+.+.|-.|+|||.-|++++.||.|++|. ++|-...++.....+|.|++|
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence 4688889999999988 46777788899999999999999999999999999999998 556655566667789999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeE
Q 003445 110 HPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQ 189 (819)
Q Consensus 110 sp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~ 189 (819)
.|+.+.++.+. .+.+.|=.+.-...+..++.|.+-|.++.|++..+.+++|++|-..++||.. |..+..-..|+.+|+
T Consensus 154 ~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~IT 231 (737)
T KOG1524|consen 154 APNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAIT 231 (737)
T ss_pred CCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcccee
Confidence 99988776653 4678887777777777889999999999999999999999999999999975 677777778999999
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEE
Q 003445 190 CIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVF 253 (819)
Q Consensus 190 sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vw 253 (819)
+++|+|+ ..++.++. ++++ -..+..+.|..++|++||..+++|+..+..++
T Consensus 232 Sva~npd-~~~~v~S~-nt~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 232 SVAFNPE-KDYLLWSY-NTAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeccc-cceeeeee-eeee-----------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 9999999 66666654 3344 22345677999999999999999987764443
No 190
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.63 E-value=8.4e-15 Score=149.50 Aligned_cols=199 Identities=23% Similarity=0.426 Sum_probs=157.8
Q ss_pred ccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce-EEEec-----CCCCCeEEEEEcC--CCCEEEEEECCCeEEE
Q 003445 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA-ILSLS-----GHTSGIDSVSFDS--SEVLVAAGAASGTIKL 85 (819)
Q Consensus 14 ~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~-i~~l~-----~h~~~V~~l~fsp--dg~~Lasgs~DG~I~I 85 (819)
.|-+.|.|+.|.| ++.-+++-. |..|.+|++..+.. +..+. +|....++-+|+| +++.+++. .|+++..
T Consensus 121 eavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~ 197 (370)
T KOG1007|consen 121 EAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQF 197 (370)
T ss_pred HHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEE
Confidence 3456899999999 444566554 78899999977665 33332 3566788889988 77888775 5899999
Q ss_pred EECCCCeEEEEE-cCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCC-CeEEEEEecCCCCeEEEEEcC-CCCEEEEE
Q 003445 86 WDLEEAKIVRTL-TGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRK-KGCIHTYKGHTRGVNAIRFTP-DGRWVVSG 161 (819)
Q Consensus 86 WDl~s~~~i~~l-~~h~~~I~sl~fsp~g~-~Lasgs~Dg~I~IwDi~t-~~~i~~~~~h~~~I~sl~fsp-dg~~L~sg 161 (819)
||+++.+....+ ..|...|..++|+|+.+ +|++++.||.|+|||.+. ..++..+.+|...|+++.|+| ...+|++|
T Consensus 198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred EEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEec
Confidence 999987765555 46888999999999876 588999999999999985 457889999999999999999 45678899
Q ss_pred ECCCeEEEEECCCC-----------------------------eEEEEEecCCCCeEEEEEeCCC-CEEEEEECCCeEEE
Q 003445 162 GEDNTVKLWDLTAG-----------------------------KLLHDFKCHEGQIQCIDFHPHE-FLLATGSADRTVKF 211 (819)
Q Consensus 162 s~Dg~I~IwDl~t~-----------------------------~~i~~~~~h~~~I~sl~fspdg-~~Lasgs~Dg~I~i 211 (819)
+.|..|.+|....- ..+.++..|...|++++|+.-. -++|+-+.||.+.|
T Consensus 278 ~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 278 GSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred CCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 99999999965321 1344677799999999998754 46778899999988
Q ss_pred EECC
Q 003445 212 WDLE 215 (819)
Q Consensus 212 wDl~ 215 (819)
=.+.
T Consensus 358 s~V~ 361 (370)
T KOG1007|consen 358 SSVP 361 (370)
T ss_pred ecCC
Confidence 6654
No 191
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=2.7e-14 Score=147.95 Aligned_cols=237 Identities=16% Similarity=0.237 Sum_probs=191.0
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC---ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP---NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~---~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
+.|.--..+|+|.+|++ +...+|++..+..|.||..... +..+++..|...|++|+|+|..+.|++++.|..-++|
T Consensus 4 ~~~~~~~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred EEeeeccCceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence 44555568999999998 6677999999999999988554 4678899999999999999999999999999999999
Q ss_pred EC-CCC--eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEE----EEEecCCCCeEEEEEcCCCCEEE
Q 003445 87 DL-EEA--KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI----HTYKGHTRGVNAIRFTPDGRWVV 159 (819)
Q Consensus 87 Dl-~s~--~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i----~~~~~h~~~I~sl~fspdg~~L~ 159 (819)
.. ..+ ++...+..+....+++.|+|.++.||+|+....|.||-++...-- +.-+.+.+.|.++.|+|++-+|+
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla 162 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA 162 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence 98 444 344556668899999999999999999999999999988754422 23345678899999999999999
Q ss_pred EEECCCeEEEEECC-----C-------------CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe-EE
Q 003445 160 SGGEDNTVKLWDLT-----A-------------GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE-LI 220 (819)
Q Consensus 160 sgs~Dg~I~IwDl~-----t-------------~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~-~l 220 (819)
+|+.|+..++|..- . |+++.++....+.+..+.|+|+|..|+-.+.|..+.+-|..... .+
T Consensus 163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v 242 (361)
T KOG1523|consen 163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERV 242 (361)
T ss_pred ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhc
Confidence 99999999998642 1 23455554566789999999999999999999999999987764 34
Q ss_pred EEeCCCCCCeeEEEEeCCCCEEEEEEC
Q 003445 221 GSAGPETSGVRCLTFNPDGRTLLCGLH 247 (819)
Q Consensus 221 ~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (819)
.......-+..++.|-.+...+++|.+
T Consensus 243 ~~~~~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 243 QSVATAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred cchhhccCCceeeEeecCCceeecCCC
Confidence 444444577788888777666655543
No 192
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.62 E-value=4.7e-14 Score=166.15 Aligned_cols=252 Identities=19% Similarity=0.296 Sum_probs=181.0
Q ss_pred cccceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC-------ceEEEecCCCCCeEEEEEcCCCCEEEE
Q 003445 4 KRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-------NAILSLSGHTSGIDSVSFDSSEVLVAA 76 (819)
Q Consensus 4 kr~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~-------~~i~~l~~h~~~V~~l~fspdg~~Las 76 (819)
-|...+..+..|+..|..++.++..+.+|++|+.||+|++|+..+- +...++......+.++.+.+.+..+|+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 3556778889999999999999877789999999999999998431 223334445678999999999999999
Q ss_pred EECCCeEEEEECCCC-------eEEEEEcCCCC--CeEEEEEec-CCC-EEEEEECCCcEEEEECCCCeEEEEEec--CC
Q 003445 77 GAASGTIKLWDLEEA-------KIVRTLTGHRS--NCISVDFHP-FGE-FFASGSLDTNLKIWDIRKKGCIHTYKG--HT 143 (819)
Q Consensus 77 gs~DG~I~IWDl~s~-------~~i~~l~~h~~--~I~sl~fsp-~g~-~Lasgs~Dg~I~IwDi~t~~~i~~~~~--h~ 143 (819)
++.||.|++.+++.. ...+....+.. .+..-+|.. .+. .++.+...+.|..||++.....++++. ..
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 999999999998752 12222222222 233333432 223 688888899999999998776666542 34
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEeCC---CCEEEEEE--CCCeEEEEECCCC
Q 003445 144 RGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK-CHEGQIQCIDFHPH---EFLLATGS--ADRTVKFWDLETF 217 (819)
Q Consensus 144 ~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~-~h~~~I~sl~fspd---g~~Lasgs--~Dg~I~iwDl~~~ 217 (819)
+.|++++.+|.+.|+++|+..|.+.+||++-+..+..+. .+..+|..+..+|- ..+.++++ ..+.|.+|++.+|
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 679999999999999999999999999999988887776 34577888887774 24555444 4778999999988
Q ss_pred eEEEEeCCC-------------------C-CCeeEEEEeCCCCEEEE-EECCCEEEEEec
Q 003445 218 ELIGSAGPE-------------------T-SGVRCLTFNPDGRTLLC-GLHESLKVFSWE 256 (819)
Q Consensus 218 ~~l~~~~~~-------------------~-~~I~sl~fspdg~~Las-gs~d~I~Vwd~~ 256 (819)
.+...+... . ..+.+ .+...+.++.+ |++..|+.||..
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~-~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISC-GVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceee-ecccCCceeeecCCccceeeccCC
Confidence 655443221 0 11222 23333344454 455589999864
No 193
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=7.7e-16 Score=165.53 Aligned_cols=274 Identities=18% Similarity=0.261 Sum_probs=219.8
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~ 96 (819)
..-..+.|+. +|+.|+.|+..|.|-.+|+.+++....+. -...|.++.|-.+.+++|++ ....++||| ..|..++.
T Consensus 130 FGPY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHC 205 (545)
T KOG1272|consen 130 FGPYHLDYTR-NGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHC 205 (545)
T ss_pred cCCeeeeecC-CccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEee
Confidence 3456778886 78889999999999999999999988887 45679999999999888875 678899999 55777777
Q ss_pred EcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003445 97 LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK 176 (819)
Q Consensus 97 l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~ 176 (819)
++.| ..|..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|..-.+-+|...|+|.+|.....+
T Consensus 206 lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 7755 568899999999899999999999999999999999998888899999999998899999999999999999999
Q ss_pred EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEe-
Q 003445 177 LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSW- 255 (819)
Q Consensus 177 ~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~- 255 (819)
++..+-+|.++|.+++++++|.|+|+.+.|..++|||+++...+.++.. ..+...++||..| .|+++..+.+.||.=
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLALSYGDHVQIWKDA 362 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-ceeeecCCeeeeehhh
Confidence 9998999999999999999999999999999999999999988877765 4567889998665 677887788999942
Q ss_pred cCC--ceeeee--eccccceeEeEe-cCCCEEEEEEcCCeEEEEEec
Q 003445 256 EPI--RCHDAV--DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 256 ~~~--~~~~~~--~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld 297 (819)
-.. .+...+ ..-...+.++.+ +-..+|+.|-..|.-.|....
T Consensus 363 ~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPG 409 (545)
T KOG1272|consen 363 LKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPG 409 (545)
T ss_pred hcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccC
Confidence 111 111111 111124444444 344666666665544444333
No 194
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.62 E-value=6.8e-15 Score=148.63 Aligned_cols=246 Identities=19% Similarity=0.350 Sum_probs=190.4
Q ss_pred CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc-CCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 003445 49 PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT-GHRSNCISVDFHPFGEFFASGSLDTNLKI 127 (819)
Q Consensus 49 ~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~-~h~~~I~sl~fsp~g~~Lasgs~Dg~I~I 127 (819)
+.+...+.+|.+.|+++.|..+++ |++|...|.|++|++.+......+. .|...|+.+.--|+ ..+.+-+.|+.+.+
T Consensus 4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred CCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence 345677889999999999998886 7799999999999999998888888 56678888888886 56888889999999
Q ss_pred EECCCCeEEEE--------------E-------------e--------------------------cCCCCeEEEEEcC-
Q 003445 128 WDIRKKGCIHT--------------Y-------------K--------------------------GHTRGVNAIRFTP- 153 (819)
Q Consensus 128 wDi~t~~~i~~--------------~-------------~--------------------------~h~~~I~sl~fsp- 153 (819)
|++..+..+.. + . +..+.++|..+.-
T Consensus 82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence 99865321110 0 0 0122344444332
Q ss_pred CCC--EEEEEECCCeEEEEECCCCeEEE----------EEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC--eE
Q 003445 154 DGR--WVVSGGEDNTVKLWDLTAGKLLH----------DFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF--EL 219 (819)
Q Consensus 154 dg~--~L~sgs~Dg~I~IwDl~t~~~i~----------~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~--~~ 219 (819)
++. ++++|.++|.+.+||+.++..+. ....|..+|.++.|.+.-..=++|+.+..+..|++... .+
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl 241 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL 241 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc
Confidence 232 56788899999999999984433 34468899999999887666678888888999988642 22
Q ss_pred --EEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeEecCC-CEEEEEEcCCeEEEEE
Q 003445 220 --IGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEG-KLLGCSYNQSCVGVWV 295 (819)
Q Consensus 220 --l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg-~lLa~~~~Dg~V~IW~ 295 (819)
-........+|..+.+-||++.+++++.| .|+||.|.+.+.+.++..+...+.++.++.+ .++|.++.|+.|.+|+
T Consensus 242 q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 242 QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 22233345678999999999999987766 6999999999999999999999999988655 9999999999999998
Q ss_pred e
Q 003445 296 V 296 (819)
Q Consensus 296 l 296 (819)
+
T Consensus 322 L 322 (323)
T KOG0322|consen 322 L 322 (323)
T ss_pred c
Confidence 6
No 195
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=5.2e-15 Score=162.84 Aligned_cols=221 Identities=20% Similarity=0.326 Sum_probs=169.7
Q ss_pred cccceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC----------ceEEEecCCCCCeEEEEEcCCCCE
Q 003445 4 KRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----------NAILSLSGHTSGIDSVSFDSSEVL 73 (819)
Q Consensus 4 kr~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~----------~~i~~l~~h~~~V~~l~fspdg~~ 73 (819)
+...++.+|.+|.++|.|+++.+ ++..+++|+.||+|+.|++... .....+.||++.|+.++++.....
T Consensus 332 ~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~ 410 (577)
T KOG0642|consen 332 KDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR 410 (577)
T ss_pred cceeeeEEEecccCceEEEEecC-CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc
Confidence 45567889999999999999998 7889999999999999966311 233467799999999999999999
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEcCCC--CCeEEEEEecCCC-EEEEEECCCcEEEEECCCCeEEEEEec-------CC
Q 003445 74 VAAGAASGTIKLWDLEEAKIVRTLTGHR--SNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKG-------HT 143 (819)
Q Consensus 74 Lasgs~DG~I~IWDl~s~~~i~~l~~h~--~~I~sl~fsp~g~-~Lasgs~Dg~I~IwDi~t~~~i~~~~~-------h~ 143 (819)
|++++.||++++|+...... .++.... +.-.+++|-.... +.++...-+.--+++......+..+.. ..
T Consensus 411 Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~ 489 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRY 489 (577)
T ss_pred eeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCccccc
Confidence 99999999999999876655 3343222 2334555543321 222222233333444444444444332 12
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 003445 144 RGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA 223 (819)
Q Consensus 144 ~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~ 223 (819)
..+.-+.++|.+.+.+++..|+.|+++|..+++.++....|...++++++.|+|.+|++|+.||.+++|.+....++...
T Consensus 490 ~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 490 PQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred CccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999887777665
Q ss_pred CCC
Q 003445 224 GPE 226 (819)
Q Consensus 224 ~~~ 226 (819)
..|
T Consensus 570 ~~~ 572 (577)
T KOG0642|consen 570 TAH 572 (577)
T ss_pred ccc
Confidence 554
No 196
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.61 E-value=3.7e-14 Score=146.95 Aligned_cols=237 Identities=16% Similarity=0.203 Sum_probs=181.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-C
Q 003445 58 HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA---KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK-K 133 (819)
Q Consensus 58 h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~---~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t-~ 133 (819)
...+|+|.+|++|+..++.+..+..|.||..... +..+++..|...|+.|+|.|..+.|++++.|..-++|.... +
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 4579999999999999999999999999998755 46788999999999999999999999999999999999843 3
Q ss_pred --eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE----EEEecCCCCeEEEEEeCCCCEEEEEECCC
Q 003445 134 --GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLL----HDFKCHEGQIQCIDFHPHEFLLATGSADR 207 (819)
Q Consensus 134 --~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i----~~~~~h~~~I~sl~fspdg~~Lasgs~Dg 207 (819)
++...+..++..++++.|+|.++.|++|+....|.||-+...+-- +.-+.+.+.|+++.|||++-+|++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 344456678999999999999999999999999999988654322 12234667899999999999999999999
Q ss_pred eEEEEECC------------------CCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCc-eeeeeecc
Q 003445 208 TVKFWDLE------------------TFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIR-CHDAVDVG 267 (819)
Q Consensus 208 ~I~iwDl~------------------~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~-~~~~~~~~ 267 (819)
..++|..- -|+++.++....+.+..+.|+|+|..|+..+.+ .+.+-|..... ....+...
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~ 248 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATA 248 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhc
Confidence 99998641 133444455567889999999999999966666 46666554332 33333333
Q ss_pred ccceeEeEecCCCEEEEEEcCCeEEEE
Q 003445 268 WSRLSDLNVHEGKLLGCSYNQSCVGVW 294 (819)
Q Consensus 268 ~s~i~~l~~~dg~lLa~~~~Dg~V~IW 294 (819)
.-+...+.+-....++++++|..=.++
T Consensus 249 ~lP~ls~~~ise~~vv~ag~~c~P~lf 275 (361)
T KOG1523|consen 249 QLPLLSVSWISENSVVAAGYDCGPVLF 275 (361)
T ss_pred cCCceeeEeecCCceeecCCCCCceEE
Confidence 445555555555555555555443333
No 197
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=4.6e-14 Score=161.51 Aligned_cols=219 Identities=15% Similarity=0.150 Sum_probs=156.6
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEEEeC-C--CeEEEEECCCCce--EEEecCCCCCeEEEEEcCCCCEEEEEE-CCCe
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGE-D--HKVNLWAIGKPNA--ILSLSGHTSGIDSVSFDSSEVLVAAGA-ASGT 82 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Latgs~-D--g~V~IWdl~~~~~--i~~l~~h~~~V~~l~fspdg~~Lasgs-~DG~ 82 (819)
.+.+..|...|.+.+|+|++.. |+.++. + ..|++||+.+++. +..+.+| ...++|+|||+.|+.++ .+|.
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~-la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~ 271 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSK-LAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGV 271 (429)
T ss_pred ceEeccCCCccccceEcCCCCE-EEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCc
Confidence 4556778889999999996554 554433 2 4799999987754 3333343 34689999999887764 6776
Q ss_pred EEEE--ECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEE
Q 003445 83 IKLW--DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTPDGRWV 158 (819)
Q Consensus 83 I~IW--Dl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs-~Dg~I~IwDi~t~-~~i~~~~~h~~~I~sl~fspdg~~L 158 (819)
+.|| |+.+++. ..+..+...+....|+|+|+.|+.++ .+|...||++... .....+ .+.. .+..|+|||++|
T Consensus 272 ~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~i 347 (429)
T PRK01742 272 LNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTL 347 (429)
T ss_pred EEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEE
Confidence 5555 6666654 45566777788999999999877655 5778888876432 222223 3433 467899999999
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEC--CCCeEEEEeCCCCCCeeEEEEe
Q 003445 159 VSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDL--ETFELIGSAGPETSGVRCLTFN 236 (819)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl--~~~~~l~~~~~~~~~I~sl~fs 236 (819)
+.++.++ +.+||+.+++.......+ ....+.|+|+|.+|+.++.++.+.+|++ .++..+..+..+.+.+...+|+
T Consensus 348 a~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ws 424 (429)
T PRK01742 348 VMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWS 424 (429)
T ss_pred EEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccC
Confidence 8887755 566999988754332222 3356789999999999999998888875 3577788888787888899999
Q ss_pred CC
Q 003445 237 PD 238 (819)
Q Consensus 237 pd 238 (819)
|-
T Consensus 425 p~ 426 (429)
T PRK01742 425 PY 426 (429)
T ss_pred CC
Confidence 74
No 198
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=3.8e-14 Score=147.90 Aligned_cols=190 Identities=20% Similarity=0.347 Sum_probs=152.4
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEec--CCCEEEEEECCCcEEEEECCCCeEEEE--EecCC-CCe
Q 003445 72 VLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHP--FGEFFASGSLDTNLKIWDIRKKGCIHT--YKGHT-RGV 146 (819)
Q Consensus 72 ~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp--~g~~Lasgs~Dg~I~IwDi~t~~~i~~--~~~h~-~~I 146 (819)
..++++...|.|++||..+++.+..++++...+..+.|.. ....+.+++.||+|++||+|....... +..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688999999999999999999999999999999999976 356799999999999999997655433 44454 456
Q ss_pred EEEEEcCCCCEEEEEEC----CCeEEEEECCCCeE-EEEE-ecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCCe-
Q 003445 147 NAIRFTPDGRWVVSGGE----DNTVKLWDLTAGKL-LHDF-KCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFE- 218 (819)
Q Consensus 147 ~sl~fspdg~~L~sgs~----Dg~I~IwDl~t~~~-i~~~-~~h~~~I~sl~fspd-g~~Lasgs~Dg~I~iwDl~~~~- 218 (819)
.|++..-.++.+++|.. +..|.+||+|..+. +..+ ..|...|+++.|||. .++|++|+.||.|.+||++...
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 77777667788888753 67899999998765 4443 469999999999995 6799999999999999997642
Q ss_pred --EEEEeCCCCCCeeEEEEeCCC--CEEEEEECCCEEEEEecCCcee
Q 003445 219 --LIGSAGPETSGVRCLTFNPDG--RTLLCGLHESLKVFSWEPIRCH 261 (819)
Q Consensus 219 --~l~~~~~~~~~I~sl~fspdg--~~Lasgs~d~I~Vwd~~~~~~~ 261 (819)
.+...-.+...|.++.|..++ +++.....++..+|+|+.+.+.
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence 122233456779999999988 7666666778999999987643
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.8e-13 Score=156.52 Aligned_cols=207 Identities=14% Similarity=0.108 Sum_probs=147.3
Q ss_pred CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeE--EEEEcCCCCCeEEEEEecC
Q 003445 38 DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEEAKI--VRTLTGHRSNCISVDFHPF 112 (819)
Q Consensus 38 Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D---G~I~IWDl~s~~~--i~~l~~h~~~I~sl~fsp~ 112 (819)
+..|.+||..... ...+..|...+....|+|||+.|+.++.+ ..|++||+.+++. +..+.+| ...++|+|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4689999985444 55677788899999999999999887654 4799999988754 3333333 346899999
Q ss_pred CCEEEEEE-CCCcEE--EEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCC-eEEEEEecCCCC
Q 003445 113 GEFFASGS-LDTNLK--IWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLWDLTAG-KLLHDFKCHEGQ 187 (819)
Q Consensus 113 g~~Lasgs-~Dg~I~--IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs-~Dg~I~IwDl~t~-~~i~~~~~h~~~ 187 (819)
|+.|+.++ .+|.+. +||+.++.. ..+..+...+....|+|||++|+.++ .+|...||++... .....+ .+.+
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC-
Confidence 99888765 677655 457666653 45555667788999999999877665 4677777776432 222222 3333
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEe
Q 003445 188 IQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (819)
Q Consensus 188 I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (819)
.+..|+|+|++|+..+.++ +.+||+.+++........ ....+.|+|||++|+.++.+ +..+|.+
T Consensus 336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred -CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 4678999999999888765 566999988754333222 23567899999999987654 5666654
No 200
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.58 E-value=9.9e-14 Score=151.70 Aligned_cols=273 Identities=17% Similarity=0.290 Sum_probs=180.6
Q ss_pred EEEEeeCCCcEEEEEeCCCeEEEEECCCCceEE------EecCCCCCeEEEEE-----cCCCCEEEEEECCCeEEEEECC
Q 003445 21 CLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL------SLSGHTSGIDSVSF-----DSSEVLVAAGAASGTIKLWDLE 89 (819)
Q Consensus 21 ~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~------~l~~h~~~V~~l~f-----spdg~~Lasgs~DG~I~IWDl~ 89 (819)
...++-++.++.+-.+ ..+++|+...+.... .+. .....|-+| .+.+--++.|-..|.|.+.|..
T Consensus 128 ~~~~~~~gd~lcFnvg--~~lyv~~~~g~~~~~~pi~k~~y~--gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 128 NTNQSGKGDRLCFNVG--RELYVYSYRGAADLSKPIDKREYK--GTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred eccccCCCCEEEEecC--CeEEEEEccCcchhccchhhhccc--CCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 3344433344333333 347788765322111 112 223345555 3456667788888999999976
Q ss_pred CCeEEEEEc----CCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCC--------------CeE--EEE----------
Q 003445 90 EAKIVRTLT----GHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRK--------------KGC--IHT---------- 138 (819)
Q Consensus 90 s~~~i~~l~----~h~~~I~sl~fsp~g~-~Lasgs~Dg~I~IwDi~t--------------~~~--i~~---------- 138 (819)
..+..+.+. -.+..|+++.|-|.+. .|+++-.+|.+++||..- +.. +.+
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 533222121 1346899999998654 677778899999997631 111 111
Q ss_pred --EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 003445 139 --YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (819)
Q Consensus 139 --~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~ 216 (819)
+.--.+.|..++|+|||++|++.+.||.++|||..+.+++..++..-+...|++|+|||+||++|++|--|.||.+..
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence 111234688999999999999999999999999999988888887778999999999999999999999999999999
Q ss_pred CeEEEEeCCCCCCeeEEEEeCCCCEEEEEE--------CCC----EEEEEecCCceeeeeeccccceeEeEec--CCCEE
Q 003445 217 FELIGSAGPETSGVRCLTFNPDGRTLLCGL--------HES----LKVFSWEPIRCHDAVDVGWSRLSDLNVH--EGKLL 282 (819)
Q Consensus 217 ~~~l~~~~~~~~~I~sl~fspdg~~Lasgs--------~d~----I~Vwd~~~~~~~~~~~~~~s~i~~l~~~--dg~lL 282 (819)
.+.+..-++|..+|..++|+| |..+.. ++. .+-+..+.. ..-.....+...+.-. ....+
T Consensus 364 rRVVARGqGHkSWVs~VaFDp---ytt~~ee~~~~~~~~~~~~~~~~~~~~r~~---~~~S~~~~~~s~~~~~~~v~YRf 437 (636)
T KOG2394|consen 364 RRVVARGQGHKSWVSVVAFDP---YTTSTEEWNNFSGMDSTFSDVAHDFEIRAN---GTGSAEGCPLSSFNRINSVTYRF 437 (636)
T ss_pred ceEEEeccccccceeeEeecc---cccccccccccccccccccchhcccccccC---CCCCcCCCcccccccccceEEEe
Confidence 999999999999999999997 222211 110 000000000 0000111111111111 23567
Q ss_pred EEEEcCCeEEEEEecCCceee
Q 003445 283 GCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 283 a~~~~Dg~V~IW~ld~~~~~p 303 (819)
++.+.|..+.+||+...-+.+
T Consensus 438 GSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 438 GSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred ecccccceEEEEecchhhccc
Confidence 888999999999999888776
No 201
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.2e-14 Score=158.74 Aligned_cols=215 Identities=25% Similarity=0.406 Sum_probs=167.0
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec-CCCCCeEEEEEcC--CCCEEEEEECCCeE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS-GHTSGIDSVSFDS--SEVLVAAGAASGTI 83 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~-~h~~~V~~l~fsp--dg~~Lasgs~DG~I 83 (819)
-.-+++.||++.|+|++|+. +|.+|++|++|-.+.|||.-..+.++.+. +|...|.+++|-| +.+++++|..|..|
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred chhhhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 34468999999999999998 77899999999999999998888887764 8999999999988 56799999999999
Q ss_pred EEEECCC----------CeEEEEEcCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeE-------EE---EEecC
Q 003445 84 KLWDLEE----------AKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGC-------IH---TYKGH 142 (819)
Q Consensus 84 ~IWDl~s----------~~~i~~l~~h~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~t~~~-------i~---~~~~h 142 (819)
+++|+.. ......+..|...|..++-.|++ ..|.+++.||+|+-||++.... .. .+...
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 9999974 23455567899999999999998 6799999999999999986321 11 11112
Q ss_pred CCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC--------Ce----------EEEEEe-cCC----C-------CeEEE
Q 003445 143 TRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTA--------GK----------LLHDFK-CHE----G-------QIQCI 191 (819)
Q Consensus 143 ~~~I~sl~fsp-dg~~L~sgs~Dg~I~IwDl~t--------~~----------~i~~~~-~h~----~-------~I~sl 191 (819)
--...|+..+| +..+|++|+.|...++||.+. +. ++..|. +|- + .++-+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV 279 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence 23467889999 567899999999999999532 11 222222 121 1 15667
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003445 192 DFHPHEFLLATGSADRTVKFWDLETFELIGS 222 (819)
Q Consensus 192 ~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~ 222 (819)
.|+|+|.-|+..-..-.|+++|+..++....
T Consensus 280 tfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 280 TFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred EECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 8999998777766667899999987765544
No 202
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.57 E-value=3.4e-14 Score=156.91 Aligned_cols=240 Identities=20% Similarity=0.332 Sum_probs=174.2
Q ss_pred EcCCCCEEEE--EECCCeEEEEECCCC-eE----EEEEcCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCe----
Q 003445 67 FDSSEVLVAA--GAASGTIKLWDLEEA-KI----VRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKG---- 134 (819)
Q Consensus 67 fspdg~~Las--gs~DG~I~IWDl~s~-~~----i~~l~~h~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~t~~---- 134 (819)
|+.+...+++ .+..|.|.||++... +. +-.+. ....|+.+.|.|.. ..|++++.||.|++|.+..+.
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 3344444443 455799999999642 21 22222 45679999999954 579999999999999987543
Q ss_pred ---EEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEE
Q 003445 135 ---CIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVK 210 (819)
Q Consensus 135 ---~i~~~~~h~~~I~sl~fsp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~ 210 (819)
+-..+..|...|+++.|+| -.+.|++++.|.+|++||+++++....+.+|.+.|..++|+|+|+.+|+.+.||+|+
T Consensus 666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence 4556788999999999999 456889999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeE-EEEeCCC-CCCeeEEEEeCCCCEEEEEECC-----CEEEEEecCCce--e--eeeeccccceeEeE-ecC
Q 003445 211 FWDLETFEL-IGSAGPE-TSGVRCLTFNPDGRTLLCGLHE-----SLKVFSWEPIRC--H--DAVDVGWSRLSDLN-VHE 278 (819)
Q Consensus 211 iwDl~~~~~-l~~~~~~-~~~I~sl~fspdg~~Lasgs~d-----~I~Vwd~~~~~~--~--~~~~~~~s~i~~l~-~~d 278 (819)
+|..++++. +..-.+. ...-..|.|.-||+++++.+.+ .+.+|+..+... + ..+++.-+.+-... ...
T Consensus 746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds 825 (1012)
T KOG1445|consen 746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDS 825 (1012)
T ss_pred EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCC
Confidence 999987654 3322221 2223567888899999866544 388888766432 2 22333333322222 233
Q ss_pred CCEEEEEEcCCeEEEEEecCCceeeeeeccc
Q 003445 279 GKLLGCSYNQSCVGVWVVDISRIEPYTIGSV 309 (819)
Q Consensus 279 g~lLa~~~~Dg~V~IW~ld~~~~~p~~~~~~ 309 (819)
+-++++|-.|..|..|.+-- ..||.....
T Consensus 826 ~~lfltGKGD~~v~~yEv~~--esPy~lpl~ 854 (1012)
T KOG1445|consen 826 NVLFLTGKGDRFVNMYEVIY--ESPYLLPLA 854 (1012)
T ss_pred ceEEEecCCCceEEEEEecC--CCceeeecc
Confidence 56667888899999887654 345555544
No 203
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=2.9e-14 Score=152.71 Aligned_cols=194 Identities=20% Similarity=0.309 Sum_probs=156.6
Q ss_pred EEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003445 20 NCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (819)
Q Consensus 20 ~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~ 99 (819)
.+++|+. ++..|++|+.||+++||++.+...+.....|...|.++.|+||+++|++-+.| ...||+.+++..+.....
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899998 66789999999999999998888888888999999999999999999999999 899999999977666552
Q ss_pred --CCCCeEEEEEecCC---CE--EEEEECCCcEEEEECCCCeE------EEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003445 100 --HRSNCISVDFHPFG---EF--FASGSLDTNLKIWDIRKKGC------IHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (819)
Q Consensus 100 --h~~~I~sl~fsp~g---~~--Lasgs~Dg~I~IwDi~t~~~------i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~ 166 (819)
-......+.|..++ .+ ++....-+.|..||+..+.- .+.+. ....|.+++.+.+|++++.|+.||.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~-~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK-RFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh-ccCcceeEEEcCCCcEEEEeccCCc
Confidence 23346677888776 33 33333456677776643221 11122 2346999999999999999999999
Q ss_pred EEEEECCCCeEEEEEe-cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 003445 167 VKLWDLTAGKLLHDFK-CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (819)
Q Consensus 167 I~IwDl~t~~~i~~~~-~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~ 216 (819)
|.|++..+-+.++.++ .|...|+.+.|+|+.+++++.+.|....+..+.-
T Consensus 305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999888777665 6889999999999999999999999888877653
No 204
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1e-12 Score=151.56 Aligned_cols=240 Identities=18% Similarity=0.211 Sum_probs=179.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC----CeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 003445 58 HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE----AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK 133 (819)
Q Consensus 58 h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s----~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~ 133 (819)
|.-.++|.+++|+++++++|..||.|.+|.--. ......+.-|...|.++.|+++|.+|++|+..|.+.+|.+.++
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence 555678999999999999999999999996422 2244567779999999999999999999999999999999998
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec-----------CCCCeEEEEEeCCCCEEEE
Q 003445 134 GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC-----------HEGQIQCIDFHPHEFLLAT 202 (819)
Q Consensus 134 ~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~-----------h~~~I~sl~fspdg~~Las 202 (819)
+ .+-+..-.++|..+.++||+.+.+....|+.|.+....+......+.+ ..+-.+.++++|.-+.++.
T Consensus 284 ~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl 362 (792)
T KOG1963|consen 284 K-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL 362 (792)
T ss_pred C-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceee
Confidence 8 445566778999999999999999999999999998765443333322 1344678899997778888
Q ss_pred EECCCeEEEEECCCCeEEEEeC-----CC------CCCeeEEEEeCCCCEEEEEEC--------C---CEEEEEecCCce
Q 003445 203 GSADRTVKFWDLETFELIGSAG-----PE------TSGVRCLTFNPDGRTLLCGLH--------E---SLKVFSWEPIRC 260 (819)
Q Consensus 203 gs~Dg~I~iwDl~~~~~l~~~~-----~~------~~~I~sl~fspdg~~Lasgs~--------d---~I~Vwd~~~~~~ 260 (819)
.+..|.|.+||+.+...+..+. .+ .-.++.++.+-.|.++++.-. + .+++|.+++...
T Consensus 363 n~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~k 442 (792)
T KOG1963|consen 363 NGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSK 442 (792)
T ss_pred cCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcc
Confidence 8899999999998877665532 11 234677888888999997631 1 388998876543
Q ss_pred ee----eeecccc--ceeEeEe-cC-CCEEEEEEcCCeEEEEEecC
Q 003445 261 HD----AVDVGWS--RLSDLNV-HE-GKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 261 ~~----~~~~~~s--~i~~l~~-~d-g~lLa~~~~Dg~V~IW~ld~ 298 (819)
-- .+..... .+..... .. ....++++.||.++||.+..
T Consensus 443 t~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~ 488 (792)
T KOG1963|consen 443 TFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTD 488 (792)
T ss_pred eeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEec
Confidence 22 2222222 1222222 22 23778899999999999843
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=3.9e-14 Score=151.74 Aligned_cols=194 Identities=21% Similarity=0.321 Sum_probs=153.6
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEec-
Q 003445 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG- 141 (819)
Q Consensus 63 ~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~- 141 (819)
.+++|+.+|..|++|+.||++++|++.+...+.....|...|.+++|+|||++|++.+.| ..+||+.+++-++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 678999999999999999999999999888888888899999999999999999999999 899999999977766542
Q ss_pred -CCCCeEEEEEcCCC---CEEE--EEECCCeEEEEECCCCeE-----EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEE
Q 003445 142 -HTRGVNAIRFTPDG---RWVV--SGGEDNTVKLWDLTAGKL-----LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVK 210 (819)
Q Consensus 142 -h~~~I~sl~fspdg---~~L~--sgs~Dg~I~IwDl~t~~~-----i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~ 210 (819)
....+..+.|+.|+ .+++ .....+.|+.||+..... ..........|.+++.+++|+++|.|+.||.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 23346678888776 3333 333445677776653221 111112345799999999999999999999999
Q ss_pred EEECCCCeEEEEe-CCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecC
Q 003445 211 FWDLETFELIGSA-GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP 257 (819)
Q Consensus 211 iwDl~~~~~l~~~-~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~ 257 (819)
||+..+.+.++.. +.|...|+.+.|+||.++++..+.+ ...|..+..
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999998877665 5788899999999999999965544 566666543
No 206
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.4e-14 Score=155.04 Aligned_cols=287 Identities=16% Similarity=0.244 Sum_probs=219.6
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec-CCCCCeEEEEEcC--CCCEEEEEECCCeEEEE
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS-GHTSGIDSVSFDS--SEVLVAAGAASGTIKLW 86 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~-~h~~~V~~l~fsp--dg~~Lasgs~DG~I~IW 86 (819)
..|..|.+.|+.|.|.. .+.+|++|+.|..|.+||+..+.....+. +|...|....|-| +.+-+++++.||.+++=
T Consensus 136 ~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 46789999999999998 77899999999999999998888777665 7999999999987 45678999999999998
Q ss_pred ECCCCeE---EEEEcCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCeEEEEE---ecCCC---CeEEEEEcCCC-
Q 003445 87 DLEEAKI---VRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTY---KGHTR---GVNAIRFTPDG- 155 (819)
Q Consensus 87 Dl~s~~~---i~~l~~h~~~I~sl~fsp~g~-~Lasgs~Dg~I~IwDi~t~~~i~~~---~~h~~---~I~sl~fspdg- 155 (819)
.+..... ...+..|.++|.-++.-|+.. .|.+++.|+.+.-+|+++..+-..+ ..+.. ....++..|..
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 7754332 334567999999999999776 4889999999999999987543332 22333 56788899854
Q ss_pred CEEEEEECCCeEEEEECCCCe------EEEEEec------CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC--C----
Q 003445 156 RWVVSGGEDNTVKLWDLTAGK------LLHDFKC------HEGQIQCIDFHPHEFLLATGSADRTVKFWDLET--F---- 217 (819)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~------~i~~~~~------h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~--~---- 217 (819)
..+++|+.|..+++||.+.-. .+..|.. ..-.|+++.|+.++.-|.+...|-.|++|.-.. |
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~ 374 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD 374 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC
Confidence 489999999999999987532 2233322 234599999998877777777788899995432 2
Q ss_pred ------eEEEE-eCCCC--CCeeEEEE-eCCCCEEEEEECCC-EEEEEecCCceeeeeeccccceeEeEecC-CCEEEEE
Q 003445 218 ------ELIGS-AGPET--SGVRCLTF-NPDGRTLLCGLHES-LKVFSWEPIRCHDAVDVGWSRLSDLNVHE-GKLLGCS 285 (819)
Q Consensus 218 ------~~l~~-~~~~~--~~I~sl~f-spdg~~Lasgs~d~-I~Vwd~~~~~~~~~~~~~~s~i~~l~~~d-g~lLa~~ 285 (819)
..+.. +++|. ..|.++.| -|...|+++|++-+ |.||+-.+.+.+.........+.++..|. -.+||++
T Consensus 375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS 454 (559)
T KOG1334|consen 375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS 454 (559)
T ss_pred CCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence 22222 56663 34777765 57889999998875 88888777777777777777777777754 4899999
Q ss_pred EcCCeEEEEEec
Q 003445 286 YNQSCVGVWVVD 297 (819)
Q Consensus 286 ~~Dg~V~IW~ld 297 (819)
+-|..|+||...
T Consensus 455 Gid~DVKIWTP~ 466 (559)
T KOG1334|consen 455 GIDHDVKIWTPL 466 (559)
T ss_pred CCccceeeecCC
Confidence 999999999653
No 207
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=2.6e-13 Score=143.04 Aligned_cols=247 Identities=17% Similarity=0.247 Sum_probs=186.6
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC------CeEEEEEcC-CCCCeEEEEEecCCCEEEEEECCCcE
Q 003445 53 LSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE------AKIVRTLTG-HRSNCISVDFHPFGEFFASGSLDTNL 125 (819)
Q Consensus 53 ~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s------~~~i~~l~~-h~~~I~sl~fsp~g~~Lasgs~Dg~I 125 (819)
+.+.+|.+.|+++.|+.++++|++|+.|..+.+|+++. .+++..... |...|.|++|...+.++++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 34568999999999999999999999999999999863 355655543 56899999999988999999999999
Q ss_pred EEEECCCCeEEEEEec--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEE--EecCCCCeEEEEEeCC-CCE
Q 003445 126 KIWDIRKKGCIHTYKG--HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK-LLHD--FKCHEGQIQCIDFHPH-EFL 199 (819)
Q Consensus 126 ~IwDi~t~~~i~~~~~--h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~-~i~~--~~~h~~~I~sl~fspd-g~~ 199 (819)
.+.|+++.+.+..+.. ..+.|+.+..+|-.+.|++.+.++.|.+||.+... .+.. ..........+.|+|- ..+
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 9999999998887752 22489999999999999999999999999998654 2221 2223456788999996 467
Q ss_pred EEEEECCCeEEEEECCCCeE-EEE------eCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeee-e---cc
Q 003445 200 LATGSADRTVKFWDLETFEL-IGS------AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV-D---VG 267 (819)
Q Consensus 200 Lasgs~Dg~I~iwDl~~~~~-l~~------~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~-~---~~ 267 (819)
|++.+..+-+.+||.+..+. +.. +......-.++.|+|.|..+.+--.+ --.+||+-..+|.-.- + .+
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G 289 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG 289 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence 88888889999999986432 111 12222233678899999988876444 3567788776664321 1 12
Q ss_pred cc---ceeEeEecCCCEEEEEEcCCeEEEEEecCC
Q 003445 268 WS---RLSDLNVHEGKLLGCSYNQSCVGVWVVDIS 299 (819)
Q Consensus 268 ~s---~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~ 299 (819)
+. .+..+.+.+...+++|+.+=.|++|.+.-.
T Consensus 290 Y~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 290 YCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred ceeeeeeeeeeeecceeeeccCcccceEEEecCCC
Confidence 22 234455667778999999999999987643
No 208
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.4e-12 Score=136.97 Aligned_cols=278 Identities=15% Similarity=0.277 Sum_probs=185.9
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec-CCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCC---
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS-GHTSGIDSVSFDSSE-VLVAAGAASGTIKLWDLEEA--- 91 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~-~h~~~V~~l~fspdg-~~Lasgs~DG~I~IWDl~s~--- 91 (819)
..+..++|++ .-..++++..|-.|++|+-.. ++...++ .....|+|++|-|.+ ..|+.|+..| |.+|.....
T Consensus 99 ~dlr~~aWhq-H~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 99 IDLRGVAWHQ-HIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred cceeeEeech-hhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 4678899998 445588889999999999765 4444444 335689999999954 5677777655 999986421
Q ss_pred -eE----------EEEEcCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 003445 92 -KI----------VRTLTGHRSNCISVDFHPFGEFFASGSL-DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV 159 (819)
Q Consensus 92 -~~----------i~~l~~h~~~I~sl~fsp~g~~Lasgs~-Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~ 159 (819)
.. +....+| .+|+++.|.+||..+++++. |..|.|||..++..+.......+.+.-+.|+|||.+|+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 11 1122344 68999999999999999875 67899999999877655544456789999999999999
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC----Ce-----------EEEEe-
Q 003445 160 SGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET----FE-----------LIGSA- 223 (819)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~----~~-----------~l~~~- 223 (819)
++.-|+..++|...............+.|...+|+|+|.+|+.... |.-++|.+.- .. ++..+
T Consensus 255 aAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred EecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 9999999999965443322233334568999999999987766543 3334554421 00 11111
Q ss_pred ----CC----CCCCeeEEEEeCCCCEEEEEECCC---------EEEEEecCCceeeee-----eccccceeEeE--ecCC
Q 003445 224 ----GP----ETSGVRCLTFNPDGRTLLCGLHES---------LKVFSWEPIRCHDAV-----DVGWSRLSDLN--VHEG 279 (819)
Q Consensus 224 ----~~----~~~~I~sl~fspdg~~Lasgs~d~---------I~Vwd~~~~~~~~~~-----~~~~s~i~~l~--~~dg 279 (819)
.. -.+++.+++|+|.|.+|++...++ |.+||....-..... .......-.+. ..++
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g 413 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG 413 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence 11 146789999999999999986653 333443322111111 11111111111 1467
Q ss_pred CEEEEEEcCCeEEEEEecCC
Q 003445 280 KLLGCSYNQSCVGVWVVDIS 299 (819)
Q Consensus 280 ~lLa~~~~Dg~V~IW~ld~~ 299 (819)
.+|..+++-|.+.-|++...
T Consensus 414 ~lLsiaWsTGriq~ypl~f~ 433 (445)
T KOG2139|consen 414 RLLSIAWSTGRIQRYPLTFQ 433 (445)
T ss_pred cEEEEEeccCceEeeeeEEE
Confidence 88888888888887776643
No 209
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.54 E-value=2.2e-12 Score=132.20 Aligned_cols=280 Identities=14% Similarity=0.242 Sum_probs=195.1
Q ss_pred ccceEEEEeccCCCEEEEEEe--eCCCcEEEEEeC----CCeEEEEECC--CCceEEEe-cCCCCCeEEEEEcCCCC---
Q 003445 5 RAYKLQEFVAHSSTVNCLKIG--RKSSRVLVTGGE----DHKVNLWAIG--KPNAILSL-SGHTSGIDSVSFDSSEV--- 72 (819)
Q Consensus 5 r~~kl~~~~~H~~~V~~lafs--p~~~~~Latgs~----Dg~V~IWdl~--~~~~i~~l-~~h~~~V~~l~fspdg~--- 72 (819)
+...+.++.++ -.+.++.|+ ++.+..|+.|+. .+.|.|..+. +++.+..- ..|..+++.+.|.|+..
T Consensus 34 r~~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~ 112 (364)
T KOG0290|consen 34 RRKEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVY 112 (364)
T ss_pred ccceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccC
Confidence 33445555554 368899998 345567888863 4667776553 33333221 25889999999999763
Q ss_pred --EEEEEECCCeEEEEECCC--CeEE--EEE-----cCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCe---EEE
Q 003445 73 --LVAAGAASGTIKLWDLEE--AKIV--RTL-----TGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKG---CIH 137 (819)
Q Consensus 73 --~Lasgs~DG~I~IWDl~s--~~~i--~~l-----~~h~~~I~sl~fsp-~g~~Lasgs~Dg~I~IwDi~t~~---~i~ 137 (819)
+|++. +..+++|.+.. .+.. ..+ ..+..++++.+|+. +-+++.+.+-|.+..|||++++. ...
T Consensus 113 pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT 190 (364)
T KOG0290|consen 113 PDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT 190 (364)
T ss_pred cchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee
Confidence 56654 45799999873 2211 111 23567899999986 45689999999999999999873 345
Q ss_pred EEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEE---ecCCCCeEEEEEeCC-CCEEEEEECC-CeEEE
Q 003445 138 TYKGHTRGVNAIRFTPDG-RWVVSGGEDNTVKLWDLTAGKLLHDF---KCHEGQIQCIDFHPH-EFLLATGSAD-RTVKF 211 (819)
Q Consensus 138 ~~~~h~~~I~sl~fspdg-~~L~sgs~Dg~I~IwDl~t~~~i~~~---~~h~~~I~sl~fspd-g~~Lasgs~D-g~I~i 211 (819)
.+-.|...|..++|...+ +.|++.+.||.+++||++..+--..+ .....+...++|+++ -+++|+-..| ..|.|
T Consensus 191 QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~i 270 (364)
T KOG0290|consen 191 QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVI 270 (364)
T ss_pred EEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEE
Confidence 567899999999999854 47889999999999999976432222 222467888999985 4677776554 47999
Q ss_pred EECCC-CeEEEEeCCCCCCeeEEEEeCCC-CEEEEEECC-CEEEEEecCCceee------eeeccccceeEeEe--cCCC
Q 003445 212 WDLET-FELIGSAGPETSGVRCLTFNPDG-RTLLCGLHE-SLKVFSWEPIRCHD------AVDVGWSRLSDLNV--HEGK 280 (819)
Q Consensus 212 wDl~~-~~~l~~~~~~~~~I~sl~fspdg-~~Lasgs~d-~I~Vwd~~~~~~~~------~~~~~~s~i~~l~~--~dg~ 280 (819)
.|++. ...+..++.|.+.|+.++|.|.. ..|.++++| ...+||+...-... .+. ....+..+.+ ..+.
T Consensus 271 LDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~D 349 (364)
T KOG0290|consen 271 LDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPD 349 (364)
T ss_pred EEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCC
Confidence 99986 55788899999999999999974 556666666 48899997533211 111 2233444443 3567
Q ss_pred EEEEEEcC
Q 003445 281 LLGCSYNQ 288 (819)
Q Consensus 281 lLa~~~~D 288 (819)
.++++++.
T Consensus 350 wiai~~~k 357 (364)
T KOG0290|consen 350 WIAICFGK 357 (364)
T ss_pred EEEEEecC
Confidence 88887765
No 210
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=1.1e-11 Score=128.85 Aligned_cols=234 Identities=16% Similarity=0.277 Sum_probs=166.4
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEE-EEECC------CeEEEEECCC
Q 003445 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVA-AGAAS------GTIKLWDLEE 90 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~La-sgs~D------G~I~IWDl~s 90 (819)
....++|+. +...+++|.++| .+||+++.-+.......+.+.+.-+..--..++|+ +||.+ +.|.|||=..
T Consensus 7 ~~lsvs~NQ-D~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 7 KTLSVSFNQ-DHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred ceeEEEEcc-CCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence 344589987 556688887777 99999875443332222333322222211233333 34333 5899999777
Q ss_pred CeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC-CCeEEEEEecCC--CCeEEEEEcCCCCEEEE-EECCCe
Q 003445 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR-KKGCIHTYKGHT--RGVNAIRFTPDGRWVVS-GGEDNT 166 (819)
Q Consensus 91 ~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~-t~~~i~~~~~h~--~~I~sl~fspdg~~L~s-gs~Dg~ 166 (819)
.+++..+. ...+|.++.+.+ ..|++.- .+.|++|... +.+.++.+.... ....+++-+.+..+|+. |..-|.
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r--~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRR--DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred CcEEEEEE-eccceeeEEEcC--CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 77777776 678899999985 4555553 6889999987 455565554333 23444433334444443 445699
Q ss_pred EEEEECCCCeE--EEEEecCCCCeEEEEEeCCCCEEEEEECCCe-EEEEECCCCeEEEEeCCC--CCCeeEEEEeCCCCE
Q 003445 167 VKLWDLTAGKL--LHDFKCHEGQIQCIDFHPHEFLLATGSADRT-VKFWDLETFELIGSAGPE--TSGVRCLTFNPDGRT 241 (819)
Q Consensus 167 I~IwDl~t~~~--i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~-I~iwDl~~~~~l~~~~~~--~~~I~sl~fspdg~~ 241 (819)
|.|-|+...+. ...+..|.+.|.|++++-+|.++|++|..|+ |+|||..+|+.+..++-. ...|++++|+|++.+
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~ 240 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW 240 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE
Confidence 99999986655 4677899999999999999999999999997 899999999999988543 457999999999999
Q ss_pred EEEEECC-CEEEEEecC
Q 003445 242 LLCGLHE-SLKVFSWEP 257 (819)
Q Consensus 242 Lasgs~d-~I~Vwd~~~ 257 (819)
|+++++. +++||.+..
T Consensus 241 LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 241 LAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEcCCCeEEEEEeec
Confidence 9999887 599999875
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.54 E-value=7.3e-13 Score=156.34 Aligned_cols=258 Identities=18% Similarity=0.230 Sum_probs=189.8
Q ss_pred EECCCCceEEEecCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCC-------CeEEEEEcCCCCCeEEEEEecCCCE
Q 003445 44 WAIGKPNAILSLSGHTSGIDSVSFDSSE-VLVAAGAASGTIKLWDLEE-------AKIVRTLTGHRSNCISVDFHPFGEF 115 (819)
Q Consensus 44 Wdl~~~~~i~~l~~h~~~V~~l~fspdg-~~Lasgs~DG~I~IWDl~s-------~~~i~~l~~h~~~I~sl~fsp~g~~ 115 (819)
|+. .|..+..+..|...|..++.++.. .++++|+.||+|++||... .+...++......+.++.+.+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 553 578888888999999999987755 9999999999999999853 1233344445678999999999999
Q ss_pred EEEEECCCcEEEEECCCC--e-----EEEEEecCC-CC-eEEEEEcC-CCC-EEEEEECCCeEEEEECCCCeEEEEEe--
Q 003445 116 FASGSLDTNLKIWDIRKK--G-----CIHTYKGHT-RG-VNAIRFTP-DGR-WVVSGGEDNTVKLWDLTAGKLLHDFK-- 182 (819)
Q Consensus 116 Lasgs~Dg~I~IwDi~t~--~-----~i~~~~~h~-~~-I~sl~fsp-dg~-~L~sgs~Dg~I~IwDl~t~~~i~~~~-- 182 (819)
+|+++.||.|.+.++..- . +......+. +. +..-+|.. .+. .++.+..-+.|..||++........+
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999998752 1 111222222 22 33333333 333 78888889999999999876555444
Q ss_pred cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeC-CCCCCeeEEEEeCC---CCEEEEEEC---CCEEEEEe
Q 003445 183 CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG-PETSGVRCLTFNPD---GRTLLCGLH---ESLKVFSW 255 (819)
Q Consensus 183 ~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~-~~~~~I~sl~fspd---g~~Lasgs~---d~I~Vwd~ 255 (819)
...|.|++++.+|.+.++++|+..|.+.+||++-+.++..+. ++..+|+.+..+|- ....++++. +.+.+|++
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 346889999999999999999999999999999888887764 44577888887764 345554433 35999999
Q ss_pred cCCceeeeeecc-------c-------------cceeEeEecCCCEEEEEEcCCeEEEEEecCCcee
Q 003445 256 EPIRCHDAVDVG-------W-------------SRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIE 302 (819)
Q Consensus 256 ~~~~~~~~~~~~-------~-------------s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~ 302 (819)
.++.+..++-.. | ..+.+.....+.++.+|+.|..|+.||.......
T Consensus 1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 999887766333 0 0111222244688899999999999998876655
No 212
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=3.9e-12 Score=134.33 Aligned_cols=235 Identities=18% Similarity=0.279 Sum_probs=180.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCC--cEEEEECCCCeEE
Q 003445 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT--NLKIWDIRKKGCI 136 (819)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg--~I~IwDi~t~~~i 136 (819)
...+..+.|..+...|..|+.|| .++|..+..............|.-+-|+ ..++|..+.+. .++++++..+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence 34577778999999999999888 5788776544322222233345555565 45666665543 4999999988887
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec---CCCCeEEEEEeCCCCEEEEEE--CCCeEEE
Q 003445 137 HTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC---HEGQIQCIDFHPHEFLLATGS--ADRTVKF 211 (819)
Q Consensus 137 ~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~---h~~~I~sl~fspdg~~Lasgs--~Dg~I~i 211 (819)
..+. ....|.++.++. +.|+++-.+ .|+|||+++.+.++++.. +...+.++.+++.+.+||.-+ ..|.|.+
T Consensus 82 Ce~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 7766 567799999974 456666544 499999999999988764 334466666666677888643 3689999
Q ss_pred EECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCC--EEEEEecCCceeeeeecccc--ceeEeEe-cCCCEEEEEE
Q 003445 212 WDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHES--LKVFSWEPIRCHDAVDVGWS--RLSDLNV-HEGKLLGCSY 286 (819)
Q Consensus 212 wDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~--I~Vwd~~~~~~~~~~~~~~s--~i~~l~~-~dg~lLa~~~ 286 (819)
||+.+.+.+..+..|.+.+.+++|+++|.+||++++.+ |+||....++....+..+.. .+..+.+ +++++|++++
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS 237 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec
Confidence 99999999999999999999999999999999999886 99999999888877766554 3455555 6889999999
Q ss_pred cCCeEEEEEecCCc
Q 003445 287 NQSCVGVWVVDISR 300 (819)
Q Consensus 287 ~Dg~V~IW~ld~~~ 300 (819)
+.++|.||.++...
T Consensus 238 ~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 238 NTETVHIFKLEKVS 251 (391)
T ss_pred CCCeEEEEEecccc
Confidence 99999999998765
No 213
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=5.5e-13 Score=155.07 Aligned_cols=240 Identities=20% Similarity=0.380 Sum_probs=175.3
Q ss_pred CCEEEEEEee-CCCcEEEEEeCCCeEEEEEC-----CCCceEEEecC---C----CCCeEEEEEcCCCCEEEEEECCCeE
Q 003445 17 STVNCLKIGR-KSSRVLVTGGEDHKVNLWAI-----GKPNAILSLSG---H----TSGIDSVSFDSSEVLVAAGAASGTI 83 (819)
Q Consensus 17 ~~V~~lafsp-~~~~~Latgs~Dg~V~IWdl-----~~~~~i~~l~~---h----~~~V~~l~fspdg~~Lasgs~DG~I 83 (819)
..|+.+.+-. ++..++.+|+.||.|+||+- .+.+.+....+ + .+.=.-+.|.....+|+++|.-..|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence 4688888654 45668999999999999964 22233332221 1 1112446787766666676778999
Q ss_pred EEEECCCCeEEEEEcC-CCCCeEEEEEe-cCCCEEEEEECCCcEEEEECCCC---eEEEEEecCCCC--eEEEEEcCCCC
Q 003445 84 KLWDLEEAKIVRTLTG-HRSNCISVDFH-PFGEFFASGSLDTNLKIWDIRKK---GCIHTYKGHTRG--VNAIRFTPDGR 156 (819)
Q Consensus 84 ~IWDl~s~~~i~~l~~-h~~~I~sl~fs-p~g~~Lasgs~Dg~I~IwDi~t~---~~i~~~~~h~~~--I~sl~fspdg~ 156 (819)
+|||.+....+..+.. ....++++.-. +.|+.|++|..||.|++||.+.. ..+..++.|+.. |..+.+.+.|-
T Consensus 1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence 9999998888777653 33445555443 24789999999999999999854 356778889887 99999998665
Q ss_pred E-EEEEECCCeEEEEECCCCeEEE--EEecC---CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC-----
Q 003445 157 W-VVSGGEDNTVKLWDLTAGKLLH--DFKCH---EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP----- 225 (819)
Q Consensus 157 ~-L~sgs~Dg~I~IwDl~t~~~i~--~~~~h---~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~----- 225 (819)
- |++|+.+|.|++||++...... +...| .+.++++..|++...+|+|+. +.|+||++.. +.+..++.
T Consensus 1270 ~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFM 1347 (1387)
T ss_pred cceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccc
Confidence 4 9999999999999999742222 22223 235999999999999999998 9999999874 33333322
Q ss_pred --CCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCC
Q 003445 226 --ETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPI 258 (819)
Q Consensus 226 --~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~ 258 (819)
..+.+.|++|+|..-.+++|..| .+.||.-+..
T Consensus 1348 ~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 24567999999999999999877 4888876543
No 214
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=1.3e-13 Score=150.71 Aligned_cols=164 Identities=21% Similarity=0.374 Sum_probs=129.5
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEE--cCCCCEEEEEECCCeEEEEECCCCeE
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSF--DSSEVLVAAGAASGTIKLWDLEEAKI 93 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~f--spdg~~Lasgs~DG~I~IWDl~s~~~ 93 (819)
+..|+|++|-|.+..+++++..+|.+++||.. +....+...| .+++..+......+. .+..+
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~----------~~~~~t~p~~~~~k~~~~f~i~t~ksk------~~rNP 282 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE----------IVCGATAPSYQALKDGDQFAILTSKSK------KTRNP 282 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeecc----------ccccCCCCcccccCCCCeeEEeeeecc------ccCCc
Confidence 47899999999888888889999999999861 2222222333 234544443322111 11123
Q ss_pred EEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 94 VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT 173 (819)
Q Consensus 94 i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~ 173 (819)
+..+.--.+.|...+|+|||++||+.+.||.++|||..+.+.+..++..-+...|++|+|||++|++|++|.-|.||.+.
T Consensus 283 v~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 283 VARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred cceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 33333344588899999999999999999999999999998888888888899999999999999999999999999999
Q ss_pred CCeEEEEEecCCCCeEEEEEeC
Q 003445 174 AGKLLHDFKCHEGQIQCIDFHP 195 (819)
Q Consensus 174 t~~~i~~~~~h~~~I~sl~fsp 195 (819)
.++.+..-.+|.+.|..++|.|
T Consensus 363 erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 363 ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cceEEEeccccccceeeEeecc
Confidence 9999999999999999999985
No 215
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=8.4e-12 Score=143.19 Aligned_cols=203 Identities=14% Similarity=0.121 Sum_probs=148.7
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCE
Q 003445 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA---SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEF 115 (819)
Q Consensus 39 g~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~---DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~ 115 (819)
..|.+||.. +.....+..|...+.+..|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+....|+|+|+.
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 378888874 4555566778889999999999998887754 468999999888654 34456667788999999998
Q ss_pred EE-EEECCCc--EEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC-C--CeEEEEECCCCeEEEEEecCCCCeE
Q 003445 116 FA-SGSLDTN--LKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE-D--NTVKLWDLTAGKLLHDFKCHEGQIQ 189 (819)
Q Consensus 116 La-sgs~Dg~--I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~-D--g~I~IwDl~t~~~i~~~~~h~~~I~ 189 (819)
|+ +.+.++. |++||+.++.. ..+..+........|+|||++|+..+. + ..|++||+..++... +..+.+.+.
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~ 337 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYS 337 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCccc
Confidence 76 4455554 88889987765 445556666778999999999987764 3 368899987765433 333455567
Q ss_pred EEEEeCCCCEEEEEECC---CeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC
Q 003445 190 CIDFHPHEFLLATGSAD---RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (819)
Q Consensus 190 sl~fspdg~~Lasgs~D---g~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (819)
...|+|+|++|+..+.+ ..|.+||+..+.. ..+.. ...+....|+|||+.|+....
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEc
Confidence 78999999999887653 3688899866543 22322 234678899999999886543
No 216
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=9.3e-14 Score=151.82 Aligned_cols=210 Identities=24% Similarity=0.461 Sum_probs=161.3
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE-cCCCCCeEEEEEecC--CCEEEEEECCCcEEEE
Q 003445 52 ILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL-TGHRSNCISVDFHPF--GEFFASGSLDTNLKIW 128 (819)
Q Consensus 52 i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l-~~h~~~I~sl~fsp~--g~~Lasgs~Dg~I~Iw 128 (819)
...+.||++.|+|++|+.+|.+|++|+.|-.+.|||.-..+.+..+ .+|...|.++.|-|. .+.+++|..|..|++|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 3467899999999999999999999999999999999888887776 589999999999984 4689999999999999
Q ss_pred ECCC----------CeEEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeE-------EEE---EecCCCC
Q 003445 129 DIRK----------KGCIHTYKGHTRGVNAIRFTPDG-RWVVSGGEDNTVKLWDLTAGKL-------LHD---FKCHEGQ 187 (819)
Q Consensus 129 Di~t----------~~~i~~~~~h~~~I~sl~fspdg-~~L~sgs~Dg~I~IwDl~t~~~-------i~~---~~~h~~~ 187 (819)
|+.. ......+..|...|..++..|++ +.+.++++||+|+-+|++.... ... +...--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9984 23445567789999999999988 7899999999999999986321 000 1111234
Q ss_pred eEEEEEeCC-CCEEEEEECCCeEEEEECCC--------Ce----------EEEEeCC-C-----------CCCeeEEEEe
Q 003445 188 IQCIDFHPH-EFLLATGSADRTVKFWDLET--------FE----------LIGSAGP-E-----------TSGVRCLTFN 236 (819)
Q Consensus 188 I~sl~fspd-g~~Lasgs~Dg~I~iwDl~~--------~~----------~l~~~~~-~-----------~~~I~sl~fs 236 (819)
..|+..+|. ..+|++|+.|-..++||.+. +. ++..+.+ | ...++.+.|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 678899996 67999999999999999431 11 1211111 1 1125678899
Q ss_pred CCCCEEEEEECC-CEEEEEecCCcee
Q 003445 237 PDGRTLLCGLHE-SLKVFSWEPIRCH 261 (819)
Q Consensus 237 pdg~~Lasgs~d-~I~Vwd~~~~~~~ 261 (819)
|+|.-|++...+ .+.+|++...+..
T Consensus 283 pNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 283 PNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred CCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 999988877554 5888888765543
No 217
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=4.9e-12 Score=144.73 Aligned_cols=222 Identities=11% Similarity=0.091 Sum_probs=154.7
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEe--CCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE-ECCC--eEE
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGG--EDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG-AASG--TIK 84 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs--~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasg-s~DG--~I~ 84 (819)
+.+..+...+.+.+|+|++..++++.. .+..|.+|++.+++... +....+.+..+.|+|||+.|+.. +.+| .|+
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence 445556678999999996655544432 24579999998775433 22233345578999999988765 4444 599
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECC-C--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 003445 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD-T--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSG 161 (819)
Q Consensus 85 IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~D-g--~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sg 161 (819)
+||+.+++..+. ..+...+....|+|+|+.|+..+.+ + .|+++|+.++... .+..+........|+|||++|+..
T Consensus 271 ~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~ 348 (429)
T PRK03629 271 VMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMV 348 (429)
T ss_pred EEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEE
Confidence 999998876544 3345567889999999988877754 3 4556677766543 333344456678999999999876
Q ss_pred ECC---CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCe---EEEEECCCCeEEEEeCCCCCCeeEEEE
Q 003445 162 GED---NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRT---VKFWDLETFELIGSAGPETSGVRCLTF 235 (819)
Q Consensus 162 s~D---g~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~---I~iwDl~~~~~l~~~~~~~~~I~sl~f 235 (819)
+.+ ..|.+||+.+++... +.. ........|+|||.+|+.++.++. +.++++. +.....+..+.+.+...+|
T Consensus 349 ~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~W 425 (429)
T PRK03629 349 SSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAW 425 (429)
T ss_pred EccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCccc
Confidence 644 358899998886443 332 222346789999999999987764 7778874 5555566667777888888
Q ss_pred eC
Q 003445 236 NP 237 (819)
Q Consensus 236 sp 237 (819)
+|
T Consensus 426 sp 427 (429)
T PRK03629 426 SP 427 (429)
T ss_pred CC
Confidence 87
No 218
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=3.9e-12 Score=140.28 Aligned_cols=284 Identities=11% Similarity=0.158 Sum_probs=207.0
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
.+|.| .|...-+.+..+|++..++++|..--.|++||+.+-..-..-.-....|.-.-.+.|-..++.-..|.+|.+..
T Consensus 44 LiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa 122 (703)
T KOG2321|consen 44 LIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA 122 (703)
T ss_pred HHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehh
Confidence 34555 37778899999998888899999999999999865544333222234555555566665555556677776554
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003445 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTV 167 (819)
Q Consensus 88 l~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I 167 (819)
-. |... .+. -......++++.-..-|.+++....|+-++++.|..+..+....+.++++..++-..+|++|+.+|.|
T Consensus 123 k~-G~hy-~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~V 199 (703)
T KOG2321|consen 123 KY-GRHY-RTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVV 199 (703)
T ss_pred hc-Ceee-eee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceE
Confidence 22 2211 111 12234566776555556666667789999999999999999888999999999998899999999999
Q ss_pred EEEECCCCeEEEEEec------CCC-----CeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe-CCCCCCeeEEEE
Q 003445 168 KLWDLTAGKLLHDFKC------HEG-----QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA-GPETSGVRCLTF 235 (819)
Q Consensus 168 ~IwDl~t~~~i~~~~~------h~~-----~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~-~~~~~~I~sl~f 235 (819)
-.||.+....+..+.. |.+ .|+++.|+.+|-.+++|+.+|.+.|||++..+++..- ....-+|..+.|
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~ 279 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDW 279 (703)
T ss_pred EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecc
Confidence 9999998765555442 323 3999999999999999999999999999998877554 334568899999
Q ss_pred eCC--CCEEEEEECCCEEEEEecCCceeeeeeccccceeEe-EecCCCEEEEEEcCCeEEEEEe
Q 003445 236 NPD--GRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDL-NVHEGKLLGCSYNQSCVGVWVV 296 (819)
Q Consensus 236 spd--g~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~s~i~~l-~~~dg~lLa~~~~Dg~V~IW~l 296 (819)
.+. +..+++....-++|||-.+++....+..... +.++ .++++.++.++-.++.+..|-+
T Consensus 280 ~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~-lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 280 QDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSD-LNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred cccCCCceEEecchHHhhhcccccCCceeeccccCC-cCceeeecCCceEEEecCCCcceeEEc
Confidence 765 4556665555699999999888776654444 4444 4578888888888776665543
No 219
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=2.5e-12 Score=136.64 Aligned_cols=221 Identities=21% Similarity=0.348 Sum_probs=169.4
Q ss_pred eccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc----eEEEecCCCCCeEEEEEcCCCC-EEEEEECC--CeEEE
Q 003445 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN----AILSLSGHTSGIDSVSFDSSEV-LVAAGAAS--GTIKL 85 (819)
Q Consensus 13 ~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~----~i~~l~~h~~~V~~l~fspdg~-~Lasgs~D--G~I~I 85 (819)
.....+|..++.. ++ .|++|-.+|.+.+|....+. .+..+..+ .++..+.-++... ++++|+.. ..+.+
T Consensus 102 ~l~~~~I~gl~~~--dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lki 177 (412)
T KOG3881|consen 102 SLGTKSIKGLKLA--DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKI 177 (412)
T ss_pred ccccccccchhhc--CC-EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceee
Confidence 3344556666654 33 58888999999999986332 23333323 4566777666544 55668888 89999
Q ss_pred EECCCCeEEEEEcCCC---------CCeEEEEEecC--CCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcC
Q 003445 86 WDLEEAKIVRTLTGHR---------SNCISVDFHPF--GEFFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTP 153 (819)
Q Consensus 86 WDl~s~~~i~~l~~h~---------~~I~sl~fsp~--g~~Lasgs~Dg~I~IwDi~t~-~~i~~~~~h~~~I~sl~fsp 153 (819)
||++..+.+..-+.-. -.++++.|-+. ...|++++.-+.+++||.+.+ +++..+.-...+++++...|
T Consensus 178 wdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p 257 (412)
T KOG3881|consen 178 WDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP 257 (412)
T ss_pred eecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC
Confidence 9999886665543211 24567888876 678999999999999999865 46777777788999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEE-EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeE
Q 003445 154 DGRWVVSGGEDNTVKLWDLTAGKLLHD-FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRC 232 (819)
Q Consensus 154 dg~~L~sgs~Dg~I~IwDl~t~~~i~~-~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~s 232 (819)
+|+++++|...|.+..||++.++.... +++..+.|.++..||.+.+|++++-|+.|+|+|+++.+++..... ...+++
T Consensus 258 ~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~ 336 (412)
T KOG3881|consen 258 SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTF 336 (412)
T ss_pred CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccE
Confidence 999999999999999999999998877 788899999999999999999999999999999999776654322 233455
Q ss_pred EEEeCC
Q 003445 233 LTFNPD 238 (819)
Q Consensus 233 l~fspd 238 (819)
+.+.++
T Consensus 337 il~~~~ 342 (412)
T KOG3881|consen 337 ILLRDD 342 (412)
T ss_pred EEecCC
Confidence 555443
No 220
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.8e-11 Score=140.34 Aligned_cols=203 Identities=14% Similarity=0.101 Sum_probs=145.5
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCE
Q 003445 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEF 115 (819)
Q Consensus 39 g~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D---G~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~ 115 (819)
..|.+||.. +.....+..+...+.+..|+||++.|+..+.+ ..|.+||+.+++... +..+.+...+..|+|+|+.
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 468899975 44445566677889999999999998887643 479999998876543 3334445567899999997
Q ss_pred EEE-EECCC--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC-CC--eEEEEECCCCeEEEEEecCCCCeE
Q 003445 116 FAS-GSLDT--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE-DN--TVKLWDLTAGKLLHDFKCHEGQIQ 189 (819)
Q Consensus 116 Las-gs~Dg--~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~-Dg--~I~IwDl~t~~~i~~~~~h~~~I~ 189 (819)
|+. .+.+| .|++||+.+++.. .+..+.......+|+|||++|+.++. +| .|+++|+.+++... +..+.....
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~ 339 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA 339 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence 764 45555 5999999887654 44445555568899999999887764 34 47778887765433 222333455
Q ss_pred EEEEeCCCCEEEEEECCC---eEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC
Q 003445 190 CIDFHPHEFLLATGSADR---TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (819)
Q Consensus 190 sl~fspdg~~Lasgs~Dg---~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (819)
..+|+|+|++|+..+.++ .|.+||+.+++.. .+. +........|+|||++|+..+.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEe
Confidence 789999999998876443 6999999887755 332 2223456799999999887654
No 221
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.47 E-value=8.1e-14 Score=158.40 Aligned_cols=252 Identities=20% Similarity=0.325 Sum_probs=193.1
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC
Q 003445 52 ILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR 131 (819)
Q Consensus 52 i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~ 131 (819)
+..+.+|-..|+|+.|...|.++++|+.|..++||..+++.++....||.+.|+.++.+.+..++++++.|..|++|-+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 44566899999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred CCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE---Ee-cCCCCeEEEEEeCCCCEEEEEECCC
Q 003445 132 KKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHD---FK-CHEGQIQCIDFHPHEFLLATGSADR 207 (819)
Q Consensus 132 t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~---~~-~h~~~I~sl~fspdg~~Lasgs~Dg 207 (819)
.+.++..+.+|++.|++++|+|-. +.+.||++++||.+-.-.+.. .+ .....+.++.|..++.-+++|+.|+
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence 999999999999999999999964 678899999999982111111 01 1234577788888899999999999
Q ss_pred eEEEEECCCCeEEEEeCCCCCCeeEEEEeCCC-CEEEEEECC-CEEEEEecCCceeeeeeccccceeEeEec--CCCEEE
Q 003445 208 TVKFWDLETFELIGSAGPETSGVRCLTFNPDG-RTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVH--EGKLLG 283 (819)
Q Consensus 208 ~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg-~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~--dg~lLa 283 (819)
.-..|.+.... .+...+.-+.++.+- .+.+++-.+ .+.+|++-++....+...+......+.+| +..+..
T Consensus 339 ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~m 412 (1113)
T KOG0644|consen 339 EARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAM 412 (1113)
T ss_pred ccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhh
Confidence 98888765321 111112222222222 233333333 57888888888788887777777888775 456666
Q ss_pred EEEcCCeEEEEEecCCc-eeeeeecccceec
Q 003445 284 CSYNQSCVGVWVVDISR-IEPYTIGSVTRVN 313 (819)
Q Consensus 284 ~~~~Dg~V~IW~ld~~~-~~p~~~~~~~~~n 313 (819)
.++.||...|||+--+- ++-|..++...++
T Consensus 413 sag~dgst~iwdi~eg~pik~y~~gh~kl~d 443 (1113)
T KOG0644|consen 413 SAGYDGSTIIWDIWEGIPIKHYFIGHGKLVD 443 (1113)
T ss_pred hccCCCceEeeecccCCcceeeecccceeec
Confidence 89999999999976554 4445555444333
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=3.2e-11 Score=138.01 Aligned_cols=211 Identities=13% Similarity=0.105 Sum_probs=147.0
Q ss_pred eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEE
Q 003445 40 KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA---SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFF 116 (819)
Q Consensus 40 ~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~---DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~L 116 (819)
.|.+||...... ..+..+...+....|+|||+.|+..+. +..|.+||+.+++.... ......+..+.|+|+|+.|
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEE
Confidence 688888765443 334456778999999999998886543 45799999988864332 2233345568999999988
Q ss_pred EEE-ECCC--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEEecCCCCeEE
Q 003445 117 ASG-SLDT--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED-N--TVKLWDLTAGKLLHDFKCHEGQIQC 190 (819)
Q Consensus 117 asg-s~Dg--~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~D-g--~I~IwDl~t~~~i~~~~~h~~~I~s 190 (819)
+.. +.+| .|++||+.++..... ..+...+....|+|||+.|+..+.+ + .|+++|+.+++.. .+..+......
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~ 335 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD 335 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccC
Confidence 765 4444 599999988775543 3344567889999999999877764 3 5666677766543 33333445667
Q ss_pred EEEeCCCCEEEEEECC---CeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCC----EEEEEec
Q 003445 191 IDFHPHEFLLATGSAD---RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHES----LKVFSWE 256 (819)
Q Consensus 191 l~fspdg~~Lasgs~D---g~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~----I~Vwd~~ 256 (819)
..|+|||++|+..+.+ ..|++||+.+++....... .......|+|||+.|+.++.++ +.+++.+
T Consensus 336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 8999999999887644 3588999988865432222 2235678999999999876552 4455553
No 223
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.47 E-value=3.2e-11 Score=125.42 Aligned_cols=174 Identities=20% Similarity=0.352 Sum_probs=138.2
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEEEEEcC--CCCCeEEEEEecCCCE
Q 003445 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE-EAKIVRTLTG--HRSNCISVDFHPFGEF 115 (819)
Q Consensus 39 g~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~-s~~~i~~l~~--h~~~I~sl~fsp~g~~ 115 (819)
.+|.|||=....++.++. ...+|.++.+.++. |++. ..+.|.||... ..+.++.+.. ......+++-+.+..+
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 579999977778888777 67899999998764 4443 37899999987 4455555542 2233444444444445
Q ss_pred EEE-EECCCcEEEEECCCCeE--EEEEecCCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCCCeEEEEEec--CCCCeE
Q 003445 116 FAS-GSLDTNLKIWDIRKKGC--IHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT-VKLWDLTAGKLLHDFKC--HEGQIQ 189 (819)
Q Consensus 116 Las-gs~Dg~I~IwDi~t~~~--i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~-I~IwDl~t~~~i~~~~~--h~~~I~ 189 (819)
||. |-.-|.|.|-|+...+. -..+.+|...|.|++.+-+|..+|+++..|+ |+|||..+|+.+.+++- ....|+
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 555 44579999999986655 4678899999999999999999999999997 89999999999999974 345699
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCC
Q 003445 190 CIDFHPHEFLLATGSADRTVKFWDLET 216 (819)
Q Consensus 190 sl~fspdg~~Lasgs~Dg~I~iwDl~~ 216 (819)
+|+|+|++.+||++|..|+|+||.++.
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 999999999999999999999998865
No 224
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.47 E-value=1.1e-10 Score=130.58 Aligned_cols=296 Identities=15% Similarity=0.202 Sum_probs=190.6
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCeEEE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA-ASGTIKL 85 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs-~DG~I~I 85 (819)
..+.++......-..+.|+| +++++++++.||.|.++|+.+.+.+.++.. .....++++++||+++++++ ..+.+.+
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v 104 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSV 104 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEE
T ss_pred eEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeE
Confidence 34556665544444577888 677788888999999999999999999885 34578899999999988775 5899999
Q ss_pred EECCCCeEEEEEcCC-------CCCeEEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEE-EEecCCCCeEEEEEcCCCC
Q 003445 86 WDLEEAKIVRTLTGH-------RSNCISVDFHPFGEFFASGSL-DTNLKIWDIRKKGCIH-TYKGHTRGVNAIRFTPDGR 156 (819)
Q Consensus 86 WDl~s~~~i~~l~~h-------~~~I~sl~fsp~g~~Lasgs~-Dg~I~IwDi~t~~~i~-~~~~h~~~I~sl~fspdg~ 156 (819)
+|.++.+.++.+... ...+.++..+|....++..-. .+.|.+.|....+.+. .............|+|+++
T Consensus 105 ~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgr 184 (369)
T PF02239_consen 105 IDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGR 184 (369)
T ss_dssp EETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSS
T ss_pred eccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccc
Confidence 999999998887532 346778888888886666555 4888888987654332 2222445678899999999
Q ss_pred EEEEE-ECCCeEEEEECCCCeEEEEEec----CCCCeEEEEEeCCC----------CEEEEEECCCeEEEEECCCCeEEE
Q 003445 157 WVVSG-GEDNTVKLWDLTAGKLLHDFKC----HEGQIQCIDFHPHE----------FLLATGSADRTVKFWDLETFELIG 221 (819)
Q Consensus 157 ~L~sg-s~Dg~I~IwDl~t~~~i~~~~~----h~~~I~sl~fspdg----------~~Lasgs~Dg~I~iwDl~~~~~l~ 221 (819)
+++.+ ..+..|-++|..+++.+..+.. |..++..+ .||.. ...++.-....+.+||..+++.+.
T Consensus 185 y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~ 263 (369)
T PF02239_consen 185 YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVK 263 (369)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEE
T ss_pred eeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEE
Confidence 87765 4567899999999988776642 33444433 23332 222122223456679999999999
Q ss_pred EeCCCCCCeeEEEEeCCCCEEEEE---EC--CCEEEEEecCCceeeeeecccc-ceeEeEe-cCCCEEEE-EEcCC-eEE
Q 003445 222 SAGPETSGVRCLTFNPDGRTLLCG---LH--ESLKVFSWEPIRCHDAVDVGWS-RLSDLNV-HEGKLLGC-SYNQS-CVG 292 (819)
Q Consensus 222 ~~~~~~~~I~sl~fspdg~~Lasg---s~--d~I~Vwd~~~~~~~~~~~~~~s-~i~~l~~-~dg~lLa~-~~~Dg-~V~ 292 (819)
.+.....+ ..+..+|+++++.+. .. +.|.|+|.++.+....+..... .+..+.+ .+|+.+-. .+..+ .|.
T Consensus 264 ~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~ 342 (369)
T PF02239_consen 264 TIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIV 342 (369)
T ss_dssp EEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEE
T ss_pred EEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEE
Confidence 99887777 888889999999988 33 3699999999876655543332 2333333 77875544 34444 799
Q ss_pred EEEecCCceeeeee
Q 003445 293 VWVVDISRIEPYTI 306 (819)
Q Consensus 293 IW~ld~~~~~p~~~ 306 (819)
|||..+.+......
T Consensus 343 v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 343 VYDAKTLKEKKRIP 356 (369)
T ss_dssp EEETTTTEEEEEEE
T ss_pred EEECCCcEEEEEEE
Confidence 99999988775544
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.46 E-value=1.3e-11 Score=128.16 Aligned_cols=269 Identities=18% Similarity=0.326 Sum_probs=187.3
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEE
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVR 95 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWDl~s~~~i~ 95 (819)
+.|.-+.|..+...+|.....|+.|.+|++...+....+.....++..+.|+|||+ +|.+...+-.|.+|.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 46777888887777788888999999999999999999998889999999999996 55666778999999998876543
Q ss_pred EEcCCCCCeEEEEEecCCCEEEEEECC------------------------------------CcEEEEECCCCeEEEEE
Q 003445 96 TLTGHRSNCISVDFHPFGEFFASGSLD------------------------------------TNLKIWDIRKKGCIHTY 139 (819)
Q Consensus 96 ~l~~h~~~I~sl~fsp~g~~Lasgs~D------------------------------------g~I~IwDi~t~~~i~~~ 139 (819)
+...+..+..++|+|+|++.+..+.- ..+.+||---.-.+..+
T Consensus 129 -~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY 207 (447)
T KOG4497|consen 129 -LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY 207 (447)
T ss_pred -ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee
Confidence 33344567889999999988877642 12344442211112222
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE------------------------------------------
Q 003445 140 KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL------------------------------------------ 177 (819)
Q Consensus 140 ~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~------------------------------------------ 177 (819)
. ..-++..+.|+|.+++|+.|+.|+.+++.+--+.+.
T Consensus 208 e-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 208 E-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred e-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 2 234688999999999999999999998865422110
Q ss_pred ------------------EEEEe------cCCCCeEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeEEEEeCCCCCCee
Q 003445 178 ------------------LHDFK------CHEGQIQCIDFHPHEFLLATGSA--DRTVKFWDLETFELIGSAGPETSGVR 231 (819)
Q Consensus 178 ------------------i~~~~------~h~~~I~sl~fspdg~~Lasgs~--Dg~I~iwDl~~~~~l~~~~~~~~~I~ 231 (819)
++.++ .....+.-++|++|..++++-.. -+.+.+||++..+....+. ...+|+
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~pir 365 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIR 365 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hcccee
Confidence 00111 11123667899999999998753 2579999999877554443 346899
Q ss_pred EEEEeCCCCEEEEEECCCEEEEEecCCce--eeeeeccccceeEeEe-cCCCEEEEEEcCCe
Q 003445 232 CLTFNPDGRTLLCGLHESLKVFSWEPIRC--HDAVDVGWSRLSDLNV-HEGKLLGCSYNQSC 290 (819)
Q Consensus 232 sl~fspdg~~Lasgs~d~I~Vwd~~~~~~--~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~ 290 (819)
...|+|....|+.+..+ .++|-|.+.-+ ..+-.-+ -.+..+.+ .+|..++..+.|..
T Consensus 366 af~WdP~~prL~vctg~-srLY~W~psg~~~V~vP~~G-F~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 366 AFEWDPGRPRLVVCTGK-SRLYFWAPSGPRVVGVPKKG-FNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EEEeCCCCceEEEEcCC-ceEEEEcCCCceEEecCCCC-ceeeeEEecCCCcEEEEEcCCce
Confidence 99999998888877544 45666655333 2222222 33455555 46777777777643
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.1e-11 Score=142.13 Aligned_cols=222 Identities=12% Similarity=0.090 Sum_probs=153.3
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEEEeC---CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEE-EEECCC--e
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGE---DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVA-AGAASG--T 82 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Latgs~---Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~La-sgs~DG--~ 82 (819)
.+.+..|...+.+.+|+|++. .|+..+. +..|++||+.+++... +..+.+...++.|+|||+.|+ +.+.+| .
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred ceEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 345666777899999999555 4554442 3469999998776543 333445556889999998775 445555 5
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEEC-CCc--EEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 003445 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL-DTN--LKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV 159 (819)
Q Consensus 83 I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~-Dg~--I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~ 159 (819)
|++||+.+++.. .+..+.......+|+|+|++|+.++. +|. |+++|+.+++... +..+.......+|+|||++|+
T Consensus 274 Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 274 IYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIA 351 (433)
T ss_pred EEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEE
Confidence 999999888754 45555555667899999998887764 444 7777877765433 222334455789999999998
Q ss_pred EEECCC---eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC---CeEEEEECCCCeEEEEeCCCCCCeeEE
Q 003445 160 SGGEDN---TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD---RTVKFWDLETFELIGSAGPETSGVRCL 233 (819)
Q Consensus 160 sgs~Dg---~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~D---g~I~iwDl~~~~~l~~~~~~~~~I~sl 233 (819)
..+.++ .|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|+++|+.. .....+..+.+.+...
T Consensus 352 ~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g~~~~p 428 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADGEVREP 428 (433)
T ss_pred EEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCCCCCCCC
Confidence 765443 6999999887754 333 22344567899999988877653 4688888864 3444555455667777
Q ss_pred EEeC
Q 003445 234 TFNP 237 (819)
Q Consensus 234 ~fsp 237 (819)
+|+|
T Consensus 429 ~wsp 432 (433)
T PRK04922 429 AWSP 432 (433)
T ss_pred ccCC
Confidence 7876
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=8.9e-12 Score=142.57 Aligned_cols=223 Identities=12% Similarity=0.090 Sum_probs=149.3
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCC--CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEE-EEECCCeEEEE
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGED--HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVA-AGAASGTIKLW 86 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~D--g~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~La-sgs~DG~I~IW 86 (819)
+.+..+...+.+.+|+|++..++++...+ ..|.+||+.+++... +....+.+.+..|+|||+.|+ +.+.+|...||
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence 44566788899999999555444444333 469999998876543 333445667899999998776 45677776666
Q ss_pred E--CCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEEC-CCcEEEE--ECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 003445 87 D--LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL-DTNLKIW--DIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSG 161 (819)
Q Consensus 87 D--l~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~-Dg~I~Iw--Di~t~~~i~~~~~h~~~I~sl~fspdg~~L~sg 161 (819)
. +..+. ...+..+........|+|+|++|+..+. +|...+| ++.++.... +..+........|+|||++|+..
T Consensus 268 ~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 268 TVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGKLLAYI 345 (427)
T ss_pred EEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCCEEEEE
Confidence 5 44444 4455555555677899999998887664 4555555 444544322 22223334567899999999887
Q ss_pred ECCC---eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC---eEEEEECCCCeEEEEeCCCCCCeeEEEE
Q 003445 162 GEDN---TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR---TVKFWDLETFELIGSAGPETSGVRCLTF 235 (819)
Q Consensus 162 s~Dg---~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg---~I~iwDl~~~~~l~~~~~~~~~I~sl~f 235 (819)
+.++ .|.+||+.+++...... ........|+|||+.|+.++.++ .+++.++ ++.....+..+.+.+...+|
T Consensus 346 s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~w 422 (427)
T PRK02889 346 SRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSW 422 (427)
T ss_pred EccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCcc
Confidence 7654 69999998886543322 23346789999999988877544 4666676 35555555555566777788
Q ss_pred eCC
Q 003445 236 NPD 238 (819)
Q Consensus 236 spd 238 (819)
+|-
T Consensus 423 sp~ 425 (427)
T PRK02889 423 GPF 425 (427)
T ss_pred CCC
Confidence 763
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=2.2e-11 Score=139.31 Aligned_cols=204 Identities=16% Similarity=0.170 Sum_probs=140.9
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCE
Q 003445 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEF 115 (819)
Q Consensus 39 g~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D---G~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~ 115 (819)
..|.+||. ++.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +........+..|+|+|+.
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 45777776 355555566678889999999999988877643 469999999887643 3334455678999999998
Q ss_pred EEE-EECCCcEEEE--ECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC-CCeEEEE--ECCCCeEEEEEecCCCCeE
Q 003445 116 FAS-GSLDTNLKIW--DIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE-DNTVKLW--DLTAGKLLHDFKCHEGQIQ 189 (819)
Q Consensus 116 Las-gs~Dg~I~Iw--Di~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~-Dg~I~Iw--Dl~t~~~i~~~~~h~~~I~ 189 (819)
|+. .+.+|...|| |+..+. ...+..+........|+|||++|+..+. +|...+| |+.+++... +..+.....
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~ 331 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNT 331 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcC
Confidence 764 5667765555 555444 4455555555677899999999887664 3554555 555554322 222223345
Q ss_pred EEEEeCCCCEEEEEECCC---eEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC
Q 003445 190 CIDFHPHEFLLATGSADR---TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (819)
Q Consensus 190 sl~fspdg~~Lasgs~Dg---~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (819)
...|+|+|++|+..+.++ .|++||+.+++....... .......|+|||+.|+.+..+
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEec
Confidence 678999999998877654 699999988775433222 334678999999999877654
No 229
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=3.1e-11 Score=138.53 Aligned_cols=223 Identities=11% Similarity=0.037 Sum_probs=155.4
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEe--CCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEE-EEECCCe--
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGG--EDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVA-AGAASGT-- 82 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs--~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~La-sgs~DG~-- 82 (819)
..+.+..|...+.+.+|+|++..++++.. .+..|++||+.+++.. .+..+.+.+....|+|||+.|+ +.+.+|.
T Consensus 193 ~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 271 (435)
T PRK05137 193 NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTD 271 (435)
T ss_pred CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCce
Confidence 34567778889999999996554444433 2468999999877653 4455667788999999998765 4455554
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEEC-CC--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 003445 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL-DT--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV 159 (819)
Q Consensus 83 I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~-Dg--~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~ 159 (819)
|++||+.+++.. .+..+........|+|+|+.|+..+. +| .|++||+..+... .+..+...+....|+|||++|+
T Consensus 272 Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 272 IYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred EEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEE
Confidence 778898887654 45556666778899999999887764 33 6888998766543 3333445567789999999998
Q ss_pred EEECC---CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC------CeEEEEECCCCeEEEEeCCCCCCe
Q 003445 160 SGGED---NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD------RTVKFWDLETFELIGSAGPETSGV 230 (819)
Q Consensus 160 sgs~D---g~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~D------g~I~iwDl~~~~~l~~~~~~~~~I 230 (819)
....+ ..|.+||+..+.. ..+. ....+....|+|||++|+..+.+ ..++++|+..+.. ..+. ..+.+
T Consensus 350 ~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~ 425 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDA 425 (435)
T ss_pred EEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCc
Confidence 77643 3688899865543 3333 23346788999999988776543 3688888876554 3333 23345
Q ss_pred eEEEEeC
Q 003445 231 RCLTFNP 237 (819)
Q Consensus 231 ~sl~fsp 237 (819)
...+|+|
T Consensus 426 ~~p~Wsp 432 (435)
T PRK05137 426 SDPAWSP 432 (435)
T ss_pred cCcccCC
Confidence 6667765
No 230
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.42 E-value=1.9e-11 Score=124.53 Aligned_cols=149 Identities=16% Similarity=0.355 Sum_probs=110.8
Q ss_pred EEEEEecCCCEEEEEEC----------CCcEEEEECCC-CeEEEEEec-CCCCeEEEEEcCCCCEEEEE--ECCCeEEEE
Q 003445 105 ISVDFHPFGEFFASGSL----------DTNLKIWDIRK-KGCIHTYKG-HTRGVNAIRFTPDGRWVVSG--GEDNTVKLW 170 (819)
Q Consensus 105 ~sl~fsp~g~~Lasgs~----------Dg~I~IwDi~t-~~~i~~~~~-h~~~I~sl~fspdg~~L~sg--s~Dg~I~Iw 170 (819)
..+.|+++|++|++-.. -|...+|.++. ...+..+.- ..++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999988765443 13344554432 223334432 34579999999999987654 456799999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC---CCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE-
Q 003445 171 DLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA---DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL- 246 (819)
Q Consensus 171 Dl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~---Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs- 246 (819)
|++ ++.+..+. ...++.+.|+|+|++|++++. .|.|.+||+++.+.+...... .+..++|+|||++|+++.
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEEEe
Confidence 997 66666664 567889999999999999875 467999999999988776543 478999999999999774
Q ss_pred ------CCCEEEEEecCC
Q 003445 247 ------HESLKVFSWEPI 258 (819)
Q Consensus 247 ------~d~I~Vwd~~~~ 258 (819)
+++++||++...
T Consensus 164 ~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred ccceeccccEEEEEecCe
Confidence 457999998644
No 231
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.41 E-value=2.5e-11 Score=123.66 Aligned_cols=155 Identities=23% Similarity=0.441 Sum_probs=115.5
Q ss_pred EEEEEcCCCCEEEEEEC----------CCeEEEEECCC-CeEEEEEcC-CCCCeEEEEEecCCCEEEEE--ECCCcEEEE
Q 003445 63 DSVSFDSSEVLVAAGAA----------SGTIKLWDLEE-AKIVRTLTG-HRSNCISVDFHPFGEFFASG--SLDTNLKIW 128 (819)
Q Consensus 63 ~~l~fspdg~~Lasgs~----------DG~I~IWDl~s-~~~i~~l~~-h~~~I~sl~fsp~g~~Lasg--s~Dg~I~Iw 128 (819)
..+.|+++|.+|++-.. -|...+|.++. +..+..+.- ..++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45788898887665433 24455666532 233444432 34579999999999987654 457799999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC
Q 003445 129 DIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED---NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA 205 (819)
Q Consensus 129 Di~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~D---g~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~ 205 (819)
|++ ++.+..+. ...+..+.|+|+|++|++|+.+ |.|.+||.++.+.+..+. | ..++.++|+|+|++|+++..
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 996 66666664 4667899999999999998754 679999999998888776 3 34789999999999999874
Q ss_pred ------CCeEEEEECCCCeEEEEe
Q 003445 206 ------DRTVKFWDLETFELIGSA 223 (819)
Q Consensus 206 ------Dg~I~iwDl~~~~~l~~~ 223 (819)
|+.++||+.. |+++...
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred ccceeccccEEEEEec-CeEeEec
Confidence 7889999985 6665543
No 232
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=3e-11 Score=128.52 Aligned_cols=243 Identities=17% Similarity=0.240 Sum_probs=183.1
Q ss_pred CCCEEEEEEeeCCCcEEEEEe-CCCeEEEEECCCCceEEEe------cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003445 16 SSTVNCLKIGRKSSRVLVTGG-EDHKVNLWAIGKPNAILSL------SGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs-~Dg~V~IWdl~~~~~i~~l------~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (819)
...|..++|.-++..-+..+. .|..+..+.+........+ .....+|..++.. ++ .|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEec
Confidence 346777788764443344443 6666777766655544332 2345566666543 33 5667788999999998
Q ss_pred CCCe----EEEEEcCCCCCeEEEEEecCCCE-EEEEECC--CcEEEEECCCCeEEEEEecC---------CCCeEEEEEc
Q 003445 89 EEAK----IVRTLTGHRSNCISVDFHPFGEF-FASGSLD--TNLKIWDIRKKGCIHTYKGH---------TRGVNAIRFT 152 (819)
Q Consensus 89 ~s~~----~i~~l~~h~~~I~sl~fsp~g~~-Lasgs~D--g~I~IwDi~t~~~i~~~~~h---------~~~I~sl~fs 152 (819)
+.+. .+..+..+ ..+..+.-++...+ +++|+.. ..+.|||+.+.+.++.-+.- .-.++.+.|.
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 8432 33334433 45667777776655 5558888 88999999988666654432 1246788998
Q ss_pred CC--CCEEEEEECCCeEEEEECCCC-eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEE-eCCCCC
Q 003445 153 PD--GRWVVSGGEDNTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS-AGPETS 228 (819)
Q Consensus 153 pd--g~~L~sgs~Dg~I~IwDl~t~-~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~-~~~~~~ 228 (819)
+. ...|++++.-+.+++||.+.+ +++.+|.....+|+++...|.|+++++|..-|.+..||++.++.+.. +++..+
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG 291 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG 291 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC
Confidence 87 789999999999999999875 57888888889999999999999999999999999999999999887 888899
Q ss_pred CeeEEEEeCCCCEEEEEECC-CEEEEEecCCcee
Q 003445 229 GVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCH 261 (819)
Q Consensus 229 ~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~ 261 (819)
.|+++..+|.+++|++++-| .++|||.++.+.+
T Consensus 292 sirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 292 SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred CcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 99999999999999977665 6999999985544
No 233
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.39 E-value=3.9e-09 Score=117.43 Aligned_cols=272 Identities=15% Similarity=0.254 Sum_probs=178.5
Q ss_pred EEEEeCC----CeEEEEEC--CCCceE--EEecCCCCCeEEEEEcCCCCEEEEEEC----CCeEEEEECCCC--e--EEE
Q 003445 32 LVTGGED----HKVNLWAI--GKPNAI--LSLSGHTSGIDSVSFDSSEVLVAAGAA----SGTIKLWDLEEA--K--IVR 95 (819)
Q Consensus 32 Latgs~D----g~V~IWdl--~~~~~i--~~l~~h~~~V~~l~fspdg~~Lasgs~----DG~I~IWDl~s~--~--~i~ 95 (819)
+++|+.. +.|.+|++ .+++.. ..+. .......++++|++++|++... +|.|..|++... + .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 3455554 68999988 333332 2222 3445677999999999999877 579999998764 3 333
Q ss_pred EEcCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEECCCC-eEEEE---Ee----------cCCCCeEEEEEcCCCCEEEE
Q 003445 96 TLTGHRSNCISVDFHPFGEFFASGSL-DTNLKIWDIRKK-GCIHT---YK----------GHTRGVNAIRFTPDGRWVVS 160 (819)
Q Consensus 96 ~l~~h~~~I~sl~fsp~g~~Lasgs~-Dg~I~IwDi~t~-~~i~~---~~----------~h~~~I~sl~fspdg~~L~s 160 (819)
........-..++++|++++|+++.. +|.|.+|++... ..... +. .......++.|+|+|+++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 33323445568999999999988874 899999999873 32222 21 12345789999999999888
Q ss_pred EEC-CCeEEEEECCCCe--E--EEEEe-cCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECC--CCe--EEEEeCCC---
Q 003445 161 GGE-DNTVKLWDLTAGK--L--LHDFK-CHEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLE--TFE--LIGSAGPE--- 226 (819)
Q Consensus 161 gs~-Dg~I~IwDl~t~~--~--i~~~~-~h~~~I~sl~fspdg~~Lasgs-~Dg~I~iwDl~--~~~--~l~~~~~~--- 226 (819)
... ...|.+|++.... . ...+. ........+.|+|+++++++.. .++.|.+|++. ++. .+..+...
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 754 3579999987654 3 22233 2345678999999999887765 47789999988 443 23322211
Q ss_pred ---CCCeeEEEEeCCCCEEEEEECC--CEEEEEecCC----ceeeeeeccccceeEeE-ecCCCEEEEEE-cCCeEEEEE
Q 003445 227 ---TSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPI----RCHDAVDVGWSRLSDLN-VHEGKLLGCSY-NQSCVGVWV 295 (819)
Q Consensus 227 ---~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~----~~~~~~~~~~s~i~~l~-~~dg~lLa~~~-~Dg~V~IW~ 295 (819)
......|.++|||++|+++..+ .|.+|+++.. +....+......-..+. .++|++|+++. .++.|.+|+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 1257889999999999988654 6999999542 23334444333233444 47899888776 567999998
Q ss_pred ec--CCceeee
Q 003445 296 VD--ISRIEPY 304 (819)
Q Consensus 296 ld--~~~~~p~ 304 (819)
++ ++.+...
T Consensus 321 ~d~~tG~l~~~ 331 (345)
T PF10282_consen 321 IDPDTGKLTPV 331 (345)
T ss_dssp EETTTTEEEEE
T ss_pred EeCCCCcEEEe
Confidence 86 5555544
No 234
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.39 E-value=4.2e-10 Score=125.81 Aligned_cols=272 Identities=12% Similarity=0.070 Sum_probs=179.2
Q ss_pred cEE-EEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEE
Q 003445 30 RVL-VTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVD 108 (819)
Q Consensus 30 ~~L-atgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~ 108 (819)
+++ ++-..+|.|.+.|..+.+.+..+......-..+.|++|++++++++.||.|.++|+.+.+.+.++... ....+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEE
Confidence 344 45567899999999999999999865544455789999999999999999999999999999998854 4467899
Q ss_pred EecCCCEEEEEE-CCCcEEEEECCCCeEEEEEecC-------CCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeEEE
Q 003445 109 FHPFGEFFASGS-LDTNLKIWDIRKKGCIHTYKGH-------TRGVNAIRFTPDGRWVVSG-GEDNTVKLWDLTAGKLLH 179 (819)
Q Consensus 109 fsp~g~~Lasgs-~Dg~I~IwDi~t~~~i~~~~~h-------~~~I~sl~fspdg~~L~sg-s~Dg~I~IwDl~t~~~i~ 179 (819)
++++|+++++++ ..+.+.++|.++.+.++.+... ...+..+..+|....++.. -+.+.|.+.|....+.+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 999999988775 5899999999999999887642 3457788888888855544 445889999987654332
Q ss_pred -EEecCCCCeEEEEEeCCCCEEEEE-ECCCeEEEEECCCCeEEEEeCC----CCCCeeEEE-------EeC--CCCEE-E
Q 003445 180 -DFKCHEGQIQCIDFHPHEFLLATG-SADRTVKFWDLETFELIGSAGP----ETSGVRCLT-------FNP--DGRTL-L 243 (819)
Q Consensus 180 -~~~~h~~~I~sl~fspdg~~Lasg-s~Dg~I~iwDl~~~~~l~~~~~----~~~~I~sl~-------fsp--dg~~L-a 243 (819)
.............|+|++++++++ ..+..|-++|.++++.+..+.. |..+...+- |.. .+... .
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~ 244 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIP 244 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEE
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecc
Confidence 222234567889999999987665 4567999999999988766532 223333321 211 12222 2
Q ss_pred EEECCCEEEEEecCCceeeeeeccccceeEeEecCCCEEEEE----EcCCeEEEEEecCCcee
Q 003445 244 CGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCS----YNQSCVGVWVVDISRIE 302 (819)
Q Consensus 244 sgs~d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~----~~Dg~V~IW~ld~~~~~ 302 (819)
.-+.+.+.+|+....+..+.+......+.....++++++.+. ...+.|.|+|..+.+..
T Consensus 245 ~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~ 307 (369)
T PF02239_consen 245 LIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVV 307 (369)
T ss_dssp EEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEE
T ss_pred cccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCccee
Confidence 223444556777777777777777666555556888988887 34588999998887543
No 235
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.39 E-value=4.5e-11 Score=124.36 Aligned_cols=275 Identities=12% Similarity=0.212 Sum_probs=189.6
Q ss_pred EEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeEEEEEcC
Q 003445 21 CLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG-AASGTIKLWDLEEAKIVRTLTG 99 (819)
Q Consensus 21 ~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasg-s~DG~I~IWDl~s~~~i~~l~~ 99 (819)
-++|+| .++++|++..- .+.|-|..+-+..+.+.. -..|..+.|..|..+++++ ..++.|.+|++...+....+..
T Consensus 13 ~c~fSp-~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSP-CGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred ceeECC-CCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 457999 78889988765 788888877666554442 3467889999888766554 6688999999999999899998
Q ss_pred CCCCeEEEEEecCCCE-EEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC--------------
Q 003445 100 HRSNCISVDFHPFGEF-FASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED-------------- 164 (819)
Q Consensus 100 h~~~I~sl~fsp~g~~-Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~D-------------- 164 (819)
....+.+++|+|+|+. |.+..-+-.|.+|.+.+.+....-. .+..+..++|+|||++.+..+..
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence 8899999999999976 4555668899999998877654322 23446788999999887766532
Q ss_pred ----------------------CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEE--
Q 003445 165 ----------------------NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI-- 220 (819)
Q Consensus 165 ----------------------g~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l-- 220 (819)
..+.+||---.-.+..+. ..-.+..+.|+|.+++|++|+.|+.+++.+--+++.+
T Consensus 169 ~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~e 247 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGE 247 (447)
T ss_pred HHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhh
Confidence 123344422111111121 1246888999999999999999998887553221110
Q ss_pred ----------------------------------------------------------EEeC------CCCCCeeEEEEe
Q 003445 221 ----------------------------------------------------------GSAG------PETSGVRCLTFN 236 (819)
Q Consensus 221 ----------------------------------------------------------~~~~------~~~~~I~sl~fs 236 (819)
..++ .....+.-++|+
T Consensus 248 flhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs 327 (447)
T KOG4497|consen 248 FLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFS 327 (447)
T ss_pred hccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeec
Confidence 0011 112346678999
Q ss_pred CCCCEEEEEECC---CEEEEEecCCceeeeeeccccceeEeEecCC-CEEEEEEcCCeEEEEEecCCce
Q 003445 237 PDGRTLLCGLHE---SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEG-KLLGCSYNQSCVGVWVVDISRI 301 (819)
Q Consensus 237 pdg~~Lasgs~d---~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg-~lLa~~~~Dg~V~IW~ld~~~~ 301 (819)
+|..++++-.+. -+-+||+...+.+.++. .-+++..+.++.+ ..|+.+.....+++|.......
T Consensus 328 ~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~ 395 (447)
T KOG4497|consen 328 CDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRV 395 (447)
T ss_pred CCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceE
Confidence 999999988765 37777777766665542 3345555666444 5666666677899998877443
No 236
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.38 E-value=2.6e-10 Score=129.74 Aligned_cols=204 Identities=15% Similarity=0.145 Sum_probs=145.9
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCE
Q 003445 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEF 115 (819)
Q Consensus 39 g~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D---G~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~ 115 (819)
..|.++|... .....+..+...+....|+||+++|+.+... ..|++||+.+++.... ..+...+.+++|+|+|+.
T Consensus 170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 3578888753 3344555577789999999999999887654 4899999998865433 335556677899999997
Q ss_pred EEEE-ECCC--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEEecCCCCeE
Q 003445 116 FASG-SLDT--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED-N--TVKLWDLTAGKLLHDFKCHEGQIQ 189 (819)
Q Consensus 116 Lasg-s~Dg--~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~D-g--~I~IwDl~t~~~i~~~~~h~~~I~ 189 (819)
|+.. +.++ .|++||+.++... .+..+........|+|||++|+..+.. + .|++||+.+++.. .+..+...+.
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 7654 4444 5999999877543 334444445677999999998876653 2 6888998877643 3333455677
Q ss_pred EEEEeCCCCEEEEEECCC---eEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC
Q 003445 190 CIDFHPHEFLLATGSADR---TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (819)
Q Consensus 190 sl~fspdg~~Lasgs~Dg---~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (819)
...|+|+|++|+.++.++ .|.+||+.++.... +... .......|+|||+.|+....+
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTR 385 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeC
Confidence 889999999999988776 89999998765432 2222 223556899999988876554
No 237
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.38 E-value=1e-10 Score=120.50 Aligned_cols=285 Identities=20% Similarity=0.267 Sum_probs=194.7
Q ss_pred EEeccCCCEEEEEEeeCCCcEEEEEe------------CCCeEEEEECCCCceEE--Ee-cCCCCCeEEEEEcC---CCC
Q 003445 11 EFVAHSSTVNCLKIGRKSSRVLVTGG------------EDHKVNLWAIGKPNAIL--SL-SGHTSGIDSVSFDS---SEV 72 (819)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~~Latgs------------~Dg~V~IWdl~~~~~i~--~l-~~h~~~V~~l~fsp---dg~ 72 (819)
+|.+-.-++.|+.-.+ ++|++|+ ..|++.+|++.+.+... .+ ...+..+..+.|.- ++.
T Consensus 9 ~l~~~~~~~C~l~~~~---~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~ 85 (339)
T KOG0280|consen 9 ELEADPVPICCLCHTR---NVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGD 85 (339)
T ss_pred eeccCCCCcccccccc---ceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCcc
Confidence 3444555666766655 2777774 34788999987655433 11 12345677888853 455
Q ss_pred -EEEEEECCCeEEEEECCCCeEEEEEcCCCC------CeEEEEEecCCCEEEEEECCCcEEEEECCCCeE--EEEEecCC
Q 003445 73 -LVAAGAASGTIKLWDLEEAKIVRTLTGHRS------NCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC--IHTYKGHT 143 (819)
Q Consensus 73 -~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~------~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~--i~~~~~h~ 143 (819)
.++-+-..|.|.++..........+.+-.. ...++.|++.+..++++-.+|.+.+-+...... ++.++.|.
T Consensus 86 ~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He 165 (339)
T KOG0280|consen 86 FNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHE 165 (339)
T ss_pred ceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccc
Confidence 566667789999998776555445543221 356888999999999999999999766655544 34788999
Q ss_pred CCeEEEEEcC-CCCEEEEEECCCeEEEEECC-CCeEEEE-EecCCCCeEEEEEeC-CCCEEEEEECCCeEEEEECCC-Ce
Q 003445 144 RGVNAIRFTP-DGRWVVSGGEDNTVKLWDLT-AGKLLHD-FKCHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLET-FE 218 (819)
Q Consensus 144 ~~I~sl~fsp-dg~~L~sgs~Dg~I~IwDl~-t~~~i~~-~~~h~~~I~sl~fsp-dg~~Lasgs~Dg~I~iwDl~~-~~ 218 (819)
-.++...|+. +.+.+++|++|+.+..||++ .++.+.. .+.|...|.+|.-+| .+.++++|+.|-.|++||.++ ++
T Consensus 166 ~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 166 FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK 245 (339)
T ss_pred eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence 9999999986 45688999999999999999 4444444 456888999998887 488999999999999999994 66
Q ss_pred EEEEeCCCCCCeeEEEEeCC--CCEEEEEECCCEEEEEecCCcee-----eeeeccccceeEeEe-cCCCEEE-EEEcCC
Q 003445 219 LIGSAGPETSGVRCLTFNPD--GRTLLCGLHESLKVFSWEPIRCH-----DAVDVGWSRLSDLNV-HEGKLLG-CSYNQS 289 (819)
Q Consensus 219 ~l~~~~~~~~~I~sl~fspd--g~~Lasgs~d~I~Vwd~~~~~~~-----~~~~~~~s~i~~l~~-~dg~lLa-~~~~Dg 289 (819)
++.... -.++|+.+.++|. ++.|+++..++.+|.+....... .....+.+-...-.+ +...+|+ |++.|.
T Consensus 246 Pl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk 324 (339)
T KOG0280|consen 246 PLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDK 324 (339)
T ss_pred ccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeecccc
Confidence 665543 3488999999985 45667777888888877653322 111222221111111 1123444 567888
Q ss_pred eEE-EEEecCC
Q 003445 290 CVG-VWVVDIS 299 (819)
Q Consensus 290 ~V~-IW~ld~~ 299 (819)
.++ +|-.-++
T Consensus 325 ~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 325 KIRQLWLHITG 335 (339)
T ss_pred ceeeeeeeccC
Confidence 855 8855444
No 238
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=5.6e-11 Score=125.12 Aligned_cols=194 Identities=16% Similarity=0.322 Sum_probs=149.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc-CCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCC---
Q 003445 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT-GHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKK--- 133 (819)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~-~h~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~t~--- 133 (819)
...+..++|++.-..++++..|..|++||-.. +....++ .....|.+++|-|.+ ..|++|+..| |.||.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 34688899999777788999999999999776 4444444 345689999999965 4688887655 999976421
Q ss_pred -e----------EEEEEecCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEE
Q 003445 134 -G----------CIHTYKGHTRGVNAIRFTPDGRWVVSGGE-DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLA 201 (819)
Q Consensus 134 -~----------~i~~~~~h~~~I~sl~fspdg~~L~sgs~-Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~La 201 (819)
. .+....+| .+|++++|.+||..+++++. |..|.|||..++..+-......+.+.-+.|+||+.+|.
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 1 12223445 57999999999999998875 56799999999887665544567889999999999999
Q ss_pred EEECCCeEEEEEC-CCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEec
Q 003445 202 TGSADRTVKFWDL-ETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (819)
Q Consensus 202 sgs~Dg~I~iwDl-~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (819)
++.-|+..++|.. +++......- ..+.|...+|+|+|++|+....+.-.+|.+.
T Consensus 255 aAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~ 309 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLT 309 (445)
T ss_pred Eecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence 9999999999954 4444443333 3458999999999999998888877888765
No 239
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=8.1e-12 Score=135.68 Aligned_cols=284 Identities=19% Similarity=0.280 Sum_probs=206.5
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE-cCCCCCeEEEEEecCC--CEEEEEECCCcEEEE
Q 003445 52 ILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL-TGHRSNCISVDFHPFG--EFFASGSLDTNLKIW 128 (819)
Q Consensus 52 i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l-~~h~~~I~sl~fsp~g--~~Lasgs~Dg~I~Iw 128 (819)
...|..|.+.|+.|.|+..|..|++|+.|..|.+||+..++....+ .+|...|..-.|-|.. ..+++++.||.+++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 4457789999999999999999999999999999999998877665 4788888888888853 569999999999987
Q ss_pred ECCCC-eE--EEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEec---CCC---CeEEEEEeCCC-
Q 003445 129 DIRKK-GC--IHTYKGHTRGVNAIRFTPDG-RWVVSGGEDNTVKLWDLTAGKLLHDFKC---HEG---QIQCIDFHPHE- 197 (819)
Q Consensus 129 Di~t~-~~--i~~~~~h~~~I~sl~fspdg-~~L~sgs~Dg~I~IwDl~t~~~i~~~~~---h~~---~I~sl~fspdg- 197 (819)
.+... .+ ...+..|.++|..++.-|+. .-|.+++.|+.+.-+|++.+.....+.+ +.. ....++.+|..
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 76533 32 23455699999999999954 5688999999999999998765444332 233 46788889864
Q ss_pred CEEEEEECCCeEEEEECCCCeE------EEEeCC------CCCCeeEEEEeCCCCEEEEE-ECCCEEEEEecCCce----
Q 003445 198 FLLATGSADRTVKFWDLETFEL------IGSAGP------ETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC---- 260 (819)
Q Consensus 198 ~~Lasgs~Dg~I~iwDl~~~~~------l~~~~~------~~~~I~sl~fspdg~~Lasg-s~d~I~Vwd~~~~~~---- 260 (819)
..+++|+.|-.+++||.+.... +..+.+ ....|++++|+.++.-|.++ .+..|.+|.-+-+..
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~ 374 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD 374 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC
Confidence 5899999999999999875332 223322 23468999999776655555 444677774322211
Q ss_pred ---------eeeeeccc--cceeEeEe--cCCCEEEEEEcCCeEEEEEecCCceeeeeecccceeccccccccCCCCCcc
Q 003445 261 ---------HDAVDVGW--SRLSDLNV--HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSASGNLS 327 (819)
Q Consensus 261 ---------~~~~~~~~--s~i~~l~~--~dg~lLa~~~~Dg~V~IW~ld~~~~~p~~~~~~~~~n~~~~~~~~~~~~~~ 327 (819)
..++..+. ..+..+.+ +...++++|+.-|.|-||+=.++++..++.+-.. +..+-+.++..|-...
T Consensus 375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-VVNCLEpHP~~PvLAs 453 (559)
T KOG1334|consen 375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCLEPHPHLPVLAS 453 (559)
T ss_pred CCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc-eEeccCCCCCCchhhc
Confidence 11233222 22444444 5689999999999999999999999999988887 4445555565554444
Q ss_pred ccccccccc
Q 003445 328 VLNENSAKA 336 (819)
Q Consensus 328 ~~~~~~~~~ 336 (819)
.+-++++|.
T Consensus 454 SGid~DVKI 462 (559)
T KOG1334|consen 454 SGIDHDVKI 462 (559)
T ss_pred cCCccceee
Confidence 444555554
No 240
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=4.3e-10 Score=128.89 Aligned_cols=223 Identities=11% Similarity=0.060 Sum_probs=148.8
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEEEeCC--CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEE-EECCC--eE
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGED--HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAA-GAASG--TI 83 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Latgs~D--g~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Las-gs~DG--~I 83 (819)
.+.+..|...+...+|+|++..++++...+ ..|.+|++.+++... +....+.+....|+|||+.|+. ...+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 455667778899999999665555555443 468999998776543 3333445567899999998764 44444 68
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEEC-C--CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 003445 84 KLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL-D--TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVS 160 (819)
Q Consensus 84 ~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~-D--g~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~s 160 (819)
++||+.+++.. .+..+........|+|+|+.|+..+. + ..|++||+.+++...... .........|+|||++|+.
T Consensus 270 y~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 270 YVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccceEECCCCCEEEE
Confidence 88899887654 34445555667899999998877664 3 358888888776433222 2223446789999999987
Q ss_pred EECC-C--eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC---CeEEEEECCCCeEEEEeCCCCCCeeEEE
Q 003445 161 GGED-N--TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD---RTVKFWDLETFELIGSAGPETSGVRCLT 234 (819)
Q Consensus 161 gs~D-g--~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~D---g~I~iwDl~~~~~l~~~~~~~~~I~sl~ 234 (819)
...+ + .|.+||+.+++... +.. ........|+|||++++..+.+ ..|+++++... ....+..+.+.+...+
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~g~~~~p~ 424 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQGEVREPS 424 (430)
T ss_pred EEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCCCCcCCCc
Confidence 7653 3 58899998876433 221 2222356899999998877654 35777787543 3334444445566777
Q ss_pred EeC
Q 003445 235 FNP 237 (819)
Q Consensus 235 fsp 237 (819)
|+|
T Consensus 425 ws~ 427 (430)
T PRK00178 425 WSP 427 (430)
T ss_pred cCC
Confidence 776
No 241
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=1.1e-09 Score=125.51 Aligned_cols=203 Identities=13% Similarity=0.039 Sum_probs=140.6
Q ss_pred eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEE
Q 003445 40 KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFF 116 (819)
Q Consensus 40 ~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D---G~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~L 116 (819)
.|.++|..... ...+..+...+....|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|+|+.|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 47777876444 45555677789999999999988776544 469999999886543 33334445578999999987
Q ss_pred EE-EECCC--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEecCCCCeEE
Q 003445 117 AS-GSLDT--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED---NTVKLWDLTAGKLLHDFKCHEGQIQC 190 (819)
Q Consensus 117 as-gs~Dg--~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~D---g~I~IwDl~t~~~i~~~~~h~~~I~s 190 (819)
+. .+.+| .|++||+.++... .+..+........|+|||+.|+..+.. ..|+++|+.+++...... .......
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 74 44444 6889999887654 344455556678999999988776642 368888988776433221 2223345
Q ss_pred EEEeCCCCEEEEEECC-C--eEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC
Q 003445 191 IDFHPHEFLLATGSAD-R--TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (819)
Q Consensus 191 l~fspdg~~Lasgs~D-g--~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (819)
..|+|+|++|+..+.+ + .|.+||+.+++....... .......|+|||+.++.....
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEec
Confidence 7899999999887653 2 588999988765332222 222356899999999876543
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.32 E-value=8.7e-09 Score=114.66 Aligned_cols=242 Identities=21% Similarity=0.349 Sum_probs=164.9
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeC----CCeEEEEECCCC--c--eEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCeEEE
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGE----DHKVNLWAIGKP--N--AILSLSGHTSGIDSVSFDSSEVLVAAGAA-SGTIKL 85 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~----Dg~V~IWdl~~~--~--~i~~l~~h~~~V~~l~fspdg~~Lasgs~-DG~I~I 85 (819)
-......++++| ++++|++..+ +|.|..|++... . .+............++++|++++|+++.. +|.|.+
T Consensus 35 ~~~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v 113 (345)
T PF10282_consen 35 EGENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSV 113 (345)
T ss_dssp ESSSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEE
Confidence 345566788888 5566666655 579999998654 2 23333334456778999999999988875 899999
Q ss_pred EECCC-CeEEEE---Ec----------CCCCCeEEEEEecCCCEEEEEEC-CCcEEEEECCCCe--E--EEEEe-cCCCC
Q 003445 86 WDLEE-AKIVRT---LT----------GHRSNCISVDFHPFGEFFASGSL-DTNLKIWDIRKKG--C--IHTYK-GHTRG 145 (819)
Q Consensus 86 WDl~s-~~~i~~---l~----------~h~~~I~sl~fsp~g~~Lasgs~-Dg~I~IwDi~t~~--~--i~~~~-~h~~~ 145 (819)
+++.. +..... +. .......++.|+|+++++++... ...|++|++.... . ...+. .....
T Consensus 114 ~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G 193 (345)
T PF10282_consen 114 FPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG 193 (345)
T ss_dssp EEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred EEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCC
Confidence 99986 443322 21 12345788999999998888654 3579999987654 2 12222 23456
Q ss_pred eEEEEEcCCCCEEEEEEC-CCeEEEEECC--CCeE--EEEEecC------CCCeEEEEEeCCCCEEEEEE-CCCeEEEEE
Q 003445 146 VNAIRFTPDGRWVVSGGE-DNTVKLWDLT--AGKL--LHDFKCH------EGQIQCIDFHPHEFLLATGS-ADRTVKFWD 213 (819)
Q Consensus 146 I~sl~fspdg~~L~sgs~-Dg~I~IwDl~--t~~~--i~~~~~h------~~~I~sl~fspdg~~Lasgs-~Dg~I~iwD 213 (819)
-..+.|+|+++++++..+ ++.|.+|++. .+.. +..+... ......|.++|||++|+++. ..+.|.+|+
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 789999999998877664 6789999988 4432 2222211 12578899999999988876 466899999
Q ss_pred CC--CC--eEEEEeCCCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecC
Q 003445 214 LE--TF--ELIGSAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEP 257 (819)
Q Consensus 214 l~--~~--~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~ 257 (819)
+. ++ +.+..+.......+.+.++|+|++|+++..+ .|.+|+++.
T Consensus 274 ~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 274 LDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp ECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred EecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 93 23 3444454445568999999999999998765 599998864
No 243
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.29 E-value=6.8e-10 Score=126.37 Aligned_cols=220 Identities=12% Similarity=0.090 Sum_probs=148.3
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEEEeCC---CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEE-EECCC--e
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGED---HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAA-GAASG--T 82 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Latgs~D---g~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Las-gs~DG--~ 82 (819)
.+.+..+...+...+|+|++ +.|+.+..+ ..|++||+.+++... +..+...+.+++|+||++.|+. .+.++ .
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 259 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPD 259 (417)
T ss_pred CEEeecCCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 45566677789999999955 455554432 479999998776543 3345566778999999987764 44444 5
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECC-C--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 003445 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD-T--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV 159 (819)
Q Consensus 83 I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~D-g--~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~ 159 (819)
|++||+.+++.. .+..+........|+|+|+.|+..+.. + .|++||+.+++.. .+..+...+..+.|+|+|++|+
T Consensus 260 i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 260 IYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIA 337 (417)
T ss_pred EEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEE
Confidence 899999887654 344454555577899999988776643 3 6888898877643 3444556677889999999999
Q ss_pred EEECCC---eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC---eEEEEECCCCeEEEEeCCCCCCeeEE
Q 003445 160 SGGEDN---TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR---TVKFWDLETFELIGSAGPETSGVRCL 233 (819)
Q Consensus 160 sgs~Dg---~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg---~I~iwDl~~~~~l~~~~~~~~~I~sl 233 (819)
.++.++ .|.+||+.++.... +.. ........|+|+|.+|+..+.++ .+++++.. +.....+....+.+..+
T Consensus 338 ~~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~ 414 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDGGGERV-LTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREP 414 (417)
T ss_pred EEEccCCceEEEEEeCCCCCeEE-ccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCC
Confidence 888776 79999998765432 222 22344568999999888877654 45666644 44444444333444444
Q ss_pred EE
Q 003445 234 TF 235 (819)
Q Consensus 234 ~f 235 (819)
+|
T Consensus 415 ~w 416 (417)
T TIGR02800 415 AW 416 (417)
T ss_pred CC
Confidence 44
No 244
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.29 E-value=6.6e-10 Score=124.02 Aligned_cols=187 Identities=19% Similarity=0.265 Sum_probs=159.9
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEcC---CCCCeEEEEEe------c--------------CCCEEEEEECCCcE
Q 003445 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTG---HRSNCISVDFH------P--------------FGEFFASGSLDTNL 125 (819)
Q Consensus 69 pdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~---h~~~I~sl~fs------p--------------~g~~Lasgs~Dg~I 125 (819)
|...++|....||.+++||...++..+.+.. -.+.+.+..|. | +...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999999988777753 23455555653 2 22467888889999
Q ss_pred EEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEE
Q 003445 126 KIWDIRKKGCIHTYK--GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATG 203 (819)
Q Consensus 126 ~IwDi~t~~~i~~~~--~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasg 203 (819)
.+|+...++.-..+. .|.+.|.++.++.+-..|.+++.|+.+..|+....+.+..+++....+.+++.+|||..|+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999999887775 688999999999998999999999999999999999999999988899999999999999998
Q ss_pred ECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCC-----CCEEEEEE--CCCEEEEEecC
Q 003445 204 SADRTVKFWDLETFELIGSAGPETSGVRCLTFNPD-----GRTLLCGL--HESLKVFSWEP 257 (819)
Q Consensus 204 s~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspd-----g~~Lasgs--~d~I~Vwd~~~ 257 (819)
+ +.|++||+++++.+..|.+|.++|+++.|..+ |.+++++. ...+.+|-.+.
T Consensus 163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 6 78999999999999999999999999999887 78887653 34688887765
No 245
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.4e-09 Score=124.31 Aligned_cols=224 Identities=15% Similarity=0.080 Sum_probs=145.4
Q ss_pred EeccCCCEEEEEEeeCCCc--EEEEEeCCC--eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC-CC----e
Q 003445 12 FVAHSSTVNCLKIGRKSSR--VLVTGGEDH--KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA-SG----T 82 (819)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~--~Latgs~Dg--~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~-DG----~ 82 (819)
+..+...+..-+|+|++.. ++++...+| .|.+.++..++.... ....+......|+|||+.|+..+. +| .
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence 4444556677899997655 334555554 577778876654333 324445567899999998876553 22 3
Q ss_pred EEEEECCC---CeEEEEEcCCCCCeEEEEEecCCCEEEEEE-CCCc--EEEEECCC-CeEEEEEecCCCCeEEEEEcCCC
Q 003445 83 IKLWDLEE---AKIVRTLTGHRSNCISVDFHPFGEFFASGS-LDTN--LKIWDIRK-KGCIHTYKGHTRGVNAIRFTPDG 155 (819)
Q Consensus 83 I~IWDl~s---~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs-~Dg~--I~IwDi~t-~~~i~~~~~h~~~I~sl~fspdg 155 (819)
+.+|++.. ++..+....+.......+|+|||+.|+..+ .+|. |+++++.. +.....+..+...+....|+|||
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG 338 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG 338 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence 44477765 233333333334446789999999888766 4564 44555542 23344454455567789999999
Q ss_pred CEEEEEECC---CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC---CCeEEEEECCCCeEEEEeCCCCCC
Q 003445 156 RWVVSGGED---NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA---DRTVKFWDLETFELIGSAGPETSG 229 (819)
Q Consensus 156 ~~L~sgs~D---g~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~---Dg~I~iwDl~~~~~l~~~~~~~~~ 229 (819)
++|+..+.+ ..|.+||+.+++...... ....+....|+|||++|+.... ...|++||+..++...... ..+.
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~ 416 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSGE 416 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCc
Confidence 999876543 369999999887644332 3345678999999998876543 3579999998876544433 3345
Q ss_pred eeEEEEeCC
Q 003445 230 VRCLTFNPD 238 (819)
Q Consensus 230 I~sl~fspd 238 (819)
+...+|+|-
T Consensus 417 ~~~p~Ws~~ 425 (428)
T PRK01029 417 KRFPSWGAF 425 (428)
T ss_pred ccCceecCC
Confidence 667788774
No 246
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.1e-09 Score=125.90 Aligned_cols=220 Identities=11% Similarity=0.098 Sum_probs=143.8
Q ss_pred EeccCCCEEEEEEeeCCCcEEEEEeCCC--eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEE-EECCCe--EEEE
Q 003445 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDH--KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAA-GAASGT--IKLW 86 (819)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~~Latgs~Dg--~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Las-gs~DG~--I~IW 86 (819)
+..+...+.+..|+|++..++++...++ .|++||+.+++... +....+......|+|||+.|+. .+.+|. |++|
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence 3344556788999996665555554444 58888987776533 2222334457899999997765 455664 8888
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEEC-CC--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 003445 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL-DT--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE 163 (819)
Q Consensus 87 Dl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~-Dg--~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~ 163 (819)
|+.+++.. .+..+.......+|+|+|+.|+..+. ++ .|+++|+.+++.... ..+.......+|+|||++|+..+.
T Consensus 292 dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 292 DIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRSMIMVNR 369 (448)
T ss_pred ECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCEEEEEEe
Confidence 98877654 34445556678899999998877654 33 577778877764432 212223345789999999887655
Q ss_pred C-C--eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC-C--eEEEEECCCCeEEEEeCCCCCCeeEEEEeC
Q 003445 164 D-N--TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD-R--TVKFWDLETFELIGSAGPETSGVRCLTFNP 237 (819)
Q Consensus 164 D-g--~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~D-g--~I~iwDl~~~~~l~~~~~~~~~I~sl~fsp 237 (819)
+ + .|.++|+.+++... +... .......|+|||+.|+..+.+ | .+++++.. +.....+..+.+.+...+|+|
T Consensus 370 ~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 370 TNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred cCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 3 3 56778888876533 2211 122345799999988776643 3 47778874 555555655556677788876
No 247
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=4.4e-09 Score=120.29 Aligned_cols=220 Identities=15% Similarity=0.067 Sum_probs=140.5
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCE--E-EEEECC--CeEEEEECCCCeEEEEEcCCCCCeEEEEEecCC
Q 003445 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVL--V-AAGAAS--GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG 113 (819)
Q Consensus 39 g~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~--L-asgs~D--G~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g 113 (819)
..|.+.|...++. ..+......+..-.|+|||+. + ++...+ ..|.+.++.+++..+.. ...+......|+|||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCC
Confidence 3677777654443 345545566778899999974 2 243333 46888898877654332 244455678999999
Q ss_pred CEEEEEEC-CC----cEEEEECCCC---eEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCe--EEEEECCC-CeEEEEE
Q 003445 114 EFFASGSL-DT----NLKIWDIRKK---GCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNT--VKLWDLTA-GKLLHDF 181 (819)
Q Consensus 114 ~~Lasgs~-Dg----~I~IwDi~t~---~~i~~~~~h~~~I~sl~fspdg~~L~sgs-~Dg~--I~IwDl~t-~~~i~~~ 181 (819)
+.|+..+. +| .+.+|++..+ ........+.......+|+|||++|+..+ .+|. |+++++.. +.....+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 98887653 22 3444777652 33333333333446789999999888766 3564 55555542 2333444
Q ss_pred ecCCCCeEEEEEeCCCCEEEEEECC---CeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC----CEEEEE
Q 003445 182 KCHEGQIQCIDFHPHEFLLATGSAD---RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE----SLKVFS 254 (819)
Q Consensus 182 ~~h~~~I~sl~fspdg~~Lasgs~D---g~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d----~I~Vwd 254 (819)
..+...+....|+|||+.|+..+.+ ..|++||+.+++...... ....+....|+|||+.|+..... .|.+++
T Consensus 323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 4444567788999999988877643 479999999887654332 23456789999999988855332 366666
Q ss_pred ecCCcee
Q 003445 255 WEPIRCH 261 (819)
Q Consensus 255 ~~~~~~~ 261 (819)
++..+..
T Consensus 402 l~~g~~~ 408 (428)
T PRK01029 402 LITKKTR 408 (428)
T ss_pred CCCCCEE
Confidence 6655543
No 248
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=1.1e-10 Score=137.10 Aligned_cols=196 Identities=23% Similarity=0.361 Sum_probs=158.3
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCC----eEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSG----IDSVSFDSSEVLVAAGAASGTIKLWDLEEAK 92 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~----V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~ 92 (819)
+.|....+.. ....++.+..+..+-+||...+.....+...... ..-+-++++.-++++|+.-|.|.+|+....+
T Consensus 88 ~wi~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 88 DWIFGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred ccccccchhh-hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 3444444444 3446777888889999998877766655532221 1223346777899999999999999997444
Q ss_pred EEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEE-EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 93 IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH-TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (819)
Q Consensus 93 ~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~-~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwD 171 (819)
.-..+.+|.+.|.++.|+-+|.++++.|.|.++++|++.+.+... +.-+|...++.++|.|. .+++++.|.+.++|+
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWG 244 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEe
Confidence 434688999999999999999999999999999999999988766 66789999999999988 899999999999997
Q ss_pred CCCCeEEEEEecCCC-CeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 003445 172 LTAGKLLHDFKCHEG-QIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (819)
Q Consensus 172 l~t~~~i~~~~~h~~-~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~ 216 (819)
.. ++.+..+..|.+ .|+.++.+++...+++++.|+.+++||+..
T Consensus 245 ~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 245 VN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred cc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 65 555667777754 699999999999999999999999999864
No 249
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=2.7e-09 Score=118.35 Aligned_cols=276 Identities=13% Similarity=0.197 Sum_probs=180.0
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE-----ECC-----CeEEE
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG-----AAS-----GTIKL 85 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasg-----s~D-----G~I~I 85 (819)
..+.+..++++ ++++++.+ .+..+.|++......+...... .+.++.|+|.+.+|.+- ..+ -.+.+
T Consensus 34 ~~~~~v~~~S~-~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v 109 (566)
T KOG2315|consen 34 SRPCNVFAYSN-NGRLFAYS-DNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLV 109 (566)
T ss_pred CCcceeEEEcC-CCcEEEEE-cCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceee
Confidence 34466777887 77766655 5678999999887655544432 78999999999988762 112 34779
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC--EEEE---
Q 003445 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR--WVVS--- 160 (819)
Q Consensus 86 WDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~--~L~s--- 160 (819)
|+++++.....+..-...-++..|+.|..+.+-- ..+.+++|++...+.+.. +-|...|+.+.++|.+. .+++
T Consensus 110 ~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvP 187 (566)
T KOG2315|consen 110 YNVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVP 187 (566)
T ss_pred eeeccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEcc
Confidence 9999866555554333333678888776543322 346688887765332211 11334455555554311 1111
Q ss_pred --EECCC---------------------------------------------------------eEEEEECCCCeEEEEE
Q 003445 161 --GGEDN---------------------------------------------------------TVKLWDLTAGKLLHDF 181 (819)
Q Consensus 161 --gs~Dg---------------------------------------------------------~I~IwDl~t~~~i~~~ 181 (819)
.+.-+ .++++++....+...+
T Consensus 188 e~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L 267 (566)
T KOG2315|consen 188 EKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL 267 (566)
T ss_pred CCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec
Confidence 11122 3444444422222222
Q ss_pred ecCCCCeEEEEEeCCCCEEEE--EECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC----CEEEEEe
Q 003445 182 KCHEGQIQCIDFHPHEFLLAT--GSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE----SLKVFSW 255 (819)
Q Consensus 182 ~~h~~~I~sl~fspdg~~Las--gs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d----~I~Vwd~ 255 (819)
. ..++|.++.|+|+++-+++ |-.-..+.|||++ +.++..+. .++=+++-|+|.|++|+.++-+ .+.|||.
T Consensus 268 ~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 268 L-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred C-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence 2 3689999999999965544 5556789999987 45555553 4666899999999999866544 5999999
Q ss_pred cCCceeeeeeccccceeEeEecCCCEEEEEEc------CCeEEEEEecCCcee
Q 003445 256 EPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYN------QSCVGVWVVDISRIE 302 (819)
Q Consensus 256 ~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~------Dg~V~IW~ld~~~~~ 302 (819)
...+++..+...+..+..+. +||+++.++.. |+.++||+.....+.
T Consensus 344 ~n~K~i~~~~a~~tt~~eW~-PdGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 344 PNRKLIAKFKAANTTVFEWS-PDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred cchhhccccccCCceEEEEc-CCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 99999888888877655544 88998887764 789999999887665
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=4e-09 Score=121.43 Aligned_cols=202 Identities=16% Similarity=0.084 Sum_probs=135.8
Q ss_pred eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEE
Q 003445 40 KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFF 116 (819)
Q Consensus 40 ~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D---G~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~L 116 (819)
.|.++|....+. ..+..+...+.+..|+|||+.|+..+.+ ..|++||+.+++... +...........|+|+|+.|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 577778654433 4455567789999999999988876543 368999998876533 22223334578999999987
Q ss_pred EE-EECCCc--EEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC-C--CeEEEEECCCCeEEEEEecCCCCeEE
Q 003445 117 AS-GSLDTN--LKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE-D--NTVKLWDLTAGKLLHDFKCHEGQIQC 190 (819)
Q Consensus 117 as-gs~Dg~--I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~-D--g~I~IwDl~t~~~i~~~~~h~~~I~s 190 (819)
+. .+.+|. |++||+.+++.. .+..+.......+|+|||++|+..+. + ..|+++|+.+++..... ........
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~ 354 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG 354 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence 65 455664 888898877644 34445555678899999998887664 3 35788888877654322 12223345
Q ss_pred EEEeCCCCEEEEEECC-C--eEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC
Q 003445 191 IDFHPHEFLLATGSAD-R--TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (819)
Q Consensus 191 l~fspdg~~Lasgs~D-g--~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (819)
..|+|||++|+..+.+ + .|.++|+.+++....... .......|+|||+.|+....
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~--~~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTST--RLDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCC--CCCCCceECCCCCEEEEEEe
Confidence 7899999988877653 3 567788888765332221 12234579999999886554
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.4e-09 Score=121.42 Aligned_cols=188 Identities=15% Similarity=0.270 Sum_probs=158.3
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCceEEEecC---CCCCeEEEEEc--------------------CCCCEEEEEECCCeE
Q 003445 27 KSSRVLVTGGEDHKVNLWAIGKPNAILSLSG---HTSGIDSVSFD--------------------SSEVLVAAGAASGTI 83 (819)
Q Consensus 27 ~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~---h~~~V~~l~fs--------------------pdg~~Lasgs~DG~I 83 (819)
....++|....||.++||+..+++....+.. -++...+..|. .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 3667899999999999999988887776653 23455566552 134478888999999
Q ss_pred EEEECCCCeEEEEEc--CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 003445 84 KLWDLEEAKIVRTLT--GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSG 161 (819)
Q Consensus 84 ~IWDl~s~~~i~~l~--~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sg 161 (819)
.+|++..++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+...+..+..++.....+.+++.+|||..++++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999999888876 589999999999888899999999999999999999999999988899999999999999987
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCC-----CCEEEEE-ECCCeEEEEECCC
Q 003445 162 GEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPH-----EFLLATG-SADRTVKFWDLET 216 (819)
Q Consensus 162 s~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspd-----g~~Lasg-s~Dg~I~iwDl~~ 216 (819)
+ +.|++||+.+++.+..|.+|.++|.++.|.-+ |.+++++ ..+..+.+|-++.
T Consensus 163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 4 68999999999999999999999999999877 5555554 4455677776643
No 252
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.20 E-value=8.6e-10 Score=115.67 Aligned_cols=246 Identities=20% Similarity=0.314 Sum_probs=173.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----EEEEEcCCC------------CCeEEEEEecCCC--EEEEE
Q 003445 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK-----IVRTLTGHR------------SNCISVDFHPFGE--FFASG 119 (819)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~-----~i~~l~~h~------------~~I~sl~fsp~g~--~Lasg 119 (819)
..-|.++.|...|.+|++|+.+|.|.++.-+... ....++.|. ..|..+.|.++++ .|+..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4578999999999999999999999999754322 233444443 3578899998765 57777
Q ss_pred ECCCcEEEEECCCCeE-----------------------------------EEEE-ecCCCCeEEEEEcCCCCEEEEEEC
Q 003445 120 SLDTNLKIWDIRKKGC-----------------------------------IHTY-KGHTRGVNAIRFTPDGRWVVSGGE 163 (819)
Q Consensus 120 s~Dg~I~IwDi~t~~~-----------------------------------i~~~-~~h~~~I~sl~fspdg~~L~sgs~ 163 (819)
+.|.+|++|-++.... .+.+ .+|...|+++.++.|+..++++ +
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 8899999998753211 1111 2577889999999999988887 5
Q ss_pred CCeEEEEECCCCe---EEEEEecCC-----CCeEEEEEeCC-CCEEEEEECCCeEEEEECCCCeEEEE----e-------
Q 003445 164 DNTVKLWDLTAGK---LLHDFKCHE-----GQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIGS----A------- 223 (819)
Q Consensus 164 Dg~I~IwDl~t~~---~i~~~~~h~-----~~I~sl~fspd-g~~Lasgs~Dg~I~iwDl~~~~~l~~----~------- 223 (819)
|=.|.+|++.-.. .+..++.+. .-|++..|||. -++++-.+..|+|++.|++...+... +
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 8899999987432 233344333 34889999996 56777788899999999985322111 1
Q ss_pred -----CCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecC-Cceeeeee----------------ccccceeEeEecCCCE
Q 003445 224 -----GPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEP-IRCHDAVD----------------VGWSRLSDLNVHEGKL 281 (819)
Q Consensus 224 -----~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~-~~~~~~~~----------------~~~s~i~~l~~~dg~l 281 (819)
..--..|..+.|+++|+|+++-..-++++||+.- .+....+. .-+....+....++..
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~ 343 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSY 343 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcce
Confidence 1112357889999999999998888999999942 33333322 2223333333466789
Q ss_pred EEEEEcCCeEEEEEecCCceeeee
Q 003445 282 LGCSYNQSCVGVWVVDISRIEPYT 305 (819)
Q Consensus 282 La~~~~Dg~V~IW~ld~~~~~p~~ 305 (819)
+.+|+..+..++++++-+..+.+.
T Consensus 344 v~TGsy~n~frvf~~~~gsk~d~t 367 (433)
T KOG1354|consen 344 VMTGSYNNVFRVFNLARGSKEDFT 367 (433)
T ss_pred EecccccceEEEecCCCCcceeec
Confidence 999999999999997766665443
No 253
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=6e-11 Score=129.75 Aligned_cols=242 Identities=18% Similarity=0.328 Sum_probs=175.3
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC-------CCceEEEecCCCCCeEEEEEcCCCCEEEEEE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG-------KPNAILSLSGHTSGIDSVSFDSSEVLVAAGA 78 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~-------~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs 78 (819)
...++.|.||...|..++--. +.+-+++++.|.+|++|.+. +..+..++..|+.+|..+.|-.+-++++++
T Consensus 725 ~irL~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc- 802 (1034)
T KOG4190|consen 725 HIRLCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC- 802 (1034)
T ss_pred eeeeecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-
Confidence 456789999999999987653 66779999999999999883 334677888999999999999999888764
Q ss_pred CCCeEEEEECCCCeEEEEEc-----CCCCCeEEEEEecCCCEEEEE-ECCCcEEEEECCCCeEEEEEe-----cCCCCeE
Q 003445 79 ASGTIKLWDLEEAKIVRTLT-----GHRSNCISVDFHPFGEFFASG-SLDTNLKIWDIRKKGCIHTYK-----GHTRGVN 147 (819)
Q Consensus 79 ~DG~I~IWDl~s~~~i~~l~-----~h~~~I~sl~fsp~g~~Lasg-s~Dg~I~IwDi~t~~~i~~~~-----~h~~~I~ 147 (819)
||-|++||.--+..+..+. +..+.|.++.- -+...++.| +...+|+++|.+.++....++ +.+.-+.
T Consensus 803 -D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 803 -DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred -cCcceeecccccchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 8999999987776654332 11223333321 123344444 778999999999887766654 3345689
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEE-EECCCCeEEEEeCCC
Q 003445 148 AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKF-WDLETFELIGSAGPE 226 (819)
Q Consensus 148 sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~i-wDl~~~~~l~~~~~~ 226 (819)
+++..+.|++++++-.+|+|.+.|.++|+.+..+.........++ .|....|+....|.++.+ |-.-.+......++.
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpp 959 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPP 959 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCC
Confidence 999999999999999999999999999999998887666655554 366667888888888888 887776655555444
Q ss_pred CCCeeEEEEeCCCCEEEEEECCC-EEEEE
Q 003445 227 TSGVRCLTFNPDGRTLLCGLHES-LKVFS 254 (819)
Q Consensus 227 ~~~I~sl~fspdg~~Lasgs~d~-I~Vwd 254 (819)
..+..-+. .-|..|++...+. +.||.
T Consensus 960 pepahflq--svgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 960 PEPAHFLQ--SVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred Ccchhhhh--ccCceeEEeccCcEEEEEe
Confidence 33322211 1244555554443 55553
No 254
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=1.5e-09 Score=122.08 Aligned_cols=263 Identities=16% Similarity=0.211 Sum_probs=187.5
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc---------------eEEEecCCCCCeEEEEEcCCCCEEEEEEC
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN---------------AILSLSGHTSGIDSVSFDSSEVLVAAGAA 79 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~---------------~i~~l~~h~~~V~~l~fspdg~~Lasgs~ 79 (819)
......|++|+. ...++++||.||.+++..+++.. .-.++.||.+.|.-+.|+.+.+.|-+...
T Consensus 13 nnvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 345789999998 66789999999999999875432 12357799999999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEc--CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEE-EEEecCCCCeEEEEEcCCCC
Q 003445 80 SGTIKLWDLEEAKIVRTLT--GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI-HTYKGHTRGVNAIRFTPDGR 156 (819)
Q Consensus 80 DG~I~IWDl~s~~~i~~l~--~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i-~~~~~h~~~I~sl~fspdg~ 156 (819)
+|.|.+|-+-.|.....+. ...+.|.+++|+.+|..++..-.||.|.+=.++..+.- ..+++ .....+.|++|.+
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~ 169 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLE 169 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHH
Confidence 9999999998776544332 24567899999999999999999999988877644321 12222 2345789999999
Q ss_pred EEEEEECCCeEEEEECCCC-------eEEEE----EecCCCCeEEEEEe--------CCCCEEEEEECCCeEEEEECCCC
Q 003445 157 WVVSGGEDNTVKLWDLTAG-------KLLHD----FKCHEGQIQCIDFH--------PHEFLLATGSADRTVKFWDLETF 217 (819)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t~-------~~i~~----~~~h~~~I~sl~fs--------pdg~~Lasgs~Dg~I~iwDl~~~ 217 (819)
.++.+-.+|.+.+||.... .+... +......|..+.|. |+...|+++..+|.+.|-.-.+.
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 9999999999999997642 11111 11122346666664 47789999999999988765544
Q ss_pred eEEEEeCCCCCCeeEEEEeCCCCEEEEEECCC--------EEEEEecC-CceeeeeeccccceeEeEecCCCE
Q 003445 218 ELIGSAGPETSGVRCLTFNPDGRTLLCGLHES--------LKVFSWEP-IRCHDAVDVGWSRLSDLNVHEGKL 281 (819)
Q Consensus 218 ~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~--------I~Vwd~~~-~~~~~~~~~~~s~i~~l~~~dg~l 281 (819)
.....+... -.+..+.|+++|.+|++++.+. -+|-.+.+ ++....+.+..+.++.+.+..+.+
T Consensus 250 ~~Pvv~dtg-m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gL 321 (1189)
T KOG2041|consen 250 PEPVVVDTG-MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGL 321 (1189)
T ss_pred CCCeEEecc-cEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCce
Confidence 332233222 5578899999999999776431 12322332 444556667777777777754433
No 255
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.17 E-value=8.4e-10 Score=115.84 Aligned_cols=213 Identities=20% Similarity=0.352 Sum_probs=163.3
Q ss_pred CcccceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEEC-CCCceEEEec-CCCCCeEEEEEcCCCCEEEEEECC
Q 003445 3 TKRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI-GKPNAILSLS-GHTSGIDSVSFDSSEVLVAAGAAS 80 (819)
Q Consensus 3 tkr~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl-~~~~~i~~l~-~h~~~V~~l~fspdg~~Lasgs~D 80 (819)
+++-+.++.++||.+.|+....-|. ..-+++.+.|.+++||-- +.++.-..+. .-..+++++.+.++...|++|-..
T Consensus 11 ~~kp~ll~~~eG~~d~vn~~~l~~~-e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~n 89 (404)
T KOG1409|consen 11 TKKPELLSKIEGSQDDVNAAILIPK-EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDN 89 (404)
T ss_pred ccchhhhhhhcCchhhhhhheeccC-CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEec
Confidence 3566778889999999999988884 444899999999999954 3344333332 235689999999999999999999
Q ss_pred CeEEEEECC----CCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEE----------------------------
Q 003445 81 GTIKLWDLE----EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIW---------------------------- 128 (819)
Q Consensus 81 G~I~IWDl~----s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~Iw---------------------------- 128 (819)
|++.-+.+. ....++.+..|...+..+-|+-....+++.+.|..+.--
T Consensus 90 gtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~f 169 (404)
T KOG1409|consen 90 GTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAF 169 (404)
T ss_pred ceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEE
Confidence 999988664 334556666788888887777666666666655432211
Q ss_pred -------------ECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEEecCCCCeEEEEEe
Q 003445 129 -------------DIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK-LLHDFKCHEGQIQCIDFH 194 (819)
Q Consensus 129 -------------Di~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~-~i~~~~~h~~~I~sl~fs 194 (819)
+...-..+.++.+|.+.+.+++|.+....|++|..|..+.+||+-.++ ...+..+|...|..+...
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 111223566678899999999999999999999999999999997543 345667899999999888
Q ss_pred CCCCEEEEEECCCeEEEEECCC
Q 003445 195 PHEFLLATGSADRTVKFWDLET 216 (819)
Q Consensus 195 pdg~~Lasgs~Dg~I~iwDl~~ 216 (819)
+.-+.|++++.||.|.+||+..
T Consensus 250 ~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhheeeeeccCCCeEEEEeccc
Confidence 8888999999999999999874
No 256
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=5e-09 Score=116.33 Aligned_cols=231 Identities=18% Similarity=0.330 Sum_probs=161.9
Q ss_pred EEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCC--EEEE-----EECCCeEEEEECCCCe
Q 003445 20 NCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV--LVAA-----GAASGTIKLWDLEEAK 92 (819)
Q Consensus 20 ~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~--~Las-----gs~DG~I~IWDl~s~~ 92 (819)
++..|+.++. |++=-..+.+++|+..+.+.+.. .-|...|..+.++|... .+++ +|.-+.|+||......
T Consensus 129 W~~qfs~dEs--l~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~ 205 (566)
T KOG2315|consen 129 WVPQFSIDES--LAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG 205 (566)
T ss_pred cccccccchh--hhhhhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc
Confidence 6888887443 34334457799999876443322 23678899999998733 4443 3455789999876322
Q ss_pred EEEEEc---CCCCCeEEEEEecCCCE-EEEEE--CC---------CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 003445 93 IVRTLT---GHRSNCISVDFHPFGEF-FASGS--LD---------TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRW 157 (819)
Q Consensus 93 ~i~~l~---~h~~~I~sl~fsp~g~~-Lasgs--~D---------g~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~ 157 (819)
.-..+. -....-..+.|++-|.- |+.++ .| .++++++++...+...+. ..++|.++.|+|+|+.
T Consensus 206 ~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 206 QHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGRE 284 (566)
T ss_pred ccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCE
Confidence 211110 01222335778887763 33332 23 368888888555555554 5789999999999976
Q ss_pred EEE--EECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC---CeEEEEECCCCeEEEEeCCCCCCeeE
Q 003445 158 VVS--GGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD---RTVKFWDLETFELIGSAGPETSGVRC 232 (819)
Q Consensus 158 L~s--gs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~D---g~I~iwDl~~~~~l~~~~~~~~~I~s 232 (819)
+++ |..-..+.|||++ ++.+..+. .++-+++-|+|.|++|+.++.+ |.|-|||+.+.+++..+.... -+-
T Consensus 285 F~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~ 359 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTV 359 (566)
T ss_pred EEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceE
Confidence 654 5566789999987 66776664 6788999999999999988864 789999999999888876654 477
Q ss_pred EEEeCCCCEEEEEE-------CCCEEEEEecCCc
Q 003445 233 LTFNPDGRTLLCGL-------HESLKVFSWEPIR 259 (819)
Q Consensus 233 l~fspdg~~Lasgs-------~d~I~Vwd~~~~~ 259 (819)
+.|+|||.++++++ +++++||++....
T Consensus 360 ~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred EEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 89999999999775 4589999986543
No 257
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=7.7e-08 Score=102.56 Aligned_cols=261 Identities=18% Similarity=0.276 Sum_probs=174.5
Q ss_pred CCeEEEEECCCCce---EEEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCC--CeEEE--EEcCCCCCeEEE
Q 003445 38 DHKVNLWAIGKPNA---ILSLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEE--AKIVR--TLTGHRSNCISV 107 (819)
Q Consensus 38 Dg~V~IWdl~~~~~---i~~l~~h~~~V~~l~fspdg~~Lasgs~D---G~I~IWDl~s--~~~i~--~l~~h~~~I~sl 107 (819)
+.-|++|++.+..- ...+-.+.+.++-++|++++++|+++..+ |.|..|.++. |+... .......+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 46799999863321 11223467788999999999999888654 7788777764 54322 112222344789
Q ss_pred EEecCCCEEEEEEC-CCcEEEEECCCCeEE----EEEecCCCC----------eEEEEEcCCCCEEEEEECC-CeEEEEE
Q 003445 108 DFHPFGEFFASGSL-DTNLKIWDIRKKGCI----HTYKGHTRG----------VNAIRFTPDGRWVVSGGED-NTVKLWD 171 (819)
Q Consensus 108 ~fsp~g~~Lasgs~-Dg~I~IwDi~t~~~i----~~~~~h~~~----------I~sl~fspdg~~L~sgs~D-g~I~IwD 171 (819)
+++++|++++++.. .|.|.++-++....+ ... .|.+. +....|.|++++|++.... -.|.+|+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 99999999888875 578999998763222 222 24444 8899999999999887643 4799999
Q ss_pred CCCCeEEEEEe---cCCCCeEEEEEeCCCCEEEEEEC-CCeEEEEECCCC-e---EEEEeC------CCCCCeeEEEEeC
Q 003445 172 LTAGKLLHDFK---CHEGQIQCIDFHPHEFLLATGSA-DRTVKFWDLETF-E---LIGSAG------PETSGVRCLTFNP 237 (819)
Q Consensus 172 l~t~~~i~~~~---~h~~~I~sl~fspdg~~Lasgs~-Dg~I~iwDl~~~-~---~l~~~~------~~~~~I~sl~fsp 237 (819)
+..|+....-. .....-..|.|||++++..+.++ +++|-+|..... . .++.+. ....+...|.+++
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 99776432211 13445689999999998877764 899999998873 2 222221 1134567899999
Q ss_pred CCCEEEEEEC--CCEEEEEecCCce-ee---eeeccccceeEeEe-cCCCEEEEEEcC-CeEEEEEecCC
Q 003445 238 DGRTLLCGLH--ESLKVFSWEPIRC-HD---AVDVGWSRLSDLNV-HEGKLLGCSYNQ-SCVGVWVVDIS 299 (819)
Q Consensus 238 dg~~Lasgs~--d~I~Vwd~~~~~~-~~---~~~~~~s~i~~l~~-~dg~lLa~~~~D-g~V~IW~ld~~ 299 (819)
||++|.++.. +.|.+|.+++... +. ........-.++.+ +.|++|+++..+ ..|.+|..+-.
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 9999999854 4689998887533 22 22222221233433 667777777654 56888866543
No 258
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.16 E-value=3.6e-08 Score=110.96 Aligned_cols=263 Identities=14% Similarity=0.060 Sum_probs=169.8
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 003445 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDF 109 (819)
Q Consensus 30 ~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~f 109 (819)
..+++++.+|.|..+|..+++.+..+............ ++..+++++.+|.+..||..+|+.+...... ..+.+.-.
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~ 142 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPL 142 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCE
Confidence 35778888899999999999998876644332222222 4667888889999999999999988765532 22221111
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeE-----EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecC
Q 003445 110 HPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVN-----AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184 (819)
Q Consensus 110 sp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~-----sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h 184 (819)
. .+..++.++.+|.|+.||..+++.+..+......+. +..+. +..++.+..+|.+..+|..+|+.+......
T Consensus 143 v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~ 219 (377)
T TIGR03300 143 V-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVA 219 (377)
T ss_pred E-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccc
Confidence 1 255777788899999999999998887764332111 11122 346788888999999999999877654321
Q ss_pred CC----C---eEEEEEeC--CCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC-CCEEEEE
Q 003445 185 EG----Q---IQCIDFHP--HEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH-ESLKVFS 254 (819)
Q Consensus 185 ~~----~---I~sl~fsp--dg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~-d~I~Vwd 254 (819)
.. . ...+.-+| .+..+++++.+|.++.||..+++.+...... ....... ++..++++.. +.+..+|
T Consensus 220 ~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d 295 (377)
T TIGR03300 220 LPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALD 295 (377)
T ss_pred cCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEE
Confidence 10 0 00011111 2457788888999999999999887765422 1122222 3445555544 4688888
Q ss_pred ecCCceeeee-eccccceeEeEecCCCEEEEEEcCCeEEEEEecCCceee
Q 003445 255 WEPIRCHDAV-DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 255 ~~~~~~~~~~-~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~p 303 (819)
..+++..-.. ............ .+..++++..+|.|++|+.+++++.-
T Consensus 296 ~~tG~~~W~~~~~~~~~~ssp~i-~g~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 296 RRSGSELWKNDELKYRQLTAPAV-VGGYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred CCCCcEEEccccccCCccccCEE-ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 8777654332 212111122222 35677888899999999998887753
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.14 E-value=2.4e-07 Score=102.09 Aligned_cols=259 Identities=10% Similarity=0.022 Sum_probs=171.1
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC----------CCeEEEEECCCCeEEEEEcCCCC------
Q 003445 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA----------SGTIKLWDLEEAKIVRTLTGHRS------ 102 (819)
Q Consensus 39 g~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~----------DG~I~IWDl~s~~~i~~l~~h~~------ 102 (819)
+.|.+.|..+.+.+..+..-..+- .+ ++||++.|+++.. ++.|.+||..+.+.+..+.-...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 899999999999988887443333 35 9999998877765 78999999999999988874222
Q ss_pred -CeEEEEEecCCCEEEEEE-C-CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CeEE
Q 003445 103 -NCISVDFHPFGEFFASGS-L-DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA-GKLL 178 (819)
Q Consensus 103 -~I~sl~fsp~g~~Lasgs-~-Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t-~~~i 178 (819)
.-..++++|+|+++++.. . +..|.++|+.+++.+..+.-. +...-+..+.+..+ +-+.||......+.+ |+..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEecCCccE--EEeecCceEEEEecCCCceE
Confidence 234788999999988766 3 689999999999999888742 22222333322222 222344444433322 2211
Q ss_pred -EE---EecCCCCeE-EEEEeC-CCCEEEEEECCCeEEEEECCC-----CeEEEEeCC-------CCCCeeEEEEeCCCC
Q 003445 179 -HD---FKCHEGQIQ-CIDFHP-HEFLLATGSADRTVKFWDLET-----FELIGSAGP-------ETSGVRCLTFNPDGR 240 (819)
Q Consensus 179 -~~---~~~h~~~I~-sl~fsp-dg~~Lasgs~Dg~I~iwDl~~-----~~~l~~~~~-------~~~~I~sl~fspdg~ 240 (819)
.. |.....++. .-.|.+ +|.+++...+ |+|++.|+.. .+.+..+.. ..+.+.-++++++|+
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 11 111001110 003455 8888887776 9999999643 233322211 123445599999999
Q ss_pred EEEEEEC-----------CCEEEEEecCCceeeeeeccccceeEeEecCCC-EEEEEE-cCCeEEEEEecCCceee
Q 003445 241 TLLCGLH-----------ESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGK-LLGCSY-NQSCVGVWVVDISRIEP 303 (819)
Q Consensus 241 ~Lasgs~-----------d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~-lLa~~~-~Dg~V~IW~ld~~~~~p 303 (819)
.+++... +.+.++|..+.+....+..+.........+|++ +|.+.. .++.|.+.|+.+.+...
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 9998531 348888888888888888776655555668888 776555 67889999998886653
No 260
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=2.9e-09 Score=118.04 Aligned_cols=193 Identities=20% Similarity=0.297 Sum_probs=154.0
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe-
Q 003445 62 IDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK- 140 (819)
Q Consensus 62 V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~- 140 (819)
-..++++.-..-|++++....|+-++++.|..+..+....+.+++|..++...+|++|+.+|.|-+||.+....+.++.
T Consensus 136 GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~ 215 (703)
T KOG2321|consen 136 GRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDA 215 (703)
T ss_pred CccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeec
Confidence 3456665433334555566789999999999999998888999999999999999999999999999999887666553
Q ss_pred -----cCCC-----CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEeCC--CCEEEEEECCC
Q 003445 141 -----GHTR-----GVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK-CHEGQIQCIDFHPH--EFLLATGSADR 207 (819)
Q Consensus 141 -----~h~~-----~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~-~h~~~I~sl~fspd--g~~Lasgs~Dg 207 (819)
.|.+ .|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-. +..-+|..+.|.+. +..|++. ...
T Consensus 216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~ 294 (703)
T KOG2321|consen 216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKR 294 (703)
T ss_pred ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chH
Confidence 2333 39999999999999999999999999999988776543 23457899999876 4566665 356
Q ss_pred eEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCC-EEEEEec
Q 003445 208 TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFSWE 256 (819)
Q Consensus 208 ~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~ 256 (819)
.++|||-.+|+....+.+. ..+..+++-|++-+++++.++. +..|-+.
T Consensus 295 ~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 295 ILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred HhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 8999999999999888765 4499999999999999987764 5555544
No 261
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.13 E-value=2.1e-10 Score=139.67 Aligned_cols=198 Identities=20% Similarity=0.398 Sum_probs=165.2
Q ss_pred EeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003445 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS-GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE 90 (819)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~-~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s 90 (819)
++.|-..|.|+.-+| ...+.+||+.||.|++|....++.+..+. +-...|+.+.|+.+|+.+..+..||.+.+|...
T Consensus 2204 ~k~~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred eecccCceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 444567888998888 66788999999999999998888877665 223789999999999999999999999999987
Q ss_pred CeEEEEEcCCCCCeEEEEEecCCCEEEEEE---CCCcEEEEECCCC---eEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003445 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGS---LDTNLKIWDIRKK---GCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (819)
Q Consensus 91 ~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs---~Dg~I~IwDi~t~---~~i~~~~~h~~~I~sl~fspdg~~L~sgs~D 164 (819)
.++....+.|......+.|-. ..+++++ .++.+.+||.--. .++. ..|.+.++++++-|....|++|+.+
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCc
Confidence 667777888998888888874 6677654 4789999996532 2344 7899999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC
Q 003445 165 NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP 225 (819)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~ 225 (819)
|.|++||++..+.++.++. ++ ...++++|+..|.++||++.....+..+..
T Consensus 2358 G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 9999999999888877764 44 567999999999999999998887776643
No 262
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.11 E-value=4.4e-09 Score=110.45 Aligned_cols=241 Identities=18% Similarity=0.269 Sum_probs=168.5
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc-----eEEEecCC------------CCCeEEEEEcCCCC--EEE
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-----AILSLSGH------------TSGIDSVSFDSSEV--LVA 75 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~-----~i~~l~~h------------~~~V~~l~fspdg~--~La 75 (819)
..+-|.++.|.. .|.+|+||+.+|.|.++.-.... ....+..| ...|..+.|.+++. .++
T Consensus 24 eadiis~vef~~-~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 24 EADIISAVEFDH-YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hhcceeeEEeec-ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 346789999998 78899999999999999653322 22233333 34688899988664 566
Q ss_pred EEECCCeEEEEECCCCeE-----------------------------------EEEE-cCCCCCeEEEEEecCCCEEEEE
Q 003445 76 AGAASGTIKLWDLEEAKI-----------------------------------VRTL-TGHRSNCISVDFHPFGEFFASG 119 (819)
Q Consensus 76 sgs~DG~I~IWDl~s~~~-----------------------------------i~~l-~~h~~~I~sl~fsp~g~~Lasg 119 (819)
..+.|.+|++|.+..... .+.+ .+|.-.|.++.++.|+..++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 667899999998743210 1111 2577788999999999988887
Q ss_pred ECCCcEEEEECCCCe---EEEEEecCC-----CCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEE----EEEe----
Q 003445 120 SLDTNLKIWDIRKKG---CIHTYKGHT-----RGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGKLL----HDFK---- 182 (819)
Q Consensus 120 s~Dg~I~IwDi~t~~---~i~~~~~h~-----~~I~sl~fsp-dg~~L~sgs~Dg~I~IwDl~t~~~i----~~~~---- 182 (819)
. |=.|.+|++.--. .+..++.+. .-|++..|+| ..++++..+..|.|++.|++...+. ..|.
T Consensus 183 D-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 D-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred c-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 4 7789999986322 123334333 3478889999 4578888899999999999853211 1111
Q ss_pred --------cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECC-CCeEEEEeCCCC------------CCe---eEEEEeCC
Q 003445 183 --------CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE-TFELIGSAGPET------------SGV---RCLTFNPD 238 (819)
Q Consensus 183 --------~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~-~~~~l~~~~~~~------------~~I---~sl~fspd 238 (819)
.--..|..+.|+++|+++++-.. -+|++||+. ..+++..+..|. ..| ..++|+.+
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 11245788999999999998753 589999994 445555554441 223 45789999
Q ss_pred CCEEEEEECC-CEEEEEecCC
Q 003445 239 GRTLLCGLHE-SLKVFSWEPI 258 (819)
Q Consensus 239 g~~Lasgs~d-~I~Vwd~~~~ 258 (819)
+.++++|+.. -.++|+...+
T Consensus 341 ~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred cceEecccccceEEEecCCCC
Confidence 9999999876 4888886544
No 263
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.10 E-value=2.1e-09 Score=126.50 Aligned_cols=196 Identities=16% Similarity=0.253 Sum_probs=156.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCC----eEEEEEecCCCEEEEEECCCcEEEEECCCCeE
Q 003445 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSN----CISVDFHPFGEFFASGSLDTNLKIWDIRKKGC 135 (819)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~----I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~ 135 (819)
..|....+..+...++.++.++.+.+||...+.....+...... ..-+.++++.-++++|+.-+.|.+|+......
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 34444555667778889999999999999988777766633221 12233455666899999999999999874433
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE-EEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEC
Q 003445 136 IHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLH-DFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (819)
Q Consensus 136 i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~-~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl 214 (819)
-..+.+|.+.|..+.|+-||+++++.++|..+++|++.+.+... ..-+|...|+.++|+|+ .+++++.|.+.++|+.
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 33688999999999999999999999999999999999988766 55579999999999999 9999999999999976
Q ss_pred CCCeEEEEeCCC-CCCeeEEEEeCCCCEEEEEECC-CEEEEEecCC
Q 003445 215 ETFELIGSAGPE-TSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPI 258 (819)
Q Consensus 215 ~~~~~l~~~~~~-~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~ 258 (819)
. +..+..+..| ...|+.++..++...++++.+| ++++|++...
T Consensus 246 ~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 246 N-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred c-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 5 4445566666 4568999999888888887766 6999998653
No 264
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.09 E-value=5.3e-08 Score=109.57 Aligned_cols=255 Identities=16% Similarity=0.061 Sum_probs=164.6
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeE---
Q 003445 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI--- 105 (819)
Q Consensus 29 ~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~--- 105 (819)
+..++.++.+|.+..+|..+++.+...... ..+.+.... .+..++.++.+|.|..||..+|+.+..+......+.
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 345777888999999999999998876532 222221111 244677778899999999999998777654322111
Q ss_pred --EEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCC----C---eEEEEEcC--CCCEEEEEECCCeEEEEECCC
Q 003445 106 --SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTR----G---VNAIRFTP--DGRWVVSGGEDNTVKLWDLTA 174 (819)
Q Consensus 106 --sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~----~---I~sl~fsp--dg~~L~sgs~Dg~I~IwDl~t 174 (819)
+.... +..++.+..+|.+..+|.++++.+........ . ...+.-+| .+..++.++.+|.++.||..+
T Consensus 183 ~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t 260 (377)
T TIGR03300 183 SASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS 260 (377)
T ss_pred CCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC
Confidence 11122 34677888899999999999987765431100 0 00111111 356788888999999999999
Q ss_pred CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCC-CCeeEEEEeCCCCEEEEEECC-CEEE
Q 003445 175 GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET-SGVRCLTFNPDGRTLLCGLHE-SLKV 252 (819)
Q Consensus 175 ~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~-~~I~sl~fspdg~~Lasgs~d-~I~V 252 (819)
|+.+...... ...... ..+..+++++.||.|+.+|..+++.+....... ........ .+..|++++.+ .+.+
T Consensus 261 G~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~ 334 (377)
T TIGR03300 261 GRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHW 334 (377)
T ss_pred CcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEE
Confidence 9888766521 112222 245678888899999999999998876653222 22222222 34566666544 5888
Q ss_pred EEecCCceeeeeeccccce-eEeEecCCCEEEEEEcCCeEEEE
Q 003445 253 FSWEPIRCHDAVDVGWSRL-SDLNVHEGKLLGCSYNQSCVGVW 294 (819)
Q Consensus 253 wd~~~~~~~~~~~~~~s~i-~~l~~~dg~lLa~~~~Dg~V~IW 294 (819)
++..+++....+..+...+ ..-...+++ |..++.||.|+.|
T Consensus 335 ~d~~tG~~~~~~~~~~~~~~~sp~~~~~~-l~v~~~dG~l~~~ 376 (377)
T TIGR03300 335 LSREDGSFVARLKTDGSGIASPPVVVGDG-LLVQTRDGDLYAF 376 (377)
T ss_pred EECCCCCEEEEEEcCCCccccCCEEECCE-EEEEeCCceEEEe
Confidence 8888888877666554322 222334554 7788889988776
No 265
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.07 E-value=3.4e-07 Score=100.87 Aligned_cols=239 Identities=16% Similarity=0.117 Sum_probs=157.8
Q ss_pred EeeCCCcEEEEEe---------CCCeEEEEECCCCceEEEecCC-------CCCeEEEEEcCCCCEEEEEE-C-CCeEEE
Q 003445 24 IGRKSSRVLVTGG---------EDHKVNLWAIGKPNAILSLSGH-------TSGIDSVSFDSSEVLVAAGA-A-SGTIKL 85 (819)
Q Consensus 24 fsp~~~~~Latgs---------~Dg~V~IWdl~~~~~i~~l~~h-------~~~V~~l~fspdg~~Lasgs-~-DG~I~I 85 (819)
++|++..+.++.. .+..|.+||..+.+.+..+..- ......++++|||++|++.. . ++.|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8997666666666 6899999999999999888732 22344789999999988765 3 689999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEE--E---EecCCCCe-EEEEEcC-CCCEE
Q 003445 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH--T---YKGHTRGV-NAIRFTP-DGRWV 158 (819)
Q Consensus 86 WDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~--~---~~~h~~~I-~sl~fsp-dg~~L 158 (819)
+|+.+++.+..+.-.. ...-...+. ..++ .-+.||......+....... . +.....++ ..-.|.+ +|+++
T Consensus 133 vD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EECCCCcEEEEEeCCC-CcEEEEecC-CccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 9999999998887522 222222222 2222 22345555544433221111 1 11100000 0003455 88888
Q ss_pred EEEECCCeEEEEECCCC-----eEEEEEec-------CCCCeEEEEEeCCCCEEEEEE----------CCCeEEEEECCC
Q 003445 159 VSGGEDNTVKLWDLTAG-----KLLHDFKC-------HEGQIQCIDFHPHEFLLATGS----------ADRTVKFWDLET 216 (819)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~-----~~i~~~~~-------h~~~I~sl~fspdg~~Lasgs----------~Dg~I~iwDl~~ 216 (819)
+.... |.|.+.|+... +.+..+.. ..+.+.-++++|+++.+++.. ..+.|.++|..+
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 87766 99999996443 22222211 123345599999998888743 125799999999
Q ss_pred CeEEEEeCCCCCCeeEEEEeCCCC-EEEEEE--CCCEEEEEecCCceeeee-ecc
Q 003445 217 FELIGSAGPETSGVRCLTFNPDGR-TLLCGL--HESLKVFSWEPIRCHDAV-DVG 267 (819)
Q Consensus 217 ~~~l~~~~~~~~~I~sl~fspdg~-~Lasgs--~d~I~Vwd~~~~~~~~~~-~~~ 267 (819)
++.+..+... ..+..++|+|||+ .|++.. .+.+.|+|..+.+....+ ..+
T Consensus 289 ~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~vg 342 (352)
T TIGR02658 289 GKRLRKIELG-HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQLG 342 (352)
T ss_pred CeEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeeccCC
Confidence 9999988653 5789999999999 777654 346999999998877766 444
No 266
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.05 E-value=2.5e-07 Score=116.33 Aligned_cols=238 Identities=14% Similarity=0.206 Sum_probs=162.1
Q ss_pred EEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecC--C------------CCCeEEEEEcCCCCEEEEEE-CCCeEE
Q 003445 20 NCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSG--H------------TSGIDSVSFDSSEVLVAAGA-ASGTIK 84 (819)
Q Consensus 20 ~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~--h------------~~~V~~l~fspdg~~Lasgs-~DG~I~ 84 (819)
..+++++.+++++++-..++.|.+||.. +..+..+.+ . -.....+++++++..|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 4678887677788888888999999975 454444332 1 12357899999888665554 457899
Q ss_pred EEECCCCeEEEEEcCC-----------------CCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeEEEEEecC----
Q 003445 85 LWDLEEAKIVRTLTGH-----------------RSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYKGH---- 142 (819)
Q Consensus 85 IWDl~s~~~i~~l~~h-----------------~~~I~sl~fsp-~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h---- 142 (819)
++|+.++.. .++.+. -..-..++|+| ++..+++.+.++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 999887653 333210 01235789999 4556677777899999999876543 22211
Q ss_pred -----------CCCeEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEec-------------C--------CCCeE
Q 003445 143 -----------TRGVNAIRFTPDGRWVV-SGGEDNTVKLWDLTAGKLLHDFKC-------------H--------EGQIQ 189 (819)
Q Consensus 143 -----------~~~I~sl~fspdg~~L~-sgs~Dg~I~IwDl~t~~~i~~~~~-------------h--------~~~I~ 189 (819)
-.....|+|+|+|++|+ +-+.++.|++||+.++.......+ . -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12345799999998555 445678999999987653211100 0 01235
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC-------------CCCCeeEEEEeCCCCEEEEEECC-CEEEEEe
Q 003445 190 CIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP-------------ETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (819)
Q Consensus 190 sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~-------------~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (819)
.++|+++|.++++-..++.|++||..++........ .-.....++++++|+++++.+.+ .|++|+.
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 889999999989888999999999988776543321 11246789999999977766544 5999998
Q ss_pred cCCce
Q 003445 256 EPIRC 260 (819)
Q Consensus 256 ~~~~~ 260 (819)
++.+.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 87654
No 267
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.04 E-value=5e-07 Score=96.49 Aligned_cols=247 Identities=19% Similarity=0.295 Sum_probs=171.4
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeC---CCeEEEEECCC--CceEE--EecCCCCCeEEEEEcCCCCEEEEEEC-CC
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGE---DHKVNLWAIGK--PNAIL--SLSGHTSGIDSVSFDSSEVLVAAGAA-SG 81 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~---Dg~V~IWdl~~--~~~i~--~l~~h~~~V~~l~fspdg~~Lasgs~-DG 81 (819)
.++..+.+.++-|+|+| +++.|+++.. +|.|--|.++. |.... .......+-+.+++++++++|+++.. .|
T Consensus 33 ~~~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g 111 (346)
T COG2706 33 LQLVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSG 111 (346)
T ss_pred hhhccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCc
Confidence 34556778899999999 6666777643 57788887764 33322 11222334588999999999988866 58
Q ss_pred eEEEEECCC-CeE---EEEEcCCCCC----------eEEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEEEe---cCC
Q 003445 82 TIKLWDLEE-AKI---VRTLTGHRSN----------CISVDFHPFGEFFASGSL-DTNLKIWDIRKKGCIHTYK---GHT 143 (819)
Q Consensus 82 ~I~IWDl~s-~~~---i~~l~~h~~~----------I~sl~fsp~g~~Lasgs~-Dg~I~IwDi~t~~~i~~~~---~h~ 143 (819)
.|.++-+.. |.+ +..+ .|.+. +.+..|.|++++|++.+. --.|.+|++..+.....-. ...
T Consensus 112 ~v~v~p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G 190 (346)
T COG2706 112 SVSVYPLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG 190 (346)
T ss_pred eEEEEEcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC
Confidence 999999865 432 2222 24444 788999999999998764 2359999998775432211 234
Q ss_pred CCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCC-eEEEEEec---------CCCCeEEEEEeCCCCEEEEEEC-CCeEEE
Q 003445 144 RGVNAIRFTPDGRWVVSGGE-DNTVKLWDLTAG-KLLHDFKC---------HEGQIQCIDFHPHEFLLATGSA-DRTVKF 211 (819)
Q Consensus 144 ~~I~sl~fspdg~~L~sgs~-Dg~I~IwDl~t~-~~i~~~~~---------h~~~I~sl~fspdg~~Lasgs~-Dg~I~i 211 (819)
..-+.|.|+|++++.+..++ +++|.+|..... ..+..++. .......|..++||++|.++.. ...|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 56789999999998887664 889999998863 22222221 2345678889999999998864 236777
Q ss_pred EECCC--Ce--EEEEeCCCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecCC
Q 003445 212 WDLET--FE--LIGSAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPI 258 (819)
Q Consensus 212 wDl~~--~~--~l~~~~~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~ 258 (819)
|.+.. ++ .+.....+....+.+.|+++|++|+++..+ .+.+|..+..
T Consensus 271 f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 271 FSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred EEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 77653 33 233344555667999999999999998765 5999988754
No 268
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.02 E-value=1.2e-09 Score=133.17 Aligned_cols=193 Identities=16% Similarity=0.341 Sum_probs=155.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEE
Q 003445 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG-HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH 137 (819)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~-h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~ 137 (819)
-..|.++.-+|...+.++|+.||.+++|.+..++.+..++. ....|+.+.|+.+|+.+..+..||.+.+|.+. .++..
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~ 2286 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYT 2286 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cccee
Confidence 34577777788888999999999999999999888777652 33789999999999999999999999999987 66777
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEE---CCCeEEEEECCCC-eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEE
Q 003445 138 TYKGHTRGVNAIRFTPDGRWVVSGG---EDNTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWD 213 (819)
Q Consensus 138 ~~~~h~~~I~sl~fspdg~~L~sgs---~Dg~I~IwDl~t~-~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwD 213 (819)
..+.|......+.|-. ..+++++ .++.+.+||..-. ..-....+|.+.++++++.|...+|++|+.+|.|++||
T Consensus 2287 s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D 2364 (2439)
T KOG1064|consen 2287 SWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFD 2364 (2439)
T ss_pred ccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEee
Confidence 8889999999999974 5566654 4678999997532 22222278999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC-CCEEEEEecCCceeeee
Q 003445 214 LETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH-ESLKVFSWEPIRCHDAV 264 (819)
Q Consensus 214 l~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~-d~I~Vwd~~~~~~~~~~ 264 (819)
++..++++.++. ++ ...++++|+. +.++||++.....+..+
T Consensus 2365 ~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2365 IRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred hHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence 999888877764 44 4556777755 46999999876554443
No 269
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=1.7e-10 Score=132.18 Aligned_cols=222 Identities=20% Similarity=0.337 Sum_probs=171.5
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCC--eEE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASG--TIK 84 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG--~I~ 84 (819)
..+..|..|...-+|++|+- +.+.|+.|...|.|++|++.+|.......+|.++|+.+.=+.+|..+++.+... -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 34457888999999999998 778999999999999999999999999999999999999999998777665433 467
Q ss_pred EEECCC-CeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEec----CCCCeEEEEEcCCCCEEE
Q 003445 85 LWDLEE-AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG----HTRGVNAIRFTPDGRWVV 159 (819)
Q Consensus 85 IWDl~s-~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~----h~~~I~sl~fspdg~~L~ 159 (819)
+|++.+ +...++|. ...++.|+....+-+.|+......+||++++..+.++-. ....-++..|+|+..+++
T Consensus 1171 LW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 999864 44455554 356788887655556666667789999999987776421 122236788999888766
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCC
Q 003445 160 SGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG 239 (819)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg 239 (819)
.|| .+||.+..+.++.|...... ..-.|||+|.-++..++ |||+++++.++...... -..+.|+..|
T Consensus 1247 ---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc~VtFNstG 1313 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QCAVTFNSTG 1313 (1516)
T ss_pred ---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHHHHhcCcccc--ceEEEeccCc
Confidence 455 78999998888887754422 23459999999998764 99999999888765443 2678899999
Q ss_pred CEEEEEE
Q 003445 240 RTLLCGL 246 (819)
Q Consensus 240 ~~Lasgs 246 (819)
..++...
T Consensus 1314 ~VmYa~~ 1320 (1516)
T KOG1832|consen 1314 DVMYAML 1320 (1516)
T ss_pred cchhhhh
Confidence 8877654
No 270
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.00 E-value=3.9e-07 Score=112.67 Aligned_cols=281 Identities=16% Similarity=0.260 Sum_probs=183.7
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEE----ECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC--
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLW----AIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE-- 89 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IW----dl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~-- 89 (819)
.+.|.++.|.+ +...++.+..+|.|.++ +..... +.....-..+|.+++|+||+.+|+..+.+|+|.+.+-.
T Consensus 75 ~~~ivs~~yl~-d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 75 NDKIVSFQYLA-DSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCcEEEEEecc-CCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 46799999998 55568888889999999 443322 22222345799999999999999999999998877521
Q ss_pred -------------CCeEE--------EEEcC------------------------CCCCeEEEEEecCCCEEEEEEC---
Q 003445 90 -------------EAKIV--------RTLTG------------------------HRSNCISVDFHPFGEFFASGSL--- 121 (819)
Q Consensus 90 -------------s~~~i--------~~l~~------------------------h~~~I~sl~fsp~g~~Lasgs~--- 121 (819)
..+.+ ..|.| +.+.-..++|-.||.|||+.+.
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcC
Confidence 00000 00100 2334567899999999999875
Q ss_pred C---CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEEec----CCCCeEEE
Q 003445 122 D---TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE---DNTVKLWDLTAGKLLHDFKC----HEGQIQCI 191 (819)
Q Consensus 122 D---g~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~---Dg~I~IwDl~t~~~i~~~~~----h~~~I~sl 191 (819)
. ..|+||+-+ |....+...-.+--.+++|.|.|++|++.-. ...|.+|. ++|-...+|.. ....|..+
T Consensus 233 ~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l 310 (928)
T PF04762_consen 233 TGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIEL 310 (928)
T ss_pred CCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEE
Confidence 2 479999954 6655444433344468899999999988754 34577776 45655555543 35679999
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCCCeE--EEEeCC-CCCCeeEEEEeCCCC-EEEEEEC-CCEEEEEe--cCCce----
Q 003445 192 DFHPHEFLLATGSADRTVKFWDLETFEL--IGSAGP-ETSGVRCLTFNPDGR-TLLCGLH-ESLKVFSW--EPIRC---- 260 (819)
Q Consensus 192 ~fspdg~~Lasgs~Dg~I~iwDl~~~~~--l~~~~~-~~~~I~sl~fspdg~-~Lasgs~-d~I~Vwd~--~~~~~---- 260 (819)
.|++++..||....|. |.+|-..+..- .+.+.. ....+..+.|+|... .|.+.+. +.+..++| .....
T Consensus 311 ~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~ 389 (928)
T PF04762_consen 311 AWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS 389 (928)
T ss_pred EECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence 9999999999988665 99999988652 223322 233455699999643 3555554 55555444 22111
Q ss_pred ------eeee------------------------eccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCCcee
Q 003445 261 ------HDAV------------------------DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIE 302 (819)
Q Consensus 261 ------~~~~------------------------~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~~~ 302 (819)
..++ ... +.+.++.+ +++..+++-..||.|.+|..+.....
T Consensus 390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~-~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~ 461 (928)
T PF04762_consen 390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELP-SPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMW 461 (928)
T ss_pred ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCC-CCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcc
Confidence 1111 111 23334444 45556888889999999998776554
No 271
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=1.1e-07 Score=105.27 Aligned_cols=275 Identities=11% Similarity=0.174 Sum_probs=185.4
Q ss_pred EEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC-----------CeEEEEEC
Q 003445 20 NCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS-----------GTIKLWDL 88 (819)
Q Consensus 20 ~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D-----------G~I~IWDl 88 (819)
+-+.||| -|.||++-...| |.+|-=.+...++.+. |. .|.-+.|||+++||++-+.. ..++|||+
T Consensus 214 tyv~wSP-~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 214 TYVRWSP-KGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeEEecC-CceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 5688999 678899988877 9999765555555555 55 58999999999999996542 67999999
Q ss_pred CCCeEEEEEcCCCC--C-eEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC-
Q 003445 89 EEAKIVRTLTGHRS--N-CISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED- 164 (819)
Q Consensus 89 ~s~~~i~~l~~h~~--~-I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~D- 164 (819)
.+|...+.+....+ . -.-+.|+.|++|+|--.. ..|.||+..+..++-.-.-.-..|....|+|.++.|+.-...
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 99999888875332 2 234689999999998876 459999987654443222234668899999998888754322
Q ss_pred ----CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC-------C---CeEEEEECCCCeEEEEeCCCCCCe
Q 003445 165 ----NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA-------D---RTVKFWDLETFELIGSAGPETSGV 230 (819)
Q Consensus 165 ----g~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~-------D---g~I~iwDl~~~~~l~~~~~~~~~I 230 (819)
..+.+..+.+++.+.....+.-.=..+.|-.+|.+|+.--. . ..+.|+.++........-.....|
T Consensus 369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v 448 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV 448 (698)
T ss_pred cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe
Confidence 35777888777777776655555556778888888886421 1 124444444333222222234668
Q ss_pred eEEEEeCCCCEEEEEECC----CEEEEEecCC-ceeeee-eccccceeEeEe-cCCCEEEEEE---cCCeEEEEEecCC
Q 003445 231 RCLTFNPDGRTLLCGLHE----SLKVFSWEPI-RCHDAV-DVGWSRLSDLNV-HEGKLLGCSY---NQSCVGVWVVDIS 299 (819)
Q Consensus 231 ~sl~fspdg~~Lasgs~d----~I~Vwd~~~~-~~~~~~-~~~~s~i~~l~~-~dg~lLa~~~---~Dg~V~IW~ld~~ 299 (819)
...+|-|.|..+++-+.+ ++.+|..++. .....+ ...-.....+.+ +.|++++.+. ..|.+..+|++..
T Consensus 449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a 527 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA 527 (698)
T ss_pred eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchh
Confidence 899999999888765443 5889998842 111111 111111223333 7888887653 4688899988863
No 272
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.98 E-value=1.4e-07 Score=103.96 Aligned_cols=278 Identities=12% Similarity=0.129 Sum_probs=189.5
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCC-------------
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASG------------- 81 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG------------- 81 (819)
-.-++..+.||| .|.+|+.....| |.+|.-.....+..+. | ..|..+.|+|.++||.+-+..+
T Consensus 31 ~~~p~~~~~~SP-~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 31 ENWPVAYVSESP-LGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred cCcchhheeecC-cchheehhhccc-eEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 445788999999 777888777655 9999977666555555 3 4689999999999999876543
Q ss_pred --eEEEEECCCCeEEEEEcCCCCC--eE-EEEEecCCCEEEEEECCCcEEEEECCCCeEE-EEEec-CCCCeEEEEEcCC
Q 003445 82 --TIKLWDLEEAKIVRTLTGHRSN--CI-SVDFHPFGEFFASGSLDTNLKIWDIRKKGCI-HTYKG-HTRGVNAIRFTPD 154 (819)
Q Consensus 82 --~I~IWDl~s~~~i~~l~~h~~~--I~-sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i-~~~~~-h~~~I~sl~fspd 154 (819)
.+.+||+.++.++..+.+...+ .+ -+.|+-+..|+|-. ....++|+++ ++..- ..+.. ....|....|+|.
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~ 184 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPE 184 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCC
Confidence 4999999999999999876665 55 68899888887765 3466999997 33221 11111 1356888999995
Q ss_pred CC--EEEE-----EECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE-----------CCCeEEEEECCC
Q 003445 155 GR--WVVS-----GGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS-----------ADRTVKFWDLET 216 (819)
Q Consensus 155 g~--~L~s-----gs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs-----------~Dg~I~iwDl~~ 216 (819)
|+ .|+. .+..+.+++|.+..+..+.+.......=..+.|++.|.+|++-- ....+++++++.
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e 264 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE 264 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence 43 3443 45678999999987776665443333445788999998776532 235688888884
Q ss_pred CeEEEEeCCCCCCeeEEEEeCCCCEEEEEE--CC-CEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEE-c--CCe
Q 003445 217 FELIGSAGPETSGVRCLTFNPDGRTLLCGL--HE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSY-N--QSC 290 (819)
Q Consensus 217 ~~~l~~~~~~~~~I~sl~fspdg~~Lasgs--~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~-~--Dg~ 290 (819)
..+.... ...++|...+|.|.++.+++.+ .. .+.+|+++..-.+.... ...-+.++.+.+++++.++ . .|.
T Consensus 265 ~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe--~~rNT~~fsp~~r~il~agF~nl~gn 341 (561)
T COG5354 265 RSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPE--QKRNTIFFSPHERYILFAGFDNLQGN 341 (561)
T ss_pred cccceec-cccccceeeeecccCCceeEEecccccceeecccccceEEecCC--cccccccccCcccEEEEecCCccccc
Confidence 4433322 4578999999999988877654 22 58888887762222211 1222334445666665543 3 378
Q ss_pred EEEEEecCCce
Q 003445 291 VGVWVVDISRI 301 (819)
Q Consensus 291 V~IW~ld~~~~ 301 (819)
|-+|+....-.
T Consensus 342 i~i~~~~~rf~ 352 (561)
T COG5354 342 IEIFDPAGRFK 352 (561)
T ss_pred eEEeccCCceE
Confidence 89998765443
No 273
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.98 E-value=1.3e-06 Score=92.29 Aligned_cols=218 Identities=16% Similarity=0.150 Sum_probs=151.7
Q ss_pred EEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEc-CCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003445 21 CLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD-SSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (819)
Q Consensus 21 ~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fs-pdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~ 99 (819)
++.|.+.++.++++--..+.|+.|+..++.... +.... ...+++. +++.++ .+.. +.+.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~-v~~~-~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLY-VADS-GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEE-EEET-TCEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEE-EEEc-CceEEEecCCCcEEEEeec
Confidence 678888678888887788999999987776543 22222 7777887 665555 4444 4466669998865444332
Q ss_pred -----CCCCeEEEEEecCCCEEEEEECC--------CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-EEECCC
Q 003445 100 -----HRSNCISVDFHPFGEFFASGSLD--------TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV-SGGEDN 165 (819)
Q Consensus 100 -----h~~~I~sl~fsp~g~~Lasgs~D--------g~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~-sgs~Dg 165 (819)
.......+++.++|++.++.... |.|+.++.. ++...... .-...+.|+|+|+++.|+ +-+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence 33567899999999977776543 568888877 55443333 345578999999999776 455678
Q ss_pred eEEEEECCCCe-------EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEe-C
Q 003445 166 TVKLWDLTAGK-------LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN-P 237 (819)
Q Consensus 166 ~I~IwDl~t~~-------~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fs-p 237 (819)
.|..|++.... ....+....+..-.+++..+|++.++....+.|.++|.+ |+.+..+......+++++|. +
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~ 235 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGP 235 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEEST
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECC
Confidence 89999986321 122222222347889999999998888889999999988 88888877666689999994 6
Q ss_pred CCCEEEEEE
Q 003445 238 DGRTLLCGL 246 (819)
Q Consensus 238 dg~~Lasgs 246 (819)
+.+.|++.+
T Consensus 236 ~~~~L~vTt 244 (246)
T PF08450_consen 236 DGKTLYVTT 244 (246)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEe
Confidence 777777654
No 274
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=7.1e-07 Score=101.73 Aligned_cols=199 Identities=10% Similarity=0.009 Sum_probs=131.1
Q ss_pred eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCE-EEEEEC---CCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCE
Q 003445 40 KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVL-VAAGAA---SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEF 115 (819)
Q Consensus 40 ~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~-Lasgs~---DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~ 115 (819)
.|.+-|..... ...+.... .+....|+|||+. ++..+. +..|.++|+.+++...... ..+......|+|||+.
T Consensus 170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK 246 (419)
T ss_pred eEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE
Confidence 45555553333 33333233 7788999999984 554333 3579999998887655443 4555667889999987
Q ss_pred EEEEE-C--CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEEecCCCCeE
Q 003445 116 FASGS-L--DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED-N--TVKLWDLTAGKLLHDFKCHEGQIQ 189 (819)
Q Consensus 116 Lasgs-~--Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~D-g--~I~IwDl~t~~~i~~~~~h~~~I~ 189 (819)
++... . +..|+++|+.++... .+..+........|+|||+.|+..+.. | .|+++|+.+++....... +. .
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~-~ 322 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK-N 322 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC-c
Confidence 66543 2 357888898877643 344344334456899999988877643 2 689999988776433321 11 1
Q ss_pred EEEEeCCCCEEEEEECC---------CeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC
Q 003445 190 CIDFHPHEFLLATGSAD---------RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (819)
Q Consensus 190 sl~fspdg~~Lasgs~D---------g~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (819)
...|+|+|++|+..+.. ..|.+.|+.++.... +... .......|+|||+.|+....
T Consensus 323 ~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 323 NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEc
Confidence 24899999988877654 368888998876533 3222 22346889999998886654
No 275
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.97 E-value=6.3e-08 Score=100.19 Aligned_cols=228 Identities=23% Similarity=0.247 Sum_probs=162.7
Q ss_pred CCEEEEEEee--CCCc-EEEEEeCCCeEEEEECCCCceEEEecCCCC------CeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 17 STVNCLKIGR--KSSR-VLVTGGEDHKVNLWAIGKPNAILSLSGHTS------GIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 17 ~~V~~lafsp--~~~~-~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~------~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
..+..+.|.. .++. .++-+..+|.|.+|..........+.+-.. ...++.|++.+..++++..+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 3466666653 2333 566777889999998765555555544221 245778899999999999999999666
Q ss_pred CCCCeE--EEEEcCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECC-CCeEEEE-EecCCCCeEEEEEcC-CCCEEEEE
Q 003445 88 LEEAKI--VRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIR-KKGCIHT-YKGHTRGVNAIRFTP-DGRWVVSG 161 (819)
Q Consensus 88 l~s~~~--i~~l~~h~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~-t~~~i~~-~~~h~~~I~sl~fsp-dg~~L~sg 161 (819)
...... ++.+++|.-+++...|+... +.+.+|+.|+.+..||+| .++.+.. .+.|...|.+|.-+| .+.+|++|
T Consensus 150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG 229 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG 229 (339)
T ss_pred cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEe
Confidence 554443 44788999999999997644 578999999999999999 4455554 567888999998887 68899999
Q ss_pred ECCCeEEEEECC-CCeEEEEEecCCCCeEEEEEeCC--CCEEEEEECCCeEEEEECCCC--e---EEEEeCCCCCCeeEE
Q 003445 162 GEDNTVKLWDLT-AGKLLHDFKCHEGQIQCIDFHPH--EFLLATGSADRTVKFWDLETF--E---LIGSAGPETSGVRCL 233 (819)
Q Consensus 162 s~Dg~I~IwDl~-t~~~i~~~~~h~~~I~sl~fspd--g~~Lasgs~Dg~I~iwDl~~~--~---~l~~~~~~~~~I~sl 233 (819)
+.|-.|++||.+ -++++..-. -.+.|+.+.++|. +.+|+++-.+| .+|.+...+ + .+.....|.+-.+.-
T Consensus 230 sYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~ 307 (339)
T KOG0280|consen 230 SYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGG 307 (339)
T ss_pred ccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeecc
Confidence 999999999999 467766554 3588999999995 34455554444 556665543 2 233345566666666
Q ss_pred EEeCCCCEEEEEE
Q 003445 234 TFNPDGRTLLCGL 246 (819)
Q Consensus 234 ~fspdg~~Lasgs 246 (819)
.|.....+|++++
T Consensus 308 DWd~~~~~lATCs 320 (339)
T KOG0280|consen 308 DWDSKDSFLATCS 320 (339)
T ss_pred ccccccceeeeee
Confidence 6754455677654
No 276
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=2.7e-09 Score=117.00 Aligned_cols=239 Identities=19% Similarity=0.225 Sum_probs=166.2
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-------CeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCc
Q 003445 52 ILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE-------AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTN 124 (819)
Q Consensus 52 i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s-------~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~ 124 (819)
+..+.||...|..++--.+++.+++++.|.+|++|.++. ..+..+++.|..+|.++.|-.+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 455778999999998877888899999999999999863 24667888999999999999888888765 789
Q ss_pred EEEEECCCCeEEEEEe--cCCCCeEEEEEcC--CCCEEEEE-ECCCeEEEEECCCCeEEEEEec-----CCCCeEEEEEe
Q 003445 125 LKIWDIRKKGCIHTYK--GHTRGVNAIRFTP--DGRWVVSG-GEDNTVKLWDLTAGKLLHDFKC-----HEGQIQCIDFH 194 (819)
Q Consensus 125 I~IwDi~t~~~i~~~~--~h~~~I~sl~fsp--dg~~L~sg-s~Dg~I~IwDl~t~~~i~~~~~-----h~~~I~sl~fs 194 (819)
|.+||.--+..+..+. ...+.+..+..-+ +...+++| +...+|+++|.+.++...+++. ..+.+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999987776655332 1122233333333 34445555 6788999999999887777663 34558899999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEE-ECCCEEE-EEecCCceeeeeecccccee
Q 003445 195 PHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG-LHESLKV-FSWEPIRCHDAVDVGWSRLS 272 (819)
Q Consensus 195 pdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasg-s~d~I~V-wd~~~~~~~~~~~~~~s~i~ 272 (819)
+.|++++.+-.+|+|.+.|.++|+.+..+++.......++ .|..+.|+.. .+.++.| |.--.+..+-.....-.+.
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepa- 963 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPA- 963 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcch-
Confidence 9999999999999999999999999998887766666665 3455566643 3445555 5443333322211111110
Q ss_pred EeEecCCCEEEEEEcCCeEEEE
Q 003445 273 DLNVHEGKLLGCSYNQSCVGVW 294 (819)
Q Consensus 273 ~l~~~dg~lLa~~~~Dg~V~IW 294 (819)
.+.-.-|.-|++..+.+.++||
T Consensus 964 hflqsvgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 964 HFLQSVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred hhhhccCceeEEeccCcEEEEE
Confidence 0001224566666666666666
No 277
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=2.7e-07 Score=102.29 Aligned_cols=283 Identities=12% Similarity=0.178 Sum_probs=189.4
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeC-----------CCeEEEEECCCCceEEEecCCC--CCe-EEEEEcCCCCEEEEEECC
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGE-----------DHKVNLWAIGKPNAILSLSGHT--SGI-DSVSFDSSEVLVAAGAAS 80 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~-----------Dg~V~IWdl~~~~~i~~l~~h~--~~V-~~l~fspdg~~Lasgs~D 80 (819)
|. .|.-+.||| ..+||+|-+. ...+.|||+.+|.....+.... ..+ .-+.||.|++|+|.-..
T Consensus 249 Hp-~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~- 325 (698)
T KOG2314|consen 249 HP-GVQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG- 325 (698)
T ss_pred CC-CceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-
Confidence 54 488999999 8889998642 2579999999999888777522 222 24689999999988765
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECC-----CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCC
Q 003445 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD-----TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDG 155 (819)
Q Consensus 81 G~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~D-----g~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg 155 (819)
..|.||+..+-.++..-.-.-..|....|+|.++.||.-+-. ..+-+-.+.+++.+++-.-|+-.=..+-|..+|
T Consensus 326 ~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~g 405 (698)
T KOG2314|consen 326 NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSG 405 (698)
T ss_pred ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCC
Confidence 569999987654443322344678889999999888865432 356677777777777766555444567788888
Q ss_pred CEEEEEEC----------CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC---CCeEEEEECCC----Ce
Q 003445 156 RWVVSGGE----------DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA---DRTVKFWDLET----FE 218 (819)
Q Consensus 156 ~~L~sgs~----------Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~---Dg~I~iwDl~~----~~ 218 (819)
.+|+.--. -..+-|+.++........-.-...|...+|-|.|..+++-+. ..++.+|-+++ ..
T Consensus 406 dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~ 485 (698)
T KOG2314|consen 406 DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS 485 (698)
T ss_pred cEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh
Confidence 88875321 123556666654433322234567889999999988777654 35789998873 22
Q ss_pred EEEEeCCCCCCeeEEEEeCCCCEEEEEE----CCCEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEc------
Q 003445 219 LIGSAGPETSGVRCLTFNPDGRTLLCGL----HESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYN------ 287 (819)
Q Consensus 219 ~l~~~~~~~~~I~sl~fspdg~~Lasgs----~d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~------ 287 (819)
++..+.. ...+.+.|+|.|++++++. .+.+.+||.+-..+..+-.........+.+ +.|+++.+++.
T Consensus 486 lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~ 563 (698)
T KOG2314|consen 486 LVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKV 563 (698)
T ss_pred hhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhcc
Confidence 3333332 4468899999999998764 335888887753443332222222333444 78999998875
Q ss_pred CCeEEEEEecCCcee
Q 003445 288 QSCVGVWVVDISRIE 302 (819)
Q Consensus 288 Dg~V~IW~ld~~~~~ 302 (819)
|..-+||++....+.
T Consensus 564 d~GYri~tfqGrll~ 578 (698)
T KOG2314|consen 564 DNGYRIFTFQGRLLK 578 (698)
T ss_pred ccceEEEEeecHHHH
Confidence 556677877765544
No 278
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.91 E-value=2.2e-06 Score=93.57 Aligned_cols=176 Identities=16% Similarity=0.193 Sum_probs=139.3
Q ss_pred EeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCC-eEEEEECCCCeEEEEEcCCCC
Q 003445 24 IGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASG-TIKLWDLEEAKIVRTLTGHRS 102 (819)
Q Consensus 24 fsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG-~I~IWDl~s~~~i~~l~~h~~ 102 (819)
|++-++.+++..+. |+..|.+...+-.+. -+|.+.|.-..+..+..-++.|..|| .+-|+|.++++..+ +...-+
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg 402 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLG 402 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCcc
Confidence 33345667777765 778888765554443 25778899999988888899999999 99999999887654 444678
Q ss_pred CeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC----eEEEEECCCCeEE
Q 003445 103 NCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN----TVKLWDLTAGKLL 178 (819)
Q Consensus 103 ~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg----~I~IwDl~t~~~i 178 (819)
.|.++..+++|++++++.....|.++|+.++.....-+...+-|+.+.|+|+++|++-+.-+| .|+++|+.+++..
T Consensus 403 ~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 403 NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 899999999999999999999999999999987766666778899999999999999887776 5899999987765
Q ss_pred EEEecCCCCeEEEEEeCCCCEEEEEE
Q 003445 179 HDFKCHEGQIQCIDFHPHEFLLATGS 204 (819)
Q Consensus 179 ~~~~~h~~~I~sl~fspdg~~Lasgs 204 (819)
.... ..+-=.+-+|.|++++|.--+
T Consensus 483 ~vTT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 483 DVTT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EecC-CcccccCcccCCCCcEEEEEe
Confidence 4433 333345678889998887665
No 279
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.90 E-value=5.5e-07 Score=99.31 Aligned_cols=278 Identities=15% Similarity=0.196 Sum_probs=187.7
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCC---------------eEEEEECCCCceEEEecCCCCC--eE-EEEEcCCCCEEEEEE
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDH---------------KVNLWAIGKPNAILSLSGHTSG--ID-SVSFDSSEVLVAAGA 78 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg---------------~V~IWdl~~~~~i~~l~~h~~~--V~-~l~fspdg~~Lasgs 78 (819)
..|.-+.|+| .+.||++-...+ .+.+||+.++..+..+.+...+ .+ -+.|+-+..|++--
T Consensus 72 ~~V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv- 149 (561)
T COG5354 72 PDVKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV- 149 (561)
T ss_pred CCceecccCc-ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-
Confidence 4588999999 788999875433 4999999999999999877666 55 78899888877654
Q ss_pred CCCeEEEEECCCCeEE-EEEcCC-CCCeEEEEEecCCC--EEEE-----EECCCcEEEEECCCCeEEEEEecCCCCeEEE
Q 003445 79 ASGTIKLWDLEEAKIV-RTLTGH-RSNCISVDFHPFGE--FFAS-----GSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI 149 (819)
Q Consensus 79 ~DG~I~IWDl~s~~~i-~~l~~h-~~~I~sl~fsp~g~--~Las-----gs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl 149 (819)
....++|+++ ++..- ..+... ...|....|+|.++ .|+. ++..+.+++|.+..+..+.+-.-....-..+
T Consensus 150 v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qL 228 (561)
T COG5354 150 VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQL 228 (561)
T ss_pred ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEE
Confidence 3567999997 33221 111111 25678888998654 3443 4567899999998777665543333334578
Q ss_pred EEcCCCCEEEEEE-----------CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEE--EECCCeEEEEECCC
Q 003445 150 RFTPDGRWVVSGG-----------EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLAT--GSADRTVKFWDLET 216 (819)
Q Consensus 150 ~fspdg~~L~sgs-----------~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Las--gs~Dg~I~iwDl~~ 216 (819)
.|++.|++|+.-- ....++|++++...+.... ...++|...+|.|.+..+++ |-.+-.+.++|++.
T Consensus 229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred EEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeeccccc
Confidence 8999998876421 1356888888744333332 45789999999998765554 44788899999986
Q ss_pred CeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC----CEEEEEecCC-ceeeeeeccccceeEeEecCCCEEEEEEc----
Q 003445 217 FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE----SLKVFSWEPI-RCHDAVDVGWSRLSDLNVHEGKLLGCSYN---- 287 (819)
Q Consensus 217 ~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d----~I~Vwd~~~~-~~~~~~~~~~s~i~~l~~~dg~lLa~~~~---- 287 (819)
. ....+ ....=..+.|+|.+++++.++-+ .+.+|+-... .+...+........+ ..++++++.+...
T Consensus 308 N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~-wspd~qF~~~~~ts~k~ 383 (561)
T COG5354 308 N-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCD-WSPDGQFYDTDTTSEKL 383 (561)
T ss_pred c-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEee-ccCCceEEEecCCCccc
Confidence 5 33332 33445788899999999876443 4888886543 333233332222211 2268888877653
Q ss_pred --CCeEEEEEecCCcee
Q 003445 288 --QSCVGVWVVDISRIE 302 (819)
Q Consensus 288 --Dg~V~IW~ld~~~~~ 302 (819)
|..|.||++.....-
T Consensus 384 ~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 384 RVDNSIKLWDVYGAKVF 400 (561)
T ss_pred ccCcceEEEEecCchhh
Confidence 788999999876544
No 280
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.90 E-value=1.3e-06 Score=95.27 Aligned_cols=249 Identities=17% Similarity=0.207 Sum_probs=171.4
Q ss_pred CCcEEEEEeCCCeEEEEECC-CCceEEEecCCCC--CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC---C-
Q 003445 28 SSRVLVTGGEDHKVNLWAIG-KPNAILSLSGHTS--GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG---H- 100 (819)
Q Consensus 28 ~~~~Latgs~Dg~V~IWdl~-~~~~i~~l~~h~~--~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~---h- 100 (819)
++++.+....+|.=+||.+. +|+.+ ..|+. .-.+=..+.||+.++. +.-|.|.+||.++......--+ .
T Consensus 235 ~~RvYFlsD~eG~GnlYSvdldGkDl---rrHTnFtdYY~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~r 310 (668)
T COG4946 235 GERVYFLSDHEGVGNLYSVDLDGKDL---RRHTNFTDYYPRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDR 310 (668)
T ss_pred cceEEEEecccCccceEEeccCCchh---hhcCCchhccccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCcccc
Confidence 34455555566655555442 23332 22433 1233334668888776 4678999999887654322111 0
Q ss_pred --CC-----CeEEEE-Eec-CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC-eEEEE
Q 003445 101 --RS-----NCISVD-FHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN-TVKLW 170 (819)
Q Consensus 101 --~~-----~I~sl~-fsp-~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg-~I~Iw 170 (819)
.. +..-+. |++ +|++++..|. |...|.+...+-.++. +|.+.|.-..+..+++-++.|..|| .|-|+
T Consensus 311 k~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iy 387 (668)
T COG4946 311 KKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIY 387 (668)
T ss_pred ccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEE
Confidence 00 111111 332 5788888875 7788887766655543 4677798888888888999999999 89999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC--
Q 003445 171 DLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-- 248 (819)
Q Consensus 171 Dl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-- 248 (819)
|..+++.. .+...-+.|.++..+++|++++.+.....|.++|+++++....-+...+-|+.+.|+|+++++|.+..+
T Consensus 388 d~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy 466 (668)
T COG4946 388 DKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGY 466 (668)
T ss_pred ecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcce
Confidence 99988644 445567889999999999999999999999999999999877667777889999999999999988654
Q ss_pred ---CEEEEEecCCceeeeeeccccceeEeEecCCCEEEE
Q 003445 249 ---SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGC 284 (819)
Q Consensus 249 ---~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~ 284 (819)
.|++||.+..+..++..-.....+..+-+++++|..
T Consensus 467 ~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 467 YTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred eeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEE
Confidence 499999998887766533333223333366766654
No 281
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.88 E-value=7.9e-07 Score=92.80 Aligned_cols=216 Identities=15% Similarity=0.091 Sum_probs=143.1
Q ss_pred CCeEEEEECCCCeEEEEEcCC--CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 003445 80 SGTIKLWDLEEAKIVRTLTGH--RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRW 157 (819)
Q Consensus 80 DG~I~IWDl~s~~~i~~l~~h--~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~ 157 (819)
+|+|..||..+|+.+...... .....+. ..+++..+++++.++.|+.||..+|+.+..+.. ...+...- ..++..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 689999999999998877531 1222211 233567788888999999999999999988875 22222211 223556
Q ss_pred EEEEECCCeEEEEECCCCeEEEEE-ecCC---CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCC----
Q 003445 158 VVSGGEDNTVKLWDLTAGKLLHDF-KCHE---GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSG---- 229 (819)
Q Consensus 158 L~sgs~Dg~I~IwDl~t~~~i~~~-~~h~---~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~---- 229 (819)
++.++.++.|+.+|..+|+.+..+ .... ..........++..++++..++.|..+|.++|+.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 777778999999999999999884 3221 11223333334778888888999999999999998877553322
Q ss_pred ------eeEEEEeCCCCEEEEEECCC--EEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEEecCCce
Q 003445 230 ------VRCLTFNPDGRTLLCGLHES--LKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRI 301 (819)
Q Consensus 230 ------I~sl~fspdg~~Lasgs~d~--I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~ 301 (819)
+..-.+..++ .++.+..++ +.+ |..+++..- .........+....+..|+++..++.|.+||+.+++.
T Consensus 159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w--~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLW--SKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEE--EECSS-ECECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred eeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEE--EecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 1222223345 555555444 444 888877442 2223333333446677777777999999999999986
Q ss_pred e
Q 003445 302 E 302 (819)
Q Consensus 302 ~ 302 (819)
.
T Consensus 235 ~ 235 (238)
T PF13360_consen 235 V 235 (238)
T ss_dssp E
T ss_pred E
Confidence 5
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=8.8e-07 Score=100.98 Aligned_cols=193 Identities=10% Similarity=-0.011 Sum_probs=128.2
Q ss_pred CEEEEEEeeCCCcEEE-EEeC--CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE-EC--CCeEEEEECCCC
Q 003445 18 TVNCLKIGRKSSRVLV-TGGE--DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG-AA--SGTIKLWDLEEA 91 (819)
Q Consensus 18 ~V~~lafsp~~~~~La-tgs~--Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasg-s~--DG~I~IWDl~s~ 91 (819)
.+....|+|++.++++ +... +..|+++|+.+++...... ..+......|+|||+.|+.. +. +..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6778999997665344 3333 4578999998776655443 45566778899999866554 32 357888898887
Q ss_pred eEEEEEcCCCCCeEEEEEecCCCEEEEEECC-C--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC----
Q 003445 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLD-T--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED---- 164 (819)
Q Consensus 92 ~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~D-g--~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~D---- 164 (819)
+..+ +..+........|+|||+.|+..+.. + .|+++|+.+++....... .. ....|+|||++|+.....
T Consensus 268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred cEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcCCCcc
Confidence 6543 44344333456899999987777642 2 688889988776433321 11 124899999998876653
Q ss_pred -----CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC---eEEEEECCCC
Q 003445 165 -----NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR---TVKFWDLETF 217 (819)
Q Consensus 165 -----g~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg---~I~iwDl~~~ 217 (819)
..|.+.|+.++... .+... .......|+|||+.|+....++ .+.++++...
T Consensus 344 ~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred cCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 36888999887643 33322 2334588999999887766432 4667777653
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.87 E-value=2.2e-06 Score=107.88 Aligned_cols=236 Identities=14% Similarity=0.169 Sum_probs=155.6
Q ss_pred EEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEcC-C-------------CCCeEEEEEecCCCEEEEEE-CCCcEE
Q 003445 63 DSVSFDSS-EVLVAAGAASGTIKLWDLEEAKIVRTLTG-H-------------RSNCISVDFHPFGEFFASGS-LDTNLK 126 (819)
Q Consensus 63 ~~l~fspd-g~~Lasgs~DG~I~IWDl~s~~~i~~l~~-h-------------~~~I~sl~fsp~g~~Lasgs-~Dg~I~ 126 (819)
..++++++ +.++++-..++.|.+||... ..+..+.+ . -..-..+++.++++.|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788764 66777777789999999864 44443332 1 11246889999888666654 457799
Q ss_pred EEECCCCeEEEEEecC-----------------CCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEecC----
Q 003445 127 IWDIRKKGCIHTYKGH-----------------TRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH---- 184 (819)
Q Consensus 127 IwDi~t~~~i~~~~~h-----------------~~~I~sl~fsp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h---- 184 (819)
++|..++. +.++.+- -..-+.++|+| ++..+++.+.++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 99987764 3333210 01235799999 5666677777899999999877543 22111
Q ss_pred -----------CCCeEEEEEeCCCC-EEEEEECCCeEEEEECCCCeEEEEe-------------CCC--------CCCee
Q 003445 185 -----------EGQIQCIDFHPHEF-LLATGSADRTVKFWDLETFELIGSA-------------GPE--------TSGVR 231 (819)
Q Consensus 185 -----------~~~I~sl~fspdg~-~Lasgs~Dg~I~iwDl~~~~~l~~~-------------~~~--------~~~I~ 231 (819)
-.....++|+|++. ++++-+.++.|++||+.++...... ... -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12346799999988 4455566789999999876532111 000 11246
Q ss_pred EEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeecc-------------ccceeEeEe-cCCCEEEEEEcCCeEEEEEe
Q 003445 232 CLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVG-------------WSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 296 (819)
Q Consensus 232 sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~-------------~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~l 296 (819)
.++|+++|.++++...+ .|++||.++.........+ ......+.+ .+|+++++...++.|++|++
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 89999999876666544 6999999877655433211 112233443 67888889899999999999
Q ss_pred cCCce
Q 003445 297 DISRI 301 (819)
Q Consensus 297 d~~~~ 301 (819)
++++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 98775
No 284
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=6.6e-08 Score=109.27 Aligned_cols=243 Identities=13% Similarity=0.166 Sum_probs=180.4
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEe--cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSL--SGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l--~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
|.+.||+..|.-+.|+. ..+-|-+...+|.|.+|-+-++...... ....+.|.+++|..||..++....||.|.+=.
T Consensus 65 QtLeGH~~sV~vvTWNe-~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNE-NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred hhhccCcceEEEEEecc-ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence 68899999999999997 5667999999999999998777654332 23466899999999999999999999999888
Q ss_pred CCCCeEEE-EEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-------eEEEE----EecCCCCeEEEEEc---
Q 003445 88 LEEAKIVR-TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-------GCIHT----YKGHTRGVNAIRFT--- 152 (819)
Q Consensus 88 l~s~~~i~-~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~-------~~i~~----~~~h~~~I~sl~fs--- 152 (819)
++..+... .+++ .....+.|++|.+.++.+-.+|.+.+||-+.. .+... +......|-.+.|.
T Consensus 144 vdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~ 221 (1189)
T KOG2041|consen 144 VDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGP 221 (1189)
T ss_pred eccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCc
Confidence 77654432 2222 22347889999999888888999999997532 12111 12222335666664
Q ss_pred -----CCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC---------eEEEEECCCCe
Q 003445 153 -----PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR---------TVKFWDLETFE 218 (819)
Q Consensus 153 -----pdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg---------~I~iwDl~~~~ 218 (819)
||...|+.+..+|.+.|..-.+......+. ..-.+..+.|+++|.+||+++.+. .|++|.. -|+
T Consensus 222 ~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~ 299 (1189)
T KOG2041|consen 222 YQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGH 299 (1189)
T ss_pred cccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chh
Confidence 477789999999998887554433333333 236688999999999999998642 5777754 478
Q ss_pred EEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecC
Q 003445 219 LIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEP 257 (819)
Q Consensus 219 ~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~ 257 (819)
.+..++.....|++++|-..|-.++.+-+..|.+=++.+
T Consensus 300 i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP 338 (1189)
T KOG2041|consen 300 IVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRP 338 (1189)
T ss_pred heEEEecCCceeeeeEEcCCceEEEEEecceEEEEeecc
Confidence 888888889999999999888888877766666555544
No 285
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.86 E-value=4.3e-06 Score=103.63 Aligned_cols=239 Identities=18% Similarity=0.257 Sum_probs=162.2
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCC---eEEEEECCCCc---eEEEec-----CCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDH---KVNLWAIGKPN---AILSLS-----GHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg---~V~IWdl~~~~---~i~~l~-----~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (819)
..+...+|.+....++++.+... .|.+....... .+..+. ...+.|.++.|-++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 36778888875555544444332 34444433222 333333 23468999999999999999999999999
Q ss_pred E----ECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE-----------------------
Q 003445 86 W----DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT----------------------- 138 (819)
Q Consensus 86 W----Dl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~----------------------- 138 (819)
+ +..+... ...-.-...|.+++|+||+..|+..+.+++|.+-+- +..++..
T Consensus 102 ~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeT 179 (928)
T PF04762_consen 102 VREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKET 179 (928)
T ss_pred EEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccC
Confidence 9 5544332 222223568999999999999999999998887642 1111111
Q ss_pred -Eec------------------------CCCCeEEEEEcCCCCEEEEEEC---C---CeEEEEECCCCeEEEEEecCCCC
Q 003445 139 -YKG------------------------HTRGVNAIRFTPDGRWVVSGGE---D---NTVKLWDLTAGKLLHDFKCHEGQ 187 (819)
Q Consensus 139 -~~~------------------------h~~~I~sl~fspdg~~L~sgs~---D---g~I~IwDl~t~~~i~~~~~h~~~ 187 (819)
|.| +...-..|+|-.||.++++.+- . ..|+||+-. |........-.+-
T Consensus 180 QF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gL 258 (928)
T PF04762_consen 180 QFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGL 258 (928)
T ss_pred ccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCc
Confidence 100 1224457889999999998774 3 369999965 7765555443444
Q ss_pred eEEEEEeCCCCEEEEEEC---CCeEEEEECCCCeEEEE----eCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCc
Q 003445 188 IQCIDFHPHEFLLATGSA---DRTVKFWDLETFELIGS----AGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIR 259 (819)
Q Consensus 188 I~sl~fspdg~~Lasgs~---Dg~I~iwDl~~~~~l~~----~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~ 259 (819)
-.+++|-|.|++||+... ...|.+|.-. |-.-.. +......|..+.|++|+..|++...+.|.+|......
T Consensus 259 e~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYH 336 (928)
T PF04762_consen 259 EGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYH 336 (928)
T ss_pred cCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCE
Confidence 568899999999999864 3467777743 332222 2345678999999999999999988889999876644
No 286
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=1.3e-07 Score=108.23 Aligned_cols=289 Identities=18% Similarity=0.205 Sum_probs=204.5
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCC------------CCEEEEEECCCe
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSS------------EVLVAAGAASGT 82 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspd------------g~~Lasgs~DG~ 82 (819)
|...-.++.|+| +| ++|-|+. ..|.+-|..+-+.+..+..|...|+.+.|.|- .-+|+++...|.
T Consensus 14 ~~sN~~A~Dw~~-~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 14 SRSNRNAADWSP-SG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred CcccccccccCc-cc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 344567889998 44 5666654 56899999999999999999999999999762 125778888999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEecC---C-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCE
Q 003445 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPF---G-EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRW 157 (819)
Q Consensus 83 I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~---g-~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fsp-dg~~ 157 (819)
|.+||...+..+..+..|.+++..++|-+. . ..|++-....+|.+|+..+|+.++.+........|+.+.| |.+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 999999999999999999999999999763 3 4566667778999999999999988876666778899999 6777
Q ss_pred EEEEECCCeEEEEECCC-------CeEEEEEecCCC------------C-------------eEEEEEeCCCCEEEEEEC
Q 003445 158 VVSGGEDNTVKLWDLTA-------GKLLHDFKCHEG------------Q-------------IQCIDFHPHEFLLATGSA 205 (819)
Q Consensus 158 L~sgs~Dg~I~IwDl~t-------~~~i~~~~~h~~------------~-------------I~sl~fspdg~~Lasgs~ 205 (819)
+..-+..|.+.+.+.-. |+..+.-..|.. . ...++|+|.-+-++....
T Consensus 171 ~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~ 250 (1062)
T KOG1912|consen 171 FCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF 250 (1062)
T ss_pred EEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe
Confidence 77777888888776532 222222222221 0 113567887554444556
Q ss_pred CCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCC--CEEEEEECC-CEEEEEecCCce----------------eeee-e
Q 003445 206 DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG--RTLLCGLHE-SLKVFSWEPIRC----------------HDAV-D 265 (819)
Q Consensus 206 Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg--~~Lasgs~d-~I~Vwd~~~~~~----------------~~~~-~ 265 (819)
...+.++|++-..++.......+.+.-+.|-|++ ..|++...+ .+.+|--+.... .+++ .
T Consensus 251 prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~ 330 (1062)
T KOG1912|consen 251 PRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRP 330 (1062)
T ss_pred ccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEee
Confidence 7889999999988998888777888888888775 467777555 477775433100 0111 0
Q ss_pred -ccccceeEeEecC-CCEEEEEEcCCeEEEEEecCCceeeeee
Q 003445 266 -VGWSRLSDLNVHE-GKLLGCSYNQSCVGVWVVDISRIEPYTI 306 (819)
Q Consensus 266 -~~~s~i~~l~~~d-g~lLa~~~~Dg~V~IW~ld~~~~~p~~~ 306 (819)
..+.++....++. ...++.-..+|.+.+|.+..+++.+-+.
T Consensus 331 m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~ 373 (1062)
T KOG1912|consen 331 MEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYR 373 (1062)
T ss_pred chhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccc
Confidence 1112222222232 4555566778999999999888765443
No 287
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=3.9e-08 Score=106.57 Aligned_cols=247 Identities=16% Similarity=0.181 Sum_probs=181.4
Q ss_pred ccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC---CceEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECC
Q 003445 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK---PNAILSLSGHTSGIDSVSFDSSEVLVAAGAA-SGTIKLWDLE 89 (819)
Q Consensus 14 ~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~---~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~-DG~I~IWDl~ 89 (819)
-|.+.|+.+... -..++.+++.||.++.|.-.. -+.+..+..|-..|.+++.+-++.++.+++. |..++++|++
T Consensus 7 mhrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeee--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 488888888776 456899999999999997533 1334455678889999999999999999877 9999999998
Q ss_pred CCeEEEEEcC--CCCCeEEEEEecCCC---EEEEE-ECCCcEEEEECCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEE
Q 003445 90 EAKIVRTLTG--HRSNCISVDFHPFGE---FFASG-SLDTNLKIWDIRKKG--CIHTYKGHTRGVNAIRFTPDGRWVVSG 161 (819)
Q Consensus 90 s~~~i~~l~~--h~~~I~sl~fsp~g~---~Lasg-s~Dg~I~IwDi~t~~--~i~~~~~h~~~I~sl~fspdg~~L~sg 161 (819)
+...+.-++- ..+.+. .+...|. .++++ -.+|.|.++|-.... ....-+-|..+|.++.+.+-+..+++.
T Consensus 85 n~DminmiKL~~lPg~a~--wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAE--WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred ccchhhhcccccCCCceE--EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence 7665533321 222221 1222231 33333 357899999977544 233345689999999999999999999
Q ss_pred ECCCeEEEEECCC------CeEEEEEe---------cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC-
Q 003445 162 GEDNTVKLWDLTA------GKLLHDFK---------CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP- 225 (819)
Q Consensus 162 s~Dg~I~IwDl~t------~~~i~~~~---------~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~- 225 (819)
...|.|..|.... .+....++ -......++.|+|+|..+.+-+.|..|+++++.+++.++.+..
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEV 242 (558)
T ss_pred cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhcc
Confidence 9999999998772 22222221 1234578999999999999999999999999998875544311
Q ss_pred -------------------------------C-CCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeeee
Q 003445 226 -------------------------------E-TSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAV 264 (819)
Q Consensus 226 -------------------------------~-~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~ 264 (819)
+ ...-..+.|...|++|+.|+-=+|+|++++++++..++
T Consensus 243 ~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 243 LTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRIL 313 (558)
T ss_pred chhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEe
Confidence 1 12235678999999999999889999999998887665
No 288
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.83 E-value=1.4e-06 Score=91.02 Aligned_cols=218 Identities=18% Similarity=0.125 Sum_probs=144.2
Q ss_pred CCCeEEEEECCCCceEEEecCCCCCeEEEE--EcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCC
Q 003445 37 EDHKVNLWAIGKPNAILSLSGHTSGIDSVS--FDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE 114 (819)
Q Consensus 37 ~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~--fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~ 114 (819)
++|.|..||..+++.+....- ...+.... ..+++..+++++.++.|..||..+|+.+..+.. ...+.... ...+.
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCCEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 368999999999999988863 11122222 233566777778999999999999999887774 22221111 22456
Q ss_pred EEEEEECCCcEEEEECCCCeEEEEE-ecCC---CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCC---
Q 003445 115 FFASGSLDTNLKIWDIRKKGCIHTY-KGHT---RGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ--- 187 (819)
Q Consensus 115 ~Lasgs~Dg~I~IwDi~t~~~i~~~-~~h~---~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~--- 187 (819)
.+++++.++.|+.+|..+++.+... .... ..........++..++++..++.|..+|.++|+.+.........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 6777778899999999999999884 4321 11122233334788999999999999999999999888764322
Q ss_pred -------eEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE-CCCEEEEEecCCc
Q 003445 188 -------IQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL-HESLKVFSWEPIR 259 (819)
Q Consensus 188 -------I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs-~d~I~Vwd~~~~~ 259 (819)
+..-....++ .++.++.++.+.-+|+.+++.+.... ...+..+ ...++..|++++ ++.+..||..+++
T Consensus 158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 1122222344 67777777754444999999775333 2223332 346677777776 5569999988876
Q ss_pred ee
Q 003445 260 CH 261 (819)
Q Consensus 260 ~~ 261 (819)
..
T Consensus 234 ~~ 235 (238)
T PF13360_consen 234 VV 235 (238)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 289
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=3.1e-07 Score=105.16 Aligned_cols=238 Identities=16% Similarity=0.226 Sum_probs=178.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecC------------CCEEEEEECCCcEE
Q 003445 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPF------------GEFFASGSLDTNLK 126 (819)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~------------g~~Lasgs~Dg~I~ 126 (819)
...-.++.|+|.| +|+.|+ ...|.+.|..+.+.++.+.-|...|+.+.|.|. .-.||++...|.|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 3346788999888 566655 567899999999999999999999999999873 12577888899999
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEcC---CC-CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeC-CCCEEE
Q 003445 127 IWDIRKKGCIHTYKGHTRGVNAIRFTP---DG-RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHP-HEFLLA 201 (819)
Q Consensus 127 IwDi~t~~~i~~~~~h~~~I~sl~fsp---dg-~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fsp-dg~~La 201 (819)
+||...+..+..+..|..++..++|-+ +. ..|++-....+|.+|+..+|+....+........|+.+.| |.+.+.
T Consensus 93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence 999999988888998999999999977 33 4566667788999999999999988887667778899999 456666
Q ss_pred EEECCCeEEEEECCC-------CeEEEEeCCCCC----------------------C---eeEEEEeCC-CCEEEEEECC
Q 003445 202 TGSADRTVKFWDLET-------FELIGSAGPETS----------------------G---VRCLTFNPD-GRTLLCGLHE 248 (819)
Q Consensus 202 sgs~Dg~I~iwDl~~-------~~~l~~~~~~~~----------------------~---I~sl~fspd-g~~Lasgs~d 248 (819)
..+..|.+.+.+.-. ++.++....|.. . ...++|+|. .+.++.....
T Consensus 173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pr 252 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPR 252 (1062)
T ss_pred EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEecc
Confidence 666677777766531 333333222211 0 122467776 4456677778
Q ss_pred CEEEEEecCCceeeeeeccccceeEeEe---cCCCEEEEEEcCCeEEEEEecC
Q 003445 249 SLKVFSWEPIRCHDAVDVGWSRLSDLNV---HEGKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 249 ~I~Vwd~~~~~~~~~~~~~~s~i~~l~~---~dg~lLa~~~~Dg~V~IW~ld~ 298 (819)
.+.|+|++-..+..++.........+.+ +....|.|.-.||++.||.-..
T Consensus 253 ellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 253 ELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 8999999999998887665553333322 5668899999999999997655
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.83 E-value=5.7e-07 Score=92.10 Aligned_cols=228 Identities=11% Similarity=0.010 Sum_probs=153.2
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEe-cCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEE
Q 003445 29 SRVLVTGGEDHKVNLWAIGKPNAILSL-SGHTSGIDSVSFDSS-EVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCIS 106 (819)
Q Consensus 29 ~~~Latgs~Dg~V~IWdl~~~~~i~~l-~~h~~~V~~l~fspd-g~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~s 106 (819)
..+||.||..|...+|...+.+....+ ..|...|+-+.=..+ .--+..++.|.++++.+++.+..........-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 347899999999999999765544433 334444433321112 223455677888888887654432222211123788
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCe--EEE-EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE---
Q 003445 107 VDFHPFGEFFASGSLDTNLKIWDIRKKG--CIH-TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHD--- 180 (819)
Q Consensus 107 l~fsp~g~~Lasgs~Dg~I~IwDi~t~~--~i~-~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~--- 180 (819)
+.++++++++++.+....|..|.+.... .+. ......+.-.+..|+.....++++..||++.|||++.......
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 9999999999999999999999887543 222 2223334456788999899999999999999999987543322
Q ss_pred --EecCCCCeEEEEEeCCCC--EEEEEECCCeEEEEECCCCeEEEEeCCC--------CCCeeEEEEeCCCCEEEEEECC
Q 003445 181 --FKCHEGQIQCIDFHPHEF--LLATGSADRTVKFWDLETFELIGSAGPE--------TSGVRCLTFNPDGRTLLCGLHE 248 (819)
Q Consensus 181 --~~~h~~~I~sl~fspdg~--~Lasgs~Dg~I~iwDl~~~~~l~~~~~~--------~~~I~sl~fspdg~~Lasgs~d 248 (819)
-..|.+.+..+.|++.|. +|...-.-+.+.+.|++++...+.+... ...|..-.|+.++.-+.+.+..
T Consensus 244 strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 234889999999998653 4555545678999999998765554322 2337777788777777776665
Q ss_pred CEEEEEec
Q 003445 249 SLKVFSWE 256 (819)
Q Consensus 249 ~I~Vwd~~ 256 (819)
.+.-|...
T Consensus 324 ~~ae~ni~ 331 (344)
T KOG4532|consen 324 QGAEYNIL 331 (344)
T ss_pred hhheeecc
Confidence 44444443
No 291
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.83 E-value=1.5e-06 Score=98.46 Aligned_cols=256 Identities=14% Similarity=0.021 Sum_probs=159.4
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCCCeEE-EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEE-EE
Q 003445 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDS-VSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCIS-VD 108 (819)
Q Consensus 31 ~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~-l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~s-l~ 108 (819)
.++.++.+|.+..+|..+++.+....... .+.+ ... .+..++.++.+|.|..+|..+|+.+..+......... ..
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 198 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE 198 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence 46667788999999999999988776432 2221 111 2345667788999999999999988776532111100 00
Q ss_pred Eec--CCCEEEEEECCCcEEEEECCCCeEEEEEecCCC-------CeEEEEEcC--CCCEEEEEECCCeEEEEECCCCeE
Q 003445 109 FHP--FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTR-------GVNAIRFTP--DGRWVVSGGEDNTVKLWDLTAGKL 177 (819)
Q Consensus 109 fsp--~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~-------~I~sl~fsp--dg~~L~sgs~Dg~I~IwDl~t~~~ 177 (819)
-+| .+..++.++.+|.+..+|..+++.+........ ....+..+| .+..++.++.+|.+..+|..+|+.
T Consensus 199 ~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~ 278 (394)
T PRK11138 199 SAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI 278 (394)
T ss_pred CCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE
Confidence 011 134577778899999999999987766532110 011111223 355677788899999999999988
Q ss_pred EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCC-CeeEEEEeCCCCEEEEEECC-CEEEEEe
Q 003445 178 LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETS-GVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (819)
Q Consensus 178 i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~-~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (819)
+..... +....+. ..+..|+.++.+|.+..+|..+++.+........ ...+..+. +| .|+++..+ .+.++|.
T Consensus 279 ~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~g-~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 279 VWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-NG-YLVVGDSEGYLHWINR 352 (394)
T ss_pred EEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-CC-EEEEEeCCCEEEEEEC
Confidence 776542 1111222 2456788888899999999999987765432211 12222222 44 45555444 5788888
Q ss_pred cCCceeeeeecccccee-EeEecCCCEEEEEEcCCeEEEEEe
Q 003445 256 EPIRCHDAVDVGWSRLS-DLNVHEGKLLGCSYNQSCVGVWVV 296 (819)
Q Consensus 256 ~~~~~~~~~~~~~s~i~-~l~~~dg~lLa~~~~Dg~V~IW~l 296 (819)
.+++...........+. .-.+.+ ..|.++..||.|..+..
T Consensus 353 ~tG~~~~~~~~~~~~~~s~P~~~~-~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 353 EDGRFVAQQKVDSSGFLSEPVVAD-DKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCCEEEEEEcCCCcceeCCEEEC-CEEEEEeCCceEEEEeC
Confidence 88877665554332222 122234 46777788998887754
No 292
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.82 E-value=6.5e-08 Score=109.84 Aligned_cols=283 Identities=17% Similarity=0.217 Sum_probs=184.7
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC-CceEEEec-CCCCCeEEEEEcCCC--CEEEEEECCCeEEEEECC--
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-PNAILSLS-GHTSGIDSVSFDSSE--VLVAAGAASGTIKLWDLE-- 89 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~-~~~i~~l~-~h~~~V~~l~fspdg--~~Lasgs~DG~I~IWDl~-- 89 (819)
.+++..+.++| .++-+|.++.-| +.+.|+.. +....-+. ...-.|-.+.|++.. .+-++......-.+|++.
T Consensus 24 ~~~~~a~si~p-~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINP-SGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeecc-ccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 45788899999 556677777766 56667644 33333333 112357778887743 455555566777899985
Q ss_pred -CCeEEEEEcCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCe-EEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003445 90 -EAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKG-CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (819)
Q Consensus 90 -s~~~i~~l~~h~~~I~sl~fsp~g~-~Lasgs~Dg~I~IwDi~t~~-~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~ 166 (819)
+..+-..+.+|...|+.+.|+|... .+++++.|..+..||++... ++..+..-......++|+.....+++.+....
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence 3345566778999999999999764 78999999999999999754 45555444556778999875555566667788
Q ss_pred EEEEECCCC-eEEEEEecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCCeEEE-EeCCCCCCeeEEEEeCCCCEEE
Q 003445 167 VKLWDLTAG-KLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIG-SAGPETSGVRCLTFNPDGRTLL 243 (819)
Q Consensus 167 I~IwDl~t~-~~i~~~~~h~~~I~sl~fspd-g~~Lasgs~Dg~I~iwDl~~~~~l~-~~~~~~~~I~sl~fspdg~~La 243 (819)
|.+||++.| .++..+++|...|+.++|... ...+.+.+.||+|++||..+..... .......+|..-.|.|-|.-..
T Consensus 182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred eEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE
Confidence 999999865 577888889999999998764 4578888899999999997643221 2233345566666666443222
Q ss_pred EE---ECCCEEEEEec---------C-CceeeeeeccccceeEeEe-----------cCCCEEEEEEcCCeEEEEEecCC
Q 003445 244 CG---LHESLKVFSWE---------P-IRCHDAVDVGWSRLSDLNV-----------HEGKLLGCSYNQSCVGVWVVDIS 299 (819)
Q Consensus 244 sg---s~d~I~Vwd~~---------~-~~~~~~~~~~~s~i~~l~~-----------~dg~lLa~~~~Dg~V~IW~ld~~ 299 (819)
.- +++.+.+++-+ + .+....+..+...+..+.+ ...-.|++-+.|..+++|.++..
T Consensus 262 ~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 262 IMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred eccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 11 11122222221 1 2223333333333322222 11346788899999999988754
Q ss_pred c
Q 003445 300 R 300 (819)
Q Consensus 300 ~ 300 (819)
=
T Consensus 342 i 342 (1081)
T KOG0309|consen 342 I 342 (1081)
T ss_pred H
Confidence 3
No 293
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.81 E-value=9.9e-08 Score=99.08 Aligned_cols=240 Identities=21% Similarity=0.340 Sum_probs=163.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----EEEEEcCCC------------CCeEEEEEecCCC--EEEEE
Q 003445 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK-----IVRTLTGHR------------SNCISVDFHPFGE--FFASG 119 (819)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~-----~i~~l~~h~------------~~I~sl~fsp~g~--~Lasg 119 (819)
...|+++.|...|.||++|...|.|.+|.-+... ....+++|. ..|..+.|..++. .|+..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4579999999999999999989999999765432 223355554 2467888876553 57777
Q ss_pred ECCCcEEEEECCCCe-------------------E------------------E-----EEE-ecCCCCeEEEEEcCCCC
Q 003445 120 SLDTNLKIWDIRKKG-------------------C------------------I-----HTY-KGHTRGVNAIRFTPDGR 156 (819)
Q Consensus 120 s~Dg~I~IwDi~t~~-------------------~------------------i-----~~~-~~h~~~I~sl~fspdg~ 156 (819)
+.|.+|++|-+.... + + +.+ ..|...|.++.|..|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 789999999876431 0 0 001 24667788999999988
Q ss_pred EEEEEECCCeEEEEECCCCe---EEEEEecCCC-----CeEEEEEeCC-CCEEEEEECCCeEEEEECCCCeEE------E
Q 003445 157 WVVSGGEDNTVKLWDLTAGK---LLHDFKCHEG-----QIQCIDFHPH-EFLLATGSADRTVKFWDLETFELI------G 221 (819)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t~~---~i~~~~~h~~-----~I~sl~fspd-g~~Lasgs~Dg~I~iwDl~~~~~l------~ 221 (819)
.++++ .|=.|.+|++.... .+..++.|.. -|++..|||. ...+.-.+..|.|++-|++...+. .
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 88776 67889999987532 2334454542 4889999996 445666667899999999842211 1
Q ss_pred E----------eCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCC-ceeeeeecc----------------ccceeEe
Q 003445 222 S----------AGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPI-RCHDAVDVG----------------WSRLSDL 274 (819)
Q Consensus 222 ~----------~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~-~~~~~~~~~----------------~s~i~~l 274 (819)
. +..-...|..+.|+++|+++++-..-++++||.... .+..+++.+ +.....-
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeis 344 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEIS 344 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEE
Confidence 1 111234688899999999999988889999998753 344433221 2222223
Q ss_pred EecCCCEEEEEEcCCeEEEEEecCC
Q 003445 275 NVHEGKLLGCSYNQSCVGVWVVDIS 299 (819)
Q Consensus 275 ~~~dg~lLa~~~~Dg~V~IW~ld~~ 299 (819)
+..+.+-+.+|+..+...|+-.+++
T Consensus 345 fSgd~~~v~sgsy~NNfgiyp~~ss 369 (460)
T COG5170 345 FSGDDKHVLSGSYSNNFGIYPTDSS 369 (460)
T ss_pred ecCCcccccccccccceeeeccccC
Confidence 3356677777777777777765443
No 294
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.80 E-value=1.5e-07 Score=99.22 Aligned_cols=251 Identities=18% Similarity=0.314 Sum_probs=181.8
Q ss_pred CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC-CCCeEEEEEc-CCCCCeEEEEEecCCCEEEEEECCCcEE
Q 003445 49 PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL-EEAKIVRTLT-GHRSNCISVDFHPFGEFFASGSLDTNLK 126 (819)
Q Consensus 49 ~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl-~s~~~i~~l~-~h~~~I~sl~fsp~g~~Lasgs~Dg~I~ 126 (819)
...+..++||.+.|++...-|...-+++.+.|.++++|-- +.++.-..+. ....+++++.+.+....|++|-..|++.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 4455677899999999998888888999999999999953 4455444433 2356889999999999999999999999
Q ss_pred EEEC----CCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEE
Q 003445 127 IWDI----RKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLAT 202 (819)
Q Consensus 127 IwDi----~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Las 202 (819)
-+.+ +....++.+..|...+..+.|+-...++++.+.|..+.-.-.+.+..+..+.- ....+++.|.-. +...
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fv 170 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFV 170 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEe
Confidence 8854 44556677788999999999999899999999998766555555544332221 111122222211 5556
Q ss_pred EECCCeEEEEEC--CCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeee-eccccceeEeEe-c
Q 003445 203 GSADRTVKFWDL--ETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV-DVGWSRLSDLNV-H 277 (819)
Q Consensus 203 gs~Dg~I~iwDl--~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~-~~~~s~i~~l~~-~ 277 (819)
|...|.|..-.+ ....++..+.+|.+.+++++|.+....|++|..+ .+.+||+-..+..... ..+...+..+.. .
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~ 250 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ 250 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence 666666655444 4566788899999999999999999999998776 6999999766554432 222233333332 3
Q ss_pred CCCEEEEEEcCCeEEEEEecCCcee
Q 003445 278 EGKLLGCSYNQSCVGVWVVDISRIE 302 (819)
Q Consensus 278 dg~lLa~~~~Dg~V~IW~ld~~~~~ 302 (819)
--+.+.++..||.|.+|+++..+.+
T Consensus 251 ~t~~l~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 251 HTRQLISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred hheeeeeccCCCeEEEEeccceeec
Confidence 3478889999999999999988765
No 295
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.77 E-value=3.3e-06 Score=95.81 Aligned_cols=266 Identities=11% Similarity=0.021 Sum_probs=160.4
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCC-Ce-E-----EEEEcC--CCCEEEEEECCCeEEEEECCCCeEEEEEcCCC
Q 003445 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTS-GI-D-----SVSFDS--SEVLVAAGAASGTIKLWDLEEAKIVRTLTGHR 101 (819)
Q Consensus 31 ~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~-~V-~-----~l~fsp--dg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~ 101 (819)
.+++++.+|.|.-+|..+++.+........ .+ . .+.-.| ++..++.++.+|.+..+|.++|+.+.......
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 567777889999999999999887653221 00 0 000011 34567778889999999999999877665432
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEE-EEEcC--CCCEEEEEECCCeEEEEECCCCeEE
Q 003445 102 SNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNA-IRFTP--DGRWVVSGGEDNTVKLWDLTAGKLL 178 (819)
Q Consensus 102 ~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~s-l~fsp--dg~~L~sgs~Dg~I~IwDl~t~~~i 178 (819)
....+... .+..+++++.+|.|+.+|..+++.+..+......+.. ..-+| .+..++.++.+|.+..+|..+|+.+
T Consensus 151 ~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~ 228 (394)
T PRK11138 151 EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLI 228 (394)
T ss_pred ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhh
Confidence 21111112 2456777888999999999999999887643111100 00112 2345777888999999999999877
Q ss_pred EEEecCCC-------CeEEEEEeC--CCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCC
Q 003445 179 HDFKCHEG-------QIQCIDFHP--HEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHES 249 (819)
Q Consensus 179 ~~~~~h~~-------~I~sl~fsp--dg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~ 249 (819)
..+..... ....+..+| .+..++.++.+|.+..+|..+|+.+...... ....+... ++..++...++.
T Consensus 229 W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~~-~~~vy~~~~~g~ 305 (394)
T PRK11138 229 WQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAVD-GGRIYLVDQNDR 305 (394)
T ss_pred heeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEEE-CCEEEEEcCCCe
Confidence 66542110 011111222 2456777778999999999999887654322 11222221 333333444445
Q ss_pred EEEEEecCCceeeeeec-cccceeEeEecCCCEEEEEEcCCeEEEEEecCCcee
Q 003445 250 LKVFSWEPIRCHDAVDV-GWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIE 302 (819)
Q Consensus 250 I~Vwd~~~~~~~~~~~~-~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~ 302 (819)
+..++.++++..-.... ........... +..+..+..+|.|.+.|.+++++.
T Consensus 306 l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 306 VYALDTRGGVELWSQSDLLHRLLTAPVLY-NGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred EEEEECCCCcEEEcccccCCCcccCCEEE-CCEEEEEeCCCEEEEEECCCCCEE
Confidence 77777766654322111 11111122223 455667788999999999888764
No 296
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.72 E-value=1.3e-07 Score=96.30 Aligned_cols=195 Identities=21% Similarity=0.299 Sum_probs=124.4
Q ss_pred EEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceE------------EEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI------------LSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 19 V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i------------~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
|+.+.+. ....|+++..++.+.......+.+. +.+..|.++-.+-+.+--+.-+++++.||.+.++
T Consensus 39 ~~~~~~v--~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLS--AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeech--hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 5566665 4556888888877776665443332 2233333333333333345678999999999999
Q ss_pred ECCCCeE-EEEEcC-CCCCeEEEEEecCCCEEEEEE-----CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC-CCEE
Q 003445 87 DLEEAKI-VRTLTG-HRSNCISVDFHPFGEFFASGS-----LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD-GRWV 158 (819)
Q Consensus 87 Dl~s~~~-i~~l~~-h~~~I~sl~fsp~g~~Lasgs-----~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspd-g~~L 158 (819)
+.+.... ...+.. |.+ -.+.++...++++.++. .-+..++|+++..+.+..-+.-...|.+++-+|. .+.+
T Consensus 117 s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v 195 (319)
T KOG4714|consen 117 STDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLV 195 (319)
T ss_pred echHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEE
Confidence 9764211 111111 111 12223333455555443 2345777887755443322222344999999994 5567
Q ss_pred EEEECCCeEEEEECCCCeE-EEEEecCCCCeEEEEEeC-CCCEEEEEECCCeEEEEECCC
Q 003445 159 VSGGEDNTVKLWDLTAGKL-LHDFKCHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLET 216 (819)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~-i~~~~~h~~~I~sl~fsp-dg~~Lasgs~Dg~I~iwDl~~ 216 (819)
++|+.||.+-+||.+.... ...++.|..+|+.+.||| ++..|+++++||.+..||..+
T Consensus 196 ~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 196 CCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 7888999999999998743 334567999999999999 478999999999999999875
No 297
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.70 E-value=5.3e-05 Score=80.01 Aligned_cols=213 Identities=16% Similarity=0.114 Sum_probs=139.5
Q ss_pred EEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEe-cCCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 003445 63 DSVSFDS-SEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFH-PFGEFFASGSLDTNLKIWDIRKKGCIHTYK 140 (819)
Q Consensus 63 ~~l~fsp-dg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fs-p~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~ 140 (819)
.++.|.+ ++.++++--..+.|+.|+..+++...... .. ...+++. ++ ..|+.+..+ .+.++|..+++......
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-~~--~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-PG--PNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-SS--EEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-CC--CceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEEEee
Confidence 4678988 66677776678999999999887644222 22 6677787 55 455555554 46666998886544433
Q ss_pred c-----CCCCeEEEEEcCCCCEEEEEECC--------CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEE-EEECC
Q 003445 141 G-----HTRGVNAIRFTPDGRWVVSGGED--------NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLA-TGSAD 206 (819)
Q Consensus 141 ~-----h~~~I~sl~fspdg~~L~sgs~D--------g~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~La-sgs~D 206 (819)
. .....+.+++.++|++.++.... |.|..++.. ++...... .-...+.|+|+|+++.|+ +-+..
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccccc
Confidence 2 33567899999999977765543 668888887 55444433 345578999999998776 55677
Q ss_pred CeEEEEECCC--C-----eEEEEeCCCCCCeeEEEEeCCCCEEEEEEC-CCEEEEEecCCceeeeeeccccceeEeEe--
Q 003445 207 RTVKFWDLET--F-----ELIGSAGPETSGVRCLTFNPDGRTLLCGLH-ESLKVFSWEPIRCHDAVDVGWSRLSDLNV-- 276 (819)
Q Consensus 207 g~I~iwDl~~--~-----~~l~~~~~~~~~I~sl~fspdg~~Lasgs~-d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-- 276 (819)
+.|..|++.. . +.+..+....+..-.+++..+|++.++... +.|.+|+-+ ++....+.......+.+.+
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg 234 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGG 234 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEES
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEEC
Confidence 8899999853 2 122223333334788999999987776654 458888866 7777777766556666655
Q ss_pred cCCCEEE
Q 003445 277 HEGKLLG 283 (819)
Q Consensus 277 ~dg~lLa 283 (819)
++.+.|.
T Consensus 235 ~~~~~L~ 241 (246)
T PF08450_consen 235 PDGKTLY 241 (246)
T ss_dssp TTSSEEE
T ss_pred CCCCEEE
Confidence 3444443
No 298
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.69 E-value=4e-07 Score=94.68 Aligned_cols=230 Identities=20% Similarity=0.335 Sum_probs=156.0
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc-----eEEEecCCC------------CCeEEEEEcCCC--CEEEE
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-----AILSLSGHT------------SGIDSVSFDSSE--VLVAA 76 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~-----~i~~l~~h~------------~~V~~l~fspdg--~~Las 76 (819)
.+.|+++.|.. .|.||++|...|.|.+|.-+... ....+.+|. ..|..+.|..++ ..++.
T Consensus 26 ad~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 46799999997 78899999999999999754322 122344443 458889996654 35556
Q ss_pred EECCCeEEEEECCCC-------------------------------------eEE-----EEE-cCCCCCeEEEEEecCC
Q 003445 77 GAASGTIKLWDLEEA-------------------------------------KIV-----RTL-TGHRSNCISVDFHPFG 113 (819)
Q Consensus 77 gs~DG~I~IWDl~s~-------------------------------------~~i-----~~l-~~h~~~I~sl~fsp~g 113 (819)
.+.|.+|++|.+... +.+ +.+ ..|.-.|.++.|..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 678999999987422 001 111 3466678889999888
Q ss_pred CEEEEEECCCcEEEEECCCCe---EEEEEecCC-----CCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeE------E
Q 003445 114 EFFASGSLDTNLKIWDIRKKG---CIHTYKGHT-----RGVNAIRFTPD-GRWVVSGGEDNTVKLWDLTAGKL------L 178 (819)
Q Consensus 114 ~~Lasgs~Dg~I~IwDi~t~~---~i~~~~~h~-----~~I~sl~fspd-g~~L~sgs~Dg~I~IwDl~t~~~------i 178 (819)
..++++ .|=.|.+|++.-.. .+..++.|. .-|++..|+|. ...+...+..|.|++-|++.... +
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 878776 46789999886432 233445554 34788899994 44566677899999999984321 1
Q ss_pred EE----------EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC-eEEEEeCCC------------CCCe---eE
Q 003445 179 HD----------FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF-ELIGSAGPE------------TSGV---RC 232 (819)
Q Consensus 179 ~~----------~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~-~~l~~~~~~------------~~~I---~s 232 (819)
.. |..-...|..+.|+++|+++++-+. -+|++||+... .++.++..| ...| ..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 11 1112346888999999999998764 58999999864 455555333 2233 34
Q ss_pred EEEeCCCCEEEEEECC
Q 003445 233 LTFNPDGRTLLCGLHE 248 (819)
Q Consensus 233 l~fspdg~~Lasgs~d 248 (819)
+.|+.|.+.+.+|+..
T Consensus 343 isfSgd~~~v~sgsy~ 358 (460)
T COG5170 343 ISFSGDDKHVLSGSYS 358 (460)
T ss_pred EEecCCcccccccccc
Confidence 7788888888888654
No 299
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.67 E-value=2.9e-05 Score=83.22 Aligned_cols=226 Identities=16% Similarity=0.144 Sum_probs=160.0
Q ss_pred EEEEEEeeCCCcEEEEEeCCCe-EEEEECCCCceEEEecCCCCC--eEEEEEcCCCCEEEEEEC-----CCeEEEEECC-
Q 003445 19 VNCLKIGRKSSRVLVTGGEDHK-VNLWAIGKPNAILSLSGHTSG--IDSVSFDSSEVLVAAGAA-----SGTIKLWDLE- 89 (819)
Q Consensus 19 V~~lafsp~~~~~Latgs~Dg~-V~IWdl~~~~~i~~l~~h~~~--V~~l~fspdg~~Lasgs~-----DG~I~IWDl~- 89 (819)
...++.+|.....++.+-.-|+ ..+||..+++....+....+. --.-.|++||++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 3457788877777888877664 678999999888777643332 124689999999998643 4899999998
Q ss_pred CCeEEEEEcCCCCCeEEEEEecCCCEEEEEEC------------------CCcEEEEECCCCeEEEEEe----cCCCCeE
Q 003445 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSL------------------DTNLKIWDIRKKGCIHTYK----GHTRGVN 147 (819)
Q Consensus 90 s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~------------------Dg~I~IwDi~t~~~i~~~~----~h~~~I~ 147 (819)
+.+.+..+..|.-.-..+.+.|+|+.|+++.. +.++.+.|..+++.+.... .|...|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 66788888877666677889999987777631 2356677888888776633 3777899
Q ss_pred EEEEcCCCCEEEEEECCC-------eEEEEECCCCeEEEEEe-------cCCCCeEEEEEeCCCCEEEEEE-CCCeEEEE
Q 003445 148 AIRFTPDGRWVVSGGEDN-------TVKLWDLTAGKLLHDFK-------CHEGQIQCIDFHPHEFLLATGS-ADRTVKFW 212 (819)
Q Consensus 148 sl~fspdg~~L~sgs~Dg-------~I~IwDl~t~~~i~~~~-------~h~~~I~sl~fspdg~~Lasgs-~Dg~I~iw 212 (819)
.+++.++|..++..=..| -|-+++. ++.+..+. ...+-+-+|++++++.++++.+ ..+.+.+|
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 999999987666543333 2444443 33233332 2345688999999998776655 57789999
Q ss_pred ECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCC
Q 003445 213 DLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHES 249 (819)
Q Consensus 213 Dl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~ 249 (819)
|..++..+...... .+..++-.+++ +++++..+.
T Consensus 245 d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 245 DAATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred ECCCCCEeeccccC--ceeeeeecCCc-eEEeCCCcc
Confidence 99999988776543 35777777776 555554443
No 300
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.67 E-value=2.7e-07 Score=99.29 Aligned_cols=161 Identities=18% Similarity=0.307 Sum_probs=117.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCe----EEEEEcCCCCCeEEEEEecCCCEEEEEECCC---cEEEEECCCC
Q 003445 61 GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK----IVRTLTGHRSNCISVDFHPFGEFFASGSLDT---NLKIWDIRKK 133 (819)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~----~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg---~I~IwDi~t~ 133 (819)
.+..+..++++++||++..+....++++.... .+.... -...-.++.|..+......+..-| .+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 34556678899999999888887788775433 232222 233345566666666555554444 4555555544
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEeCCCCEEEEEECCCeEEEE
Q 003445 134 GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK-CHEGQIQCIDFHPHEFLLATGSADRTVKFW 212 (819)
Q Consensus 134 ~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~-~h~~~I~sl~fspdg~~Lasgs~Dg~I~iw 212 (819)
.+. .+-+|-+.+..++|+||+++|+++..|..|++-....--.+..|- +|..-|..++.-++. .|++|+.|++|++|
T Consensus 143 ~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 143 RCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLW 220 (390)
T ss_pred Ccc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEE
Confidence 443 344799999999999999999999999999998877665666554 589999999987664 58999999999999
Q ss_pred ECCCCeEEEEeC
Q 003445 213 DLETFELIGSAG 224 (819)
Q Consensus 213 Dl~~~~~l~~~~ 224 (819)
|+.+|+.+..+.
T Consensus 221 d~~sgk~L~t~d 232 (390)
T KOG3914|consen 221 DITSGKLLDTCD 232 (390)
T ss_pred ecccCCcccccc
Confidence 999999887654
No 301
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.65 E-value=3e-07 Score=98.98 Aligned_cols=158 Identities=19% Similarity=0.326 Sum_probs=112.7
Q ss_pred EEEEeeCCCcEEEEEeCCCeEEEEECCCCce----EEEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeE
Q 003445 21 CLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA----ILSLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEEAKI 93 (819)
Q Consensus 21 ~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~----i~~l~~h~~~V~~l~fspdg~~Lasgs~D---G~I~IWDl~s~~~ 93 (819)
.+..++ ++++||++..+....++++..... +.... -...-+++.|..+...+..+..- ..+.+|....+..
T Consensus 67 ~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 67 LVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 334454 788899888887776776643322 22222 23344555565555555554444 4455555554433
Q ss_pred EEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE-ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003445 94 VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDL 172 (819)
Q Consensus 94 i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~-~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl 172 (819)
..+.||-+.++.|+|+||+++++++..|..|++-....--.+..+ -+|...|..++..++ ..|++|+.|++|++||+
T Consensus 145 -~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 145 -EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDI 222 (390)
T ss_pred -chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEec
Confidence 445689999999999999999999999999999877665555554 469999999999864 56899999999999999
Q ss_pred CCCeEEEEEe
Q 003445 173 TAGKLLHDFK 182 (819)
Q Consensus 173 ~t~~~i~~~~ 182 (819)
.+|+.+.++.
T Consensus 223 ~sgk~L~t~d 232 (390)
T KOG3914|consen 223 TSGKLLDTCD 232 (390)
T ss_pred ccCCcccccc
Confidence 9999987765
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=1.7e-07 Score=98.80 Aligned_cols=159 Identities=15% Similarity=0.265 Sum_probs=124.5
Q ss_pred EEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-----eEEEEEecCCCCeEEE
Q 003445 75 AAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-----GCIHTYKGHTRGVNAI 149 (819)
Q Consensus 75 asgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~-----~~i~~~~~h~~~I~sl 149 (819)
++.+.+..|-+-|+++|.. +.|. ..+.|.++.|...+++++.|+.+|.|..+|++.+ .+.+.+. |.+.|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence 3445677788889888754 3344 6678999999998999999999999999999864 3455554 88899999
Q ss_pred EEcC-CCCEEEEEECCCeEEEEECCCCeE---EEEEecCCCCeEE--EEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 003445 150 RFTP-DGRWVVSGGEDNTVKLWDLTAGKL---LHDFKCHEGQIQC--IDFHPHEFLLATGSADRTVKFWDLETFELIGSA 223 (819)
Q Consensus 150 ~fsp-dg~~L~sgs~Dg~I~IwDl~t~~~---i~~~~~h~~~I~s--l~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~ 223 (819)
.... ++.+|++.+.+|.|++||++.-++ +.++.+|...-.- +..++.+..+++++.|...+||.++.++++.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 8776 788999999999999999998776 8888887654333 344566778888999999999999999999887
Q ss_pred CCCC----CCeeEEEEe
Q 003445 224 GPET----SGVRCLTFN 236 (819)
Q Consensus 224 ~~~~----~~I~sl~fs 236 (819)
.... ..+.+++|.
T Consensus 385 pf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 385 PFPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCCccccccccceehh
Confidence 5442 245566664
No 303
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.62 E-value=3.7e-05 Score=78.86 Aligned_cols=116 Identities=17% Similarity=0.153 Sum_probs=88.3
Q ss_pred EEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCC
Q 003445 23 KIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRS 102 (819)
Q Consensus 23 afsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~ 102 (819)
...++...+++.|+..+.+.--|..+|+.+.... -...|.+-+.- -|++++.|+..|.+++.+..+|.....+.....
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence 3445677899999999999999999998887644 23334443332 467899999999999999999987777664332
Q ss_pred CeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 003445 103 NCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK 140 (819)
Q Consensus 103 ~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~ 140 (819)
--......+++..+..|+.|++.+..|.++..++...+
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 22233456678999999999999999999988887755
No 304
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.59 E-value=5.8e-06 Score=84.87 Aligned_cols=250 Identities=14% Similarity=0.112 Sum_probs=155.4
Q ss_pred eCCCeEEEEECCCCc-eEEEecCCCCCeEEEEEcC-----CCCEEEEEECCCeEEEEECCCCeEE-EEEcCCCCCeEEEE
Q 003445 36 GEDHKVNLWAIGKPN-AILSLSGHTSGIDSVSFDS-----SEVLVAAGAASGTIKLWDLEEAKIV-RTLTGHRSNCISVD 108 (819)
Q Consensus 36 s~Dg~V~IWdl~~~~-~i~~l~~h~~~V~~l~fsp-----dg~~Lasgs~DG~I~IWDl~s~~~i-~~l~~h~~~I~sl~ 108 (819)
+....+.+|++-+.. .+..+. ..+.|.| ...+|+.|+..|...+|...+.+.. +....|...|.-+.
T Consensus 49 ~~t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~ 122 (344)
T KOG4532|consen 49 SKTISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK 122 (344)
T ss_pred cceeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence 344567788774332 222222 3355544 4568999999999999999866533 23333433332211
Q ss_pred EecC-CCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEE--EecC
Q 003445 109 FHPF-GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG-KLLHD--FKCH 184 (819)
Q Consensus 109 fsp~-g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~-~~i~~--~~~h 184 (819)
=..+ .-.+..++.|.++++.++..+..........-.+.++.+++|++|+++.+....|..|.+... +.+.. ....
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t 202 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT 202 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc
Confidence 1111 224667778888888887654333222211233789999999999999999999999988643 22222 1223
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEE-----eCCCCCCeeEEEEeCCCC--EEEEE-ECCCEEEEEec
Q 003445 185 EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS-----AGPETSGVRCLTFNPDGR--TLLCG-LHESLKVFSWE 256 (819)
Q Consensus 185 ~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~-----~~~~~~~I~sl~fspdg~--~Lasg-s~d~I~Vwd~~ 256 (819)
...-.+..|+.....+|++..||++.|||++....... -..|.+.++.+.|++.|. +|+.. ....+.|.|..
T Consensus 203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 33446788999999999999999999999987543322 245788999999998664 23333 33458999998
Q ss_pred CCceeeeeeccccceeEeEecCCC-EEEEEEcCCeEEEE
Q 003445 257 PIRCHDAVDVGWSRLSDLNVHEGK-LLGCSYNQSCVGVW 294 (819)
Q Consensus 257 ~~~~~~~~~~~~s~i~~l~~~dg~-lLa~~~~Dg~V~IW 294 (819)
+.+.++.+-..... ...|+.+ ++.+.+.+..=.++
T Consensus 283 ~~~~~q~I~i~~d~---~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 283 NYVNHQVIVIPDDV---ERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred cCceeeEEecCccc---cccccccccccccccCCCcccc
Confidence 88776655333221 1223333 55555555333333
No 305
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.57 E-value=6.3e-05 Score=80.63 Aligned_cols=222 Identities=14% Similarity=0.153 Sum_probs=155.8
Q ss_pred eEEEEEcC-CCCEEEEEECCC-eEEEEECCCCeEEEEEcCCCCCeE--EEEEecCCCEEEEEEC-----CCcEEEEECC-
Q 003445 62 IDSVSFDS-SEVLVAAGAASG-TIKLWDLEEAKIVRTLTGHRSNCI--SVDFHPFGEFFASGSL-----DTNLKIWDIR- 131 (819)
Q Consensus 62 V~~l~fsp-dg~~Lasgs~DG-~I~IWDl~s~~~i~~l~~h~~~I~--sl~fsp~g~~Lasgs~-----Dg~I~IwDi~- 131 (819)
...++.+| ....++.+-.-| ...+||..+++....+....+.-. .-.|+++|++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 45677888 555666666655 467899999998877764333221 4579999999988643 5789999998
Q ss_pred CCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC------------------CCeEEEEECCCCeEEEEEec----CCCCeE
Q 003445 132 KKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE------------------DNTVKLWDLTAGKLLHDFKC----HEGQIQ 189 (819)
Q Consensus 132 t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~------------------Dg~I~IwDl~t~~~i~~~~~----h~~~I~ 189 (819)
+-..+..+..|.-.-..+.+.|||+.|+.+.- +..|.+.|..+|+.+.+... |.-.|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 66778888888877788999999988887631 24567778889998877443 677899
Q ss_pred EEEEeCCCCEEEEEECCCe-------EEEEECCCCeEEEEe-------CCCCCCeeEEEEeCCCCEEEEEECC--CEEEE
Q 003445 190 CIDFHPHEFLLATGSADRT-------VKFWDLETFELIGSA-------GPETSGVRCLTFNPDGRTLLCGLHE--SLKVF 253 (819)
Q Consensus 190 sl~fspdg~~Lasgs~Dg~-------I~iwDl~~~~~l~~~-------~~~~~~I~sl~fspdg~~Lasgs~d--~I~Vw 253 (819)
.+++.++|..++..-..|. |.+++... .+..+ ....+.+-+|+++.+|.++++++-. .+.+|
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 9999999987777655442 44444333 22222 2235679999999999999888765 48899
Q ss_pred EecCCceeeeeeccccceeEeEecCCCEEEEEEc
Q 003445 254 SWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYN 287 (819)
Q Consensus 254 d~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~ 287 (819)
|..+++........ ....+....+.++++++.
T Consensus 245 d~~tg~~~~~~~l~--D~cGva~~~~~f~~ssG~ 276 (305)
T PF07433_consen 245 DAATGRLLGSVPLP--DACGVAPTDDGFLVSSGQ 276 (305)
T ss_pred ECCCCCEeeccccC--ceeeeeecCCceEEeCCC
Confidence 99998887665433 223444444455554444
No 306
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.51 E-value=1.9e-06 Score=100.61 Aligned_cols=180 Identities=22% Similarity=0.327 Sum_probs=142.7
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEE
Q 003445 70 SEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI 149 (819)
Q Consensus 70 dg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl 149 (819)
+...++.|+....+..+|+.+.+..+......+.|.-+.. +++++.+|...|+|.+-|.++.+.++++..|.+.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 3456777888888999999999988877765555665555 47899999999999999999999999999999999877
Q ss_pred EEcCCCCEEEEEEC---------CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCC---
Q 003445 150 RFTPDGRWVVSGGE---------DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLET--- 216 (819)
Q Consensus 150 ~fspdg~~L~sgs~---------Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspd-g~~Lasgs~Dg~I~iwDl~~--- 216 (819)
... |+.|++++. |..|+|||++.-+.+.-+..+.++ .-+.|+|. ...+++.+..|...+.|..+
T Consensus 224 Dv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 665 889998875 456899999988776666555444 56778886 56788888899999999433
Q ss_pred C-eEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEE
Q 003445 217 F-ELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFS 254 (819)
Q Consensus 217 ~-~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd 254 (819)
- .-+..+.+....+..+.++++|+.|+.|..+ .|.+|.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2 2233455566679999999999999999665 589997
No 307
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=3.3e-07 Score=96.68 Aligned_cols=184 Identities=20% Similarity=0.296 Sum_probs=132.5
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (819)
.+.+..|+....+ .++|+-.-.-+-++.+.+-.|-+-|++++.... |. ..+.|.++.|...+.++..|+.+|.|..
T Consensus 203 ~~~~~SlQi~~a~--~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcRngeI~~ 278 (425)
T KOG2695|consen 203 NYMLCSLQIPKAW--SCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFV 278 (425)
T ss_pred CCceeeecCCcch--hhhhhhccceeeecccccceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEecccCCcEEE
Confidence 3445555554432 236654222222445556678888887765433 22 5678999999999999999999999999
Q ss_pred EECCCC-----eEEEEEcCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeE---EEEEecCCCCeEEE--EEcCC
Q 003445 86 WDLEEA-----KIVRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGC---IHTYKGHTRGVNAI--RFTPD 154 (819)
Q Consensus 86 WDl~s~-----~~i~~l~~h~~~I~sl~fsp-~g~~Lasgs~Dg~I~IwDi~t~~~---i~~~~~h~~~I~sl--~fspd 154 (819)
+|++.. .+.+.+. |.+.|+++..-. ++++|++.+.+|.|++||++--++ +.++.+|-..-.-+ -..+.
T Consensus 279 iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~e 357 (425)
T KOG2695|consen 279 IDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEE 357 (425)
T ss_pred EEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccc
Confidence 999754 3444444 888899887765 678999999999999999997777 88899886543333 33456
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEecCCC----CeEEEEEe
Q 003445 155 GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEG----QIQCIDFH 194 (819)
Q Consensus 155 g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~----~I~sl~fs 194 (819)
...++++++|...+||.++.|..+.++..... .+.+++|.
T Consensus 358 eg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 358 EGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 67889999999999999999999888764322 34455553
No 308
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=3.9e-08 Score=113.22 Aligned_cols=202 Identities=18% Similarity=0.303 Sum_probs=155.3
Q ss_pred CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCC--cEE
Q 003445 49 PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT--NLK 126 (819)
Q Consensus 49 ~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg--~I~ 126 (819)
.+....+..|+...+|++|+.+.++|+.|+..|.|++|++.+|.......+|...|+.+.-+.+|..+++.+.-. -..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 345566778899999999999999999999999999999999999999999999999999999998766655433 467
Q ss_pred EEECCC-CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE-ec---CCCCeEEEEEeCCCCEEE
Q 003445 127 IWDIRK-KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF-KC---HEGQIQCIDFHPHEFLLA 201 (819)
Q Consensus 127 IwDi~t-~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~-~~---h~~~I~sl~fspdg~~La 201 (819)
+|++.. +...++|.+ -.++.|+..-..-+.|+......+||+.++..+.++ .+ ....-++..|+|+..+++
T Consensus 1171 LW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 899863 445555542 457888875555566666678899999998776653 21 223347889999988776
Q ss_pred EEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeeee
Q 003445 202 TGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAV 264 (819)
Q Consensus 202 sgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~ 264 (819)
- || .+||++..+.++.+..... -..-.|+|.|.-++..+ .|||+.+.+.+..+
T Consensus 1247 n---dG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1247 N---DG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred e---Cc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec----hhhhhHHHHHHhcC
Confidence 4 55 5899998887777765542 23446999999988765 69999988776554
No 309
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.50 E-value=3.7e-07 Score=103.89 Aligned_cols=205 Identities=24% Similarity=0.352 Sum_probs=149.0
Q ss_pred EEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc-eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (819)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~-~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (819)
-+.+|+..|+.+-|+|+...++++++.|-.+..||+.... .+..+..-...-..++|+-..-.+.+.+....|.+||+.
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r 188 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR 188 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence 3568999999999999999999999999999999997654 445555445567889998755555555777889999998
Q ss_pred CC-eEEEEEcCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCeE--EEEEecCCCCeEEEEEcCCCCEEEE--EEC
Q 003445 90 EA-KIVRTLTGHRSNCISVDFHPF-GEFFASGSLDTNLKIWDIRKKGC--IHTYKGHTRGVNAIRFTPDGRWVVS--GGE 163 (819)
Q Consensus 90 s~-~~i~~l~~h~~~I~sl~fsp~-g~~Lasgs~Dg~I~IwDi~t~~~--i~~~~~h~~~I~sl~fspdg~~L~s--gs~ 163 (819)
.| .++..+++|...|..++|... ...+.+.+.||+|++||...... .++. ....+|+.-+|.|-|+-.++ --.
T Consensus 189 ~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v-tt~~piw~~r~~Pfg~g~~~mp~~G 267 (1081)
T KOG0309|consen 189 KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV-TTNFPIWRGRYLPFGEGYCIMPMVG 267 (1081)
T ss_pred CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec-cccCcceeccccccCceeEeccccC
Confidence 65 577889999999999999753 23688899999999999875432 2222 23456777777774432221 111
Q ss_pred CCeEEEEECC---------C-CeEEEEEecCCCCeEEEEEeC----------CCCEEEEEECCCeEEEEECCC
Q 003445 164 DNTVKLWDLT---------A-GKLLHDFKCHEGQIQCIDFHP----------HEFLLATGSADRTVKFWDLET 216 (819)
Q Consensus 164 Dg~I~IwDl~---------t-~~~i~~~~~h~~~I~sl~fsp----------dg~~Lasgs~Dg~I~iwDl~~ 216 (819)
+..+.+++.+ + .+.++.|.+|...|....|-. ....|++-+.|.++++|-+.+
T Consensus 268 ~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 268 GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 2234444433 2 357899999998887666643 234799999999999998764
No 310
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.50 E-value=5.5e-07 Score=91.89 Aligned_cols=166 Identities=16% Similarity=0.240 Sum_probs=105.0
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEE-EecCCCCCeEEEEEcCCCCEEEEEEC-----CC
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL-SLSGHTSGIDSVSFDSSEVLVAAGAA-----SG 81 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~-~l~~h~~~V~~l~fspdg~~Lasgs~-----DG 81 (819)
++..|..|+++--+-+.+- .+.-+++++.||.+.+++.+.-..+. .+......-.+.++...+.++.++.. -+
T Consensus 81 ~~~~~a~~sep~p~~~~s~-~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTM-TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred ceeeeeccCCCCCcccccc-cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence 3444445554433333333 33458999999999999875421111 11111111222333344555544321 24
Q ss_pred eEEEEECCCCeEEEEEcCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCeE-EEEEecCCCCeEEEEEcC-CCCEE
Q 003445 82 TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGC-IHTYKGHTRGVNAIRFTP-DGRWV 158 (819)
Q Consensus 82 ~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~-~Lasgs~Dg~I~IwDi~t~~~-i~~~~~h~~~I~sl~fsp-dg~~L 158 (819)
..+.|+++..+....-......|.+++-+|..+ .+++|+.||.+-+||.+.... ...++.|+.+|+.+-|+| ++..|
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 456666654433222122233488999999655 677888999999999998743 345678999999999999 77899
Q ss_pred EEEECCCeEEEEECCC
Q 003445 159 VSGGEDNTVKLWDLTA 174 (819)
Q Consensus 159 ~sgs~Dg~I~IwDl~t 174 (819)
+++++||.+..||..+
T Consensus 240 ft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST 255 (319)
T ss_pred eEecCCCcEEEEcCCC
Confidence 9999999999999874
No 311
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.50 E-value=2e-06 Score=100.31 Aligned_cols=180 Identities=17% Similarity=0.267 Sum_probs=139.7
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEE
Q 003445 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVD 108 (819)
Q Consensus 29 ~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~ 108 (819)
...++.|+-...+..+|+.+.+......-....|.-+. .+++++.+|...|+|.+-|..+.+.++++..|.+.|..++
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 34566777777788889888877776665454565555 4688999999999999999999999999999999998766
Q ss_pred EecCCCEEEEEEC---------CCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEE---CCCC
Q 003445 109 FHPFGEFFASGSL---------DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWD---LTAG 175 (819)
Q Consensus 109 fsp~g~~Lasgs~---------Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fsp-dg~~L~sgs~Dg~I~IwD---l~t~ 175 (819)
.+ |+.|++++. |.-|++||+|..+.+.-+.-+.++ .-+.|+| -...+++++..|...+.| +.+.
T Consensus 225 v~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 225 VQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred cc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence 64 899999875 456899999988776666544443 4567888 345788888999999999 3333
Q ss_pred e-EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEE
Q 003445 176 K-LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWD 213 (819)
Q Consensus 176 ~-~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwD 213 (819)
. -+..+......+..+++++++..|+.|..+|.|.+|-
T Consensus 302 ~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 302 PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 1 2233333445599999999999999999999999997
No 312
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=7.9e-06 Score=88.11 Aligned_cols=246 Identities=12% Similarity=0.117 Sum_probs=154.8
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCC-CEEEEEECCCeEEE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSE-VLVAAGAASGTIKL 85 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg-~~Lasgs~DG~I~I 85 (819)
..++-+.+|...|..++|+|....++..++.+.+|+|.|+.+...+..+..| ..+++++|+-|+ ++|++|...|.|.+
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 3455677888999999999977778999999999999999999999998887 789999998765 58889999999999
Q ss_pred EECCCCe-EEEEEcC--CCCCeEEEEEe------cCCCEEEEEECCCcEEEEECCC----CeEEEEEecCCCCeEEEEEc
Q 003445 86 WDLEEAK-IVRTLTG--HRSNCISVDFH------PFGEFFASGSLDTNLKIWDIRK----KGCIHTYKGHTRGVNAIRFT 152 (819)
Q Consensus 86 WDl~s~~-~i~~l~~--h~~~I~sl~fs------p~g~~Lasgs~Dg~I~IwDi~t----~~~i~~~~~h~~~I~sl~fs 152 (819)
||++..+ .+..+.+ ...+|..++.- +.|.+++....+ +..|++.- ..++..+. ..+.+.++++.
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~pG~cismqy~ 339 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-PPGICISMQYH 339 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-CCcceeeeeec
Confidence 9997543 2222222 22344444432 234444444432 55665532 22222222 24456666676
Q ss_pred CCCCEEEEEECC-C---e----EEEEECCCCeEEEEEe-cC-CCC---e--EEEEE-eCCCCEE-EEEECCCeEEEEECC
Q 003445 153 PDGRWVVSGGED-N---T----VKLWDLTAGKLLHDFK-CH-EGQ---I--QCIDF-HPHEFLL-ATGSADRTVKFWDLE 215 (819)
Q Consensus 153 pdg~~L~sgs~D-g---~----I~IwDl~t~~~i~~~~-~h-~~~---I--~sl~f-spdg~~L-asgs~Dg~I~iwDl~ 215 (819)
+-.+.++..... . + +--.|..+|..+...+ .+ .+. + ....+ .++.+++ ..|...+.+.+||..
T Consensus 340 ~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~ 419 (463)
T KOG1645|consen 340 GVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPH 419 (463)
T ss_pred CccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccc
Confidence 644554443322 1 0 1112333343333221 11 110 0 11112 2333444 445566789999999
Q ss_pred CCeEEEEeCCCCCCeeEEEEeC--CCCEEEEEECCCEEEEEecC
Q 003445 216 TFELIGSAGPETSGVRCLTFNP--DGRTLLCGLHESLKVFSWEP 257 (819)
Q Consensus 216 ~~~~l~~~~~~~~~I~sl~fsp--dg~~Lasgs~d~I~Vwd~~~ 257 (819)
+++.++.+... .+|.+++... .+.+|++-+++.++||.|+.
T Consensus 420 s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 420 SFEVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNES 462 (463)
T ss_pred hhheeeecccC-cceeecceeecCCcchhhheecceEEEEecCC
Confidence 99999888655 7788877653 35688888899999998864
No 313
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.47 E-value=6.6e-05 Score=87.60 Aligned_cols=265 Identities=11% Similarity=0.095 Sum_probs=157.7
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCC------CeE--EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCC
Q 003445 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTS------GID--SVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRS 102 (819)
Q Consensus 31 ~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~------~V~--~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~ 102 (819)
.++.++.++.|.-.|..+++.+..+..... .+. .+... ++..++.++.+|.|..+|.++|+.+-.+.....
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~ 141 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQ 141 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCC
Confidence 466677789999999999998887754322 000 11111 225777888999999999999999877764322
Q ss_pred C-----e-EEEEEecCCCEEEEEE---------CCCcEEEEECCCCeEEEEEecCCCC--------------------e-
Q 003445 103 N-----C-ISVDFHPFGEFFASGS---------LDTNLKIWDIRKKGCIHTYKGHTRG--------------------V- 146 (819)
Q Consensus 103 ~-----I-~sl~fsp~g~~Lasgs---------~Dg~I~IwDi~t~~~i~~~~~h~~~--------------------I- 146 (819)
. + ....+. +..++.++ .+|.|+.+|..+++.+..+...... +
T Consensus 142 ~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 142 VPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred cCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 1 1 111222 24555554 3688999999999998887642110 1
Q ss_pred EEEEEcCCCCEEEEEECCC------------------eEEEEECCCCeEEEEEecCCCCeE------EEEEe----CCCC
Q 003445 147 NAIRFTPDGRWVVSGGEDN------------------TVKLWDLTAGKLLHDFKCHEGQIQ------CIDFH----PHEF 198 (819)
Q Consensus 147 ~sl~fspdg~~L~sgs~Dg------------------~I~IwDl~t~~~i~~~~~h~~~I~------sl~fs----pdg~ 198 (819)
...++.+.+..++.++.++ .|.-+|..+|+....+........ ...+. -++.
T Consensus 220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~ 299 (488)
T cd00216 220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK 299 (488)
T ss_pred CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence 1234444566778787665 799999999999888763211111 11111 1333
Q ss_pred ---EEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE-------------------CCCEEEEEec
Q 003445 199 ---LLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL-------------------HESLKVFSWE 256 (819)
Q Consensus 199 ---~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs-------------------~d~I~Vwd~~ 256 (819)
+++.++.+|.++.+|.++|+.+....... ..++.+| ..++.+. .+.+.-+|..
T Consensus 300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~ 374 (488)
T cd00216 300 PVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK 374 (488)
T ss_pred eeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCC
Confidence 67888899999999999999887653210 1122222 1122110 1123333444
Q ss_pred CCceeeeeecc---------ccceeEeEecCCCEEEEEEcCCeEEEEEecCCceee
Q 003445 257 PIRCHDAVDVG---------WSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 257 ~~~~~~~~~~~---------~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~p 303 (819)
+++..-..... ......-..-.+.++.+++.||.|+.+|.+++++.-
T Consensus 375 tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 375 TGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred CCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceee
Confidence 44333222221 011111112345677788899999999999988764
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=2.1e-06 Score=99.42 Aligned_cols=181 Identities=13% Similarity=0.196 Sum_probs=136.1
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003445 102 SNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF 181 (819)
Q Consensus 102 ~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~ 181 (819)
+.++|++++ +++|+.|+.+|.|++++.... . .+...|... ..+|.++++|+.||.|.|..+-+.+...++
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 456677776 789999999999999997643 2 444445443 568999999999999999999888877777
Q ss_pred ecCCCCeEEEEEeCC-----CCEEEEEECCCeEEEEECCCCeEE--EEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEE
Q 003445 182 KCHEGQIQCIDFHPH-----EFLLATGSADRTVKFWDLETFELI--GSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFS 254 (819)
Q Consensus 182 ~~h~~~I~sl~fspd-----g~~Lasgs~Dg~I~iwDl~~~~~l--~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd 254 (819)
. ...++.+++++|+ .+.+++|+.-| +.++.-.-.... .......++|.++.| .|.++|.+++.+++|||
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~Gv~vyd 185 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDGVKVYD 185 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCCcEEEe
Confidence 6 4578999999998 56889998888 777764322111 134556789999999 57799999999999999
Q ss_pred ecCCceeeeeeccccc------eeEeEecCCCEEEEEEcCCeEEEEEec
Q 003445 255 WEPIRCHDAVDVGWSR------LSDLNVHEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 255 ~~~~~~~~~~~~~~s~------i~~l~~~dg~lLa~~~~Dg~V~IW~ld 297 (819)
..+.+....+.-.... -..+.|.+...|+.|+.| +|.|..+.
T Consensus 186 ~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 186 TPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred ccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEEEEEEe
Confidence 9887765544222111 123556788889999888 77787777
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=1.3e-05 Score=93.11 Aligned_cols=181 Identities=25% Similarity=0.308 Sum_probs=136.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 003445 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY 139 (819)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~ 139 (819)
..+.|++++ +++|+.|+.+|.|++++.... . .+...|... ..+|.++++|+.||.|.|..+-+.+...++
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 455666664 678999999999999997643 2 333445443 557999999999999999999888777766
Q ss_pred ecCCCCeEEEEEcCC-----CCEEEEEECCCeEEEEECCC--CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEE
Q 003445 140 KGHTRGVNAIRFTPD-----GRWVVSGGEDNTVKLWDLTA--GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFW 212 (819)
Q Consensus 140 ~~h~~~I~sl~fspd-----g~~L~sgs~Dg~I~IwDl~t--~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iw 212 (819)
. ...++.+++++|+ .+.+++|+..| +.++.-+- .+.........|+|.++.|. |+++|-++.+| |++|
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vy 184 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVY 184 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEE
Confidence 5 5678999999997 56899999988 77765331 11111344567899999996 77999998777 9999
Q ss_pred ECCCCeEEEEeCCCCCC------eeEEEEeCCCCEEEEEECCCEEEEEec
Q 003445 213 DLETFELIGSAGPETSG------VRCLTFNPDGRTLLCGLHESLKVFSWE 256 (819)
Q Consensus 213 Dl~~~~~l~~~~~~~~~------I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (819)
|+.+.+.+..+...... ...+.|.++ ..|+.|..++|+|..+.
T Consensus 185 d~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 185 DTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGDSVKICSIK 233 (846)
T ss_pred eccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCCeEEEEEEe
Confidence 99999988877655433 356778755 56788888999999887
No 316
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.35 E-value=0.0004 Score=72.66 Aligned_cols=231 Identities=16% Similarity=0.271 Sum_probs=135.6
Q ss_pred EEEeeCCCcEEEEEeCCCeEEEEECCCC--ceEEEec---CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003445 22 LKIGRKSSRVLVTGGEDHKVNLWAIGKP--NAILSLS---GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96 (819)
Q Consensus 22 lafsp~~~~~Latgs~Dg~V~IWdl~~~--~~i~~l~---~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~ 96 (819)
++.+. +|++||.- .|..|.|-...+. ..+.... ...-.=+.++|+||+.+||.+...|+|++||+.... +..
T Consensus 3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~ 79 (282)
T PF15492_consen 3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFV 79 (282)
T ss_pred eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEE
Confidence 45555 66666655 5666777655322 1222211 112235679999999999999999999999987533 333
Q ss_pred EcC-------CCCCeEEEEEecCC------CEEEEEECCCcEEEEECCC-----CeEEEEEe--c-CCCCeEEEEEcCCC
Q 003445 97 LTG-------HRSNCISVDFHPFG------EFFASGSLDTNLKIWDIRK-----KGCIHTYK--G-HTRGVNAIRFTPDG 155 (819)
Q Consensus 97 l~~-------h~~~I~sl~fsp~g------~~Lasgs~Dg~I~IwDi~t-----~~~i~~~~--~-h~~~I~sl~fspdg 155 (819)
+.. -...|..+.|.+.. ..|++-..+|.++-|-+.. .+..+.+. . +...|.++.|+|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 332 12456677775432 2466777788888776532 22333332 2 46789999999998
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCC-E-EEEEECCC------eEEEEECCCCeEEEEeCCCC
Q 003445 156 RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF-L-LATGSADR------TVKFWDLETFELIGSAGPET 227 (819)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~-~-Lasgs~Dg------~I~iwDl~~~~~l~~~~~~~ 227 (819)
+.|+.|+.... ..+. .+.....+++-..-.+.. + .++...|+ +..+|.+-+...........
T Consensus 160 ~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 229 (282)
T PF15492_consen 160 RLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQ 229 (282)
T ss_pred CEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCC
Confidence 88887775432 0000 001112222222211111 1 11122121 12445554444444344567
Q ss_pred CCeeEEEEeCCCCEEEEEEC-CCEEEEEecCCceeeeee
Q 003445 228 SGVRCLTFNPDGRTLLCGLH-ESLKVFSWEPIRCHDAVD 265 (819)
Q Consensus 228 ~~I~sl~fspdg~~Lasgs~-d~I~Vwd~~~~~~~~~~~ 265 (819)
..|..|..+|||..|++... +.|.+|++...+......
T Consensus 230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 88999999999999998754 569999999877765543
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=8.9e-05 Score=86.79 Aligned_cols=199 Identities=16% Similarity=0.207 Sum_probs=138.9
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCC-CEEEEEECCC-----cEEEEECCCC------
Q 003445 66 SFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDT-----NLKIWDIRKK------ 133 (819)
Q Consensus 66 ~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g-~~Lasgs~Dg-----~I~IwDi~t~------ 133 (819)
+|++.+..++.|+.+|.|.+.+ ..-+.++.++.+...+...-|.-++ .+|++.+.|+ .|+|||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 4678888999999999988887 3455567788777763333344444 5777776665 4899998642
Q ss_pred eEE--EEEec-----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC----CeEEEEEecCCCCeEEEEEeCCCCEEEE
Q 003445 134 GCI--HTYKG-----HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA----GKLLHDFKCHEGQIQCIDFHPHEFLLAT 202 (819)
Q Consensus 134 ~~i--~~~~~-----h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t----~~~i~~~~~h~~~I~sl~fspdg~~Las 202 (819)
.++ +.+.+ ...++.+++.+.+-+.+|+|..+|.|.++.-.- |...........+|+.+.+..++..++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 234 12222 245788999999999999999999999985321 1111112224678999999999887444
Q ss_pred EECCCeEEEEECCCCeE-EEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeeeee
Q 003445 203 GSADRTVKFWDLETFEL-IGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVD 265 (819)
Q Consensus 203 gs~Dg~I~iwDl~~~~~-l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~ 265 (819)
......|.+|.+....+ ...+..++..+.|..|++....++++....+.+|+-+.......+.
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeec
Confidence 44456799999985442 4457788889999999976665888878889999887654443443
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.31 E-value=0.00035 Score=84.76 Aligned_cols=198 Identities=18% Similarity=0.230 Sum_probs=134.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC----CCCeE
Q 003445 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDI----RKKGC 135 (819)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi----~t~~~ 135 (819)
..|.++.|..+...++.+...|.|.+-|.++..... ...-...|.+++|+||+..++..+.++++.+-+- -..+.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 589999999999999999999999999988765432 2224568999999999999999988887766532 00000
Q ss_pred E-------------------EEEec---------------------CCCCeEEEEEcCCCCEEEEEE----CC-CeEEEE
Q 003445 136 I-------------------HTYKG---------------------HTRGVNAIRFTPDGRWVVSGG----ED-NTVKLW 170 (819)
Q Consensus 136 i-------------------~~~~~---------------------h~~~I~sl~fspdg~~L~sgs----~D-g~I~Iw 170 (819)
+ ..+.+ ..+.=+.|.|-.||.++++.. .+ ..|++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 0 01111 011224589999999998733 23 689999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE---CCCeEEEEECCC---CeEEEEeCCCCCCeeEEEEeCCCCEEEE
Q 003445 171 DLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS---ADRTVKFWDLET---FELIGSAGPETSGVRCLTFNPDGRTLLC 244 (819)
Q Consensus 171 Dl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs---~Dg~I~iwDl~~---~~~l~~~~~~~~~I~sl~fspdg~~Las 244 (819)
|.. |..-..-....+.=.+++|-|.|.++++-. .|+.|.+|.-.. ++....+......+..++|+.++..|++
T Consensus 228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv 306 (1265)
T KOG1920|consen 228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAV 306 (1265)
T ss_pred ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceee
Confidence 976 544333333334456899999999998864 356799987543 2222223333445899999999999997
Q ss_pred ---EECCC-EEEEEecCCc
Q 003445 245 ---GLHES-LKVFSWEPIR 259 (819)
Q Consensus 245 ---gs~d~-I~Vwd~~~~~ 259 (819)
...+. +++|-.....
T Consensus 307 ~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 307 VTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eecccccceEEEEEecCeE
Confidence 33444 8888776543
No 319
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=5.6e-05 Score=81.69 Aligned_cols=253 Identities=13% Similarity=0.094 Sum_probs=149.8
Q ss_pred EEEEECCCCceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCC-EEEE
Q 003445 41 VNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE-FFAS 118 (819)
Q Consensus 41 V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~-~Las 118 (819)
+++.+..+.+....+.+|...|..++|+|..+ ++..++.+.+|+|.|+++...+..+..+ ..+++++|.-+.. ++..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 55555555555556677888999999999777 7888999999999999999999998877 7899999988765 5777
Q ss_pred EECCCcEEEEECCCCeE-EEEEec--CCCCeEEEEEc------CCCCEEEEEECCCeEEEEECCC--CeEEEEEe-cCCC
Q 003445 119 GSLDTNLKIWDIRKKGC-IHTYKG--HTRGVNAIRFT------PDGRWVVSGGEDNTVKLWDLTA--GKLLHDFK-CHEG 186 (819)
Q Consensus 119 gs~Dg~I~IwDi~t~~~-i~~~~~--h~~~I~sl~fs------pdg~~L~sgs~Dg~I~IwDl~t--~~~i~~~~-~h~~ 186 (819)
|-..|.|+|||++..+- +..+.+ ...+|..++.- +.|.+|+....+ +..|.+.. +....... ...+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCc
Confidence 78899999999986542 222221 12334444332 234444444333 34454432 11111111 1245
Q ss_pred CeEEEEEeCCCCEEEEEECC-C------eEE-EEECCCCeEEEEeC-CC-CC---Ce---eEEEEeCCCCEEEEEECC--
Q 003445 187 QIQCIDFHPHEFLLATGSAD-R------TVK-FWDLETFELIGSAG-PE-TS---GV---RCLTFNPDGRTLLCGLHE-- 248 (819)
Q Consensus 187 ~I~sl~fspdg~~Lasgs~D-g------~I~-iwDl~~~~~l~~~~-~~-~~---~I---~sl~fspdg~~Lasgs~d-- 248 (819)
...++++++-.+.++..... . .|- --|..+|..+..-+ .+ ++ .+ ..+.-.++.+++++-.++
T Consensus 332 ~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn 411 (463)
T KOG1645|consen 332 ICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTN 411 (463)
T ss_pred ceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcc
Confidence 56666666644444433222 1 011 11223343332211 11 11 10 112224455666654443
Q ss_pred CEEEEEecCCceeeeeeccccceeEeEe--cCCCEEEEEEcCCeEEEEEec
Q 003445 249 SLKVFSWEPIRCHDAVDVGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 249 ~I~Vwd~~~~~~~~~~~~~~s~i~~l~~--~dg~lLa~~~~Dg~V~IW~ld 297 (819)
.+.+||..+.+..+.+... .++.++.. -++.-+...-.|..++|+..+
T Consensus 412 ~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 412 ELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred eeEEeccchhheeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 5999999988888877776 56666665 234444445566688888654
No 320
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.31 E-value=0.00014 Score=75.99 Aligned_cols=197 Identities=14% Similarity=0.198 Sum_probs=119.3
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecC-------CCCCeEEEEEcCCC------CEEEEEECCCeEE
Q 003445 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSG-------HTSGIDSVSFDSSE------VLVAAGAASGTIK 84 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~-------h~~~V~~l~fspdg------~~Lasgs~DG~I~ 84 (819)
.=+-++|+| ++.+||.+...|+|++||+.. ..+..+.. -...|..+.|.+-. ..|++-..+|.++
T Consensus 45 QWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 45 QWRKLAWSP-DCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred hheEEEECC-CCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 356799999 778999999999999999864 44434332 23567777785422 1455557888888
Q ss_pred EEECCC-----CeEEEEEc--C-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 003445 85 LWDLEE-----AKIVRTLT--G-HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR 156 (819)
Q Consensus 85 IWDl~s-----~~~i~~l~--~-h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~ 156 (819)
-|-+.. .+....+. . +...|.++.|+|..++|++|+.... +.+. -++....+++-..-.+..
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~P 192 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSP 192 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCC
Confidence 887632 23333332 2 4678999999999898887764322 0000 001112222222221111
Q ss_pred E--EEEEECCC------eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC
Q 003445 157 W--VVSGGEDN------TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE 226 (819)
Q Consensus 157 ~--L~sgs~Dg------~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~ 226 (819)
+ .++...|+ +..+|.+-+.+...........|..|..+|||.+||+.+.+|.|.+|++.+..+...+..+
T Consensus 193 yyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 193 YYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred cEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 1 11111121 1133333322222211224567999999999999999999999999999988877766544
No 321
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.30 E-value=0.00018 Score=87.08 Aligned_cols=233 Identities=12% Similarity=0.183 Sum_probs=148.2
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC----CC--
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL----EE-- 90 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl----~s-- 90 (819)
+.|.++.|.- +..-++.+..+|.|.+-|.++..... ...-..+|.+++|+||+..++..+..+++.+-+- -.
T Consensus 69 ~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 69 DEIVSVQFLA-DTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred cceEEEEEec-ccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 5788999987 55567778888999998876554332 2234678999999999999999888888776542 00
Q ss_pred -----------------CeEEEEEcCC---------------------CCCeEEEEEecCCCEEEEEE-----CCCcEEE
Q 003445 91 -----------------AKIVRTLTGH---------------------RSNCISVDFHPFGEFFASGS-----LDTNLKI 127 (819)
Q Consensus 91 -----------------~~~i~~l~~h---------------------~~~I~sl~fsp~g~~Lasgs-----~Dg~I~I 127 (819)
|+.-..|.|. .+.=..|.|--||++||+.. ....|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 0101112211 11123589999999999833 2378999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCeEEEE----EecCCCCeEEEEEeCCCCEE
Q 003445 128 WDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG---EDNTVKLWDLTAGKLLHD----FKCHEGQIQCIDFHPHEFLL 200 (819)
Q Consensus 128 wDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs---~Dg~I~IwDl~t~~~i~~----~~~h~~~I~sl~fspdg~~L 200 (819)
||-+ +..-.+-....+.-.+++|-|.|.++++-. +|+.|.+|.-. |-.-.. +......|..++|+.++..|
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiL 304 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDIL 304 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecCCCCce
Confidence 9976 443333333334456899999999988754 45678888743 432222 22234458999999999999
Q ss_pred EE---EECCCeEEEEECCCCeE--EEEeCCCCCCeeEEEEeCCC--CEEEEEECCCEEEEEe
Q 003445 201 AT---GSADRTVKFWDLETFEL--IGSAGPETSGVRCLTFNPDG--RTLLCGLHESLKVFSW 255 (819)
Q Consensus 201 as---gs~Dg~I~iwDl~~~~~--l~~~~~~~~~I~sl~fspdg--~~Lasgs~d~I~Vwd~ 255 (819)
|+ ......|++|-+.+..- ...+....... +.|+|.. ++.+.+-.+...+++|
T Consensus 305 Av~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 305 AVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred eeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 98 55555699999987553 22333332222 7888843 2233333344444444
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.00011 Score=86.13 Aligned_cols=220 Identities=13% Similarity=0.155 Sum_probs=145.5
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCC-eEEEEEcCCCCEEEEEECCC-----eEEEEECCCC
Q 003445 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSG-IDSVSFDSSEVLVAAGAASG-----TIKLWDLEEA 91 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~-V~~l~fspdg~~Lasgs~DG-----~I~IWDl~s~ 91 (819)
.|.|+ ++ ++..+|.|+.+|.|.+++- ..+.+..+..+... |..+....+..+|++.+.|+ .|++||++..
T Consensus 27 ~isc~--~s-~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 27 AISCC--SS-STGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred ceeEE--cC-CCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 45544 44 5567999999999988873 34555777777777 55554444556777777665 4899999642
Q ss_pred ------eEEE--EEcC-----CCCCeEEEEEecCCCEEEEEECCCcEEEEECC---C-CeEEEEEecCCCCeEEEEEcCC
Q 003445 92 ------KIVR--TLTG-----HRSNCISVDFHPFGEFFASGSLDTNLKIWDIR---K-KGCIHTYKGHTRGVNAIRFTPD 154 (819)
Q Consensus 92 ------~~i~--~l~~-----h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~---t-~~~i~~~~~h~~~I~sl~fspd 154 (819)
+++. .+.. ...++.+++.+.+-+.+|+|-.+|.|..+.-+ . +...........+|+.+.+..+
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 2331 1222 24578899999998999999999999988422 1 1111112234578999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCeE-EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeC-CCCCCeeE
Q 003445 155 GRWVVSGGEDNTVKLWDLTAGKL-LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG-PETSGVRC 232 (819)
Q Consensus 155 g~~L~sgs~Dg~I~IwDl~t~~~-i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~-~~~~~I~s 232 (819)
+..++-+..-..|.+|.+....+ ...+..|...+.|..|++...-+++++ +..+.+||....++...+. ++.. -
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk---~ 258 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKK---E 258 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeE---E
Confidence 98744444566889999884442 444667788899999988766455554 4569999998766666665 4432 2
Q ss_pred EEEeCCCCEEEEE
Q 003445 233 LTFNPDGRTLLCG 245 (819)
Q Consensus 233 l~fspdg~~Lasg 245 (819)
+-|...|.+|++.
T Consensus 259 ~~~~~~g~~L~v~ 271 (933)
T KOG2114|consen 259 MLVFSFGLLLCVT 271 (933)
T ss_pred EEEEecCEEEEEE
Confidence 3333335555543
No 323
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.25 E-value=0.00042 Score=80.68 Aligned_cols=260 Identities=10% Similarity=0.070 Sum_probs=161.3
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCC-------------CCCeE-------EEEE--------c-----CCCCEEEEE
Q 003445 31 VLVTGGEDHKVNLWAIGKPNAILSLSGH-------------TSGID-------SVSF--------D-----SSEVLVAAG 77 (819)
Q Consensus 31 ~Latgs~Dg~V~IWdl~~~~~i~~l~~h-------------~~~V~-------~l~f--------s-----pdg~~Lasg 77 (819)
.|.+|+..|.|+|+-+.+++.++.+.-. +..|. .+.| | .||++|+.-
T Consensus 68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~fin 147 (635)
T PRK02888 68 GFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIN 147 (635)
T ss_pred EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEe
Confidence 4778899999999999888887765310 00111 1122 1 257777776
Q ss_pred EC-CCeEEEEECCCCeEEEEEc-CCCCCeEEEEE-------------------ecCCCEEEE-EECCCcEEEEECCCCeE
Q 003445 78 AA-SGTIKLWDLEEAKIVRTLT-GHRSNCISVDF-------------------HPFGEFFAS-GSLDTNLKIWDIRKKGC 135 (819)
Q Consensus 78 s~-DG~I~IWDl~s~~~i~~l~-~h~~~I~sl~f-------------------sp~g~~Las-gs~Dg~I~IwDi~t~~~ 135 (819)
.. +..|...+++..++-+.+. .....+..+.| .|+|+.+.. .-..+.+.++|..+.+.
T Consensus 148 dk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV 227 (635)
T PRK02888 148 DKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEV 227 (635)
T ss_pred cCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceE
Confidence 53 5667777776554433322 11122222333 334443322 22235677778887777
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEE
Q 003445 136 IHTYKGHTRGVNAIRFTPDGRWVVSGGED----NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKF 211 (819)
Q Consensus 136 i~~~~~h~~~I~sl~fspdg~~L~sgs~D----g~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~i 211 (819)
..++.--. ....+.++++|+++++.+.+ +.+...+......+..|... .+ -.+.++|++...+ ++.|.+
T Consensus 228 ~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~i--ea~vkdGK~~~V~--gn~V~V 300 (635)
T PRK02888 228 AWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--RI--EEAVKAGKFKTIG--GSKVPV 300 (635)
T ss_pred EEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--HH--HHhhhCCCEEEEC--CCEEEE
Confidence 76665432 44678899999999888632 23333333322222222210 00 1334578777663 678999
Q ss_pred EECCC-----CeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC--CCEEEEEecCCce------------eeeeecccccee
Q 003445 212 WDLET-----FELIGSAGPETSGVRCLTFNPDGRTLLCGLH--ESLKVFSWEPIRC------------HDAVDVGWSRLS 272 (819)
Q Consensus 212 wDl~~-----~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~--d~I~Vwd~~~~~~------------~~~~~~~~s~i~ 272 (819)
+|..+ .+.+..+. -......+.++|||+++++++. +.+.|+|+...+. ...+.++..++.
T Consensus 301 ID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLH 379 (635)
T PRK02888 301 VDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLH 379 (635)
T ss_pred EECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcce
Confidence 99998 34444443 3345689999999999998754 4699999988653 445566777776
Q ss_pred EeEecCCCEEEEEEcCCeEEEEEecC
Q 003445 273 DLNVHEGKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 273 ~l~~~dg~lLa~~~~Dg~V~IW~ld~ 298 (819)
.-+-.+|....+-+-|..|-.|+++.
T Consensus 380 TaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 380 TAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEECCCCCEEEeEeecceeEEEehHH
Confidence 66667788888999999999999986
No 324
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.16 E-value=0.00072 Score=78.78 Aligned_cols=210 Identities=12% Similarity=0.091 Sum_probs=129.8
Q ss_pred EcCCCCEEEE-EECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCC----cEEEEECCCCeEEEEEec
Q 003445 67 FDSSEVLVAA-GAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT----NLKIWDIRKKGCIHTYKG 141 (819)
Q Consensus 67 fspdg~~Las-gs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg----~I~IwDi~t~~~i~~~~~ 141 (819)
+.+||+.+.. .-..+.+.++|.++.+...++... .....++++++|+++++.+.+. ++..-+......+..+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 3456654422 233467778888887776665532 2446678999999988886432 233333222222222211
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-----CeEEEEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECC
Q 003445 142 HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA-----GKLLHDFKCHEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLE 215 (819)
Q Consensus 142 h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t-----~~~i~~~~~h~~~I~sl~fspdg~~Lasgs-~Dg~I~iwDl~ 215 (819)
.. + -++.++|++... .++.|.++|.++ .+.+..+. -......+.++|||+++++++ .+.+|.++|+.
T Consensus 279 ~~--i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 279 AR--I--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR 351 (635)
T ss_pred HH--H--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence 00 0 133457887666 367899999998 34555554 345568999999999887766 48899999998
Q ss_pred CCeE------------EEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecC----------Cceeeeeecccccee
Q 003445 216 TFEL------------IGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP----------IRCHDAVDVGWSRLS 272 (819)
Q Consensus 216 ~~~~------------l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~----------~~~~~~~~~~~s~i~ 272 (819)
+.+. +..... .......+|+++|....+-.-+ .+..|+++. ....+.+++++.+..
T Consensus 352 k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh 430 (635)
T PRK02888 352 KLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGH 430 (635)
T ss_pred hhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccce
Confidence 8553 333333 3345678899999866655555 588899876 234455566665544
Q ss_pred EeE------ecCCCEEEEE
Q 003445 273 DLN------VHEGKLLGCS 285 (819)
Q Consensus 273 ~l~------~~dg~lLa~~ 285 (819)
... -++|++|++.
T Consensus 431 ~~~~~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 431 NHASMGETKEADGKWLVSL 449 (635)
T ss_pred eeecCCCcCCCCCCEEEEc
Confidence 433 3677777654
No 325
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.10 E-value=1.1e-05 Score=59.37 Aligned_cols=39 Identities=38% Similarity=0.786 Sum_probs=37.0
Q ss_pred CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEE
Q 003445 175 GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWD 213 (819)
Q Consensus 175 ~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwD 213 (819)
++++..+.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 326
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.10 E-value=0.0008 Score=75.99 Aligned_cols=235 Identities=16% Similarity=0.185 Sum_probs=138.5
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceE-------------------------------------------EE
Q 003445 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI-------------------------------------------LS 54 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i-------------------------------------------~~ 54 (819)
.|+++.|+++. .-|++|...|.|.||.+...+.. ..
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 58899999844 45889999999999976321111 11
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc--C------CCCCeEEEEEec-----CC---CEEEE
Q 003445 55 LSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT--G------HRSNCISVDFHP-----FG---EFFAS 118 (819)
Q Consensus 55 l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~--~------h~~~I~sl~fsp-----~g---~~Las 118 (819)
+....++|++++.+ |=-+++.|..+|.+.|.|++....+..-. . ....++++.|.. |+ -.+++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 22346789999987 55599999999999999998888776632 1 234678888863 22 36889
Q ss_pred EECCCcEEEEECC--C-CeEE----EEEecCCCCeEEEE-EcCC-C-------------------CEEEEEECCCeEEEE
Q 003445 119 GSLDTNLKIWDIR--K-KGCI----HTYKGHTRGVNAIR-FTPD-G-------------------RWVVSGGEDNTVKLW 170 (819)
Q Consensus 119 gs~Dg~I~IwDi~--t-~~~i----~~~~~h~~~I~sl~-fspd-g-------------------~~L~sgs~Dg~I~Iw 170 (819)
|+..|.+.+|.+. . +... .....+.++|..+. |+.+ | +.++....+..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 9999999999774 1 2211 11224556666555 3221 1 234455568889999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEe-----CCCCEEEEEECCCeEEEEECCCCeEEEEeCCCC----CCeeEEEEeCCCCE
Q 003445 171 DLTAGKLLHDFKCHEGQIQCIDFH-----PHEFLLATGSADRTVKFWDLETFELIGSAGPET----SGVRCLTFNPDGRT 241 (819)
Q Consensus 171 Dl~t~~~i~~~~~h~~~I~sl~fs-----pdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~----~~I~sl~fspdg~~ 241 (819)
..-+.+..+...........+.+- ..+..|++-..+|.|++|.+...+.+....... ..+....|+++|..
T Consensus 241 ~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi 320 (395)
T PF08596_consen 241 KPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDI 320 (395)
T ss_dssp -TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-E
T ss_pred eCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCE
Confidence 998887766554222233344452 357788999999999999999999887765532 23456778899998
Q ss_pred EEEEECCCEEEEE
Q 003445 242 LLCGLHESLKVFS 254 (819)
Q Consensus 242 Lasgs~d~I~Vwd 254 (819)
++..+...+.+|.
T Consensus 321 ~~~~gpsE~~l~s 333 (395)
T PF08596_consen 321 FYWTGPSEIQLFS 333 (395)
T ss_dssp EEE-SSSEEEEEE
T ss_pred EEEeCcccEEEEE
Confidence 8776665544443
No 327
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.09 E-value=1.1e-05 Score=59.26 Aligned_cols=39 Identities=46% Similarity=0.833 Sum_probs=37.0
Q ss_pred CeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q 003445 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWD 129 (819)
Q Consensus 91 ~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwD 129 (819)
++++.++.+|...|.+|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 328
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.07 E-value=0.0018 Score=68.43 Aligned_cols=199 Identities=8% Similarity=0.169 Sum_probs=122.3
Q ss_pred EEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGH-TSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (819)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h-~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (819)
.+.+-...+..++|.|+++.++++....+.|..++. +++.+..+.-. .+....|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 555666779999999988889999999999999996 57887776533 3578999999888888877678999999984
Q ss_pred CC------eEEEEEc-----CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC---CeEEEEE--e------cCCCCeE
Q 003445 90 EA------KIVRTLT-----GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK---KGCIHTY--K------GHTRGVN 147 (819)
Q Consensus 90 s~------~~i~~l~-----~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t---~~~i~~~--~------~h~~~I~ 147 (819)
.. .....+. .+...+-.++|.+.++.|+++-...-..+|.+.. ...+... . .....+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 32 1112221 2445689999999988877777776666666653 2222211 1 1334578
Q ss_pred EEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEecCC---------CCeEEEEEeCCCCEEEEEECCCeEEEE
Q 003445 148 AIRFTPD-GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE---------GQIQCIDFHPHEFLLATGSADRTVKFW 212 (819)
Q Consensus 148 sl~fspd-g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~---------~~I~sl~fspdg~~Lasgs~Dg~I~iw 212 (819)
++.++|. |++++....+..|..+| ..|+.+..+.-.. .+.-.|+|.++|++.+++ +-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 9999995 55666666778899999 6687776665332 246789999998655554 55555544
No 329
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.06 E-value=0.0041 Score=64.24 Aligned_cols=235 Identities=12% Similarity=0.063 Sum_probs=132.7
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEE
Q 003445 71 EVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIR 150 (819)
Q Consensus 71 g~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~ 150 (819)
..+++.|+..+.+.-.|..+|+.+..-. -...|.+-+.- -|++++.|+..|.+++.+..+|..++.+.....--....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4578889999999999999998764432 12223222222 478899999999999999999988877764332122334
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC-----------eE
Q 003445 151 FTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF-----------EL 219 (819)
Q Consensus 151 fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~-----------~~ 219 (819)
..+++..+..|+.|+..+..|.++..++...+...+.-.+-+..|-...|..+...|.+.--....+ .+
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~P 180 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGP 180 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCc
Confidence 5678999999999999999999999999988765554444555563233333334444433333322 22
Q ss_pred EEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeeeeeccccce-eEeEecCCCEEEEEEcCCeEEEEEecC
Q 003445 220 IGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRL-SDLNVHEGKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 220 l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~s~i-~~l~~~dg~lLa~~~~Dg~V~IW~ld~ 298 (819)
+......-++-..+. .-||.++... ..+-.||.+.+.-..-.-+....+. ..+...+..-+...-.-....+|..+.
T Consensus 181 iF~splcv~~sv~i~-~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~ 258 (354)
T KOG4649|consen 181 IFASPLCVGSSVIIT-TVDGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQS 258 (354)
T ss_pred cccCceeccceEEEE-EeccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecC
Confidence 221100000001110 1255544433 3335677666544322111111111 223333333333333333456788887
Q ss_pred Cceeeeeeccc
Q 003445 299 SRIEPYTIGSV 309 (819)
Q Consensus 299 ~~~~p~~~~~~ 309 (819)
+.....+....
T Consensus 259 g~t~~vy~~p~ 269 (354)
T KOG4649|consen 259 GTTLHVYLSPK 269 (354)
T ss_pred CcEEEEEeCcc
Confidence 76555554443
No 330
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.04 E-value=0.003 Score=73.78 Aligned_cols=234 Identities=15% Similarity=0.158 Sum_probs=142.8
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCCCCC--eEEEEEcC--CCCEEEEEE---------CCCeEEEEECCCCeEEEE
Q 003445 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSG--IDSVSFDS--SEVLVAAGA---------ASGTIKLWDLEEAKIVRT 96 (819)
Q Consensus 30 ~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~--V~~l~fsp--dg~~Lasgs---------~DG~I~IWDl~s~~~i~~ 96 (819)
..++.++.+|.|+.+|..+++.+..+...... -..+.-+| .+.+++.++ .+|.|..+|..+|+.+-.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 46777888999999999999999887643221 00111111 124455553 368899999999998877
Q ss_pred EcCCCCC--------------------e-EEEEEecCCCEEEEEECCC------------------cEEEEECCCCeEEE
Q 003445 97 LTGHRSN--------------------C-ISVDFHPFGEFFASGSLDT------------------NLKIWDIRKKGCIH 137 (819)
Q Consensus 97 l~~h~~~--------------------I-~sl~fsp~g~~Lasgs~Dg------------------~I~IwDi~t~~~i~ 137 (819)
+...... + ....+.+.+..++.++.++ .|.-+|..+++.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 6532110 1 1233444566777777665 79999999999998
Q ss_pred EEecCCCCeE------EEEEc----CCCC---EEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEE-
Q 003445 138 TYKGHTRGVN------AIRFT----PDGR---WVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATG- 203 (819)
Q Consensus 138 ~~~~h~~~I~------sl~fs----pdg~---~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasg- 203 (819)
.++.-..... ...+. -+|. .++.++.+|.+..+|.++|+.+....... ..+..+| ..++.+
T Consensus 271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~ 345 (488)
T cd00216 271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGA 345 (488)
T ss_pred EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEcc
Confidence 8753111111 01111 1343 57788899999999999999988765321 1233344 223322
Q ss_pred -----------------ECCCeEEEEECCCCeEEEEeCCCC--------CCeeEEEEeCCCCEEEEEECC-CEEEEEecC
Q 003445 204 -----------------SADRTVKFWDLETFELIGSAGPET--------SGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP 257 (819)
Q Consensus 204 -----------------s~Dg~I~iwDl~~~~~l~~~~~~~--------~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~ 257 (819)
..+|.|.-+|..+|+.+....... .+...-...-.+..|++++.+ .+..+|.++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATT 425 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCC
Confidence 236789999999999887765431 111111111244567766544 588888888
Q ss_pred Cceeeeeeccc
Q 003445 258 IRCHDAVDVGW 268 (819)
Q Consensus 258 ~~~~~~~~~~~ 268 (819)
++..-......
T Consensus 426 G~~lW~~~~~~ 436 (488)
T cd00216 426 GKELWKFRTPS 436 (488)
T ss_pred CceeeEEECCC
Confidence 87766555543
No 331
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.02 E-value=0.0079 Score=70.83 Aligned_cols=188 Identities=12% Similarity=0.123 Sum_probs=120.1
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCC-CCeE---E-------EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003445 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHT-SGID---S-------VSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (819)
Q Consensus 31 ~Latgs~Dg~V~IWdl~~~~~i~~l~~h~-~~V~---~-------l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~ 99 (819)
.+++++.++.|+-.|..+++.+..+.... ..+. + +++ .+..++.++.|+.|.-.|..+|+.+-....
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 56667778899999999999988775321 1111 1 122 234567788899999999999998876542
Q ss_pred CCCC-eEEEEEec--CCCEEEEEEC------CCcEEEEECCCCeEEEEEecCCC--------------------------
Q 003445 100 HRSN-CISVDFHP--FGEFFASGSL------DTNLKIWDIRKKGCIHTYKGHTR-------------------------- 144 (819)
Q Consensus 100 h~~~-I~sl~fsp--~g~~Lasgs~------Dg~I~IwDi~t~~~i~~~~~h~~-------------------------- 144 (819)
.... -..+.-.| .+..++++.. +|.|..+|.++++.+..+..-..
T Consensus 149 ~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~ 228 (527)
T TIGR03075 149 GDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAW 228 (527)
T ss_pred ccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCcc
Confidence 1110 00111111 1334555442 68999999999998877542111
Q ss_pred -----Ce-EEEEEcCCCCEEEEEECC-----C-----------eEEEEECCCCeEEEEEecCCCCe---------EEEEE
Q 003445 145 -----GV-NAIRFTPDGRWVVSGGED-----N-----------TVKLWDLTAGKLLHDFKCHEGQI---------QCIDF 193 (819)
Q Consensus 145 -----~I-~sl~fspdg~~L~sgs~D-----g-----------~I~IwDl~t~~~i~~~~~h~~~I---------~sl~f 193 (819)
.+ ..+.+.+...+++.+..+ + .|.-.|+++|+....|+.....+ .-+.+
T Consensus 229 ~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~ 308 (527)
T TIGR03075 229 KTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDL 308 (527)
T ss_pred ccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEe
Confidence 11 134666666666665521 2 67788999999988877422211 12223
Q ss_pred eCCCC---EEEEEECCCeEEEEECCCCeEE
Q 003445 194 HPHEF---LLATGSADRTVKFWDLETFELI 220 (819)
Q Consensus 194 spdg~---~Lasgs~Dg~I~iwDl~~~~~l 220 (819)
..+|+ .++.+..+|.+++.|-.+|+.+
T Consensus 309 ~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 309 KKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 34665 8889999999999999999986
No 332
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=2.6e-05 Score=85.18 Aligned_cols=203 Identities=18% Similarity=0.189 Sum_probs=145.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC---CeEEEEEcCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEECCCC
Q 003445 58 HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE---AKIVRTLTGHRSNCISVDFHPFGEFFASGSL-DTNLKIWDIRKK 133 (819)
Q Consensus 58 h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s---~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~-Dg~I~IwDi~t~ 133 (819)
|...|+.+.. .-.+++.+++.||.++.|.-.. -+.+..+..|...|.+++.+-++..+.+++. |..++++|+.+-
T Consensus 8 hrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 6666766654 3456899999999999998543 2345566778889999999999999999887 999999999876
Q ss_pred eEEEEEecC--CCCeEEEEEcCCC----CEEEEEECCCeEEEEECCCCe-EEEEE-ecCCCCeEEEEEeCCCCEEEEEEC
Q 003445 134 GCIHTYKGH--TRGVNAIRFTPDG----RWVVSGGEDNTVKLWDLTAGK-LLHDF-KCHEGQIQCIDFHPHEFLLATGSA 205 (819)
Q Consensus 134 ~~i~~~~~h--~~~I~sl~fspdg----~~L~sgs~Dg~I~IwDl~t~~-~i~~~-~~h~~~I~sl~fspdg~~Lasgs~ 205 (819)
..+..++.. .+.+.+ +...| ..-++...+|.+.++|-...- ....+ +-|..+|.++.+.+-+..+++...
T Consensus 87 DminmiKL~~lPg~a~w--v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEW--VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred chhhhcccccCCCceEE--ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 655443321 222222 22223 223334467899999987543 22233 358999999999999999999999
Q ss_pred CCeEEEEECCC-Ce-----EEEE---------eCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeee
Q 003445 206 DRTVKFWDLET-FE-----LIGS---------AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDA 263 (819)
Q Consensus 206 Dg~I~iwDl~~-~~-----~l~~---------~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~ 263 (819)
.|.|.-|..+. .+ .... +........++.|+|+|..+.+-..+ .++++.+.+++..+.
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 99999999872 11 1111 22234567899999999999977666 699999988766543
No 333
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.00022 Score=82.90 Aligned_cols=113 Identities=11% Similarity=0.170 Sum_probs=88.4
Q ss_pred CCCEEEEEEeeCCCcEEEEEe----CCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 003445 16 SSTVNCLKIGRKSSRVLVTGG----EDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA 91 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs----~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~ 91 (819)
...-+-..|+| ...+|++++ ..|.|.||- ++|++..... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.
T Consensus 15 davsti~SWHP-sePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 15 DAVSTISSWHP-SEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccccccccCC-CCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCc
Confidence 33344567999 777888875 358888885 4555433222 1123456999999999999999999999998887
Q ss_pred eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC
Q 003445 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR 131 (819)
Q Consensus 92 ~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~ 131 (819)
+.-.....|..+|..+.|+++|..++++..-|.|.+|...
T Consensus 92 e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 92 ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 7766667799999999999999999999999999999765
No 334
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.95 E-value=0.0022 Score=67.69 Aligned_cols=193 Identities=16% Similarity=0.293 Sum_probs=115.2
Q ss_pred EecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEcCC-CCCeEEEEEecCCCEEEEEECCCcEEEEECC
Q 003445 54 SLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVRTLTGH-RSNCISVDFHPFGEFFASGSLDTNLKIWDIR 131 (819)
Q Consensus 54 ~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWDl~s~~~i~~l~~h-~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~ 131 (819)
.+.+-...+..++|+|+.. ++++....+.|..++. +|+.++.+.-. .+..-.|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4556666799999999755 6667777888888886 47888776533 3567889998777777766568999999884
Q ss_pred CCe------EEEEEe-----cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC---CeEEEEEe--------cCCCCeE
Q 003445 132 KKG------CIHTYK-----GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA---GKLLHDFK--------CHEGQIQ 189 (819)
Q Consensus 132 t~~------~i~~~~-----~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t---~~~i~~~~--------~h~~~I~ 189 (819)
... ....+. .++..+..++|.+.++.|+.+-...-..+|.+.. ...+.... .....+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 112221 2456689999999888888887766556665543 22221111 1234578
Q ss_pred EEEEeCC-CCEEEEEECCCeEEEEECCCCeEEEEeCCCC---------CCeeEEEEeCCCCEEEEEECC
Q 003445 190 CIDFHPH-EFLLATGSADRTVKFWDLETFELIGSAGPET---------SGVRCLTFNPDGRTLLCGLHE 248 (819)
Q Consensus 190 sl~fspd-g~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~---------~~I~sl~fspdg~~Lasgs~d 248 (819)
++.++|. +.+++.......|..+| .+|+.+..+.-.. ...-.|+|.++|++.+++-.+
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN 242 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN 242 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTT
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCc
Confidence 9999996 56777777888999999 6677666543222 246889999999877777544
No 335
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.94 E-value=0.0032 Score=70.39 Aligned_cols=245 Identities=13% Similarity=0.132 Sum_probs=137.3
Q ss_pred CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCC----------------
Q 003445 38 DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHR---------------- 101 (819)
Q Consensus 38 Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~---------------- 101 (819)
.+.+.|||+.+++...... ....+....|+|+|+.++... ++.|.++++.++...+......
T Consensus 22 ~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 4679999998866554333 267889999999999998875 7899999998886554322111
Q ss_pred -CCeEEEEEecCCCEEEEEECCC------------------------------------cEEEEECCCCeEEE-E-E---
Q 003445 102 -SNCISVDFHPFGEFFASGSLDT------------------------------------NLKIWDIRKKGCIH-T-Y--- 139 (819)
Q Consensus 102 -~~I~sl~fsp~g~~Lasgs~Dg------------------------------------~I~IwDi~t~~~i~-~-~--- 139 (819)
+.-..+.|+|++++|+....|- .+.++|+.+++... . .
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~ 179 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL 179 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc
Confidence 1224688999999988765432 14445555444321 1 1
Q ss_pred ecCCCCeEEEEEcCCCCEEEEE--ECCC---eEEEEECCCCeEEEEEec-CCCCe---EEEEEe-CCC-CEEEEEECCC-
Q 003445 140 KGHTRGVNAIRFTPDGRWVVSG--GEDN---TVKLWDLTAGKLLHDFKC-HEGQI---QCIDFH-PHE-FLLATGSADR- 207 (819)
Q Consensus 140 ~~h~~~I~sl~fspdg~~L~sg--s~Dg---~I~IwDl~t~~~i~~~~~-h~~~I---~sl~fs-pdg-~~Lasgs~Dg- 207 (819)
......+..+.|.++++.|+.. ..+. .+.++|..++++...... ..+.| ....|. +++ .+|.....||
T Consensus 180 ~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~ 259 (353)
T PF00930_consen 180 NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGY 259 (353)
T ss_dssp HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence 1223457788999988844433 2222 467778877654333322 22222 345554 554 4555555677
Q ss_pred -eEEEEECCCCeEEEEeCCCCCCeeE-EEEeCCCCEEEEEECC----CEEEEEecCC--ceeeeeeccccc-eeEeEecC
Q 003445 208 -TVKFWDLETFELIGSAGPETSGVRC-LTFNPDGRTLLCGLHE----SLKVFSWEPI--RCHDAVDVGWSR-LSDLNVHE 278 (819)
Q Consensus 208 -~I~iwDl~~~~~l~~~~~~~~~I~s-l~fspdg~~Lasgs~d----~I~Vwd~~~~--~~~~~~~~~~s~-i~~l~~~d 278 (819)
.|++++...+... .+....-.|.. +.|+++++.|+..+.. .-.+|..+-. .....+...... ......++
T Consensus 260 ~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spd 338 (353)
T PF00930_consen 260 RHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPD 338 (353)
T ss_dssp EEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TT
T ss_pred cEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCC
Confidence 4666677766643 45545556744 7788888777643332 3455544433 222222222222 23344477
Q ss_pred CCEEEEE
Q 003445 279 GKLLGCS 285 (819)
Q Consensus 279 g~lLa~~ 285 (819)
+++++-.
T Consensus 339 g~y~v~~ 345 (353)
T PF00930_consen 339 GKYYVDT 345 (353)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 7777643
No 336
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.90 E-value=0.0091 Score=63.95 Aligned_cols=230 Identities=17% Similarity=0.198 Sum_probs=134.9
Q ss_pred CCCCEEEEEECCCeEEEEECC-CCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE--------
Q 003445 69 SSEVLVAAGAASGTIKLWDLE-EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-------- 139 (819)
Q Consensus 69 pdg~~Lasgs~DG~I~IWDl~-s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~-------- 139 (819)
..++.|+.|+.+| |.++++. ......... ...|..+...++-+.|++-+ |+.++++++.........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4678899999998 9999983 333333332 33499999998877777765 599999998764433311
Q ss_pred ------ecCCCCeEEEE--EcCCCCEEEEEECCCeEEEEECCCC-----eEEEEEecCCCCeEEEEEeCCCCEEEEEECC
Q 003445 140 ------KGHTRGVNAIR--FTPDGRWVVSGGEDNTVKLWDLTAG-----KLLHDFKCHEGQIQCIDFHPHEFLLATGSAD 206 (819)
Q Consensus 140 ------~~h~~~I~sl~--fspdg~~L~sgs~Dg~I~IwDl~t~-----~~i~~~~~h~~~I~sl~fspdg~~Lasgs~D 206 (819)
......+..++ -...+...++......|.+|..... +...++.. ...+..++|. +..|+.|..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEEeCC
Confidence 11223444444 1123333444445558888877653 45566653 5778999998 5577777754
Q ss_pred CeEEEEECCCCeEEEEeCCCC------------CCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeeeeeccccceeEe
Q 003445 207 RTVKFWDLETFELIGSAGPET------------SGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDL 274 (819)
Q Consensus 207 g~I~iwDl~~~~~l~~~~~~~------------~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~s~i~~l 274 (819)
...+.|+.++.....+.... .++..+.. +++.+|++- ++ +-+|-=..++........|...-.-
T Consensus 158 -~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~-~~-~g~fv~~~G~~~r~~~i~W~~~p~~ 233 (275)
T PF00780_consen 158 -GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY-DN-IGVFVNKNGEPSRKSTIQWSSAPQS 233 (275)
T ss_pred -ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe-cc-eEEEEcCCCCcCcccEEEcCCchhE
Confidence 48889999776544432211 22333333 345666653 33 3333333333333344555432222
Q ss_pred EecCCCEEEEEEcCCeEEEEEecCCceeeeeecccc
Q 003445 275 NVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVT 310 (819)
Q Consensus 275 ~~~dg~lLa~~~~Dg~V~IW~ld~~~~~p~~~~~~~ 310 (819)
......+|++ ..++.|.||++..+++.+.......
T Consensus 234 ~~~~~pyli~-~~~~~iEV~~~~~~~lvQ~i~~~~~ 268 (275)
T PF00780_consen 234 VAYSSPYLIA-FSSNSIEVRSLETGELVQTIPLPNI 268 (275)
T ss_pred EEEECCEEEE-ECCCEEEEEECcCCcEEEEEECCCE
Confidence 2223445554 4446799999999988766655443
No 337
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.90 E-value=3.8e-06 Score=95.03 Aligned_cols=197 Identities=19% Similarity=0.313 Sum_probs=132.2
Q ss_pred CCCEEEEEEeeCCC-cEEEEEeCCCeEEEEECCCCce--EEEecCCCCCeEEEEEcC-CCCEEEEEE----CCCeEEEEE
Q 003445 16 SSTVNCLKIGRKSS-RVLVTGGEDHKVNLWAIGKPNA--ILSLSGHTSGIDSVSFDS-SEVLVAAGA----ASGTIKLWD 87 (819)
Q Consensus 16 ~~~V~~lafsp~~~-~~Latgs~Dg~V~IWdl~~~~~--i~~l~~h~~~V~~l~fsp-dg~~Lasgs----~DG~I~IWD 87 (819)
...+.|+++..+.. .++++|..+|.|.+-.+..... -....+|...+++++|++ |...||+|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34688888776444 5889999999999988754332 234567889999999988 556676663 256899999
Q ss_pred CCCC--eE--EEEEcC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeE-EEEEecCCCCeEEEEEcC-CCCEEEE
Q 003445 88 LEEA--KI--VRTLTG-HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC-IHTYKGHTRGVNAIRFTP-DGRWVVS 160 (819)
Q Consensus 88 l~s~--~~--i~~l~~-h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~-i~~~~~h~~~I~sl~fsp-dg~~L~s 160 (819)
+.++ .+ -..+.+ ......+++|-.+.+++.+|.....++++|++.... ...+ .+..+..+.+.| .++++++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceec
Confidence 9876 11 112222 334456889998888999999989999999984321 2222 233456677788 6677766
Q ss_pred EECCCeEEEEE-CCCCeE-EEEEe----cCCCCeEEEEEeCCC-CEEEEEE-CCCeEEEEECC
Q 003445 161 GGEDNTVKLWD-LTAGKL-LHDFK----CHEGQIQCIDFHPHE-FLLATGS-ADRTVKFWDLE 215 (819)
Q Consensus 161 gs~Dg~I~IwD-l~t~~~-i~~~~----~h~~~I~sl~fspdg-~~Lasgs-~Dg~I~iwDl~ 215 (819)
- .||.|.+|| .+.-+. +..+. .....+..++|.|.. ..+++.. ..++|++||+.
T Consensus 214 ~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 214 N-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 5 499999999 443322 11111 112348999999953 2444444 45789999985
No 338
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.017 Score=65.40 Aligned_cols=242 Identities=14% Similarity=0.160 Sum_probs=162.6
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCC-CCeEEEEEcCCCCE-EEEEECCCeEEEEECCCCeEEE
Q 003445 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHT-SGIDSVSFDSSEVL-VAAGAASGTIKLWDLEEAKIVR 95 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~-~~V~~l~fspdg~~-Lasgs~DG~I~IWDl~s~~~i~ 95 (819)
....+.+.+++..+.++-.....+...+.. .........-. ..-..++.++.+.. .++...++.|.+.|..+.+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 455667777554555555444445555544 22222211111 34457788888774 4444456899999988887776
Q ss_pred EEcCCCCCeEEEEEecCCCEEEEEEC---CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 003445 96 TLTGHRSNCISVDFHPFGEFFASGSL---DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLWD 171 (819)
Q Consensus 96 ~l~~h~~~I~sl~fsp~g~~Lasgs~---Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs-~Dg~I~IwD 171 (819)
...... .-..+++.++++.+.++.. ++.+.+.|..+.+.+.....-..+ ..+++.|+|..++... .++.|.++|
T Consensus 111 ~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~ 188 (381)
T COG3391 111 SIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVID 188 (381)
T ss_pred Eeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEe
Confidence 665333 5568899999987777665 688999999988888776543344 8899999999776665 788999999
Q ss_pred CCCCeEEE-E----EecCCCCeEEEEEeCCCCEEEEEECC---CeEEEEECCCCeEEEEeCCCCC-CeeEEEEeCCCCEE
Q 003445 172 LTAGKLLH-D----FKCHEGQIQCIDFHPHEFLLATGSAD---RTVKFWDLETFELIGSAGPETS-GVRCLTFNPDGRTL 242 (819)
Q Consensus 172 l~t~~~i~-~----~~~h~~~I~sl~fspdg~~Lasgs~D---g~I~iwDl~~~~~l~~~~~~~~-~I~sl~fspdg~~L 242 (819)
........ . .. -...-..+.++|+|.++...... +.+...|..++........... ....+.++|+|.++
T Consensus 189 ~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~ 267 (381)
T COG3391 189 TSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAA 267 (381)
T ss_pred CCCcceeccccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEE
Confidence 77665553 1 11 12234678899999866665544 5899999999887766222222 56788999999999
Q ss_pred EEEECC--CEEEEEecCCceeee
Q 003445 243 LCGLHE--SLKVFSWEPIRCHDA 263 (819)
Q Consensus 243 asgs~d--~I~Vwd~~~~~~~~~ 263 (819)
.+.... .+.+.|..+......
T Consensus 268 yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 268 YVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred EEEecCCCeEEEEeCCCCceeee
Confidence 887444 466777666554443
No 339
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.87 E-value=0.01 Score=63.59 Aligned_cols=225 Identities=15% Similarity=0.148 Sum_probs=135.2
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE-----------
Q 003445 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT----------- 96 (819)
Q Consensus 28 ~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~----------- 96 (819)
+++.|+.|.++| +.+|+.........+. +...|..+...++-+.+++-+ |+.+.++++..-.....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 456788899998 9999983333333332 233499999999887776654 69999999875443331
Q ss_pred ---EcCCCCCeEEEE--EecCCC-EEEEEECCCcEEEEECCCC-----eEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003445 97 ---LTGHRSNCISVD--FHPFGE-FFASGSLDTNLKIWDIRKK-----GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (819)
Q Consensus 97 ---l~~h~~~I~sl~--fsp~g~-~Lasgs~Dg~I~IwDi~t~-----~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg 165 (819)
.......+...+ -...+. +|+++ ....|.+|..... .....+. -...+..++|. ++.++.|..++
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~ 158 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG 158 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc
Confidence 011223344444 112333 44444 4558888877653 3445554 34678899998 56788777554
Q ss_pred eEEEEECCCCeEEEEEecCC------------CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEE--EeCCCCCCee
Q 003445 166 TVKLWDLTAGKLLHDFKCHE------------GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIG--SAGPETSGVR 231 (819)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h~------------~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~--~~~~~~~~I~ 231 (819)
..+.|+.++.....+.... .++..+.. +++.+|++. |..-.+.|.. |+... .+.- ...+.
T Consensus 159 -f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~-G~~~r~~~i~W-~~~p~ 232 (275)
T PF00780_consen 159 -FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKN-GEPSRKSTIQW-SSAPQ 232 (275)
T ss_pred -eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCC-CCcCcccEEEc-CCchh
Confidence 6888998776544332111 22333333 445566553 4444444543 43332 1211 23456
Q ss_pred EEEEeCCCCEEEEEECCCEEEEEecCCceeeeeecc
Q 003445 232 CLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVG 267 (819)
Q Consensus 232 sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~ 267 (819)
.+++. ..||++-..+.|.||++.+++..+.+...
T Consensus 233 ~~~~~--~pyli~~~~~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 233 SVAYS--SPYLIAFSSNSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EEEEE--CCEEEEECCCEEEEEECcCCcEEEEEECC
Confidence 66663 45888888889999999999887776543
No 340
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.0076 Score=68.16 Aligned_cols=217 Identities=16% Similarity=0.172 Sum_probs=156.8
Q ss_pred EEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEE
Q 003445 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA---SGTIKLWDLEEAKIVR 95 (819)
Q Consensus 19 V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~---DG~I~IWDl~s~~~i~ 95 (819)
-.++++++.+.+.+++...++.|.+.|...........- ......++|++++..++.+.. ++++.+.|-.+++.+.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 346777776777788887889999999877777666552 226788999999987777655 6899999999999888
Q ss_pred EEcCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCeEEE-E----EecCCCCeEEEEEcCCCCEEEEEECC---Ce
Q 003445 96 TLTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRKKGCIH-T----YKGHTRGVNAIRFTPDGRWVVSGGED---NT 166 (819)
Q Consensus 96 ~l~~h~~~I~sl~fsp~g~~Lasgs-~Dg~I~IwDi~t~~~i~-~----~~~h~~~I~sl~fspdg~~L~sgs~D---g~ 166 (819)
.......+ ..+++.|+|+.++... .++.|.+.|........ . ...+ ..-..+.+.++|..++..... +.
T Consensus 155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEEECCCCCEEEEEeccCCCce
Confidence 86544445 8899999999766655 78899999977665553 1 2212 234578999999977766544 58
Q ss_pred EEEEECCCCeEEEEEecCCC-CeEEEEEeCCCCEEEEEEC-CCeEEEEECCCCeEEEEeCCCCC---CeeEEEEeCC
Q 003445 167 VKLWDLTAGKLLHDFKCHEG-QIQCIDFHPHEFLLATGSA-DRTVKFWDLETFELIGSAGPETS---GVRCLTFNPD 238 (819)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~-~I~sl~fspdg~~Lasgs~-Dg~I~iwDl~~~~~l~~~~~~~~---~I~sl~fspd 238 (819)
+...|..++.....-..-.. ....+.++|+|.++.+... .+.+.+.|..+............ .+..+++.+.
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 99999998877665221112 4567889999998888854 48899999998887766544322 3455555543
No 341
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.00046 Score=80.35 Aligned_cols=110 Identities=17% Similarity=0.263 Sum_probs=88.4
Q ss_pred eEEEEEcCCCCEEEEEEC----CCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEE
Q 003445 62 IDSVSFDSSEVLVAAGAA----SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH 137 (819)
Q Consensus 62 V~~l~fspdg~~Lasgs~----DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~ 137 (819)
-+-..|+|...++++++. .|.|.||- ++|++-+... ..-.+.+++|||..-.|+.|-.-|.+.+|...+.+.-.
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 345679999999888765 48888885 5666443332 12235679999988889999999999999988877666
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 138 TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT 173 (819)
Q Consensus 138 ~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~ 173 (819)
....|..+|..+.|+++|..++++..-|.+.+|.+.
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 667899999999999999999999999999999775
No 342
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.84 E-value=0.014 Score=66.69 Aligned_cols=206 Identities=12% Similarity=0.125 Sum_probs=116.5
Q ss_pred eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe------EEEEEcCCCCCeEEEEEecCC
Q 003445 40 KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK------IVRTLTGHRSNCISVDFHPFG 113 (819)
Q Consensus 40 ~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~------~i~~l~~h~~~I~sl~fsp~g 113 (819)
.|.||+. .|+.+..+.-..+.|.++.|..++.+++. ..||.+++||+.... .+....-....+....+..+|
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV-~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVV-QSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEE-EcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 4888885 56777666544489999999987766654 689999999986333 111111111222222333344
Q ss_pred CEEEEEECCCcEEEEECCCCe-EEEEEe---c-------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe
Q 003445 114 EFFASGSLDTNLKIWDIRKKG-CIHTYK---G-------HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182 (819)
Q Consensus 114 ~~Lasgs~Dg~I~IwDi~t~~-~i~~~~---~-------h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~ 182 (819)
++.-..++.+++..--... ....+. . +........++.+....+....++.+.+.+-...+. +.
T Consensus 140 --ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~ 214 (410)
T PF04841_consen 140 --IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID 214 (410)
T ss_pred --EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc
Confidence 3333345555554322221 111111 0 000000123444555555555556666444332211 22
Q ss_pred cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC-CCCeeEEEEeCCCCEEEEEECCCEEEEE
Q 003445 183 CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE-TSGVRCLTFNPDGRTLLCGLHESLKVFS 254 (819)
Q Consensus 183 ~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~-~~~I~sl~fspdg~~Lasgs~d~I~Vwd 254 (819)
..+++..|++||++++||.-..+|.+.+++..-.+.+..+... ......+.|.-++..++ ...+.+.++.
T Consensus 215 -~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l-~~~~~l~lvg 285 (410)
T PF04841_consen 215 -SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVL-SWEDELLLVG 285 (410)
T ss_pred -CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEE-EeCCEEEEEC
Confidence 2468999999999999999999999999987766666665544 44567888886643333 3344455443
No 343
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.00014 Score=83.81 Aligned_cols=195 Identities=17% Similarity=0.276 Sum_probs=123.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE-EcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEE
Q 003445 58 HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT-LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI 136 (819)
Q Consensus 58 h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~-l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i 136 (819)
|...|.--+++..+++++.|+.-|.+++|+-..++.... ..+..+.+..+..+++..++|.|+..|.|.++-+.....-
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 445566667778899999999999999999877665432 2234456677788888889999999999999988754321
Q ss_pred -----EEE-ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----eEEEEEecCCCCeEEEEEeCCCCEEEEEECC
Q 003445 137 -----HTY-KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG----KLLHDFKCHEGQIQCIDFHPHEFLLATGSAD 206 (819)
Q Consensus 137 -----~~~-~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~----~~i~~~~~h~~~I~sl~fspdg~~Lasgs~D 206 (819)
... +.|...|++++|++++..+++|...|.|.+-.+... -..+.+-...+.|..+... ++.+|++...
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~- 189 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLT- 189 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhh-
Confidence 111 247789999999999999999999999999888762 1112222235667666653 3334444333
Q ss_pred CeEEEEECCCCe--EEEEeCCCCC-CeeEEEEeCC----CCEEEEEECCCEEEEEec
Q 003445 207 RTVKFWDLETFE--LIGSAGPETS-GVRCLTFNPD----GRTLLCGLHESLKVFSWE 256 (819)
Q Consensus 207 g~I~iwDl~~~~--~l~~~~~~~~-~I~sl~fspd----g~~Lasgs~d~I~Vwd~~ 256 (819)
. -.+++++... .+..- ...+ .-...+|-|. .+-.+.+..-+.++|..+
T Consensus 190 r-~~Lc~tE~eti~QIG~k-~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead 244 (726)
T KOG3621|consen 190 R-CILCQTEAETITQIGKK-PRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEAD 244 (726)
T ss_pred h-hheeecchhHHHHhcCC-CcCCccccceEEeeccccCCCceEEEecCCCceEEee
Confidence 2 2344554332 22211 1112 1234455443 233333334456888765
No 344
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=0.0072 Score=66.00 Aligned_cols=222 Identities=15% Similarity=0.128 Sum_probs=139.9
Q ss_pred EEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC-
Q 003445 21 CLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG- 99 (819)
Q Consensus 21 ~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~- 99 (819)
+-.|.++.+.++.+--..+.|.-|+..+++... +. +.+.+.++..-..+..|+++ +.-+.+++.+++..+..+..
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~--~~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIAC--EHGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEE--ccccEEEeccCCceeEEeccc
Confidence 345666666677777777888889886554332 22 22334444443444444443 33467788776665333321
Q ss_pred ---C-CCCeEEEEEecCCCEEEEEEC-----------CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003445 100 ---H-RSNCISVDFHPFGEFFASGSL-----------DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (819)
Q Consensus 100 ---h-~~~I~sl~fsp~g~~Lasgs~-----------Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~D 164 (819)
. ......+...|+|.+.++... -|.|+.+|. .+..+..+..+-..-+.|+|+||++.|+.+...
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 1 123457778888876655433 134555554 455566666555566789999999888877654
Q ss_pred -CeEEEEECCC--C----e-EEEEEecCCCCeEEEEEeCCCCEEEEEECCC-eEEEEECCCCeEEEEeCCCCCCeeEEEE
Q 003445 165 -NTVKLWDLTA--G----K-LLHDFKCHEGQIQCIDFHPHEFLLATGSADR-TVKFWDLETFELIGSAGPETSGVRCLTF 235 (819)
Q Consensus 165 -g~I~IwDl~t--~----~-~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg-~I~iwDl~~~~~l~~~~~~~~~I~sl~f 235 (819)
+.|.-|++.. + + ....+....+..-.++...+|.+.+++..+| .|.+|+.+ ++++..+......+++++|
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 7788887752 1 1 1222223456667788888888876555554 89999998 9999888877677888888
Q ss_pred e-CCCCEEEEEECC
Q 003445 236 N-PDGRTLLCGLHE 248 (819)
Q Consensus 236 s-pdg~~Lasgs~d 248 (819)
- ++.+.|++.+..
T Consensus 263 gG~~~~~L~iTs~~ 276 (307)
T COG3386 263 GGPDLNTLYITSAR 276 (307)
T ss_pred eCCCcCEEEEEecC
Confidence 4 456677665543
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.80 E-value=0.0016 Score=74.27 Aligned_cols=195 Identities=15% Similarity=0.174 Sum_probs=122.7
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCC---CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE-ECCCe
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGED---HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG-AASGT 82 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~D---g~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasg-s~DG~ 82 (819)
+..+.+..-...+..-+|+|++..+.+..-.. ..+.++++.+++....+. ..+.-..-.|+|||+.|+.. ..||.
T Consensus 183 ~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 183 YNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred cceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCC
Confidence 34444555556777788999666654443222 459999998776655544 23334567899999876654 44554
Q ss_pred --EEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECC-C--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 003445 83 --IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD-T--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRW 157 (819)
Q Consensus 83 --I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~D-g--~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~ 157 (819)
|.+.|+..+...+ +....+.-..=.|+|+|++++..+.. | .|.++|.+.+.. ..+......-..-.|+|||++
T Consensus 262 ~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~ 339 (425)
T COG0823 262 PDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDK 339 (425)
T ss_pred ccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCE
Confidence 5566777666433 44333333466799999998877653 3 577778776654 333333333337889999999
Q ss_pred EEEEECC-Ce--EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC
Q 003445 158 VVSGGED-NT--VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA 205 (819)
Q Consensus 158 L~sgs~D-g~--I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~ 205 (819)
|+..+.. |. |.+.|+.++..+..+. .......-.|.++|..+...+.
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred EEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 9877643 44 7777777665444333 3334455677888877766554
No 346
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.79 E-value=0.0012 Score=76.41 Aligned_cols=133 Identities=19% Similarity=0.229 Sum_probs=94.1
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-----EEEE-cCC
Q 003445 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLS-GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI-----VRTL-TGH 100 (819)
Q Consensus 28 ~~~~Latgs~Dg~V~IWdl~~~~~i~~l~-~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~-----i~~l-~~h 100 (819)
.+.+++.|+.-|.+++|+-..+.....-. +-.+.+..+..+++..++|+|+..|.|.++-+..+.. +... +.|
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~ 123 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSH 123 (726)
T ss_pred CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccC
Confidence 66789999999999999976655443322 3344556667789999999999999999998875422 1111 237
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEECCCC----eEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 003445 101 RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK----GCIHTYKGHTRGVNAIRFTPDGRWVVSG 161 (819)
Q Consensus 101 ~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~----~~i~~~~~h~~~I~sl~fspdg~~L~sg 161 (819)
...|++++|++++..+++|...|.|..-.+... -..+.+-...+.|-.+.+. ++..|++.
T Consensus 124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVSt 187 (726)
T KOG3621|consen 124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVST 187 (726)
T ss_pred CceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhh
Confidence 789999999999999999999999998887762 1122223345667667665 33344433
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.78 E-value=0.012 Score=67.37 Aligned_cols=175 Identities=15% Similarity=0.165 Sum_probs=99.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEE
Q 003445 58 HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH 137 (819)
Q Consensus 58 h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~ 137 (819)
..-....+.++|+|++++++ .+|...|+.......... +.....+|.+. +.+|+-...+.|.|+.--+.....
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT-
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCccccce
Confidence 44567899999999999884 588888888555444332 23446789884 457777778889996322222212
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 003445 138 TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF 217 (819)
Q Consensus 138 ~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~ 217 (819)
.++. ...+..|-. |..|...+ ++.|.+||+.+++.+..+.. .+|..+.|+++|.+++..+.+ .+.+++....
T Consensus 104 ~i~~-~~~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 104 SIKL-PFSVEKIFG---GNLLGVKS-SDFICFYDWETGKLIRRIDV--SAVKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp -----SS-EEEEE----SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred EEcC-CcccceEEc---CcEEEEEC-CCCEEEEEhhHcceeeEEec--CCCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 3332 122344433 77777665 44899999999999999874 348999999999999999855 5777665432
Q ss_pred --------------eEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEE
Q 003445 218 --------------ELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKV 252 (819)
Q Consensus 218 --------------~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~V 252 (819)
..+..+ ...|.+..|..+ .++..+.+.++-
T Consensus 176 ~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d--~fiYtT~~~lkY 219 (443)
T PF04053_consen 176 AVAAIPEEGVEDAFELIHEI---SERIKSGCWVED--CFIYTTSNHLKY 219 (443)
T ss_dssp HHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TTEEEE
T ss_pred hcccccccCchhceEEEEEe---cceeEEEEEEcC--EEEEEcCCeEEE
Confidence 444433 456899999876 555444445544
No 348
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.75 E-value=0.0018 Score=73.90 Aligned_cols=115 Identities=15% Similarity=0.146 Sum_probs=83.0
Q ss_pred CCEEEEEEeeCCCcEEEEE----eCCCe----EEEEECCCCceE--EEe-cCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 17 STVNCLKIGRKSSRVLVTG----GEDHK----VNLWAIGKPNAI--LSL-SGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latg----s~Dg~----V~IWdl~~~~~i--~~l-~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (819)
....++.|+....+.+.|. +.+|. -.+|++...+.. ... -.....|.|++++|++..|+.|+.||.|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 4456778876555555554 23443 345666444321 111 146789999999999999999999999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 003445 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK 133 (819)
Q Consensus 86 WDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~ 133 (819)
||...+..... ...-....++|||+|..|++|+..|.+.+||+.-.
T Consensus 286 yD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 286 YDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 99877643322 24455688999999999999999999999998643
No 349
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.75 E-value=0.032 Score=63.68 Aligned_cols=241 Identities=15% Similarity=0.150 Sum_probs=133.7
Q ss_pred eEEEEEcCCCCEEEEE-ECCC----eEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCC-----------cE
Q 003445 62 IDSVSFDSSEVLVAAG-AASG----TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT-----------NL 125 (819)
Q Consensus 62 V~~l~fspdg~~Lasg-s~DG----~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg-----------~I 125 (819)
+....++|++++++.+ +..| .|+++|+++++.+...-... ....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3467889999988765 3344 59999999998765432111 122399999988877665443 37
Q ss_pred EEEECCCCeE--EEEEecCCCC--eEEEEEcCCCCEEEEEECC----CeEEEEECCCC----eEEEEEecCCCCeEEEEE
Q 003445 126 KIWDIRKKGC--IHTYKGHTRG--VNAIRFTPDGRWVVSGGED----NTVKLWDLTAG----KLLHDFKCHEGQIQCIDF 193 (819)
Q Consensus 126 ~IwDi~t~~~--i~~~~~h~~~--I~sl~fspdg~~L~sgs~D----g~I~IwDl~t~----~~i~~~~~h~~~I~sl~f 193 (819)
+.|.+.+... ...+...... ...+..++|+++|+..... ..+.+.|+..+ .....+......+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 8888876532 2344433322 5688899999998864432 35888898875 233333333334433333
Q ss_pred eCCCCEEEEEE---CCCeEEEEECCCCe---EEEEeCCCCC--CeeEEEEeCCCCEEEE-EECC---CEEEEEec-CCce
Q 003445 194 HPHEFLLATGS---ADRTVKFWDLETFE---LIGSAGPETS--GVRCLTFNPDGRTLLC-GLHE---SLKVFSWE-PIRC 260 (819)
Q Consensus 194 spdg~~Lasgs---~Dg~I~iwDl~~~~---~l~~~~~~~~--~I~sl~fspdg~~Las-gs~d---~I~Vwd~~-~~~~ 260 (819)
+.++.+++... .++.|.-.++.... ....+..+.. .+..+.. .+.+|+. ...+ .|++|++. ....
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~ 362 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKES 362 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEE
Confidence 33444444443 24577778887765 2224444444 3445544 4445554 3344 38888888 4444
Q ss_pred eeeeeccccceeEeEe-cCCCEEEEEEc----CCeEEEEEecCCceeeee
Q 003445 261 HDAVDVGWSRLSDLNV-HEGKLLGCSYN----QSCVGVWVVDISRIEPYT 305 (819)
Q Consensus 261 ~~~~~~~~s~i~~l~~-~dg~lLa~~~~----Dg~V~IW~ld~~~~~p~~ 305 (819)
..........+..+.. .++..+..... .+.+..||+.+++...+.
T Consensus 363 ~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 363 REIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred eeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 3333223333333332 33333332221 367888888888876543
No 350
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.75 E-value=0.0013 Score=74.95 Aligned_cols=194 Identities=18% Similarity=0.155 Sum_probs=122.1
Q ss_pred CceEEEecCCCCCeEEEEEcCCCCEEEEE---ECC-CeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEE-CCC
Q 003445 49 PNAILSLSGHTSGIDSVSFDSSEVLVAAG---AAS-GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS-LDT 123 (819)
Q Consensus 49 ~~~i~~l~~h~~~V~~l~fspdg~~Lasg---s~D-G~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs-~Dg 123 (819)
+.....+..-...+..-+|++++..++.. ... ..+.++|+.+++....+. ..+.-..-+|+|||+.|+... .||
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCC
Confidence 44444455455677778899998765443 222 469999999887555444 223334568999999866554 455
Q ss_pred --cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCC
Q 003445 124 --NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED-N--TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF 198 (819)
Q Consensus 124 --~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~D-g--~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~ 198 (819)
.|+++|+..+... .+..-.+.-..-.|+|||++|+..++. | .|.++|+..+.. ..+....+.-..-.|+|||.
T Consensus 261 ~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~ 338 (425)
T COG0823 261 SPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGD 338 (425)
T ss_pred CccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCC
Confidence 4677788777633 344333333467899999999877654 3 578888876654 33332333333778999999
Q ss_pred EEEEEECC-Ce--EEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003445 199 LLATGSAD-RT--VKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (819)
Q Consensus 199 ~Lasgs~D-g~--I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs 246 (819)
+|+..+.. |. |.++|+.++..+..+ ........-.|.++|+.+...+
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEec
Confidence 99888753 43 666777665533222 2223344566788888777543
No 351
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.74 E-value=0.0026 Score=72.61 Aligned_cols=116 Identities=16% Similarity=0.233 Sum_probs=82.7
Q ss_pred CCeEEEEEcC-CCCEEEEE----ECCCe----EEEEECCCCeEEEE---EcCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 003445 60 SGIDSVSFDS-SEVLVAAG----AASGT----IKLWDLEEAKIVRT---LTGHRSNCISVDFHPFGEFFASGSLDTNLKI 127 (819)
Q Consensus 60 ~~V~~l~fsp-dg~~Lasg----s~DG~----I~IWDl~s~~~i~~---l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~I 127 (819)
....++.|+- +...+.+. +.+|. -.+|++..++..+. --.....+.+++++|+...|+.|+.||.|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 3446777765 33444443 22343 34666655443211 1246788999999999999999999999999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003445 128 WDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL 177 (819)
Q Consensus 128 wDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~ 177 (819)
||...+..... ...-..+.++|+|+|..+++|+..|.|.+||+.-...
T Consensus 286 yD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 286 YDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred EEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 99887744333 2345578999999999999999999999999875543
No 352
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.74 E-value=0.038 Score=60.33 Aligned_cols=265 Identities=11% Similarity=0.087 Sum_probs=157.5
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCeEEEEECCCCeEEEEEcCC---CC---
Q 003445 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA----------ASGTIKLWDLEEAKIVRTLTGH---RS--- 102 (819)
Q Consensus 39 g~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs----------~DG~I~IWDl~s~~~i~~l~~h---~~--- 102 (819)
+.++|+|..+++.+-.+.. +-.-.+..+|+++.+++++ ....|.+||..+-.....+.-. ..
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999988888777663 3344577899999888743 3567999999998877654321 11
Q ss_pred -CeEEEEEecCCCEEEEEE--CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEE
Q 003445 103 -NCISVDFHPFGEFFASGS--LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT-AGKLL 178 (819)
Q Consensus 103 -~I~sl~fsp~g~~Lasgs--~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~-t~~~i 178 (819)
....++++.+++++++.. --..|.|.|+..++.+..+.. .+ +..+-=+ ..+-+.+-|.||.+.-..+. .|+..
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PG-C~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PG-CWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TS-EEEEEEE-ETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CC-EEEEEec-CCCceEEEecCCceEEEEECCCCCEe
Confidence 123457788888877653 345789999999998888763 22 2222111 22457788899999888887 45544
Q ss_pred EEE----ecCCCCe-EEEEEeCCCCEEEEEECCCeEEEEECCCCeEE--EEeCCC----------CCCeeEEEEeCCCCE
Q 003445 179 HDF----KCHEGQI-QCIDFHPHEFLLATGSADRTVKFWDLETFELI--GSAGPE----------TSGVRCLTFNPDGRT 241 (819)
Q Consensus 179 ~~~----~~h~~~I-~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l--~~~~~~----------~~~I~sl~fspdg~~ 241 (819)
... .....++ ..-++...+..++.-+.+|.|+-.|+...... ..+... .+.-.-+++++....
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 222 1112222 23345555556666788999999988765422 122110 133456888887666
Q ss_pred EEEEEC----C-----C--EEEEEecCCceeeeeeccccceeEeEe-cCC-CEEEE-EEcCCeEEEEEecCCceeeeeec
Q 003445 242 LLCGLH----E-----S--LKVFSWEPIRCHDAVDVGWSRLSDLNV-HEG-KLLGC-SYNQSCVGVWVVDISRIEPYTIG 307 (819)
Q Consensus 242 Lasgs~----d-----~--I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg-~lLa~-~~~Dg~V~IW~ld~~~~~p~~~~ 307 (819)
|++-.+ + + |-+||..+.+....+..... +..+.+ .+. .+|.+ ...++.+.|||..+++...-..+
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~-~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP-IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE-ESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc-cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 665321 1 2 55555566666666655432 333433 343 45544 44679999999999988765554
Q ss_pred cc
Q 003445 308 SV 309 (819)
Q Consensus 308 ~~ 309 (819)
.+
T Consensus 331 lG 332 (342)
T PF06433_consen 331 LG 332 (342)
T ss_dssp -S
T ss_pred cC
Confidence 43
No 353
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.73 E-value=0.0026 Score=76.72 Aligned_cols=193 Identities=18% Similarity=0.252 Sum_probs=121.8
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC-CceEE--Ee------cCCCC-CeEEEEEcCCCCEEEEE-ECCCeE
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-PNAIL--SL------SGHTS-GIDSVSFDSSEVLVAAG-AASGTI 83 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~-~~~i~--~l------~~h~~-~V~~l~fspdg~~Lasg-s~DG~I 83 (819)
+.+...+|+......+-+++.+ ..|-|+.... +..-. .+ .|..- +-..+-...+..+|+.- .....|
T Consensus 429 ~~~~n~~Lavg~k~DrSfVvRg--~~igVFk~~~~~~l~f~t~i~~i~~~~g~~~~P~k~mL~~~d~~mil~~~~~~~~l 506 (794)
T PF08553_consen 429 DGEKNSSLAVGYKNDRSFVVRG--SKIGVFKNTDDDGLEFSTAISNISTPKGKNFTPKKAMLHDQDRNMILLDPNNPNKL 506 (794)
T ss_pred CCCccceeEeeeccCceEEECC--CcEeEEECCCCCceeeeEEecccccCCCcccCcchhhhhccccceEeecCCCCCce
Confidence 4556777777754344444443 2477777642 22111 11 11100 11111112233444443 346889
Q ss_pred EEEECCCCeEEEEEcCCCCC-eEEEEEecC-------CCEEEEEECCCcEEEEECCCCe--EEE----EEecCCCCeEEE
Q 003445 84 KLWDLEEAKIVRTLTGHRSN-CISVDFHPF-------GEFFASGSLDTNLKIWDIRKKG--CIH----TYKGHTRGVNAI 149 (819)
Q Consensus 84 ~IWDl~s~~~i~~l~~h~~~-I~sl~fsp~-------g~~Lasgs~Dg~I~IwDi~t~~--~i~----~~~~h~~~I~sl 149 (819)
+-.|++.|+++..+..|... |.. +.|+ ....+.|-.+..|..||.|-.. ++. .+ .......|+
T Consensus 507 y~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~Fs~~ 583 (794)
T PF08553_consen 507 YKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNNFSCF 583 (794)
T ss_pred EEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCCCceEE
Confidence 99999999999999987754 444 4443 2345667778889999998643 232 12 134567888
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEC
Q 003445 150 RFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (819)
Q Consensus 150 ~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl 214 (819)
+-+.+| +||+|+.+|.|++||--..+....+.+-..+|.+|+.+.||+||++.+ +..|.+++.
T Consensus 584 aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 584 ATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred EecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 888777 589999999999999533333334556678999999999999998876 566777775
No 354
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.71 E-value=0.024 Score=64.62 Aligned_cols=239 Identities=10% Similarity=0.050 Sum_probs=130.2
Q ss_pred EEEEEEeeCCCcEEEEEeCCC----eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCC-----------eE
Q 003445 19 VNCLKIGRKSSRVLVTGGEDH----KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASG-----------TI 83 (819)
Q Consensus 19 V~~lafsp~~~~~Latgs~Dg----~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG-----------~I 83 (819)
+...+++|++..++++-+..| .++++|+.+++.+...-... ....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 345778896655555545444 59999999997765321111 123399999988766655433 37
Q ss_pred EEEECCCCeE--EEEEcCCCCC--eEEEEEecCCCEEEEEECC----CcEEEEECCCC-----eEEEEEecCCCCeEEEE
Q 003445 84 KLWDLEEAKI--VRTLTGHRSN--CISVDFHPFGEFFASGSLD----TNLKIWDIRKK-----GCIHTYKGHTRGVNAIR 150 (819)
Q Consensus 84 ~IWDl~s~~~--i~~l~~h~~~--I~sl~fsp~g~~Lasgs~D----g~I~IwDi~t~-----~~i~~~~~h~~~I~sl~ 150 (819)
+.|.+.+... ...+...... ...+..++++++++..... ..+++.|+..+ ..........+....+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 8888876532 2344433332 6788899999987764432 35888888874 33333333333333343
Q ss_pred EcCCCCEEEEEE---CCCeEEEEECCCCeE---EEEEecCCCCeEEEEEeCCCCEEE-EEECCC--eEEEEECC-CCeEE
Q 003445 151 FTPDGRWVVSGG---EDNTVKLWDLTAGKL---LHDFKCHEGQIQCIDFHPHEFLLA-TGSADR--TVKFWDLE-TFELI 220 (819)
Q Consensus 151 fspdg~~L~sgs---~Dg~I~IwDl~t~~~---i~~~~~h~~~I~sl~fspdg~~La-sgs~Dg--~I~iwDl~-~~~~l 220 (819)
.. .+.+++... ..+.|...++..... ...+..+...+.-..+...+.+|+ ....++ .|++||+. .....
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~ 363 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESR 363 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEE
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEe
Confidence 33 444444332 246788888877652 324444554333333334444444 444444 68999999 54444
Q ss_pred EEeCCCCCCeeEEEEeCCCCEEEEEEC--C---CEEEEEecCCc
Q 003445 221 GSAGPETSGVRCLTFNPDGRTLLCGLH--E---SLKVFSWEPIR 259 (819)
Q Consensus 221 ~~~~~~~~~I~sl~fspdg~~Lasgs~--d---~I~Vwd~~~~~ 259 (819)
.......+.|..+...+++..+..... - .+..||+.+++
T Consensus 364 ~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 364 EIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred eecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 444444555667766666666654322 2 35555555544
No 355
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.61 E-value=0.063 Score=58.65 Aligned_cols=240 Identities=12% Similarity=0.119 Sum_probs=146.9
Q ss_pred EEEEeeCCCcEEEEE----------eCCCeEEEEECCCCceEEEecCCC-------CCeEEEEEcCCCCEEEEEEC--CC
Q 003445 21 CLKIGRKSSRVLVTG----------GEDHKVNLWAIGKPNAILSLSGHT-------SGIDSVSFDSSEVLVAAGAA--SG 81 (819)
Q Consensus 21 ~lafsp~~~~~Latg----------s~Dg~V~IWdl~~~~~i~~l~~h~-------~~V~~l~fspdg~~Lasgs~--DG 81 (819)
.+.++|+ ++.++++ -..-.|.+||..+-.....+.--. .....+.++.|+++++.... ..
T Consensus 40 ~~~~spd-gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 40 NVALSPD-GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEE-TT-SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred ceeECCC-CCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 3567774 4445543 234569999999887776543211 12344678899998877644 46
Q ss_pred eEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC-CCeEEEEEe----cCCCC-eEEEEEcCCC
Q 003445 82 TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR-KKGCIHTYK----GHTRG-VNAIRFTPDG 155 (819)
Q Consensus 82 ~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~-t~~~i~~~~----~h~~~-I~sl~fspdg 155 (819)
.|.|.|+..++.+..+.- . .|..+--.. .+-|.+-|.||.+.-..+. .|+...+.. ....+ +..-++...+
T Consensus 119 SVtVVDl~~~kvv~ei~~-P-GC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~ 195 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDT-P-GCWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG 195 (342)
T ss_dssp EEEEEETTTTEEEEEEEG-T-SEEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred eEEEEECCCCceeeeecC-C-CEEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence 799999999999888763 2 233332222 2458888899999999887 455443221 11222 2233445555
Q ss_pred CEEEEEECCCeEEEEECCCCeEEE--EEecC----------CCCeEEEEEeCCCCEEEEEEC---CC-------eEEEEE
Q 003445 156 RWVVSGGEDNTVKLWDLTAGKLLH--DFKCH----------EGQIQCIDFHPHEFLLATGSA---DR-------TVKFWD 213 (819)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~~i~--~~~~h----------~~~I~sl~fspdg~~Lasgs~---Dg-------~I~iwD 213 (819)
.+++--+.+|.|+-.|+....... .+..- .+.-.-+++++..+.|++.-. +| .|.+||
T Consensus 196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 566667899999999987654322 22110 122345778876555554321 11 599999
Q ss_pred CCCCeEEEEeCCCCCCeeEEEEeCCCC-EEEEEEC--CCEEEEEecCCceeeeee
Q 003445 214 LETFELIGSAGPETSGVRCLTFNPDGR-TLLCGLH--ESLKVFSWEPIRCHDAVD 265 (819)
Q Consensus 214 l~~~~~l~~~~~~~~~I~sl~fspdg~-~Lasgs~--d~I~Vwd~~~~~~~~~~~ 265 (819)
+.+++.+..+... .++.+|..+.+.+ +|++.+. +.+.|||..+++....+.
T Consensus 276 ~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 276 LKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp TTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred CCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 9999999988653 4578999999877 4444333 359999999988776654
No 356
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.59 E-value=0.088 Score=58.58 Aligned_cols=261 Identities=13% Similarity=0.107 Sum_probs=128.6
Q ss_pred ECCCCceEEEecCCCCCeEEE-----EEcCCCCEEEEEEC-C--CeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEE
Q 003445 45 AIGKPNAILSLSGHTSGIDSV-----SFDSSEVLVAAGAA-S--GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFF 116 (819)
Q Consensus 45 dl~~~~~i~~l~~h~~~V~~l-----~fspdg~~Lasgs~-D--G~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~L 116 (819)
|..+|..+..+..+......+ +|.++|+.|+.++. + ..+.+.|+.+++..+...+.........++++++.+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 556777777776444333323 56778875555544 4 467777899998877665433333356678888888
Q ss_pred EEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEc--CCCCEEEEEEC----------------------CCeEEEEEC
Q 003445 117 ASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFT--PDGRWVVSGGE----------------------DNTVKLWDL 172 (819)
Q Consensus 117 asgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fs--pdg~~L~sgs~----------------------Dg~I~IwDl 172 (819)
+.......|+-.|+++++....+......+-...|. .|+..++-.-. ...|.-.|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 776667789999999988766666556655545553 45665442211 235667788
Q ss_pred CCCeEEEEEecCCCCeEEEEEeCCCCEEEE-EEC------CCeEEEEECCCCeEEEEeCCC--CCCeeEEEEeCCCCEEE
Q 003445 173 TAGKLLHDFKCHEGQIQCIDFHPHEFLLAT-GSA------DRTVKFWDLETFELIGSAGPE--TSGVRCLTFNPDGRTLL 243 (819)
Q Consensus 173 ~t~~~i~~~~~h~~~I~sl~fspdg~~Las-gs~------Dg~I~iwDl~~~~~l~~~~~~--~~~I~sl~fspdg~~La 243 (819)
.+|+....+. ....+..+.|+|...-+++ |.+ |..|.+.+... .....+..+ ...+..=-|.|||..|.
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg-~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG-SNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEEEEEEEE-TTSS-EE
T ss_pred CCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC-CcceeeecCCCCcccccccccCCCCEEE
Confidence 8887655555 4567889999997554444 432 22454445443 333333322 23345566899998887
Q ss_pred EEE--CCC----EEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCC----------------eEEEEEecCCce
Q 003445 244 CGL--HES----LKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQS----------------CVGVWVVDISRI 301 (819)
Q Consensus 244 sgs--~d~----I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg----------------~V~IW~ld~~~~ 301 (819)
.-+ .++ |.-++.++.+........++ ......+||++++.-+.|. .|+++++..++.
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~-~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~ 332 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRRLMEMPWC-SHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF 332 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEEEEEE-SE-EEEEE-TTSSEEEEEE-------------------EEEEEETTTTEE
T ss_pred EEeecCCCCceEEEeeCCCCCCceEEEeCCce-eeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCce
Confidence 422 232 44445555544444444442 2333447888887655542 445556655555
Q ss_pred eeeeecc
Q 003445 302 EPYTIGS 308 (819)
Q Consensus 302 ~p~~~~~ 308 (819)
..+..+.
T Consensus 333 ~~l~~h~ 339 (386)
T PF14583_consen 333 RKLARHD 339 (386)
T ss_dssp EEEEE--
T ss_pred eeeeecc
Confidence 5444433
No 357
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.53 E-value=0.016 Score=64.74 Aligned_cols=227 Identities=15% Similarity=0.164 Sum_probs=129.2
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec-C-------C---------CCCeEEEEEcCCCCEEEEEE
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS-G-------H---------TSGIDSVSFDSSEVLVAAGA 78 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~-~-------h---------~~~V~~l~fspdg~~Lasgs 78 (819)
...+....|+|+ ++.++... ++.|.+++..++....... | - -+.-..+-|+||+++|+...
T Consensus 42 ~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SS-STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccccceeecC-CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 467889999995 55566554 5789999987664443221 2 0 11235688999999888754
Q ss_pred CC-C-----------------------------------eEEEEECCCCeEEE--EE---cCCCCCeEEEEEecCCCEEE
Q 003445 79 AS-G-----------------------------------TIKLWDLEEAKIVR--TL---TGHRSNCISVDFHPFGEFFA 117 (819)
Q Consensus 79 ~D-G-----------------------------------~I~IWDl~s~~~i~--~l---~~h~~~I~sl~fsp~g~~La 117 (819)
.| . .+.++|+.+++... .. ......+..+.|.+++..|+
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 43 1 23344555444321 11 12344577889999988444
Q ss_pred EEE--CC---CcEEEEECCCCeEEEEEec-CCCCe---EEEEEc-CCCC-EEEEEECCCe--EEEEECCCCeEEEEEecC
Q 003445 118 SGS--LD---TNLKIWDIRKKGCIHTYKG-HTRGV---NAIRFT-PDGR-WVVSGGEDNT--VKLWDLTAGKLLHDFKCH 184 (819)
Q Consensus 118 sgs--~D---g~I~IwDi~t~~~i~~~~~-h~~~I---~sl~fs-pdg~-~L~sgs~Dg~--I~IwDl~t~~~i~~~~~h 184 (819)
..- .+ ..+.++|..++.+...+.. ....| ..+.|. +++. +|.....+|. |.+++...+.. ..+...
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G 278 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSG 278 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-S
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccC
Confidence 433 22 2467778877655433322 22222 355554 5555 4445556664 66777776653 345544
Q ss_pred CCCeEE-EEEeCCCCEEE-EEEC----CCeEEEEECC-CCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003445 185 EGQIQC-IDFHPHEFLLA-TGSA----DRTVKFWDLE-TFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (819)
Q Consensus 185 ~~~I~s-l~fspdg~~La-sgs~----Dg~I~iwDl~-~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs 246 (819)
...|.. +.|++++..|+ ++.. ...|+..++. .+. +..+......-..+.|+|+|++++...
T Consensus 279 ~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~-~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 279 DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE-PKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE-EEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC-eEeccCCCCCceEEEECCCCCEEEEEE
Confidence 556744 67888866554 4443 2357777777 444 444544433337999999999998554
No 358
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.52 E-value=0.026 Score=64.77 Aligned_cols=226 Identities=13% Similarity=0.105 Sum_probs=115.8
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (819)
+.++....-....+.++| +++++++ +.||...||.......... +.-..++|...++ +|+-..+++|.++.-
T Consensus 25 ~k~lg~~~~~p~~ls~np-ngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 25 VKELGSCEIYPQSLSHNP-NGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKN 96 (443)
T ss_dssp -EEEEE-SS--SEEEE-T-TSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEET
T ss_pred eccCCCCCcCCeeEEECC-CCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEc
Confidence 345555556688999999 6676666 4578888888443333322 2335688988555 556666888999632
Q ss_pred CCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003445 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVK 168 (819)
Q Consensus 89 ~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~ 168 (819)
-..+....+... ..+..+-. |..|+..+.+ .|.+||+.+++.+..+... +|..+.|+++|++++..+.+ .+.
T Consensus 97 ~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~ 168 (443)
T PF04053_consen 97 FKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIY 168 (443)
T ss_dssp TEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEE
T ss_pred CccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEE
Confidence 222222233311 23344322 7777777654 8999999999999998743 38999999999999988755 667
Q ss_pred EEECCCC-----------eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeC
Q 003445 169 LWDLTAG-----------KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP 237 (819)
Q Consensus 169 IwDl~t~-----------~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fsp 237 (819)
|++.... ..+..+..-...|.+.+|.-+ .++-.+.. .|+.| -.|+. ..+..-..+++=+.+.+
T Consensus 169 il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~-~~i~~ld~~~yllgy~~ 242 (443)
T PF04053_consen 169 ILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYL--VNGET-GIIAHLDKPLYLLGYLP 242 (443)
T ss_dssp EEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEE--ETTEE-EEEEE-SS--EEEEEET
T ss_pred EEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCc-ceEEEcCCceEEEEEEc
Confidence 7665432 022222222467889999866 33333333 66663 33332 12222234566666666
Q ss_pred CCCEEEEEECC-CEEEEEec
Q 003445 238 DGRTLLCGLHE-SLKVFSWE 256 (819)
Q Consensus 238 dg~~Lasgs~d-~I~Vwd~~ 256 (819)
+.+.++....+ .+..+.++
T Consensus 243 ~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 243 KENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp TTTEEEEE-TT--EEEEE--
T ss_pred cCCEEEEEECCCCEEEEEEC
Confidence 55555555433 45555544
No 359
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.50 E-value=0.069 Score=62.97 Aligned_cols=236 Identities=15% Similarity=0.158 Sum_probs=140.6
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCC--CC--CeEEEEEcCCCCEEEEEE------CCCeEEEEECCCCeEEEEEcCC
Q 003445 31 VLVTGGEDHKVNLWAIGKPNAILSLSGH--TS--GIDSVSFDSSEVLVAAGA------ASGTIKLWDLEEAKIVRTLTGH 100 (819)
Q Consensus 31 ~Latgs~Dg~V~IWdl~~~~~i~~l~~h--~~--~V~~l~fspdg~~Lasgs------~DG~I~IWDl~s~~~i~~l~~h 100 (819)
.++.++.|+.|.-.|..+++.+...... .. .+.+--.--++ .|+++. .+|.|..+|.++|+.+-.+..-
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~ 200 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV 200 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence 4667778999999999999998876521 11 11111001134 444543 2689999999999887664321
Q ss_pred CC-------------------------------Ce-EEEEEecCCCEEEEEECC-----C-----------cEEEEECCC
Q 003445 101 RS-------------------------------NC-ISVDFHPFGEFFASGSLD-----T-----------NLKIWDIRK 132 (819)
Q Consensus 101 ~~-------------------------------~I-~sl~fsp~g~~Lasgs~D-----g-----------~I~IwDi~t 132 (819)
.. .+ ..+.+.+...++..+..+ + .|.-.|+++
T Consensus 201 p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T 280 (527)
T TIGR03075 201 PGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT 280 (527)
T ss_pred CCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc
Confidence 10 11 123555555666655421 2 678889999
Q ss_pred CeEEEEEecCCCCeE---------EEEEcCCCC---EEEEEECCCeEEEEECCCCeEEEE--------Ee---c-CCC-C
Q 003445 133 KGCIHTYKGHTRGVN---------AIRFTPDGR---WVVSGGEDNTVKLWDLTAGKLLHD--------FK---C-HEG-Q 187 (819)
Q Consensus 133 ~~~i~~~~~h~~~I~---------sl~fspdg~---~L~sgs~Dg~I~IwDl~t~~~i~~--------~~---~-h~~-~ 187 (819)
++....++.....++ -+.+..+|+ .++.+..+|.+++.|.++|+.+.. +. . ..+ +
T Consensus 281 G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p 360 (527)
T TIGR03075 281 GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRP 360 (527)
T ss_pred CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCC
Confidence 999888875322222 122224665 777899999999999999988622 10 0 000 0
Q ss_pred e----------------------------EEEEEeCCCCEEEEEECC---------------------------------
Q 003445 188 I----------------------------QCIDFHPHEFLLATGSAD--------------------------------- 206 (819)
Q Consensus 188 I----------------------------~sl~fspdg~~Lasgs~D--------------------------------- 206 (819)
+ ..++++|+..+++....+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~ 440 (527)
T TIGR03075 361 IEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHM 440 (527)
T ss_pred ccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCc
Confidence 0 125566665555443322
Q ss_pred CeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE-CCCEEEEEecCCceeeeeeccc
Q 003445 207 RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL-HESLKVFSWEPIRCHDAVDVGW 268 (819)
Q Consensus 207 g~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs-~d~I~Vwd~~~~~~~~~~~~~~ 268 (819)
|.|.-||+.+++.............+.... .|.+++.+. ++.++.||.++++.+-.+..+.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t-~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT-AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE-CCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 457778888888777654332222222222 444666665 4468999999988876665553
No 360
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.46 E-value=0.021 Score=64.73 Aligned_cols=228 Identities=17% Similarity=0.218 Sum_probs=125.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC--------
Q 003445 61 GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK-------- 132 (819)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t-------- 132 (819)
.|+.+.|.++..-|++|..+|.|.||.+...+.-. ......-....+.+-+ ..++.-.+.|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~~------~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRFS------LNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccccc------ccCCCcceEEehhhCCccccc
Confidence 58899999999999999999999999886543322 0000111111221110 1112223334432
Q ss_pred -CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec--------CCCCeEEEEEeC-----CC-
Q 003445 133 -KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC--------HEGQIQCIDFHP-----HE- 197 (819)
Q Consensus 133 -~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~--------h~~~I~sl~fsp-----dg- 197 (819)
..+...+....++|++++.+ |=-+++.|+.+|.+.|.|+|....++.-.. ....++++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 12344455568899999998 555899999999999999998888776332 223578888863 33
Q ss_pred --CEEEEEECCCeEEEEECCC---Ce----EEEEeCCCCCCeeEEE-EeCC---------------------CCEEEEEE
Q 003445 198 --FLLATGSADRTVKFWDLET---FE----LIGSAGPETSGVRCLT-FNPD---------------------GRTLLCGL 246 (819)
Q Consensus 198 --~~Lasgs~Dg~I~iwDl~~---~~----~l~~~~~~~~~I~sl~-fspd---------------------g~~Lasgs 246 (819)
-.|++|...|.+.+|.+.- +. .......+.++|..+. |+.+ ..++++++
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 4889999999999998741 21 1222234556666554 4322 12677777
Q ss_pred CCCEEEEEecCCceeeeeeccccce-eEe-E-----ecCCCEEEEEEcCCeEEEEEecC
Q 003445 247 HESLKVFSWEPIRCHDAVDVGWSRL-SDL-N-----VHEGKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 247 ~d~I~Vwd~~~~~~~~~~~~~~s~i-~~l-~-----~~dg~lLa~~~~Dg~V~IW~ld~ 298 (819)
...++|+...+.++..... ..... ..+ . ...+..|+|-..+|.|+++.+..
T Consensus 234 e~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred ccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence 8889999988766544332 11111 111 1 23567888889999999997765
No 361
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.015 Score=65.58 Aligned_cols=142 Identities=18% Similarity=0.207 Sum_probs=101.5
Q ss_pred CCCE-EEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCC-------EEEEEECCCcEEEEECCCCe--EEEEE
Q 003445 70 SEVL-VAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE-------FFASGSLDTNLKIWDIRKKG--CIHTY 139 (819)
Q Consensus 70 dg~~-Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~-------~Lasgs~Dg~I~IwDi~t~~--~i~~~ 139 (819)
+.++ |..+.....|+-.|++.|+++..+.-+.. |.-+.+.|+.+ .-+.|-.|..|.-||.|-.. .+..-
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 3443 44455567789999999999999997766 88888888754 23445567889999988332 22222
Q ss_pred ecC----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEEC
Q 003445 140 KGH----TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL-LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (819)
Q Consensus 140 ~~h----~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~-i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl 214 (819)
++| .....|++-..+| +|++|+.+|.|++||- .+.. ...+.+...+|..+..+.+|++|++.+ +..+.+.++
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 222 2346677777666 6899999999999997 4443 344667788999999999999988765 566777665
Q ss_pred C
Q 003445 215 E 215 (819)
Q Consensus 215 ~ 215 (819)
.
T Consensus 500 ~ 500 (644)
T KOG2395|consen 500 L 500 (644)
T ss_pred e
Confidence 3
No 362
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.45 E-value=0.15 Score=56.80 Aligned_cols=274 Identities=12% Similarity=0.082 Sum_probs=133.5
Q ss_pred EEeeCCCcEEEEEeCCCe--EEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCC
Q 003445 23 KIGRKSSRVLVTGGEDHK--VNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGH 100 (819)
Q Consensus 23 afsp~~~~~Latgs~Dg~--V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h 100 (819)
+|.+++.++|+++..||. +++.|+.+++..+...+-........++++.+.++-......|...|+.+.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 345566677777776665 555577777766655433233335667788888766666678999999999877667666
Q ss_pred CCCeEEEEEe--cCCCEEEEEEC---C-------------------CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 003445 101 RSNCISVDFH--PFGEFFASGSL---D-------------------TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR 156 (819)
Q Consensus 101 ~~~I~sl~fs--p~g~~Lasgs~---D-------------------g~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~ 156 (819)
...+-...|. .++..++..-. | ..|.-.|+.+|+....+. ....+..+.|+|...
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP 200 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC
Confidence 6666556664 34555433211 1 246667888877655554 466788999999554
Q ss_pred EEEEEECCC-----eEEEEECCC-CeEEEEEecCC--CCeEEEEEeCCCCEEEEEE-----CCCeEEEEECCCCeEEEEe
Q 003445 157 WVVSGGEDN-----TVKLWDLTA-GKLLHDFKCHE--GQIQCIDFHPHEFLLATGS-----ADRTVKFWDLETFELIGSA 223 (819)
Q Consensus 157 ~L~sgs~Dg-----~I~IwDl~t-~~~i~~~~~h~--~~I~sl~fspdg~~Lasgs-----~Dg~I~iwDl~~~~~l~~~ 223 (819)
.+++=+..| .-+||-+++ +.....+..+. ..+..=-|.|||..|.--+ .+..|.-+|+.+++.....
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~ 280 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM 280 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence 444443332 124554432 33333333222 2244456889988665532 2446778888887654322
Q ss_pred CCCCCCeeEEEEeCCCCEEEEEECC-----------------CEEEEEecCCceeeeeec--ccc---------ceeEeE
Q 003445 224 GPETSGVRCLTFNPDGRTLLCGLHE-----------------SLKVFSWEPIRCHDAVDV--GWS---------RLSDLN 275 (819)
Q Consensus 224 ~~~~~~I~sl~fspdg~~Lasgs~d-----------------~I~Vwd~~~~~~~~~~~~--~~s---------~i~~l~ 275 (819)
.. .+...+.-++||++++.-+.+ -|.+++.+..+....... .|. .-..-+
T Consensus 281 ~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~F 358 (386)
T PF14583_consen 281 EM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSF 358 (386)
T ss_dssp EE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE
T ss_pred eC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCcc
Confidence 21 134456667899988743322 133455554443322211 111 112234
Q ss_pred ecCCCEEE-EEEcCCeEEEEEecCC
Q 003445 276 VHEGKLLG-CSYNQSCVGVWVVDIS 299 (819)
Q Consensus 276 ~~dg~lLa-~~~~Dg~V~IW~ld~~ 299 (819)
.+||+.++ .+...|...||-++..
T Consensus 359 SPDgk~VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 359 SPDGKWVLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp -TTSSEEEEEE-TTSS-EEEEEE--
T ss_pred CCCCCEEEEECCCCCCccEEEEeCc
Confidence 47787665 6666788888876654
No 363
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.43 E-value=3.9e-05 Score=87.09 Aligned_cols=196 Identities=20% Similarity=0.335 Sum_probs=129.8
Q ss_pred CCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCeE--EEEEcCCCCCeEEEEEecC-CCEEEEEE----CCCcEEEE
Q 003445 58 HTSGIDSVSFDSS--EVLVAAGAASGTIKLWDLEEAKI--VRTLTGHRSNCISVDFHPF-GEFFASGS----LDTNLKIW 128 (819)
Q Consensus 58 h~~~V~~l~fspd--g~~Lasgs~DG~I~IWDl~s~~~--i~~l~~h~~~I~sl~fsp~-g~~Lasgs----~Dg~I~Iw 128 (819)
....+.|+++.-+ ...+++|..+|.|.+-.+....- .....++...+++++|++- .+.||+|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 3456788887553 45888999999999998865432 2345678889999999984 45566663 35689999
Q ss_pred ECCCC--eEEE--EEec-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeC-CCCEEEE
Q 003445 129 DIRKK--GCIH--TYKG-HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHP-HEFLLAT 202 (819)
Q Consensus 129 Di~t~--~~i~--~~~~-h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fsp-dg~~Las 202 (819)
|+.++ .+.. .+.+ ......+++|..+.+.+++|.....+.++|++...... .......+..+...| .+.++++
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~-~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV-SSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh-hhhhhhhcccceecCCCCCceec
Confidence 99876 2221 1222 33456689999899999999999999999998432211 111234566777888 6778877
Q ss_pred EECCCeEEEEE-CCCCeE-EEEeCCC----CCCeeEEEEeCCCC-EEEEEECCC--EEEEEe
Q 003445 203 GSADRTVKFWD-LETFEL-IGSAGPE----TSGVRCLTFNPDGR-TLLCGLHES--LKVFSW 255 (819)
Q Consensus 203 gs~Dg~I~iwD-l~~~~~-l~~~~~~----~~~I~sl~fspdg~-~Lasgs~d~--I~Vwd~ 255 (819)
.. ||.|.+|| ..+.+. +..+... ...+..++|+|... .+++...++ |+.|+.
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence 76 99999999 444332 2222211 22488999999643 344555554 555554
No 364
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.40 E-value=0.066 Score=61.13 Aligned_cols=230 Identities=13% Similarity=0.142 Sum_probs=122.2
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEe-------cCCCCCeEEEEEcCCCCEEEEEECCC
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSL-------SGHTSGIDSVSFDSSEVLVAAGAASG 81 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l-------~~h~~~V~~l~fspdg~~Lasgs~DG 81 (819)
+..+.-..+.|.++.|.. +. .|++-..||.+++||+. |+....+ .-....+.+..+..+|-.+++ .++
T Consensus 73 l~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~ 147 (410)
T PF04841_consen 73 LSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNN 147 (410)
T ss_pred eEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCCEEEEC--CCC
Confidence 333333347888888875 33 46667789999999985 3331111 111222333344445644443 345
Q ss_pred eEEEEECCCCe-EEEEEc---C-----CCC-CeEE-EEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEE
Q 003445 82 TIKLWDLEEAK-IVRTLT---G-----HRS-NCIS-VDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIR 150 (819)
Q Consensus 82 ~I~IWDl~s~~-~i~~l~---~-----h~~-~I~s-l~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~ 150 (819)
.+.+..-.... ..+.+. . +.. .+.. ..+..+....+....++.+.+.+-..... +. ..+++..|+
T Consensus 148 ~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~ia 223 (410)
T PF04841_consen 148 RFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIA 223 (410)
T ss_pred eEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEE
Confidence 55444322211 111111 0 000 0000 22333444444444555555444322111 22 246799999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEecC-CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCC
Q 003445 151 FTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH-EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSG 229 (819)
Q Consensus 151 fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h-~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~ 229 (819)
+||+|++++.-..+|.+.+....-.+.+.++... ......+.|.-+ |..+..|. ..+....+...
T Consensus 224 vSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~---------dav~l~~~----~~l~lvg~~~~- 289 (410)
T PF04841_consen 224 VSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN---------DAVVLSWE----DELLLVGPDGD- 289 (410)
T ss_pred ECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC---------CcEEEEeC----CEEEEECCCCC-
Confidence 9999999999999999999987777777777654 345567777644 33333441 11222222222
Q ss_pred eeEEEEeCCCCEEEEEECCCEEEEEecCCceeee
Q 003445 230 VRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDA 263 (819)
Q Consensus 230 I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~ 263 (819)
.+.|.-++..++..-.|+++|+.-+..+.++.
T Consensus 290 --~~~~~~~~~~~l~~E~DG~riit~~~~~~l~~ 321 (410)
T PF04841_consen 290 --SISFWYDGPVILVSEIDGVRIITSTSHEFLQR 321 (410)
T ss_pred --ceEEeccCceEEeccCCceEEEeCCceEEEEE
Confidence 23454455566677778888886655444443
No 365
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.31 E-value=0.0043 Score=74.88 Aligned_cols=135 Identities=16% Similarity=0.150 Sum_probs=97.8
Q ss_pred ECCCcEEEEECCCCeEEEEEecCCCC-eEEEEEcC-----CCCEEEEEECCCeEEEEECCCCe-EEEEEec----CCCCe
Q 003445 120 SLDTNLKIWDIRKKGCIHTYKGHTRG-VNAIRFTP-----DGRWVVSGGEDNTVKLWDLTAGK-LLHDFKC----HEGQI 188 (819)
Q Consensus 120 s~Dg~I~IwDi~t~~~i~~~~~h~~~-I~sl~fsp-----dg~~L~sgs~Dg~I~IwDl~t~~-~i~~~~~----h~~~I 188 (819)
.....|+-.|+..|+.+..++.|... |..++-.. .....+.|-.+..|..||.|-.. .+..-.. .....
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 34578999999999999999987754 54443221 23456778889999999998632 2221111 23446
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEe
Q 003445 189 QCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSW 255 (819)
Q Consensus 189 ~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~ 255 (819)
.|++-+.+| +||+|+.+|.|++||--..+....+.+.+.+|.+|..+.||++|++.+...|.+++.
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 777766565 899999999999999543232333556689999999999999999998888877775
No 366
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.30 E-value=0.052 Score=59.76 Aligned_cols=170 Identities=12% Similarity=0.176 Sum_probs=107.5
Q ss_pred eEEEEECCCCceEEEecCC-CCCeEEEE---EcCC----CCEEEEEEC----------CCeEEEEECCCC-----eE--E
Q 003445 40 KVNLWAIGKPNAILSLSGH-TSGIDSVS---FDSS----EVLVAAGAA----------SGTIKLWDLEEA-----KI--V 94 (819)
Q Consensus 40 ~V~IWdl~~~~~i~~l~~h-~~~V~~l~---fspd----g~~Lasgs~----------DG~I~IWDl~s~-----~~--i 94 (819)
.|++.|..+.+.+..+.-. ...+.+++ |..+ ..+|++|+. .|.|.++++... +. +
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5788887777766655422 22344443 3332 467777754 289999999884 22 2
Q ss_pred EEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe-EEEEEec-CCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003445 95 RTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG-CIHTYKG-HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDL 172 (819)
Q Consensus 95 ~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~-~i~~~~~-h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl 172 (819)
... ...++|++++-. +.+|+++. ++.|++|++...+ ....... ....+.++... +++++.|.....+.++..
T Consensus 83 ~~~-~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 83 HST-EVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEE-EESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEE-eecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 222 356789888877 44455554 5889999998877 4433321 22356666655 669999998888777644
Q ss_pred CC-CeEEEEEe--cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECC
Q 003445 173 TA-GKLLHDFK--CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE 215 (819)
Q Consensus 173 ~t-~~~i~~~~--~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~ 215 (819)
+. +..+..+. .....++++.|-+++..++.+..+|.+.++...
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 32 33233332 234458888898777799999999999999875
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.14 Score=55.96 Aligned_cols=215 Identities=14% Similarity=0.099 Sum_probs=130.5
Q ss_pred EEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEec--
Q 003445 65 VSFDSSEV-LVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG-- 141 (819)
Q Consensus 65 l~fspdg~-~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~-- 141 (819)
-.|.++.. ++.+--..+.|+-||..+++.. .+. +.+.+.++..-..+..|+++. ..+.+++.+++..+..+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence 45667666 4555556788999998866442 232 223344444444444555543 3367778766655333221
Q ss_pred ---CCCCeEEEEEcCCCCEEEEEEC-----------CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC-C
Q 003445 142 ---HTRGVNAIRFTPDGRWVVSGGE-----------DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA-D 206 (819)
Q Consensus 142 ---h~~~I~sl~fspdg~~L~sgs~-----------Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~-D 206 (819)
.....+.+...|+|.+.+.... -|.|+.+|. .+..+..+..+-..-+.|+|+||++.|+.... .
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 1234567888999986665433 144555554 46666666555555689999999987777755 4
Q ss_pred CeEEEEECCC--C----e-EEEEeCCCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecCCceeeeeeccccceeEeEe-
Q 003445 207 RTVKFWDLET--F----E-LIGSAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDVGWSRLSDLNV- 276 (819)
Q Consensus 207 g~I~iwDl~~--~----~-~l~~~~~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~~~~~~~~~s~i~~l~~- 276 (819)
+.|+-|++.. + . ....+....+..-.++...+|.+.+++..+ .+.+|+-+ ++....+...........+
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence 7888888762 1 1 122233345566778888999988655444 68888888 7777777766444445444
Q ss_pred -cCCCEEEEE
Q 003445 277 -HEGKLLGCS 285 (819)
Q Consensus 277 -~dg~lLa~~ 285 (819)
.+.+.|.+.
T Consensus 264 G~~~~~L~iT 273 (307)
T COG3386 264 GPDLNTLYIT 273 (307)
T ss_pred CCCcCEEEEE
Confidence 334444433
No 368
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.20 E-value=0.26 Score=52.21 Aligned_cols=192 Identities=11% Similarity=0.128 Sum_probs=124.9
Q ss_pred eEEEecCCC--CCeEEEEEcCCCCEEEEEECCC--eEEEEECCCCeEEEEEcCCC-CCeEEEEEecCCCEEEEEECCCcE
Q 003445 51 AILSLSGHT--SGIDSVSFDSSEVLVAAGAASG--TIKLWDLEEAKIVRTLTGHR-SNCISVDFHPFGEFFASGSLDTNL 125 (819)
Q Consensus 51 ~i~~l~~h~--~~V~~l~fspdg~~Lasgs~DG--~I~IWDl~s~~~i~~l~~h~-~~I~sl~fsp~g~~Lasgs~Dg~I 125 (819)
.+..+. |. .....+.|..++.++-+.+.-| .|+.+|+.+++......-.. ----.++.. +++.+...-.++..
T Consensus 35 vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 35 VVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEE
T ss_pred EEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeE
Confidence 344444 43 3456788877888888888777 79999999998876554222 222344444 23344445568999
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecC-----CCCeEEEEEeCCCCEE
Q 003445 126 KIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH-----EGQIQCIDFHPHEFLL 200 (819)
Q Consensus 126 ~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h-----~~~I~sl~fspdg~~L 200 (819)
.+||..+.+.+.++.- .+.=+.++ .||+.|+.......|+++|..+.+....+... -..++-+.|. +|.+.
T Consensus 113 f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~Iy 188 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIY 188 (264)
T ss_dssp EEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred EEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence 9999999999888763 34556776 45777888777889999999887776665532 1246677776 67666
Q ss_pred EEEECCCeEEEEECCCCeEEEEeCC---------------CCCCeeEEEEeCCCCEEEEEECC
Q 003445 201 ATGSADRTVKFWDLETFELIGSAGP---------------ETSGVRCLTFNPDGRTLLCGLHE 248 (819)
Q Consensus 201 asgs~Dg~I~iwDl~~~~~l~~~~~---------------~~~~I~sl~fspdg~~Lasgs~d 248 (819)
|-.-....|...|..+|+.+..+.. ...-.+.|+|+|....|++.+..
T Consensus 189 ANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 189 ANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 6666777899999999998876421 13457899999987777766544
No 369
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0022 Score=73.34 Aligned_cols=94 Identities=21% Similarity=0.284 Sum_probs=80.8
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeE-EEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003445 101 RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVN-AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLH 179 (819)
Q Consensus 101 ~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~-sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~ 179 (819)
...+.-+.|+|.-..+|.+..+|.|.++.+. .+.++++.-|...++ +++|.|||+.|+.|..||+|++.|..++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3467789999999999999999999999987 788888887777777 99999999999999999999999999998887
Q ss_pred EEe-cCCCCeEEEEEeC
Q 003445 180 DFK-CHEGQIQCIDFHP 195 (819)
Q Consensus 180 ~~~-~h~~~I~sl~fsp 195 (819)
.+. .-...|.++.|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 742 2356788888864
No 370
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.05 E-value=0.1 Score=57.37 Aligned_cols=178 Identities=12% Similarity=0.208 Sum_probs=107.6
Q ss_pred CcEEEEEeC----------CCeEEEEECCCC----ceEEEe--cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003445 29 SRVLVTGGE----------DHKVNLWAIGKP----NAILSL--SGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK 92 (819)
Q Consensus 29 ~~~Latgs~----------Dg~V~IWdl~~~----~~i~~l--~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~ 92 (819)
..+|++|.. .|.|.++++.+. ..+..+ ....++|++++-- ++. |+++ ..+.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcc
Confidence 567887742 289999999873 222222 2357889999876 443 4443 36899999998877
Q ss_pred -EEEEEc-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-CeEEEEEe--cCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003445 93 -IVRTLT-GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK-KGCIHTYK--GHTRGVNAIRFTPDGRWVVSGGEDNTV 167 (819)
Q Consensus 93 -~i~~l~-~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t-~~~i~~~~--~h~~~I~sl~fspdg~~L~sgs~Dg~I 167 (819)
....-. .....+.++... ++++++|.....+.++..+. ...+..+. .....++++.|-++++.++.+..+|.|
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl 196 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL 196 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence 443322 123356666655 67999999888888875443 22232222 234568888998777799999999999
Q ss_pred EEEECCC-------C--eEEEEEecC-CCCeEEE---EEeC--CC------CEEEEEECCCeEEE
Q 003445 168 KLWDLTA-------G--KLLHDFKCH-EGQIQCI---DFHP--HE------FLLATGSADRTVKF 211 (819)
Q Consensus 168 ~IwDl~t-------~--~~i~~~~~h-~~~I~sl---~fsp--dg------~~Lasgs~Dg~I~i 211 (819)
.++.... + +.......| ...|+++ .+.| .+ ..++.++.+|.|..
T Consensus 197 ~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 197 FVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 9987752 2 222222222 3456776 4444 22 24777778888773
No 371
>PHA02713 hypothetical protein; Provisional
Probab=97.04 E-value=0.043 Score=65.24 Aligned_cols=220 Identities=9% Similarity=0.026 Sum_probs=112.6
Q ss_pred eEEEEECCCCeEEE--EEcCCCCCeEEEEEecCCCEEEEEECC------CcEEEEECCCCeEEEEE--ecCCCCeEEEEE
Q 003445 82 TIKLWDLEEAKIVR--TLTGHRSNCISVDFHPFGEFFASGSLD------TNLKIWDIRKKGCIHTY--KGHTRGVNAIRF 151 (819)
Q Consensus 82 ~I~IWDl~s~~~i~--~l~~h~~~I~sl~fsp~g~~Lasgs~D------g~I~IwDi~t~~~i~~~--~~h~~~I~sl~f 151 (819)
.+..||..+++... .+...... .+++. -++..++.|+.+ ..+..||..+......- ....... +++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE
Confidence 56788887765432 12111111 22222 256677777753 34778898776532211 1111111 2222
Q ss_pred cCCCCEEEEEECCC-----eEEEEECCCCeEEEE--EecCCCCeEEEEEeCCCCEEEEEECCC-----------------
Q 003445 152 TPDGRWVVSGGEDN-----TVKLWDLTAGKLLHD--FKCHEGQIQCIDFHPHEFLLATGSADR----------------- 207 (819)
Q Consensus 152 spdg~~L~sgs~Dg-----~I~IwDl~t~~~i~~--~~~h~~~I~sl~fspdg~~Lasgs~Dg----------------- 207 (819)
-+|+..+.||.++ .+..||..+.+.... +.........+ .-+|.+.+.|+.++
T Consensus 350 -~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 350 -IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred -ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccc
Confidence 2577778888764 478899887643321 11111111112 23677888887653
Q ss_pred ------eEEEEECCCCeEE--EEeCCCCCCeeEEEEeCCCCEEEEEECC-------CEEEEEecC-Cceeeeeeccccc-
Q 003445 208 ------TVKFWDLETFELI--GSAGPETSGVRCLTFNPDGRTLLCGLHE-------SLKVFSWEP-IRCHDAVDVGWSR- 270 (819)
Q Consensus 208 ------~I~iwDl~~~~~l--~~~~~~~~~I~sl~fspdg~~Lasgs~d-------~I~Vwd~~~-~~~~~~~~~~~s~- 270 (819)
.+..||..+.+-. ..+....... +++ .-+|++.+.|+.+ .+..||.++ .+-...-......
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 4777888765432 2221111111 222 2356666666432 244566555 3333222222222
Q ss_pred eeEeEecCCCEEEEEEcCC--eEEEEEecCCceeeeeeccc
Q 003445 271 LSDLNVHEGKLLGCSYNQS--CVGVWVVDISRIEPYTIGSV 309 (819)
Q Consensus 271 i~~l~~~dg~lLa~~~~Dg--~V~IW~ld~~~~~p~~~~~~ 309 (819)
...+...+|++.++|+.++ .+..||+.+.+-..+...+.
T Consensus 505 ~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 505 ALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred cceeEEECCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 2334457899999999888 67777777766665444443
No 372
>PHA02713 hypothetical protein; Provisional
Probab=97.01 E-value=0.042 Score=65.31 Aligned_cols=203 Identities=12% Similarity=0.095 Sum_probs=101.9
Q ss_pred eEEEEECCCCceEEEecCCCCC-eEEEEEcCCCCEEEEEECC------CeEEEEECCCCeEEEE--EcCCCCCeEEEEEe
Q 003445 40 KVNLWAIGKPNAILSLSGHTSG-IDSVSFDSSEVLVAAGAAS------GTIKLWDLEEAKIVRT--LTGHRSNCISVDFH 110 (819)
Q Consensus 40 ~V~IWdl~~~~~i~~l~~h~~~-V~~l~fspdg~~Lasgs~D------G~I~IWDl~s~~~i~~--l~~h~~~I~sl~fs 110 (819)
.+..||..+.+....-.-.... -.+++. -++.+++.||.+ ..+..||..+...... +....... +++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~- 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV- 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE-
Confidence 4677887766543321111111 112222 256677777753 3577889877654221 11111122 2222
Q ss_pred cCCCEEEEEECCC-----cEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEECCC------------------
Q 003445 111 PFGEFFASGSLDT-----NLKIWDIRKKGCIHT--YKGHTRGVNAIRFTPDGRWVVSGGEDN------------------ 165 (819)
Q Consensus 111 p~g~~Lasgs~Dg-----~I~IwDi~t~~~i~~--~~~h~~~I~sl~fspdg~~L~sgs~Dg------------------ 165 (819)
-+|...+.|+.++ .+..||..+.+.... +.........+.+ +|...+.|+.++
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccccc
Confidence 2577778887754 478899887653321 1111111112222 577777777653
Q ss_pred -----eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC------CeEEEEECCC---CeEEEEeCCCCCCee
Q 003445 166 -----TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD------RTVKFWDLET---FELIGSAGPETSGVR 231 (819)
Q Consensus 166 -----~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~D------g~I~iwDl~~---~~~l~~~~~~~~~I~ 231 (819)
.+..||..+.+-...-.-...........-++.+.+.|+.+ ..+..||..+ +..+..+........
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 47778877665332111111111111223356777777754 2467899886 333443433323223
Q ss_pred EEEEeCCCCEEEEEECCC
Q 003445 232 CLTFNPDGRTLLCGLHES 249 (819)
Q Consensus 232 sl~fspdg~~Lasgs~d~ 249 (819)
.+.+ +|++.++|+.++
T Consensus 508 ~~~~--~~~iyv~Gg~~~ 523 (557)
T PHA02713 508 TILH--DNTIMMLHCYES 523 (557)
T ss_pred eEEE--CCEEEEEeeecc
Confidence 3333 677778877665
No 373
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0034 Score=71.92 Aligned_cols=94 Identities=17% Similarity=0.290 Sum_probs=79.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeE-EEEEecCCCEEEEEECCCcEEEEECCCCeEEE
Q 003445 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI-SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH 137 (819)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~-sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~ 137 (819)
...|.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.||+|-.||+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4568889999999999999999999999988 777788886777777 99999999999999999999999999998777
Q ss_pred EEe-cCCCCeEEEEEcC
Q 003445 138 TYK-GHTRGVNAIRFTP 153 (819)
Q Consensus 138 ~~~-~h~~~I~sl~fsp 153 (819)
... .-...|.++-|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 631 2345677887863
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.93 E-value=0.057 Score=64.32 Aligned_cols=202 Identities=14% Similarity=0.094 Sum_probs=110.2
Q ss_pred CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE------CCC--eEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 003445 38 DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA------ASG--TIKLWDLEEAKIVRTLTGHRSNCISVDF 109 (819)
Q Consensus 38 Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs------~DG--~I~IWDl~s~~~i~~l~~h~~~I~sl~f 109 (819)
+|.+.-.+-.....+....+....+...+++|+|+.++... .|+ .|.+++.. +.......+. ....-.|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceE
Confidence 56665443222222222223334678899999999877665 233 55555653 2232223332 3778899
Q ss_pred ecCCCEEEEEECC------------CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE---EECCC
Q 003445 110 HPFGEFFASGSLD------------TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL---WDLTA 174 (819)
Q Consensus 110 sp~g~~Lasgs~D------------g~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~I---wDl~t 174 (819)
+|+|..+++.... +.+++.+++.+.... .....|..+.|+|||..++... +|.|++ -....
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~ 480 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED 480 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence 9998877776532 233333444333222 2345799999999999988766 577777 44444
Q ss_pred CeE-E---EEEe-cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC-CeEEEEeCC--CCCCeeEEEEeCCCCEEEEEE
Q 003445 175 GKL-L---HDFK-CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET-FELIGSAGP--ETSGVRCLTFNPDGRTLLCGL 246 (819)
Q Consensus 175 ~~~-i---~~~~-~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~-~~~l~~~~~--~~~~I~sl~fspdg~~Lasgs 246 (819)
|.. + ..+. .-...+..+.|..++.++ ++..++...+|.+.- |.....+.. ...++..++-+++ .|++..
T Consensus 481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~ 557 (591)
T PRK13616 481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTD 557 (591)
T ss_pred CceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEc
Confidence 541 1 1122 223346889999998855 555544444454322 222111122 2455666666652 344444
Q ss_pred CCC
Q 003445 247 HES 249 (819)
Q Consensus 247 ~d~ 249 (819)
.++
T Consensus 558 ~~g 560 (591)
T PRK13616 558 ARA 560 (591)
T ss_pred CCc
Confidence 444
No 375
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.93 E-value=0.22 Score=61.04 Aligned_cols=193 Identities=12% Similarity=0.090 Sum_probs=123.0
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCCC--------eEEEEEcC----------------CCCEEEEEECCCeEEEE
Q 003445 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTSG--------IDSVSFDS----------------SEVLVAAGAASGTIKLW 86 (819)
Q Consensus 31 ~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~--------V~~l~fsp----------------dg~~Lasgs~DG~I~IW 86 (819)
.|+.++.++.|.-.|..+++.+..+...... ...+.+.. .+..|+.++.|+.|.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 5777788899999999999999887642211 12233321 33478888899999999
Q ss_pred ECCCCeEEEEEcCCCCCeE-------------EEEEec--CCCEEEEEEC----------CCcEEEEECCCCeEEEEEec
Q 003445 87 DLEEAKIVRTLTGHRSNCI-------------SVDFHP--FGEFFASGSL----------DTNLKIWDIRKKGCIHTYKG 141 (819)
Q Consensus 87 Dl~s~~~i~~l~~h~~~I~-------------sl~fsp--~g~~Lasgs~----------Dg~I~IwDi~t~~~i~~~~~ 141 (819)
|.++|+.+..+.. .+.+. .+.-.| .+..+++|+. +|.|+-+|.++|+.+..+..
T Consensus 276 DA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 276 DADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP 354 (764)
T ss_pred ECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence 9999999877642 22110 011111 2446666643 68899999999999887752
Q ss_pred C---------CC--------Ce-EEEEEcCCCCEEEEEE------------------CCCeEEEEECCCCeEEEEEecCC
Q 003445 142 H---------TR--------GV-NAIRFTPDGRWVVSGG------------------EDNTVKLWDLTAGKLLHDFKCHE 185 (819)
Q Consensus 142 h---------~~--------~I-~sl~fspdg~~L~sgs------------------~Dg~I~IwDl~t~~~i~~~~~h~ 185 (819)
- .+ .+ ..+++.+....++.+. ..+.|.-.|.++|+....++...
T Consensus 355 g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~ 434 (764)
T TIGR03074 355 GNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVH 434 (764)
T ss_pred CCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccC
Confidence 1 00 01 2334455444444321 23567778899999888776411
Q ss_pred CCe---------EEEEEeC-CCC---EEEEEECCCeEEEEECCCCeEEEEeC
Q 003445 186 GQI---------QCIDFHP-HEF---LLATGSADRTVKFWDLETFELIGSAG 224 (819)
Q Consensus 186 ~~I---------~sl~fsp-dg~---~Lasgs~Dg~I~iwDl~~~~~l~~~~ 224 (819)
..+ .-+.+.. +|+ .++.++.+|.++++|-++|+.+....
T Consensus 435 hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 435 HDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 111 1122322 553 88899999999999999999887643
No 376
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.92 E-value=0.05 Score=64.70 Aligned_cols=230 Identities=17% Similarity=0.177 Sum_probs=125.2
Q ss_pred cCCCCEEEEEECC------CeEEEEECCCCeEEEEEcC-CCCCeEEEEEecCCCEEEEEECC------CcEEEEECCCCe
Q 003445 68 DSSEVLVAAGAAS------GTIKLWDLEEAKIVRTLTG-HRSNCISVDFHPFGEFFASGSLD------TNLKIWDIRKKG 134 (819)
Q Consensus 68 spdg~~Lasgs~D------G~I~IWDl~s~~~i~~l~~-h~~~I~sl~fsp~g~~Lasgs~D------g~I~IwDi~t~~ 134 (819)
+..+.+++.||.+ ..+..||..+++......- ....-.+++.. ++..+++|+.| .++..||.++.+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3345677777777 3677888887754332221 22223344444 46788888888 357788888776
Q ss_pred EEEE--EecCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC
Q 003445 135 CIHT--YKGHTRGVNAIRFTPDGRWVVSGGEDN-----TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR 207 (819)
Q Consensus 135 ~i~~--~~~h~~~I~sl~fspdg~~L~sgs~Dg-----~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg 207 (819)
.... +...........+ +|...++|+.|| .+-.||..+.+.-..-.-....-..-...-+|.+.++|+.++
T Consensus 361 W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred eeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC
Confidence 4432 1111111111222 578888999886 477788876543222111111111122233688888888654
Q ss_pred ------eEEEEECCCCeEE--EEeCCCCCCeeEEEEeCCCCEEEEEECCC------EEEEEecCCceeeeeeccccce-e
Q 003445 208 ------TVKFWDLETFELI--GSAGPETSGVRCLTFNPDGRTLLCGLHES------LKVFSWEPIRCHDAVDVGWSRL-S 272 (819)
Q Consensus 208 ------~I~iwDl~~~~~l--~~~~~~~~~I~sl~fspdg~~Lasgs~d~------I~Vwd~~~~~~~~~~~~~~s~i-~ 272 (819)
++..||..+.+.. ..+........ ++. -++.+.++|+.++ +..||..+.+-..+-....... .
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV 516 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc
Confidence 5778888765433 22322222222 332 2566777776543 5667766655433322222211 2
Q ss_pred EeEecCCCEEEEEEcCC-----eEEEEEecCCcee
Q 003445 273 DLNVHEGKLLGCSYNQS-----CVGVWVVDISRIE 302 (819)
Q Consensus 273 ~l~~~dg~lLa~~~~Dg-----~V~IW~ld~~~~~ 302 (819)
.+...++++.++|+.|+ +|..||.++.+-.
T Consensus 517 g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 517 GVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred cEEEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 23446788888888774 5666665555444
No 377
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.012 Score=66.36 Aligned_cols=138 Identities=17% Similarity=0.225 Sum_probs=100.0
Q ss_pred EEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-------EEEEEECCCeEEEEECCCCe--EEEEEecCC-
Q 003445 116 FASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR-------WVVSGGEDNTVKLWDLTAGK--LLHDFKCHE- 185 (819)
Q Consensus 116 Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~-------~L~sgs~Dg~I~IwDl~t~~--~i~~~~~h~- 185 (819)
|..+.....|+-.|++.|+.+..++-|.. |.-+.+.|+++ .-+.|-.+..|.-||.+-.. .+....+|.
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 44555667799999999999999987766 88888888653 23457788999999998432 222222222
Q ss_pred ---CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEe
Q 003445 186 ---GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSW 255 (819)
Q Consensus 186 ---~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~ 255 (819)
....|.+-..+| ++++|+.+|.|++||--...--..+.+...+|..+..+.+|++|++.+...+.+.+.
T Consensus 428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred ccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 224455444444 899999999999999743333445677789999999999999999988887666654
No 378
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.91 E-value=0.18 Score=53.65 Aligned_cols=193 Identities=14% Similarity=0.213 Sum_probs=129.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCC-CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe
Q 003445 56 SGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGH-RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG 134 (819)
Q Consensus 56 ~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h-~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~ 134 (819)
.+....+.++.|+|+.+.|++......-.+|=-..|+.++++.-. -..-..+.|..+|.+.++--.++.++++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 455566999999999999988888888888877889998887521 2334567888888888887788999988776553
Q ss_pred EEEEE----------ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE---EEEEecC-------CCCeEEEEEe
Q 003445 135 CIHTY----------KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL---LHDFKCH-------EGQIQCIDFH 194 (819)
Q Consensus 135 ~i~~~----------~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~---i~~~~~h-------~~~I~sl~fs 194 (819)
.+... ...+.....++|.|.++.|+.+-+..-+.||....+.. .+....+ -..|.++.|+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 22211 11256788999999988888888877777766553321 1111111 1346778888
Q ss_pred CC-CCEEEEEECCCeEEEEECCCCeEEEEeC---CC------CCCeeEEEEeCCCCEEEEEECCC
Q 003445 195 PH-EFLLATGSADRTVKFWDLETFELIGSAG---PE------TSGVRCLTFNPDGRTLLCGLHES 249 (819)
Q Consensus 195 pd-g~~Lasgs~Dg~I~iwDl~~~~~l~~~~---~~------~~~I~sl~fspdg~~Lasgs~d~ 249 (819)
+. +.+|+.+.+++.+.-.|... ..+..+. +. -...-.++..++|.+.+++-.+.
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G-~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPnl 305 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSG-EVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPNL 305 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCC-CeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCCc
Confidence 74 67777788888888888764 3333321 11 11235678888887777765554
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.90 E-value=0.088 Score=62.74 Aligned_cols=170 Identities=14% Similarity=0.081 Sum_probs=99.3
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEE------CCC--cEEEEECCCCeEEEEEecCCCCeEEEEE
Q 003445 80 SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS------LDT--NLKIWDIRKKGCIHTYKGHTRGVNAIRF 151 (819)
Q Consensus 80 DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs------~Dg--~I~IwDi~t~~~i~~~~~h~~~I~sl~f 151 (819)
+|.+.-.+-.....+.-..+....+.+.+++|+|+.++..- .|. .|++++.. +.......+ ...+.-.|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceE
Confidence 67665544333223322223334678899999999877765 233 56666653 322222232 23788999
Q ss_pred cCCCCEEEEEECC------------CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEE---EECCC
Q 003445 152 TPDGRWVVSGGED------------NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKF---WDLET 216 (819)
Q Consensus 152 spdg~~L~sgs~D------------g~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~i---wDl~~ 216 (819)
+|||.+|++.... +.+.+.++..+.... ...+.|..+.|+|||..++... +|.|++ -....
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~ 480 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED 480 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence 9999988877533 233333444333222 2246799999999999888876 577777 44445
Q ss_pred CeE-E---EEeCC-CCCCeeEEEEeCCCCEEEEEECCCEEEEEec
Q 003445 217 FEL-I---GSAGP-ETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (819)
Q Consensus 217 ~~~-l---~~~~~-~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (819)
|.. + ..+.. ....+.++.|..++.+++......-.+|.+.
T Consensus 481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVN 525 (591)
T ss_pred CceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEe
Confidence 541 1 11222 2333688999999986644333334455543
No 380
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.82 E-value=0.19 Score=53.05 Aligned_cols=201 Identities=15% Similarity=0.151 Sum_probs=127.4
Q ss_pred CeEEEEEecCCC-EEEEEECCCc-EEEEECCCCeEEEEEecCCC--CeEEEEEcCCCCEEEEEECC-----CeEEEEECC
Q 003445 103 NCISVDFHPFGE-FFASGSLDTN-LKIWDIRKKGCIHTYKGHTR--GVNAIRFTPDGRWVVSGGED-----NTVKLWDLT 173 (819)
Q Consensus 103 ~I~sl~fsp~g~-~Lasgs~Dg~-I~IwDi~t~~~i~~~~~h~~--~I~sl~fspdg~~L~sgs~D-----g~I~IwDl~ 173 (819)
....++|+|... -++.+-.-|+ ..++|....+...++...++ ..-.=.|+|||.+|++.-.| |.|-|||.+
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 344678888654 3555555444 56889888776666543222 12234799999999876543 789999998
Q ss_pred CC-eEEEEEecCCCCeEEEEEeCCCCEEEEEEC------------------CCeEEEEECCCCeEEEEeC----CCCCCe
Q 003445 174 AG-KLLHDFKCHEGQIQCIDFHPHEFLLATGSA------------------DRTVKFWDLETFELIGSAG----PETSGV 230 (819)
Q Consensus 174 t~-~~i~~~~~h~~~I~sl~fspdg~~Lasgs~------------------Dg~I~iwDl~~~~~l~~~~----~~~~~I 230 (819)
.+ ..+-++..|.-.-..+.|.+||+.|+.+.. .-.+.+.|..+|+++.... .+.-.|
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi 228 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI 228 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence 54 346667777777788999999999988742 0124455656666654432 234568
Q ss_pred eEEEEeCCCCEEEEEECCC------EEEEEecCCceeeeeeccc-------cceeEeEec--CCCEEEEEEcCCeEEEEE
Q 003445 231 RCLTFNPDGRTLLCGLHES------LKVFSWEPIRCHDAVDVGW-------SRLSDLNVH--EGKLLGCSYNQSCVGVWV 295 (819)
Q Consensus 231 ~sl~fspdg~~Lasgs~d~------I~Vwd~~~~~~~~~~~~~~-------s~i~~l~~~--dg~lLa~~~~Dg~V~IW~ 295 (819)
+.++..+||..++.+...+ .-|=....++.+..++... ..+..+..+ ++-+.+++-..++.-|||
T Consensus 229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d 308 (366)
T COG3490 229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD 308 (366)
T ss_pred eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence 9999999998887654321 1222223334443333221 223344444 455556666778899999
Q ss_pred ecCCceee
Q 003445 296 VDISRIEP 303 (819)
Q Consensus 296 ld~~~~~p 303 (819)
.+++.+..
T Consensus 309 a~tG~vv~ 316 (366)
T COG3490 309 AATGAVVS 316 (366)
T ss_pred cCCCcEEe
Confidence 99998874
No 381
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.78 E-value=0.073 Score=63.32 Aligned_cols=212 Identities=15% Similarity=0.194 Sum_probs=115.6
Q ss_pred CCcEEEEEeCC------CeEEEEECCCCceEEEecC-CCCCeEEEEEcCCCCEEEEEECC------CeEEEEECCCCeEE
Q 003445 28 SSRVLVTGGED------HKVNLWAIGKPNAILSLSG-HTSGIDSVSFDSSEVLVAAGAAS------GTIKLWDLEEAKIV 94 (819)
Q Consensus 28 ~~~~Latgs~D------g~V~IWdl~~~~~i~~l~~-h~~~V~~l~fspdg~~Lasgs~D------G~I~IWDl~s~~~i 94 (819)
.+.+++.||.+ ..+..||..++.......- +...-.++++. ++.+.++||.| .++..||...++..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 45677777776 3678888877755443321 22233344443 45677888888 36778888777643
Q ss_pred EE--EcCCCCCeEEEEEecCCCEEEEEECCCc-----EEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEECCC
Q 003445 95 RT--LTGHRSNCISVDFHPFGEFFASGSLDTN-----LKIWDIRKKGCIHT--YKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (819)
Q Consensus 95 ~~--l~~h~~~I~sl~fsp~g~~Lasgs~Dg~-----I~IwDi~t~~~i~~--~~~h~~~I~sl~fspdg~~L~sgs~Dg 165 (819)
.. +...........+ +|...++|+.||. |-.||..+.+.-.. +...........+ +|...++|+.++
T Consensus 363 ~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDG 438 (571)
T ss_pred ccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCC
Confidence 31 2222222222222 5788899998874 77788776543222 2111122222222 577888888654
Q ss_pred ------eEEEEECCCCeEEEE--EecCCCCeEEEEEeCCCCEEEEEECCC-----eEEEEECCCCeEEEE--eCCCCCCe
Q 003445 166 ------TVKLWDLTAGKLLHD--FKCHEGQIQCIDFHPHEFLLATGSADR-----TVKFWDLETFELIGS--AGPETSGV 230 (819)
Q Consensus 166 ------~I~IwDl~t~~~i~~--~~~h~~~I~sl~fspdg~~Lasgs~Dg-----~I~iwDl~~~~~l~~--~~~~~~~I 230 (819)
.+..||..+++.... +........ ++ .-++.+.+.|+.|+ +|..||..+.+.... +......+
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV 516 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc
Confidence 467888877654332 221111111 22 23678888888776 377888877554332 22232322
Q ss_pred eEEEEeCCCCEEEEEECC
Q 003445 231 RCLTFNPDGRTLLCGLHE 248 (819)
Q Consensus 231 ~sl~fspdg~~Lasgs~d 248 (819)
....+ +++..++|+.+
T Consensus 517 g~~~~--~~~ly~vGG~~ 532 (571)
T KOG4441|consen 517 GVVVL--GGKLYAVGGFD 532 (571)
T ss_pred cEEEE--CCEEEEEeccc
Confidence 22322 55566666544
No 382
>PRK10115 protease 2; Provisional
Probab=96.75 E-value=2.3 Score=51.94 Aligned_cols=235 Identities=6% Similarity=-0.018 Sum_probs=117.0
Q ss_pred CEEEEEEeeCCCcEEEEE-eCC----CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC------CeEEEE
Q 003445 18 TVNCLKIGRKSSRVLVTG-GED----HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS------GTIKLW 86 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latg-s~D----g~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D------G~I~IW 86 (819)
.+..+.|+|++ ++|+.+ +.+ ..|++.|+.++..+...-... -..++|.+|++.|+....+ ..|+.|
T Consensus 128 ~l~~~~~Spdg-~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDN-TIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCC-CEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 46678899954 455544 333 358888988776432221111 1469999998866554432 478888
Q ss_pred ECCCC--eEEEEEcCCCCCeE-EEEEecCCCEEEEEEC---CCcEEEEECC--CCeEEEEEecCCCCeEEEEEcCCCCEE
Q 003445 87 DLEEA--KIVRTLTGHRSNCI-SVDFHPFGEFFASGSL---DTNLKIWDIR--KKGCIHTYKGHTRGVNAIRFTPDGRWV 158 (819)
Q Consensus 87 Dl~s~--~~i~~l~~h~~~I~-sl~fsp~g~~Lasgs~---Dg~I~IwDi~--t~~~i~~~~~h~~~I~sl~fspdg~~L 158 (819)
++.++ +....+........ .+..+.++++++..+. ++.+.+|+.. .+.....+.........+. +.. ..|
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~l 282 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HRF 282 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CEE
Confidence 99887 33344443333333 2233447777665443 4578888853 3332222222222222222 222 333
Q ss_pred EEEECC----CeEEEEECCCCeEEEEEecC-C-CCeEEEEEeCCCCEEEEEECCCeEEE--EECCCCeEEEEeC-CCCCC
Q 003445 159 VSGGED----NTVKLWDLTAGKLLHDFKCH-E-GQIQCIDFHPHEFLLATGSADRTVKF--WDLETFELIGSAG-PETSG 229 (819)
Q Consensus 159 ~sgs~D----g~I~IwDl~t~~~i~~~~~h-~-~~I~sl~fspdg~~Lasgs~Dg~I~i--wDl~~~~~l~~~~-~~~~~ 229 (819)
+.-+.. ..|...++........+..+ . ..|..+.+. .+.++++...+|.-++ +|...+ .+..+. .....
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~ 360 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAY 360 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCce
Confidence 333322 24555555521112233334 2 367778887 3456666666776554 454433 333332 22222
Q ss_pred eeEEEEe--CCCCEEE-EEEC-C---CEEEEEecCCc
Q 003445 230 VRCLTFN--PDGRTLL-CGLH-E---SLKVFSWEPIR 259 (819)
Q Consensus 230 I~sl~fs--pdg~~La-sgs~-d---~I~Vwd~~~~~ 259 (819)
+..+.++ +++..++ ..+. . .+..||..+.+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 3333444 4444333 3222 1 35666665543
No 383
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.71 E-value=1.3 Score=48.42 Aligned_cols=281 Identities=13% Similarity=0.081 Sum_probs=130.7
Q ss_pred CcccceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec--CC---CCCeEEEEEcCCCCEEEEE
Q 003445 3 TKRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS--GH---TSGIDSVSFDSSEVLVAAG 77 (819)
Q Consensus 3 tkr~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~--~h---~~~V~~l~fspdg~~Lasg 77 (819)
....|+...+.. ...+..|.|.. ...-+++| ..+.|. -..+-++.-.... .. .-...+|.|..+ ..+++|
T Consensus 4 ~~~~W~~v~l~t-~~~l~dV~F~d-~~~G~~VG-~~g~il-~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG 78 (302)
T PF14870_consen 4 SGNSWQQVSLPT-DKPLLDVAFVD-PNHGWAVG-AYGTIL-KTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG 78 (302)
T ss_dssp SS--EEEEE-S--SS-EEEEEESS-SS-EEEEE-TTTEEE-EESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE
T ss_pred cCCCcEEeecCC-CCceEEEEEec-CCEEEEEe-cCCEEE-EECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc
Confidence 445666666553 45899999983 44445555 456432 2222232211111 11 123667777643 344444
Q ss_pred ECCCeEEEEECCCCeEEEEEc---CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe-EEEEEecCCCCeEEEEEcC
Q 003445 78 AASGTIKLWDLEEAKIVRTLT---GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG-CIHTYKGHTRGVNAIRFTP 153 (819)
Q Consensus 78 s~DG~I~IWDl~s~~~i~~l~---~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~-~i~~~~~h~~~I~sl~fsp 153 (819)
..|. .+.-.+.|+.-..+. .-......+....++ ....++..|.|+.=. +.++ -......-.+.+..+..++
T Consensus 79 -~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~ 154 (302)
T PF14870_consen 79 -EPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSS 154 (302)
T ss_dssp -ETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-T
T ss_pred -CCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECC
Confidence 4553 344444444333321 122333444444444 333344556554332 2232 2222334456788899999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEE-CCCCeEEEE----eCCCCC
Q 003445 154 DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWD-LETFELIGS----AGPETS 228 (819)
Q Consensus 154 dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwD-l~~~~~l~~----~~~~~~ 228 (819)
||++++++.....+.-||--...-...-......|..|.|.|++.+.+++ ..|.|++=+ ....+.... +.....
T Consensus 155 dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~ 233 (302)
T PF14870_consen 155 DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGY 233 (302)
T ss_dssp TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S
T ss_pred CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCce
Confidence 99988888666666678754322222222346789999999998776655 889998887 233332222 122344
Q ss_pred CeeEEEEeCCCCEEEEEECCCEEEEEecCCceeeeeecc---ccceeEeEecCCCEEEEEEcCCeEEEE
Q 003445 229 GVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVG---WSRLSDLNVHEGKLLGCSYNQSCVGVW 294 (819)
Q Consensus 229 ~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~---~s~i~~l~~~dg~lLa~~~~Dg~V~IW 294 (819)
.+..++|.+++...++|..+. -+...+.++..+..... ...+..+.+.+.+.-.+-+++|.|.=|
T Consensus 234 ~~ld~a~~~~~~~wa~gg~G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 234 GILDLAYRPPNEIWAVGGSGT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp -EEEEEESSSS-EEEEESTT--EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred eeEEEEecCCCCEEEEeCCcc-EEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 589999999988888776654 55666666655443321 233445555444444455577766544
No 384
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.64 E-value=0.0062 Score=42.04 Aligned_cols=39 Identities=44% Similarity=0.892 Sum_probs=34.6
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 133 KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (819)
Q Consensus 133 ~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwD 171 (819)
+.++..+..|...|.++.|.+++.++++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355677778899999999999999999999999999996
No 385
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.63 E-value=0.0054 Score=42.34 Aligned_cols=39 Identities=38% Similarity=0.687 Sum_probs=34.2
Q ss_pred CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 49 PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 49 ~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
++....+..|...|.++.|.+++.++++++.||.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778899999999999999999999999999996
No 386
>PRK13684 Ycf48-like protein; Provisional
Probab=96.62 E-value=1.6 Score=48.42 Aligned_cols=279 Identities=10% Similarity=0.050 Sum_probs=138.1
Q ss_pred cccceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec----CCCCCeEEEEEcCCCCEEEEEEC
Q 003445 4 KRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS----GHTSGIDSVSFDSSEVLVAAGAA 79 (819)
Q Consensus 4 kr~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~----~h~~~V~~l~fspdg~~Lasgs~ 79 (819)
...|+...+. -...+.+|.|.. ..+-+++|. +|.|..=. +.++.-.... .....+.++.|.++ ..+++ +.
T Consensus 34 ~~~W~~~~~~-~~~~l~~v~F~d-~~~g~avG~-~G~il~T~-DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~ 107 (334)
T PRK13684 34 SSPWQVIDLP-TEANLLDIAFTD-PNHGWLVGS-NRTLLETN-DGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQ 107 (334)
T ss_pred CCCcEEEecC-CCCceEEEEEeC-CCcEEEEEC-CCEEEEEc-CCCCCceECccCCcccccceeeeEEcCC-cEEEe-CC
Confidence 3456666543 356899999974 445555554 55443221 2222211111 12234778888654 34444 44
Q ss_pred CCeEEEEECCCCeEEEEEc---CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE-ecCCCCeEEEEEcCCC
Q 003445 80 SGTIKLWDLEEAKIVRTLT---GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-KGHTRGVNAIRFTPDG 155 (819)
Q Consensus 80 DG~I~IWDl~s~~~i~~l~---~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~-~~h~~~I~sl~fspdg 155 (819)
.|.|..- -+.|+.-..+. ........+.....+..+++ +..|.|..=+ +.++.-..+ ......+..+.+.+++
T Consensus 108 ~g~i~~S-~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~-g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g 184 (334)
T PRK13684 108 PSLLLHT-TDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMA-TNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDG 184 (334)
T ss_pred CceEEEE-CCCCCCCeEccCCcCCCCCceEEEEECCCcceee-eccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCC
Confidence 5544332 12233222221 11111222222222333333 3445443222 222221111 2224568899999988
Q ss_pred CEEEEEECCCeEEE-EECCCCeEEEEEe-cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC----CCCC
Q 003445 156 RWVVSGGEDNTVKL-WDLTAGKLLHDFK-CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP----ETSG 229 (819)
Q Consensus 156 ~~L~sgs~Dg~I~I-wDl~t~~~i~~~~-~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~----~~~~ 229 (819)
.+++++ ..|.+.. +| ..++.-.... .....++++.+.+++..+++| ..|.+.+=..+.+..-..... ....
T Consensus 185 ~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~ 261 (334)
T PRK13684 185 KYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYG 261 (334)
T ss_pred eEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccc
Confidence 766554 5665543 22 2223222222 234678999999999887776 467665433444443222211 2245
Q ss_pred eeEEEEeCCCCEEEEEECCCEEEEEecCCceeeeeec---cccceeEeEecCCCEEEEEEcCCeEEEEE
Q 003445 230 VRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDV---GWSRLSDLNVHEGKLLGCSYNQSCVGVWV 295 (819)
Q Consensus 230 I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~---~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ 295 (819)
+..+.|.+++..+++|..+ ..+...+.++....... ....+..+.+.++......+..|.|--|+
T Consensus 262 l~~v~~~~~~~~~~~G~~G-~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 262 YLDLAYRTPGEIWAGGGNG-TLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred eeeEEEcCCCCEEEEcCCC-eEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEec
Confidence 7889999988877777544 34455555554443321 11234455554444445566777776664
No 387
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.60 E-value=0.097 Score=47.97 Aligned_cols=101 Identities=16% Similarity=0.252 Sum_probs=69.1
Q ss_pred EEEEEEee---CCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003445 19 VNCLKIGR---KSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVR 95 (819)
Q Consensus 19 V~~lafsp---~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~ 95 (819)
|+++++.. ++...|++|++|..|++|+ ....+..+. ..+.|.+++-... ..++.+..+|+|-+|+-. ..+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 56666654 4557899999999999998 446666666 4567788877665 567888999999999853 2222
Q ss_pred EEcCCCCCeEEEEEec-C--C-CEEEEEECCCcEE
Q 003445 96 TLTGHRSNCISVDFHP-F--G-EFFASGSLDTNLK 126 (819)
Q Consensus 96 ~l~~h~~~I~sl~fsp-~--g-~~Lasgs~Dg~I~ 126 (819)
..+ .+..+.++++.. + | ..|++|-.+|.|-
T Consensus 76 RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 333 223356665543 2 2 2688998888763
No 388
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.56 E-value=1.6 Score=47.72 Aligned_cols=223 Identities=13% Similarity=0.160 Sum_probs=108.8
Q ss_pred EEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec---CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EE
Q 003445 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS---GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK-IV 94 (819)
Q Consensus 19 V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~---~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~-~i 94 (819)
.+++.|. +...+++| +.+ +.+...+.++.-..+. .-.+....+....++..++ ++..|.|..=. +.|+ -.
T Consensus 64 l~~I~f~--~~~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW~ 137 (302)
T PF14870_consen 64 LNSISFD--GNEGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRTT-DGGKTWQ 137 (302)
T ss_dssp EEEEEEE--TTEEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEES-STTSSEE
T ss_pred EEEEEec--CCceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCee
Confidence 5667775 34445544 455 3344444444433322 1223334444444443333 34556543322 3333 22
Q ss_pred EEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-
Q 003445 95 RTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT- 173 (819)
Q Consensus 95 ~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~- 173 (819)
.........+..+...++|.+++++.......-||--.......-..-...|..|.|.|++...+. ...|.|+.=+..
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPD 216 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TT
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCC
Confidence 333445577888999999999888866555567886432222222234578999999999876554 489999988722
Q ss_pred CCeEEEE----EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe---CCCCCCeeEEEEeCCCCEEEEEE
Q 003445 174 AGKLLHD----FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA---GPETSGVRCLTFNPDGRTLLCGL 246 (819)
Q Consensus 174 t~~~i~~----~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~---~~~~~~I~sl~fspdg~~Lasgs 246 (819)
..+.... .......+..++|.+++...++|+ .|.+ +...+.|+.-... ..-...++.+.|..+.+-++.|.
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-S
T ss_pred CccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECC
Confidence 2222211 111223478999999887777765 4533 4555655544333 23345689999988878888886
Q ss_pred CCCE
Q 003445 247 HESL 250 (819)
Q Consensus 247 ~d~I 250 (819)
++-+
T Consensus 295 ~G~l 298 (302)
T PF14870_consen 295 DGVL 298 (302)
T ss_dssp TTEE
T ss_pred CcEE
Confidence 5543
No 389
>PRK10115 protease 2; Provisional
Probab=96.54 E-value=3.2 Score=50.81 Aligned_cols=192 Identities=11% Similarity=0.031 Sum_probs=101.9
Q ss_pred CeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECC------CcEEEEE
Q 003445 61 GIDSVSFDSSEVLVAAGAAS-----GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD------TNLKIWD 129 (819)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~D-----G~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~D------g~I~IwD 129 (819)
.+..+.|+||+++|+.+... ..|++.|+.+++.+...-.... ..++|.++++.|+....+ ..|+.|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 46778899999988776432 3688999988864322211211 469999999876665442 3688888
Q ss_pred CCCC--eEEEEEecCCCCeE-EEEEcCCCCEEEEEEC---CCeEEEEECC--CCeEEEEEecCCCCeEEEEEeCCCCEEE
Q 003445 130 IRKK--GCIHTYKGHTRGVN-AIRFTPDGRWVVSGGE---DNTVKLWDLT--AGKLLHDFKCHEGQIQCIDFHPHEFLLA 201 (819)
Q Consensus 130 i~t~--~~i~~~~~h~~~I~-sl~fspdg~~L~sgs~---Dg~I~IwDl~--t~~~i~~~~~h~~~I~sl~fspdg~~La 201 (819)
+.++ +-...+........ .+..+.++++++..+. ++.+.+|+.. .+.....+....+....+. +..+.+++
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~ 284 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYL 284 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEE
Confidence 8877 33334443333333 3333448888775544 3568888853 3432222222222333332 33333333
Q ss_pred EEECC---CeEEEEECCC-CeEEEEeCCC-CCCeeEEEEeCCCCEEEEEECCC---EEEEEec
Q 003445 202 TGSAD---RTVKFWDLET-FELIGSAGPE-TSGVRCLTFNPDGRTLLCGLHES---LKVFSWE 256 (819)
Q Consensus 202 sgs~D---g~I~iwDl~~-~~~l~~~~~~-~~~I~sl~fspdg~~Lasgs~d~---I~Vwd~~ 256 (819)
....+ ..|...++.. ++....+... ...|..+.+..+ .++++...++ +.++++.
T Consensus 285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~ 346 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRK 346 (686)
T ss_pred EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCC
Confidence 33222 2344445542 2222222332 346788888733 3444444443 4455543
No 390
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.51 E-value=3.3 Score=50.67 Aligned_cols=281 Identities=14% Similarity=0.135 Sum_probs=154.1
Q ss_pred CCCEEEEEEeeC--CCc---EEEEEeCCCeEEEEEC-CCCceEEEe--c--CCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 16 SSTVNCLKIGRK--SSR---VLVTGGEDHKVNLWAI-GKPNAILSL--S--GHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (819)
Q Consensus 16 ~~~V~~lafsp~--~~~---~Latgs~Dg~V~IWdl-~~~~~i~~l--~--~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (819)
...|-|+.++|- +.+ +++.|..+..+.+.-. .+...+... . .-...|.-..|-.|..+|.++..||.+..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 468999999974 333 8888877766555433 333332222 1 12345666677777889999999999987
Q ss_pred EECC--CCeEEEEE--cCCCCCeEEEEEecCC-------------------------------------------CEEEE
Q 003445 86 WDLE--EAKIVRTL--TGHRSNCISVDFHPFG-------------------------------------------EFFAS 118 (819)
Q Consensus 86 WDl~--s~~~i~~l--~~h~~~I~sl~fsp~g-------------------------------------------~~Las 118 (819)
|-+. ++..-..- .-...++.--.|+..+ ..+++
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~ 689 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLAS 689 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEE
Confidence 7554 33211110 0011112111221111 12333
Q ss_pred EECCCcEEEEECCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEEC-----------C---CeEEEEECCCCeEEEEEe
Q 003445 119 GSLDTNLKIWDIRKKG--CIHTYKGHTRGVNAIRFTPDGRWVVSGGE-----------D---NTVKLWDLTAGKLLHDFK 182 (819)
Q Consensus 119 gs~Dg~I~IwDi~t~~--~i~~~~~h~~~I~sl~fspdg~~L~sgs~-----------D---g~I~IwDl~t~~~i~~~~ 182 (819)
+. .+.+.+.-+..-+ .+++..- ......+++.+....+.+.+. . ..++++|-.+-+.++..+
T Consensus 690 ~~-~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~he 767 (1096)
T KOG1897|consen 690 AN-GGALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHE 767 (1096)
T ss_pred ec-CCceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeecc
Confidence 22 2344444433211 1223222 233556677764433333322 1 246777776665554433
Q ss_pred cCC----CCeEEEEEeCC-CCEEEEEE----------CCCeEEEEECCCCeEEEEeCCC--CCCeeEEEEeCCCCEEEEE
Q 003445 183 CHE----GQIQCIDFHPH-EFLLATGS----------ADRTVKFWDLETFELIGSAGPE--TSGVRCLTFNPDGRTLLCG 245 (819)
Q Consensus 183 ~h~----~~I~sl~fspd-g~~Lasgs----------~Dg~I~iwDl~~~~~l~~~~~~--~~~I~sl~fspdg~~Lasg 245 (819)
... ..|.++.|..| +.++++|. ..|.|.+|.+..++.+.....+ .+.+.++..- +|++|| |
T Consensus 768 f~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA-~ 845 (1096)
T KOG1897|consen 768 FERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLA-G 845 (1096)
T ss_pred ccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEE-e
Confidence 211 23556668888 77888876 2477888887764333332211 3444554432 565554 4
Q ss_pred ECCCEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCCc
Q 003445 246 LHESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISR 300 (819)
Q Consensus 246 s~d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~ 300 (819)
-...+++|+|.+.+.+..-......+..+.. -.|..+++|.--+.+.+-..+..+
T Consensus 846 In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 846 INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 4668999999998776665555555555544 578888888877777776666555
No 391
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.47 E-value=0.7 Score=48.97 Aligned_cols=231 Identities=13% Similarity=0.116 Sum_probs=134.6
Q ss_pred CeEEEEEcCCC-CEEEEEECCCe-EEEEECCCCeEEEEEcCCCCC--eEEEEEecCCCEEEEEECC-----CcEEEEECC
Q 003445 61 GIDSVSFDSSE-VLVAAGAASGT-IKLWDLEEAKIVRTLTGHRSN--CISVDFHPFGEFFASGSLD-----TNLKIWDIR 131 (819)
Q Consensus 61 ~V~~l~fspdg-~~Lasgs~DG~-I~IWDl~s~~~i~~l~~h~~~--I~sl~fsp~g~~Lasgs~D-----g~I~IwDi~ 131 (819)
....++|+|.- +-++.+-.-|+ ..++|....+...++....+. --.=.|+|+|.+|...-.| |.|-|||.+
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 33457777743 34555555554 568898887766655432221 1123699999988876443 789999998
Q ss_pred CC-eEEEEEecCCCCeEEEEEcCCCCEEEEEEC------------------CCeEEEEECCCCeEEEEEe----cCCCCe
Q 003445 132 KK-GCIHTYKGHTRGVNAIRFTPDGRWVVSGGE------------------DNTVKLWDLTAGKLLHDFK----CHEGQI 188 (819)
Q Consensus 132 t~-~~i~~~~~h~~~I~sl~fspdg~~L~sgs~------------------Dg~I~IwDl~t~~~i~~~~----~h~~~I 188 (819)
.+ +.+..+..|.-.-..+.|.+||+.++.+.. .-.+.+.|..+|+.+.... .+.-.|
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi 228 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI 228 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence 53 455667788878889999999999887632 1234556666666554432 234457
Q ss_pred EEEEEeCCCCEEEEEECCCe-----EEEEECCCCeEEEEeCCC-------CCCeeEEEEeCCCCEEEEEECC--CEEEEE
Q 003445 189 QCIDFHPHEFLLATGSADRT-----VKFWDLETFELIGSAGPE-------TSGVRCLTFNPDGRTLLCGLHE--SLKVFS 254 (819)
Q Consensus 189 ~sl~fspdg~~Lasgs~Dg~-----I~iwDl~~~~~l~~~~~~-------~~~I~sl~fspdg~~Lasgs~d--~I~Vwd 254 (819)
..++..+||..++.+-..|. -.+=-...++.+.-+... ...|-+++.+.+..+++..+.. ...+||
T Consensus 229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d 308 (366)
T COG3490 229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD 308 (366)
T ss_pred eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence 77888777766655443321 011111223333332221 3457788888766666655443 478899
Q ss_pred ecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEE
Q 003445 255 WEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVW 294 (819)
Q Consensus 255 ~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW 294 (819)
.+++.......... ...+. ....=+++++.+|.+..+
T Consensus 309 a~tG~vv~~a~l~d--aaGva-~~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 309 AATGAVVSEAALPD--AAGVA-AAKGGFAVSSGQGRIIFY 345 (366)
T ss_pred cCCCcEEecccccc--cccce-eccCceEEecCCceEEec
Confidence 98887654322211 11222 223334455566666655
No 392
>PHA03098 kelch-like protein; Provisional
Probab=96.40 E-value=0.1 Score=61.70 Aligned_cols=183 Identities=14% Similarity=0.116 Sum_probs=93.2
Q ss_pred CCcEEEEEeCCC------eEEEEECCCCceEEEecCC--CCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEE
Q 003445 28 SSRVLVTGGEDH------KVNLWAIGKPNAILSLSGH--TSGIDSVSFDSSEVLVAAGAAS-----GTIKLWDLEEAKIV 94 (819)
Q Consensus 28 ~~~~Latgs~Dg------~V~IWdl~~~~~i~~l~~h--~~~V~~l~fspdg~~Lasgs~D-----G~I~IWDl~s~~~i 94 (819)
++.+++.||.++ .+..||..+.+....-.-. ......+. -++.+++.||.+ ..+..||..+.+..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 456777776543 4677887666553221111 11112222 256777778765 35778888776543
Q ss_pred EE--EcCCCCCeEEEEEecCCCEEEEEECC------CcEEEEECCCCeEEEEE--ecCCCCeEEEEEcCCCCEEEEEECC
Q 003445 95 RT--LTGHRSNCISVDFHPFGEFFASGSLD------TNLKIWDIRKKGCIHTY--KGHTRGVNAIRFTPDGRWVVSGGED 164 (819)
Q Consensus 95 ~~--l~~h~~~I~sl~fsp~g~~Lasgs~D------g~I~IwDi~t~~~i~~~--~~h~~~I~sl~fspdg~~L~sgs~D 164 (819)
.. +....... +++. -++..++.|+.+ ..+..||+.+.+....- ...... .+++. -++..++.|+.+
T Consensus 372 ~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~ 447 (534)
T PHA03098 372 EEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIY-HDGKIYVIGGIS 447 (534)
T ss_pred eCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEE-ECCEEEEECCcc
Confidence 21 11111111 2222 246677777632 35888998876543221 111111 12222 256666667643
Q ss_pred --------CeEEEEECCCCeEEEEE--ecCCCCeEEEEEeCCCCEEEEEECC-----CeEEEEECCCCe
Q 003445 165 --------NTVKLWDLTAGKLLHDF--KCHEGQIQCIDFHPHEFLLATGSAD-----RTVKFWDLETFE 218 (819)
Q Consensus 165 --------g~I~IwDl~t~~~i~~~--~~h~~~I~sl~fspdg~~Lasgs~D-----g~I~iwDl~~~~ 218 (819)
..+.+||..+++....- .........+. -++.+++.|+.+ +.+.+||..+.+
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 23888998876543221 11111111222 267777777754 468888887654
No 393
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.32 E-value=1.9 Score=45.86 Aligned_cols=192 Identities=13% Similarity=0.112 Sum_probs=121.9
Q ss_pred ceEEEEeccCCC--EEEEEEeeCCCcEEEEEeCCC--eEEEEECCCCceEEEecCC-CCCeEEEEEcCCCCEEEEEECCC
Q 003445 7 YKLQEFVAHSST--VNCLKIGRKSSRVLVTGGEDH--KVNLWAIGKPNAILSLSGH-TSGIDSVSFDSSEVLVAAGAASG 81 (819)
Q Consensus 7 ~kl~~~~~H~~~--V~~lafsp~~~~~Latgs~Dg--~V~IWdl~~~~~i~~l~~h-~~~V~~l~fspdg~~Lasgs~DG 81 (819)
+++..-..|... ...+.|.. ++.++-+.|.-| .|+.+|+.+++......-. .---..++...+. +....-.++
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~-l~qLTWk~~ 110 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDK-LYQLTWKEG 110 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTE-EEEEESSSS
T ss_pred eEEEEECCCCCcccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCE-EEEEEecCC
Confidence 344444556553 55788865 666777777666 6889999999887655422 2223344544443 333346789
Q ss_pred eEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-----CCeEEEEEcCCCC
Q 003445 82 TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT-----RGVNAIRFTPDGR 156 (819)
Q Consensus 82 ~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~-----~~I~sl~fspdg~ 156 (819)
...+||..+.+.+..+.- ...-+.++ .+++.|+.......|+++|..+.+....+.-.. ..++-+.|- +|.
T Consensus 111 ~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~ 186 (264)
T PF05096_consen 111 TGFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK 186 (264)
T ss_dssp EEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE
T ss_pred eEEEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE
Confidence 999999999999988863 45667777 457778777778889999999887776664321 246667776 566
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEec------------C---CCCeEEEEEeCCCCEEEEEE
Q 003445 157 WVVSGGEDNTVKLWDLTAGKLLHDFKC------------H---EGQIQCIDFHPHEFLLATGS 204 (819)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t~~~i~~~~~------------h---~~~I~sl~fspdg~~Lasgs 204 (819)
..+=.-....|...|..+|+....+.. + ..-.+.|+|+|....|...+
T Consensus 187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 555555677899999999998887641 0 23478999999765554443
No 394
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.31 E-value=0.94 Score=51.12 Aligned_cols=219 Identities=16% Similarity=0.189 Sum_probs=108.1
Q ss_pred CCcEEEEEe-CCCeEEEEECC----CCceEEEecC---CC----CCeEEEEEcCCCCEEEEEEC------CCeEEEEECC
Q 003445 28 SSRVLVTGG-EDHKVNLWAIG----KPNAILSLSG---HT----SGIDSVSFDSSEVLVAAGAA------SGTIKLWDLE 89 (819)
Q Consensus 28 ~~~~Latgs-~Dg~V~IWdl~----~~~~i~~l~~---h~----~~V~~l~fspdg~~Lasgs~------DG~I~IWDl~ 89 (819)
..++|+..+ ..+.|+|.|+. ..+..+.+.. +. .....+..-|+|++++++-. -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345666655 77899999986 3455555542 11 12233444578888877532 3678889988
Q ss_pred CCeEEEEEcCCC---CCeEEEEEecCCCEEEEEECC--------------------CcEEEEECCCCeEEEEEecCCC--
Q 003445 90 EAKIVRTLTGHR---SNCISVDFHPFGEFFASGSLD--------------------TNLKIWDIRKKGCIHTYKGHTR-- 144 (819)
Q Consensus 90 s~~~i~~l~~h~---~~I~sl~fsp~g~~Lasgs~D--------------------g~I~IwDi~t~~~i~~~~~h~~-- 144 (819)
+.+......... ..-..+.|.|..+.+++.... .++.+||+.+.+.++++.--..
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 888877766432 345678889988888887642 4799999999999999874332
Q ss_pred CeEEEEEcC--CCCEEEE-EECCCeEEEEEC-CCCe----EEEEEecC-----------------CCCeEEEEEeCCCCE
Q 003445 145 GVNAIRFTP--DGRWVVS-GGEDNTVKLWDL-TAGK----LLHDFKCH-----------------EGQIQCIDFHPHEFL 199 (819)
Q Consensus 145 ~I~sl~fsp--dg~~L~s-gs~Dg~I~IwDl-~t~~----~i~~~~~h-----------------~~~I~sl~fspdg~~ 199 (819)
....+.|.. +..+=++ +...+.|..|-- ..++ .+.++... ..-|+.|..+.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 245667754 3444333 334555555543 3443 22222110 234789999999999
Q ss_pred EEEEE-CCCeEEEEECCCC---eEEEEeC----------------CCCCCeeEEEEeCCCCEEEEEE
Q 003445 200 LATGS-ADRTVKFWDLETF---ELIGSAG----------------PETSGVRCLTFNPDGRTLLCGL 246 (819)
Q Consensus 200 Lasgs-~Dg~I~iwDl~~~---~~l~~~~----------------~~~~~I~sl~fspdg~~Lasgs 246 (819)
|...+ .+|.|+.||+..- +++.... .-.+...-+..|-||+.|++.+
T Consensus 326 LYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 88877 4899999999762 2333221 0122346677888888887653
No 395
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.28 E-value=0.0048 Score=62.97 Aligned_cols=140 Identities=15% Similarity=0.171 Sum_probs=80.6
Q ss_pred EEEEECCCeEEEEECCCCeEE-EEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE-EecCCCCeEEE-E
Q 003445 74 VAAGAASGTIKLWDLEEAKIV-RTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT-YKGHTRGVNAI-R 150 (819)
Q Consensus 74 Lasgs~DG~I~IWDl~s~~~i-~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~-~~~h~~~I~sl-~ 150 (819)
+..-+.+|.|.-+++...+.- +...-|.... ....-+..+++|+.+|.|++|.......... +..-...|.++ .
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~---~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQ---RVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcce---eecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 334466777777776543321 1111121111 1112346799999999999998863221111 11112223322 2
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC-CCeEEEEEeCCCCEEEEE--ECCCeEEEEECCC
Q 003445 151 FTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE-GQIQCIDFHPHEFLLATG--SADRTVKFWDLET 216 (819)
Q Consensus 151 fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~-~~I~sl~fspdg~~Lasg--s~Dg~I~iwDl~~ 216 (819)
-..++.+.++++.+|.|+.|++.-++.+.....|. .++.....+..+.++++. |.|..+++|++..
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 23356688899999999999999888777766666 444444444555555555 5666666666653
No 396
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.26 E-value=0.29 Score=44.88 Aligned_cols=100 Identities=15% Similarity=0.199 Sum_probs=69.9
Q ss_pred eEEEEEcC---CC-CEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEE
Q 003445 62 IDSVSFDS---SE-VLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH 137 (819)
Q Consensus 62 V~~l~fsp---dg-~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~ 137 (819)
|+++++.. +| ..|++|+.|..|++|+- .+.+..+. ..+.|.+++-... ..|+.+-.+|+|-+|+- ...++
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 55666643 33 57899999999999984 35666666 3456777776654 67999999999999985 44566
Q ss_pred EEecCCCCeEEEEEcC-C--C-CEEEEEECCCeEE
Q 003445 138 TYKGHTRGVNAIRFTP-D--G-RWVVSGGEDNTVK 168 (819)
Q Consensus 138 ~~~~h~~~I~sl~fsp-d--g-~~L~sgs~Dg~I~ 168 (819)
..+.... +.++++.. + | ..|++|-.+|.|-
T Consensus 76 RiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 6664444 66666553 2 2 2688888888764
No 397
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.26 E-value=0.36 Score=55.68 Aligned_cols=150 Identities=17% Similarity=0.275 Sum_probs=97.3
Q ss_pred CCeEEEEEecCCCEEEEEE---CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC----CCEEEEEECCCeEEEEECC-
Q 003445 102 SNCISVDFHPFGEFFASGS---LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD----GRWVVSGGEDNTVKLWDLT- 173 (819)
Q Consensus 102 ~~I~sl~fsp~g~~Lasgs---~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspd----g~~L~sgs~Dg~I~IwDl~- 173 (819)
.++..++|. ||+.++-.. .+|.+++=|- ..+..| ..|..+.|.|- -..|++.-....|.+|.+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 478889998 676555433 2444443332 233333 35889999983 3356666678899999875
Q ss_pred ----CCeEEEEEecCC---CC--eEEEEEeCCCCEEEEEECCCeEEEEECCCCe-EEEEeCCCCCCeeEEEEeCCCCEEE
Q 003445 174 ----AGKLLHDFKCHE---GQ--IQCIDFHPHEFLLATGSADRTVKFWDLETFE-LIGSAGPETSGVRCLTFNPDGRTLL 243 (819)
Q Consensus 174 ----t~~~i~~~~~h~---~~--I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~-~l~~~~~~~~~I~sl~fspdg~~La 243 (819)
.++.+..-.++- -+ -..+.|||....|++-.....-.+++++... .+..--...+-|.|.+|.+||+.|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 233333222221 11 2467799999998887766665677775432 2322224457799999999999999
Q ss_pred EEECCCEEEEEecCCc
Q 003445 244 CGLHESLKVFSWEPIR 259 (819)
Q Consensus 244 sgs~d~I~Vwd~~~~~ 259 (819)
++-...++.|-|+..+
T Consensus 172 VAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEeCCeEEEEEecCch
Confidence 9988888888887643
No 398
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.17 E-value=0.7 Score=47.68 Aligned_cols=217 Identities=16% Similarity=0.188 Sum_probs=122.1
Q ss_pred EeeCCCcEEEEEeCCCeEEEEECCCCceEE-EecCCCCCeEEEEEcCCC---CEEEEEECCCeEEEEE--CCCCeEEEEE
Q 003445 24 IGRKSSRVLVTGGEDHKVNLWAIGKPNAIL-SLSGHTSGIDSVSFDSSE---VLVAAGAASGTIKLWD--LEEAKIVRTL 97 (819)
Q Consensus 24 fsp~~~~~Latgs~Dg~V~IWdl~~~~~i~-~l~~h~~~V~~l~fspdg---~~Lasgs~DG~I~IWD--l~s~~~i~~l 97 (819)
|.-..+.++.+--..|.|.-||+.+.+... .+.+. ++..+.+--.+ .+.+.++..-.|--|| .+..+..+++
T Consensus 22 w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~ 99 (310)
T KOG4499|consen 22 WDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTL 99 (310)
T ss_pred eEEecceEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeec
Confidence 433355567776677888889987654433 22322 23333331111 2333333333344577 3344444442
Q ss_pred cC-----CCCCeEEEEEecCCCEEEEEEC-C---------CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-EE
Q 003445 98 TG-----HRSNCISVDFHPFGEFFASGSL-D---------TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV-SG 161 (819)
Q Consensus 98 ~~-----h~~~I~sl~fsp~g~~Lasgs~-D---------g~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~-sg 161 (819)
.. .......-..+|+|++++ |.. | |.++.|-.... +..+...-.--+.++|+.+.+.+. +-
T Consensus 100 ~ev~~d~kknR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h~--v~~i~~~v~IsNgl~Wd~d~K~fY~iD 176 (310)
T KOG4499|consen 100 FEVQPDRKKNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGHQ--VELIWNCVGISNGLAWDSDAKKFYYID 176 (310)
T ss_pred cccCchHHhcccccCccCCCCceee-eeeccccccccccccEEEEeccCCC--ceeeehhccCCccccccccCcEEEEEc
Confidence 21 123445556789999843 332 2 34444443211 112222222335688888776655 44
Q ss_pred ECCCeEEEEE--CCCCe-----EEEEEecC---C-CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCe
Q 003445 162 GEDNTVKLWD--LTAGK-----LLHDFKCH---E-GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGV 230 (819)
Q Consensus 162 s~Dg~I~IwD--l~t~~-----~i~~~~~h---~-~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I 230 (819)
+.+-.|.-|| +.+|. .+..++.. . -.--.++....|++.++.-..++|..+|..+|+.+..+......|
T Consensus 177 sln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qi 256 (310)
T KOG4499|consen 177 SLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQI 256 (310)
T ss_pred cCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCce
Confidence 5566787787 55553 33333321 1 112345556688888888889999999999999999998888999
Q ss_pred eEEEEeCC-CCEEEEE
Q 003445 231 RCLTFNPD-GRTLLCG 245 (819)
Q Consensus 231 ~sl~fspd-g~~Lasg 245 (819)
++++|--. -..|++.
T Consensus 257 tsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 257 TSCCFGGKNLDILYVT 272 (310)
T ss_pred EEEEecCCCccEEEEE
Confidence 99999533 2344443
No 399
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.10 E-value=1.1 Score=55.04 Aligned_cols=112 Identities=15% Similarity=0.193 Sum_probs=76.2
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEcCCCC--------CeEEEEEec----------------CCCEEEEEECCCcEE
Q 003445 71 EVLVAAGAASGTIKLWDLEEAKIVRTLTGHRS--------NCISVDFHP----------------FGEFFASGSLDTNLK 126 (819)
Q Consensus 71 g~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~--------~I~sl~fsp----------------~g~~Lasgs~Dg~I~ 126 (819)
+..|+.++.++.|.-.|..+|+.+-.+..... .+..+.+.. .+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 45677778889999999999998877753321 122333321 234788899999999
Q ss_pred EEECCCCeEEEEEecCCCCeE-------------EEEEcC--CCCEEEEEEC----------CCeEEEEECCCCeEEEEE
Q 003445 127 IWDIRKKGCIHTYKGHTRGVN-------------AIRFTP--DGRWVVSGGE----------DNTVKLWDLTAGKLLHDF 181 (819)
Q Consensus 127 IwDi~t~~~i~~~~~h~~~I~-------------sl~fsp--dg~~L~sgs~----------Dg~I~IwDl~t~~~i~~~ 181 (819)
-.|.++|+.+..+.. .+.|. .+.-.| .+..++.|+. +|.|+-+|.++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999887642 22111 111122 2345666643 688999999999999888
Q ss_pred ec
Q 003445 182 KC 183 (819)
Q Consensus 182 ~~ 183 (819)
..
T Consensus 353 ~~ 354 (764)
T TIGR03074 353 DP 354 (764)
T ss_pred ec
Confidence 63
No 400
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.09 Score=63.97 Aligned_cols=99 Identities=20% Similarity=0.359 Sum_probs=73.1
Q ss_pred cEEEEEeCCCeEEEEECCCC-ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEE-
Q 003445 30 RVLVTGGEDHKVNLWAIGKP-NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISV- 107 (819)
Q Consensus 30 ~~Latgs~Dg~V~IWdl~~~-~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl- 107 (819)
..++.|+..|.+-..|+... .....-..-.++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+..|..+..++
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 35788888888888887432 2122222346799999999999999999999999999999999998888776665544
Q ss_pred --EEecCCCEEEEEECCCcEEEEEC
Q 003445 108 --DFHPFGEFFASGSLDTNLKIWDI 130 (819)
Q Consensus 108 --~fsp~g~~Lasgs~Dg~I~IwDi 130 (819)
.+..++..++++...|. +|.+
T Consensus 180 ~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc--eEEE
Confidence 44445556777777776 4543
No 401
>PRK13684 Ycf48-like protein; Provisional
Probab=95.96 E-value=2.9 Score=46.42 Aligned_cols=149 Identities=11% Similarity=0.088 Sum_probs=89.0
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEE-ECCCCe-EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 003445 101 RSNCISVDFHPFGEFFASGSLDTNLKIW-DIRKKG-CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLL 178 (819)
Q Consensus 101 ~~~I~sl~fsp~g~~Lasgs~Dg~I~Iw-Di~t~~-~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i 178 (819)
...+.++.+.+++.+++++ ..|.+..- |- .++ .......-...++++.+.++++.++++ ..|.+.+=....|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 4568899999988766655 45655432 22 222 222222334678999999998876655 5677654334444433
Q ss_pred EEEec----CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeC---CCCCCeeEEEEeCCCCEEEEEECCCEE
Q 003445 179 HDFKC----HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG---PETSGVRCLTFNPDGRTLLCGLHESLK 251 (819)
Q Consensus 179 ~~~~~----h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~---~~~~~I~sl~fspdg~~Lasgs~d~I~ 251 (819)
..... ....+..+.+.+++..+++| .+|.+. .....++.-.... ......+.+.|..+++.+++|..+.|-
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il 326 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLL 326 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEE
Confidence 32221 12357889999988766655 567554 4445444433332 223457888988888888888767654
Q ss_pred EEE
Q 003445 252 VFS 254 (819)
Q Consensus 252 Vwd 254 (819)
.|+
T Consensus 327 ~~~ 329 (334)
T PRK13684 327 RYV 329 (334)
T ss_pred Eec
Confidence 443
No 402
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.89 E-value=0.0054 Score=72.49 Aligned_cols=174 Identities=18% Similarity=0.288 Sum_probs=102.9
Q ss_pred eccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC--CCceE-----EEecCCCCCeEEEEEcC---CCCEEEEEECCCe
Q 003445 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG--KPNAI-----LSLSGHTSGIDSVSFDS---SEVLVAAGAASGT 82 (819)
Q Consensus 13 ~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~--~~~~i-----~~l~~h~~~V~~l~fsp---dg~~Lasgs~DG~ 82 (819)
++..+.|-.++|-.-+...+. ..-|.+.||++. .|+.. .........+.-+.|+| +..++..+..+|.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 445667777777542222222 334779999873 33332 22233445566677765 6678888888999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 003445 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG 162 (819)
Q Consensus 83 I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs 162 (819)
|++.++..... ..+.+|...+..++|-..|-..+.+ ++|||..|+.++
T Consensus 207 i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~-------------------------------lSpDGtv~a~a~ 254 (1283)
T KOG1916|consen 207 IRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS-------------------------------LSPDGTVFAWAI 254 (1283)
T ss_pred eeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-------------------------------eCCCCcEEEEee
Confidence 99888765443 3455687777777765444222111 677777777777
Q ss_pred CCCeEEEEECC-----CCeEEEEEecCC-CCeEEEEEeCCC---------CEEEEEE-CCCeEEEEECCCCeEE
Q 003445 163 EDNTVKLWDLT-----AGKLLHDFKCHE-GQIQCIDFHPHE---------FLLATGS-ADRTVKFWDLETFELI 220 (819)
Q Consensus 163 ~Dg~I~IwDl~-----t~~~i~~~~~h~-~~I~sl~fspdg---------~~Lasgs-~Dg~I~iwDl~~~~~l 220 (819)
.||.++.|.+. ...+++.++.|+ .+-.|.-|+.+. .++++++ .+..+++|....++++
T Consensus 255 ~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 255 SDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 77766666542 334556666665 333333344321 1344443 4567999998888876
No 403
>PHA02790 Kelch-like protein; Provisional
Probab=95.85 E-value=0.36 Score=56.44 Aligned_cols=183 Identities=12% Similarity=0.008 Sum_probs=90.7
Q ss_pred CCcEEEEEeCCC-----eEEEEECCCCceEEEecCCCCCe-EEEEEcCCCCEEEEEECC--CeEEEEECCCCeEEE--EE
Q 003445 28 SSRVLVTGGEDH-----KVNLWAIGKPNAILSLSGHTSGI-DSVSFDSSEVLVAAGAAS--GTIKLWDLEEAKIVR--TL 97 (819)
Q Consensus 28 ~~~~Latgs~Dg-----~V~IWdl~~~~~i~~l~~h~~~V-~~l~fspdg~~Lasgs~D--G~I~IWDl~s~~~i~--~l 97 (819)
++.++++||.++ .+..||..+......-.-..... .+++ .-++.+.+.||.+ ..+..||..+++... .+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 556777887643 46778877655433221111111 1122 2367777777754 357888877654432 12
Q ss_pred cCCCCCeEEEEEecCCCEEEEEECCC---cEEEEECCCCeEEEEE--ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003445 98 TGHRSNCISVDFHPFGEFFASGSLDT---NLKIWDIRKKGCIHTY--KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDL 172 (819)
Q Consensus 98 ~~h~~~I~sl~fsp~g~~Lasgs~Dg---~I~IwDi~t~~~i~~~--~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl 172 (819)
.........+. -+|...+.|+.++ .+..||.++.+....- ....... +++ .-+|+..+.| |.+.+||.
T Consensus 350 ~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~G---G~~e~ydp 422 (480)
T PHA02790 350 LKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVG---RNAEFYCE 422 (480)
T ss_pred CCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEEC---CceEEecC
Confidence 21111112222 2577777777654 4678888766543221 1111111 222 2246656665 35678888
Q ss_pred CCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC-----CeEEEEECCCCe
Q 003445 173 TAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD-----RTVKFWDLETFE 218 (819)
Q Consensus 173 ~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~D-----g~I~iwDl~~~~ 218 (819)
.+++-...-.-.......-...-++++.++|+.+ ..+..||..+.+
T Consensus 423 ~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 423 SSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 7765432211111111111122367778888754 346666666543
No 404
>PHA03098 kelch-like protein; Provisional
Probab=95.83 E-value=0.23 Score=58.70 Aligned_cols=147 Identities=13% Similarity=0.095 Sum_probs=74.6
Q ss_pred CCCEEEEEECCC------eEEEEECCCCeEEEEE--cCCCCCeEEEEEecCCCEEEEEECC-----CcEEEEECCCCeEE
Q 003445 70 SEVLVAAGAASG------TIKLWDLEEAKIVRTL--TGHRSNCISVDFHPFGEFFASGSLD-----TNLKIWDIRKKGCI 136 (819)
Q Consensus 70 dg~~Lasgs~DG------~I~IWDl~s~~~i~~l--~~h~~~I~sl~fsp~g~~Lasgs~D-----g~I~IwDi~t~~~i 136 (819)
++.+++.||.++ .+..||..+.+....- .........+.+ ++..++.|+.+ ..+..||..+.+..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 556677776543 5778888776653221 111112222222 56777778765 34778888766533
Q ss_pred EEEec-CCCCeEEEEEcCCCCEEEEEECC------CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC---
Q 003445 137 HTYKG-HTRGVNAIRFTPDGRWVVSGGED------NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD--- 206 (819)
Q Consensus 137 ~~~~~-h~~~I~sl~fspdg~~L~sgs~D------g~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~D--- 206 (819)
..-.. +...-.+++. -+++.++.|+.+ ..+..||..+++....-......-...+...++.+++.|+.+
T Consensus 372 ~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 450 (534)
T PHA03098 372 EEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYID 450 (534)
T ss_pred eCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCC
Confidence 21110 1111112222 256677777632 358889988765432211111111111222356677777643
Q ss_pred -----CeEEEEECCCCeE
Q 003445 207 -----RTVKFWDLETFEL 219 (819)
Q Consensus 207 -----g~I~iwDl~~~~~ 219 (819)
..+.+||..+.+-
T Consensus 451 ~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 451 NIKVYNIVESYNPVTNKW 468 (534)
T ss_pred CCcccceEEEecCCCCce
Confidence 2388899877553
No 405
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.68 E-value=0.031 Score=67.81 Aligned_cols=100 Identities=21% Similarity=0.384 Sum_probs=76.7
Q ss_pred CCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEE
Q 003445 113 GEFFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCI 191 (819)
Q Consensus 113 g~~Lasgs~Dg~I~IwDi~t~-~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl 191 (819)
+..++.|+..|.+-..|.... ++...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.+.+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 567889999999999987653 2222223346789999999999999999999999999999999998888776665544
Q ss_pred ---EEeCCCCEEEEEECCCeEEEEEC
Q 003445 192 ---DFHPHEFLLATGSADRTVKFWDL 214 (819)
Q Consensus 192 ---~fspdg~~Lasgs~Dg~I~iwDl 214 (819)
.+..++..++++...|. +|.+
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEE
Confidence 44456667888877775 5654
No 406
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.66 E-value=3.5 Score=43.90 Aligned_cols=144 Identities=13% Similarity=0.078 Sum_probs=89.3
Q ss_pred CeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEE-CCCCeEE
Q 003445 61 GIDSVSFDSSEVLVAAGA---ASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWD-IRKKGCI 136 (819)
Q Consensus 61 ~V~~l~fspdg~~Lasgs---~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwD-i~t~~~i 136 (819)
.+...++++++..++... ....+.++... .....+. ....+..-.|.+++...+....+....++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999777655 33445555433 3222221 223677788999987777766666666663 2333221
Q ss_pred -EEEec--CCCCeEEEEEcCCCCEEEEEE---CCCeEEEEECC---CC------eEEEEEecCCCCeEEEEEeCCCCEEE
Q 003445 137 -HTYKG--HTRGVNAIRFTPDGRWVVSGG---EDNTVKLWDLT---AG------KLLHDFKCHEGQIQCIDFHPHEFLLA 201 (819)
Q Consensus 137 -~~~~~--h~~~I~sl~fspdg~~L~sgs---~Dg~I~IwDl~---t~------~~i~~~~~h~~~I~sl~fspdg~~La 201 (819)
..... -...|..+.++|||..++... .++.|.+--+. .+ ............+..+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 12221 112799999999999888765 35677776443 22 11111222346789999999998887
Q ss_pred EEECCC
Q 003445 202 TGSADR 207 (819)
Q Consensus 202 sgs~Dg 207 (819)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 776544
No 407
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.63 E-value=1.6 Score=46.71 Aligned_cols=169 Identities=11% Similarity=0.198 Sum_probs=111.7
Q ss_pred EeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003445 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGH-TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE 90 (819)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h-~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s 90 (819)
+.+-...|.++.|+|++.. |++......-.||=-.+|+.+.++.-. -.....|.|..+++++++--.++.+.++.+..
T Consensus 81 i~g~~~nvS~LTynp~~rt-LFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNPDTRT-LFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCCCcce-EEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 3445566999999996555 555555566667766778888876521 23456788888999999888899999998875
Q ss_pred CeEEEE-------Ec--CC-CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe-E--EEEEecC-------CCCeEEEE
Q 003445 91 AKIVRT-------LT--GH-RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG-C--IHTYKGH-------TRGVNAIR 150 (819)
Q Consensus 91 ~~~i~~-------l~--~h-~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~-~--i~~~~~h-------~~~I~sl~ 150 (819)
...+.. +. .+ ......++|.|....|+.+-.-.-+.||.+.... . +.....+ -..|.++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 532211 11 12 4567889999999988888887777777765332 1 1111111 13467788
Q ss_pred EcC-CCCEEEEEECCCeEEEEECCCCeEEEEEe
Q 003445 151 FTP-DGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182 (819)
Q Consensus 151 fsp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~ 182 (819)
|++ .+..|+.+.+++.+.-.|.. |..+..+.
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls 271 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLS-GEVIELLS 271 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence 887 55667777777788888865 44444443
No 408
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.59 E-value=5.6 Score=45.33 Aligned_cols=43 Identities=14% Similarity=-0.011 Sum_probs=36.1
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCC
Q 003445 186 GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETS 228 (819)
Q Consensus 186 ~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~ 228 (819)
..+.+++.+|++.+.|+...=|.|.++|+.++..+..+++...
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd 350 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD 350 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence 3478899999999999988889999999999888877766543
No 409
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.38 E-value=3.7 Score=43.67 Aligned_cols=144 Identities=16% Similarity=0.115 Sum_probs=89.5
Q ss_pred CeEEEEEecCCCEEEEEE---CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE-CCCCeEE
Q 003445 103 NCISVDFHPFGEFFASGS---LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD-LTAGKLL 178 (819)
Q Consensus 103 ~I~sl~fsp~g~~Lasgs---~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwD-l~t~~~i 178 (819)
.+.+.++++++..++... ....++++... ....... ....+..-.|++++...+....+...+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688899999999877665 33455555543 2222221 223678889999977666655566666663 3333222
Q ss_pred -EEEec--CCCCeEEEEEeCCCCEEEEEE---CCCeEEEEECC---CC------eEEEEeCCCCCCeeEEEEeCCCCEEE
Q 003445 179 -HDFKC--HEGQIQCIDFHPHEFLLATGS---ADRTVKFWDLE---TF------ELIGSAGPETSGVRCLTFNPDGRTLL 243 (819)
Q Consensus 179 -~~~~~--h~~~I~sl~fspdg~~Lasgs---~Dg~I~iwDl~---~~------~~l~~~~~~~~~I~sl~fspdg~~La 243 (819)
..... ..+.|..+.++|||..+|.-. .++.|++--+. .+ ..+.........+..+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 12221 122899999999999888766 35677776542 23 11122223356789999999998888
Q ss_pred EEECCC
Q 003445 244 CGLHES 249 (819)
Q Consensus 244 sgs~d~ 249 (819)
.+....
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 765443
No 410
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.29 E-value=6.6 Score=44.16 Aligned_cols=150 Identities=11% Similarity=0.110 Sum_probs=83.8
Q ss_pred eEEEEecc--CCCEEEEEEeeCCCcEEEEEe-----------CCC-eEEEEECCC--Cc--eEEEecCCCCCeEEEEEcC
Q 003445 8 KLQEFVAH--SSTVNCLKIGRKSSRVLVTGG-----------EDH-KVNLWAIGK--PN--AILSLSGHTSGIDSVSFDS 69 (819)
Q Consensus 8 kl~~~~~H--~~~V~~lafsp~~~~~Latgs-----------~Dg-~V~IWdl~~--~~--~i~~l~~h~~~V~~l~fsp 69 (819)
++.-+-.. -.....|+|.+ .++++++-. ..+ .|.+++-.+ ++ ....+...-.....++|.+
T Consensus 3 ~~~l~A~~p~~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~ 81 (367)
T TIGR02604 3 KVTLFAAEPLLRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV 81 (367)
T ss_pred EEEEEECCCccCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec
Confidence 44444433 35677899998 566555532 223 677776432 32 2334433344568899999
Q ss_pred CCCEEEEEECCCeEEEE-ECCCC-----e--EE-EEEcC----CCCCeEEEEEecCCCEEEEEEC---------------
Q 003445 70 SEVLVAAGAASGTIKLW-DLEEA-----K--IV-RTLTG----HRSNCISVDFHPFGEFFASGSL--------------- 121 (819)
Q Consensus 70 dg~~Lasgs~DG~I~IW-Dl~s~-----~--~i-~~l~~----h~~~I~sl~fsp~g~~Lasgs~--------------- 121 (819)
++ +++ ++.. .|..| |.... + .+ ..+.. +......++|.|+|.+.++-+.
T Consensus 82 ~G-lyV-~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~ 158 (367)
T TIGR02604 82 GG-VYV-ATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDES 158 (367)
T ss_pred CC-EEE-eCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCc
Confidence 88 444 3444 45444 54311 2 12 22322 1344778999999987655442
Q ss_pred ----CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 003445 122 ----DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG 162 (819)
Q Consensus 122 ----Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs 162 (819)
.|.|.-+|..+++......++ .....++|+++|+++++-.
T Consensus 159 ~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 159 RQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 145666666655433222333 3356899999998877644
No 411
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.27 E-value=1.8 Score=44.74 Aligned_cols=136 Identities=17% Similarity=0.193 Sum_probs=84.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCC--------CCeEEEEEecCCCEE-EEEECCCcEEEEE
Q 003445 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHR--------SNCISVDFHPFGEFF-ASGSLDTNLKIWD 129 (819)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~--------~~I~sl~fsp~g~~L-asgs~Dg~I~IwD 129 (819)
....+.-..+|+|+++ .|.....=-.+....+.....+.+|. .--..++|..+.+.+ ++-+.+-.|.-||
T Consensus 108 knR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred hcccccCccCCCCcee-eeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 3456677789999984 44332111111212222222233332 223568898777654 4456677887787
Q ss_pred --CCCCe-----EEEEEec----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeC
Q 003445 130 --IRKKG-----CIHTYKG----HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHP 195 (819)
Q Consensus 130 --i~t~~-----~i~~~~~----h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fsp 195 (819)
..+|. .+..++. ....--.++...+|++.++....|+|...|..+|+.+.+++.....|++++|--
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 54543 2333322 011123455566889999999999999999999999999998899999999953
No 412
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.19 E-value=6.5 Score=43.57 Aligned_cols=225 Identities=15% Similarity=0.177 Sum_probs=115.7
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce---EEEec----CCCCCeEEEEEcCC---CCEEEEEEC-C------
Q 003445 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA---ILSLS----GHTSGIDSVSFDSS---EVLVAAGAA-S------ 80 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~---i~~l~----~h~~~V~~l~fspd---g~~Lasgs~-D------ 80 (819)
.-+.|+|.|+ +++|+ +...|.|.+++ ..+.. +..+. ........++|+|+ ..+|+.... .
T Consensus 3 ~P~~~a~~pd-G~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPD-GRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETT-SCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCC-CcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 4678999994 66655 56699999999 34443 33331 34567899999994 233333322 1
Q ss_pred --CeEEEEECCCC-------e-EEEEEcC---CCCCeEEEEEecCCCEEEEEECCC-------------cEEEEECCCC-
Q 003445 81 --GTIKLWDLEEA-------K-IVRTLTG---HRSNCISVDFHPFGEFFASGSLDT-------------NLKIWDIRKK- 133 (819)
Q Consensus 81 --G~I~IWDl~s~-------~-~i~~l~~---h~~~I~sl~fsp~g~~Lasgs~Dg-------------~I~IwDi~t~- 133 (819)
..|.-|.+..+ + ++..+.. .......|.|.|+|.++++.+..+ .|.-.+....
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~ 159 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSI 159 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcC
Confidence 24555555443 1 1122222 334567799999997766655433 2333332211
Q ss_pred -------------eEEEEEecCCCCeEEEEEcCC-CCEEEEE-ECCCeEEEEECCCC-----------------------
Q 003445 134 -------------GCIHTYKGHTRGVNAIRFTPD-GRWVVSG-GEDNTVKLWDLTAG----------------------- 175 (819)
Q Consensus 134 -------------~~i~~~~~h~~~I~sl~fspd-g~~L~sg-s~Dg~I~IwDl~t~----------------------- 175 (819)
..+. -.++.. ...++|+|. |.++++= +.++.=.|.-+..|
T Consensus 160 p~dnP~~~~~~~~~~i~-A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIY-AYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp -TTSTTTTSTTSTTTEE-EE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCCCccccCCCceEEEE-EeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 0011 112222 457899998 6544331 22222122112111
Q ss_pred ------eEEEEEecCCCCeEEEEEeC-------CCCEEEEEECCCeEEEEECCCCeEEEE----eCCCCCCeeEEEEeCC
Q 003445 176 ------KLLHDFKCHEGQIQCIDFHP-------HEFLLATGSADRTVKFWDLETFELIGS----AGPETSGVRCLTFNPD 238 (819)
Q Consensus 176 ------~~i~~~~~h~~~I~sl~fsp-------dg~~Lasgs~Dg~I~iwDl~~~~~l~~----~~~~~~~I~sl~fspd 238 (819)
.++..+. +...+..+.|.. .|.++++....+.|....+.....+.. +......+..+++.||
T Consensus 238 ~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD 316 (331)
T PF07995_consen 238 SCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD 316 (331)
T ss_dssp S-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred CCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence 1222333 335567777764 355666666677888888875433221 2334447999999999
Q ss_pred CCEEEEEECC
Q 003445 239 GRTLLCGLHE 248 (819)
Q Consensus 239 g~~Lasgs~d 248 (819)
|.++++...+
T Consensus 317 G~Lyv~~d~~ 326 (331)
T PF07995_consen 317 GALYVSDDSD 326 (331)
T ss_dssp SEEEEEE-TT
T ss_pred CeEEEEECCC
Confidence 9888776533
No 413
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.13 E-value=0.016 Score=68.75 Aligned_cols=173 Identities=16% Similarity=0.288 Sum_probs=106.4
Q ss_pred ecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECC--CCeEE-----EEEcCCCCCeEEEEEec---CCCEEEEEECCC
Q 003445 55 LSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLE--EAKIV-----RTLTGHRSNCISVDFHP---FGEFFASGSLDT 123 (819)
Q Consensus 55 l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~--s~~~i-----~~l~~h~~~I~sl~fsp---~g~~Lasgs~Dg 123 (819)
+++..+.|-.+.|.. +...+. -.-|.+.+||+. .|++. .........+.-+.|+| +.-++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 345677888888832 211111 223678899875 34332 22233334455566665 456788888888
Q ss_pred cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEE
Q 003445 124 NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATG 203 (819)
Q Consensus 124 ~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasg 203 (819)
.|++..+.+... ..+.+|...+..++|-..|-.++.+ ++|||..++..
T Consensus 206 ~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~-------------------------------lSpDGtv~a~a 253 (1283)
T KOG1916|consen 206 EIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS-------------------------------LSPDGTVFAWA 253 (1283)
T ss_pred ceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-------------------------------eCCCCcEEEEe
Confidence 888877654432 3455688888888876555433322 78999999999
Q ss_pred ECCCeEEEEECC-----CCeEEEEeCCCC-CCeeEEEEeCC-------C--CEEEEEECC--CEEEEEecCCcee
Q 003445 204 SADRTVKFWDLE-----TFELIGSAGPET-SGVRCLTFNPD-------G--RTLLCGLHE--SLKVFSWEPIRCH 261 (819)
Q Consensus 204 s~Dg~I~iwDl~-----~~~~l~~~~~~~-~~I~sl~fspd-------g--~~Lasgs~d--~I~Vwd~~~~~~~ 261 (819)
+.||.+++|.+. .-.+++.+++|. ++-.|.-|+.+ + .+++++++- .+++|.-..-+|+
T Consensus 254 ~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 254 ISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 999988888653 234556677776 33333334432 2 234455443 5999988877776
No 414
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.12 E-value=8 Score=44.21 Aligned_cols=151 Identities=14% Similarity=0.219 Sum_probs=94.7
Q ss_pred EEEEEEee-----CCCcEEEEEeCCCeEEEEECCCCc-----eEEEecCCCCCeEEEEEcC----CC-CEEEEEECCCeE
Q 003445 19 VNCLKIGR-----KSSRVLVTGGEDHKVNLWAIGKPN-----AILSLSGHTSGIDSVSFDS----SE-VLVAAGAASGTI 83 (819)
Q Consensus 19 V~~lafsp-----~~~~~Latgs~Dg~V~IWdl~~~~-----~i~~l~~h~~~V~~l~fsp----dg-~~Lasgs~DG~I 83 (819)
..|++..+ ++...+++|+..|.++||+..... .+... .-..+|..++.-. .+ ..||+ -.-..+
T Consensus 22 ~~~l~v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl 99 (418)
T PF14727_consen 22 QGSLCVGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKL 99 (418)
T ss_pred CceEEEEcccCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEE
Confidence 34555543 355689999999999999984432 22222 2457888887642 23 34444 567888
Q ss_pred EEEECCC--Ce-------EEEEEcCCC--CCeEEEEEecCC-----CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeE
Q 003445 84 KLWDLEE--AK-------IVRTLTGHR--SNCISVDFHPFG-----EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVN 147 (819)
Q Consensus 84 ~IWDl~s--~~-------~i~~l~~h~--~~I~sl~fsp~g-----~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~ 147 (819)
.+|.+.. |. .+..+..|. .....+++-|.| .++++-+.||.+.+|+-+.......+.. ----.
T Consensus 100 ~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPg 178 (418)
T PF14727_consen 100 SVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPG 178 (418)
T ss_pred EEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCc
Confidence 8888731 11 122222232 234455554433 5788899999999999765544444433 22234
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEC
Q 003445 148 AIRFTPDGRWVVSGGEDNTVKLWDL 172 (819)
Q Consensus 148 sl~fspdg~~L~sgs~Dg~I~IwDl 172 (819)
.++|.+.-..|++++.+..|..|..
T Consensus 179 Pl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 179 PLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CeEEeecCCEEEEecCceeEEEecH
Confidence 5778888888999998888888865
No 415
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=95.09 E-value=6.5 Score=43.00 Aligned_cols=228 Identities=9% Similarity=-0.016 Sum_probs=116.4
Q ss_pred cEEEEEeCCCeEEEEECCC--CceEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeE-------------
Q 003445 30 RVLVTGGEDHKVNLWAIGK--PNAILSLSGHTSGIDSVSFDSSEVLVAAGA-ASGTIKLWDLEEAKI------------- 93 (819)
Q Consensus 30 ~~Latgs~Dg~V~IWdl~~--~~~i~~l~~h~~~V~~l~fspdg~~Lasgs-~DG~I~IWDl~s~~~------------- 93 (819)
++|+.|.++| +++.++.. ....+.+ +...|+++...+..+.|++-+ ....++++++..-..
T Consensus 14 ~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~ 90 (302)
T smart00036 14 KWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR 90 (302)
T ss_pred cEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence 6799999999 55555654 2333322 466899999988777665544 334599999842221
Q ss_pred --EEEEcCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCC--e--EEEEE---e-cCCCCeEEEEEcCC--CCEEEE
Q 003445 94 --VRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKK--G--CIHTY---K-GHTRGVNAIRFTPD--GRWVVS 160 (819)
Q Consensus 94 --i~~l~~h~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~t~--~--~i~~~---~-~h~~~I~sl~fspd--g~~L~s 160 (819)
.....+|...+..+...... ..++++.....|.++..... + ....+ . .-..++..+..+++ ...++.
T Consensus 91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcv 170 (302)
T smart00036 91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICI 170 (302)
T ss_pred ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEE
Confidence 01122344444444444222 23444555667777654322 1 11110 0 01123333333332 456777
Q ss_pred EECCCeEEEEECCC--CeEEE---E--EecCC-CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEE--EEeCCCCCCe
Q 003445 161 GGEDNTVKLWDLTA--GKLLH---D--FKCHE-GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI--GSAGPETSGV 230 (819)
Q Consensus 161 gs~Dg~I~IwDl~t--~~~i~---~--~~~h~-~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l--~~~~~~~~~I 230 (819)
|+..+...++++.. ..... . ..... .++ ++..-+++.+|++- |....+.|....... ..+ .-...+
T Consensus 171 G~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~-~i~~l~~~e~Llc~--~~~~v~Vn~~G~~~~r~~~l-~w~~~p 246 (302)
T smart00036 171 GSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPI-SVVQVPRDEFLLCY--DEFGVFVNLYGKRRSRNPIL-HWEFMP 246 (302)
T ss_pred EEcCCCCeEEEEeecccccccccccccccccccCce-EEEEECCCeEEEEE--CcEEEEEeCCCCccccceEE-EcCCcc
Confidence 77653334444432 11000 0 11111 233 33334455555554 444556665531111 111 123445
Q ss_pred eEEEEeCCCCEEEEEECCCEEEEEecCCceeeeeec
Q 003445 231 RCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDV 266 (819)
Q Consensus 231 ~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~ 266 (819)
.++++. ..+|++-..+.|.|+++.+++..+.+..
T Consensus 247 ~~~~~~--~pyll~~~~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 247 ESFAYH--SPYLLAFHDNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred cEEEEE--CCEEEEEcCCcEEEEECCCCceEEEEec
Confidence 677776 3577777788899999999887766643
No 416
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.06 E-value=0.69 Score=53.48 Aligned_cols=148 Identities=14% Similarity=0.175 Sum_probs=92.1
Q ss_pred CCEEEEEEeeCCCcEEEEEe--CCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCC----CEEEEEECCCeEEEEECC-
Q 003445 17 STVNCLKIGRKSSRVLVTGG--EDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSE----VLVAAGAASGTIKLWDLE- 89 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs--~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg----~~Lasgs~DG~I~IWDl~- 89 (819)
.+|..++|. ||.+++.|.- .+|.+++ .+.+.+..| ..|..+.|.|-+ --+++.-....|.+|-+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kf---Gds~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKF---GDSKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCcccc---CCccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 478889998 3666666653 3444433 223333333 468899998843 234445678899999885
Q ss_pred ----CCeEEEEEcCCC-C--C--eEEEEEecCCCEEEEEECCCcEEEEECCCC--eEEEEEecCCCCeEEEEEcCCCCEE
Q 003445 90 ----EAKIVRTLTGHR-S--N--CISVDFHPFGEFFASGSLDTNLKIWDIRKK--GCIHTYKGHTRGVNAIRFTPDGRWV 158 (819)
Q Consensus 90 ----s~~~i~~l~~h~-~--~--I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~--~~i~~~~~h~~~I~sl~fspdg~~L 158 (819)
.++.+..-..+- . + -..+.|||....|++-.....-.+++++.. .....++ -.+.|.|.+|.+||+.|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEE
Confidence 233332222111 1 1 135679999998888776665556666533 3334454 45779999999999988
Q ss_pred EEEECC-CeEEEEECC
Q 003445 159 VSGGED-NTVKLWDLT 173 (819)
Q Consensus 159 ~sgs~D-g~I~IwDl~ 173 (819)
+.+-.. =.-++||-.
T Consensus 171 VVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEeCCeEEEEEecCc
Confidence 876433 246788854
No 417
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.93 E-value=0.077 Score=54.37 Aligned_cols=105 Identities=22% Similarity=0.296 Sum_probs=68.2
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEE-EecCCCCCeEE-EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCC-CCe
Q 003445 28 SSRVLVTGGEDHKVNLWAIGKPNAIL-SLSGHTSGIDS-VSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHR-SNC 104 (819)
Q Consensus 28 ~~~~Latgs~Dg~V~IWdl~~~~~i~-~l~~h~~~V~~-l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~-~~I 104 (819)
.+.-+++|+.+|.|.+|+........ .+..-...|.+ |.-..++.+.++++.+|.|+.|++.-.+.+.....|. .++
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 34458899999999999986221111 11111223333 2223456689999999999999999999888877777 455
Q ss_pred EEEEEecCCCEEEEE--ECCCcEEEEECCC
Q 003445 105 ISVDFHPFGEFFASG--SLDTNLKIWDIRK 132 (819)
Q Consensus 105 ~sl~fsp~g~~Lasg--s~Dg~I~IwDi~t 132 (819)
..+.....+.+++++ |.|..++.|++..
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchhh
Confidence 555555555666665 6666666666643
No 418
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.81 E-value=9.5 Score=43.53 Aligned_cols=83 Identities=16% Similarity=0.249 Sum_probs=57.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCC-eEEEEEeCC-----------------CC-EEEE
Q 003445 142 HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ-IQCIDFHPH-----------------EF-LLAT 202 (819)
Q Consensus 142 h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~-I~sl~fspd-----------------g~-~Las 202 (819)
....+.+++.+|++++.++...-|.|.++|+.++..++.+++.... +.-+..... .. +++-
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 3445789999999998888877899999999999888888764432 111111110 11 3334
Q ss_pred EECCCeEEEEECCCCeEEEEeC
Q 003445 203 GSADRTVKFWDLETFELIGSAG 224 (819)
Q Consensus 203 gs~Dg~I~iwDl~~~~~l~~~~ 224 (819)
.-.-|.|.||++++|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 4567899999999988876654
No 419
>PHA02790 Kelch-like protein; Provisional
Probab=94.80 E-value=1.2 Score=52.19 Aligned_cols=183 Identities=11% Similarity=0.012 Sum_probs=91.9
Q ss_pred CCCEEEEEECCC-----cEEEEECCCCeEEEEE--ecCCCCeEEEEEcCCCCEEEEEECC--CeEEEEECCCCeEEEEEe
Q 003445 112 FGEFFASGSLDT-----NLKIWDIRKKGCIHTY--KGHTRGVNAIRFTPDGRWVVSGGED--NTVKLWDLTAGKLLHDFK 182 (819)
Q Consensus 112 ~g~~Lasgs~Dg-----~I~IwDi~t~~~i~~~--~~h~~~I~sl~fspdg~~L~sgs~D--g~I~IwDl~t~~~i~~~~ 182 (819)
++..+++|+.++ .+..||..+......- ....... +++ .-+|...+.|+.+ ..+..||..+++....-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 355667776543 4677888876543321 1111111 222 2357777777754 357888877654322111
Q ss_pred cCCCCeEEEEEeCCCCEEEEEECCC---eEEEEECCCCeEEEE--eCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecC
Q 003445 183 CHEGQIQCIDFHPHEFLLATGSADR---TVKFWDLETFELIGS--AGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEP 257 (819)
Q Consensus 183 ~h~~~I~sl~fspdg~~Lasgs~Dg---~I~iwDl~~~~~l~~--~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~ 257 (819)
-...........-+|++.+.|+.++ .+..||.++.+-... +....... ++ ..-+|++.+.|+ ...+||.++
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~GG--~~e~ydp~~ 424 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVGR--NAEFYCESS 424 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEECC--ceEEecCCC
Confidence 1111111122233677888887654 477888876543322 11111111 22 233566666663 356787765
Q ss_pred Cceeeeeeccccc-eeEeEecCCCEEEEEEcC-----CeEEEEEecCCc
Q 003445 258 IRCHDAVDVGWSR-LSDLNVHEGKLLGCSYNQ-----SCVGVWVVDISR 300 (819)
Q Consensus 258 ~~~~~~~~~~~s~-i~~l~~~dg~lLa~~~~D-----g~V~IW~ld~~~ 300 (819)
.+-...-+..... -..+...+|++.++|+.+ ..|.+||.+..+
T Consensus 425 ~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 425 NTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 5433322222211 123445788888888754 345666665543
No 420
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.56 E-value=3.8 Score=50.16 Aligned_cols=152 Identities=11% Similarity=0.151 Sum_probs=103.7
Q ss_pred CEEEEEEeeCCCcEEEEEe----------CCCeEEEEECCCCceEEEecCC--CCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 18 TVNCLKIGRKSSRVLVTGG----------EDHKVNLWAIGKPNAILSLSGH--TSGIDSVSFDSSEVLVAAGAASGTIKL 85 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latgs----------~Dg~V~IWdl~~~~~i~~l~~h--~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (819)
.|.++.|..+.+.++++|. ..|.|.||.+.+.+.+..+..+ .+.+.++..- +|++||. -...|++
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~--In~~vrL 852 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAG--INQSVRL 852 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEe--cCcEEEE
Confidence 4566678876577788774 3478888888765554444332 3455554432 5666654 5678999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC--CeEEEEEe-cCCCCeEEEEEcCCCCEEEEEE
Q 003445 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK--KGCIHTYK-GHTRGVNAIRFTPDGRWVVSGG 162 (819)
Q Consensus 86 WDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t--~~~i~~~~-~h~~~I~sl~fspdg~~L~sgs 162 (819)
|++.+.+.++.-..+..++..+...-.|+.+++|..-+.+.+...+. +.....-+ .+..+++++.+-.+ ..++-+.
T Consensus 853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~-d~ylgae 931 (1096)
T KOG1897|consen 853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDD-DTYLGAE 931 (1096)
T ss_pred EEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecC-ceEEeec
Confidence 99999988888888889999999999999999999888777665443 33333222 35667778777744 4455556
Q ss_pred CCCeEEEEECC
Q 003445 163 EDNTVKLWDLT 173 (819)
Q Consensus 163 ~Dg~I~IwDl~ 173 (819)
.+|.+.+....
T Consensus 932 ~~gNlf~v~~d 942 (1096)
T KOG1897|consen 932 NSGNLFTVRKD 942 (1096)
T ss_pred ccccEEEEEec
Confidence 67777766543
No 421
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.32 E-value=0.29 Score=59.97 Aligned_cols=179 Identities=11% Similarity=0.014 Sum_probs=105.2
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCC----------------eEEEEEcCCC-CCeEEEEEecCCCEEEEE--ECCCc
Q 003445 64 SVSFDSSEVLVAAGAASGTIKLWDLEEA----------------KIVRTLTGHR-SNCISVDFHPFGEFFASG--SLDTN 124 (819)
Q Consensus 64 ~l~fspdg~~Lasgs~DG~I~IWDl~s~----------------~~i~~l~~h~-~~I~sl~fsp~g~~Lasg--s~Dg~ 124 (819)
.++.++.-.++++++..+.+.++-...- .....+..|. -.+..+...+|+...++. +.+-.
T Consensus 46 ~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~ 125 (1405)
T KOG3630|consen 46 NLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEA 125 (1405)
T ss_pred hhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCce
Confidence 3455555555556666666666543211 1112222232 244455555676654443 33447
Q ss_pred EEEEECCCCeEEE-----EEe------cCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEE-EEEecCCCCeEEE
Q 003445 125 LKIWDIRKKGCIH-----TYK------GHTRGVNAIRFTPDGR-WVVSGGEDNTVKLWDLTAGKLL-HDFKCHEGQIQCI 191 (819)
Q Consensus 125 I~IwDi~t~~~i~-----~~~------~h~~~I~sl~fspdg~-~L~sgs~Dg~I~IwDl~t~~~i-~~~~~h~~~I~sl 191 (819)
|+.||+++...-. -++ .......++.|+|.-. ..+....|+.|++..+...... ..+. .....+++
T Consensus 126 v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav 204 (1405)
T KOG3630|consen 126 VYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAV 204 (1405)
T ss_pred EEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeE
Confidence 8999997543211 111 1233456788888432 3455667888888876543222 2222 34568999
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC----CCCCeeEEEEeCCCCEEEE
Q 003445 192 DFHPHEFLLATGSADRTVKFWDLETFELIGSAGP----ETSGVRCLTFNPDGRTLLC 244 (819)
Q Consensus 192 ~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~----~~~~I~sl~fspdg~~Las 244 (819)
+|+|.|+.+++|-..|++.-|-.. ++....+.. ....|.+++|-..-.++++
T Consensus 205 ~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 205 LWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred EeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 999999999999999999988654 333333221 1467899999877777664
No 422
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.24 E-value=9.7 Score=41.20 Aligned_cols=217 Identities=14% Similarity=0.161 Sum_probs=123.9
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECC------CCc-eEEEecC-----CCCCeEEEEEcCCCC------------E
Q 003445 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIG------KPN-AILSLSG-----HTSGIDSVSFDSSEV------------L 73 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latgs~Dg~V~IWdl~------~~~-~i~~l~~-----h~~~V~~l~fspdg~------------~ 73 (819)
.-+.|+|+| .+.+-++....+...+||.. ..+ .+..+.. .....+.+.|+.... .
T Consensus 24 N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 457899999 66666777777899999985 222 2333332 234678888875332 2
Q ss_pred EEEEECCCeEEEEECCCCeE-----EEEEc-CCCCCe-EEEEEec--CCCEEEEE-ECCCcEEEEECCCCeEEEEEecCC
Q 003445 74 VAAGAASGTIKLWDLEEAKI-----VRTLT-GHRSNC-ISVDFHP--FGEFFASG-SLDTNLKIWDIRKKGCIHTYKGHT 143 (819)
Q Consensus 74 Lasgs~DG~I~IWDl~s~~~-----i~~l~-~h~~~I-~sl~fsp--~g~~Lasg-s~Dg~I~IwDi~t~~~i~~~~~h~ 143 (819)
++.++.||+|.-|...-+.. ...+. .....| ..+++.. .+.+|..+ -..+.|-+||-.-.+ +..-....
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~-~~~~g~F~ 181 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP-PPLPGSFI 181 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc-ccCCCCcc
Confidence 56778999999998532221 11222 112223 3444443 24444443 457888888753221 11100000
Q ss_pred CC-------------------eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec--CCCCeEEEEEeC------C
Q 003445 144 RG-------------------VNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC--HEGQIQCIDFHP------H 196 (819)
Q Consensus 144 ~~-------------------I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~--h~~~I~sl~fsp------d 196 (819)
++ |+-..-.++++.=+.|---|.|-+||+. |..++.+.. .-..-+.|+..| .
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 10 1111112222222333445789999976 777777742 223456777766 3
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeCCCC------CCeeEEEEeC
Q 003445 197 EFLLATGSADRTVKFWDLETFELIGSAGPET------SGVRCLTFNP 237 (819)
Q Consensus 197 g~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~------~~I~sl~fsp 237 (819)
+.+|+---.||+|..||..+++.+..+.... ..++.|.|..
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 6677777789999999999998887765432 2346666654
No 423
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=94.15 E-value=11 Score=41.65 Aligned_cols=95 Identities=14% Similarity=0.116 Sum_probs=43.7
Q ss_pred CCcEEEEEeCC-CeEEEEECCCCc-eEEEecCCC--CCeEEEEEcCCCCEEEEEECC-----------CeEEEEECCCCe
Q 003445 28 SSRVLVTGGED-HKVNLWAIGKPN-AILSLSGHT--SGIDSVSFDSSEVLVAAGAAS-----------GTIKLWDLEEAK 92 (819)
Q Consensus 28 ~~~~Latgs~D-g~V~IWdl~~~~-~i~~l~~h~--~~V~~l~fspdg~~Lasgs~D-----------G~I~IWDl~s~~ 92 (819)
++.+.++|+.. ..+..+|+.... .-..+..-. .........-++++.+.|+.+ ..+..||..+.+
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~ 96 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS 96 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCE
Confidence 45666666543 456677763221 111222111 111111122356777777753 247788887765
Q ss_pred EEEEEcCCCCCeE--EEEEecCCCEEEEEECC
Q 003445 93 IVRTLTGHRSNCI--SVDFHPFGEFFASGSLD 122 (819)
Q Consensus 93 ~i~~l~~h~~~I~--sl~fsp~g~~Lasgs~D 122 (819)
....-........ +....-+++..+.|+.+
T Consensus 97 W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 97 WQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred EecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 4432211111111 11112367777877754
No 424
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.06 E-value=1.7 Score=51.88 Aligned_cols=110 Identities=16% Similarity=0.222 Sum_probs=73.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEe--CCCCEEEEEECCCeEEEEECC------
Q 003445 145 GVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK-CHEGQIQCIDFH--PHEFLLATGSADRTVKFWDLE------ 215 (819)
Q Consensus 145 ~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~-~h~~~I~sl~fs--pdg~~Lasgs~Dg~I~iwDl~------ 215 (819)
...-+.-+.-++..++-+....+.|||.+.+....+-. ...+.|..+.|. |+|..+++.+..+.|.+|.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34445555555555554455679999999887554433 347789999986 578888888888999988542
Q ss_pred ---CCeEEEEe--CCC-CCCeeEEEEeCCCCEEEEEECCCEEEEEe
Q 003445 216 ---TFELIGSA--GPE-TSGVRCLTFNPDGRTLLCGLHESLKVFSW 255 (819)
Q Consensus 216 ---~~~~l~~~--~~~-~~~I~sl~fspdg~~Lasgs~d~I~Vwd~ 255 (819)
.+..+..+ ..+ ..+|.+..|.++|. |++|+++.+.||+-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGSGNQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCe-EEEEeCCEEEEECC
Confidence 22333332 223 36799999999985 55566777777763
No 425
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.05 E-value=13 Score=41.80 Aligned_cols=193 Identities=16% Similarity=0.061 Sum_probs=114.0
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCC--CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCC-CeEEE
Q 003445 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHT--SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRS-NCISV 107 (819)
Q Consensus 31 ~Latgs~Dg~V~IWdl~~~~~i~~l~~h~--~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~-~I~sl 107 (819)
.++++..+|.|.-.|..++..+.....-. ..+..-.+..+|+ |+.++.+|.+..+|..+|+.+........ .+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 35556788888888988888765443221 2233333333666 66778899999999989998877775551 11111
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCC---CeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEEe
Q 003445 108 DFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTR---GVNAIRFTPDGRWVVSGGE--DNTVKLWDLTAGKLLHDFK 182 (819)
Q Consensus 108 ~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~---~I~sl~fspdg~~L~sgs~--Dg~I~IwDl~t~~~i~~~~ 182 (819)
..-.++ .+..++.++.++..|..++..+..+..... .+..--.. ....++.+.. ++.+.-.|..+|......+
T Consensus 149 ~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 149 PVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred cEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence 122122 344444789999999998988777653221 11111111 2234555555 6678888888888777643
Q ss_pred cCC----CCeEEEEEeCC-----CCEEEEEECCCeEEEEECCCCeEEEEeCCC
Q 003445 183 CHE----GQIQCIDFHPH-----EFLLATGSADRTVKFWDLETFELIGSAGPE 226 (819)
Q Consensus 183 ~h~----~~I~sl~fspd-----g~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~ 226 (819)
.+. ..+........ +.-++.++.++.+...|..+++.+..+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 211 11100101111 223356667888999999999988887653
No 426
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.01 E-value=13 Score=41.74 Aligned_cols=150 Identities=16% Similarity=0.070 Sum_probs=91.1
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEcCCC--CCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-CC
Q 003445 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHR--SNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT-RG 145 (819)
Q Consensus 69 pdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~--~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~-~~ 145 (819)
-++. ++++..+|.|.-.|.+++..+.....-. ..+..-.+..+|+ ++.++.+|.++.+|.++++.+..+.... ..
T Consensus 67 ~dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 67 GDGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred eCCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence 3444 4455789999999999988664333221 2222222333554 7788889999999998999998887655 11
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCC---CeEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeEE
Q 003445 146 VNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEG---QIQCIDFHPHEFLLATGSA--DRTVKFWDLETFELI 220 (819)
Q Consensus 146 I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~---~I~sl~fspdg~~Lasgs~--Dg~I~iwDl~~~~~l 220 (819)
+..-.+-.++ .++.++.+|.+...|..+|+....+..... .+..-.. .....++.+.. ++.+.-+|..+|+..
T Consensus 145 ~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 145 YASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred EecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcEe
Confidence 1111222233 444455789999999999988777553221 1111111 12334555554 667777888888776
Q ss_pred EE
Q 003445 221 GS 222 (819)
Q Consensus 221 ~~ 222 (819)
..
T Consensus 223 w~ 224 (370)
T COG1520 223 WS 224 (370)
T ss_pred ee
Confidence 65
No 427
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.75 E-value=12 Score=40.33 Aligned_cols=271 Identities=10% Similarity=0.034 Sum_probs=144.5
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---e
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA---K 92 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~---~ 92 (819)
.+-+..+.++ +++++.+..+.-++|.|+.++.....+..-.-.=..-.|.-.|++..++..|.-+.+.|+.+. .
T Consensus 86 ~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 86 RDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 3455566665 346677777777999999776554433321111123334446788888876666778888653 3
Q ss_pred EEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC---eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 93 IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK---GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (819)
Q Consensus 93 ~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~---~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~I 169 (819)
....+.........++.+ |++-..+..|+-+.+.|+... ..+..+. ....+.++..+++--+++. .+--+.+
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vv--y~egvli 237 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVV--YDEGVLI 237 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEE--cccceEE
Confidence 334444444444566666 888888889999999998754 2333333 2336778777765444443 3445677
Q ss_pred EECCCCeEEEEEecC-CCCeEEE-EEeCCCCEEEEEECCCeEEEEECCCCe---EEEEeCCCCCCeeEEEEeCCCCEEEE
Q 003445 170 WDLTAGKLLHDFKCH-EGQIQCI-DFHPHEFLLATGSADRTVKFWDLETFE---LIGSAGPETSGVRCLTFNPDGRTLLC 244 (819)
Q Consensus 170 wDl~t~~~i~~~~~h-~~~I~sl-~fspdg~~Lasgs~Dg~I~iwDl~~~~---~l~~~~~~~~~I~sl~fspdg~~Las 244 (819)
-|..+.+....+... ...+.++ .|.-.+++......+.-+.+-|+.+.. ....+......-..+.. .|.++..
T Consensus 238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yi 315 (370)
T COG5276 238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYI 315 (370)
T ss_pred EecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeEe
Confidence 777765544433321 1122222 222235566666666666666765422 11112222212233332 2344444
Q ss_pred EECCCEEEEEecCCceeeeeeccccceeE-eEecCCCEEEEEEcCCeEEEEEe
Q 003445 245 GLHESLKVFSWEPIRCHDAVDVGWSRLSD-LNVHEGKLLGCSYNQSCVGVWVV 296 (819)
Q Consensus 245 gs~d~I~Vwd~~~~~~~~~~~~~~s~i~~-l~~~dg~lLa~~~~Dg~V~IW~l 296 (819)
+..+...+-+..+.+........-..... -.+-+.+.+.....++.+.||+.
T Consensus 316 adkn~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 316 ADKNTGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred ccCCceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 44444445554433332222111111111 11234457778888888888875
No 428
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.52 E-value=2.5 Score=47.57 Aligned_cols=141 Identities=15% Similarity=0.152 Sum_probs=79.4
Q ss_pred CCeEEEEEcCCCCEEEEEE-----------CCC-eEEEEECCC--Ce--EEEEEcCCCCCeEEEEEecCCCEEEEEECCC
Q 003445 60 SGIDSVSFDSSEVLVAAGA-----------ASG-TIKLWDLEE--AK--IVRTLTGHRSNCISVDFHPFGEFFASGSLDT 123 (819)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs-----------~DG-~I~IWDl~s--~~--~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg 123 (819)
.....|+|.++|+++++-. ..+ .|.+++-.. ++ ....+...-.....+++.+++ |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3567889999999877643 123 777776532 33 223443333456789999888 44444443
Q ss_pred cEEEE-ECCC-------CeEEE-EEec----CCCCeEEEEEcCCCCEEEEEECC-------------------CeEEEEE
Q 003445 124 NLKIW-DIRK-------KGCIH-TYKG----HTRGVNAIRFTPDGRWVVSGGED-------------------NTVKLWD 171 (819)
Q Consensus 124 ~I~Iw-Di~t-------~~~i~-~~~~----h~~~I~sl~fspdg~~L~sgs~D-------------------g~I~IwD 171 (819)
|..| |... .+.+. .+.. +......++|.|||.+.++-+.. |.|.-+|
T Consensus 92 -i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 92 -ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred -EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 5444 5432 11221 2222 13447789999999876654421 4455566
Q ss_pred CCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE
Q 003445 172 LTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS 204 (819)
Q Consensus 172 l~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs 204 (819)
..+++.. .+...-.....++|+|+|.++++-.
T Consensus 171 pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeEE-EEecCcCCCccceECCCCCEEEEcc
Confidence 5554432 2221223346788988888776643
No 429
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.50 E-value=0.55 Score=57.72 Aligned_cols=142 Identities=12% Similarity=0.120 Sum_probs=90.1
Q ss_pred CeEEEEEcCCCCEEEEE--ECCCeEEEEECCCCeEE-----EEEcC------CCCCeEEEEEecCCC-EEEEEECCCcEE
Q 003445 61 GIDSVSFDSSEVLVAAG--AASGTIKLWDLEEAKIV-----RTLTG------HRSNCISVDFHPFGE-FFASGSLDTNLK 126 (819)
Q Consensus 61 ~V~~l~fspdg~~Lasg--s~DG~I~IWDl~s~~~i-----~~l~~------h~~~I~sl~fsp~g~-~Lasgs~Dg~I~ 126 (819)
+|..+...+|+...++. +.+-.|..||+++-..- .-+.. ......++.|.|.-. ..++...|+.|.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45556666676554443 33347889998743211 11111 123456788888643 366677789888
Q ss_pred EEECCCCeE-EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec----CCCCeEEEEEeCCCCEEE
Q 003445 127 IWDIRKKGC-IHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC----HEGQIQCIDFHPHEFLLA 201 (819)
Q Consensus 127 IwDi~t~~~-i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~----h~~~I~sl~fspdg~~La 201 (819)
+..+..... +..+. .....++++|+|.|+.++.|...|++.-|... ++....+.+ ....|.+++|-....+++
T Consensus 182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 887654332 22222 45568999999999999999999999988754 333333322 246799999988766666
Q ss_pred EEE
Q 003445 202 TGS 204 (819)
Q Consensus 202 sgs 204 (819)
+-+
T Consensus 260 vy~ 262 (1405)
T KOG3630|consen 260 VYG 262 (1405)
T ss_pred Eec
Confidence 543
No 430
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.47 E-value=17 Score=41.39 Aligned_cols=209 Identities=11% Similarity=0.121 Sum_probs=99.7
Q ss_pred CceEEEec-CC-CCCeEEEEEc-----------CCCCEEEEEE-CCCeEEEEECCC----CeEEEEEcC---CC----CC
Q 003445 49 PNAILSLS-GH-TSGIDSVSFD-----------SSEVLVAAGA-ASGTIKLWDLEE----AKIVRTLTG---HR----SN 103 (819)
Q Consensus 49 ~~~i~~l~-~h-~~~V~~l~fs-----------pdg~~Lasgs-~DG~I~IWDl~s----~~~i~~l~~---h~----~~ 103 (819)
++.++.+. .+ .......-|+ .+.++|+..+ .++.|+|+|+.+ .++.+++.. +. ..
T Consensus 52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~ 131 (461)
T PF05694_consen 52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSR 131 (461)
T ss_dssp TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEE
T ss_pred ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCC
Confidence 45555553 22 2355555564 2455666666 689999999973 345555542 11 11
Q ss_pred eEEEEEecCCCEEEEE--EC----CCcEEEEECCCCeEEEEEecCC---CCeEEEEEcCCCCEEEEEEC-----------
Q 003445 104 CISVDFHPFGEFFASG--SL----DTNLKIWDIRKKGCIHTYKGHT---RGVNAIRFTPDGRWVVSGGE----------- 163 (819)
Q Consensus 104 I~sl~fsp~g~~Lasg--s~----Dg~I~IwDi~t~~~i~~~~~h~---~~I~sl~fspdg~~L~sgs~----------- 163 (819)
-..+..-|+|+.++++ .. -|.+.++|-++.+.+..+.... ..-..+-|.|..+.+++...
T Consensus 132 PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~ 211 (461)
T PF05694_consen 132 PHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFN 211 (461)
T ss_dssp EEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---
T ss_pred CceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCC
Confidence 2233445688887774 22 2468899988888877775422 33567788888888887643
Q ss_pred ---------CCeEEEEECCCCeEEEEEecCCC--CeEEEEEeCC--CCE-EEEEECCCeEEEEEC-CCCe----EEEEeC
Q 003445 164 ---------DNTVKLWDLTAGKLLHDFKCHEG--QIQCIDFHPH--EFL-LATGSADRTVKFWDL-ETFE----LIGSAG 224 (819)
Q Consensus 164 ---------Dg~I~IwDl~t~~~i~~~~~h~~--~I~sl~fspd--g~~-Lasgs~Dg~I~iwDl-~~~~----~l~~~~ 224 (819)
..+|.+||+.+.+.++++..... ....+.|..+ ..+ ++.+-...+|..|-- +.++ .+..+.
T Consensus 212 ~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip 291 (461)
T PF05694_consen 212 PEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIP 291 (461)
T ss_dssp TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE-
T ss_pred hhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECC
Confidence 35799999999999999885432 3456666554 333 222223445555433 4433 122221
Q ss_pred CC-----------------CCCeeEEEEeCCCCEEEEEECC--CEEEEEecC
Q 003445 225 PE-----------------TSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEP 257 (819)
Q Consensus 225 ~~-----------------~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~ 257 (819)
.. ..-|+.|.+|.|.++|.+++.. .++.||+..
T Consensus 292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 11 2347999999999999988654 599999864
No 431
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.12 E-value=15 Score=40.39 Aligned_cols=134 Identities=13% Similarity=0.168 Sum_probs=66.1
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCeE---EEEEcCCCCC--eEEEEEecCCCEEEEEEC-----CCcEEEEECCCCe
Q 003445 70 SEVLVAAGAAS-----GTIKLWDLEEAKI---VRTLTGHRSN--CISVDFHPFGEFFASGSL-----DTNLKIWDIRKKG 134 (819)
Q Consensus 70 dg~~Lasgs~D-----G~I~IWDl~s~~~---i~~l~~h~~~--I~sl~fsp~g~~Lasgs~-----Dg~I~IwDi~t~~ 134 (819)
++.+++.|+.+ ..+..||+.+.+. ...+..-... -.+++.. ++..++.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 55666777754 3577778776553 1222211111 1122222 4666666664 2358888987665
Q ss_pred EEEE--EecCCCCeEEEEEcCCCCEEEEEECCC----eEEEEECCCCeEEEEEecC---CCCe----EEEEEeCCCCEEE
Q 003445 135 CIHT--YKGHTRGVNAIRFTPDGRWVVSGGEDN----TVKLWDLTAGKLLHDFKCH---EGQI----QCIDFHPHEFLLA 201 (819)
Q Consensus 135 ~i~~--~~~h~~~I~sl~fspdg~~L~sgs~Dg----~I~IwDl~t~~~i~~~~~h---~~~I----~sl~fspdg~~La 201 (819)
.... +... ......+..-+++..+.|+.++ .+.+||..+.+-.. +... ..+. .+.....++.+++
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~p~~~~~~~~~~~~~~~iyv 228 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQK-VADPTTDSEPISLLGAASIKINESLLLC 228 (323)
T ss_pred eeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEE-CCCCCCCCCceeccceeEEEECCCEEEE
Confidence 4322 2111 1112222233567777777654 35688888765322 1110 0111 1111223567888
Q ss_pred EEECC
Q 003445 202 TGSAD 206 (819)
Q Consensus 202 sgs~D 206 (819)
.|+.+
T Consensus 229 ~GG~~ 233 (323)
T TIGR03548 229 IGGFN 233 (323)
T ss_pred ECCcC
Confidence 88766
No 432
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.66 E-value=4.7 Score=48.12 Aligned_cols=195 Identities=9% Similarity=0.137 Sum_probs=102.9
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE--E--cCCCCCeEEEEEecCCC
Q 003445 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT--L--TGHRSNCISVDFHPFGE 114 (819)
Q Consensus 39 g~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~--l--~~h~~~I~sl~fsp~g~ 114 (819)
..|.||++ +|+.+..+.-....+-.+.|+.+..+|+. ..+|++++|++-... +.. . ......|..+.|..+|
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v-~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~G- 139 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICV-QKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNG- 139 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEE-eccceEEEeecchhh-hcccccccccccCceeEEEEecCc-
Confidence 34777775 46665555444458889999988877655 789999999985332 222 1 1223345545554455
Q ss_pred EEEEEECCCcEEEEECCCCeEEEEEecC-CCCeEEEEEc--CCCC---EEEEEE-CCCeEEEEECCCC-eEEEEEecCCC
Q 003445 115 FFASGSLDTNLKIWDIRKKGCIHTYKGH-TRGVNAIRFT--PDGR---WVVSGG-EDNTVKLWDLTAG-KLLHDFKCHEG 186 (819)
Q Consensus 115 ~Lasgs~Dg~I~IwDi~t~~~i~~~~~h-~~~I~sl~fs--pdg~---~L~sgs-~Dg~I~IwDl~t~-~~i~~~~~h~~ 186 (819)
+++-..+|.+.+-.-.....++.++.- .....+.+|. +++. .++-.. ..+. .++-...+ .....+....+
T Consensus 140 -Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~-~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 140 -VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGL-HICQVEESRVQLHALSWPNS 217 (829)
T ss_pred -eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhh-cccceecccccccccCCCCc
Confidence 333344566555443222233333321 1111112221 2211 111110 0010 11111111 11122222246
Q ss_pred CeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC-CCCeeEEEEeCCC
Q 003445 187 QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE-TSGVRCLTFNPDG 239 (819)
Q Consensus 187 ~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~-~~~I~sl~fspdg 239 (819)
.+..+..+|+..+|+.-..+|.|.+-+.+..+.+..+... ..+...++|..+.
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 6788999999999999999999999998887776666522 2233466666544
No 433
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.65 E-value=1.4 Score=50.06 Aligned_cols=138 Identities=13% Similarity=0.134 Sum_probs=93.2
Q ss_pred EEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-------EEEEEECCCeEEEEECCC-CeEEEE--EecC-
Q 003445 116 FASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR-------WVVSGGEDNTVKLWDLTA-GKLLHD--FKCH- 184 (819)
Q Consensus 116 Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~-------~L~sgs~Dg~I~IwDl~t-~~~i~~--~~~h- 184 (819)
+..|+....++-.|++.|+.+..+..|..- -+.|.|+.+ .-+.|-.+..|.-.|.+. |..+.. ++..
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~ 560 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYK 560 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcc
Confidence 334556667888899999999999877764 577887432 234455666666667663 332222 2211
Q ss_pred -CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEec
Q 003445 185 -EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (819)
Q Consensus 185 -~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (819)
.....+..- ....++|+++..|.|++||--.......+.+.+..|..+..+.+|+++++.+...+-+.|..
T Consensus 561 tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 561 TKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred cccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 111222222 23459999999999999997554444456677788999999999999999988877776654
No 434
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.58 E-value=6.2 Score=48.25 Aligned_cols=93 Identities=15% Similarity=0.287 Sum_probs=55.7
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEECC-CCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003445 102 SNCISVDFHPFGEFFASGSLDTNLKIWDIR-KKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHD 180 (819)
Q Consensus 102 ~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~-t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~ 180 (819)
-.|..|.++|+|.+++..|..| |.|..+. .......+.+-...|.|-.+.-+.. ++.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~---------------------~~~ 142 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDER---------------------FFT 142 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechh---------------------hcc
Confidence 4688899999999999988766 4444442 2222222322222333322221111 110
Q ss_pred EecCCCCeEEEEEeCC---CCEEEEEECCCeEEEEECCCC
Q 003445 181 FKCHEGQIQCIDFHPH---EFLLATGSADRTVKFWDLETF 217 (819)
Q Consensus 181 ~~~h~~~I~sl~fspd---g~~Lasgs~Dg~I~iwDl~~~ 217 (819)
..+...|..+.|||. +..|++-..|+++++||+...
T Consensus 143 -~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 143 -SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred -CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 123456788899986 578888888999999998653
No 435
>PLN02153 epithiospecifier protein
Probab=92.46 E-value=20 Score=39.61 Aligned_cols=187 Identities=14% Similarity=0.182 Sum_probs=91.5
Q ss_pred CCcEEEEEeCC-------CeEEEEECCCCceEEEec-CC-CC----CeEEEEEcCCCCEEEEEECC-----CeEEEEECC
Q 003445 28 SSRVLVTGGED-------HKVNLWAIGKPNAILSLS-GH-TS----GIDSVSFDSSEVLVAAGAAS-----GTIKLWDLE 89 (819)
Q Consensus 28 ~~~~Latgs~D-------g~V~IWdl~~~~~i~~l~-~h-~~----~V~~l~fspdg~~Lasgs~D-----G~I~IWDl~ 89 (819)
++.+++.|+.+ ..+.+||+.+.+....-. +. .. ....+.+ ++++++.|+.+ ..+.+||+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 45677777753 257888887655432211 00 00 1122222 45677777653 357889988
Q ss_pred CCeEEE--EEcC---CCCC-eEEEEEecCCCEEEEEECC-----------CcEEEEECCCCeEEEEEec----CCCCeEE
Q 003445 90 EAKIVR--TLTG---HRSN-CISVDFHPFGEFFASGSLD-----------TNLKIWDIRKKGCIHTYKG----HTRGVNA 148 (819)
Q Consensus 90 s~~~i~--~l~~---h~~~-I~sl~fsp~g~~Lasgs~D-----------g~I~IwDi~t~~~i~~~~~----h~~~I~s 148 (819)
+.+... .+.. .... -.+++. -++++++.|+.+ ..|.+||..+.+....-.. ....-.+
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~ 188 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAG 188 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcce
Confidence 765432 1110 1111 112222 345667777653 2477889877654321110 0111112
Q ss_pred EEEcCCCCEEEEEECC-------------CeEEEEECCCCeEEEEEec---CCCCeEEEEEeCCCCEEEEEECC------
Q 003445 149 IRFTPDGRWVVSGGED-------------NTVKLWDLTAGKLLHDFKC---HEGQIQCIDFHPHEFLLATGSAD------ 206 (819)
Q Consensus 149 l~fspdg~~L~sgs~D-------------g~I~IwDl~t~~~i~~~~~---h~~~I~sl~fspdg~~Lasgs~D------ 206 (819)
++. -+++.++.|+.+ ..|.+||..+.+-...-.. ........+..-++++++.|+..
T Consensus 189 ~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 267 (341)
T PLN02153 189 FAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKG 267 (341)
T ss_pred EEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcccc
Confidence 222 246666655432 4588899887654332110 11111111222356778887752
Q ss_pred --------CeEEEEECCCCe
Q 003445 207 --------RTVKFWDLETFE 218 (819)
Q Consensus 207 --------g~I~iwDl~~~~ 218 (819)
..+..||..+.+
T Consensus 268 ~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 268 HLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred ccccccccccEEEEEcCccE
Confidence 257888887654
No 436
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.43 E-value=0.36 Score=37.33 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=30.2
Q ss_pred ccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce
Q 003445 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA 51 (819)
Q Consensus 14 ~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~ 51 (819)
.....|.+++|+| ...+||.|..+|.|.+|.+ +++.
T Consensus 9 ~l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 9 NLPSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcC
Confidence 3456799999999 6779999999999999998 4544
No 437
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.41 E-value=0.36 Score=37.34 Aligned_cols=35 Identities=26% Similarity=0.560 Sum_probs=30.5
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEE
Q 003445 185 EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI 220 (819)
Q Consensus 185 ~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l 220 (819)
...|.+++|+|...+||.|+.+|.|.+|.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 456999999999999999999999999998 55543
No 438
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.36 E-value=4.4 Score=48.45 Aligned_cols=112 Identities=17% Similarity=0.174 Sum_probs=75.3
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe-cCCCCeEEEEEc--CCCCEEEEEECCCeEEEEECC-----
Q 003445 102 SNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK-GHTRGVNAIRFT--PDGRWVVSGGEDNTVKLWDLT----- 173 (819)
Q Consensus 102 ~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~-~h~~~I~sl~fs--pdg~~L~sgs~Dg~I~IwDl~----- 173 (819)
....-+.-+.-++..++-+....+.|||.+.+.....-. ...+.|..+.|. |+|+.+++.+..+.|.+|--.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344445455555555555556689999999887544322 346789999986 589999999999999998532
Q ss_pred C----CeEEEEEe--cCC-CCeEEEEEeCCCCEEEEEECCCeEEEEECC
Q 003445 174 A----GKLLHDFK--CHE-GQIQCIDFHPHEFLLATGSADRTVKFWDLE 215 (819)
Q Consensus 174 t----~~~i~~~~--~h~-~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~ 215 (819)
. ...+..+. .+. .+|....|.++|.+++.. ++.+.|+|-.
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 1 12333332 333 578999999999766655 4678888743
No 439
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.14 E-value=25 Score=39.99 Aligned_cols=144 Identities=13% Similarity=0.064 Sum_probs=79.8
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeE--EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe-----
Q 003445 146 VNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL--LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE----- 218 (819)
Q Consensus 146 I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~--i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~----- 218 (819)
...+..+++|.+++.+.....++-||- |.. ...-......++.+.|.+++.+++++ .+|.+ +|....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccc
Confidence 344566778877666643333333442 222 11112234568999999999888776 45654 34444443
Q ss_pred EEEEeCC--CCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeeeeec---cccceeEeEecCCCEEEEEEcCCeEEE
Q 003445 219 LIGSAGP--ETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDV---GWSRLSDLNVHEGKLLGCSYNQSCVGV 293 (819)
Q Consensus 219 ~l~~~~~--~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~---~~s~i~~l~~~dg~lLa~~~~Dg~V~I 293 (819)
.+..... ....+..+.|.+++..+++|..+. .+...+.++....... -...++.+.+.+.....+.+.+|.|.-
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~-v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~ 395 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAGGSGI-LLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLR 395 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEECCCc-EEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEE
Confidence 2222222 224589999999998888885553 3444455554443321 123455666555444455556666654
Q ss_pred E
Q 003445 294 W 294 (819)
Q Consensus 294 W 294 (819)
|
T Consensus 396 ~ 396 (398)
T PLN00033 396 Y 396 (398)
T ss_pred e
Confidence 4
No 440
>PLN02193 nitrile-specifier protein
Probab=92.07 E-value=13 Score=43.27 Aligned_cols=188 Identities=12% Similarity=0.110 Sum_probs=92.9
Q ss_pred CCcEEEEEeCC-------CeEEEEECCCCceEEEecCC---CC--CeEEEEEcCCCCEEEEEECC-----CeEEEEECCC
Q 003445 28 SSRVLVTGGED-------HKVNLWAIGKPNAILSLSGH---TS--GIDSVSFDSSEVLVAAGAAS-----GTIKLWDLEE 90 (819)
Q Consensus 28 ~~~~Latgs~D-------g~V~IWdl~~~~~i~~l~~h---~~--~V~~l~fspdg~~Lasgs~D-----G~I~IWDl~s 90 (819)
++.+++.|+.+ ..+.+||+.+.+... +... .. ........-++.+++.|+.+ ..+.+||+.+
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t 253 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT 253 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC
Confidence 45566667643 247778877655432 2110 01 11111122255666777655 4688899887
Q ss_pred CeEEEEEcC----CCCCeEEEEEecCCCEEEEEECCC-----cEEEEECCCCeEEEEEe-----cCCCCeEEEEEcCCCC
Q 003445 91 AKIVRTLTG----HRSNCISVDFHPFGEFFASGSLDT-----NLKIWDIRKKGCIHTYK-----GHTRGVNAIRFTPDGR 156 (819)
Q Consensus 91 ~~~i~~l~~----h~~~I~sl~fsp~g~~Lasgs~Dg-----~I~IwDi~t~~~i~~~~-----~h~~~I~sl~fspdg~ 156 (819)
.+....-.. ....-.+++. -++++++.|+.++ .+..||+.+.+....-. ...... .++. -+++
T Consensus 254 ~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~-~~~~-~~gk 330 (470)
T PLN02193 254 NEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA-GLEV-VQGK 330 (470)
T ss_pred CEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc-EEEE-ECCc
Confidence 654332111 1111112222 2456677776543 46788887765432111 011111 2222 2567
Q ss_pred EEEEEECC----CeEEEEECCCCeEEEEEec---CCCCeEEEEEeCCCCEEEEEECC--------------CeEEEEECC
Q 003445 157 WVVSGGED----NTVKLWDLTAGKLLHDFKC---HEGQIQCIDFHPHEFLLATGSAD--------------RTVKFWDLE 215 (819)
Q Consensus 157 ~L~sgs~D----g~I~IwDl~t~~~i~~~~~---h~~~I~sl~fspdg~~Lasgs~D--------------g~I~iwDl~ 215 (819)
.++.++.+ ..+.+||+.+.+....-.. ........+..-++++++.|+.+ ..+.+||+.
T Consensus 331 iyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~ 410 (470)
T PLN02193 331 VWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE 410 (470)
T ss_pred EEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcC
Confidence 77777755 4589999987764332111 11111111222356777777753 247788887
Q ss_pred CCeE
Q 003445 216 TFEL 219 (819)
Q Consensus 216 ~~~~ 219 (819)
+.+-
T Consensus 411 t~~W 414 (470)
T PLN02193 411 TLQW 414 (470)
T ss_pred cCEE
Confidence 6543
No 441
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.00 E-value=26 Score=39.87 Aligned_cols=142 Identities=13% Similarity=0.138 Sum_probs=81.9
Q ss_pred eEEEEEecCCCEEEEEECCCcEE-EEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----E
Q 003445 104 CISVDFHPFGEFFASGSLDTNLK-IWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK-----L 177 (819)
Q Consensus 104 I~sl~fsp~g~~Lasgs~Dg~I~-IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~-----~ 177 (819)
...+...+++.+++.+.. |.+. -||--..-....-......+..+.|.+++.+++++ .+|.+.. ....++ .
T Consensus 241 f~~v~~~~dG~~~~vg~~-G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSR-GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECC-ccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccc
Confidence 344556677777776654 4433 34432110111112234568899999998877665 5666443 333443 1
Q ss_pred EEEEec--CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeC---CCCCCeeEEEEeCCCCEEEEEECCCE
Q 003445 178 LHDFKC--HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG---PETSGVRCLTFNPDGRTLLCGLHESL 250 (819)
Q Consensus 178 i~~~~~--h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~---~~~~~I~sl~fspdg~~Lasgs~d~I 250 (819)
...... ....+..+.|.+++..+++| ..|.+... ...|+.-.... .-...++.+.|.++++.+++|.++.|
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~i 393 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVL 393 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEE
Confidence 222221 12358899999888776666 56766554 34454433322 23456889999888888888866643
No 442
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.83 E-value=2 Score=48.84 Aligned_cols=143 Identities=15% Similarity=0.205 Sum_probs=93.6
Q ss_pred CCCCEEE-EEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCC-------EEEEEECCCcEEEEECCCCe-EEEE-
Q 003445 69 SSEVLVA-AGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE-------FFASGSLDTNLKIWDIRKKG-CIHT- 138 (819)
Q Consensus 69 pdg~~La-sgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~-------~Lasgs~Dg~I~IwDi~t~~-~i~~- 138 (819)
.+..+|+ .|+.-..++-.|++.|+.+..+..|... -+.|.|+.+ .-++|-.+..|.-.|.+-.. .+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 3444443 4555678888899999999999988775 577888542 23344456667667766332 2221
Q ss_pred -Eec--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECC
Q 003445 139 -YKG--HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE 215 (819)
Q Consensus 139 -~~~--h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~ 215 (819)
.+. ......+..-. ...++++|+..|.|++||.-..+....+.+....|..+..+.+|.++++.+ ...+.+-|+.
T Consensus 555 esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 555 ESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred eehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 111 11223333333 345899999999999999654444444556677899999999999888776 4567777764
No 443
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.82 E-value=22 Score=38.60 Aligned_cols=163 Identities=18% Similarity=0.289 Sum_probs=94.8
Q ss_pred eEEEEECCCCeEEEEEcCC------CCCeEEEEEecCC-----CEEEEE-ECCCcEEEEECCCCeEEEEEecC-------
Q 003445 82 TIKLWDLEEAKIVRTLTGH------RSNCISVDFHPFG-----EFFASG-SLDTNLKIWDIRKKGCIHTYKGH------- 142 (819)
Q Consensus 82 ~I~IWDl~s~~~i~~l~~h------~~~I~sl~fsp~g-----~~Lasg-s~Dg~I~IwDi~t~~~i~~~~~h------- 142 (819)
+|.+||+.+++.++++.-. .+.+..+.+.... .++..+ +..+.|.++|+.+++..+....+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 7889999999988877532 3456777776522 233333 33468999999988765544321
Q ss_pred ------------CCCeEEEEEcC---CCCEEEEEECCCeEEEEECCC-----C---------eEEEEEecCCCCeEEEEE
Q 003445 143 ------------TRGVNAIRFTP---DGRWVVSGGEDNTVKLWDLTA-----G---------KLLHDFKCHEGQIQCIDF 193 (819)
Q Consensus 143 ------------~~~I~sl~fsp---dg~~L~sgs~Dg~I~IwDl~t-----~---------~~i~~~~~h~~~I~sl~f 193 (819)
...+..++.+| +|++|+-+...+. ++|-+.+ . +.+..+-...+....+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 22355666655 6666766654432 2332211 1 112222111245677889
Q ss_pred eCCCCEEEEEECCCeEEEEECCC------CeEEEEeCCCCCCeeEEEEeC--CCCEEEEE
Q 003445 194 HPHEFLLATGSADRTVKFWDLET------FELIGSAGPETSGVRCLTFNP--DGRTLLCG 245 (819)
Q Consensus 194 spdg~~Lasgs~Dg~I~iwDl~~------~~~l~~~~~~~~~I~sl~fsp--dg~~Lasg 245 (819)
+++|.++++--..+.|..|+..+ .+.+..-...-..+..+.+.+ +|.+.+.+
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 99999999999999999999986 223332222246788999988 66655544
No 444
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=91.78 E-value=24 Score=39.01 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=27.1
Q ss_pred CCCEEEEEECC-----------CcEEEEECCCCeEEEEEecCCCCeE--EEEEcCCCCEEEEEECC
Q 003445 112 FGEFFASGSLD-----------TNLKIWDIRKKGCIHTYKGHTRGVN--AIRFTPDGRWVVSGGED 164 (819)
Q Consensus 112 ~g~~Lasgs~D-----------g~I~IwDi~t~~~i~~~~~h~~~I~--sl~fspdg~~L~sgs~D 164 (819)
++...+.|+.+ ..+..||..+......-........ +.+..-+++..+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56677777653 2477888877654332111111111 11112367777777754
No 445
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=91.59 E-value=22 Score=40.00 Aligned_cols=95 Identities=12% Similarity=0.072 Sum_probs=42.8
Q ss_pred CCcEEEEEeC-CCeEEEEECCCCc-eEEEecC-C-CCCeEEEEEcCCCCEEEEEECC-----------CeEEEEECCCCe
Q 003445 28 SSRVLVTGGE-DHKVNLWAIGKPN-AILSLSG-H-TSGIDSVSFDSSEVLVAAGAAS-----------GTIKLWDLEEAK 92 (819)
Q Consensus 28 ~~~~Latgs~-Dg~V~IWdl~~~~-~i~~l~~-h-~~~V~~l~fspdg~~Lasgs~D-----------G~I~IWDl~s~~ 92 (819)
++.+++.|+. +..+.++|+.... .-..+.. . ..........-++.+.+.|+.+ ..+..||..+.+
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~ 117 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS 117 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence 4455554443 4557777875321 1112221 1 1111111122356677777653 247788887765
Q ss_pred EEEEEcCCCCCe--EEEEEecCCCEEEEEECC
Q 003445 93 IVRTLTGHRSNC--ISVDFHPFGEFFASGSLD 122 (819)
Q Consensus 93 ~i~~l~~h~~~I--~sl~fsp~g~~Lasgs~D 122 (819)
....-....... .+....-++.+++.|+.+
T Consensus 118 W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 118 WQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred EEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 433211111111 111221357777777754
No 446
>PLN02153 epithiospecifier protein
Probab=91.14 E-value=28 Score=38.51 Aligned_cols=133 Identities=14% Similarity=0.195 Sum_probs=64.7
Q ss_pred eEEEEECCCCeEEEEEc-C--CCC---CeEEEEEecCCCEEEEEECC-----CcEEEEECCCCeEEEE--Ee----cCCC
Q 003445 82 TIKLWDLEEAKIVRTLT-G--HRS---NCISVDFHPFGEFFASGSLD-----TNLKIWDIRKKGCIHT--YK----GHTR 144 (819)
Q Consensus 82 ~I~IWDl~s~~~i~~l~-~--h~~---~I~sl~fsp~g~~Lasgs~D-----g~I~IwDi~t~~~i~~--~~----~h~~ 144 (819)
.+.+||+.+.+....-. + ... ....+.+ ++.+++.|+.+ ..+.+||+.+.+.... +. ....
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R 128 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence 57788887765432111 0 011 1122222 45667777653 3578899887654321 11 0011
Q ss_pred CeEEEEEcCCCCEEEEEECC-----------CeEEEEECCCCeEEEEEecC----CCCe-EEEEEeCCCCEEEEEECC--
Q 003445 145 GVNAIRFTPDGRWVVSGGED-----------NTVKLWDLTAGKLLHDFKCH----EGQI-QCIDFHPHEFLLATGSAD-- 206 (819)
Q Consensus 145 ~I~sl~fspdg~~L~sgs~D-----------g~I~IwDl~t~~~i~~~~~h----~~~I-~sl~fspdg~~Lasgs~D-- 206 (819)
.-.+++. -+++.++.|+.+ ..|.+||..+.+-.. +... .... .+++. -++++++.|+.+
T Consensus 129 ~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~ 205 (341)
T PLN02153 129 TFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATS 205 (341)
T ss_pred eeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccc
Confidence 1122222 356667777653 247788888765332 1111 1110 12222 356666665432
Q ss_pred -----------CeEEEEECCCCeE
Q 003445 207 -----------RTVKFWDLETFEL 219 (819)
Q Consensus 207 -----------g~I~iwDl~~~~~ 219 (819)
..+.+||..+.+-
T Consensus 206 ~~~gG~~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 206 ILPGGKSDYESNAVQFFDPASGKW 229 (341)
T ss_pred cccCCccceecCceEEEEcCCCcE
Confidence 4588899887553
No 447
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.94 E-value=9.7 Score=38.97 Aligned_cols=171 Identities=12% Similarity=0.139 Sum_probs=100.4
Q ss_pred CCcEEEEEeC--CCeEEEEECCCCceEEEecCCCCCeEE--EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCC
Q 003445 28 SSRVLVTGGE--DHKVNLWAIGKPNAILSLSGHTSGIDS--VSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSN 103 (819)
Q Consensus 28 ~~~~Latgs~--Dg~V~IWdl~~~~~i~~l~~h~~~V~~--l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~ 103 (819)
++.++.+.+. ...|++||+.+++.+..-.-....+.. +.-..|.-+.++ -.+|.-..+|..+-+.+..+. ..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LT-w~egvaf~~d~~t~~~lg~~~-y~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLT-WKEGVAFKYDADTLEELGRFS-YEGE 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEE-eccceeEEEChHHhhhhcccc-cCCc
Confidence 5566666554 346999999999888765432111111 111112223333 468888999999888877765 3344
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE----ecC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 003445 104 CISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY----KGH-TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLL 178 (819)
Q Consensus 104 I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~----~~h-~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i 178 (819)
-+.++. ++..|+.++...+++.-|..+.....+. .+. -..++-+.|- ||...+-.-.+..|...|..+|+.+
T Consensus 133 GWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~ 209 (262)
T COG3823 133 GWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVV 209 (262)
T ss_pred ceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEE
Confidence 455544 4666777766677777777654433332 221 1223344444 5655555555666677777777766
Q ss_pred EEEe------------cCCCCeEEEEEeCCC-CEEEEE
Q 003445 179 HDFK------------CHEGQIQCIDFHPHE-FLLATG 203 (819)
Q Consensus 179 ~~~~------------~h~~~I~sl~fspdg-~~Lasg 203 (819)
..+. .+..-.+.+++.|++ +++++|
T Consensus 210 ~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 210 AWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 6543 233457889999986 555655
No 448
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.92 E-value=8.8 Score=45.93 Aligned_cols=179 Identities=13% Similarity=0.111 Sum_probs=89.2
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE----ecCCCCeEEEEEcCCC
Q 003445 80 SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY----KGHTRGVNAIRFTPDG 155 (819)
Q Consensus 80 DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~----~~h~~~I~sl~fspdg 155 (819)
--.|+||++ +|..+..+......+-.+.|+.+. .|++...+|++++|++-.. .+..+ ......|..+.|..+|
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCc
Confidence 345788885 466666655545578899999654 5666678999999998532 22221 2223345555555555
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEec---CCCCeEEEEEeCCCC---EEEEEE-CCCeEEEEECCCC-eEEEEeCCCC
Q 003445 156 RWVVSGGEDNTVKLWDLTAGKLLHDFKC---HEGQIQCIDFHPHEF---LLATGS-ADRTVKFWDLETF-ELIGSAGPET 227 (819)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~~i~~~~~---h~~~I~sl~fspdg~---~Lasgs-~Dg~I~iwDl~~~-~~l~~~~~~~ 227 (819)
-.+ -..+|.+.+..-.....+..+.. ..-.-.|-...+++. .++--. ..+ ..++-.... .....+....
T Consensus 140 Vav--lt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~ 216 (829)
T KOG2280|consen 140 VAV--LTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPN 216 (829)
T ss_pred eEE--EecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCC
Confidence 333 33455554443222222222221 111112222222211 111111 011 111111111 1122233334
Q ss_pred CCeeEEEEeCCCCEEEEEEC-CCEEEEEecCCceeeee
Q 003445 228 SGVRCLTFNPDGRTLLCGLH-ESLKVFSWEPIRCHDAV 264 (819)
Q Consensus 228 ~~I~sl~fspdg~~Lasgs~-d~I~Vwd~~~~~~~~~~ 264 (819)
+.+..+..||++++|+--.. |.+.+-+.+..++.-.+
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~ 254 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEF 254 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhcc
Confidence 56788999999999985544 45666676666655443
No 449
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.90 E-value=11 Score=46.56 Aligned_cols=250 Identities=15% Similarity=0.048 Sum_probs=119.9
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEE---E------ec--CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003445 28 SSRVLVTGGEDHKVNLWAIGKPNAIL---S------LS--GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96 (819)
Q Consensus 28 ~~~~Latgs~Dg~V~IWdl~~~~~i~---~------l~--~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~ 96 (819)
-++.+..|+.+|.+.+|.+....... . +. -+..+|..+...+...++++- .|+.|.++++.+-+....
T Consensus 25 ~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~~~~~~~ 103 (877)
T KOG2063|consen 25 YGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLIL-SDSQIAVHKLPELEPVPS 103 (877)
T ss_pred hCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhee-cCCcceeeecCccccccc
Confidence 34578999999999999885432111 1 11 135677777776666655554 477888888876554221
Q ss_pred EcCCCCCeEEEEE--ec-C-C--CEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003445 97 LTGHRSNCISVDF--HP-F-G--EFFASGSL--DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVK 168 (819)
Q Consensus 97 l~~h~~~I~sl~f--sp-~-g--~~Lasgs~--Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~ 168 (819)
.. +-..+...++ .+ . + .+.++.+. -.....|+-+.+-.+..--+......+++|. |..+.+|-.+....
T Consensus 104 ~~-~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~c~~~~~~~~i 180 (877)
T KOG2063|consen 104 GT-RLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAWC--GHIVCLGLKKSYYI 180 (877)
T ss_pred cc-ccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhccc--ceeEEEeecceeEE
Confidence 11 1111111111 11 1 1 22333321 1223345544443333322223333444443 55555555444444
Q ss_pred EEECCCCeEEEEEe-cC--CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEE-EEeCCCCCCeeEEEEeCCCCEEEE
Q 003445 169 LWDLTAGKLLHDFK-CH--EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI-GSAGPETSGVRCLTFNPDGRTLLC 244 (819)
Q Consensus 169 IwDl~t~~~i~~~~-~h--~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l-~~~~~~~~~I~sl~fspdg~~Las 244 (819)
+|.-.++.....+. +. ...-..|.-..++..++.| .|+...+-|.. |... ...-.-......+.+ +..|+++
T Consensus 181 i~~~~~~~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~-kd~~gv~vd~~-G~~~~~~~l~ws~~P~~v~~--~~PYlIa 256 (877)
T KOG2063|consen 181 INNTSKGVGPNLFPSSMDNESRKPLIKSLSDQSELLLG-KDNIGVVVDLN-GIIAQRGTLVWSEVPLSVVV--ESPYLIA 256 (877)
T ss_pred EecCCCccccceeeeccccccCCCeEEEecCCceEEEc-cCceEEEEecC-CcccCCCceEecccchhhcc--cCceEEE
Confidence 44444442111111 10 1111234444566566666 56666676744 3321 100000111122222 4568887
Q ss_pred EECCCEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEE
Q 003445 245 GLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSY 286 (819)
Q Consensus 245 gs~d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~ 286 (819)
-.+..+.||+..+..+.+.+. ..+....+...++.++.+..
T Consensus 257 ~~~~~veI~s~~~~qlvQSI~-~~~~~~~l~s~~~~i~~~~~ 297 (877)
T KOG2063|consen 257 LLDRSVEIRSKLDGQLVQSIT-PLSNGRSLLSAHNGIIFVAS 297 (877)
T ss_pred EccccEEEEeccCHHHhhccc-cccccceeeecCCcEEEEEe
Confidence 777799999999987776663 33333344433334444443
No 450
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=90.17 E-value=0.5 Score=52.76 Aligned_cols=176 Identities=14% Similarity=0.124 Sum_probs=108.7
Q ss_pred EEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEE-EE-ecCCC----CeE-EEEEcCCCCEEEEEECCCeE
Q 003445 95 RTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH-TY-KGHTR----GVN-AIRFTPDGRWVVSGGEDNTV 167 (819)
Q Consensus 95 ~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~-~~-~~h~~----~I~-sl~fspdg~~L~sgs~Dg~I 167 (819)
..+......+..+-..|+|+.+..-+. ..+.++++.+..... .+ ....+ .|+ .+..-..|.-++.++.||-|
T Consensus 214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~v 292 (733)
T COG4590 214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLV 292 (733)
T ss_pred hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCce
Confidence 334444566777888999998777654 678888886543211 11 11011 122 12223356678888999988
Q ss_pred EEE-ECCCCe-----EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCE
Q 003445 168 KLW-DLTAGK-----LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRT 241 (819)
Q Consensus 168 ~Iw-Dl~t~~-----~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~ 241 (819)
.-| |.+.+. .+..++-....+..+.-..+.+-+++-+.+|++..+.....+.+-.. ..-..+.-++++|.+.+
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~-~~~~~~~~~~~Sp~~~~ 371 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE-RAYQAPQLVAMSPNQAY 371 (733)
T ss_pred eeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh-hhhcCcceeeeCcccch
Confidence 877 555432 22333333344444443334567778888888888776554443322 22235788999999999
Q ss_pred EEEEECCCEEEEEecCCceeeeeecccccee
Q 003445 242 LLCGLHESLKVFSWEPIRCHDAVDVGWSRLS 272 (819)
Q Consensus 242 Lasgs~d~I~Vwd~~~~~~~~~~~~~~s~i~ 272 (819)
|++-..++++++.++.....-.+..-|.++.
T Consensus 372 Ll~e~~gki~~~~l~Nr~PeiswsaLWqkvW 402 (733)
T COG4590 372 LLSEDQGKIRLAQLENRNPEISWSALWQKVW 402 (733)
T ss_pred heeecCCceEEEEecCCCCCccHHHhhhhhh
Confidence 9998888999999988766555555555443
No 451
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.94 E-value=16 Score=37.41 Aligned_cols=172 Identities=10% Similarity=0.090 Sum_probs=97.6
Q ss_pred CCCEEEEEEC--CCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEE-EEECCCcEEEEECCCCeEEEEEecCCCCe
Q 003445 70 SEVLVAAGAA--SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFA-SGSLDTNLKIWDIRKKGCIHTYKGHTRGV 146 (819)
Q Consensus 70 dg~~Lasgs~--DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~La-sgs~Dg~I~IwDi~t~~~i~~~~~h~~~I 146 (819)
++.++.+.+. ...|++||+.+++.+....-....+..=-...-++++. ..-.+|.-..||.++.+++..+. ..+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 4566666554 34799999999988766542222222111111234333 23457888999999988887765 33444
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE----Eec-CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003445 147 NAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHD----FKC-HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIG 221 (819)
Q Consensus 147 ~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~----~~~-h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~ 221 (819)
+.++. |+..|+.+....++..-|..+-..... +.+ .-..++.+.|- +|.+.|-.-.+..|...|.++|+.+.
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 55554 455677766666677777654332222 221 11223444443 45555555455556666677776655
Q ss_pred EeC------------CCCCCeeEEEEeCCC-CEEEEE
Q 003445 222 SAG------------PETSGVRCLTFNPDG-RTLLCG 245 (819)
Q Consensus 222 ~~~------------~~~~~I~sl~fspdg-~~Lasg 245 (819)
.+. .+..-.+.+++.|++ +++++|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 432 233456889999987 455555
No 452
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.91 E-value=38 Score=38.09 Aligned_cols=53 Identities=13% Similarity=0.283 Sum_probs=26.8
Q ss_pred CCCEEEEEECC-----------CcEEEEECCCCeEEEEEecCCCCe--EEEEEcCCCCEEEEEECC
Q 003445 112 FGEFFASGSLD-----------TNLKIWDIRKKGCIHTYKGHTRGV--NAIRFTPDGRWVVSGGED 164 (819)
Q Consensus 112 ~g~~Lasgs~D-----------g~I~IwDi~t~~~i~~~~~h~~~I--~sl~fspdg~~L~sgs~D 164 (819)
++.+++.|+.+ ..+..||..+.+....-....... .+....-+++..+.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 46667777653 247788887765433211101111 122221367777777754
No 453
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=89.57 E-value=12 Score=43.62 Aligned_cols=150 Identities=17% Similarity=0.144 Sum_probs=80.7
Q ss_pred EEEEE---eCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCC---e
Q 003445 31 VLVTG---GEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSN---C 104 (819)
Q Consensus 31 ~Latg---s~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~---I 104 (819)
+++.+ ...+...++|. +|.....+.........+.+.++|.+++... +.+..+|+. |+.+..+...... -
T Consensus 117 ~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~H 192 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFH 192 (477)
T ss_dssp EEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-
T ss_pred EEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccc
Confidence 44444 34566777774 4666666553222222267788998887654 889999985 6655554422211 2
Q ss_pred EEEEEecCCCEEEEEEC-------------CCcEEEEECCCCeEEEEEec--CC-------------------------C
Q 003445 105 ISVDFHPFGEFFASGSL-------------DTNLKIWDIRKKGCIHTYKG--HT-------------------------R 144 (819)
Q Consensus 105 ~sl~fsp~g~~Lasgs~-------------Dg~I~IwDi~t~~~i~~~~~--h~-------------------------~ 144 (819)
..+.+.|+|++|+.+.. .-.|..+| .+|+.+..+.. |- -
T Consensus 193 HD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~ 271 (477)
T PF05935_consen 193 HDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWL 271 (477)
T ss_dssp S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS-
T ss_pred cccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCcc
Confidence 35678899999888772 22366777 77877766531 10 1
Q ss_pred CeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEecCC
Q 003445 145 GVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE 185 (819)
Q Consensus 145 ~I~sl~fsp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~ 185 (819)
.++++.+.+ ++.+|+++-.-..|...|.++++....+-.+.
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 378899988 55555555445589999988888877776543
No 454
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=89.10 E-value=18 Score=42.24 Aligned_cols=151 Identities=19% Similarity=0.233 Sum_probs=81.9
Q ss_pred EEEEE---ECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCC---e
Q 003445 73 LVAAG---AASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRG---V 146 (819)
Q Consensus 73 ~Lasg---s~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~---I 146 (819)
+++.. ...+...++|. .|.....+.........+.+.++|.+++... ..++.+|+. |+.+..+...... =
T Consensus 117 ~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~H 192 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFH 192 (477)
T ss_dssp EEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-
T ss_pred EEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccc
Confidence 44444 24566667774 3555554442222111166778888777655 889999985 5566555432221 3
Q ss_pred EEEEEcCCCCEEEEEEC-------------CCeEEEEECCCCeEEEEEec--CC-------------------------C
Q 003445 147 NAIRFTPDGRWVVSGGE-------------DNTVKLWDLTAGKLLHDFKC--HE-------------------------G 186 (819)
Q Consensus 147 ~sl~fspdg~~L~sgs~-------------Dg~I~IwDl~t~~~i~~~~~--h~-------------------------~ 186 (819)
..+.+.|+|++|+.+.. .-.|..+| .+|+.+..+.. |- -
T Consensus 193 HD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~ 271 (477)
T PF05935_consen 193 HDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWL 271 (477)
T ss_dssp S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS-
T ss_pred cccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCcc
Confidence 56778899999998872 23467777 78887777542 10 1
Q ss_pred CeEEEEEeC-CCCEEEEEECCCeEEEEECCCCeEEEEeCCCCC
Q 003445 187 QIQCIDFHP-HEFLLATGSADRTVKFWDLETFELIGSAGPETS 228 (819)
Q Consensus 187 ~I~sl~fsp-dg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~ 228 (819)
.++++.+.+ ++.+|+++-.-..|...|.++++....+..+..
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~ 314 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGG 314 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCC
Confidence 278999999 455555554455899999999998888876643
No 455
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=88.80 E-value=39 Score=36.67 Aligned_cols=164 Identities=13% Similarity=0.198 Sum_probs=92.3
Q ss_pred CeEEEEECCCCceEEEecC------CCCCeEEEEEcCCC-----CEEEEE-ECCCeEEEEECCCCeEEEEEcCCCC----
Q 003445 39 HKVNLWAIGKPNAILSLSG------HTSGIDSVSFDSSE-----VLVAAG-AASGTIKLWDLEEAKIVRTLTGHRS---- 102 (819)
Q Consensus 39 g~V~IWdl~~~~~i~~l~~------h~~~V~~l~fspdg-----~~Lasg-s~DG~I~IWDl~s~~~i~~l~~h~~---- 102 (819)
-+|.+||+.+++.++.+.- ..+.+..+.+.... .+++.. +..+-|.++|+.+++..+.+..+..
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 3799999999998887652 24567888886522 244443 3346899999999988777654221
Q ss_pred ---------------CeEEEEEec---CCCEEEEEECCCcEEEEECCC-----C---------eEEEEEecCCCCeEEEE
Q 003445 103 ---------------NCISVDFHP---FGEFFASGSLDTNLKIWDIRK-----K---------GCIHTYKGHTRGVNAIR 150 (819)
Q Consensus 103 ---------------~I~sl~fsp---~g~~Lasgs~Dg~I~IwDi~t-----~---------~~i~~~~~h~~~I~sl~ 150 (819)
.+..++.+| +++.|......+ -++|-+.+ . ..+..+.........++
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~ 192 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA 192 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence 234444443 344444444322 12222211 0 01122211124566788
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCC----eEEEEEecC--CCCeEEEEEeC--CCCEEEEE
Q 003445 151 FTPDGRWVVSGGEDNTVKLWDLTAG----KLLHDFKCH--EGQIQCIDFHP--HEFLLATG 203 (819)
Q Consensus 151 fspdg~~L~sgs~Dg~I~IwDl~t~----~~i~~~~~h--~~~I~sl~fsp--dg~~Lasg 203 (819)
++++|..+++--..+.|..||..+. +........ -..+..+.+.+ +|.+.+..
T Consensus 193 ~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 193 IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 9999998888889999999998861 211111211 24578888888 66554444
No 456
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.71 E-value=26 Score=38.76 Aligned_cols=143 Identities=19% Similarity=0.305 Sum_probs=87.0
Q ss_pred CCCeEEEEEecCCCEEEEEECCCc------EEEEECCCC----eEEE-----EEecCCC--------CeEEEEEcCCCCE
Q 003445 101 RSNCISVDFHPFGEFFASGSLDTN------LKIWDIRKK----GCIH-----TYKGHTR--------GVNAIRFTPDGRW 157 (819)
Q Consensus 101 ~~~I~sl~fsp~g~~Lasgs~Dg~------I~IwDi~t~----~~i~-----~~~~h~~--------~I~sl~fspdg~~ 157 (819)
-+.+..+.+.+++..+++.+.+|. ++.+++... ..+. .+....+ ...+|++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356788899876667777778887 666665531 1111 1111111 3457888778887
Q ss_pred EEEEECC------CeEEEEECCCCeEEEEEe---------------cCCCCeEEEEEeCCCCEEEEEECC-----C--e-
Q 003445 158 VVSGGED------NTVKLWDLTAGKLLHDFK---------------CHEGQIQCIDFHPHEFLLATGSAD-----R--T- 208 (819)
Q Consensus 158 L~sgs~D------g~I~IwDl~t~~~i~~~~---------------~h~~~I~sl~fspdg~~Lasgs~D-----g--~- 208 (819)
+++.-.+ ..|+.+|.. |+.+..+. ..+...-+|+++|+|..|+++.+. + .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7776666 788889876 66554441 123457899999999977665432 2 1
Q ss_pred ------EEE--EECCC-CeE----EEEeCC-----CCCCeeEEEEeCCCCEEEE
Q 003445 209 ------VKF--WDLET-FEL----IGSAGP-----ETSGVRCLTFNPDGRTLLC 244 (819)
Q Consensus 209 ------I~i--wDl~~-~~~----l~~~~~-----~~~~I~sl~fspdg~~Las 244 (819)
+++ ||..+ ++. ...+.. ....|..+.+-+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 344 45443 212 222232 3566788888888887664
No 457
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.67 E-value=19 Score=39.44 Aligned_cols=106 Identities=14% Similarity=0.210 Sum_probs=54.2
Q ss_pred CCcEEEEEeCC-----CeEEEEECCCCce---EEEecCCCCCe--EEEEEcCCCCEEEEEEC-----CCeEEEEECCCCe
Q 003445 28 SSRVLVTGGED-----HKVNLWAIGKPNA---ILSLSGHTSGI--DSVSFDSSEVLVAAGAA-----SGTIKLWDLEEAK 92 (819)
Q Consensus 28 ~~~~Latgs~D-----g~V~IWdl~~~~~---i~~l~~h~~~V--~~l~fspdg~~Lasgs~-----DG~I~IWDl~s~~ 92 (819)
++.+++.|+.+ ..+..||+.+.+. ...+..-..+. .+++. -++++.+.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45567777654 3566677765553 12222111111 12222 24666666664 2468888988765
Q ss_pred EEEE--EcCCCCCeEEEEEecCCCEEEEEECCC----cEEEEECCCCeE
Q 003445 93 IVRT--LTGHRSNCISVDFHPFGEFFASGSLDT----NLKIWDIRKKGC 135 (819)
Q Consensus 93 ~i~~--l~~h~~~I~sl~fsp~g~~Lasgs~Dg----~I~IwDi~t~~~ 135 (819)
.... +... ......+...++++++.|+.++ .+..||+.+.+.
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 4322 2211 1112222233567777777654 356888887654
No 458
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=88.59 E-value=35 Score=39.96 Aligned_cols=235 Identities=17% Similarity=0.113 Sum_probs=119.8
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHT-SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI 93 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~-~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~ 93 (819)
-...|..+.+... + .+.+|+.|| +..||..+++.+..-.... ..|..+..+-.+++ ..|+.+| |.+.+.+..+.
T Consensus 163 ~d~~V~aLv~D~~-g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~L-WVGTdqG-v~~~e~~G~~~ 237 (671)
T COG3292 163 KDTPVVALVFDAN-G-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRL-WVGTDQG-VYLQEAEGWRA 237 (671)
T ss_pred cCccceeeeeecc-C-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcE-EEEeccc-eEEEchhhccc
Confidence 3567888888763 3 477888888 7778877777766544333 56777766666654 4666666 77777665222
Q ss_pred EEEEcC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCC--CCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 94 VRTLTG-HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT--RGVNAIRFTPDGRWVVSGGEDNTVKLW 170 (819)
Q Consensus 94 i~~l~~-h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~--~~I~sl~fspdg~~L~sgs~Dg~I~Iw 170 (819)
...... ....|..+.-..+| ++..|+..|-.+.--.+.+-.+...+.|. +.|.++-...+|. |.+++.+|.+++-
T Consensus 238 sn~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~ 315 (671)
T COG3292 238 SNWGPMLPSGNILLLVQDAQG-ELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYL 315 (671)
T ss_pred cccCCCCcchheeeeecccCC-CEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEe
Confidence 211111 22334433333333 56667766644332222222222222222 3456666666776 6667777666654
Q ss_pred ECCCCeEEEEEecCCCC-eEEEEEeC--CCCEEEEEECCCeEEEEECCCCeEEEEe-CCCCCCeeEEEEeCCCCEEEEEE
Q 003445 171 DLTAGKLLHDFKCHEGQ-IQCIDFHP--HEFLLATGSADRTVKFWDLETFELIGSA-GPETSGVRCLTFNPDGRTLLCGL 246 (819)
Q Consensus 171 Dl~t~~~i~~~~~h~~~-I~sl~fsp--dg~~Lasgs~Dg~I~iwDl~~~~~l~~~-~~~~~~I~sl~fspdg~~Lasgs 246 (819)
+-. ......+....+. +..++..| .+..+--...-|.+.+-+-.++..+... +.....|+.+++..+|..-+...
T Consensus 316 ~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~ 394 (671)
T COG3292 316 TAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSM 394 (671)
T ss_pred cch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEec
Confidence 432 2222222222111 11112222 1222222222334444445555544432 22234577777777776666555
Q ss_pred CCCEEEEEecC
Q 003445 247 HESLKVFSWEP 257 (819)
Q Consensus 247 ~d~I~Vwd~~~ 257 (819)
.+++.-|+-+.
T Consensus 395 q~GLsrl~n~n 405 (671)
T COG3292 395 QNGLSRLDNKN 405 (671)
T ss_pred ccchhhhccCC
Confidence 65877777665
No 459
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=88.12 E-value=27 Score=40.01 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=25.3
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 003445 185 EGQIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (819)
Q Consensus 185 ~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~ 216 (819)
...|..+...+..+.|++.+.+|.|.+|++..
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 34589999999889999999999999999974
No 460
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=88.00 E-value=15 Score=44.10 Aligned_cols=92 Identities=14% Similarity=0.336 Sum_probs=56.5
Q ss_pred EEEEEcCCCCEEEEEECCCe-----EEEEECCCCeEEEEEe---cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe
Q 003445 147 NAIRFTPDGRWVVSGGEDNT-----VKLWDLTAGKLLHDFK---CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE 218 (819)
Q Consensus 147 ~sl~fspdg~~L~sgs~Dg~-----I~IwDl~t~~~i~~~~---~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~ 218 (819)
..+.|-|+|..+++-..||. |.++.. +|-....+. +-...+...+|+-....++.+ ..+.|.+|-..+..
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyh 327 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYH 327 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceE
Confidence 45889999999998776653 444432 222111121 122345667787666666555 35679999988766
Q ss_pred EEEEeCCCCCCeeEEEEeCCCC
Q 003445 219 LIGSAGPETSGVRCLTFNPDGR 240 (819)
Q Consensus 219 ~l~~~~~~~~~I~sl~fspdg~ 240 (819)
..-.....-..+.-+.|+|...
T Consensus 328 WYLK~e~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 328 WYLKVERQIPGISYVKWHPEEK 349 (1243)
T ss_pred EEEEEeecCCCcceeeeccccC
Confidence 5444444445678899999643
No 461
>PLN02193 nitrile-specifier protein
Probab=87.90 E-value=42 Score=39.09 Aligned_cols=145 Identities=12% Similarity=0.136 Sum_probs=72.8
Q ss_pred CCEEEEEECC-------CeEEEEECCCCeEEEEEc-C-CCC--Ce-EEEEEecCCCEEEEEECC-----CcEEEEECCCC
Q 003445 71 EVLVAAGAAS-------GTIKLWDLEEAKIVRTLT-G-HRS--NC-ISVDFHPFGEFFASGSLD-----TNLKIWDIRKK 133 (819)
Q Consensus 71 g~~Lasgs~D-------G~I~IWDl~s~~~i~~l~-~-h~~--~I-~sl~fsp~g~~Lasgs~D-----g~I~IwDi~t~ 133 (819)
+.+++.|+.+ ..+.+||+.+.+....-. + ... .. .+++ .-++.+++.|+.+ ..+..||+.+.
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v-~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMV-SIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEE-EECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 4455666643 347788888765432111 0 001 11 1122 2245666777654 35888998876
Q ss_pred eEEEEEec----CCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEEe-----cCCCCeEEEEEeCCCCE
Q 003445 134 GCIHTYKG----HTRGVNAIRFTPDGRWVVSGGEDN-----TVKLWDLTAGKLLHDFK-----CHEGQIQCIDFHPHEFL 199 (819)
Q Consensus 134 ~~i~~~~~----h~~~I~sl~fspdg~~L~sgs~Dg-----~I~IwDl~t~~~i~~~~-----~h~~~I~sl~fspdg~~ 199 (819)
+....-.. ....-.+++. -++++++.|+.++ .+..||+.+.+-...-. ...... .+.. -++++
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~-~~~~-~~gki 331 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA-GLEV-VQGKV 331 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc-EEEE-ECCcE
Confidence 54332111 1111122222 2456666776543 46788887765332110 001111 1222 35677
Q ss_pred EEEEECC----CeEEEEECCCCeE
Q 003445 200 LATGSAD----RTVKFWDLETFEL 219 (819)
Q Consensus 200 Lasgs~D----g~I~iwDl~~~~~ 219 (819)
++.|+.+ ..+.+||+.+.+-
T Consensus 332 yviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred EEEECCCCCccCceEEEECCCCEE
Confidence 7777755 4589999987654
No 462
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.73 E-value=32 Score=37.95 Aligned_cols=143 Identities=18% Similarity=0.338 Sum_probs=86.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCe------EEEEECCC--C--eEEE-----EEcCCCC--------CeEEEEEecCCCE
Q 003445 59 TSGIDSVSFDSSEVLVAAGAASGT------IKLWDLEE--A--KIVR-----TLTGHRS--------NCISVDFHPFGEF 115 (819)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~------I~IWDl~s--~--~~i~-----~l~~h~~--------~I~sl~fsp~g~~ 115 (819)
-+.+..+.+.+++..+++.+.+|. +..+++.. + ..+. .+....+ ..-+|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356778888865555666677777 66666543 1 1111 1111111 3447888778887
Q ss_pred EEEEECC------CcEEEEECCCCeEEEEEe---------------cCCCCeEEEEEcCCCCEEEEEECCC-------e-
Q 003445 116 FASGSLD------TNLKIWDIRKKGCIHTYK---------------GHTRGVNAIRFTPDGRWVVSGGEDN-------T- 166 (819)
Q Consensus 116 Lasgs~D------g~I~IwDi~t~~~i~~~~---------------~h~~~I~sl~fspdg~~L~sgs~Dg-------~- 166 (819)
+++.-.+ ..|+.++.. +..+..+. ..+..+.+++++|+|+.|+++.+.. .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7777666 788888876 55544431 1345688999999999777664422 1
Q ss_pred ------EEE--EECCC-CeEEEEEe----c-----CCCCeEEEEEeCCCCEEEE
Q 003445 167 ------VKL--WDLTA-GKLLHDFK----C-----HEGQIQCIDFHPHEFLLAT 202 (819)
Q Consensus 167 ------I~I--wDl~t-~~~i~~~~----~-----h~~~I~sl~fspdg~~Las 202 (819)
+++ ||..+ ++....+. . ....|..+.+.+++.+|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 344 55544 32222222 1 2456888999999886665
No 463
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.31 E-value=16 Score=46.61 Aligned_cols=233 Identities=15% Similarity=0.153 Sum_probs=107.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCC-CeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE
Q 003445 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRS-NCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT 138 (819)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~-~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~ 138 (819)
.....++|++...+++.|..+|.|+++-...-+.......... .+..+.|-...........+..+.+|.......+.
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~- 114 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF- 114 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee-
Confidence 4567789999999999999999999997654443332221110 11122222112222333344455555543322221
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe--cCCCCeEEE-EEeCCCCEEEEEECCCeEEEEECC
Q 003445 139 YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK--CHEGQIQCI-DFHPHEFLLATGSADRTVKFWDLE 215 (819)
Q Consensus 139 ~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~--~h~~~I~sl-~fspdg~~Lasgs~Dg~I~iwDl~ 215 (819)
+...+.+....+--.+ +.| ..+.+++||..-... ..+. .-...-... .+.+...-+..--.+-.-.+|-+.
T Consensus 115 ---~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 188 (993)
T KOG1983|consen 115 ---LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQL-SDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISLP 188 (993)
T ss_pred ---cCCcceeccCCCCcch-hcc-cCceeeEeeechhhh-ccceeccccccccceeeeeccceeeeccccccccceeecc
Confidence 1223333333333334 455 788888888653221 1111 000000000 010100000000000011111111
Q ss_pred CCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEE
Q 003445 216 TFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWV 295 (819)
Q Consensus 216 ~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ 295 (819)
.-. ..+..+...+.+..+......+..+....+.+|+-........+.... .....++..++++..||.+..||
T Consensus 189 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~h~Dgs~~fWd 262 (993)
T KOG1983|consen 189 DAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNG----QLESRDGSHFVSYHTDGSYAFWD 262 (993)
T ss_pred ccc--ccccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhccccc----ccCccCCceEEEEEecCCEEeee
Confidence 101 122233445555555555555555544445555544333222221111 11146789999999999999999
Q ss_pred ecCCceeeee
Q 003445 296 VDISRIEPYT 305 (819)
Q Consensus 296 ld~~~~~p~~ 305 (819)
++.+..+...
T Consensus 263 ~s~g~~~~~~ 272 (993)
T KOG1983|consen 263 VSSGKLQIAR 272 (993)
T ss_pred cCCCceeecC
Confidence 9998774433
No 464
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.16 E-value=0.077 Score=59.61 Aligned_cols=141 Identities=13% Similarity=0.162 Sum_probs=100.5
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEec
Q 003445 105 ISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV-SGGEDNTVKLWDLTAGKLLHDFKC 183 (819)
Q Consensus 105 ~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~-sgs~Dg~I~IwDl~t~~~i~~~~~ 183 (819)
....|.+.+.-++.++.+..+..||- .++...... ..+....++|.-+|..++ .+-..+.+.+||+.+......-.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 34568888877999999999999994 344443333 345566788888776544 455678999999975432111111
Q ss_pred CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC
Q 003445 184 HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (819)
Q Consensus 184 h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (819)
....-.-+.|++.+..++.|...|.+.||+..+...+.....|...+.+++|.+.+..+..+.+
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd 179 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCD 179 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcH
Confidence 1122222789999999999999999999999887777777778888999999998877766554
No 465
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.06 E-value=14 Score=44.71 Aligned_cols=143 Identities=13% Similarity=0.183 Sum_probs=89.3
Q ss_pred CcEEEEEeCCCeEEEEECCCCceE------EEec----------------CCCCCeEEEEEcC--CCCEEEEEECCCeEE
Q 003445 29 SRVLVTGGEDHKVNLWAIGKPNAI------LSLS----------------GHTSGIDSVSFDS--SEVLVAAGAASGTIK 84 (819)
Q Consensus 29 ~~~Latgs~Dg~V~IWdl~~~~~i------~~l~----------------~h~~~V~~l~fsp--dg~~Lasgs~DG~I~ 84 (819)
..+|+++. .+.|.||+....... ..+. .....|+.+.... +...|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 44566665 578999997432221 1110 0112355555433 556888999999999
Q ss_pred EEECCC-------C----e---------EEEEEcCCCCCeEEEEEe--cCCCEEEEEECCCcEEEEECCCC--eEEE-EE
Q 003445 85 LWDLEE-------A----K---------IVRTLTGHRSNCISVDFH--PFGEFFASGSLDTNLKIWDIRKK--GCIH-TY 139 (819)
Q Consensus 85 IWDl~s-------~----~---------~i~~l~~h~~~I~sl~fs--p~g~~Lasgs~Dg~I~IwDi~t~--~~i~-~~ 139 (819)
+|.+++ . . +-..+. -...+++++++ ...++||+++....|.||-.... +... .-
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 997631 1 0 111222 23478999999 77888999888888888755431 1111 11
Q ss_pred ecCCCCeEEEEEcCCC---C---EEEEEECCCeEEEEECC
Q 003445 140 KGHTRGVNAIRFTPDG---R---WVVSGGEDNTVKLWDLT 173 (819)
Q Consensus 140 ~~h~~~I~sl~fspdg---~---~L~sgs~Dg~I~IwDl~ 173 (819)
..|...|-+|+|-++. . ++++++-.|.+.+|++.
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 1255678899997733 2 78888899999998873
No 466
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.97 E-value=28 Score=35.94 Aligned_cols=139 Identities=11% Similarity=0.126 Sum_probs=82.2
Q ss_pred CEEEEEECCCcEEEEECC--CCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC---C---eEEEE---ECC--CCeEEE-
Q 003445 114 EFFASGSLDTNLKIWDIR--KKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED---N---TVKLW---DLT--AGKLLH- 179 (819)
Q Consensus 114 ~~Lasgs~Dg~I~IwDi~--t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~D---g---~I~Iw---Dl~--t~~~i~- 179 (819)
+.|+.+...+.|-+|++. ..+.+.++.. -+.|..+.++..|++|++--.+ . .+++| ... ....+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455555667889999998 3445666664 4789999999999999986433 2 55664 222 111111
Q ss_pred EEec---------------------CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeE-EE-----Ee-----CCCC
Q 003445 180 DFKC---------------------HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL-IG-----SA-----GPET 227 (819)
Q Consensus 180 ~~~~---------------------h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~-l~-----~~-----~~~~ 227 (819)
.+-+ -..++.+++..|-..-|+.|+ ++.+.+|.+..... .. .+ ..+.
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 1111 123566777777544455554 56788998764332 11 11 1111
Q ss_pred -CCeeEEEEeCCCCEEEEEECCCEEEEEec
Q 003445 228 -SGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (819)
Q Consensus 228 -~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (819)
-.+..++|. +.|+|..++..++++.+.
T Consensus 187 ~~~p~~v~ic--~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred CceEEEEEEE--eeEEEEecCCEEEEEEEe
Confidence 124556664 458888888887777653
No 467
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.95 E-value=22 Score=33.95 Aligned_cols=114 Identities=16% Similarity=0.228 Sum_probs=73.2
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCC--------eEEEEEcCCCCCeEEEEEec-----CCCEEEEEECCCcEEEEEC
Q 003445 64 SVSFDSSEVLVAAGAASGTIKLWDLEEA--------KIVRTLTGHRSNCISVDFHP-----FGEFFASGSLDTNLKIWDI 130 (819)
Q Consensus 64 ~l~fspdg~~Lasgs~DG~I~IWDl~s~--------~~i~~l~~h~~~I~sl~fsp-----~g~~Lasgs~Dg~I~IwDi 130 (819)
.-.|......|++++.-|+|.|++.... ..+..+. -...|++++-.+ ....|+.|+ ...|..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 4456666678888899999999987633 2344444 456777776554 234577765 567999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEcC----CCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003445 131 RKKGCIHTYKGHTRGVNAIRFTP----DGRWVVSGGEDNTVKLWDLTAGKLLHDF 181 (819)
Q Consensus 131 ~t~~~i~~~~~h~~~I~sl~fsp----dg~~L~sgs~Dg~I~IwDl~t~~~i~~~ 181 (819)
....-+..- .-...|+++.+-. +..++++ +-+..|.-||....+...+.
T Consensus 81 ~~N~d~Fyk-e~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSDLFYK-EVPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCchhhhh-hCccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEEEEEe
Confidence 877655433 3346688887743 2334444 45677777777655555443
No 468
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.66 E-value=0.089 Score=59.11 Aligned_cols=147 Identities=18% Similarity=0.178 Sum_probs=99.8
Q ss_pred EEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCE-EEEEECCCeEEEEECCCCeEEEEE
Q 003445 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVL-VAAGAASGTIKLWDLEEAKIVRTL 97 (819)
Q Consensus 19 V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~-Lasgs~DG~I~IWDl~s~~~i~~l 97 (819)
-....|-+.+.+ ++.++.+..+..||- .++....+. .++....++|..++.. ++.+-..+.+.+||+.+...-+.-
T Consensus 37 pi~~~w~~e~~n-lavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 37 PIIHRWRPEGHN-LAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred cceeeEecCCCc-eehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 345567786666 666667778888884 344444433 3556678889887764 444566899999999754322211
Q ss_pred cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 98 TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (819)
Q Consensus 98 ~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~I 169 (819)
.+....-.-+.|++.+..++.+...|.+.||+..+.+.+-....|...+++++|.+.+. .+.++.|..+.+
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v 184 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSV 184 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHHHH
Confidence 12222222378999888999999999999999988776666655889999999998764 455555554443
No 469
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.09 E-value=7.3 Score=47.07 Aligned_cols=113 Identities=15% Similarity=0.209 Sum_probs=77.5
Q ss_pred CEEEEEEee-CCCcEEEEEeCCCeEEEEECCC-------C-------------ceEEEecCCCCCeEEEEEc--CCCCEE
Q 003445 18 TVNCLKIGR-KSSRVLVTGGEDHKVNLWAIGK-------P-------------NAILSLSGHTSGIDSVSFD--SSEVLV 74 (819)
Q Consensus 18 ~V~~lafsp-~~~~~Latgs~Dg~V~IWdl~~-------~-------------~~i~~l~~h~~~V~~l~fs--pdg~~L 74 (819)
.|+.+.... .+..+|+.|.+||.|.+|..++ . ++...+. ....+++++++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 466665443 2567899999999999996511 1 1122222 34578999998 788899
Q ss_pred EEEECCCeEEEEECCCC--eE-EEEEcCCCCCeEEEEEecCC---C---EEEEEECCCcEEEEECC
Q 003445 75 AAGAASGTIKLWDLEEA--KI-VRTLTGHRSNCISVDFHPFG---E---FFASGSLDTNLKIWDIR 131 (819)
Q Consensus 75 asgs~DG~I~IWDl~s~--~~-i~~l~~h~~~I~sl~fsp~g---~---~Lasgs~Dg~I~IwDi~ 131 (819)
|+++....|.||-.... +. ...-..|...|.+|+|-++. . .+++++-.|.+.+|++.
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 99998888888866432 11 11111366789999997643 2 78889999999999883
No 470
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.96 E-value=9 Score=48.71 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=24.0
Q ss_pred eCCCCEEEEEECCCeEEEEECCCCeE
Q 003445 194 HPHEFLLATGSADRTVKFWDLETFEL 219 (819)
Q Consensus 194 spdg~~Lasgs~Dg~I~iwDl~~~~~ 219 (819)
..++..++++..||.+.+||...++.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 77899999999999999999998866
No 471
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=85.67 E-value=92 Score=37.65 Aligned_cols=234 Identities=13% Similarity=0.167 Sum_probs=121.6
Q ss_pred EEeeCCCcEEEEEeCCCeEEEEEC-CCCceEEEecC-CCCCeEEEEEcCC---CCEEEEEECCCe-EEEEECCCC-----
Q 003445 23 KIGRKSSRVLVTGGEDHKVNLWAI-GKPNAILSLSG-HTSGIDSVSFDSS---EVLVAAGAASGT-IKLWDLEEA----- 91 (819)
Q Consensus 23 afsp~~~~~Latgs~Dg~V~IWdl-~~~~~i~~l~~-h~~~V~~l~fspd---g~~Lasgs~DG~-I~IWDl~s~----- 91 (819)
.++|+.. .+-.|=....|--|=+ .+++.++.+.- .+.-|.|+..... ..+.++|-.++. -++-.+..+
T Consensus 34 ~~s~~sn-~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~ 112 (670)
T PF10395_consen 34 DFSPDSN-QIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTE 112 (670)
T ss_pred ccCCCCc-eEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCcccc
Confidence 4555333 3333323333444433 46677776653 3456777776432 235555544433 343333222
Q ss_pred ------e--EEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeE--EEEEec-CCC------CeEEEEEcCC
Q 003445 92 ------K--IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC--IHTYKG-HTR------GVNAIRFTPD 154 (819)
Q Consensus 92 ------~--~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~--i~~~~~-h~~------~I~sl~fspd 154 (819)
+ ....+. -.+.|..+.|..+++.+++.-.+|.|.+||...+.. +..++. +.. .|.....-..
T Consensus 113 ~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~ 191 (670)
T PF10395_consen 113 DGTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENG 191 (670)
T ss_pred ccccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccC
Confidence 1 111222 357788999999999999999999999999932221 111211 111 1222221112
Q ss_pred CCEEEEEEC-C---CeEEEEEC-CCCeEEEEEe---cCCCCeEEEEEeC-CCCEEEEEECCCeEEEEECCCCeEEEEeCC
Q 003445 155 GRWVVSGGE-D---NTVKLWDL-TAGKLLHDFK---CHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLETFELIGSAGP 225 (819)
Q Consensus 155 g~~L~sgs~-D---g~I~IwDl-~t~~~i~~~~---~h~~~I~sl~fsp-dg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~ 225 (819)
..++++.+. + -..+++.+ .....+.++. .+........|.- +|.+..- .+++|.+|++...+...++.-
T Consensus 192 ~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l 269 (670)
T PF10395_consen 192 KDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISL 269 (670)
T ss_pred CceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEe
Confidence 334444443 2 24677777 1222333332 1222223333333 4544443 578999999999887666432
Q ss_pred C-----C-CCeeEEEEeCCCCEEEEEECCCEEEEEecCCcee
Q 003445 226 E-----T-SGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCH 261 (819)
Q Consensus 226 ~-----~-~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~ 261 (819)
. . ..+.++. .|..+.++.+..+.|.+.|+.-...+
T Consensus 270 ~~ii~~~~~~~vSl~-~~s~nRvLLs~~nkIyLld~~~~siL 310 (670)
T PF10395_consen 270 PSIIDKESDDLVSLK-PPSPNRVLLSVNNKIYLLDLKFESIL 310 (670)
T ss_pred chhhccccccceEee-cCCCCeEEEEcCCEEEEEeehhhhhh
Confidence 2 1 2233433 34445666666888888888654433
No 472
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=85.53 E-value=94 Score=37.65 Aligned_cols=285 Identities=14% Similarity=0.189 Sum_probs=140.0
Q ss_pred EEeccCCCEEEEEEeeCCCcEEEEEeCCC--eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC------CCe
Q 003445 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDH--KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA------SGT 82 (819)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~~Latgs~Dg--~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~------DG~ 82 (819)
.+..+...+..+.|+|+ +.+++..+.++ ...+|-+.... .+..+...+....|++++..++.... ++.
T Consensus 54 ~~~~~~~~~~~~~~spd-g~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~ 129 (620)
T COG1506 54 RLLTFGGGVSELRWSPD-GSVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGG 129 (620)
T ss_pred cccccCCcccccccCCC-CCEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEEEecccccccCCc
Confidence 45567788899999994 45555554222 23344332221 33445667888899998887776211 222
Q ss_pred -------EEEEECCCC-eE-----------EEEEcCCCCCeEEEEEecCCCEEEEEECCCc-------EEEEECCCCeEE
Q 003445 83 -------IKLWDLEEA-KI-----------VRTLTGHRSNCISVDFHPFGEFFASGSLDTN-------LKIWDIRKKGCI 136 (819)
Q Consensus 83 -------I~IWDl~s~-~~-----------i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~-------I~IwDi~t~~~i 136 (819)
+.+|....+ .. ..........+....+++++..++....+.. ..++...++ .+
T Consensus 130 ~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 208 (620)
T COG1506 130 DHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNG-EL 208 (620)
T ss_pred eeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCC-ce
Confidence 334433333 11 1112223445666667766676666554432 333333233 34
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEECC-C-------eEEEEECCCCeEEEEEecCC--CCeEEEEE-eCCCCEEEEEEC
Q 003445 137 HTYKGHTRGVNAIRFTPDGRWVVSGGED-N-------TVKLWDLTAGKLLHDFKCHE--GQIQCIDF-HPHEFLLATGSA 205 (819)
Q Consensus 137 ~~~~~h~~~I~sl~fspdg~~L~sgs~D-g-------~I~IwDl~t~~~i~~~~~h~--~~I~sl~f-spdg~~Lasgs~ 205 (819)
.........+..+.|.++|+.++..+.. . .+.+++...++......... ..-..+.+ -+++..++++..
T Consensus 209 ~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (620)
T COG1506 209 ESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGLDGDGLLFIATD 288 (620)
T ss_pred EEEcCCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCCcccCcHHhccccCCCcEEEEEec
Confidence 4444455668889999999855544332 2 23444422222222111100 00001111 123333434433
Q ss_pred -CCeEEEEECCCCe-EEEEeCCCCCCeeEEEEeCCCCEEEEEECC---CEEEEEecCCceeeeeeccccceeEeEecCCC
Q 003445 206 -DRTVKFWDLETFE-LIGSAGPETSGVRCLTFNPDGRTLLCGLHE---SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGK 280 (819)
Q Consensus 206 -Dg~I~iwDl~~~~-~l~~~~~~~~~I~sl~fspdg~~Lasgs~d---~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~ 280 (819)
.|...++...... ...........+..+.+ ++..+++...+ .-.+|-+...+...........+.......-+
T Consensus 289 ~~g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~--~~~~~~~~~s~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e 366 (620)
T COG1506 289 GGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDV--DGRKLALAYSSPTEPPEIYLYDRGEEAKLTSSNNSGLKKVKLAEPE 366 (620)
T ss_pred CCCceEEEEEeccCCceeeecCCCceEEEEee--CCCEEEEEecCCCCccceEEEcCCCceEEeecccccccccccCCce
Confidence 5667777665322 22223333455666665 66666654332 24444444333333333333333334444556
Q ss_pred EEEEEEcCC-eEEEEEecCCcee
Q 003445 281 LLGCSYNQS-CVGVWVVDISRIE 302 (819)
Q Consensus 281 lLa~~~~Dg-~V~IW~ld~~~~~ 302 (819)
.+-.-+.|| .|.-|-+......
T Consensus 367 ~~~~~~~dG~~i~~~l~~P~~~~ 389 (620)
T COG1506 367 PVTYKSNDGETIHGWLYKPPGFD 389 (620)
T ss_pred EEEEEcCCCCEEEEEEecCCCCC
Confidence 666666666 8888876665444
No 473
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=85.09 E-value=25 Score=38.97 Aligned_cols=103 Identities=20% Similarity=0.338 Sum_probs=58.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE---EEEE----cCCCCCeEEEEEecC----CCEEEEEECC-------
Q 003445 61 GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI---VRTL----TGHRSNCISVDFHPF----GEFFASGSLD------- 122 (819)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~---i~~l----~~h~~~I~sl~fsp~----g~~Lasgs~D------- 122 (819)
..+.|+|.|+++++++ ...|.|++++ ..+.. +..+ .........++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999988766 6699999999 44443 3333 124457899999994 3333333321
Q ss_pred -CcEEEEECCCC-------eEE-EEEec---CCCCeEEEEEcCCCCEEEEEECCC
Q 003445 123 -TNLKIWDIRKK-------GCI-HTYKG---HTRGVNAIRFTPDGRWVVSGGEDN 165 (819)
Q Consensus 123 -g~I~IwDi~t~-------~~i-~~~~~---h~~~I~sl~fspdg~~L~sgs~Dg 165 (819)
..|.-|..... +.+ ..+.. ....-..|.|.|||.+.++.+..+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 23444544333 111 12222 233456799999997766666544
No 474
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.04 E-value=10 Score=48.10 Aligned_cols=138 Identities=17% Similarity=0.224 Sum_probs=88.9
Q ss_pred ECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEe--------cCCCEEEEEECCCcEEEEECCC----CeE-----EEEEe
Q 003445 78 AASGTIKLWDLEEAKIVRTLTGHRSNCISVDFH--------PFGEFFASGSLDTNLKIWDIRK----KGC-----IHTYK 140 (819)
Q Consensus 78 s~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fs--------p~g~~Lasgs~Dg~I~IwDi~t----~~~-----i~~~~ 140 (819)
+.|+.+.+|+.+++.....+.+....|..|..- |.=+++++.+.--.|.++-+.- +.. ..++.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 458999999999988878888777777776642 2234444444455566664321 110 12223
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEE--ECCCC---e-E----------------EEEEe-cCCCCeEEEEEeCCC
Q 003445 141 GHTRGVNAIRFTPDGRWVVSGGEDNTVKLW--DLTAG---K-L----------------LHDFK-CHEGQIQCIDFHPHE 197 (819)
Q Consensus 141 ~h~~~I~sl~fspdg~~L~sgs~Dg~I~Iw--Dl~t~---~-~----------------i~~~~-~h~~~I~sl~fspdg 197 (819)
.....|.|+....+|+.+++| .||.|+=. ....| + + +..+. .+..+|..+.....-
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 335568899988888876665 56644321 11111 0 0 11222 356789999998888
Q ss_pred CEEEEEECCCeEEEEECCC
Q 003445 198 FLLATGSADRTVKFWDLET 216 (819)
Q Consensus 198 ~~Lasgs~Dg~I~iwDl~~ 216 (819)
..+.+-++.|+|.+||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8999999999999999976
No 475
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.99 E-value=6.7 Score=40.81 Aligned_cols=64 Identities=8% Similarity=0.141 Sum_probs=49.1
Q ss_pred EeCCCCEEEEEECCCeEEEEECCCCeEEEEe-------C-------CCCCCeeEEEEeCCCCEEEEEECCCEEEEEec
Q 003445 193 FHPHEFLLATGSADRTVKFWDLETFELIGSA-------G-------PETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (819)
Q Consensus 193 fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~-------~-------~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (819)
+..++.+|++-+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+++....|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 4457889999999999999999998765432 1 24566888889989988888777766666644
No 476
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=84.94 E-value=3.1 Score=31.48 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=27.5
Q ss_pred CCEEEEEEeeCCC--cEEEEEeCCCeEEEEECCC
Q 003445 17 STVNCLKIGRKSS--RVLVTGGEDHKVNLWAIGK 48 (819)
Q Consensus 17 ~~V~~lafsp~~~--~~Latgs~Dg~V~IWdl~~ 48 (819)
+.|.+++|+|..+ .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4789999998666 7888888889999999874
No 477
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.27 E-value=15 Score=41.57 Aligned_cols=137 Identities=14% Similarity=0.204 Sum_probs=87.5
Q ss_pred CCCeEEEEECCCC--ceEEEec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE----EEcCCCCCeEEEEE
Q 003445 37 EDHKVNLWAIGKP--NAILSLS-GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVR----TLTGHRSNCISVDF 109 (819)
Q Consensus 37 ~Dg~V~IWdl~~~--~~i~~l~-~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~----~l~~h~~~I~sl~f 109 (819)
..|.+.=|-+... ...-.+. ...++|.++.|++|.+.|++--.+.+|.+++....+... +.+.....|...+|
T Consensus 41 rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W 120 (657)
T KOG2377|consen 41 RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCW 120 (657)
T ss_pred ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEE
Confidence 3455666655322 2222222 356799999999999999999999999999985443322 22333456889999
Q ss_pred ecCCCEEEEEECCCcEEEEECCC-CeEEEEEecCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCC
Q 003445 110 HPFGEFFASGSLDTNLKIWDIRK-KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE--DNTVKLWDLTAG 175 (819)
Q Consensus 110 sp~g~~Lasgs~Dg~I~IwDi~t-~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~--Dg~I~IwDl~t~ 175 (819)
..+ .-+|..+..| +-+|.+.. ...++..+.|+..|....|.++.+.++.++. .+.+.=+-++++
T Consensus 121 ~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 121 TSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred ecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 865 5566665545 66665543 3345556778888999999998876554433 333433444443
No 478
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.38 E-value=8.8 Score=39.93 Aligned_cols=67 Identities=12% Similarity=0.170 Sum_probs=47.1
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEE-------e-------cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 003445 151 FTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF-------K-------CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (819)
Q Consensus 151 fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~-------~-------~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~ 216 (819)
+..++++|++-+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-+ +|..+.||..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3446889999999999999999998765432 1 1334577777777776666554 56777777654
Q ss_pred Ce
Q 003445 217 FE 218 (819)
Q Consensus 217 ~~ 218 (819)
+.
T Consensus 97 ~~ 98 (219)
T PF07569_consen 97 GC 98 (219)
T ss_pred ce
Confidence 33
No 479
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=82.50 E-value=75 Score=34.13 Aligned_cols=245 Identities=13% Similarity=0.101 Sum_probs=142.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEE-E
Q 003445 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH-T 138 (819)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~-~ 138 (819)
..-..++-.+||..-+++...|.|--.|..+|+....--+....-..|...|+|..-++-+.. .|.-.|-++.+... .
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~ 140 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP 140 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence 455678888999888888888889889999998877666655566677788888766654433 45556655544221 1
Q ss_pred E--ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec-CCCCeEEEEEeCCCCEEEEEECCCeEEEEECC
Q 003445 139 Y--KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC-HEGQIQCIDFHPHEFLLATGSADRTVKFWDLE 215 (819)
Q Consensus 139 ~--~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~-h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~ 215 (819)
+ +.-........|.++|+.-+++.. |.---.|-. ...+..|.. ....-+.|+..|+|.+-++.-.+..|-..|..
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~ 218 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPF 218 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccc
Confidence 1 222355778899999998777752 211111211 122333332 23456788999999988887778888888877
Q ss_pred CCeEEEEe--CCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCc-eeeeeecccc--ceeEeEec-CCCEEEEEEcCC
Q 003445 216 TFELIGSA--GPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIR-CHDAVDVGWS--RLSDLNVH-EGKLLGCSYNQS 289 (819)
Q Consensus 216 ~~~~l~~~--~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~-~~~~~~~~~s--~i~~l~~~-dg~lLa~~~~Dg 289 (819)
++.....- .......+.+.-+|.|+.-++.... -.++-+++.. ....+....+ .-.++.+. .+++...-..-+
T Consensus 219 ~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~-g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~ag 297 (353)
T COG4257 219 AGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGT-GSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAG 297 (353)
T ss_pred cCCcceecCCCcccccccccccCccCcEEEeccCC-ceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccC
Confidence 76322211 1213345666667778776664332 2333333321 1222222221 22233332 234444445556
Q ss_pred eEEEEEecCCceeeeeecc
Q 003445 290 CVGVWVVDISRIEPYTIGS 308 (819)
Q Consensus 290 ~V~IW~ld~~~~~p~~~~~ 308 (819)
.|.-+|-.+.++..|....
T Consensus 298 ai~rfdpeta~ftv~p~pr 316 (353)
T COG4257 298 AIGRFDPETARFTVLPIPR 316 (353)
T ss_pred ceeecCcccceEEEecCCC
Confidence 6666666666666555444
No 480
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=82.23 E-value=95 Score=35.11 Aligned_cols=184 Identities=22% Similarity=0.324 Sum_probs=110.4
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEe----cCCCE--EEEEE-CC---CcEEEEECC--CCeEE
Q 003445 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFH----PFGEF--FASGS-LD---TNLKIWDIR--KKGCI 136 (819)
Q Consensus 69 pdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fs----p~g~~--Lasgs-~D---g~I~IwDi~--t~~~i 136 (819)
|...+|+....++-+.+||+. |+.++.+.. +....++.- -.|+. |+.++ .+ ..|++|.+. ++. +
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-L 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-E
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-c
Confidence 455688888889999999987 556666642 334444332 23443 44444 32 469999765 343 3
Q ss_pred EEEec-------CCCCeEEEEEc--C-CCC-EEEEEECCCeEEEEECC---CC----eEEEEEecCCCCeEEEEEeCCCC
Q 003445 137 HTYKG-------HTRGVNAIRFT--P-DGR-WVVSGGEDNTVKLWDLT---AG----KLLHDFKCHEGQIQCIDFHPHEF 198 (819)
Q Consensus 137 ~~~~~-------h~~~I~sl~fs--p-dg~-~L~sgs~Dg~I~IwDl~---t~----~~i~~~~~h~~~I~sl~fspdg~ 198 (819)
..+.. ....++.+|+. + +|. +++....+|.+..|-+. .+ +.++.|.. .+.+-.|.......
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g 220 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETG 220 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTT
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccC
Confidence 33321 12346777764 3 454 56667788988777664 33 46777774 45788899988888
Q ss_pred EEEEEECCCeEEEEECCC-----CeEEEEeCC--CCCCeeEEEEe--CCC-CEEEEEECC--CEEEEEecC
Q 003445 199 LLATGSADRTVKFWDLET-----FELIGSAGP--ETSGVRCLTFN--PDG-RTLLCGLHE--SLKVFSWEP 257 (819)
Q Consensus 199 ~Lasgs~Dg~I~iwDl~~-----~~~l~~~~~--~~~~I~sl~fs--pdg-~~Lasgs~d--~I~Vwd~~~ 257 (819)
+|+.|-++.-|+-|+.+. ++.+....+ ....|-.|++- .+| .||++++.+ ...||+-+.
T Consensus 221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 999999999899998862 334433332 34567777774 343 477777654 588998764
No 481
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=81.64 E-value=28 Score=35.91 Aligned_cols=102 Identities=18% Similarity=0.249 Sum_probs=67.8
Q ss_pred CEEEEEECCCeEEEEECC--CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC------eEEEE-ECCC----CeEEE-
Q 003445 156 RWVVSGGEDNTVKLWDLT--AGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR------TVKFW-DLET----FELIG- 221 (819)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~--t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg------~I~iw-Dl~~----~~~l~- 221 (819)
..|+.+...+.|.+|++. ..+.+..|.. -+.|..+.++..|.+|++--.+. .+++| +++. ..++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455555778889999998 3456667764 48899999999999999964332 45654 2211 11111
Q ss_pred EeC---------------------CCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCC
Q 003445 222 SAG---------------------PETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPI 258 (819)
Q Consensus 222 ~~~---------------------~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~ 258 (819)
.+- +...++.+++..|-.--|++|+++.+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence 111 1234677888888656677888999999987643
No 482
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=80.75 E-value=53 Score=31.39 Aligned_cols=111 Identities=14% Similarity=0.177 Sum_probs=70.4
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCe--------EEEEEecCCCCeEEEEEcC-----CCCEEEEEECCCeEEEEECCC
Q 003445 108 DFHPFGEFFASGSLDTNLKIWDIRKKG--------CIHTYKGHTRGVNAIRFTP-----DGRWVVSGGEDNTVKLWDLTA 174 (819)
Q Consensus 108 ~fsp~g~~Lasgs~Dg~I~IwDi~t~~--------~i~~~~~h~~~I~sl~fsp-----dg~~L~sgs~Dg~I~IwDl~t 174 (819)
.|......|++++..|.|.|++..... .+..+. -...|++++-.+ +...|+.| ....|..||+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEccc
Confidence 455555678888889999999876432 333443 456677776544 23456655 567889999987
Q ss_pred CeEEEEEecCCCCeEEEEEeC----CCCEEEEEECCCeEEEEECCCCeEEEE
Q 003445 175 GKLLHDFKCHEGQIQCIDFHP----HEFLLATGSADRTVKFWDLETFELIGS 222 (819)
Q Consensus 175 ~~~i~~~~~h~~~I~sl~fsp----dg~~Lasgs~Dg~I~iwDl~~~~~l~~ 222 (819)
..-+..-. -...|.++.+-. ...++++| .+..|.-||.+..+....
T Consensus 83 N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 83 NSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred Cchhhhhh-CccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEE
Confidence 76554433 335677776633 23455554 467888888776665544
No 483
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=80.62 E-value=90 Score=33.84 Aligned_cols=152 Identities=12% Similarity=0.131 Sum_probs=96.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc--CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe--
Q 003445 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT--GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG-- 134 (819)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~--~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~-- 134 (819)
.+-+..+.++. ++.+.+..+.-++|.|+.+......+. ...+.-.++. -.|++..++..|.-+.++|+.+..
T Consensus 86 ~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~--vsGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEE--ecCCEEEEeeccCcEEEEECCCCCCc
Confidence 44566677754 466666677779999997654322221 1223333444 458998888877778888887543
Q ss_pred -EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe---EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEE
Q 003445 135 -CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK---LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVK 210 (819)
Q Consensus 135 -~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~---~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~ 210 (819)
....+.......+.++.+ |++-+.+..|+-+.+.|+.... .+.... ....+.++..+++--+++... --+.
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~--egvl 236 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYD--EGVL 236 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEcc--cceE
Confidence 334444444445677776 7788888899999999997643 222222 233678888887766666553 3467
Q ss_pred EEECCCCeE
Q 003445 211 FWDLETFEL 219 (819)
Q Consensus 211 iwDl~~~~~ 219 (819)
+-|..+.+.
T Consensus 237 ivd~s~~ss 245 (370)
T COG5276 237 IVDVSGPSS 245 (370)
T ss_pred EEecCCCCC
Confidence 777776553
No 484
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.62 E-value=28 Score=40.24 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=59.4
Q ss_pred CeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe
Q 003445 103 NCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182 (819)
Q Consensus 103 ~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~ 182 (819)
.|..+..++.|..++..+.+|.+.++=.+.+..-..++.....|+|-.|.-+.+ |++.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~-~ftss-------------------- 163 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER-FFTSS-------------------- 163 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce-eeccC--------------------
Confidence 355667788888888888888666655444444444443333344444432221 22111
Q ss_pred cCCCCeEEEEEeCCC---CEEEEEECCCeEEEEECCCCeEEEE
Q 003445 183 CHEGQIQCIDFHPHE---FLLATGSADRTVKFWDLETFELIGS 222 (819)
Q Consensus 183 ~h~~~I~sl~fspdg---~~Lasgs~Dg~I~iwDl~~~~~l~~ 222 (819)
..-.+..++|||+. ..|..-+.|..|++||+.....+..
T Consensus 164 -~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 164 -TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred -CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhc
Confidence 11235567899974 5777777899999999987665543
No 485
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.53 E-value=17 Score=46.13 Aligned_cols=138 Identities=15% Similarity=0.215 Sum_probs=88.5
Q ss_pred eCCCeEEEEECCCCceEEEecCCCCCeEEEEE--------cCCCCEEEEEECCCeEEEEECCCCe----E-----EEEEc
Q 003445 36 GEDHKVNLWAIGKPNAILSLSGHTSGIDSVSF--------DSSEVLVAAGAASGTIKLWDLEEAK----I-----VRTLT 98 (819)
Q Consensus 36 s~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~f--------spdg~~Lasgs~DG~I~IWDl~s~~----~-----i~~l~ 98 (819)
+-|..+.+|+.+++.....+.+-...|..+.. -|.=++++.-+.--.|.++-+.-.+ . ..++.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 35788999999998888888887777777764 2222344444445566666543211 1 01222
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEE--EECCCC---e-E----------------EEEEe-cCCCCeEEEEEcCCC
Q 003445 99 GHRSNCISVDFHPFGEFFASGSLDTNLKI--WDIRKK---G-C----------------IHTYK-GHTRGVNAIRFTPDG 155 (819)
Q Consensus 99 ~h~~~I~sl~fsp~g~~Lasgs~Dg~I~I--wDi~t~---~-~----------------i~~~~-~h~~~I~sl~fspdg 155 (819)
...-.|.++....+|+.|++| .||.|+- |....+ + | +..+. .+..+|..+.....-
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 234568888877788777766 5664432 222211 1 1 11122 456789999999888
Q ss_pred CEEEEEECCCeEEEEECCC
Q 003445 156 RWVVSGGEDNTVKLWDLTA 174 (819)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t 174 (819)
..+++-+..|.|.+||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8899999999999999976
No 486
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=80.20 E-value=1.7e+02 Score=36.87 Aligned_cols=98 Identities=12% Similarity=0.141 Sum_probs=55.4
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC--CCCCeeEEEEeCCCCEEEEEE-CCCEEEEEecCCce--eeeee
Q 003445 191 IDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP--ETSGVRCLTFNPDGRTLLCGL-HESLKVFSWEPIRC--HDAVD 265 (819)
Q Consensus 191 l~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~--~~~~I~sl~fspdg~~Lasgs-~d~I~Vwd~~~~~~--~~~~~ 265 (819)
.+..|...++++| ....+++||+-..+++..... ....|..+.+ .+..+++|. .+++.++.|+.... +...+
T Consensus 939 ~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 4455776666665 357899999988776655432 2345666666 455677664 45788888776432 22222
Q ss_pred ccc-cceeEeEecCCCEEEEEEcCCeE
Q 003445 266 VGW-SRLSDLNVHEGKLLGCSYNQSCV 291 (819)
Q Consensus 266 ~~~-s~i~~l~~~dg~lLa~~~~Dg~V 291 (819)
-.. ..+..+..-|-..++.+.-=|.+
T Consensus 1016 D~~pR~Vt~~~~lD~~tvagaDrfGNi 1042 (1205)
T KOG1898|consen 1016 DPVPRHVTALELLDYDTVAGADRFGNI 1042 (1205)
T ss_pred CCccceeeEEEEecCCceeeccccCcE
Confidence 222 22334444455555555443433
No 487
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=80.11 E-value=1.3e+02 Score=35.32 Aligned_cols=226 Identities=14% Similarity=0.174 Sum_probs=114.8
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCce--EEEecCC-CCCeEEEEEcCCC-CEEEEEEC--CCeEEEEECCCCeEEEEEcCC
Q 003445 27 KSSRVLVTGGEDHKVNLWAIGKPNA--ILSLSGH-TSGIDSVSFDSSE-VLVAAGAA--SGTIKLWDLEEAKIVRTLTGH 100 (819)
Q Consensus 27 ~~~~~Latgs~Dg~V~IWdl~~~~~--i~~l~~h-~~~V~~l~fspdg-~~Lasgs~--DG~I~IWDl~s~~~i~~l~~h 100 (819)
.++..++.+.++|.++...+..... ....-+. .....++.+..++ .+|+.|+. |+.+..|....-+.+..+. .
T Consensus 220 ~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N 298 (504)
T PF10433_consen 220 KDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-N 298 (504)
T ss_dssp TTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE---
T ss_pred CCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-C
Confidence 4566788899999999887754331 1222222 4556777776655 46667766 4556666655556666666 4
Q ss_pred CCCeEEEEEecC----CC------EEEEEE---CCCcEEEEECCCCeEEE----EEecC--CCCeEEEEEcC-CCCEEEE
Q 003445 101 RSNCISVDFHPF----GE------FFASGS---LDTNLKIWDIRKKGCIH----TYKGH--TRGVNAIRFTP-DGRWVVS 160 (819)
Q Consensus 101 ~~~I~sl~fsp~----g~------~Lasgs---~Dg~I~IwDi~t~~~i~----~~~~h--~~~I~sl~fsp-dg~~L~s 160 (819)
-++|..++..+. .. .|++++ .+|.+++..- |-... ..... -..++.+.... ++.+|+.
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~--Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~ 376 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN--GIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVL 376 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE--SBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec--cCCceeeeeeccCCCCceEEEEeeecCCCceEEEE
Confidence 578888888532 11 455554 4677887742 22222 11111 22344444332 2567777
Q ss_pred EECCCeEEEEECC---CCeEEEEEe--c---CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC-CCCee
Q 003445 161 GGEDNTVKLWDLT---AGKLLHDFK--C---HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE-TSGVR 231 (819)
Q Consensus 161 gs~Dg~I~IwDl~---t~~~i~~~~--~---h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~-~~~I~ 231 (819)
+..+.+ +++.+. ..+.+.+.. + ....+.+-.+. +..++=... ..|++.+...++....+... ...|.
T Consensus 377 S~~~~T-~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~ 452 (504)
T PF10433_consen 377 SFPNET-RVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIV 452 (504)
T ss_dssp EESSEE-EEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---S
T ss_pred EcCCce-EEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEE
Confidence 766544 454443 333332221 1 12223333332 334444443 45889998888877765443 34455
Q ss_pred EEEEeCCCCEEEEEECCCEEEEEecCCce
Q 003445 232 CLTFNPDGRTLLCGLHESLKVFSWEPIRC 260 (819)
Q Consensus 232 sl~fspdg~~Lasgs~d~I~Vwd~~~~~~ 260 (819)
+.+.. ++..+++...+.+..+.++....
T Consensus 453 ~a~~~-~~~v~v~~~~~~~~~~~~~~~~~ 480 (504)
T PF10433_consen 453 AASIN-DPQVLVALSGGELVYFELDDNKI 480 (504)
T ss_dssp EEEES-SSEEEEEE-TTEEEEEEEETTEE
T ss_pred EEEEC-CCEEEEEEeCCcEEEEEEECCce
Confidence 55554 34444555566788888776554
No 488
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=79.18 E-value=67 Score=39.55 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=21.7
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEEEEC
Q 003445 186 GQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (819)
Q Consensus 186 ~~I~sl~fspdg~~Lasgs~Dg~I~iwDl 214 (819)
-.|..+.++|+|.+|+..|..| |.|..+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 4688999999999999998766 444444
No 489
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=78.80 E-value=29 Score=37.54 Aligned_cols=114 Identities=15% Similarity=0.249 Sum_probs=69.9
Q ss_pred CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE------CCCeEEEEECCCCeEEEEEec-----CCCCeEE
Q 003445 122 DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG------EDNTVKLWDLTAGKLLHDFKC-----HEGQIQC 190 (819)
Q Consensus 122 Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs------~Dg~I~IwDl~t~~~i~~~~~-----h~~~I~s 190 (819)
...|++||..+.+...--.+-.+.|+.+.|..+.+.++.|. ....+..||+.+... ..+.. -.++|..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEE
Confidence 34699999988776655555667899999986666666654 345688999887643 23332 2367888
Q ss_pred EEEeC-CC-CEEEEEE-C--CCeEEEEECCCCeEEEE-eCCCCCCeeEEEEe
Q 003445 191 IDFHP-HE-FLLATGS-A--DRTVKFWDLETFELIGS-AGPETSGVRCLTFN 236 (819)
Q Consensus 191 l~fsp-dg-~~Lasgs-~--Dg~I~iwDl~~~~~l~~-~~~~~~~I~sl~fs 236 (819)
+.+.. |+ .+.+.|. . +..|..||-.++..+.. .-.....|..+.+-
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence 77743 33 3444443 2 33577777766665554 22223445555543
No 490
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=78.41 E-value=7.9 Score=29.35 Aligned_cols=31 Identities=29% Similarity=0.494 Sum_probs=26.3
Q ss_pred CCeEEEEEeCCC---CEEEEEECCCeEEEEECCC
Q 003445 186 GQIQCIDFHPHE---FLLATGSADRTVKFWDLET 216 (819)
Q Consensus 186 ~~I~sl~fspdg---~~Lasgs~Dg~I~iwDl~~ 216 (819)
+.|.++.|+|.. .+|+..-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999864 4888888889999999994
No 491
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=78.34 E-value=1.5e+02 Score=34.89 Aligned_cols=230 Identities=10% Similarity=0.074 Sum_probs=118.1
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCe--EEEEEcCC-CCCeEEEEEecCC-CEEEEEEC--CCcEEEEECCCCeEEEEEec
Q 003445 68 DSSEVLVAAGAASGTIKLWDLEEAK--IVRTLTGH-RSNCISVDFHPFG-EFFASGSL--DTNLKIWDIRKKGCIHTYKG 141 (819)
Q Consensus 68 spdg~~Lasgs~DG~I~IWDl~s~~--~i~~l~~h-~~~I~sl~fsp~g-~~Lasgs~--Dg~I~IwDi~t~~~i~~~~~ 141 (819)
..++..++.+..+|.+....+.... .....-+. .....++.+..+| .+|+.|+. |+.+..|....-+.+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~- 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP- 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence 3466788888999999998886543 12222222 4555677776555 37777776 4556666655555666665
Q ss_pred CCCCeEEEEEcCC----CC------EEEEEE---CCCeEEEEECCCCeEEE--E--EecCC--CCeEEEEEeC-CCCEEE
Q 003445 142 HTRGVNAIRFTPD----GR------WVVSGG---EDNTVKLWDLTAGKLLH--D--FKCHE--GQIQCIDFHP-HEFLLA 201 (819)
Q Consensus 142 h~~~I~sl~fspd----g~------~L~sgs---~Dg~I~IwDl~t~~~i~--~--~~~h~--~~I~sl~fsp-dg~~La 201 (819)
.-++|..+++... .. .|++++ .+|.++++. .|-... . ..... ..++.+.... ++.+|+
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv 375 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLV 375 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEEE
Confidence 3467888888531 11 556554 467888874 332222 1 11122 2344444322 245777
Q ss_pred EEECCCeEEEEECC---CCeEEEEeC--CC---CCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeeeeeccccceeE
Q 003445 202 TGSADRTVKFWDLE---TFELIGSAG--PE---TSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSD 273 (819)
Q Consensus 202 sgs~Dg~I~iwDl~---~~~~l~~~~--~~---~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~s~i~~ 273 (819)
.+..+.+ +++.+. ..+.+.... +. ...+.+-.+. +..++=-+..+|++.+....+....+.......-.
T Consensus 376 ~S~~~~T-~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~ 452 (504)
T PF10433_consen 376 LSFPNET-RVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIV 452 (504)
T ss_dssp EEESSEE-EEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---S
T ss_pred EEcCCce-EEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEE
Confidence 7766544 455553 344432221 11 1122222222 44555445667888887666555443332222222
Q ss_pred eEecCCCEEEEEEcCCeEEEEEecCCceee
Q 003445 274 LNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 274 l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~p 303 (819)
....++..++.+..++.+..+.++......
T Consensus 453 ~a~~~~~~v~v~~~~~~~~~~~~~~~~~~~ 482 (504)
T PF10433_consen 453 AASINDPQVLVALSGGELVYFELDDNKISV 482 (504)
T ss_dssp EEEESSSEEEEEE-TTEEEEEEEETTEEEE
T ss_pred EEEECCCEEEEEEeCCcEEEEEEECCceee
Confidence 233455667777778889999888877753
No 492
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=77.79 E-value=21 Score=37.75 Aligned_cols=142 Identities=18% Similarity=0.262 Sum_probs=82.1
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEEC-C--CcEEEEECCC--CeEEEEEe----cCCCCeEEEEEcC
Q 003445 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL-D--TNLKIWDIRK--KGCIHTYK----GHTRGVNAIRFTP 153 (819)
Q Consensus 83 I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~-D--g~I~IwDi~t--~~~i~~~~----~h~~~I~sl~fsp 153 (819)
-.+||+.+++....-....--|.+-.+-++|+.|.+|+. + ..+++++... ..+-..-. .....--.....+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 458999988764433334445556678899999999875 2 3477777543 11111100 1122333455567
Q ss_pred CCCEEEEEECCC-eEEEEECCC-CeEEEE--Eec------CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 003445 154 DGRWVVSGGEDN-TVKLWDLTA-GKLLHD--FKC------HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA 223 (819)
Q Consensus 154 dg~~L~sgs~Dg-~I~IwDl~t-~~~i~~--~~~------h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~ 223 (819)
||+.|+.|+... ...+|.-.. ...... +-. ...---.+...|+|++++.+..+ -.|||..+.+.+..+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeC
Confidence 999999988775 345555422 111111 110 01111245667999999998755 467799888776666
Q ss_pred CCC
Q 003445 224 GPE 226 (819)
Q Consensus 224 ~~~ 226 (819)
..-
T Consensus 206 P~l 208 (243)
T PF07250_consen 206 PDL 208 (243)
T ss_pred CCC
Confidence 543
No 493
>PRK05560 DNA gyrase subunit A; Validated
Probab=77.52 E-value=2e+02 Score=36.06 Aligned_cols=206 Identities=13% Similarity=0.044 Sum_probs=105.9
Q ss_pred CcEEEEEeCCCeEEEEEC---CC------CceE---EEecCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCC----
Q 003445 29 SRVLVTGGEDHKVNLWAI---GK------PNAI---LSLSGHTSGIDSVSFDS--SEVLVAAGAASGTIKLWDLEE---- 90 (819)
Q Consensus 29 ~~~Latgs~Dg~V~IWdl---~~------~~~i---~~l~~h~~~V~~l~fsp--dg~~Lasgs~DG~I~IWDl~s---- 90 (819)
...|+..+..|.+....+ .. |..+ ..+.....-|.++.+.. ++.+++..+.+|.++.-.+..
T Consensus 548 ~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~ 627 (805)
T PRK05560 548 HDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNI 627 (805)
T ss_pred CCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhc
Confidence 334555556677666543 22 2222 12222233455555552 667888889999999887643
Q ss_pred ---CeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC---------CeEEEEEecCCCCeEE-EEEcCCCCE
Q 003445 91 ---AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK---------KGCIHTYKGHTRGVNA-IRFTPDGRW 157 (819)
Q Consensus 91 ---~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t---------~~~i~~~~~h~~~I~s-l~fspdg~~ 157 (819)
|.....+.. .+.+..+........++..+..|.+..+.... |.....+.. ...|.. +.+.+++.+
T Consensus 628 ~r~G~~~ikLke-~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~ 705 (805)
T PRK05560 628 RSNGIIAINLDE-GDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQE 705 (805)
T ss_pred ccCCceeeccCC-CCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcE
Confidence 222233343 33444444444556677777788777765532 112222321 223333 334444447
Q ss_pred EEEEECCCeEEEEECCC-------CeEEEEE--ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCC
Q 003445 158 VVSGGEDNTVKLWDLTA-------GKLLHDF--KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETS 228 (819)
Q Consensus 158 L~sgs~Dg~I~IwDl~t-------~~~i~~~--~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~ 228 (819)
++..+..|.++...+.. ++-+..+ ....+.+..+........++..+.+|.+..++...-. .......
T Consensus 706 il~vTk~G~iKr~~l~e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI~---~~gR~a~ 782 (805)
T PRK05560 706 ILTVTENGYGKRTPVSEYRLQGRGGKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEIS---ITGRNTQ 782 (805)
T ss_pred EEEEEeCCeEEEEEHHHhhccCCCCCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHCC---ccccCCC
Confidence 88888899888776431 1222222 2222344333333333445556667777777765321 2222334
Q ss_pred CeeEEEEeCCC
Q 003445 229 GVRCLTFNPDG 239 (819)
Q Consensus 229 ~I~sl~fspdg 239 (819)
++..+.+..++
T Consensus 783 GVk~I~L~~~D 793 (805)
T PRK05560 783 GVRLIRLDEGD 793 (805)
T ss_pred CeeeEecCCCC
Confidence 56666665443
No 494
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=77.26 E-value=1.2e+02 Score=33.20 Aligned_cols=205 Identities=11% Similarity=0.079 Sum_probs=101.8
Q ss_pred ccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce---------------EEEecCCCCCeEEEEEcCCC-CEEEEE
Q 003445 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA---------------ILSLSGHTSGIDSVSFDSSE-VLVAAG 77 (819)
Q Consensus 14 ~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~---------------i~~l~~h~~~V~~l~fspdg-~~Lasg 77 (819)
.+...|+++...+.-+-+++.++....++.+++..-.. ....-+|..+....+..... ..++++
T Consensus 40 ~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~ 119 (302)
T smart00036 40 IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCV 119 (302)
T ss_pred cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEE
Confidence 35668999999986665666666666799999832111 11122455544444443322 233444
Q ss_pred ECCCeEEEEECCCC----eEEEEE---c-CCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCC--CeEEE-----EEe
Q 003445 78 AASGTIKLWDLEEA----KIVRTL---T-GHRSNCISVDFHPF--GEFFASGSLDTNLKIWDIRK--KGCIH-----TYK 140 (819)
Q Consensus 78 s~DG~I~IWDl~s~----~~i~~l---~-~h~~~I~sl~fsp~--g~~Lasgs~Dg~I~IwDi~t--~~~i~-----~~~ 140 (819)
....+|.++.+... .....+ . .-..++..+..+++ ...++.|+..+...++++.. ..... ...
T Consensus 120 A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~ 199 (302)
T smart00036 120 ALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSE 199 (302)
T ss_pred EcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccccccccccc
Confidence 55667777654322 111110 0 01123333333332 45677777653344555432 11000 011
Q ss_pred cCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE--EEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 003445 141 GHT-RGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLL--HDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF 217 (819)
Q Consensus 141 ~h~-~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i--~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~ 217 (819)
... .++..+.. +++.+|+ +. |....+.|....+.. ..+. -.....++++.. .+|+.-+ +..|.+|++.++
T Consensus 200 ~~~~~p~~i~~l-~~~e~Ll-c~-~~~~v~Vn~~G~~~~r~~~l~-w~~~p~~~~~~~--pyll~~~-~~~ievr~l~~~ 272 (302)
T smart00036 200 ETSLKPISVVQV-PRDEFLL-CY-DEFGVFVNLYGKRRSRNPILH-WEFMPESFAYHS--PYLLAFH-DNGIEIRSIKTG 272 (302)
T ss_pred ccccCceEEEEE-CCCeEEE-EE-CcEEEEEeCCCCccccceEEE-cCCcccEEEEEC--CEEEEEc-CCcEEEEECCCC
Confidence 111 33433343 3444444 33 344455555421211 1122 234556777763 4555554 455999999999
Q ss_pred eEEEEeCC
Q 003445 218 ELIGSAGP 225 (819)
Q Consensus 218 ~~l~~~~~ 225 (819)
+.++.+..
T Consensus 273 ~l~q~i~~ 280 (302)
T smart00036 273 ELLQELAD 280 (302)
T ss_pred ceEEEEec
Confidence 98888754
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=77.15 E-value=30 Score=37.46 Aligned_cols=94 Identities=17% Similarity=0.273 Sum_probs=61.1
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE------CCCeEEEEECCCCeEEEEEcC-----CCCCeEEE
Q 003445 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA------ASGTIKLWDLEEAKIVRTLTG-----HRSNCISV 107 (819)
Q Consensus 39 g~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs------~DG~I~IWDl~s~~~i~~l~~-----h~~~I~sl 107 (819)
..|++||..+.+....-.+-.+.|+.+.|..+.++++.|. ....+..||+.+.... .+.+ -.+++..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEEE
Confidence 4599999988877776666778999999997777777774 3567889998876542 2332 23678777
Q ss_pred EEec-CCC-EEEEEE-CC--CcEEEEECCCC
Q 003445 108 DFHP-FGE-FFASGS-LD--TNLKIWDIRKK 133 (819)
Q Consensus 108 ~fsp-~g~-~Lasgs-~D--g~I~IwDi~t~ 133 (819)
.+.. ++. +++.|. .+ ..|..||=.+.
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W 125 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSW 125 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCce
Confidence 7743 333 343433 22 23555554433
No 496
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=76.83 E-value=1.5e+02 Score=34.13 Aligned_cols=143 Identities=10% Similarity=0.132 Sum_probs=87.1
Q ss_pred CCCEEEEEECCCeEEEEECCCCe-----EEEEEcCCCCCeEEEEEec-----CCCEEEEEECCCcEEEEECCC--Ce---
Q 003445 70 SEVLVAAGAASGTIKLWDLEEAK-----IVRTLTGHRSNCISVDFHP-----FGEFFASGSLDTNLKIWDIRK--KG--- 134 (819)
Q Consensus 70 dg~~Lasgs~DG~I~IWDl~s~~-----~i~~l~~h~~~I~sl~fsp-----~g~~Lasgs~Dg~I~IwDi~t--~~--- 134 (819)
+...|++|+.+|.++||+..... .+... .-..+|..+..-. ....||+- .-..+.+|.+.. +.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEEecCCCccc
Confidence 34689999999999999985432 22222 2457788777643 12344443 456677777631 11
Q ss_pred ----EEEEEecCC--CCeEEEEEcC----C-CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEE
Q 003445 135 ----CIHTYKGHT--RGVNAIRFTP----D-GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATG 203 (819)
Q Consensus 135 ----~i~~~~~h~--~~I~sl~fsp----d-g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasg 203 (819)
.+..+..|. .....+++-| . ..+|+.-+.||.+.+|+-+.--....+.. ---...++|.+.-..++++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence 122222232 2334444444 2 35788899999999999664332222222 2223456788888889999
Q ss_pred ECCCeEEEEECC
Q 003445 204 SADRTVKFWDLE 215 (819)
Q Consensus 204 s~Dg~I~iwDl~ 215 (819)
+.+..+.-|...
T Consensus 193 sss~~l~~Yky~ 204 (418)
T PF14727_consen 193 SSSWTLECYKYQ 204 (418)
T ss_pred cCceeEEEecHH
Confidence 888888888753
No 497
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=76.34 E-value=20 Score=37.95 Aligned_cols=136 Identities=13% Similarity=0.174 Sum_probs=75.7
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCC---CeEEEEEe---cCCCCeEEEEEeC
Q 003445 125 LKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED---NTVKLWDLTA---GKLLHDFK---CHEGQIQCIDFHP 195 (819)
Q Consensus 125 I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~D---g~I~IwDl~t---~~~i~~~~---~h~~~I~sl~fsp 195 (819)
-.+||+.+++..-.--.....+.+-.+.+||++|.+|+.. ..+++++... .....+.. .....--+...-|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 4478988876543222233444555678899999998752 2477777543 11111110 0111223444567
Q ss_pred CCCEEEEEECCC-eEEEEECCC--CeEEEE--eC-----CCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCcee
Q 003445 196 HEFLLATGSADR-TVKFWDLET--FELIGS--AG-----PETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCH 261 (819)
Q Consensus 196 dg~~Lasgs~Dg-~I~iwDl~~--~~~l~~--~~-----~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~ 261 (819)
||+.|+.|+.+. +..+|.-.. ...... +. .....--.+...|+|++++.+..+. .|||+...+..
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s-~i~d~~~n~v~ 202 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS-IIYDYKTNTVV 202 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc-EEEeCCCCeEE
Confidence 999999998764 345555422 111111 11 0111223566689999988886554 78898877553
No 498
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=75.38 E-value=1.3e+02 Score=32.87 Aligned_cols=203 Identities=11% Similarity=0.115 Sum_probs=113.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECC-------CCeEEEEEcC-----CCCCeEEEEEecCCC------------EE
Q 003445 61 GIDSVSFDSSEVLVAAGAASGTIKLWDLE-------EAKIVRTLTG-----HRSNCISVDFHPFGE------------FF 116 (819)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~DG~I~IWDl~-------s~~~i~~l~~-----h~~~I~sl~fsp~g~------------~L 116 (819)
.-+.|+|+|.+.+-++....+...+||.. ....+-++.. .....+.+.|+.... .|
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35789999999888888888999999986 1123333332 123567777764322 36
Q ss_pred EEEECCCcEEEEECCCCeE-----EEEEe-cCCCCe-EEEEEc--CCCCEEEEEE-CCCeEEEEECCCCeEEE--EEecC
Q 003445 117 ASGSLDTNLKIWDIRKKGC-----IHTYK-GHTRGV-NAIRFT--PDGRWVVSGG-EDNTVKLWDLTAGKLLH--DFKCH 184 (819)
Q Consensus 117 asgs~Dg~I~IwDi~t~~~-----i~~~~-~h~~~I-~sl~fs--pdg~~L~sgs-~Dg~I~IwDl~t~~~i~--~~~~h 184 (819)
+.++.||+|.-|...-... ...+. .....| ..+++. ..+.+|+.+. ..++|.+||-.-.+... .|...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7888999999998532221 12222 112233 334444 3355666554 56889999865332211 11100
Q ss_pred C-----CC--eEE---------EEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC--CCCCeeEEEEeC------CCC
Q 003445 185 E-----GQ--IQC---------IDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP--ETSGVRCLTFNP------DGR 240 (819)
Q Consensus 185 ~-----~~--I~s---------l~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~--~~~~I~sl~fsp------dg~ 240 (819)
. .+ |.. ..-.+++..=+.|-.-|.|-+||+. +++++++.. .-...+.|+..| .|.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 0 00 111 1111222222233345789999976 677776632 233456777755 355
Q ss_pred EEEEEE-CCCEEEEEecCCceeeee
Q 003445 241 TLLCGL-HESLKVFSWEPIRCHDAV 264 (819)
Q Consensus 241 ~Lasgs-~d~I~Vwd~~~~~~~~~~ 264 (819)
+|+.-. ++.|.+||..+++....+
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeee
Confidence 555443 446999998877765443
No 499
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.21 E-value=59 Score=37.10 Aligned_cols=151 Identities=10% Similarity=0.142 Sum_probs=90.7
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCC---eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEE---
Q 003445 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEA---KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI--- 136 (819)
Q Consensus 63 ~~l~fspdg~~Lasgs~DG~I~IWDl~s~---~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i--- 136 (819)
+.+-|....+.|++ ...|.+.-|-+... -++..-....++|.++.|++|.+.+|+--.+.+|.+++....+..
T Consensus 26 ngvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 44555544444444 34555666655421 122222235679999999999999999999999999998543322
Q ss_pred -EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CeEEEEEecCCCCeEEEEEeCCCCEEEEEE--CCCeEEEE
Q 003445 137 -HTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA-GKLLHDFKCHEGQIQCIDFHPHEFLLATGS--ADRTVKFW 212 (819)
Q Consensus 137 -~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t-~~~i~~~~~h~~~I~sl~fspdg~~Lasgs--~Dg~I~iw 212 (819)
++.+..+..|..++|+.. .-++.-...| +-+|-+.. .+.+...+.|.-.|.-..|.++.+.+..++ ..+++.=+
T Consensus 105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf 182 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPF 182 (657)
T ss_pred HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccE
Confidence 233444556899999865 4455554444 34554432 334455566777788888888866544433 34444434
Q ss_pred ECCC
Q 003445 213 DLET 216 (819)
Q Consensus 213 Dl~~ 216 (819)
-+++
T Consensus 183 ~~~~ 186 (657)
T KOG2377|consen 183 HFRA 186 (657)
T ss_pred EEee
Confidence 4443
No 500
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=75.12 E-value=1.4e+02 Score=34.13 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=23.5
Q ss_pred CCeeEEEEeCCCCEEEEEECCC-EEEEEecC
Q 003445 228 SGVRCLTFNPDGRTLLCGLHES-LKVFSWEP 257 (819)
Q Consensus 228 ~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~~ 257 (819)
..|..+...+..+.|++-..++ |.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 4489999998888999887775 99999975
Done!