Query 003445
Match_columns 819
No_of_seqs 760 out of 3371
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 01:26:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003445.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003445hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.7E-41 5.8E-46 382.3 42.7 287 9-296 101-409 (410)
2 3ow8_A WD repeat-containing pr 100.0 1E-40 3.4E-45 363.8 43.2 290 8-297 24-320 (321)
3 3frx_A Guanine nucleotide-bind 100.0 3.3E-40 1.1E-44 358.6 45.9 297 1-299 1-318 (319)
4 1got_B GT-beta; complex (GTP-b 100.0 1.3E-39 4.4E-44 356.9 47.0 287 7-295 46-340 (340)
5 2ynn_A Coatomer subunit beta'; 100.0 4.6E-39 1.6E-43 346.9 43.5 290 7-298 4-302 (304)
6 2pbi_B Guanine nucleotide-bind 100.0 2.1E-38 7E-43 350.0 45.4 288 7-295 55-354 (354)
7 2xzm_R RACK1; ribosome, transl 100.0 2E-38 6.9E-43 347.6 42.7 290 7-299 12-341 (343)
8 4ery_A WD repeat-containing pr 100.0 1.5E-37 5.1E-42 334.5 45.0 289 8-297 15-311 (312)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.2E-37 4.1E-42 342.2 43.3 296 5-301 4-338 (345)
10 3iz6_a 40S ribosomal protein R 100.0 6.9E-39 2.4E-43 356.8 33.6 294 6-300 56-377 (380)
11 1erj_A Transcriptional repress 100.0 4.9E-37 1.7E-41 343.4 45.2 287 10-299 58-390 (393)
12 2hes_X YDR267CP; beta-propelle 100.0 7.9E-37 2.7E-41 333.6 44.2 288 7-298 5-328 (330)
13 4aow_A Guanine nucleotide-bind 100.0 1.8E-36 6E-41 327.2 46.2 293 7-300 29-339 (340)
14 3zwl_B Eukaryotic translation 100.0 6.7E-36 2.3E-40 325.0 45.5 294 5-301 21-349 (369)
15 3dm0_A Maltose-binding peripla 100.0 3.7E-36 1.3E-40 361.1 45.2 287 10-297 376-692 (694)
16 1sq9_A Antiviral protein SKI8; 100.0 8.4E-37 2.9E-41 338.0 35.8 296 1-300 1-397 (397)
17 1nr0_A Actin interacting prote 100.0 2.8E-36 9.5E-41 357.3 42.2 290 10-300 141-569 (611)
18 3ow8_A WD repeat-containing pr 100.0 4.1E-36 1.4E-40 327.3 39.8 246 9-255 73-319 (321)
19 4gqb_B Methylosome protein 50; 100.0 1.2E-36 4.2E-41 335.4 35.3 284 13-300 27-333 (344)
20 1k8k_C P40, ARP2/3 complex 41 100.0 7.2E-36 2.5E-40 326.6 38.6 289 11-300 3-363 (372)
21 1gxr_A ESG1, transducin-like e 100.0 6.4E-35 2.2E-39 313.7 44.6 285 8-297 43-336 (337)
22 1vyh_C Platelet-activating fac 100.0 4.2E-36 1.4E-40 338.2 36.8 247 8-255 142-409 (410)
23 4g56_B MGC81050 protein; prote 100.0 1.9E-36 6.4E-41 334.9 33.1 286 11-299 37-344 (357)
24 1nr0_A Actin interacting prote 100.0 1.1E-35 3.9E-40 352.1 41.9 292 7-301 50-400 (611)
25 1r5m_A SIR4-interacting protei 100.0 6.3E-35 2.2E-39 323.7 41.1 288 8-297 37-424 (425)
26 2ymu_A WD-40 repeat protein; u 100.0 1.2E-34 4E-39 337.7 45.0 282 7-295 294-577 (577)
27 3odt_A Protein DOA1; ubiquitin 100.0 2.3E-34 7.7E-39 306.5 41.3 286 7-303 9-301 (313)
28 2ynn_A Coatomer subunit beta'; 100.0 1.6E-34 5.6E-39 311.3 39.9 251 6-257 45-302 (304)
29 3dwl_C Actin-related protein 2 100.0 7.9E-37 2.7E-41 336.6 22.2 245 10-256 5-280 (377)
30 3k26_A Polycomb protein EED; W 100.0 1.4E-35 4.7E-40 322.7 31.6 285 11-297 13-365 (366)
31 3ei3_B DNA damage-binding prot 100.0 7.2E-35 2.5E-39 322.4 37.7 287 7-298 64-382 (383)
32 4gqb_B Methylosome protein 50; 100.0 1.1E-34 3.9E-39 319.7 37.8 243 13-258 79-332 (344)
33 3i2n_A WD repeat-containing pr 100.0 5E-35 1.7E-39 317.6 34.4 292 8-300 10-355 (357)
34 1got_B GT-beta; complex (GTP-b 100.0 2.6E-34 9E-39 314.7 40.1 247 6-254 87-340 (340)
35 2ymu_A WD-40 repeat protein; u 100.0 2.1E-33 7.2E-38 327.1 47.7 290 7-303 253-544 (577)
36 3v7d_B Cell division control p 100.0 4.9E-33 1.7E-37 315.8 46.4 288 7-303 112-426 (464)
37 3vl1_A 26S proteasome regulato 100.0 7.4E-35 2.5E-39 325.3 29.9 279 19-299 59-366 (420)
38 3frx_A Guanine nucleotide-bind 100.0 2.8E-33 9.5E-38 304.0 41.3 247 8-258 57-318 (319)
39 2pm9_A Protein WEB1, protein t 100.0 3.9E-35 1.3E-39 326.3 24.7 285 14-299 65-415 (416)
40 2pm7_B Protein transport prote 100.0 1.2E-33 4.3E-38 303.3 35.3 248 9-257 2-285 (297)
41 4ery_A WD repeat-containing pr 100.0 7.7E-33 2.6E-37 297.6 40.4 260 49-308 13-278 (312)
42 2pbi_B Guanine nucleotide-bind 100.0 5.3E-33 1.8E-37 306.7 39.3 247 7-254 97-354 (354)
43 3gre_A Serine/threonine-protei 100.0 6.9E-34 2.4E-38 320.2 32.9 288 6-295 52-437 (437)
44 4aez_A CDC20, WD repeat-contai 100.0 7.2E-33 2.5E-37 309.7 40.8 290 8-303 83-385 (401)
45 4e54_B DNA damage-binding prot 100.0 2.3E-34 7.8E-39 325.9 28.4 290 10-301 113-433 (435)
46 3v7d_B Cell division control p 100.0 3E-32 1E-36 309.2 44.5 286 6-298 152-463 (464)
47 3mkq_A Coatomer beta'-subunit; 100.0 1E-32 3.5E-37 334.8 43.2 295 6-301 3-305 (814)
48 1erj_A Transcriptional repress 100.0 1.4E-32 4.7E-37 307.3 40.4 239 18-258 125-390 (393)
49 2pm9_A Protein WEB1, protein t 100.0 2.4E-34 8.3E-39 319.9 24.5 286 16-302 12-341 (416)
50 1gxr_A ESG1, transducin-like e 100.0 7.2E-33 2.5E-37 297.6 34.8 284 15-302 8-300 (337)
51 3f3f_A Nucleoporin SEH1; struc 100.0 9.8E-33 3.4E-37 295.9 35.3 252 10-262 5-342 (351)
52 4a11_B DNA excision repair pro 100.0 1.8E-32 6E-37 302.7 38.0 295 8-303 35-370 (408)
53 1p22_A F-BOX/WD-repeat protein 100.0 1.3E-32 4.3E-37 311.2 37.6 277 12-302 129-418 (435)
54 2hes_X YDR267CP; beta-propelle 100.0 1.8E-32 6.1E-37 299.1 37.1 247 9-257 49-328 (330)
55 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.9E-32 6.5E-37 300.8 37.3 248 13-261 58-339 (345)
56 4g56_B MGC81050 protein; prote 100.0 3.2E-33 1.1E-37 309.0 31.2 246 10-258 88-344 (357)
57 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.8E-31 6.2E-36 302.0 45.9 283 8-304 110-397 (445)
58 1pgu_A Actin interacting prote 100.0 2.6E-32 9.1E-37 318.9 40.2 293 13-310 15-340 (615)
59 3vl1_A 26S proteasome regulato 100.0 1.2E-32 3.9E-37 307.5 35.1 279 18-298 98-419 (420)
60 3sfz_A APAF-1, apoptotic pepti 100.0 4.1E-32 1.4E-36 345.6 44.8 301 8-309 607-1003(1249)
61 2xzm_R RACK1; ribosome, transl 100.0 2.6E-32 9E-37 298.9 36.7 246 8-258 68-341 (343)
62 1yfq_A Cell cycle arrest prote 100.0 1E-32 3.4E-37 298.5 32.2 277 12-295 7-321 (342)
63 3jrp_A Fusion protein of prote 100.0 2.5E-32 8.5E-37 298.4 35.2 251 8-259 3-289 (379)
64 3iz6_a 40S ribosomal protein R 100.0 5E-33 1.7E-37 309.5 28.9 253 6-259 98-377 (380)
65 3dw8_B Serine/threonine-protei 100.0 2.9E-32 9.8E-37 306.5 33.7 279 15-297 27-445 (447)
66 3bg1_A Protein SEC13 homolog; 100.0 2.8E-33 9.6E-38 303.5 24.5 246 11-257 8-293 (316)
67 4gga_A P55CDC, cell division c 100.0 3.6E-31 1.2E-35 298.0 41.3 276 18-299 107-396 (420)
68 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.4E-31 2.5E-35 297.0 43.5 281 6-299 149-443 (445)
69 1pgu_A Actin interacting prote 100.0 5.1E-31 1.7E-35 308.0 43.5 290 7-299 151-573 (615)
70 1sq9_A Antiviral protein SKI8; 100.0 1E-31 3.4E-36 297.2 33.7 250 8-258 54-396 (397)
71 2pm7_B Protein transport prote 100.0 2.8E-31 9.7E-36 285.0 35.1 247 53-299 3-286 (297)
72 3mkq_A Coatomer beta'-subunit; 100.0 1.1E-30 3.9E-35 316.8 44.2 294 6-301 45-389 (814)
73 3sfz_A APAF-1, apoptotic pepti 100.0 9.3E-31 3.2E-35 333.2 45.3 301 6-308 647-1084(1249)
74 2aq5_A Coronin-1A; WD40 repeat 100.0 6.8E-32 2.3E-36 301.4 30.4 287 17-305 35-349 (402)
75 2j04_B YDR362CP, TAU91; beta p 100.0 7.7E-33 2.6E-37 322.2 23.4 287 10-300 201-519 (524)
76 3k26_A Polycomb protein EED; W 100.0 1.1E-31 3.9E-36 291.7 30.5 240 15-256 68-365 (366)
77 4ggc_A P55CDC, cell division c 100.0 4.3E-30 1.5E-34 274.5 41.6 274 19-298 28-315 (318)
78 3mmy_A MRNA export factor; mRN 100.0 4.4E-31 1.5E-35 286.9 32.6 289 4-296 27-344 (368)
79 1r5m_A SIR4-interacting protei 100.0 1.8E-30 6.1E-35 287.8 37.8 239 15-256 107-424 (425)
80 3zwl_B Eukaryotic translation 100.0 4.3E-30 1.5E-34 279.2 39.6 252 6-260 64-349 (369)
81 4h5i_A Guanine nucleotide-exch 100.0 1.2E-30 4E-35 289.4 33.5 278 16-298 14-343 (365)
82 3dm0_A Maltose-binding peripla 100.0 2.6E-30 9E-35 310.2 39.2 246 8-256 422-692 (694)
83 3ei3_B DNA damage-binding prot 100.0 8.9E-31 3.1E-35 289.5 32.2 240 13-257 115-382 (383)
84 4aez_A CDC20, WD repeat-contai 100.0 4.4E-30 1.5E-34 287.1 37.4 248 11-262 128-385 (401)
85 3jrp_A Fusion protein of prote 100.0 3.4E-30 1.2E-34 281.4 35.4 251 50-300 2-289 (379)
86 1k8k_C P40, ARP2/3 complex 41 100.0 2.1E-30 7.1E-35 283.2 33.6 250 8-259 44-363 (372)
87 3f3f_A Nucleoporin SEH1; struc 100.0 5.4E-30 1.8E-34 274.5 35.7 250 54-303 6-342 (351)
88 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-29 3.6E-34 270.4 37.6 247 7-262 50-301 (313)
89 3i2n_A WD repeat-containing pr 100.0 9.1E-31 3.1E-35 284.0 29.9 247 12-259 61-355 (357)
90 2xyi_A Probable histone-bindin 100.0 1.9E-30 6.5E-35 293.5 31.9 252 7-258 119-411 (430)
91 4aow_A Guanine nucleotide-bind 100.0 4.9E-29 1.7E-33 268.8 41.4 250 7-259 77-339 (340)
92 2oaj_A Protein SNI1; WD40 repe 100.0 5.8E-30 2E-34 316.6 38.7 162 13-178 55-246 (902)
93 3bg1_A Protein SEC13 homolog; 100.0 6.7E-31 2.3E-35 284.8 25.8 245 54-298 8-293 (316)
94 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.6E-30 2.6E-34 289.9 35.6 279 17-299 5-392 (450)
95 2aq5_A Coronin-1A; WD40 repeat 100.0 1.9E-30 6.4E-35 289.7 29.3 252 9-261 74-346 (402)
96 4gga_A P55CDC, cell division c 100.0 6.6E-29 2.3E-33 279.6 39.9 250 7-260 138-398 (420)
97 2oaj_A Protein SNI1; WD40 repe 100.0 4E-29 1.4E-33 309.1 40.6 285 11-300 12-385 (902)
98 4e54_B DNA damage-binding prot 100.0 9.8E-31 3.4E-35 296.1 22.7 255 5-260 153-433 (435)
99 3dw8_B Serine/threonine-protei 100.0 1.7E-29 5.9E-34 283.8 31.2 245 58-303 27-378 (447)
100 3gre_A Serine/threonine-protei 100.0 3.6E-30 1.2E-34 289.8 25.2 263 43-307 47-368 (437)
101 3jro_A Fusion protein of prote 100.0 4.1E-30 1.4E-34 312.1 27.5 250 9-259 2-287 (753)
102 4a11_B DNA excision repair pro 100.0 4E-29 1.4E-33 275.8 32.9 282 14-297 97-404 (408)
103 3lrv_A PRE-mRNA-splicing facto 100.0 3.2E-29 1.1E-33 274.1 29.7 265 28-302 47-337 (343)
104 3dwl_C Actin-related protein 2 100.0 2.5E-30 8.5E-35 284.6 20.5 242 55-298 7-281 (377)
105 3bws_A Protein LP49; two-domai 100.0 4E-28 1.4E-32 272.2 37.8 285 8-298 115-432 (433)
106 4h5i_A Guanine nucleotide-exch 100.0 4.1E-29 1.4E-33 277.1 28.1 243 11-258 68-344 (365)
107 3vu4_A KMHSV2; beta-propeller 100.0 1.5E-28 5.1E-33 271.2 31.7 280 8-300 11-338 (355)
108 1p22_A F-BOX/WD-repeat protein 100.0 1.7E-28 6E-33 277.2 32.4 242 6-260 163-417 (435)
109 4ggc_A P55CDC, cell division c 100.0 1.7E-27 5.9E-32 254.2 37.5 246 8-257 59-315 (318)
110 2xyi_A Probable histone-bindin 100.0 2.6E-28 9E-33 275.9 32.9 284 17-300 46-412 (430)
111 2j04_B YDR362CP, TAU91; beta p 100.0 1.2E-29 4.2E-34 295.2 21.2 242 15-257 132-428 (524)
112 1l0q_A Surface layer protein; 100.0 6.8E-27 2.3E-31 258.4 40.9 271 29-304 2-281 (391)
113 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.9E-28 1.7E-32 274.9 31.8 245 11-257 97-391 (450)
114 4gq1_A NUP37; propeller, trans 100.0 5.4E-29 1.9E-33 278.5 23.5 229 28-256 100-388 (393)
115 1yfq_A Cell cycle arrest prote 100.0 3.6E-28 1.2E-32 262.6 29.1 234 8-249 48-314 (342)
116 2j04_A TAU60, YPL007P, hypothe 100.0 6.3E-29 2.1E-33 285.9 22.6 260 14-297 13-296 (588)
117 1l0q_A Surface layer protein; 100.0 6E-26 2E-30 250.9 43.0 257 7-269 23-287 (391)
118 3jro_A Fusion protein of prote 100.0 6.7E-28 2.3E-32 292.7 29.5 248 53-300 3-287 (753)
119 3mmy_A MRNA export factor; mRN 100.0 8.2E-26 2.8E-30 245.3 34.8 258 44-305 24-311 (368)
120 4gq1_A NUP37; propeller, trans 99.9 2.9E-26 1E-30 256.3 28.1 277 17-296 16-387 (393)
121 2j04_A TAU60, YPL007P, hypothe 99.9 1.4E-27 4.9E-32 274.7 16.4 256 11-302 47-325 (588)
122 3lrv_A PRE-mRNA-splicing facto 99.9 1.9E-26 6.4E-31 252.1 23.8 229 67-300 44-294 (343)
123 3bws_A Protein LP49; two-domai 99.9 2.1E-24 7.3E-29 241.8 36.7 241 12-257 165-432 (433)
124 2w18_A PALB2, fancn, partner a 99.9 1.3E-24 4.3E-29 236.4 31.5 243 10-255 29-355 (356)
125 3vu4_A KMHSV2; beta-propeller 99.9 1.8E-24 6.1E-29 238.5 29.1 246 43-300 3-273 (355)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.2E-24 4.1E-29 245.6 27.1 284 17-306 63-395 (415)
127 2w18_A PALB2, fancn, partner a 99.9 1.9E-24 6.5E-29 235.0 24.1 175 38-214 156-355 (356)
128 1nir_A Nitrite reductase; hemo 99.9 1.6E-22 5.4E-27 236.4 40.1 294 8-306 171-522 (543)
129 3u4y_A Uncharacterized protein 99.9 3.4E-22 1.2E-26 215.5 33.7 277 23-302 4-308 (331)
130 3vgz_A Uncharacterized protein 99.9 2.5E-21 8.6E-26 209.8 39.6 270 15-288 39-334 (353)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 2E-22 6.7E-27 227.4 29.7 259 10-275 111-404 (415)
132 1ri6_A Putative isomerase YBHE 99.9 3.6E-21 1.2E-25 207.1 35.0 265 30-298 6-308 (343)
133 1nir_A Nitrite reductase; hemo 99.9 1.3E-21 4.3E-26 228.8 33.5 275 23-302 144-462 (543)
134 2ecf_A Dipeptidyl peptidase IV 99.9 3.2E-22 1.1E-26 240.8 29.1 278 16-298 36-413 (741)
135 1pby_B Quinohemoprotein amine 99.9 1.9E-21 6.4E-26 208.8 31.4 268 30-302 2-314 (337)
136 2ojh_A Uncharacterized protein 99.9 3.3E-21 1.1E-25 201.7 25.6 250 35-289 18-293 (297)
137 2ojh_A Uncharacterized protein 99.9 1.5E-21 5.1E-26 204.3 22.8 237 8-248 33-292 (297)
138 1xfd_A DIP, dipeptidyl aminope 99.9 8.4E-22 2.9E-26 236.2 22.0 278 18-299 18-394 (723)
139 2z3z_A Dipeptidyl aminopeptida 99.9 1.1E-20 3.8E-25 226.2 30.7 277 17-300 82-437 (706)
140 2ecf_A Dipeptidyl peptidase IV 99.9 1.2E-20 4.2E-25 226.9 29.5 277 18-300 110-461 (741)
141 3u4y_A Uncharacterized protein 99.9 1E-19 3.6E-24 195.9 33.8 249 9-260 33-307 (331)
142 1ri6_A Putative isomerase YBHE 99.9 9.7E-20 3.3E-24 195.9 33.2 242 12-257 33-308 (343)
143 3vgz_A Uncharacterized protein 99.9 1.8E-19 6.2E-24 195.1 35.0 230 16-248 88-334 (353)
144 1pby_B Quinohemoprotein amine 99.9 2.1E-19 7.2E-24 192.7 30.8 243 18-267 35-320 (337)
145 1k32_A Tricorn protease; prote 99.9 6E-20 2.1E-24 230.5 28.9 283 8-300 195-504 (1045)
146 1k32_A Tricorn protease; prote 99.8 1.2E-19 4.1E-24 227.9 30.8 275 15-300 294-639 (1045)
147 2oit_A Nucleoporin 214KDA; NH2 99.8 1.1E-19 3.9E-24 206.3 26.7 238 15-255 35-331 (434)
148 3o4h_A Acylamino-acid-releasin 99.8 1.1E-19 3.7E-24 213.0 27.4 268 16-298 21-313 (582)
149 1jmx_B Amine dehydrogenase; ox 99.8 3.3E-19 1.1E-23 192.5 28.5 276 21-302 4-329 (349)
150 3hfq_A Uncharacterized protein 99.8 2.2E-18 7.5E-23 187.5 35.2 266 37-303 14-324 (347)
151 3hfq_A Uncharacterized protein 99.8 2E-18 6.7E-23 187.9 32.3 245 12-257 35-317 (347)
152 2z3z_A Dipeptidyl aminopeptida 99.8 1.4E-18 5E-23 207.8 30.0 248 8-259 112-437 (706)
153 1xfd_A DIP, dipeptidyl aminope 99.8 5.5E-19 1.9E-23 211.7 26.1 276 9-287 50-429 (723)
154 1z68_A Fibroblast activation p 99.8 6.9E-20 2.4E-24 219.9 17.7 273 21-298 20-391 (719)
155 3scy_A Hypothetical bacterial 99.8 3E-17 1E-21 179.8 36.8 267 29-298 13-337 (361)
156 3scy_A Hypothetical bacterial 99.8 1.9E-17 6.4E-22 181.4 34.7 239 15-257 48-337 (361)
157 2oit_A Nucleoporin 214KDA; NH2 99.8 3.2E-19 1.1E-23 202.6 19.9 210 39-258 23-279 (434)
158 3pe7_A Oligogalacturonate lyas 99.8 3.4E-18 1.2E-22 188.3 26.4 292 6-300 20-384 (388)
159 4a5s_A Dipeptidyl peptidase 4 99.8 5.1E-18 1.7E-22 205.3 26.3 277 17-299 17-399 (740)
160 1jof_A Carboxy-CIS,CIS-muconat 99.8 9.9E-17 3.4E-21 176.8 34.2 270 31-301 4-344 (365)
161 3azo_A Aminopeptidase; POP fam 99.8 4.7E-17 1.6E-21 193.2 29.3 291 10-304 17-375 (662)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 8.9E-17 3E-21 177.2 28.8 242 15-258 38-342 (365)
163 3c5m_A Oligogalacturonate lyas 99.7 2.6E-17 8.7E-22 181.1 20.3 287 8-298 22-382 (396)
164 1q7f_A NHL, brain tumor CG1071 99.7 2.1E-15 7.1E-20 159.5 32.4 238 15-258 28-281 (286)
165 3pe7_A Oligogalacturonate lyas 99.7 3.9E-16 1.3E-20 171.8 27.8 265 43-308 14-339 (388)
166 2gop_A Trilobed protease; beta 99.7 1.8E-15 6.2E-20 164.0 32.2 271 6-303 5-335 (347)
167 1jmx_B Amine dehydrogenase; ox 99.7 4.5E-16 1.5E-20 167.8 26.1 211 9-226 34-335 (349)
168 3fvz_A Peptidyl-glycine alpha- 99.7 1.3E-15 4.6E-20 165.6 29.7 239 16-257 23-322 (329)
169 3o4h_A Acylamino-acid-releasin 99.7 1.3E-16 4.5E-21 186.8 23.3 235 9-258 56-314 (582)
170 3e5z_A Putative gluconolactona 99.7 2.6E-15 8.7E-20 159.9 30.9 247 6-260 17-289 (296)
171 1z68_A Fibroblast activation p 99.7 5.3E-17 1.8E-21 194.8 19.2 280 18-302 61-447 (719)
172 3azo_A Aminopeptidase; POP fam 99.7 1.8E-15 6E-20 179.7 26.3 251 9-262 60-374 (662)
173 4a5s_A Dipeptidyl peptidase 4 99.7 1.5E-15 5E-20 183.7 25.0 245 60-308 17-363 (740)
174 2z2n_A Virginiamycin B lyase; 99.7 3.9E-13 1.3E-17 141.6 39.4 283 11-301 9-298 (299)
175 3c5m_A Oligogalacturonate lyas 99.7 1.6E-15 5.4E-20 166.7 21.7 262 42-306 13-337 (396)
176 3fvz_A Peptidyl-glycine alpha- 99.7 1.7E-14 6E-19 156.7 29.6 239 59-299 23-323 (329)
177 2oiz_A Aromatic amine dehydrog 99.7 2E-14 6.9E-19 158.8 29.8 263 9-279 44-359 (361)
178 2oiz_A Aromatic amine dehydrog 99.7 1.8E-14 6E-19 159.3 28.9 259 37-302 29-340 (361)
179 2dg1_A DRP35, lactonase; beta 99.7 1.2E-13 4.3E-18 148.9 34.7 245 9-256 37-313 (333)
180 2dg1_A DRP35, lactonase; beta 99.7 3.3E-14 1.1E-18 153.4 28.7 275 17-298 6-314 (333)
181 1q7f_A NHL, brain tumor CG1071 99.7 1.8E-13 6.3E-18 144.4 33.6 236 57-298 27-280 (286)
182 1qks_A Cytochrome CD1 nitrite 99.6 8.4E-13 2.9E-17 154.6 39.3 275 28-305 166-545 (567)
183 2xdw_A Prolyl endopeptidase; a 99.6 5.8E-14 2E-18 168.8 30.0 242 15-259 123-416 (710)
184 3dsm_A Uncharacterized protein 99.6 3.4E-13 1.2E-17 146.7 32.3 269 37-311 15-315 (328)
185 2xdw_A Prolyl endopeptidase; a 99.6 2.3E-13 7.8E-18 163.6 34.0 273 26-300 81-416 (710)
186 3e5z_A Putative gluconolactona 99.6 2.5E-13 8.7E-18 144.4 30.6 246 49-302 17-290 (296)
187 2gop_A Trilobed protease; beta 99.6 7.6E-14 2.6E-18 151.2 26.0 222 17-256 59-330 (347)
188 3no2_A Uncharacterized protein 99.6 1.2E-13 4.1E-18 147.0 26.9 214 29-248 5-233 (276)
189 1rwi_B Serine/threonine-protei 99.6 7.1E-14 2.4E-18 145.8 24.3 241 18-260 25-267 (270)
190 3dsm_A Uncharacterized protein 99.6 6.5E-13 2.2E-17 144.5 30.0 245 17-270 44-314 (328)
191 2bkl_A Prolyl endopeptidase; m 99.6 4.4E-13 1.5E-17 160.8 28.5 276 25-305 76-404 (695)
192 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.8E-12 6.2E-17 138.0 28.7 243 10-257 11-299 (314)
193 2bkl_A Prolyl endopeptidase; m 99.5 2.7E-13 9.2E-18 162.6 23.7 241 14-260 118-400 (695)
194 1rwi_B Serine/threonine-protei 99.5 6.8E-13 2.3E-17 138.3 23.8 240 61-301 25-267 (270)
195 2qc5_A Streptogramin B lactona 99.5 4.2E-11 1.4E-15 126.0 37.8 274 14-296 17-298 (300)
196 2z2n_A Virginiamycin B lyase; 99.5 2.4E-11 8.4E-16 127.7 34.6 237 15-258 55-296 (299)
197 2mad_H Methylamine dehydrogena 99.5 4.9E-11 1.7E-15 132.5 37.4 272 24-304 28-356 (373)
198 3no2_A Uncharacterized protein 99.5 4.2E-12 1.4E-16 135.0 26.1 222 70-297 4-250 (276)
199 3g4e_A Regucalcin; six bladed 99.5 2E-11 6.9E-16 130.5 31.5 230 13-248 9-262 (297)
200 1yr2_A Prolyl oligopeptidase; 99.5 8.6E-12 2.9E-16 150.7 28.9 275 25-303 115-446 (741)
201 1yr2_A Prolyl oligopeptidase; 99.5 5.3E-12 1.8E-16 152.6 26.7 239 17-259 163-443 (741)
202 2ghs_A AGR_C_1268P; regucalcin 99.5 9.9E-11 3.4E-15 127.0 33.9 233 8-248 39-292 (326)
203 1qks_A Cytochrome CD1 nitrite 99.5 6.9E-11 2.4E-15 138.4 34.7 248 16-266 196-547 (567)
204 3dr2_A Exported gluconolactona 99.4 2.5E-11 8.4E-16 130.2 27.4 239 7-254 35-303 (305)
205 3sjl_D Methylamine dehydrogena 99.4 4.8E-11 1.6E-15 132.4 28.8 276 22-303 38-368 (386)
206 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.3E-10 4.4E-15 123.5 30.0 237 58-298 16-299 (314)
207 2mad_H Methylamine dehydrogena 99.4 7.3E-10 2.5E-14 123.0 37.1 250 10-269 61-363 (373)
208 3hrp_A Uncharacterized protein 99.4 2E-10 6.8E-15 129.1 32.8 234 17-255 131-408 (409)
209 2qc5_A Streptogramin B lactona 99.4 5.1E-10 1.7E-14 117.6 33.5 233 15-254 60-297 (300)
210 3c75_H MADH, methylamine dehyd 99.4 8.2E-11 2.8E-15 132.5 27.3 270 29-304 85-408 (426)
211 1xip_A Nucleoporin NUP159; bet 99.4 9.2E-12 3.1E-16 138.5 17.2 172 18-204 39-232 (388)
212 3hrp_A Uncharacterized protein 99.3 8E-10 2.7E-14 124.2 30.8 234 60-296 131-408 (409)
213 1xip_A Nucleoporin NUP159; bet 99.3 2E-11 6.8E-16 135.8 16.9 170 61-244 39-230 (388)
214 3sjl_D Methylamine dehydrogena 99.3 1E-09 3.6E-14 121.7 28.2 255 9-270 72-376 (386)
215 2qe8_A Uncharacterized protein 99.3 4.4E-10 1.5E-14 122.7 23.4 228 17-246 17-309 (343)
216 1yiq_A Quinohemoprotein alcoho 99.3 8.1E-10 2.8E-14 132.4 27.5 271 31-303 72-510 (689)
217 3iuj_A Prolyl endopeptidase; h 99.3 4E-10 1.4E-14 135.2 24.8 239 15-259 127-407 (693)
218 3iuj_A Prolyl endopeptidase; h 99.2 4.1E-10 1.4E-14 135.1 24.2 243 57-305 126-412 (693)
219 3g4e_A Regucalcin; six bladed 99.2 6.8E-09 2.3E-13 110.7 30.7 225 56-286 9-260 (297)
220 3dr2_A Exported gluconolactona 99.2 2E-09 6.8E-14 115.2 26.6 232 50-289 35-298 (305)
221 1kb0_A Quinohemoprotein alcoho 99.2 1.6E-09 5.3E-14 129.7 28.3 269 31-303 79-512 (677)
222 3q7m_A Lipoprotein YFGL, BAMB; 99.2 1.6E-08 5.3E-13 111.2 33.7 264 30-303 54-342 (376)
223 3q7m_A Lipoprotein YFGL, BAMB; 99.2 1.6E-08 5.4E-13 111.1 32.0 256 30-295 104-375 (376)
224 2hz6_A Endoplasmic reticulum t 99.2 4E-12 1.4E-16 140.9 2.4 202 29-240 9-216 (369)
225 3c75_H MADH, methylamine dehyd 99.2 2.8E-09 9.6E-14 120.0 25.3 255 9-270 112-416 (426)
226 1mda_H Methylamine dehydrogena 99.1 1.6E-09 5.4E-14 120.0 21.2 262 29-304 32-352 (368)
227 2ghs_A AGR_C_1268P; regucalcin 99.1 6.1E-08 2.1E-12 104.9 33.3 217 61-285 50-289 (326)
228 3hxj_A Pyrrolo-quinoline quino 99.1 5.7E-10 2E-14 119.4 16.8 268 17-301 60-327 (330)
229 3hxj_A Pyrrolo-quinoline quino 99.1 3E-10 1E-14 121.6 13.9 252 31-297 32-283 (330)
230 1kb0_A Quinohemoprotein alcoho 99.1 1.5E-08 5.3E-13 121.1 28.1 251 30-283 129-535 (677)
231 2ece_A 462AA long hypothetical 99.1 2.4E-08 8.3E-13 111.8 26.2 220 26-246 93-399 (462)
232 1yiq_A Quinohemoprotein alcoho 99.0 5.7E-08 1.9E-12 116.4 30.1 256 30-287 122-538 (689)
233 2qe8_A Uncharacterized protein 99.0 1.2E-08 4.1E-13 111.2 20.9 229 60-303 17-283 (343)
234 1kv9_A Type II quinohemoprotei 99.0 7.3E-08 2.5E-12 115.1 28.9 271 31-303 68-493 (668)
235 1npe_A Nidogen, entactin; glyc 99.0 8.3E-07 2.8E-11 92.6 33.1 222 17-240 36-263 (267)
236 2ece_A 462AA long hypothetical 99.0 4.1E-07 1.4E-11 101.9 31.5 246 40-286 44-399 (462)
237 1fwx_A Nitrous oxide reductase 98.9 1.5E-07 5.3E-12 108.7 25.6 270 31-304 17-437 (595)
238 2hz6_A Endoplasmic reticulum t 98.9 1.6E-10 5.6E-15 127.9 0.8 187 70-265 8-200 (369)
239 2iwa_A Glutamine cyclotransfer 98.9 3.6E-07 1.2E-11 96.2 25.7 202 50-257 10-237 (266)
240 1mda_H Methylamine dehydrogena 98.9 2.3E-08 7.9E-13 110.6 17.0 249 7-270 57-359 (368)
241 1fwx_A Nitrous oxide reductase 98.9 5.2E-08 1.8E-12 112.6 19.5 219 27-248 100-408 (595)
242 4a2l_A BT_4663, two-component 98.9 1E-05 3.6E-10 98.1 41.0 276 16-301 214-529 (795)
243 1w6s_A Methanol dehydrogenase 98.9 7.6E-07 2.6E-11 104.6 29.6 271 31-303 64-508 (599)
244 2ad6_A Methanol dehydrogenase 98.9 1.1E-06 3.7E-11 102.9 30.5 270 31-304 64-500 (571)
245 1npe_A Nidogen, entactin; glyc 98.8 2.7E-06 9.1E-11 88.8 30.3 229 72-302 2-242 (267)
246 3nol_A Glutamine cyclotransfer 98.8 6E-07 2E-11 93.8 24.4 198 51-255 33-252 (262)
247 4a2l_A BT_4663, two-component 98.8 1.6E-05 5.3E-10 96.6 40.3 278 17-305 263-578 (795)
248 2iwa_A Glutamine cyclotransfer 98.7 2.2E-06 7.4E-11 90.3 25.6 199 14-217 16-238 (266)
249 2fp8_A Strictosidine synthase; 98.7 5.3E-06 1.8E-10 89.1 28.4 233 60-298 19-313 (322)
250 1flg_A Protein (quinoprotein e 98.7 6.3E-06 2.2E-10 96.7 30.9 272 28-303 68-521 (582)
251 2fp8_A Strictosidine synthase; 98.7 8.6E-06 2.9E-10 87.4 28.3 239 12-257 14-313 (322)
252 1kv9_A Type II quinohemoprotei 98.7 5.1E-06 1.7E-10 99.1 28.3 236 31-267 119-498 (668)
253 3nol_A Glutamine cyclotransfer 98.7 4.3E-06 1.5E-10 87.3 24.2 190 8-205 32-244 (262)
254 3nok_A Glutaminyl cyclase; bet 98.6 3.2E-06 1.1E-10 88.4 22.6 196 50-254 44-261 (268)
255 2ad6_A Methanol dehydrogenase 98.6 8.5E-06 2.9E-10 95.3 28.5 235 30-268 116-505 (571)
256 2p4o_A Hypothetical protein; p 98.6 2.9E-05 9.9E-10 82.8 30.1 233 8-248 24-278 (306)
257 3mbr_X Glutamine cyclotransfer 98.6 1.3E-05 4.6E-10 82.8 26.2 199 50-255 10-231 (243)
258 3v9f_A Two-component system se 98.6 4E-05 1.4E-09 92.7 34.4 282 16-305 257-575 (781)
259 3v9f_A Two-component system se 98.6 6E-05 2E-09 91.3 35.7 280 17-305 211-531 (781)
260 3nok_A Glutaminyl cyclase; bet 98.5 2.3E-05 7.7E-10 81.9 24.9 182 14-204 50-253 (268)
261 3mbr_X Glutamine cyclotransfer 98.5 4.2E-05 1.4E-09 79.1 26.4 192 7-205 9-223 (243)
262 3v64_C Agrin; beta propeller, 98.5 0.00018 6.2E-09 78.5 31.5 233 61-296 35-273 (349)
263 1w6s_A Methanol dehydrogenase 98.4 2E-05 6.8E-10 92.6 25.0 233 32-268 124-514 (599)
264 3qqz_A Putative uncharacterize 98.4 6.4E-05 2.2E-09 78.5 26.1 201 11-214 21-251 (255)
265 1ijq_A LDL receptor, low-densi 98.4 0.00061 2.1E-08 73.1 34.8 226 73-300 3-240 (316)
266 1flg_A Protein (quinoprotein e 98.4 7.9E-05 2.7E-09 87.3 29.7 238 30-269 118-528 (582)
267 1k3i_A Galactose oxidase precu 98.4 9.7E-06 3.3E-10 96.4 21.7 267 21-287 190-530 (656)
268 2xe4_A Oligopeptidase B; hydro 98.4 0.00011 3.7E-09 88.8 30.2 190 61-255 175-398 (751)
269 2xbg_A YCF48-like protein; pho 98.4 0.00093 3.2E-08 72.0 34.7 277 6-295 26-319 (327)
270 3v64_C Agrin; beta propeller, 98.4 0.00023 7.8E-09 77.8 29.8 227 16-248 33-264 (349)
271 3v65_B Low-density lipoprotein 98.4 0.00024 8.3E-09 78.7 30.1 231 63-296 80-316 (386)
272 1ijq_A LDL receptor, low-densi 98.3 0.00087 3E-08 71.9 32.9 209 14-223 27-245 (316)
273 3qqz_A Putative uncharacterize 98.3 0.00013 4.5E-09 76.1 25.4 200 54-257 21-251 (255)
274 3v65_B Low-density lipoprotein 98.3 0.00022 7.7E-09 78.9 28.3 209 15-224 114-326 (386)
275 3p5b_L Low density lipoprotein 98.3 0.00093 3.2E-08 74.4 33.0 226 73-300 85-322 (400)
276 2p4o_A Hypothetical protein; p 98.3 0.00058 2E-08 72.6 29.9 201 50-256 23-241 (306)
277 2xe4_A Oligopeptidase B; hydro 98.3 5.3E-05 1.8E-09 91.5 24.2 192 18-214 175-398 (751)
278 3p5b_L Low density lipoprotein 98.3 0.0012 4.3E-08 73.3 33.0 222 12-234 107-338 (400)
279 3tc9_A Hypothetical hydrolase; 98.2 0.00038 1.3E-08 78.3 27.6 234 18-256 138-429 (430)
280 4hw6_A Hypothetical protein, I 98.2 0.00048 1.6E-08 77.6 27.0 235 17-256 139-432 (433)
281 3sov_A LRP-6, low-density lipo 98.2 0.00083 2.8E-08 72.4 27.7 222 79-301 11-241 (318)
282 3sov_A LRP-6, low-density lipo 98.1 0.0011 3.6E-08 71.5 26.7 205 18-223 36-245 (318)
283 3m0c_C LDL receptor, low-densi 98.0 0.005 1.7E-07 74.4 33.9 226 73-300 397-634 (791)
284 1k3i_A Galactose oxidase precu 98.0 3.6E-05 1.2E-09 91.4 14.8 239 64-302 190-501 (656)
285 3amr_A 3-phytase; beta-propell 98.0 0.0014 4.9E-08 71.0 25.4 190 70-264 39-271 (355)
286 2xbg_A YCF48-like protein; pho 97.9 0.0027 9.4E-08 68.3 26.9 222 16-249 79-314 (327)
287 3kya_A Putative phosphatase; s 97.9 0.0025 8.4E-08 72.7 27.4 241 18-260 140-478 (496)
288 3tc9_A Hypothetical hydrolase; 97.9 0.0024 8.2E-08 71.7 27.3 152 61-215 138-300 (430)
289 3s94_A LRP-6, low-density lipo 97.9 0.011 3.6E-07 69.7 33.5 202 16-218 39-245 (619)
290 3m0c_C LDL receptor, low-densi 97.9 0.0091 3.1E-07 72.2 32.6 214 31-248 397-621 (791)
291 2ism_A Putative oxidoreductase 97.8 0.0052 1.8E-07 67.0 26.8 230 7-246 21-333 (352)
292 3amr_A 3-phytase; beta-propell 97.8 0.0038 1.3E-07 67.7 24.6 190 30-224 41-272 (355)
293 4hw6_A Hypothetical protein, I 97.8 0.0042 1.4E-07 69.8 26.1 152 61-215 140-303 (433)
294 2xzh_A Clathrin heavy chain 1; 97.8 0.058 2E-06 57.7 32.7 263 38-309 48-343 (365)
295 3s94_A LRP-6, low-density lipo 97.8 0.068 2.3E-06 62.8 37.1 117 17-133 84-203 (619)
296 2p9w_A MAL S 1 allergenic prot 97.7 0.0043 1.5E-07 66.8 23.3 208 11-219 7-268 (334)
297 3a9g_A Putative uncharacterize 97.7 0.026 8.9E-07 61.5 29.5 237 5-246 17-330 (354)
298 2vpj_A Kelch-like protein 12; 97.7 0.002 7E-08 67.8 19.6 221 28-258 14-279 (301)
299 2vpj_A Kelch-like protein 12; 97.7 0.0026 9.1E-08 66.9 20.4 228 70-303 14-283 (301)
300 2xn4_A Kelch-like protein 2; s 97.6 0.0035 1.2E-07 66.1 20.4 221 29-259 16-278 (302)
301 2p9w_A MAL S 1 allergenic prot 97.6 0.01 3.6E-07 63.8 23.8 191 55-246 8-252 (334)
302 4a0p_A LRP6, LRP-6, low-densit 97.6 0.046 1.6E-06 64.3 31.8 228 73-303 8-242 (628)
303 1n7d_A LDL receptor, low-densi 97.6 0.00014 4.6E-09 87.2 9.8 209 17-226 406-624 (699)
304 1bpo_A Protein (clathrin); cla 97.6 0.16 5.5E-06 56.3 33.6 262 38-308 47-341 (494)
305 4a0p_A LRP6, LRP-6, low-densit 97.6 0.25 8.4E-06 58.1 41.6 157 145-302 390-553 (628)
306 3ii7_A Kelch-like protein 7; p 97.6 0.0045 1.6E-07 65.3 20.5 221 29-258 12-273 (306)
307 3ii7_A Kelch-like protein 7; p 97.5 0.01 3.5E-07 62.6 22.3 225 71-302 12-276 (306)
308 1n7d_A LDL receptor, low-densi 97.5 0.0003 1E-08 84.2 11.3 223 79-302 384-618 (699)
309 3ott_A Two-component system se 97.5 0.15 5.3E-06 60.9 35.3 228 16-260 21-263 (758)
310 2xn4_A Kelch-like protein 2; s 97.4 0.0091 3.1E-07 62.8 21.0 225 71-302 16-280 (302)
311 2g8s_A Glucose/sorbosone dehyd 97.3 0.083 2.8E-06 57.4 27.5 244 6-256 7-351 (353)
312 2xzh_A Clathrin heavy chain 1; 97.3 0.26 9E-06 52.7 30.3 208 23-236 73-310 (365)
313 3kya_A Putative phosphatase; s 97.3 0.1 3.4E-06 59.4 28.4 152 62-214 141-339 (496)
314 4asc_A Kelch repeat and BTB do 97.3 0.02 6.8E-07 60.7 21.2 208 31-247 7-252 (315)
315 1zgk_A Kelch-like ECH-associat 97.3 0.0058 2E-07 64.7 16.9 221 28-258 24-288 (308)
316 3das_A Putative oxidoreductase 97.2 0.3 1E-05 53.0 29.9 237 6-246 21-326 (347)
317 3ei3_A DNA damage-binding prot 97.2 0.38 1.3E-05 60.5 34.8 278 16-300 553-915 (1158)
318 2ism_A Putative oxidoreductase 97.1 0.13 4.5E-06 55.7 26.1 142 59-205 30-222 (352)
319 1zgk_A Kelch-like ECH-associat 97.1 0.021 7.2E-07 60.3 19.2 225 70-302 24-291 (308)
320 3sre_A PON1, serum paraoxonase 97.0 0.035 1.2E-06 60.6 20.1 199 55-257 45-296 (355)
321 3s25_A Hypothetical 7-bladed b 97.0 0.31 1.1E-05 51.7 27.2 244 26-296 23-291 (302)
322 1bpo_A Protein (clathrin); cla 97.0 0.68 2.3E-05 51.4 31.1 207 23-235 72-308 (494)
323 2woz_A Kelch repeat and BTB do 97.0 0.053 1.8E-06 57.4 20.8 183 31-219 18-234 (318)
324 4asc_A Kelch repeat and BTB do 96.9 0.084 2.9E-06 55.8 22.2 210 73-288 7-253 (315)
325 3a9g_A Putative uncharacterize 96.9 0.54 1.8E-05 50.9 29.1 224 59-286 28-330 (354)
326 3ott_A Two-component system se 96.8 1.3 4.6E-05 52.7 36.0 224 17-253 63-303 (758)
327 2woz_A Kelch repeat and BTB do 96.8 0.1 3.5E-06 55.1 21.7 211 73-288 18-263 (318)
328 3sre_A PON1, serum paraoxonase 96.6 0.059 2E-06 58.8 18.3 193 18-215 51-297 (355)
329 2uvk_A YJHT; unknown function, 96.5 0.036 1.2E-06 59.7 15.9 227 28-263 19-348 (357)
330 3ei3_A DNA damage-binding prot 96.5 3 0.0001 52.4 35.6 220 73-298 708-999 (1158)
331 1xi4_A Clathrin heavy chain; a 96.4 0.18 6.2E-06 63.5 22.0 262 38-308 47-341 (1630)
332 2uvk_A YJHT; unknown function, 96.3 0.12 4E-06 55.6 17.9 230 70-303 19-347 (357)
333 3sbq_A Nitrous-oxide reductase 96.2 0.67 2.3E-05 52.9 23.5 253 31-286 72-453 (638)
334 3pbp_A Nucleoporin NUP82; beta 96.1 0.26 9E-06 54.6 19.4 142 68-212 29-208 (452)
335 2be1_A Serine/threonine-protei 96.0 0.031 1.1E-06 60.6 11.4 189 30-221 11-236 (339)
336 3pbp_A Nucleoporin NUP82; beta 96.0 0.53 1.8E-05 52.1 21.0 140 28-170 31-208 (452)
337 3sbq_A Nitrous-oxide reductase 95.8 0.68 2.3E-05 52.8 21.3 226 73-299 72-409 (638)
338 2zwa_A Leucine carboxyl methyl 95.8 0.24 8.4E-06 58.8 19.0 192 28-220 397-639 (695)
339 2zwa_A Leucine carboxyl methyl 95.6 0.22 7.5E-06 59.3 17.6 192 69-261 396-639 (695)
340 3das_A Putative oxidoreductase 95.3 4 0.00014 44.1 28.3 229 55-286 27-326 (347)
341 3s25_A Hypothetical 7-bladed b 95.2 3.8 0.00013 43.2 24.9 216 69-307 23-264 (302)
342 2g8s_A Glucose/sorbosone dehyd 94.9 5.1 0.00018 43.0 26.1 140 61-202 19-214 (353)
343 2be1_A Serine/threonine-protei 94.5 0.33 1.1E-05 52.5 13.4 114 113-226 10-140 (339)
344 1cru_A Protein (soluble quinop 94.5 1.8 6E-05 48.6 20.0 116 5-121 15-163 (454)
345 1xi4_A Clathrin heavy chain; a 94.4 0.88 3E-05 57.5 18.3 198 28-230 76-303 (1630)
346 1cru_A Protein (soluble quinop 94.4 2.1 7.1E-05 48.0 20.3 105 59-163 26-163 (454)
347 1tl2_A L10, protein (tachylect 94.3 1.8 6.1E-05 43.8 17.1 169 29-208 4-202 (236)
348 1tl2_A L10, protein (tachylect 93.4 0.56 1.9E-05 47.4 11.6 142 17-168 41-204 (236)
349 3qhy_B Beta-lactamase inhibito 92.2 1.6 5.5E-05 45.6 14.0 221 61-297 25-245 (282)
350 3b7f_A Glycosyl hydrolase, BNR 92.1 15 0.00051 39.6 23.5 183 16-203 54-296 (394)
351 2wg3_C Hedgehog-interacting pr 90.7 24 0.00083 39.4 32.3 246 7-256 4-370 (463)
352 3qhy_B Beta-lactamase inhibito 89.7 5.4 0.00018 41.5 15.0 222 18-257 25-246 (282)
353 3q6k_A 43.2 kDa salivary prote 88.7 30 0.001 37.6 23.2 181 40-245 124-341 (381)
354 3b7f_A Glycosyl hydrolase, BNR 88.3 30 0.001 37.1 24.3 202 29-237 22-287 (394)
355 3no0_A DNA gyrase subunit A; D 81.2 53 0.0018 33.8 20.2 195 17-216 24-246 (276)
356 3uc1_A DNA gyrase subunit A; D 80.8 61 0.0021 34.3 21.0 195 18-216 43-279 (327)
357 1suu_A DNA gyrase subunit A; t 80.1 62 0.0021 33.9 24.5 186 28-216 7-231 (312)
358 3uc1_A DNA gyrase subunit A; D 79.8 51 0.0017 34.9 16.9 156 16-173 94-278 (327)
359 2wg3_C Hedgehog-interacting pr 76.4 1E+02 0.0034 34.3 27.7 104 61-164 15-159 (463)
360 3no0_A DNA gyrase subunit A; D 69.5 1.1E+02 0.0036 31.5 18.2 154 16-173 67-245 (276)
361 1sqj_A OXG-RCBH, oligoxylogluc 68.2 2E+02 0.0068 34.2 26.3 147 16-164 14-190 (789)
362 3q6k_A 43.2 kDa salivary prote 68.1 1.4E+02 0.0047 32.3 19.2 134 165-298 123-306 (381)
363 4fhn_B Nucleoporin NUP120; pro 63.6 2.3E+02 0.0077 35.3 19.9 37 146-182 240-276 (1139)
364 3l6v_A GYRA, DNA gyrase subuni 60.2 1.9E+02 0.0064 31.1 24.3 143 28-173 6-179 (370)
365 1zi0_A DNA gyrase subunit A; b 58.4 1.8E+02 0.006 30.3 23.9 186 28-216 2-226 (307)
366 1suu_A DNA gyrase subunit A; t 57.4 1.8E+02 0.0063 30.2 24.0 185 69-257 6-231 (312)
367 4hvt_A Ritya.17583.B, post-pro 57.1 2.9E+02 0.01 32.4 24.4 220 21-244 133-412 (711)
368 1zi0_A DNA gyrase subunit A; b 51.1 2.3E+02 0.0078 29.4 23.0 186 28-216 52-277 (307)
369 3zwu_A Alkaline phosphatase PH 49.6 1.8E+02 0.0061 33.5 14.3 59 61-119 477-548 (592)
370 4gq2_M Nucleoporin NUP120; bet 48.0 4.5E+02 0.015 31.9 23.1 38 145-182 237-274 (950)
371 4a9v_A PHOX; hydrolase, beta-p 47.5 2E+02 0.0069 32.9 14.0 61 60-120 476-549 (592)
372 3kci_A Probable E3 ubiquitin-p 46.8 2.9E+02 0.0099 29.3 28.6 182 30-215 11-240 (389)
373 4fhn_B Nucleoporin NUP120; pro 43.3 1.7E+02 0.0057 36.5 13.9 36 188-223 240-275 (1139)
374 1wp5_A Topoisomerase IV; broke 40.6 3.4E+02 0.012 28.3 23.7 186 28-216 4-225 (323)
375 4gq2_M Nucleoporin NUP120; bet 37.7 6.2E+02 0.021 30.6 25.1 37 187-223 237-273 (950)
376 3f7f_A Nucleoporin NUP120; nuc 36.2 1.3E+02 0.0044 35.5 10.3 36 146-183 224-259 (729)
377 4hvt_A Ritya.17583.B, post-pro 34.7 6.1E+02 0.021 29.6 25.7 193 62-259 131-383 (711)
378 3l6v_A GYRA, DNA gyrase subuni 30.5 5.2E+02 0.018 27.5 22.8 113 16-131 45-179 (370)
379 3zwu_A Alkaline phosphatase PH 28.0 1.3E+02 0.0043 34.7 8.4 59 188-246 478-549 (592)
380 1wp5_A Topoisomerase IV; broke 27.1 5.5E+02 0.019 26.7 24.2 196 18-216 40-277 (323)
381 1zvt_A Topoisomerase IV subuni 26.9 3.1E+02 0.01 27.6 10.4 141 73-216 4-163 (256)
382 4a9v_A PHOX; hydrolase, beta-p 25.9 1.8E+02 0.0062 33.3 9.1 60 187-246 477-549 (592)
383 1zvt_A Topoisomerase IV subuni 25.2 4.5E+02 0.015 26.3 11.3 141 30-173 3-162 (256)
384 2zux_A YESW protein; beta-prop 23.7 8.5E+02 0.029 27.7 26.1 268 15-297 177-531 (591)
385 3dd7_B PHD, prevent HOST death 23.2 47 0.0016 20.8 1.9 19 651-669 5-23 (23)
386 1l9l_A Granulysin; saposin fol 20.5 57 0.0019 26.5 2.6 46 718-763 5-62 (74)
387 3f7f_A Nucleoporin NUP120; nuc 20.1 1.4E+02 0.0047 35.2 6.7 37 61-99 223-259 (729)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-41 Score=382.29 Aligned_cols=287 Identities=27% Similarity=0.502 Sum_probs=273.2
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (819)
...+.+|.+.|+|++|+| ++.+|++|+.||.|+|||+.+++....+.+|...|.+++|+|++++|++|+.||+|++||+
T Consensus 101 ~~~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp SCEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred eEeecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 356889999999999999 6779999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003445 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVK 168 (819)
Q Consensus 89 ~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~ 168 (819)
.+++.+..+.+|...|.+++|+|++++|++|+.|+.|++||++++.++..+.+|...|.++.|+|+|.+|++|+.||.|+
T Consensus 180 ~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 180 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEeCC--------------------CCEEEEEECCCeEEEEECCCCeEEEEeCCCCC
Q 003445 169 LWDLTAGKLLHDFKCHEGQIQCIDFHPH--------------------EFLLATGSADRTVKFWDLETFELIGSAGPETS 228 (819)
Q Consensus 169 IwDl~t~~~i~~~~~h~~~I~sl~fspd--------------------g~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~ 228 (819)
+||+.++++...+..|...|.+++|+|+ +.+|++|+.|+.|++||+++++++..+.+|..
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~ 339 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 339 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence 9999999999999999999999999996 67999999999999999999999999999999
Q ss_pred CeeEEEEeCCCCEEEEEECCC-EEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEe
Q 003445 229 GVRCLTFNPDGRTLLCGLHES-LKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 296 (819)
Q Consensus 229 ~I~sl~fspdg~~Lasgs~d~-I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~l 296 (819)
.|.+++|+|+|++|++|+.|+ |++||+.+.++...+..+...+..+.+ +++.+|++|+.|+.|+||++
T Consensus 340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999998875 999999999999888888888888887 67889999999999999986
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-40 Score=363.76 Aligned_cols=290 Identities=23% Similarity=0.410 Sum_probs=268.8
Q ss_pred eEEEEeccCCCEEEEEEeeC---CCcEEEEEeCCCeEEEEECCCCce--EEEecCCCCCeEEEEEcCCCCEEEEEECCCe
Q 003445 8 KLQEFVAHSSTVNCLKIGRK---SSRVLVTGGEDHKVNLWAIGKPNA--ILSLSGHTSGIDSVSFDSSEVLVAAGAASGT 82 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~---~~~~Latgs~Dg~V~IWdl~~~~~--i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~ 82 (819)
.+..+++|.+.|++++|+|+ ++.+|++|+.|++|+||++..+.. ...+.+|...|.+++|++++.++++++.||+
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 34567799999999999984 356899999999999999976653 4568899999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 003445 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG 162 (819)
Q Consensus 83 I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs 162 (819)
|++||+.+++.+..+..|...+.+++|+|++++|++|+.||.|++||+++++....+..|...|.+++|+|+|++|++|+
T Consensus 104 i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~ 183 (321)
T 3ow8_A 104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGA 183 (321)
T ss_dssp EEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEE
Q 003445 163 EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL 242 (819)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~L 242 (819)
.||.|++||+++++.+..+.+|...|.+++|+|++.+|++|+.||.|++||+++++.+..+..|...|.+++|+|+|.+|
T Consensus 184 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l 263 (321)
T 3ow8_A 184 IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF 263 (321)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECC-CEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEec
Q 003445 243 LCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 243 asgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld 297 (819)
++++.| .+++||+.+.++...+..+...+..+.+ +++.+|++++.|+.|+|||+.
T Consensus 264 ~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 264 VSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999877 5999999999999888878788888877 688999999999999999964
No 3
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.3e-40 Score=358.60 Aligned_cols=297 Identities=23% Similarity=0.438 Sum_probs=262.7
Q ss_pred CCCcccce-EEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC-----CceEEEecCCCCCeEEEEEcCCCCEE
Q 003445 1 MTTKRAYK-LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-----PNAILSLSGHTSGIDSVSFDSSEVLV 74 (819)
Q Consensus 1 M~tkr~~k-l~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~-----~~~i~~l~~h~~~V~~l~fspdg~~L 74 (819)
|..++... ...|.+|.+.|++++|+|+++++|++|+.|++|++|++.. +..+..+.+|...|.+++|+|++++|
T Consensus 1 ~~~~~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l 80 (319)
T 3frx_A 1 MASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYA 80 (319)
T ss_dssp ---CEEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred CCcceEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEE
Confidence 34444343 4489999999999999997778999999999999999853 34567889999999999999999999
Q ss_pred EEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC
Q 003445 75 AAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD 154 (819)
Q Consensus 75 asgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspd 154 (819)
++|+.||+|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.|+.|++||++ +.++..+.+|...|.+++|.|.
T Consensus 81 ~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~ 159 (319)
T 3frx_A 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPN 159 (319)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC
T ss_pred EEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccC
Confidence 999999999999999999999999999999999999999999999999999999996 5677888899999999999984
Q ss_pred ------CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCC
Q 003445 155 ------GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETS 228 (819)
Q Consensus 155 ------g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~ 228 (819)
+..|++++.|+.|++||+++++....+.+|...|.+++|+|++.+|++|+.||.|++||+.+++.+..+..+ .
T Consensus 160 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~ 238 (319)
T 3frx_A 160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-D 238 (319)
T ss_dssp ------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-S
T ss_pred CCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-C
Confidence 458999999999999999999999999999999999999999999999999999999999999998888754 6
Q ss_pred CeeEEEEeCCCCEEEEEECCCEEEEEecCCceeeeeecc--------ccceeEeEe-cCCCEEEEEEcCCeEEEEEecCC
Q 003445 229 GVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVG--------WSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDIS 299 (819)
Q Consensus 229 ~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~--------~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~ 299 (819)
.|.+++|+|++.+|+++..+++++|++++......+... ...+..+.+ ++|++|++|+.|+.|+||++.++
T Consensus 239 ~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 799999999999999999999999999987665544221 223444544 89999999999999999999864
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.3e-39 Score=356.88 Aligned_cols=287 Identities=25% Similarity=0.429 Sum_probs=266.2
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
.....+.+|.+.|++++|+| ++++|++|+.||.|+|||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|++|
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred hhheeecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34568999999999999999 67899999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC----eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 003445 87 DLEEA----KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG 162 (819)
Q Consensus 87 Dl~s~----~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs 162 (819)
|+.+. .....+.+|...|.++.|++++. +++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++|+
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~ 203 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEe
Confidence 99865 46677889999999999998764 88999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC--CCCeeEEEEeCCCC
Q 003445 163 EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE--TSGVRCLTFNPDGR 240 (819)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~--~~~I~sl~fspdg~ 240 (819)
.||.|++||+++++.+..+.+|...|.+++|+|++.+|++|+.||+|++||+++++.+..+..+ ...|.+++|+|+|+
T Consensus 204 ~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 283 (340)
T 1got_B 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283 (340)
T ss_dssp TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999999999888776533 35799999999999
Q ss_pred EEEEEECC-CEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEE
Q 003445 241 TLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (819)
Q Consensus 241 ~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ 295 (819)
+|++|+.+ .+++||+...+....+..+...+..+.+ +++.+|++|+.|+.|+||+
T Consensus 284 ~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999887 5999999998888888888888888877 6889999999999999996
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.6e-39 Score=346.90 Aligned_cols=290 Identities=21% Similarity=0.355 Sum_probs=260.6
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
...+.|.+|.+.|++++|+| ++.+|++|+.||.|++||+.++..+..+..|..+|.+++|++++++|++|+.|+.|++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCEEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred eeEEeecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 34567999999999999999 67889999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcC-CCCEEEEEECC
Q 003445 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTP-DGRWVVSGGED 164 (819)
Q Consensus 87 Dl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~-~~i~~~~~h~~~I~sl~fsp-dg~~L~sgs~D 164 (819)
|+.+++.+..+.+|...|.+++|+|++++|++|+.||+|++||++++ .....+.+|...|.+++|+| ++.+|++|+.|
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999877 55677889999999999999 67899999999
Q ss_pred CeEEEEECCCCeEEEEEe-cCCCCeEEEEEeC--CCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCE
Q 003445 165 NTVKLWDLTAGKLLHDFK-CHEGQIQCIDFHP--HEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRT 241 (819)
Q Consensus 165 g~I~IwDl~t~~~i~~~~-~h~~~I~sl~fsp--dg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~ 241 (819)
+.|++||++++.....+. .|...+..+.|+| ++.+|++|+.|++|++||+++++++..+.+|...|.+++|+|++.+
T Consensus 163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 242 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242 (304)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCE
Confidence 999999998877665554 4567899999987 6789999999999999999999999999999999999999999999
Q ss_pred EEEEECC-CEEEEEecCCceeeeeeccccceeEeEe-cCCC--EEEEEEcCCeEEEEEecC
Q 003445 242 LLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGK--LLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 242 Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~--lLa~~~~Dg~V~IW~ld~ 298 (819)
|++|+.| .|++||..+.++...+..+...+..+.+ +++. ++++|+.| .+.+|++..
T Consensus 243 l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 243 IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred EEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence 9999877 5999999999999888888777777774 5553 46666554 577777654
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.1e-38 Score=350.02 Aligned_cols=288 Identities=20% Similarity=0.364 Sum_probs=264.7
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
.....+.+|.+.|+|++|+| ++++|++|+.||+|+|||..+++....+..|...|.+++|+|++.+|++|+.|+.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred EEEEEecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 34678999999999999999 66899999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC------eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC--CCCEE
Q 003445 87 DLEEA------KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP--DGRWV 158 (819)
Q Consensus 87 Dl~s~------~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fsp--dg~~L 158 (819)
++... .....+.+|...|.+++|+|++.+|++++.|++|++||+++++++..+.+|...|.+++|+| +|++|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 98643 33456778999999999999999999999999999999999999999999999999999987 57899
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC--CCCeeEEEEe
Q 003445 159 VSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE--TSGVRCLTFN 236 (819)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~--~~~I~sl~fs 236 (819)
++|+.||.|++||+++++++..+..|...|.+++|+|++.+|++|+.|++|++||++.++.+..+..+ ...+.+++|+
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS 293 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999998887766543 3478999999
Q ss_pred CCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEE
Q 003445 237 PDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (819)
Q Consensus 237 pdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ 295 (819)
|+|.+|++|+.+ .|++||+.+.+....+..+...+..+.+ +++++|++|+.|+.|+||+
T Consensus 294 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 294 LSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999877 6999999998888888888888888877 7899999999999999995
No 7
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2e-38 Score=347.56 Aligned_cols=290 Identities=22% Similarity=0.399 Sum_probs=249.2
Q ss_pred ceEEEEeccCCCEEEEEE-----eeCCCcEEEEEeCCCeEEEEECCCC-------ceEEEecCCCCCeEEEEEcCCCCEE
Q 003445 7 YKLQEFVAHSSTVNCLKI-----GRKSSRVLVTGGEDHKVNLWAIGKP-------NAILSLSGHTSGIDSVSFDSSEVLV 74 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~laf-----sp~~~~~Latgs~Dg~V~IWdl~~~-------~~i~~l~~h~~~V~~l~fspdg~~L 74 (819)
.....|.+|.+.|++++| ++.++.+|++|+.|++|++||+... .....+.+|...|.+++|+|++.++
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 345689999999999999 6657789999999999999998643 4567788999999999999999999
Q ss_pred EEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe---cCCCCeEEEEE
Q 003445 75 AAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK---GHTRGVNAIRF 151 (819)
Q Consensus 75 asgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~---~h~~~I~sl~f 151 (819)
++|+.||+|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+... ...... .|...|.+++|
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999844 343333 68889999999
Q ss_pred cCCC----------CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC-CeEE
Q 003445 152 TPDG----------RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET-FELI 220 (819)
Q Consensus 152 spdg----------~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~-~~~l 220 (819)
+|++ .+|++++.||.|++|| ..++....+.+|...|.+++|+|+|.+|++|+.||.|++||+.. ....
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~ 249 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ 249 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCS
T ss_pred ccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 9987 7999999999999999 45677888899999999999999999999999999999999944 3333
Q ss_pred EEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceee--eee-----------ccccceeEeEe-cCCCEEEEEE
Q 003445 221 GSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHD--AVD-----------VGWSRLSDLNV-HEGKLLGCSY 286 (819)
Q Consensus 221 ~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~--~~~-----------~~~s~i~~l~~-~dg~lLa~~~ 286 (819)
..+ .+...|.+++|+|++.+++++.++++++|++.+.+... .+. .+...+..+.+ ++|++|++|+
T Consensus 250 ~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~ 328 (343)
T 2xzm_R 250 REF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF 328 (343)
T ss_dssp EEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE
T ss_pred eee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEec
Confidence 333 23467999999999999999998899999998765543 221 22344566666 6899999999
Q ss_pred cCCeEEEEEecCC
Q 003445 287 NQSCVGVWVVDIS 299 (819)
Q Consensus 287 ~Dg~V~IW~ld~~ 299 (819)
.||.|++|+++++
T Consensus 329 ~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 329 TDGVIRTFSFETS 341 (343)
T ss_dssp TTSEEEEEEEEEE
T ss_pred CCceEEEEEEEcc
Confidence 9999999998764
No 8
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.5e-37 Score=334.46 Aligned_cols=289 Identities=21% Similarity=0.461 Sum_probs=262.9
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
....+.+|.+.|++++|+| ++++|++|+.||.|++|++.+++....+.+|...|.+++|+|++++|++|+.||.|++||
T Consensus 15 ~~~~~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eEEEEcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 3457889999999999999 677999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003445 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTV 167 (819)
Q Consensus 88 l~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I 167 (819)
+.+++.+..+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+..|...|.+++|+|++++|++++.||.|
T Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 173 (312)
T 4ery_A 94 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173 (312)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEe-cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeE--EEE-eCCCCEEE
Q 003445 168 KLWDLTAGKLLHDFK-CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRC--LTF-NPDGRTLL 243 (819)
Q Consensus 168 ~IwDl~t~~~i~~~~-~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~s--l~f-spdg~~La 243 (819)
++||+++++.+..+. .+...+.+++|+|++.+|++++.||.|++||+.+++.+..+..|...+.+ ..| .+++.+|+
T Consensus 174 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (312)
T 4ery_A 174 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 253 (312)
T ss_dssp EEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEE
T ss_pred EEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEE
Confidence 999999998887765 45678999999999999999999999999999999999998877654332 233 46788999
Q ss_pred EEECC-CEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEE--cCCeEEEEEec
Q 003445 244 CGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSY--NQSCVGVWVVD 297 (819)
Q Consensus 244 sgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~--~Dg~V~IW~ld 297 (819)
+|+.+ .|++|++.+.+....+..+...+..+.+ +++.++++++ .|+.|++|+.+
T Consensus 254 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 254 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 88876 5999999999988888888887877776 6788898887 69999999875
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=342.22 Aligned_cols=296 Identities=20% Similarity=0.347 Sum_probs=251.6
Q ss_pred ccceEEEEeccCC-CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEE---EecCCCCCeEEEEEcCCCCEEEEEECC
Q 003445 5 RAYKLQEFVAHSS-TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL---SLSGHTSGIDSVSFDSSEVLVAAGAAS 80 (819)
Q Consensus 5 r~~kl~~~~~H~~-~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~---~l~~h~~~V~~l~fspdg~~Lasgs~D 80 (819)
....+..+.+|.. .|++++|+| ++.+|++|+.|+.|+|||+..+.... ...+|...|.+++|+|++++|++|+.|
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D 82 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT
T ss_pred cEEEeeeecCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC
Confidence 3456778999998 999999999 67789999999999999998775432 236899999999999999999999999
Q ss_pred CeEEEEECCCC--eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC---eEEEEEecCCCCeEEEEEcCCC
Q 003445 81 GTIKLWDLEEA--KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK---GCIHTYKGHTRGVNAIRFTPDG 155 (819)
Q Consensus 81 G~I~IWDl~s~--~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~---~~i~~~~~h~~~I~sl~fspdg 155 (819)
++|++||+..+ +.+..+.+|...|.+++|+|++++|++|+.|+.|++||++++ .++..+.+|...|.+++|+|++
T Consensus 83 ~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 83 ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ 162 (345)
T ss_dssp SCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS
T ss_pred CcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC
Confidence 99999999876 467889999999999999999999999999999999999876 4567788999999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCe--EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC---------------Ce
Q 003445 156 RWVVSGGEDNTVKLWDLTAGK--LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET---------------FE 218 (819)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~--~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~---------------~~ 218 (819)
++|++|+.|+.|++||.++++ +...+.+|...|++++|+|++.+|++|+.|++|++||... ++
T Consensus 163 ~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~ 242 (345)
T 3fm0_A 163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK 242 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence 999999999999999998875 4567888999999999999999999999999999999632 23
Q ss_pred EEEEeCC-CCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCcee---------eeeeccccceeEeEec-CC-CEEEEE
Q 003445 219 LIGSAGP-ETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCH---------DAVDVGWSRLSDLNVH-EG-KLLGCS 285 (819)
Q Consensus 219 ~l~~~~~-~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~---------~~~~~~~s~i~~l~~~-dg-~lLa~~ 285 (819)
++..+.. |...|.+++|+|++..|++++.+ .+++|++++.... .....+...+..+.++ ++ .+|++|
T Consensus 243 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~ 322 (345)
T 3fm0_A 243 CICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASC 322 (345)
T ss_dssp EEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEE
T ss_pred eeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEc
Confidence 3444444 78899999999999999988776 6999999765321 1123455677888774 55 599999
Q ss_pred EcCCeEEEEEecCCce
Q 003445 286 YNQSCVGVWVVDISRI 301 (819)
Q Consensus 286 ~~Dg~V~IW~ld~~~~ 301 (819)
+.||.|++|++...+.
T Consensus 323 s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 323 SDDGEVAFWKYQRPEG 338 (345)
T ss_dssp ETTSCEEEEEECC---
T ss_pred CCCCcEEEEEecCCCC
Confidence 9999999999987663
No 10
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.9e-39 Score=356.80 Aligned_cols=294 Identities=23% Similarity=0.378 Sum_probs=261.4
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (819)
....+.|.+|.+.|++++|+| ++++|++|+.||+|+|||+.+++....+.+|...|.+++|+|++++|++|+.|+.|++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eEEeecccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 445678999999999999999 6778999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCe-------EEEEEcCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeEEEEE-----ecCCCCeEEEEEc
Q 003445 86 WDLEEAK-------IVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTY-----KGHTRGVNAIRFT 152 (819)
Q Consensus 86 WDl~s~~-------~i~~l~~h~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~t~~~i~~~-----~~h~~~I~sl~fs 152 (819)
||+.+.. ....+.+|...+.++.|.|++ ..|++|+.|++|++||+++++.+..+ .+|...|.+++|+
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 9997532 345678899999999999975 57999999999999999999998887 5789999999998
Q ss_pred C-CCCEEEEEECCCeEEEEECC-CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCC---
Q 003445 153 P-DGRWVVSGGEDNTVKLWDLT-AGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET--- 227 (819)
Q Consensus 153 p-dg~~L~sgs~Dg~I~IwDl~-t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~--- 227 (819)
+ ++++|++|+.||.|++||++ .++.+..+.+|.+.|.+++|+|++.+|++|+.||+|++||+++++.+..+..+.
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 294 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN 294 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence 7 88999999999999999998 557788899999999999999999999999999999999999999888775542
Q ss_pred ----CCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeee----eccccceeEeEe-cCCCEEEEEEcCCeEEEEEec
Q 003445 228 ----SGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV----DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 228 ----~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~----~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld 297 (819)
..|.+++|+|+|++|++|+.+ .|++||....+....+ ..+...+..+.+ ++|.+|++|+.|+.|+||++.
T Consensus 295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 248999999999999999776 5999999887776554 455667777766 789999999999999999987
Q ss_pred CCc
Q 003445 298 ISR 300 (819)
Q Consensus 298 ~~~ 300 (819)
..+
T Consensus 375 ~~~ 377 (380)
T 3iz6_a 375 GHR 377 (380)
T ss_dssp SSS
T ss_pred CCc
Confidence 654
No 11
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.9e-37 Score=343.43 Aligned_cols=287 Identities=24% Similarity=0.442 Sum_probs=254.4
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCC------------------CeEEEEEcCCC
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTS------------------GIDSVSFDSSE 71 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~------------------~V~~l~fspdg 71 (819)
....+|.+.|+|++|+| ++++|++|+ ++.++||++.+++.+..+..|.. .|.+++|+|++
T Consensus 58 ~~~~~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg 135 (393)
T 1erj_A 58 HKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG 135 (393)
T ss_dssp EEEEECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS
T ss_pred EEecCCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC
Confidence 34447999999999999 667888876 68899999999998888876542 39999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEE
Q 003445 72 VLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRF 151 (819)
Q Consensus 72 ~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~f 151 (819)
++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||++++++...+. +...+.+++|
T Consensus 136 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~ 214 (393)
T 1erj_A 136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAV 214 (393)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999888876 5677999999
Q ss_pred cC-CCCEEEEEECCCeEEEEECCCCeEEEEE-------ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC------
Q 003445 152 TP-DGRWVVSGGEDNTVKLWDLTAGKLLHDF-------KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF------ 217 (819)
Q Consensus 152 sp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~-------~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~------ 217 (819)
+| ++++|++|+.||.|++||+++++.+..+ .+|...|.+++|+|++.+|++|+.||.|++||+++.
T Consensus 215 ~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~ 294 (393)
T 1erj_A 215 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 294 (393)
T ss_dssp CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccc
Confidence 99 8999999999999999999999888776 468899999999999999999999999999999753
Q ss_pred ------eEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeEec-------CCCEEE
Q 003445 218 ------ELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVH-------EGKLLG 283 (819)
Q Consensus 218 ------~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~-------dg~lLa 283 (819)
.+...+.+|...|.+++|++++.+|++|+.| .+++||..+.++...+..+...+..+.+. ++.+|+
T Consensus 295 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~ 374 (393)
T 1erj_A 295 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 374 (393)
T ss_dssp ------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEE
T ss_pred cCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEE
Confidence 3455677899999999999999999999887 49999999999888888888888777763 578999
Q ss_pred EEEcCCeEEEEEecCC
Q 003445 284 CSYNQSCVGVWVVDIS 299 (819)
Q Consensus 284 ~~~~Dg~V~IW~ld~~ 299 (819)
+|+.|+.|+||++...
T Consensus 375 sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 375 TGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEETTSEEEEEEEEEC
T ss_pred EECCCCcEEECccccc
Confidence 9999999999998643
No 12
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-37 Score=333.56 Aligned_cols=288 Identities=20% Similarity=0.333 Sum_probs=237.0
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC--ceEEEe-cC-CCCCeEEEEEcCCCCEEEEEECCCe
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP--NAILSL-SG-HTSGIDSVSFDSSEVLVAAGAASGT 82 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~--~~i~~l-~~-h~~~V~~l~fspdg~~Lasgs~DG~ 82 (819)
..++.+.+|.+.|++++|+|+ +|++|+.|+.|++||+..+ .....+ .+ |...|.+++|+|++++|++|+.|++
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred ccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 356789999999999999983 8999999999999999764 445555 44 9999999999999999999999999
Q ss_pred EEEEECCC-------CeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC----CeEEEEEecCCCCeEEEEE
Q 003445 83 IKLWDLEE-------AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK----KGCIHTYKGHTRGVNAIRF 151 (819)
Q Consensus 83 I~IWDl~s-------~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t----~~~i~~~~~h~~~I~sl~f 151 (819)
|++||+.. .+.+..+.+|...|.+++|+|++++|++|+.|+.|++||++. .+++..+.+|...|.+++|
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~ 161 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW 161 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE
Confidence 99999853 456788899999999999999999999999999999999953 3577888999999999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCC--eEEEEEecCCCCeEEEEEeCC--CCEEEEEECCCeEEEEECCCC--------eE
Q 003445 152 TPDGRWVVSGGEDNTVKLWDLTAG--KLLHDFKCHEGQIQCIDFHPH--EFLLATGSADRTVKFWDLETF--------EL 219 (819)
Q Consensus 152 spdg~~L~sgs~Dg~I~IwDl~t~--~~i~~~~~h~~~I~sl~fspd--g~~Lasgs~Dg~I~iwDl~~~--------~~ 219 (819)
+|++.+|++|+.|+.|++||..++ +++..+.+|.+.|.+++|+|+ +.+|++|+.|++|++||+..+ ..
T Consensus 162 ~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 241 (330)
T 2hes_X 162 HPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC 241 (330)
T ss_dssp CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEE
Confidence 999999999999999999999876 678889999999999999998 779999999999999998754 34
Q ss_pred EEEeCC-CCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCce--eeee-ecccc-ceeEeEec---CCCEEEEEEcCCe
Q 003445 220 IGSAGP-ETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRC--HDAV-DVGWS-RLSDLNVH---EGKLLGCSYNQSC 290 (819)
Q Consensus 220 l~~~~~-~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~--~~~~-~~~~s-~i~~l~~~---dg~lLa~~~~Dg~ 290 (819)
...+.. |...|.+++|++++ +|++++.| .|++|+....+. .... ..+.. .+..+.+. ++.+|++|+.|+.
T Consensus 242 ~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~ 320 (330)
T 2hes_X 242 EAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI 320 (330)
T ss_dssp EEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSE
T ss_pred eeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCc
Confidence 455544 88899999999776 56665555 699999987642 2222 23333 56666663 5889999999999
Q ss_pred EEEEEecC
Q 003445 291 VGVWVVDI 298 (819)
Q Consensus 291 V~IW~ld~ 298 (819)
|+||+++.
T Consensus 321 v~~W~~~~ 328 (330)
T 2hes_X 321 VNFWSLEK 328 (330)
T ss_dssp EEEEEC--
T ss_pred EEEEEecc
Confidence 99999864
No 13
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.8e-36 Score=327.23 Aligned_cols=293 Identities=24% Similarity=0.407 Sum_probs=259.5
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc-----eEEEecCCCCCeEEEEEcCCCCEEEEEECCC
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-----AILSLSGHTSGIDSVSFDSSEVLVAAGAASG 81 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~-----~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG 81 (819)
....+|+||.+.|+||+|+|+++++|++|+.||+|+|||+.+.+ ....+.+|...|.+++|+|++++|++|+.||
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 33457999999999999999778999999999999999986543 4667889999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEE-EEEecCCCCeEEEEEcCCC--CEE
Q 003445 82 TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI-HTYKGHTRGVNAIRFTPDG--RWV 158 (819)
Q Consensus 82 ~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i-~~~~~h~~~I~sl~fspdg--~~L 158 (819)
.|++|+............+...+..+.+++++.+|++++.|+.+++||+...... ....+|...+.+++|++++ .++
T Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 9999999999999999889999999999999999999999999999999876543 3456788999999999864 578
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCC
Q 003445 159 VSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPD 238 (819)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspd 238 (819)
++++.|+.|++||+++++.+..+.+|.+.|++++|+|++.+|++|+.||.|++||+.+++.+..+..+ ..|.++.|+|+
T Consensus 189 ~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~ 267 (340)
T 4aow_A 189 VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPN 267 (340)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSS
T ss_pred EEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999888755 67999999999
Q ss_pred CCEEEEEECCCEEEEEecCCceeeeee---------ccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCCc
Q 003445 239 GRTLLCGLHESLKVFSWEPIRCHDAVD---------VGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISR 300 (819)
Q Consensus 239 g~~Lasgs~d~I~Vwd~~~~~~~~~~~---------~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~ 300 (819)
+.+++++.++.|++|+++.......+. .+...+..+.+ +++++|++|+.||.|+||++.+|.
T Consensus 268 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 268 RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 999988888899999998876655432 34455666666 789999999999999999999874
No 14
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-36 Score=325.02 Aligned_cols=294 Identities=18% Similarity=0.308 Sum_probs=268.2
Q ss_pred ccceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003445 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIK 84 (819)
Q Consensus 5 r~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (819)
...+...+.+|.+.|++++|+| ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|+
T Consensus 21 ~~~~~~~l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 21 SHMKAIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp CSEEEEEEECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred cccccEEEEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 3456678999999999999999 677999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECC-----CcEEEEECCCCe-----------EEEEEecCCC--Ce
Q 003445 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD-----TNLKIWDIRKKG-----------CIHTYKGHTR--GV 146 (819)
Q Consensus 85 IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~D-----g~I~IwDi~t~~-----------~i~~~~~h~~--~I 146 (819)
+||+.+++.+..+. +...+.+++|+|++++|++++.+ |.|++||+.... .+..+..|.. .+
T Consensus 100 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 100 LWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp EEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred EEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 99999999999888 88999999999999999999999 999999987653 3344555666 89
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCC-CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC
Q 003445 147 NAIRFTPDGRWVVSGGEDNTVKLWDLTA-GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP 225 (819)
Q Consensus 147 ~sl~fspdg~~L~sgs~Dg~I~IwDl~t-~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~ 225 (819)
.+++|+|++++|++++.||.|++||+++ ++.+..+..|...|.+++|+|++.+|++++.||.|++||+++++.+..+.
T Consensus 179 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~- 257 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE- 257 (369)
T ss_dssp EEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-
T ss_pred eEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-
Confidence 9999999999999999999999999998 78889999999999999999999999999999999999999999888887
Q ss_pred CCCCeeEEEEeCCCCEEEEEECC---------------CEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCC
Q 003445 226 ETSGVRCLTFNPDGRTLLCGLHE---------------SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQS 289 (819)
Q Consensus 226 ~~~~I~sl~fspdg~~Lasgs~d---------------~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg 289 (819)
+...+.+++|+|+++++++++.+ .+++|+..+.+....+..+...+..+.+ +++++|++++.||
T Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 337 (369)
T 3zwl_B 258 TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDG 337 (369)
T ss_dssp CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCC
Confidence 66889999999999999988765 4899999999988888888888888877 6899999999999
Q ss_pred eEEEEEecCCce
Q 003445 290 CVGVWVVDISRI 301 (819)
Q Consensus 290 ~V~IW~ld~~~~ 301 (819)
.|++|+++.+..
T Consensus 338 ~v~iw~~~~~~~ 349 (369)
T 3zwl_B 338 FIRLHHFEKSYF 349 (369)
T ss_dssp EEEEEEECHHHH
T ss_pred eEEEEECccccc
Confidence 999999987553
No 15
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.7e-36 Score=361.12 Aligned_cols=287 Identities=26% Similarity=0.448 Sum_probs=255.1
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC-----ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-----NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIK 84 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~-----~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (819)
..+.+|.+.|+|++|+|+++.+|++|+.||.|+||++.+. .....+.+|...|.+++|+|++++|++|+.||+|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 4689999999999999988889999999999999998653 34567889999999999999999999999999999
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE---ecCCCCeEEEEEcCCC--CEEE
Q 003445 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY---KGHTRGVNAIRFTPDG--RWVV 159 (819)
Q Consensus 85 IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~---~~h~~~I~sl~fspdg--~~L~ 159 (819)
+||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+......... .+|...|.+++|+|++ ..|+
T Consensus 456 vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 535 (694)
T 3dm0_A 456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV 535 (694)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred EEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE
Confidence 9999999999999999999999999999999999999999999998765433332 3688899999999986 6899
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCC
Q 003445 160 SGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG 239 (819)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg 239 (819)
+|+.|+.|++||+++++....+.+|.+.|++++|+|++.+|++|+.||.|++||+.+++.+..+.. ...|.+++|+|++
T Consensus 536 s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~ 614 (694)
T 3dm0_A 536 SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNR 614 (694)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSS
T ss_pred EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999887765 4679999999999
Q ss_pred CEEEEEECCCEEEEEecCCceeeeeecccc-------------------ceeEeEe-cCCCEEEEEEcCCeEEEEEec
Q 003445 240 RTLLCGLHESLKVFSWEPIRCHDAVDVGWS-------------------RLSDLNV-HEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 240 ~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~s-------------------~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld 297 (819)
.+|+++.+++|++||+++.+....+..... .+..+.+ ++|++|++|+.||.|+||++.
T Consensus 615 ~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 615 YWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp SEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 999999999999999998877655432211 1334444 789999999999999999975
No 16
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.4e-37 Score=337.97 Aligned_cols=296 Identities=17% Similarity=0.233 Sum_probs=261.1
Q ss_pred CCCcccceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc------eEEEecCCCCCeEEEEEcCC----
Q 003445 1 MTTKRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN------AILSLSGHTSGIDSVSFDSS---- 70 (819)
Q Consensus 1 M~tkr~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~------~i~~l~~h~~~V~~l~fspd---- 70 (819)
|..........+.+|.+.|++++|+| .+|++|+.||.|++|++.+++ .+..+.+|...|.+++|+|+
T Consensus 1 m~~~~~~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 77 (397)
T 1sq9_A 1 MSKVFIATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERD 77 (397)
T ss_dssp --CEEEEEEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETT
T ss_pred CchhhhhhhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccC
Confidence 34333445567789999999999987 689999999999999998887 78888999999999999999
Q ss_pred C---CEEEEEECCCeEEEEECCCCeE-----EEEEcCC-----CCCeEEEEEe----cCCCE-EEEEECCCcEEEEECCC
Q 003445 71 E---VLVAAGAASGTIKLWDLEEAKI-----VRTLTGH-----RSNCISVDFH----PFGEF-FASGSLDTNLKIWDIRK 132 (819)
Q Consensus 71 g---~~Lasgs~DG~I~IWDl~s~~~-----i~~l~~h-----~~~I~sl~fs----p~g~~-Lasgs~Dg~I~IwDi~t 132 (819)
+ .+|++++.||.|++||+.+++. +..+..| ...|.+++|+ |++++ |++++.||.|++||+++
T Consensus 78 g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 78 AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred CccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 9 9999999999999999998876 8888888 5899999999 99999 99999999999999988
Q ss_pred ------CeEEE-----EE-------ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec---C---CCCe
Q 003445 133 ------KGCIH-----TY-------KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC---H---EGQI 188 (819)
Q Consensus 133 ------~~~i~-----~~-------~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~---h---~~~I 188 (819)
++.+. .+ ..|...|.+++|+|++ +|++++.||.|++||+++++.+..+.. | ...|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i 236 (397)
T 1sq9_A 158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 236 (397)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCcc
Confidence 65555 66 3488899999999999 999999999999999999999999998 8 9999
Q ss_pred EEEEEeCCCCEEEEEECC---CeEEEEECCCCeEEEEeCC-------------CCCCeeEEEEeCCCCEEEEEECC-CEE
Q 003445 189 QCIDFHPHEFLLATGSAD---RTVKFWDLETFELIGSAGP-------------ETSGVRCLTFNPDGRTLLCGLHE-SLK 251 (819)
Q Consensus 189 ~sl~fspdg~~Lasgs~D---g~I~iwDl~~~~~l~~~~~-------------~~~~I~sl~fspdg~~Lasgs~d-~I~ 251 (819)
.+++|+|++.+|++++.| |.|++||+.+++.+..+.. |...|.+++|+|++++|++++.+ .|+
T Consensus 237 ~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 316 (397)
T 1sq9_A 237 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR 316 (397)
T ss_dssp EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred ceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence 999999999999999999 9999999999999999988 89999999999999999999877 499
Q ss_pred EEEecCCceeeeee------cc---------------ccceeEeEe-cCC----------CEEEEEEcCCeEEEEEecCC
Q 003445 252 VFSWEPIRCHDAVD------VG---------------WSRLSDLNV-HEG----------KLLGCSYNQSCVGVWVVDIS 299 (819)
Q Consensus 252 Vwd~~~~~~~~~~~------~~---------------~s~i~~l~~-~dg----------~lLa~~~~Dg~V~IW~ld~~ 299 (819)
+|++...++...+. .+ ...+..+.+ +++ ++|++++.||.|++|+++.+
T Consensus 317 iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 317 FWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred EEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 99999998888887 55 677777777 455 79999999999999999876
Q ss_pred c
Q 003445 300 R 300 (819)
Q Consensus 300 ~ 300 (819)
+
T Consensus 397 ~ 397 (397)
T 1sq9_A 397 K 397 (397)
T ss_dssp -
T ss_pred C
Confidence 3
No 17
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.8e-36 Score=357.31 Aligned_cols=290 Identities=17% Similarity=0.305 Sum_probs=251.2
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (819)
..+.+|...|++++|+|++..+|++|+.|++|++||..+++....+.+|...|.+++|+|++++|++|+.||+|++||+.
T Consensus 141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~ 220 (611)
T 1nr0_A 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV 220 (611)
T ss_dssp BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECC
Confidence 45789999999999999666679999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEc-------CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE------------------------
Q 003445 90 EAKIVRTLT-------GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT------------------------ 138 (819)
Q Consensus 90 s~~~i~~l~-------~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~------------------------ 138 (819)
+++.+..+. +|...|.+++|+|++++|++++.|++|++||+++++++..
T Consensus 221 ~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 300 (611)
T 1nr0_A 221 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI 300 (611)
T ss_dssp TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEE
T ss_pred CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEE
Confidence 999988884 7999999999999999999999999999999998765543
Q ss_pred -------------------EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE-e----------------
Q 003445 139 -------------------YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF-K---------------- 182 (819)
Q Consensus 139 -------------------~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~-~---------------- 182 (819)
+.+|...|.+++|+|+|++|++++.|+.|++||+.+++....+ .
T Consensus 301 s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 380 (611)
T 1nr0_A 301 SANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 380 (611)
T ss_dssp ETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC
T ss_pred eCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCc
Confidence 3478899999999999999999999999999999876543221 0
Q ss_pred -----------------------------------------------------------------cCCCCeEEEEEeCCC
Q 003445 183 -----------------------------------------------------------------CHEGQIQCIDFHPHE 197 (819)
Q Consensus 183 -----------------------------------------------------------------~h~~~I~sl~fspdg 197 (819)
.|...+.+++|+|+|
T Consensus 381 l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg 460 (611)
T 1nr0_A 381 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDK 460 (611)
T ss_dssp EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTS
T ss_pred EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCC
Confidence 023457789999999
Q ss_pred CEEEEEECCCeEEEEECCCCeE--EEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecC-Cceeee--eeccccce
Q 003445 198 FLLATGSADRTVKFWDLETFEL--IGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP-IRCHDA--VDVGWSRL 271 (819)
Q Consensus 198 ~~Lasgs~Dg~I~iwDl~~~~~--l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~-~~~~~~--~~~~~s~i 271 (819)
++|++|+.|++|++||+.++.. +.. ..|...|.+++|+|||++|++++.+ .+++|+... .++... +..+...+
T Consensus 461 ~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V 539 (611)
T 1nr0_A 461 QFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV 539 (611)
T ss_dssp CEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred CEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccce
Confidence 9999999999999999987654 233 5688899999999999999999877 699999987 555433 23356667
Q ss_pred eEeEe-cCCCEEEEEEcCCeEEEEEecCCc
Q 003445 272 SDLNV-HEGKLLGCSYNQSCVGVWVVDISR 300 (819)
Q Consensus 272 ~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~ 300 (819)
..+.+ ++|++|++++.|++|+||+++.+.
T Consensus 540 ~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 540 ACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred eEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 77766 799999999999999999998765
No 18
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.1e-36 Score=327.29 Aligned_cols=246 Identities=20% Similarity=0.421 Sum_probs=236.7
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (819)
...+.+|...|.+++|++ ++.++++|+.|+.|++||+.+++.+..+..|...+.+++|+|++++|++|+.||.|++||+
T Consensus 73 ~~~l~gh~~~v~~~~~~~-~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~ 151 (321)
T 3ow8_A 73 QWSLEGHQLGVVSVDISH-TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV 151 (321)
T ss_dssp EEEECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred eeeeccCCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence 346889999999999999 6778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003445 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVK 168 (819)
Q Consensus 89 ~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~ 168 (819)
++++....+..|...|.+++|+|++++|++|+.||.|++||+++++.+..+.+|...|.+++|+|++++|++|+.||.|+
T Consensus 152 ~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~ 231 (321)
T 3ow8_A 152 ESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIK 231 (321)
T ss_dssp TTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEE
T ss_pred CCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC
Q 003445 169 LWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (819)
Q Consensus 169 IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (819)
+||+++++....+.+|...|.+++|+|++.+|++++.|++|++||+.+++++..+..|...|.+++|+|+|++|++++.|
T Consensus 232 iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d 311 (321)
T 3ow8_A 232 IYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD 311 (321)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred -CEEEEEe
Q 003445 249 -SLKVFSW 255 (819)
Q Consensus 249 -~I~Vwd~ 255 (819)
.|++||.
T Consensus 312 ~~i~vwd~ 319 (321)
T 3ow8_A 312 QEIHIYDC 319 (321)
T ss_dssp CCEEEEEC
T ss_pred CeEEEEeC
Confidence 5999996
No 19
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=335.40 Aligned_cols=284 Identities=19% Similarity=0.250 Sum_probs=235.6
Q ss_pred eccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC-----------CCceEEEecCCCCCeEEEEEcCCCCEEEEEECCC
Q 003445 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG-----------KPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASG 81 (819)
Q Consensus 13 ~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~-----------~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG 81 (819)
..|...|.+++|+| ++++|++++ |+++++||.. ..........|...|.+++|++++ .|++|+.||
T Consensus 27 ~~~~~~v~~~~fs~-dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg 103 (344)
T 4gqb_B 27 ACMERQLEAARYRS-DGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSG 103 (344)
T ss_dssp SSCCSEEEEEEECT-TSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTS
T ss_pred ccccCCEEEEEECC-CCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCC
Confidence 35778899999999 667777776 6777777621 011111222366789999999985 677999999
Q ss_pred eEEEEECCCCeEEE----EEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-
Q 003445 82 TIKLWDLEEAKIVR----TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR- 156 (819)
Q Consensus 82 ~I~IWDl~s~~~i~----~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~- 156 (819)
+|++||+.+++.+. .+.+|...|.+++|+|++++|++|+.||+|++||+++++++..+.+|...|.+++|++++.
T Consensus 104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 183 (344)
T 4gqb_B 104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS 183 (344)
T ss_dssp EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTT
T ss_pred EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCC
Confidence 99999999886433 3458999999999999999999999999999999999999999999999999999999874
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEE
Q 003445 157 WVVSGGEDNTVKLWDLTAGKLLHDFK--CHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCL 233 (819)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t~~~i~~~~--~h~~~I~sl~fspd-g~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl 233 (819)
+|++|+.|+.|++||+++++....+. .+...+.+++|+|+ +.+|++|+.||+|++||+++++++..+..|...|+++
T Consensus 184 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v 263 (344)
T 4gqb_B 184 VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL 263 (344)
T ss_dssp EEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEE
T ss_pred ceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 78999999999999999999888775 35567999999995 6789999999999999999999999999999999999
Q ss_pred EEeCCC-CEEEEEECC-CEEEEEecCCceeeeeeccccceeEeEe-cCC-CEEEEEEcCCeEEEEEecCCc
Q 003445 234 TFNPDG-RTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEG-KLLGCSYNQSCVGVWVVDISR 300 (819)
Q Consensus 234 ~fspdg-~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg-~lLa~~~~Dg~V~IW~ld~~~ 300 (819)
+|+|+| ++|++|+.| .|+|||..+.++.. +..+...+..+.+ +++ .+|++++.|+.|++|+++...
T Consensus 264 ~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 264 VFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 999998 578888776 69999999887764 4556677888877 455 578899999999999998754
No 20
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.2e-36 Score=326.59 Aligned_cols=289 Identities=15% Similarity=0.200 Sum_probs=254.8
Q ss_pred EEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc--eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003445 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN--AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (819)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~--~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (819)
.+..|.+.|++++|+| ++++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 3 ~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp EEESCSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred eecccCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 3566999999999999 67889999999999999998887 88889999999999999999999999999999999999
Q ss_pred CCCeEEEEE--cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeE---EEE-EecCCCCeEEEEEcCCCCEEEEEE
Q 003445 89 EEAKIVRTL--TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC---IHT-YKGHTRGVNAIRFTPDGRWVVSGG 162 (819)
Q Consensus 89 ~s~~~i~~l--~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~---i~~-~~~h~~~I~sl~fspdg~~L~sgs 162 (819)
.+++....+ ..|...|.+++|+|++++|++++.||.|++||++.+.. ... ...|...|.+++|+|++++|++++
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 988755443 67899999999999999999999999999999988762 333 356889999999999999999999
Q ss_pred CCCeEEEEEC------------------CCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeC
Q 003445 163 EDNTVKLWDL------------------TAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG 224 (819)
Q Consensus 163 ~Dg~I~IwDl------------------~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~ 224 (819)
.||.|++||+ ..++.+..+..|...|.+++|+|++.+|++++.||.|++||+++++.+..+.
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 241 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 241 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc
Confidence 9999999995 4678899998999999999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEEeCCCCEEEEEECCCEEEEEecC--Cce--e------------------------------------eee
Q 003445 225 PETSGVRCLTFNPDGRTLLCGLHESLKVFSWEP--IRC--H------------------------------------DAV 264 (819)
Q Consensus 225 ~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~--~~~--~------------------------------------~~~ 264 (819)
.|...|.+++|+|++.+|++|.++.+++|++.. +.. . ..+
T Consensus 242 ~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (372)
T 1k8k_C 242 SETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 321 (372)
T ss_dssp CSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred cCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccc
Confidence 999999999999999999999777899999987 320 0 112
Q ss_pred -eccccceeEeEe--cCC---CEEEEEEcCCeEEEEEecCCc
Q 003445 265 -DVGWSRLSDLNV--HEG---KLLGCSYNQSCVGVWVVDISR 300 (819)
Q Consensus 265 -~~~~s~i~~l~~--~dg---~lLa~~~~Dg~V~IW~ld~~~ 300 (819)
..+...+..+.+ .+| .+|++++.||.|++|+++..+
T Consensus 322 ~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 322 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 355667777753 555 899999999999999987643
No 21
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.4e-35 Score=313.66 Aligned_cols=285 Identities=22% Similarity=0.363 Sum_probs=252.3
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce---EEEec--CCCCCeEEEEEcCCCCEEEEEECCCe
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA---ILSLS--GHTSGIDSVSFDSSEVLVAAGAASGT 82 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~---i~~l~--~h~~~V~~l~fspdg~~Lasgs~DG~ 82 (819)
+.....+|...|++++|+| ++++|++++ ||.|++||+.++.. +..+. +|...|.+++|+|++++|++++.||.
T Consensus 43 ~~~~~~~h~~~v~~~~~~~-~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 120 (337)
T 1gxr_A 43 RQINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120 (337)
T ss_dssp EEEEEECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred ccceeccCCCceEEEEEec-CCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCc
Confidence 4445568999999999999 677888888 99999999976643 33333 78999999999999999999999999
Q ss_pred EEEEECCCCe--EEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 003445 83 IKLWDLEEAK--IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVS 160 (819)
Q Consensus 83 I~IWDl~s~~--~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~s 160 (819)
|++||+.+++ ....+..|...|.+++|+|++++|++++.||.|++||+++++.+..+..|...|.+++|+|++++|++
T Consensus 121 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 200 (337)
T 1gxr_A 121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT 200 (337)
T ss_dssp EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEE
Confidence 9999999887 66778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCC
Q 003445 161 GGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR 240 (819)
Q Consensus 161 gs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~ 240 (819)
++.||.|++||+++++.+..+. +...+.+++|+|++.+|++++.|+.|++||+.+++.. .+..|...|.+++|+|+++
T Consensus 201 ~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~ 278 (337)
T 1gxr_A 201 GGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGK 278 (337)
T ss_dssp EETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSS
T ss_pred EecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCC
Confidence 9999999999999999888876 7788999999999999999999999999999988764 5678889999999999999
Q ss_pred EEEEEECC-CEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEec
Q 003445 241 TLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 241 ~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld 297 (819)
+|++++.+ .+++|++.+.+...... +...+..+.+ +++++|++++.||.|++|++-
T Consensus 279 ~l~~~~~dg~i~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 279 WFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred EEEEecCCCcEEEEECCCCeEEEEec-CCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 99999877 49999999887764443 3445555555 789999999999999999974
No 22
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.2e-36 Score=338.23 Aligned_cols=247 Identities=24% Similarity=0.470 Sum_probs=236.5
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
.+..+.+|.+.|++++|+| ++.+|++|+.||+|+|||+.+++++..+.+|...|.+++|+|++.+|++|+.||+|++||
T Consensus 142 ~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd 220 (410)
T 1vyh_C 142 FERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220 (410)
T ss_dssp CCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred EEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 4568899999999999999 677999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC-------------
Q 003445 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD------------- 154 (819)
Q Consensus 88 l~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspd------------- 154 (819)
+.++..+..+.+|...|.++.|+|++.+|++|+.||.|++||++++.+...+.+|...|.+++|+|+
T Consensus 221 ~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 300 (410)
T 1vyh_C 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 300 (410)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred CCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -------CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCC
Q 003445 155 -------GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET 227 (819)
Q Consensus 155 -------g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~ 227 (819)
|.+|++|+.|+.|++||+++++++..+.+|...|.+++|+|++.+|++|+.||+|++||+.+++++..+..|.
T Consensus 301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~ 380 (410)
T 1vyh_C 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 380 (410)
T ss_dssp -------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS
T ss_pred ccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC
Confidence 6799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEeCCCCEEEEEECC-CEEEEEe
Q 003445 228 SGVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (819)
Q Consensus 228 ~~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (819)
..|++++|+|++.+|++|+.| .|++|+.
T Consensus 381 ~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 381 HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999877 5999975
No 23
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.9e-36 Score=334.93 Aligned_cols=286 Identities=14% Similarity=0.236 Sum_probs=238.1
Q ss_pred EEeccCCCEEEEEEeeCCCcEEEEEeC------CCeEEEEECCCCce----EEEecCCCCCeEEEEEcCCCCEEEEEECC
Q 003445 11 EFVAHSSTVNCLKIGRKSSRVLVTGGE------DHKVNLWAIGKPNA----ILSLSGHTSGIDSVSFDSSEVLVAAGAAS 80 (819)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~~Latgs~------Dg~V~IWdl~~~~~----i~~l~~h~~~V~~l~fspdg~~Lasgs~D 80 (819)
....|...|++++|+| ++++|++|+. |+.|++|+..++.. .....+|...|.+++|+|++.++ +++.|
T Consensus 37 ~p~~H~~~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~d 114 (357)
T 4g56_B 37 APACMEVQIGAVRYRR-DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDS 114 (357)
T ss_dssp ---CCCSEEEEEEECS-SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETT
T ss_pred CcccccCCEEEEEECC-CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECC
Confidence 3457999999999999 6788999987 78899999866543 23345688999999999998655 67889
Q ss_pred CeEEEEECCCCeEEE----EEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 003445 81 GTIKLWDLEEAKIVR----TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR 156 (819)
Q Consensus 81 G~I~IWDl~s~~~i~----~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~ 156 (819)
|+|++||+.+++... ...+|...|.+++|+|++++|++|+.||.|++||+++++++..+.+|...|++++|++++.
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~ 194 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD 194 (357)
T ss_dssp SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS
T ss_pred CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC
Confidence 999999998876543 3457999999999999999999999999999999999999999999999999999999875
Q ss_pred -EEEEEECCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeE
Q 003445 157 -WVVSGGEDNTVKLWDLTAGKLLHDFK--CHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIGSAGPETSGVRC 232 (819)
Q Consensus 157 -~L~sgs~Dg~I~IwDl~t~~~i~~~~--~h~~~I~sl~fspd-g~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~s 232 (819)
++++++.||.|++||+++++....+. .+...+.+++|+|+ +.+|++|+.|+.|++||+++++.+..+..|...|++
T Consensus 195 ~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 274 (357)
T 4g56_B 195 TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITG 274 (357)
T ss_dssp SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEE
T ss_pred ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEE
Confidence 78899999999999999988766554 46678999999997 578999999999999999999999999999999999
Q ss_pred EEEeCCC-CEEEEEECC-CEEEEEecCCceeeeeeccccceeEeEec--CCCEEEEEEcCCeEEEEEecCC
Q 003445 233 LTFNPDG-RTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVH--EGKLLGCSYNQSCVGVWVVDIS 299 (819)
Q Consensus 233 l~fspdg-~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~--dg~lLa~~~~Dg~V~IW~ld~~ 299 (819)
++|+|++ ++|++|+.| .|+|||+++.++...+ .+...+..+.++ ++.+|++++.|+.|++|++...
T Consensus 275 l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 275 LAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999987 578888776 6999999998887665 455678888773 7899999999999999998653
No 24
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.1e-35 Score=352.08 Aligned_cols=292 Identities=22% Similarity=0.316 Sum_probs=257.4
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC--ceEEEecCCCCCeEEEEEcCCCCEEEEEECC----
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP--NAILSLSGHTSGIDSVSFDSSEVLVAAGAAS---- 80 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~--~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D---- 80 (819)
..+..|.+|...|++++|+| ++++||+|+.||+|+|||+.++ .....+.+|.+.|.+++|+|++++|++++.+
T Consensus 50 ~~~~~~~~h~~~v~~~~~sp-dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~ 128 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 128 (611)
T ss_dssp SCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCS
T ss_pred ccCeEecCCCCceEEEEECC-CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCce
Confidence 34567899999999999999 7789999999999999998644 3456788999999999999999999998865
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 003445 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV 159 (819)
Q Consensus 81 G~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~-~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~ 159 (819)
+.|++|| .++....+.+|...|.+++|+|++. .|++|+.|++|++||..+++++..+.+|...|.+++|+|+|++|+
T Consensus 129 ~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~la 206 (611)
T 1nr0_A 129 GHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA 206 (611)
T ss_dssp EEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred eEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEE
Confidence 4677777 5666678899999999999999987 599999999999999999999999999999999999999999999
Q ss_pred EEECCCeEEEEECCCCeEEEEEe-------cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEE----------
Q 003445 160 SGGEDNTVKLWDLTAGKLLHDFK-------CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS---------- 222 (819)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~-------~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~---------- 222 (819)
+|+.|+.|++||+.+++.+..+. +|.+.|.+++|+|++.+|++++.|++|++||+.+++.+..
T Consensus 207 s~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~ 286 (611)
T 1nr0_A 207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ 286 (611)
T ss_dssp EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred EEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccce
Confidence 99999999999999999988884 7999999999999999999999999999999998765433
Q ss_pred ---------------------------------eCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeee-ecc
Q 003445 223 ---------------------------------AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV-DVG 267 (819)
Q Consensus 223 ---------------------------------~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~-~~~ 267 (819)
+.+|...|.+++|+|+|++|++++.| .|++||+.+.++...+ ..+
T Consensus 287 ~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h 366 (611)
T 1nr0_A 287 QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH 366 (611)
T ss_dssp EEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSC
T ss_pred eEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCC
Confidence 34688899999999999999999876 6999999988876655 445
Q ss_pred ccceeEeEecCCCEEEEEEcCCeEEEEEecCCce
Q 003445 268 WSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRI 301 (819)
Q Consensus 268 ~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~ 301 (819)
...+..+.+.++..+++++.|+.+++|++.....
T Consensus 367 ~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~ 400 (611)
T 1nr0_A 367 ATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGV 400 (611)
T ss_dssp SSCEEEEEECTTSCEEEEETTTEEEEECSSSSSS
T ss_pred cceEEEEEECCCCcEEEEEcCCceEEeecCCccc
Confidence 5667777776777888999999999999886543
No 25
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-35 Score=323.66 Aligned_cols=288 Identities=16% Similarity=0.307 Sum_probs=252.8
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEEC----CCCc------eEEEecC----------CCCCeEEEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI----GKPN------AILSLSG----------HTSGIDSVSF 67 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl----~~~~------~i~~l~~----------h~~~V~~l~f 67 (819)
+......|.+.|++++|+|++..+|++|+.||.|++|++ .+++ ....+.. |...|.+++|
T Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (425)
T 1r5m_A 37 KILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAW 116 (425)
T ss_dssp EECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEE
T ss_pred hheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEE
Confidence 334455677999999999954439999999999999999 8887 4555554 6889999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE---------
Q 003445 68 DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT--------- 138 (819)
Q Consensus 68 spdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~--------- 138 (819)
+|++++|++|+.||.|++|| .+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..
T Consensus 117 s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 195 (425)
T 1r5m_A 117 SHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS 195 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred cCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence 99999999999999999999 77888899999999999999999999999999999999999987765543
Q ss_pred -----------------------------------------------EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 139 -----------------------------------------------YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (819)
Q Consensus 139 -----------------------------------------------~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwD 171 (819)
+..|...|.+++|+|++++|++++.||.|++||
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 275 (425)
T 1r5m_A 196 SINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275 (425)
T ss_dssp ----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred ceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 335677899999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CE
Q 003445 172 LTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SL 250 (819)
Q Consensus 172 l~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I 250 (819)
+++++.+..+..|...|.+++|+|++ +|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.+ .|
T Consensus 276 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 354 (425)
T 1r5m_A 276 GGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQV 354 (425)
T ss_dssp SSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeE
Confidence 99999999998899999999999999 99999999999999999999999999999999999999999999999876 69
Q ss_pred EEEEecCCc--------------------eeeeeecccc--ceeEeEe-cCCCEEEEEEcCCeEEEEEec
Q 003445 251 KVFSWEPIR--------------------CHDAVDVGWS--RLSDLNV-HEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 251 ~Vwd~~~~~--------------------~~~~~~~~~s--~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld 297 (819)
++|++...+ ....+..+.. .+..+.+ +++++|++++.||.|++|+++
T Consensus 355 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 355 NVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 999998877 6677776654 7777777 688999999999999999986
No 26
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.2e-34 Score=337.71 Aligned_cols=282 Identities=28% Similarity=0.519 Sum_probs=258.2
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
..++.+.+|...|++++|+| ++.+|++++.||.|++||.. +..+..+.+|...|.+++|+|++++|++|+.||.|++|
T Consensus 294 ~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 294 QLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371 (577)
T ss_dssp CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cEEEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 34567889999999999999 67789999999999999975 55667788999999999999999999999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003445 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (819)
Q Consensus 87 Dl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~ 166 (819)
|. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.
T Consensus 372 ~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~ 449 (577)
T 2ymu_A 372 NR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT 449 (577)
T ss_dssp ET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred cC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE
Confidence 95 57788899999999999999999999999999999999995 57788899999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003445 167 VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (819)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs 246 (819)
|++||. +++.+..+.+|...|.+++|+|++.+|++++.|+.|++||. +++++..+..|...|++++|+|+|++|++++
T Consensus 450 v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 527 (577)
T 2ymu_A 450 VKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 527 (577)
T ss_dssp EEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred EEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEE
Confidence 999996 57788889999999999999999999999999999999995 6788889999999999999999999999998
Q ss_pred CCC-EEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEE
Q 003445 247 HES-LKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (819)
Q Consensus 247 ~d~-I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ 295 (819)
.|+ |++||. ++++...+..+...+..+.+ +|+++|++++.|++|++||
T Consensus 528 ~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 528 DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 874 999995 56777778888888888776 7899999999999999997
No 27
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-34 Score=306.53 Aligned_cols=286 Identities=19% Similarity=0.280 Sum_probs=256.3
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
..+..+.+|.+.|++++| + ++.+|++|+.||.|++||+.++.....+..|...|.+++|+|++.+|++|+.||.|++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 456789999999999999 7 56789999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC---eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEE
Q 003445 87 DLEEA---KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVVSGG 162 (819)
Q Consensus 87 Dl~s~---~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fsp-dg~~L~sgs 162 (819)
++... +.+..+.+|...|.+++| ++++|++++.||.|++|| .+..+..+..|...+.+++|.| +++++++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 162 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTAS 162 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEE
Confidence 98654 667788999999999999 578999999999999999 6788888999999999999998 999999999
Q ss_pred CCCeEEEEECCCCeEEEEEec-CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCE
Q 003445 163 EDNTVKLWDLTAGKLLHDFKC-HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRT 241 (819)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~~-h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~ 241 (819)
.||.|++|| .++....+.. |...|.+++|+|++. +++++.||.|++||+++++.+..+..|...|.+++|+|++.
T Consensus 163 ~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~- 238 (313)
T 3odt_A 163 ADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD- 238 (313)
T ss_dssp TTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-
T ss_pred CCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-
Confidence 999999999 5667777776 889999999999998 99999999999999999999999999999999999999996
Q ss_pred EEEEEC-CCEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCCceee
Q 003445 242 LLCGLH-ESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 242 Lasgs~-d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~~~p 303 (819)
|++++. +.+++|++.+.+....+..+...+..+.+ ++++ +++++.|+.|++|+++.++...
T Consensus 239 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 239 IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence 555554 46999999999998888888878888877 5566 6679999999999998876543
No 28
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.6e-34 Score=311.29 Aligned_cols=251 Identities=24% Similarity=0.490 Sum_probs=231.2
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (819)
...+..+..|...|.+++|+| ++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.||+|++
T Consensus 45 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~l 123 (304)
T 2ynn_A 45 QVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123 (304)
T ss_dssp TEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred CceeEEeeccCCcEEEEEEeC-CCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEE
Confidence 345678899999999999999 6788999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCC-eEEEEEcCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeEEEEEe-cCCCCeEEEEEcC--CCCEEEE
Q 003445 86 WDLEEA-KIVRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYK-GHTRGVNAIRFTP--DGRWVVS 160 (819)
Q Consensus 86 WDl~s~-~~i~~l~~h~~~I~sl~fsp-~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~-~h~~~I~sl~fsp--dg~~L~s 160 (819)
||++++ .....+.+|...|.+++|+| ++.+|++|+.|+.|++||++++.....+. .|...+..+.|+| ++.+|++
T Consensus 124 Wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 203 (304)
T 2ynn_A 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203 (304)
T ss_dssp EEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEE
T ss_pred EECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEE
Confidence 999887 56678899999999999999 57899999999999999998877665554 5667899999987 7789999
Q ss_pred EECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCC
Q 003445 161 GGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR 240 (819)
Q Consensus 161 gs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~ 240 (819)
|+.|+.|++||+++++++..+.+|...|.+++|+|++.+|++|+.||+|++||+.+++.+..+..+...+.+++|+|++.
T Consensus 204 ~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (304)
T 2ynn_A 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283 (304)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCG
T ss_pred EcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred --EEEEEECCCEEEEEecC
Q 003445 241 --TLLCGLHESLKVFSWEP 257 (819)
Q Consensus 241 --~Lasgs~d~I~Vwd~~~ 257 (819)
++++|.++++.+|++..
T Consensus 284 ~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 284 KNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp GGCEEEEETTEEEEEECC-
T ss_pred ceEEEEecCCceEEEEecc
Confidence 68999999999998764
No 29
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.9e-37 Score=336.61 Aligned_cols=245 Identities=13% Similarity=0.141 Sum_probs=214.9
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC--ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP--NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~--~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
..+..|.+.|+|++|+| ++++|++|+.||.|+|||+.++ +.+..+.+|...|.+++|+|++++|++++.||.|++||
T Consensus 5 ~~~~~~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 5 QVLHILPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEEEECSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred eeEecCCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 34556788999999999 6779999999999999999888 77788899999999999999999999999999999999
Q ss_pred CCCCe---EEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe---EEEEEec-CCCCeEEEEEcCCCCEEEE
Q 003445 88 LEEAK---IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG---CIHTYKG-HTRGVNAIRFTPDGRWVVS 160 (819)
Q Consensus 88 l~s~~---~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~---~i~~~~~-h~~~I~sl~fspdg~~L~s 160 (819)
+.+++ ....+.+|...|.+++|+|++++|++++.|+.|++||+++++ ....+.. |...|.+++|+|++++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 99877 677788899999999999999999999999999999999877 4677777 9999999999999999999
Q ss_pred EECCCeEEEEECC------------------CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeE---
Q 003445 161 GGEDNTVKLWDLT------------------AGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL--- 219 (819)
Q Consensus 161 gs~Dg~I~IwDl~------------------t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~--- 219 (819)
++.||.|++||+. .++++..+ .|...|.+++|+|++.+|++++.||.|++||+.+++.
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 242 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR 242 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence 9999999999985 35566667 8999999999999999999999999999999999876
Q ss_pred -EEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEec
Q 003445 220 -IGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (819)
Q Consensus 220 -l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (819)
+..+..|...|.+++|+|+|++|++|+++++.+|+..
T Consensus 243 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 243 ALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp ECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 7778889999999999999999999999988898876
No 30
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.4e-35 Score=322.73 Aligned_cols=285 Identities=17% Similarity=0.330 Sum_probs=248.1
Q ss_pred EEeccCCCEEEEEEeeC---CCcEEEEEeCCCeEEEEECCCCceEEEecC-----CCCCeEEEEEcCC----CCEEEEEE
Q 003445 11 EFVAHSSTVNCLKIGRK---SSRVLVTGGEDHKVNLWAIGKPNAILSLSG-----HTSGIDSVSFDSS----EVLVAAGA 78 (819)
Q Consensus 11 ~~~~H~~~V~~lafsp~---~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~-----h~~~V~~l~fspd----g~~Lasgs 78 (819)
...+|.+.|++++|+|+ +...+++++.++.|++||+.+++.+..+.. |...|.+++|+|+ +.+|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34489999999999984 456677777778999999998887766653 5678999999998 67999999
Q ss_pred CCCeEEEEECCCCeEEEEEcCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeEEEEE---ecCCCCeEEEEEcCC
Q 003445 79 ASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTY---KGHTRGVNAIRFTPD 154 (819)
Q Consensus 79 ~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp-~g~~Lasgs~Dg~I~IwDi~t~~~i~~~---~~h~~~I~sl~fspd 154 (819)
.||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+++++.+..+ ..|...|.+++|+|+
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence 999999999999999999999999999999999 8999999999999999999999999888 689999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEe----------------------------cCCCCeEEEEEeCCCCEEEEEECC
Q 003445 155 GRWVVSGGEDNTVKLWDLTAGKLLHDFK----------------------------CHEGQIQCIDFHPHEFLLATGSAD 206 (819)
Q Consensus 155 g~~L~sgs~Dg~I~IwDl~t~~~i~~~~----------------------------~h~~~I~sl~fspdg~~Lasgs~D 206 (819)
+++|++++.||.|++||+++++....+. .|...|.+++|+ +.+|++++.|
T Consensus 173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d 250 (366)
T 3k26_A 173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE 250 (366)
T ss_dssp SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence 9999999999999999999875443333 388999999999 7799999999
Q ss_pred CeEEEEECCCCe--------------EEEEeCCCCCCeeEEEEeCC--CCEEEEEECC-CEEEEEecCCceee----eee
Q 003445 207 RTVKFWDLETFE--------------LIGSAGPETSGVRCLTFNPD--GRTLLCGLHE-SLKVFSWEPIRCHD----AVD 265 (819)
Q Consensus 207 g~I~iwDl~~~~--------------~l~~~~~~~~~I~sl~fspd--g~~Lasgs~d-~I~Vwd~~~~~~~~----~~~ 265 (819)
|.|++||+.++. .+..+..|...|.+++|+|+ |++|++|+.+ .|++|++...+... .+.
T Consensus 251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 330 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT 330 (366)
T ss_dssp SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEEC
T ss_pred CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEc
Confidence 999999998764 47778889999999999999 9999999876 59999999876443 444
Q ss_pred cc--ccceeEeEe-cCCCEEEEEEcCCeEEEEEec
Q 003445 266 VG--WSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 266 ~~--~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld 297 (819)
.+ ...+..+.+ +++++|++++.||.|++|++.
T Consensus 331 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 331 HHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 44 466777766 689999999999999999985
No 31
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.2e-35 Score=322.37 Aligned_cols=287 Identities=15% Similarity=0.211 Sum_probs=239.6
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec--CCCCCeEEEEEcC-CCCEEEEEECCCeE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS--GHTSGIDSVSFDS-SEVLVAAGAASGTI 83 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~--~h~~~V~~l~fsp-dg~~Lasgs~DG~I 83 (819)
.....+.+|.+.|+|++|+|++.++|++|+.||.|+|||+.+++....+. +|...|.+++|+| ++.+|++++.||.|
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 34568899999999999999655899999999999999999888877765 6999999999999 78999999999999
Q ss_pred EEEECCCCeEEEEEcCC---CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EEE
Q 003445 84 KLWDLEEAKIVRTLTGH---RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR-WVV 159 (819)
Q Consensus 84 ~IWDl~s~~~i~~l~~h---~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~-~L~ 159 (819)
++||+.. ..+..+..+ ...|.+++|+|++++|++|+.||.|++||+ +++.+..+..|...|.+++|+|+++ +|+
T Consensus 144 ~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 221 (383)
T 3ei3_B 144 TLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMA 221 (383)
T ss_dssp EEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEE
T ss_pred EEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEE
Confidence 9999986 555555544 478999999999999999999999999999 5778889999999999999999999 999
Q ss_pred EEECCCeEEEEECCC----CeEEEEEecCCCCeEEEEEeC-CCCEEEEEECCCeEEEEECCCCeEEEEeCCC-------C
Q 003445 160 SGGEDNTVKLWDLTA----GKLLHDFKCHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLETFELIGSAGPE-------T 227 (819)
Q Consensus 160 sgs~Dg~I~IwDl~t----~~~i~~~~~h~~~I~sl~fsp-dg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~-------~ 227 (819)
+++.|+.|++||+++ +..+..+ .|...|.+++|+| ++.+|++++.|+.|++||+++++.+..+..| .
T Consensus 222 s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (383)
T 3ei3_B 222 TSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHL 300 (383)
T ss_dssp EEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTS
T ss_pred EEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccc
Confidence 999999999999997 6677766 5899999999999 9999999999999999999987765554322 2
Q ss_pred CC----------eeEEEEeCCCCEEEEEECCCEEEEEecCCceeeeeec--cccceeEeEe-cCCCEEEEEEcCCeEEEE
Q 003445 228 SG----------VRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDV--GWSRLSDLNV-HEGKLLGCSYNQSCVGVW 294 (819)
Q Consensus 228 ~~----------I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~--~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW 294 (819)
.. +..++|+|+|++ ..+.++.|++||+.+.++...+.. +...+..+.+ +++++|++++ |+.|+||
T Consensus 301 ~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw 378 (383)
T 3ei3_B 301 TPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIW 378 (383)
T ss_dssp CCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEE
T ss_pred cceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEE
Confidence 22 333455555555 222345799999999988877765 3345555444 7899999996 9999999
Q ss_pred EecC
Q 003445 295 VVDI 298 (819)
Q Consensus 295 ~ld~ 298 (819)
+++.
T Consensus 379 ~~~~ 382 (383)
T 3ei3_B 379 NRED 382 (383)
T ss_dssp ECC-
T ss_pred ecCC
Confidence 9874
No 32
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=319.73 Aligned_cols=243 Identities=21% Similarity=0.264 Sum_probs=213.7
Q ss_pred eccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEE----ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003445 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILS----LSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (819)
Q Consensus 13 ~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~----l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (819)
..|...|++++|+|+ + .|++|+.||.|+|||+.+++.+.. +.+|.+.|++++|+|++++|++|+.||+|++||+
T Consensus 79 ~~~~~~v~~~~~s~d-~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~ 156 (344)
T 4gqb_B 79 VQTEAGVADLTWVGE-R-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL 156 (344)
T ss_dssp EEESSCEEEEEEETT-T-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eccCCCEEEEEEeCC-C-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 346678999999984 3 588999999999999988876543 4489999999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCeEEEEEe--cCCCCeEEEEEcC-CCCEEEEEECC
Q 003445 89 EEAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYK--GHTRGVNAIRFTP-DGRWVVSGGED 164 (819)
Q Consensus 89 ~s~~~i~~l~~h~~~I~sl~fsp~g~-~Lasgs~Dg~I~IwDi~t~~~i~~~~--~h~~~I~sl~fsp-dg~~L~sgs~D 164 (819)
.+++.+..+.+|...|.+++|++++. +|++++.|+.|++||++++++...+. .|...+.+++|+| ++++|++|+.|
T Consensus 157 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d 236 (344)
T 4gqb_B 157 AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN 236 (344)
T ss_dssp TTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred CCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC
Confidence 99999999999999999999999885 78999999999999999999888764 4556799999999 56788999999
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCC-EE
Q 003445 165 NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHE-FLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR-TL 242 (819)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg-~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~-~L 242 (819)
|.|++||+++++++..+.+|...|++++|+|++ .+|++|+.|++|+|||+.+++++ .+.+|...|++++|+|++. +|
T Consensus 237 g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~ll 315 (344)
T 4gqb_B 237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLL 315 (344)
T ss_dssp SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEE
T ss_pred CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEE
Confidence 999999999999999999999999999999997 58999999999999999998865 5688999999999999986 45
Q ss_pred EEEECC-CEEEEEecCC
Q 003445 243 LCGLHE-SLKVFSWEPI 258 (819)
Q Consensus 243 asgs~d-~I~Vwd~~~~ 258 (819)
++++.| .|++|++.+.
T Consensus 316 as~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 316 TTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEEETTSCEEEEECCC-
T ss_pred EEEcCCCeEEEEECCCC
Confidence 677655 6999998764
No 33
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5e-35 Score=317.58 Aligned_cols=292 Identities=20% Similarity=0.244 Sum_probs=246.3
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeC---CCeEEEEECCCCceEEEe-cCCCCCeEEEEEcCC---CCEEEEEECC
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGE---DHKVNLWAIGKPNAILSL-SGHTSGIDSVSFDSS---EVLVAAGAAS 80 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~---Dg~V~IWdl~~~~~i~~l-~~h~~~V~~l~fspd---g~~Lasgs~D 80 (819)
....+.+|.+.|++++|+|++..++++|+. ||.|+|||+.+++..... .+|...|.+++|+|+ +.+|++|+.|
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 334568899999999999977677888876 999999999988765443 379999999999998 6999999999
Q ss_pred CeEEEEECCCCe-EEEEEcCCCCCeEEEEE------ecCCCEEEEEECCCcEEEEECCCCe-EEEEEecCCC----CeEE
Q 003445 81 GTIKLWDLEEAK-IVRTLTGHRSNCISVDF------HPFGEFFASGSLDTNLKIWDIRKKG-CIHTYKGHTR----GVNA 148 (819)
Q Consensus 81 G~I~IWDl~s~~-~i~~l~~h~~~I~sl~f------sp~g~~Lasgs~Dg~I~IwDi~t~~-~i~~~~~h~~----~I~s 148 (819)
|.|++||+.+++ .+..+.+|...|.+++| +|++++|++++.||.|++||++++. .+..+..|.. .+.+
T Consensus 90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 169 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT 169 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence 999999999988 88899999999999965 6789999999999999999999887 6777766554 7899
Q ss_pred EE----EcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeC---CCCEEEEEECCCeEEEEECCCCeEEE
Q 003445 149 IR----FTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHP---HEFLLATGSADRTVKFWDLETFELIG 221 (819)
Q Consensus 149 l~----fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fsp---dg~~Lasgs~Dg~I~iwDl~~~~~l~ 221 (819)
++ |+|++++|++++.||.|++||+++++.... ..|...|.+++|+| ++.+|++++.||.|++||+++++.+.
T Consensus 170 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 248 (357)
T 3i2n_A 170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK 248 (357)
T ss_dssp EEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT
T ss_pred EEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc
Confidence 98 788999999999999999999999987555 45889999999999 99999999999999999998766444
Q ss_pred Ee-----CCCCCCeeEEEEeCCCC-EEEEEECC-CEEEEEecCCc-------------------eeeeeeccccceeEeE
Q 003445 222 SA-----GPETSGVRCLTFNPDGR-TLLCGLHE-SLKVFSWEPIR-------------------CHDAVDVGWSRLSDLN 275 (819)
Q Consensus 222 ~~-----~~~~~~I~sl~fspdg~-~Lasgs~d-~I~Vwd~~~~~-------------------~~~~~~~~~s~i~~l~ 275 (819)
.+ ..|...|.+++|+|+++ +|++++.+ .+++|++.... ....+..+...+..+.
T Consensus 249 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~ 328 (357)
T 3i2n_A 249 GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLD 328 (357)
T ss_dssp EEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEE
T ss_pred ceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEE
Confidence 33 38899999999999998 78888776 59999998542 3445566667777777
Q ss_pred e-cCCCEEE-EEEcCCeEEEEEecCCc
Q 003445 276 V-HEGKLLG-CSYNQSCVGVWVVDISR 300 (819)
Q Consensus 276 ~-~dg~lLa-~~~~Dg~V~IW~ld~~~ 300 (819)
+ +++++|+ +++.|+.|+||++...+
T Consensus 329 ~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 329 WSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp ECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred EcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 6 6788887 89999999999997643
No 34
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.6e-34 Score=314.69 Aligned_cols=247 Identities=27% Similarity=0.474 Sum_probs=228.6
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC----ceEEEecCCCCCeEEEEEcCCCCEEEEEECCC
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----NAILSLSGHTSGIDSVSFDSSEVLVAAGAASG 81 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~----~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG 81 (819)
..++..+..|...|.+++|+| ++.+|++|+.|+.|++|++.+. .....+.+|.+.|.++.|++++. +++++.||
T Consensus 87 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~ 164 (340)
T 1got_B 87 TNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDT 164 (340)
T ss_dssp CCEEEEEECSSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTS
T ss_pred CCcceEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCC
Confidence 345678889999999999999 6789999999999999999765 35667889999999999998775 78999999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 003445 82 TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSG 161 (819)
Q Consensus 82 ~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sg 161 (819)
.|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.||.|++||++++.++..+.+|...|.+++|+|++++|++|
T Consensus 165 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~ 244 (340)
T 1got_B 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 244 (340)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred cEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEEec--CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCC
Q 003445 162 GEDNTVKLWDLTAGKLLHDFKC--HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG 239 (819)
Q Consensus 162 s~Dg~I~IwDl~t~~~i~~~~~--h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg 239 (819)
+.||.|++||+++++.+..+.. +...|.+++|+|+|.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|+|
T Consensus 245 s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg 324 (340)
T 1got_B 245 SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324 (340)
T ss_dssp ETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred cCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCC
Confidence 9999999999999988877753 23479999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEECC-CEEEEE
Q 003445 240 RTLLCGLHE-SLKVFS 254 (819)
Q Consensus 240 ~~Lasgs~d-~I~Vwd 254 (819)
.+|++|+.| .|+||+
T Consensus 325 ~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 325 MAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEcCCccEEecC
Confidence 999999877 599995
No 35
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.1e-33 Score=327.10 Aligned_cols=290 Identities=28% Similarity=0.521 Sum_probs=261.8
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
..+..+.+|...|++++|+| ++.+|++++.|+.|++|+. +++.+..+.+|...|.+++|+|++.+|++++.||.|++|
T Consensus 253 ~~~~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w 330 (577)
T 2ymu_A 253 QLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330 (577)
T ss_dssp CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Confidence 45678899999999999999 6778999999999999996 567888899999999999999999999999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003445 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (819)
Q Consensus 87 Dl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~ 166 (819)
|+.. +.+..+.+|...+.+++|+|++++|++++.||.|++||. +++.+..+.+|...|.+++|+|+|++|++++.|+.
T Consensus 331 ~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~ 408 (577)
T 2ymu_A 331 NRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 408 (577)
T ss_dssp ETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred eCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCE
Confidence 9764 456778899999999999999999999999999999995 67788899999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003445 167 VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (819)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs 246 (819)
|++||. +++.+..+.+|...|++++|+|++.+|++++.|+.|++||. +++.+..+..|...|.+++|+|+|++|++++
T Consensus 409 v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~ 486 (577)
T 2ymu_A 409 VKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 486 (577)
T ss_dssp EEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred EEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 999995 57788889999999999999999999999999999999996 5677888889999999999999999999998
Q ss_pred CC-CEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCCceee
Q 003445 247 HE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 247 ~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~~~p 303 (819)
.+ .|++|+. ++++...+..+...+..+.+ +++++|++++.|+.|++|+.+...+..
T Consensus 487 ~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~ 544 (577)
T 2ymu_A 487 DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 544 (577)
T ss_dssp TTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEE
T ss_pred CCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEE
Confidence 77 5999995 56777777777788888776 789999999999999999976544443
No 36
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.9e-33 Score=315.77 Aligned_cols=288 Identities=20% Similarity=0.367 Sum_probs=253.0
Q ss_pred ceEEEEeccCCCE-EEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 7 YKLQEFVAHSSTV-NCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (819)
Q Consensus 7 ~kl~~~~~H~~~V-~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (819)
.....+.+|...| .|+.++ +.+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|++++ +|++|+.||+|++
T Consensus 112 ~~~~~l~~h~~~v~~~~~~~---~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~v 187 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRV 187 (464)
T ss_dssp CEEEEEECCSSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEE
T ss_pred cceEEEcCCCCCcEEEEEEC---CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEE
Confidence 3567899999885 676664 4589999999999999999999999999999999999999988 9999999999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEe--cCCCEEEEEECCCcEEEEECCCCe-----------------------EEEEEe
Q 003445 86 WDLEEAKIVRTLTGHRSNCISVDFH--PFGEFFASGSLDTNLKIWDIRKKG-----------------------CIHTYK 140 (819)
Q Consensus 86 WDl~s~~~i~~l~~h~~~I~sl~fs--p~g~~Lasgs~Dg~I~IwDi~t~~-----------------------~i~~~~ 140 (819)
||+++++.+..+.+|...|.+++|+ +++.+|++|+.||.|++||++++. .+..+.
T Consensus 188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 9999999999999999999999998 577899999999999999998765 255677
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEE
Q 003445 141 GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI 220 (819)
Q Consensus 141 ~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l 220 (819)
+|...+.++ +++++++++|+.||.|++||+++++.+..+.+|...|.+++|+|++.+|++|+.||.|++||+++++.+
T Consensus 268 ~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~ 345 (464)
T 3v7d_B 268 GHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM 345 (464)
T ss_dssp CCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred CccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence 888888877 567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEEecCC
Q 003445 221 GSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDIS 299 (819)
Q Consensus 221 ~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~ 299 (819)
..+..|...|.++.|+ +.+|++++.+ .+++||+.....................++++++++++ |+.|++|++..+
T Consensus 346 ~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 346 YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp EEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred EEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 9999999999999997 5788888776 59999999876554443332222223447889999888 899999999998
Q ss_pred ceee
Q 003445 300 RIEP 303 (819)
Q Consensus 300 ~~~p 303 (819)
+...
T Consensus 423 ~~~~ 426 (464)
T 3v7d_B 423 KLVH 426 (464)
T ss_dssp CEEE
T ss_pred cEEe
Confidence 7653
No 37
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=7.4e-35 Score=325.26 Aligned_cols=279 Identities=18% Similarity=0.213 Sum_probs=244.7
Q ss_pred EEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc
Q 003445 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT 98 (819)
Q Consensus 19 V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~ 98 (819)
+++++|+| ++++|++|+.||.|++||+.+++....+..| ..+....|++++++|++|+.||.|++||+.+++....+.
T Consensus 59 ~~~~~~s~-~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 59 GKGNTFEK-VGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp CTTCEEEE-EETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred ccceeeee-cCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 45899999 5667999999999999999887776666655 445555789999999999999999999999999998888
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 003445 99 GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLL 178 (819)
Q Consensus 99 ~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i 178 (819)
+|...|.+++|+|++++|++|+.||.|++||+++++.+..+.+|...|.+++|+|++++|++++.||.|++||+++++.+
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEec---CCCCeEEEE---------------------EeCCCCEEEEEECCCeEEEEECCCCeEEEEeC-CCCCCeeEE
Q 003445 179 HDFKC---HEGQIQCID---------------------FHPHEFLLATGSADRTVKFWDLETFELIGSAG-PETSGVRCL 233 (819)
Q Consensus 179 ~~~~~---h~~~I~sl~---------------------fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~-~~~~~I~sl 233 (819)
..+.. +...|.+++ |+|++.+|++|+.||.|++||+++++.+..+. .|...|.++
T Consensus 217 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 296 (420)
T 3vl1_A 217 HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSL 296 (420)
T ss_dssp EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEE
T ss_pred EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeE
Confidence 98875 334455554 57899999999999999999999998877764 477899999
Q ss_pred EEeCCCC-EEEEEECC-CEEEEEecCCce-eeeeec-cccceeEeEecCCCEEEEEEcCCeEEEEEecCC
Q 003445 234 TFNPDGR-TLLCGLHE-SLKVFSWEPIRC-HDAVDV-GWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDIS 299 (819)
Q Consensus 234 ~fspdg~-~Lasgs~d-~I~Vwd~~~~~~-~~~~~~-~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~ 299 (819)
+|+|++. +|++|+.+ .|++||+...+. ...+.. +...+..+.++++++|++++.|+.|++|++...
T Consensus 297 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 297 TVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred EEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence 9999999 99988876 599999988654 455544 566778888899999999999999999999873
No 38
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.8e-33 Score=304.00 Aligned_cols=247 Identities=23% Similarity=0.472 Sum_probs=225.5
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
.+..|.+|...|++++|+| ++.+|++|+.|++|+|||+.+++.+..+.+|...|.+++|+|++.+|++|+.||+|++||
T Consensus 57 ~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd 135 (319)
T 3frx_A 57 PVRSFKGHSHIVQDCTLTA-DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135 (319)
T ss_dssp EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred cceEEeCCcccEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 4668899999999999999 778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEecC------CCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 003445 88 LEEAKIVRTLTGHRSNCISVDFHPF------GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSG 161 (819)
Q Consensus 88 l~s~~~i~~l~~h~~~I~sl~fsp~------g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sg 161 (819)
+. ++.+..+.+|...|.++.|.|. +.+|++++.|+.|++||+++.+....+.+|...|.+++|+|+|++|++|
T Consensus 136 ~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~ 214 (319)
T 3frx_A 136 IK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214 (319)
T ss_dssp TT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEE
T ss_pred CC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEE
Confidence 96 5677888999999999999985 4489999999999999999999999999999999999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC--------CCCCeeEE
Q 003445 162 GEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP--------ETSGVRCL 233 (819)
Q Consensus 162 s~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~--------~~~~I~sl 233 (819)
+.||.|++||+.+++.+..+.. ...|.+++|+|++.+|++++.+ .+++|++.....+..+.. +...+.++
T Consensus 215 ~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 292 (319)
T 3frx_A 215 GKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL 292 (319)
T ss_dssp ETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEE
T ss_pred eCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEE
Confidence 9999999999999999998875 5689999999999999998854 599999998887776643 34578999
Q ss_pred EEeCCCCEEEEEECC-CEEEEEecCC
Q 003445 234 TFNPDGRTLLCGLHE-SLKVFSWEPI 258 (819)
Q Consensus 234 ~fspdg~~Lasgs~d-~I~Vwd~~~~ 258 (819)
+|+|||++|++|+.| .|+||++.+.
T Consensus 293 ~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 293 AWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EECCCCCEEEEeecCceEEEEEEeec
Confidence 999999999999877 5999998653
No 39
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-35 Score=326.28 Aligned_cols=285 Identities=19% Similarity=0.328 Sum_probs=248.4
Q ss_pred ccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC----CceEEEecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEEC
Q 003445 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK----PNAILSLSGHTSGIDSVSFDSS-EVLVAAGAASGTIKLWDL 88 (819)
Q Consensus 14 ~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~----~~~i~~l~~h~~~V~~l~fspd-g~~Lasgs~DG~I~IWDl 88 (819)
.|...|++++|+| ++.+|++|+.||.|++||+.. .+.+..+.+|...|.+++|+|+ +.+|++++.||.|++||+
T Consensus 65 ~~~~~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 65 QVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp CCSSCEEEEEECS-SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred ecCCceEEEEECC-CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 5889999999999 677899999999999999987 4588889999999999999998 899999999999999999
Q ss_pred CCCe------EEE---EEcCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCeEEEEEecC------CCCeEEEEEc
Q 003445 89 EEAK------IVR---TLTGHRSNCISVDFHPF-GEFFASGSLDTNLKIWDIRKKGCIHTYKGH------TRGVNAIRFT 152 (819)
Q Consensus 89 ~s~~------~i~---~l~~h~~~I~sl~fsp~-g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h------~~~I~sl~fs 152 (819)
.+++ ... .+..|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+..| ...|.+++|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH 223 (416)
T ss_dssp TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence 9876 332 23678999999999999 789999999999999999999999998876 7889999999
Q ss_pred CCC-CEEEEEECCC---eEEEEECCCC-eEEEEEe-cCCCCeEEEEEeC-CCCEEEEEECCCeEEEEECCCCeEEEEeCC
Q 003445 153 PDG-RWVVSGGEDN---TVKLWDLTAG-KLLHDFK-CHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLETFELIGSAGP 225 (819)
Q Consensus 153 pdg-~~L~sgs~Dg---~I~IwDl~t~-~~i~~~~-~h~~~I~sl~fsp-dg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~ 225 (819)
|++ .+|++++.|+ .|++||++++ ..+..+. +|...|.+++|+| ++.+|++++.||.|++||+++++.+..+..
T Consensus 224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~ 303 (416)
T 2pm9_A 224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA 303 (416)
T ss_dssp SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC
T ss_pred CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC
Confidence 997 6899999998 9999999986 6677777 8999999999999 899999999999999999999999999999
Q ss_pred CCCCeeEEEEeCCC-CEEEEEECC-CEEEEEecCCceeeeeec-----------------------------------cc
Q 003445 226 ETSGVRCLTFNPDG-RTLLCGLHE-SLKVFSWEPIRCHDAVDV-----------------------------------GW 268 (819)
Q Consensus 226 ~~~~I~sl~fspdg-~~Lasgs~d-~I~Vwd~~~~~~~~~~~~-----------------------------------~~ 268 (819)
|...|.+++|+|++ .+|++++.+ .|++|++........... ..
T Consensus 304 ~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (416)
T 2pm9_A 304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYG 383 (416)
T ss_dssp SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTC
T ss_pred CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcccc
Confidence 99999999999999 899988776 599999987653321100 12
Q ss_pred cceeE-eEecCCCEEEEEEcCCeEEEEEecCC
Q 003445 269 SRLSD-LNVHEGKLLGCSYNQSCVGVWVVDIS 299 (819)
Q Consensus 269 s~i~~-l~~~dg~lLa~~~~Dg~V~IW~ld~~ 299 (819)
..+.. ...++|++|++++.|+.|+||++.+.
T Consensus 384 ~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 384 EPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 23323 34489999999999999999998864
No 40
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.2e-33 Score=303.34 Aligned_cols=248 Identities=19% Similarity=0.325 Sum_probs=216.8
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC--CceEEEecCCCCCeEEEEEcCC--CCEEEEEECCCeEE
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK--PNAILSLSGHTSGIDSVSFDSS--EVLVAAGAASGTIK 84 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~--~~~i~~l~~h~~~V~~l~fspd--g~~Lasgs~DG~I~ 84 (819)
+..+.+|.+.|++++|+| ++++|++|+.|++|+|||+.. .+.+..+.+|.+.|.+++|+++ +++|++|+.||+|+
T Consensus 2 ~~~~~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CEECCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred ceeccCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 346789999999999999 678899999999999999964 4678899999999999999864 89999999999999
Q ss_pred EEECCCCe--EEEEEcCCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCCe--EEEEEecCCCCeEEEEEcCC----
Q 003445 85 LWDLEEAK--IVRTLTGHRSNCISVDFHPF--GEFFASGSLDTNLKIWDIRKKG--CIHTYKGHTRGVNAIRFTPD---- 154 (819)
Q Consensus 85 IWDl~s~~--~i~~l~~h~~~I~sl~fsp~--g~~Lasgs~Dg~I~IwDi~t~~--~i~~~~~h~~~I~sl~fspd---- 154 (819)
+||+.+++ .+..+.+|...|.+++|+|+ +.+|++++.||.|++||++++. ....+.+|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 99998874 56678889999999999997 8899999999999999998763 24567889999999999997
Q ss_pred ---------CCEEEEEECCCeEEEEECCCCe----EEEEEecCCCCeEEEEEeCCC---CEEEEEECCCeEEEEECCCCe
Q 003445 155 ---------GRWVVSGGEDNTVKLWDLTAGK----LLHDFKCHEGQIQCIDFHPHE---FLLATGSADRTVKFWDLETFE 218 (819)
Q Consensus 155 ---------g~~L~sgs~Dg~I~IwDl~t~~----~i~~~~~h~~~I~sl~fspdg---~~Lasgs~Dg~I~iwDl~~~~ 218 (819)
+++|++|+.|+.|++||+++++ ....+.+|...|.+++|+|++ .+|++++.|++|++||++...
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~ 240 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ 240 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence 5799999999999999998765 667788999999999999984 899999999999999998642
Q ss_pred ---EEEEe--CCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecC
Q 003445 219 ---LIGSA--GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP 257 (819)
Q Consensus 219 ---~l~~~--~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~ 257 (819)
....+ ..+...|.+++|+|+|++|++++.| .+++|+...
T Consensus 241 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 22233 4677889999999999999988876 599999864
No 41
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.7e-33 Score=297.58 Aligned_cols=260 Identities=25% Similarity=0.486 Sum_probs=233.9
Q ss_pred CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEE
Q 003445 49 PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIW 128 (819)
Q Consensus 49 ~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~Iw 128 (819)
......+.+|...|.+++|+|++++|++|+.||.|++||+.+++....+.+|...|.+++|+|++++|++|+.||.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCe
Q 003445 129 DIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRT 208 (819)
Q Consensus 129 Di~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~ 208 (819)
|+++++++..+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+..|...|.+++|+|++.+|++++.||.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 172 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEeC-CCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeeccccce----eEeEecCCCEE
Q 003445 209 VKFWDLETFELIGSAG-PETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRL----SDLNVHEGKLL 282 (819)
Q Consensus 209 I~iwDl~~~~~l~~~~-~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i----~~l~~~dg~lL 282 (819)
|++||+++++.+..+. .+...+..++|+|++++|++++.+ .+++||+...++...+..+.... ..+...++.+|
T Consensus 173 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (312)
T 4ery_A 173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 252 (312)
T ss_dssp EEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEE
T ss_pred EEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEE
Confidence 9999999998887764 456789999999999999998876 59999999988877765443322 22333678999
Q ss_pred EEEEcCCeEEEEEecCCceeeeeecc
Q 003445 283 GCSYNQSCVGVWVVDISRIEPYTIGS 308 (819)
Q Consensus 283 a~~~~Dg~V~IW~ld~~~~~p~~~~~ 308 (819)
++|+.|+.|++|++..++......++
T Consensus 253 ~sg~~dg~i~vwd~~~~~~~~~~~~h 278 (312)
T 4ery_A 253 VSGSEDNLVYIWNLQTKEIVQKLQGH 278 (312)
T ss_dssp EECCTTSCEEEEETTTCCEEEEECCC
T ss_pred EEECCCCEEEEEECCCchhhhhhhcc
Confidence 99999999999999988766544443
No 42
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.3e-33 Score=306.70 Aligned_cols=247 Identities=26% Similarity=0.470 Sum_probs=227.1
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC------ceEEEecCCCCCeEEEEEcCCCCEEEEEECC
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP------NAILSLSGHTSGIDSVSFDSSEVLVAAGAAS 80 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~------~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D 80 (819)
.+...+..|...|.+++|+| ++.+|++|+.|+.+++|++... .....+.+|...|.++.|++++..|++++.|
T Consensus 97 ~~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D 175 (354)
T 2pbi_B 97 NKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGD 175 (354)
T ss_dssp CEEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETT
T ss_pred CcceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCC
Confidence 34567788999999999999 6788999999999999998543 3456677899999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEEEEEec--CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 003445 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHP--FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWV 158 (819)
Q Consensus 81 G~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp--~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L 158 (819)
|+|++||+++++.+..+.+|...|.+++|+| ++++|++|+.||.|++||+++++++..+.+|...|.+++|+|++.+|
T Consensus 176 ~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l 255 (354)
T 2pbi_B 176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAF 255 (354)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEE
Confidence 9999999999999999999999999999988 46899999999999999999999999999999999999999999999
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecC--CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEe
Q 003445 159 VSGGEDNTVKLWDLTAGKLLHDFKCH--EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN 236 (819)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~i~~~~~h--~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fs 236 (819)
++|+.|+.|++||++.++.+..+..+ ...+.+++|+|++.+|++|+.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus 256 ~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s 335 (354)
T 2pbi_B 256 ASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS 335 (354)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC
Confidence 99999999999999999887777643 3478999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEECCC-EEEEE
Q 003445 237 PDGRTLLCGLHES-LKVFS 254 (819)
Q Consensus 237 pdg~~Lasgs~d~-I~Vwd 254 (819)
|+|++|++|+.|+ ++||+
T Consensus 336 pdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 336 PDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEcCCCCEEecC
Confidence 9999999998774 89985
No 43
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-34 Score=320.18 Aligned_cols=288 Identities=13% Similarity=0.245 Sum_probs=240.8
Q ss_pred cceEEEE-eccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC---Cc---eEEEecCCCCCeEEEEEcCCCCEEEEEE
Q 003445 6 AYKLQEF-VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK---PN---AILSLSGHTSGIDSVSFDSSEVLVAAGA 78 (819)
Q Consensus 6 ~~kl~~~-~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~---~~---~i~~l~~h~~~V~~l~fspdg~~Lasgs 78 (819)
...+..+ .+|.+.|++++|+|.++.+|++|+.||.|+|||+.+ +. ....+ +|...|.+++|+|++.+|++|+
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s 130 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSS 130 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEe
Confidence 3456788 899999999999995567899999999999999865 32 23333 4999999999999999999999
Q ss_pred CCCeEEEEECC---CCeEEEEEcC------------CCCCeEEEE--EecCCCEEEEEECCCcEEEEECCCCeEEEEEec
Q 003445 79 ASGTIKLWDLE---EAKIVRTLTG------------HRSNCISVD--FHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG 141 (819)
Q Consensus 79 ~DG~I~IWDl~---s~~~i~~l~~------------h~~~I~sl~--fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~ 141 (819)
.||.|++||++ +++.+..+.+ +...+.++. +++++.+|++|+.||.|++||+++++++..+..
T Consensus 131 ~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 210 (437)
T 3gre_A 131 KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN 210 (437)
T ss_dssp TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence 99999999995 5544443332 455667776 557899999999999999999999999999988
Q ss_pred --CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEeC----CCCEEEEEECCCeEEEEEC
Q 003445 142 --HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK-CHEGQIQCIDFHP----HEFLLATGSADRTVKFWDL 214 (819)
Q Consensus 142 --h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~-~h~~~I~sl~fsp----dg~~Lasgs~Dg~I~iwDl 214 (819)
|...|++++|+|++++|++|+.||.|++||+++++.+..+. .|...|.+++|+| ++.+|++|+.||.|++||+
T Consensus 211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 290 (437)
T 3gre_A 211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF 290 (437)
T ss_dssp CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence 88999999999999999999999999999999999999886 6788999996665 6789999999999999999
Q ss_pred CCCeEEEEeCC--------------------------CCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeec-
Q 003445 215 ETFELIGSAGP--------------------------ETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDV- 266 (819)
Q Consensus 215 ~~~~~l~~~~~--------------------------~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~- 266 (819)
++++.+..+.. |...|.+++|+ ++++|++|+.| .|++|++.+.++...+..
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 369 (437)
T 3gre_A 291 VKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISP 369 (437)
T ss_dssp TTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC
T ss_pred CCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecc
Confidence 99998877653 44558899999 77889988755 699999998876655543
Q ss_pred ------------------------------------cccceeEeEe-cC--CCEEEEEEcCCeEEEEE
Q 003445 267 ------------------------------------GWSRLSDLNV-HE--GKLLGCSYNQSCVGVWV 295 (819)
Q Consensus 267 ------------------------------------~~s~i~~l~~-~d--g~lLa~~~~Dg~V~IW~ 295 (819)
+...+..+.+ ++ +.+|++|+.||.|+||.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 370 SRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 4555666655 33 77999999999999994
No 44
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.2e-33 Score=309.73 Aligned_cols=290 Identities=19% Similarity=0.365 Sum_probs=248.0
Q ss_pred eEEEEeccCCCEE--EEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecC-CCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003445 8 KLQEFVAHSSTVN--CLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSG-HTSGIDSVSFDSSEVLVAAGAASGTIK 84 (819)
Q Consensus 8 kl~~~~~H~~~V~--~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~-h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (819)
++....+|...+. +++|++ + .+++++.||.|++||+.+++....+.. |...|.+++|+|++.+|++|+.||.|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~s~--~-~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 159 (401)
T 4aez_A 83 RVLDAPGIIDDYYLNLLDWSN--L-NVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVD 159 (401)
T ss_dssp EEEECTTCCCCTTCBCEEECT--T-SEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeeeCCCCcCCceEEEEeecC--C-CEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEE
Confidence 3445557776544 455553 3 377788999999999999998887775 889999999999999999999999999
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC-CCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 003445 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR-KKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE 163 (819)
Q Consensus 85 IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~-t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~ 163 (819)
+||+.+++.+..+.+|...|.+++|+ +.+|++|+.||.|++||++ ....+..+.+|...|.+++|+|++++|++|+.
T Consensus 160 iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 237 (401)
T 4aez_A 160 IYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN 237 (401)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence 99999999999999999999999995 6799999999999999999 56778889999999999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCC-CEEEEEE--CCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCC
Q 003445 164 DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHE-FLLATGS--ADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR 240 (819)
Q Consensus 164 Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg-~~Lasgs--~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~ 240 (819)
||.|++||+++++.+..+..|...|.+++|+|++ .++++|+ .|+.|++||+.+++.+..+. +...|.+++|+|+++
T Consensus 238 d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~ 316 (401)
T 4aez_A 238 DNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSK 316 (401)
T ss_dssp TSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSS
T ss_pred CCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCC
Confidence 9999999999999999999999999999999976 5666665 79999999999999988886 457899999999999
Q ss_pred EEEEEE---CCCEEEEEecCCceeee--eeccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCCceee
Q 003445 241 TLLCGL---HESLKVFSWEPIRCHDA--VDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 241 ~Lasgs---~d~I~Vwd~~~~~~~~~--~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~~~p 303 (819)
+|++++ ++.+++|++...+.... +..+...+..+.+ +++++|++++.||.|++|++..++...
T Consensus 317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence 999854 44699999998665554 4455566777666 689999999999999999998877543
No 45
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.3e-34 Score=325.95 Aligned_cols=290 Identities=16% Similarity=0.217 Sum_probs=234.7
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce--EEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEE
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA--ILSLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLW 86 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~--i~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IW 86 (819)
....+|...|+||+|+|.++.+||+|+.||.|+|||+.+++. ...+.+|.+.|++|+|+| ++.+|++|+.||+|++|
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 466789999999999998888999999999999999976654 445568999999999998 68999999999999999
Q ss_pred ECCCCeEEEEEcCC--CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEEC
Q 003445 87 DLEEAKIVRTLTGH--RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR-WVVSGGE 163 (819)
Q Consensus 87 Dl~s~~~i~~l~~h--~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~-~L~sgs~ 163 (819)
|++++........+ ...+.+++|+|++.+|++|+.||.|++||++. +.+..+.+|...|.+++|+|++. +|++|+.
T Consensus 193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~ 271 (435)
T 4e54_B 193 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASV 271 (435)
T ss_dssp ETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEET
T ss_pred eccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecC
Confidence 99876554444333 34578999999999999999999999999864 55677889999999999999876 7889999
Q ss_pred CCeEEEEECCCCeEEEE---EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCC------CeeEEE
Q 003445 164 DNTVKLWDLTAGKLLHD---FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETS------GVRCLT 234 (819)
Q Consensus 164 Dg~I~IwDl~t~~~i~~---~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~------~I~sl~ 234 (819)
|+.|++||+++++.... ..+|...|++++|+|+|.+|++|+.||.|++||+.++.....+..|.. .+....
T Consensus 272 d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (435)
T 4e54_B 272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAA 351 (435)
T ss_dssp TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCE
T ss_pred cceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEE
Confidence 99999999988764333 346889999999999999999999999999999999887777655532 234567
Q ss_pred EeCCCCEEEEEEC-------------CCEEEEEecCCceeeeee-ccccceeEe--EecCCCEEEEEEcCCeEEEEEecC
Q 003445 235 FNPDGRTLLCGLH-------------ESLKVFSWEPIRCHDAVD-VGWSRLSDL--NVHEGKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 235 fspdg~~Lasgs~-------------d~I~Vwd~~~~~~~~~~~-~~~s~i~~l--~~~dg~lLa~~~~Dg~V~IW~ld~ 298 (819)
|+|++.+++++.. ..|++|+..+++....+. .+...+..+ +.++|.+|++|+ |+.|+||++..
T Consensus 352 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 352 WHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp ECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred EcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 8888887777642 249999999988776653 344445444 337889988765 88999999988
Q ss_pred Cce
Q 003445 299 SRI 301 (819)
Q Consensus 299 ~~~ 301 (819)
++.
T Consensus 431 gk~ 433 (435)
T 4e54_B 431 ART 433 (435)
T ss_dssp ---
T ss_pred Cee
Confidence 764
No 46
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3e-32 Score=309.21 Aligned_cols=286 Identities=21% Similarity=0.397 Sum_probs=256.8
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEc--CCCCEEEEEECCCeE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD--SSEVLVAAGAASGTI 83 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fs--pdg~~Lasgs~DG~I 83 (819)
...+..+.+|.+.|++++|+++ + +|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +++.+|++|+.||.|
T Consensus 152 ~~~~~~~~~h~~~V~~l~~~~~-~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i 229 (464)
T 3v7d_B 152 KKFLLQLSGHDGGVWALKYAHG-G-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 229 (464)
T ss_dssp TEEEEEECCCSSCEEEEEECST-T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCE
T ss_pred CcEEEEEeCCCcCEEEEEEcCC-C-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcE
Confidence 4456788999999999999984 4 89999999999999999999999999999999999998 578899999999999
Q ss_pred EEEECCCCe-----------------------EEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 003445 84 KLWDLEEAK-----------------------IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK 140 (819)
Q Consensus 84 ~IWDl~s~~-----------------------~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~ 140 (819)
++||+.++. .+..+.+|...+.++ +++++++++|+.||.|++||+++++++..+.
T Consensus 230 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 307 (464)
T 3v7d_B 230 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 307 (464)
T ss_dssp EEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 999998765 356778899988887 5668999999999999999999999999999
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEE
Q 003445 141 GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI 220 (819)
Q Consensus 141 ~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l 220 (819)
+|...|.+++|+|++++|++|+.||.|++||+++++.+..+.+|...|.++.|+ +.+|++|+.||.|++||+.++...
T Consensus 308 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~ 385 (464)
T 3v7d_B 308 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK 385 (464)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCcee
Confidence 999999999999999999999999999999999999999999999999999997 579999999999999999998876
Q ss_pred EEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeee-eeccccceeEeEecCCCEEEEEEcCCeEEEEEecC
Q 003445 221 GSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDA-VDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 221 ~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~-~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~ 298 (819)
.... +...+..++|++++++|++|+++.+++|++++++.... ...+...+..+.+.++.++++++.|+.+.+|.+|.
T Consensus 386 ~~~~-~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~ldf 463 (464)
T 3v7d_B 386 FSYH-HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILDF 463 (464)
T ss_dssp EEEE-CTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEEEEC
T ss_pred eeec-CCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEEeec
Confidence 6653 55678889999999999999988899999999988764 45566778888888777888888999988888775
No 47
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1e-32 Score=334.84 Aligned_cols=295 Identities=20% Similarity=0.317 Sum_probs=267.5
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (819)
....+.|.+|.+.|+|++|+| ++.+|++|+.||.|+|||+.+++.+..+.+|...|.+++|+|++++|++|+.||.|++
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred cccceeeecCCCceEEEEECC-CCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 345678899999999999999 6788999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcC-CCCEEEEEEC
Q 003445 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTP-DGRWVVSGGE 163 (819)
Q Consensus 86 WDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~-~~i~~~~~h~~~I~sl~fsp-dg~~L~sgs~ 163 (819)
||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||++++ .....+.+|...|.+++|+| ++.+|++++.
T Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred EECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999987 77788899999999999999 8899999999
Q ss_pred CCeEEEEECCCCeEEEEEecCC-CCeEEEEEeC--CCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCC
Q 003445 164 DNTVKLWDLTAGKLLHDFKCHE-GQIQCIDFHP--HEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR 240 (819)
Q Consensus 164 Dg~I~IwDl~t~~~i~~~~~h~-~~I~sl~fsp--dg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~ 240 (819)
||.|++||+.+++....+..+. ..+.+++|+| ++.+|++|+.||.|++||+.+++.+..+..|...|.+++|+|+|.
T Consensus 162 dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 241 (814)
T 3mkq_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241 (814)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence 9999999999888777776654 8899999999 999999999999999999999999999999999999999999999
Q ss_pred EEEEEECC-CEEEEEecCCceeeeeeccccceeEeEe-cCCC-EEEEEEcCCeEEEEEecCCce
Q 003445 241 TLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGK-LLGCSYNQSCVGVWVVDISRI 301 (819)
Q Consensus 241 ~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~-lLa~~~~Dg~V~IW~ld~~~~ 301 (819)
+|++++.+ .+++|+..+.+....+..+...+..+.+ +++. ++++++.++.+.+|++.....
T Consensus 242 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP 305 (814)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSC
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCc
Confidence 99999865 6999999999888888887778888876 5554 234455577889998876543
No 48
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-32 Score=307.35 Aligned_cols=239 Identities=25% Similarity=0.464 Sum_probs=219.0
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003445 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL 97 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l 97 (819)
.|++++|+| ++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+|++.+|++|+.||+|++||+.+++....+
T Consensus 125 ~v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 203 (393)
T 1erj_A 125 YIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203 (393)
T ss_dssp BEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred eEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence 499999999 6788999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred cCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeEEEEE-------ecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 98 TGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTY-------KGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (819)
Q Consensus 98 ~~h~~~I~sl~fsp-~g~~Lasgs~Dg~I~IwDi~t~~~i~~~-------~~h~~~I~sl~fspdg~~L~sgs~Dg~I~I 169 (819)
. +...+.+++|+| ++.+|++|+.||.|++||++++..+..+ .+|...|.+++|+|+|++|++|+.||.|++
T Consensus 204 ~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 204 S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282 (393)
T ss_dssp E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred E-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 6 567899999999 8999999999999999999999888776 578999999999999999999999999999
Q ss_pred EECCCC------------eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeC
Q 003445 170 WDLTAG------------KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP 237 (819)
Q Consensus 170 wDl~t~------------~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fsp 237 (819)
||+++. .+...+.+|...|.+++|+|++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|++
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 362 (393)
T ss_dssp EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecC
Confidence 999753 45567788999999999999999999999999999999999999999999999999999986
Q ss_pred ------CCCEEEEEECC-CEEEEEecCC
Q 003445 238 ------DGRTLLCGLHE-SLKVFSWEPI 258 (819)
Q Consensus 238 ------dg~~Lasgs~d-~I~Vwd~~~~ 258 (819)
++.+|++|+.| .|+||++...
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CcCcCCCCCEEEEECCCCcEEECccccc
Confidence 68899999877 5999998643
No 49
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-34 Score=319.86 Aligned_cols=286 Identities=19% Similarity=0.327 Sum_probs=251.9
Q ss_pred CCCEEEEEEeeCCCcEEEEE----------eCCCeEEEEECCCCc---eEEEecCCCCCeEEEEEcCCCCEEEEEECCCe
Q 003445 16 SSTVNCLKIGRKSSRVLVTG----------GEDHKVNLWAIGKPN---AILSLSGHTSGIDSVSFDSSEVLVAAGAASGT 82 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latg----------s~Dg~V~IWdl~~~~---~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~ 82 (819)
...|.+++|+|++..+|++| +.|+.|+|||+.++. .+..+ .|...|.+++|+|++.+|++|+.||.
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCe
Confidence 35789999999666699999 889999999998775 33333 58899999999999999999999999
Q ss_pred EEEEECCC----CeEEEEEcCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCe------EEEE---EecCCCCeEE
Q 003445 83 IKLWDLEE----AKIVRTLTGHRSNCISVDFHPF-GEFFASGSLDTNLKIWDIRKKG------CIHT---YKGHTRGVNA 148 (819)
Q Consensus 83 I~IWDl~s----~~~i~~l~~h~~~I~sl~fsp~-g~~Lasgs~Dg~I~IwDi~t~~------~i~~---~~~h~~~I~s 148 (819)
|++||+.. .+.+..+.+|...|.+++|+|+ +.+|++++.||.|++||+++++ .... +..|...|.+
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 170 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVIS 170 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCE
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeE
Confidence 99999987 4588889999999999999998 8999999999999999999876 3332 3578899999
Q ss_pred EEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEecC------CCCeEEEEEeCCC-CEEEEEECCC---eEEEEECCCC
Q 003445 149 IRFTPD-GRWVVSGGEDNTVKLWDLTAGKLLHDFKCH------EGQIQCIDFHPHE-FLLATGSADR---TVKFWDLETF 217 (819)
Q Consensus 149 l~fspd-g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h------~~~I~sl~fspdg-~~Lasgs~Dg---~I~iwDl~~~ 217 (819)
++|+|+ +.+|++++.||.|++||+++++.+..+..+ ...|.+++|+|++ .+|++++.|+ .|++||++++
T Consensus 171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 999998 789999999999999999999999988876 7889999999997 6999999998 9999999986
Q ss_pred -eEEEEeC-CCCCCeeEEEEeC-CCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeEe-cCC-CEEEEEEcCCeE
Q 003445 218 -ELIGSAG-PETSGVRCLTFNP-DGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEG-KLLGCSYNQSCV 291 (819)
Q Consensus 218 -~~l~~~~-~~~~~I~sl~fsp-dg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg-~lLa~~~~Dg~V 291 (819)
..+..+. .|...|.+++|+| ++.+|++++.+ .+++|++.+.++...+..+...+..+.+ +++ .+|++++.|+.|
T Consensus 251 ~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i 330 (416)
T 2pm9_A 251 NTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKI 330 (416)
T ss_dssp TSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEE
T ss_pred CCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcE
Confidence 5666777 8999999999999 89999998876 5999999999988888877777777777 566 899999999999
Q ss_pred EEEEecCCcee
Q 003445 292 GVWVVDISRIE 302 (819)
Q Consensus 292 ~IW~ld~~~~~ 302 (819)
++|++......
T Consensus 331 ~iw~~~~~~~~ 341 (416)
T 2pm9_A 331 EVQTLQNLTNT 341 (416)
T ss_dssp EEEESCCCCCS
T ss_pred EEEEccCCCCC
Confidence 99999876543
No 50
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.2e-33 Score=297.63 Aligned_cols=284 Identities=20% Similarity=0.284 Sum_probs=246.7
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK-- 92 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~-- 92 (819)
|.+.|.+++|+| ++++++++..++.+.+|............+|...|.+++|+|++++|++++ ||.|++||+.+++
T Consensus 8 ~~~~v~~~~~s~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 8 GSKPAYSFHVTA-DGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK 85 (337)
T ss_dssp EEEECCEEEECS-SSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred cCCceeEEEECC-CCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence 567899999999 667788887777777776655555555568999999999999999999998 9999999998764
Q ss_pred -EEEEEc--CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003445 93 -IVRTLT--GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG--CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTV 167 (819)
Q Consensus 93 -~i~~l~--~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~--~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I 167 (819)
.+..+. +|...|.+++|+|++++|++++.||.|++||+.+++ ....+..|...|.+++|+|++++|++++.||.|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 233333 789999999999999999999999999999999887 667788899999999999999999999999999
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC
Q 003445 168 KLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (819)
Q Consensus 168 ~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (819)
++||+++++.+..+..|...|.+++|+|++.+|++++.||.|++||+++++.+..+. +...+.+++|+|++++|++++.
T Consensus 166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~ 244 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME 244 (337)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET
T ss_pred EEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcC
Confidence 999999999999999999999999999999999999999999999999999887764 5678999999999999999886
Q ss_pred C-CEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCCcee
Q 003445 248 E-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIE 302 (819)
Q Consensus 248 d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~~~ 302 (819)
+ .+++|++...+... +..+...+..+.+ +++++|++++.|+.|++|++..++..
T Consensus 245 ~~~i~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 245 SSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp TSCEEEEETTSSCEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CCcEEEEECCCCCeEE-EcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 5 69999998877653 3444556666666 68999999999999999999988765
No 51
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=9.8e-33 Score=295.89 Aligned_cols=252 Identities=19% Similarity=0.280 Sum_probs=224.5
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC----ceEEEecCCCCCeEEEEEcC--CCCEEEEEECCCeE
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----NAILSLSGHTSGIDSVSFDS--SEVLVAAGAASGTI 83 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~----~~i~~l~~h~~~V~~l~fsp--dg~~Lasgs~DG~I 83 (819)
..+.+|.+.|+|++|+| ++.+|++|+.||.|++||+.++ +....+.+|...|.+++|+| ++.+|++|+.||.|
T Consensus 5 ~~~~gH~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CEECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccCcccccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 35679999999999999 7778999999999999999866 46677889999999999999 69999999999999
Q ss_pred EEEECCCC---------eEEEEEcCCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCCeEEEEEe------------
Q 003445 84 KLWDLEEA---------KIVRTLTGHRSNCISVDFHPF--GEFFASGSLDTNLKIWDIRKKGCIHTYK------------ 140 (819)
Q Consensus 84 ~IWDl~s~---------~~i~~l~~h~~~I~sl~fsp~--g~~Lasgs~Dg~I~IwDi~t~~~i~~~~------------ 140 (819)
++||+.++ +.+..+.+|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999887 678889999999999999999 9999999999999999998876443322
Q ss_pred -cCCCCeEEEEEcCC---CCEEEEEECCCeEEEEECCCCeE--EEEEecCCCCeEEEEEeCCC----CEEEEEECCCeEE
Q 003445 141 -GHTRGVNAIRFTPD---GRWVVSGGEDNTVKLWDLTAGKL--LHDFKCHEGQIQCIDFHPHE----FLLATGSADRTVK 210 (819)
Q Consensus 141 -~h~~~I~sl~fspd---g~~L~sgs~Dg~I~IwDl~t~~~--i~~~~~h~~~I~sl~fspdg----~~Lasgs~Dg~I~ 210 (819)
.|...+.+++|+|+ +.+|++++.++.+.+|+...++. +..+.+|...|++++|+|++ .+|++|+.||.|+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 57788999999997 99999999999999999888765 66777899999999999998 8999999999999
Q ss_pred EEECCCC----------------------------------------------eEEEEeCCCCCCeeEEEEeCCCCEEEE
Q 003445 211 FWDLETF----------------------------------------------ELIGSAGPETSGVRCLTFNPDGRTLLC 244 (819)
Q Consensus 211 iwDl~~~----------------------------------------------~~l~~~~~~~~~I~sl~fspdg~~Las 244 (819)
+||++.+ +.+..+..|...|++++|+|+|++|++
T Consensus 244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 323 (351)
T 3f3f_A 244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS 323 (351)
T ss_dssp EEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE
T ss_pred EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE
Confidence 9999864 677778889999999999999999999
Q ss_pred EECC-CEEEEEecCCceee
Q 003445 245 GLHE-SLKVFSWEPIRCHD 262 (819)
Q Consensus 245 gs~d-~I~Vwd~~~~~~~~ 262 (819)
++.| .|++|++.+.+...
T Consensus 324 ~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 324 AGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp EETTSCEEEEEECTTSCEE
T ss_pred ecCCCcEEEEecCcCcchh
Confidence 9877 59999999865443
No 52
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=302.70 Aligned_cols=295 Identities=16% Similarity=0.271 Sum_probs=247.8
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec-------------CCCCCeEEEEEcC-CCCE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS-------------GHTSGIDSVSFDS-SEVL 73 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~-------------~h~~~V~~l~fsp-dg~~ 73 (819)
....+.+|.+.|+|++|+|.++.+|++|+.||.|++||+.++.....+. +|...|.+++|+| ++.+
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 4456788999999999999567789999999999999998776544432 5999999999999 7789
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCC---CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEE
Q 003445 74 VAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG---EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIR 150 (819)
Q Consensus 74 Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g---~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~ 150 (819)
|++++.||.|++||+.+++.+..+. +...+.++.|++.+ .++++++.||.|++||+++++.+..+..|...|.+++
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~ 193 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS 193 (408)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEE
T ss_pred EEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEE
Confidence 9999999999999999999988887 77889999999854 4999999999999999999999999999999999999
Q ss_pred EcCCCC-EEEEEECCCeEEEEECCCCe-EEEEE---------------ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEE
Q 003445 151 FTPDGR-WVVSGGEDNTVKLWDLTAGK-LLHDF---------------KCHEGQIQCIDFHPHEFLLATGSADRTVKFWD 213 (819)
Q Consensus 151 fspdg~-~L~sgs~Dg~I~IwDl~t~~-~i~~~---------------~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwD 213 (819)
|+|++. .|++|+.||.|++||++++. .+..+ ..|...|.+++|+|++.+|++++.||.|++||
T Consensus 194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 273 (408)
T 4a11_B 194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273 (408)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence 999998 58899999999999998765 34444 46788999999999999999999999999999
Q ss_pred CCCCeEEEEeCCC------CCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEE
Q 003445 214 LETFELIGSAGPE------TSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSY 286 (819)
Q Consensus 214 l~~~~~l~~~~~~------~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~ 286 (819)
+.+++.......+ ............+.+++++.++.+++|++.+.+....+..+...+..+.+ +++++|++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 353 (408)
T 4a11_B 274 SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS 353 (408)
T ss_dssp TTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred CCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEEC
Confidence 9988765443322 11223333444566777777778999999999999888888888888776 6889999999
Q ss_pred cCCeEEEEEecCCceee
Q 003445 287 NQSCVGVWVVDISRIEP 303 (819)
Q Consensus 287 ~Dg~V~IW~ld~~~~~p 303 (819)
.||.|++|+++..+..+
T Consensus 354 ~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 354 RDCNILAWVPSLYEPVP 370 (408)
T ss_dssp TTSCEEEEEECC-----
T ss_pred CCCeEEEEeCCCCCccC
Confidence 99999999999877543
No 53
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.3e-32 Score=311.18 Aligned_cols=277 Identities=22% Similarity=0.494 Sum_probs=246.4
Q ss_pred EeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 003445 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA 91 (819)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~ 91 (819)
..+|...|.|++| ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++| ++.+|++|+.||.|++||+.++
T Consensus 129 ~~~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 129 RSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp CCSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred ccCCCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence 3456778999988 5678999999999999999999999999999999999999 7889999999999999999999
Q ss_pred eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEE---EEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003445 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI---HTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVK 168 (819)
Q Consensus 92 ~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i---~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~ 168 (819)
+.+..+.+|...|.+++|+ +.++++|+.||.|++||++++..+ ..+.+|...|.+++| ++++|++|+.||.|+
T Consensus 204 ~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~ 279 (435)
T 1p22_A 204 EMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIK 279 (435)
T ss_dssp CEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEE
T ss_pred cEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEE
Confidence 9999999999999999997 569999999999999999987654 677889999999999 688999999999999
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC
Q 003445 169 LWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (819)
Q Consensus 169 IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (819)
+||+++++.+..+.+|...|.++.|+ +.+|++|+.||.|++||+++++.+..+..|...|.+++| ++.+|++|+.+
T Consensus 280 vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~d 355 (435)
T 1p22_A 280 VWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYD 355 (435)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETT
T ss_pred EEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCC
Confidence 99999999999999999999999994 679999999999999999999999999999999999999 78899988876
Q ss_pred -CEEEEEecCCc---------eeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEEecCCcee
Q 003445 249 -SLKVFSWEPIR---------CHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIE 302 (819)
Q Consensus 249 -~I~Vwd~~~~~---------~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~ 302 (819)
.|++||+.... +...+..+...+..+.+ ++.+|++++.||.|++|++......
T Consensus 356 g~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 356 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-DEFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp SCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE-CSSCEEECCSSSEEEEEC-------
T ss_pred CcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe-CCCEEEEEeCCCEEEEEECCCCCCc
Confidence 59999997655 66677777777888877 8889999999999999999876543
No 54
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=299.10 Aligned_cols=247 Identities=19% Similarity=0.350 Sum_probs=205.4
Q ss_pred EEEE-ec-cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC-------CceEEEecCCCCCeEEEEEcCCCCEEEEEEC
Q 003445 9 LQEF-VA-HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-------PNAILSLSGHTSGIDSVSFDSSEVLVAAGAA 79 (819)
Q Consensus 9 l~~~-~~-H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~-------~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~ 79 (819)
+..+ .+ |...|++++|+| ++.+|++|+.|+.|+|||+.. .+.+..+.+|...|.+++|+|++++|++|+.
T Consensus 49 ~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~ 127 (330)
T 2hes_X 49 IDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR 127 (330)
T ss_dssp EEEECTTCCCSCEEEEEECT-TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET
T ss_pred EEEEecCCccCCEEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence 3345 34 999999999999 678999999999999999842 3567788999999999999999999999999
Q ss_pred CCeEEEEECCC----CeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC--eEEEEEecCCCCeEEEEEcC
Q 003445 80 SGTIKLWDLEE----AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK--GCIHTYKGHTRGVNAIRFTP 153 (819)
Q Consensus 80 DG~I~IWDl~s----~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~--~~i~~~~~h~~~I~sl~fsp 153 (819)
|++|++||+.. .+.+..+.+|...|.+++|+|++.+|++|+.|+.|++||..++ +++..+.+|...|.+++|+|
T Consensus 128 D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~ 207 (330)
T 2hes_X 128 DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK 207 (330)
T ss_dssp TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC
T ss_pred CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC
Confidence 99999999943 3577889999999999999999999999999999999999876 67888999999999999999
Q ss_pred C--CCEEEEEECCCeEEEEECCCC--------eEEEEEec-CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe--EE
Q 003445 154 D--GRWVVSGGEDNTVKLWDLTAG--------KLLHDFKC-HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE--LI 220 (819)
Q Consensus 154 d--g~~L~sgs~Dg~I~IwDl~t~--------~~i~~~~~-h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~--~l 220 (819)
+ +.+|++|+.|+.|++||+..+ .+...+.. |...|.+++|++++ +|++++.||.|++||..+++ .+
T Consensus 208 ~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~ 286 (330)
T 2hes_X 208 TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVF 286 (330)
T ss_dssp SSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEE
T ss_pred CCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEE
Confidence 8 779999999999999998754 34445554 88999999999765 89999999999999998874 33
Q ss_pred EE-eCCCCC-CeeEEEEeC--CCCEEEEEECCC-EEEEEecC
Q 003445 221 GS-AGPETS-GVRCLTFNP--DGRTLLCGLHES-LKVFSWEP 257 (819)
Q Consensus 221 ~~-~~~~~~-~I~sl~fsp--dg~~Lasgs~d~-I~Vwd~~~ 257 (819)
.. ...|.. .|.+++|+| ++++|++|+.|+ |++|+++.
T Consensus 287 ~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 287 AKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred eccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 33 356766 899999999 789999988774 99999764
No 55
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=300.76 Aligned_cols=248 Identities=22% Similarity=0.395 Sum_probs=215.2
Q ss_pred eccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC--ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003445 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP--NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE 90 (819)
Q Consensus 13 ~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~--~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s 90 (819)
.+|...|++++|+| ++++|++|+.|+.|+||++..+ +.+..+.+|...|.+++|+|++++|++|+.||.|++||+.+
T Consensus 58 ~~h~~~v~~~~~sp-~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~ 136 (345)
T 3fm0_A 58 EGHQRTVRKVAWSP-CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136 (345)
T ss_dssp SSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred cccCCcEEEEEECC-CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence 68999999999999 6789999999999999998766 45778899999999999999999999999999999999986
Q ss_pred C---eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003445 91 A---KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG--CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (819)
Q Consensus 91 ~---~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~--~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg 165 (819)
+ ..+..+.+|...|.+++|+|++.+|++|+.|+.|++||.+++. +...+.+|...|.+++|+|+|++|++|+.|+
T Consensus 137 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~ 216 (345)
T 3fm0_A 137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR 216 (345)
T ss_dssp TSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC
Confidence 5 4567788999999999999999999999999999999998875 4578889999999999999999999999999
Q ss_pred eEEEEECCCC---------------eEEEEEec-CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe---------EE
Q 003445 166 TVKLWDLTAG---------------KLLHDFKC-HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE---------LI 220 (819)
Q Consensus 166 ~I~IwDl~t~---------------~~i~~~~~-h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~---------~l 220 (819)
.|++||.... +++..+.+ |...|.+++|+|++..|++++.|+.|++|+..... ..
T Consensus 217 ~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~ 296 (345)
T 3fm0_A 217 TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTA 296 (345)
T ss_dssp CEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEE
T ss_pred eEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEe
Confidence 9999996321 34445554 78899999999999999999999999999987542 12
Q ss_pred EEeCCCCCCeeEEEEeCCC-CEEEEEECC-CEEEEEecCCcee
Q 003445 221 GSAGPETSGVRCLTFNPDG-RTLLCGLHE-SLKVFSWEPIRCH 261 (819)
Q Consensus 221 ~~~~~~~~~I~sl~fspdg-~~Lasgs~d-~I~Vwd~~~~~~~ 261 (819)
.....|...|.+++|+|++ .+|++|+.| .|++|+....+..
T Consensus 297 ~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 297 HLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp EETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred eecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 2346789999999999998 489888876 6999999876643
No 56
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.2e-33 Score=309.04 Aligned_cols=246 Identities=18% Similarity=0.251 Sum_probs=211.6
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceE----EEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI----LSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i----~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (819)
....+|...|++++|+| ++. +++++.||.|+|||+.+++.. ....+|...|.+++|+|++++|++|+.||.|++
T Consensus 88 ~~~~~~~~~V~~~~~s~-d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~i 165 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWVS-EKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV 165 (357)
T ss_dssp SEEEECSSCEEEEEEET-TTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred cccCCCCCCEEEEEEcC-CCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 34567999999999999 444 566788999999999877654 244589999999999999999999999999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCeEEEEEe--cCCCCeEEEEEcCC-CCEEEEE
Q 003445 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYK--GHTRGVNAIRFTPD-GRWVVSG 161 (819)
Q Consensus 86 WDl~s~~~i~~l~~h~~~I~sl~fsp~g~-~Lasgs~Dg~I~IwDi~t~~~i~~~~--~h~~~I~sl~fspd-g~~L~sg 161 (819)
||+.+++.+..+.+|...|.+++|++++. ++++++.||.|++||+++++.+..+. .|...+.+++|+|+ +.+|++|
T Consensus 166 wd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g 245 (357)
T 4g56_B 166 WDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG 245 (357)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEE
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEe
Confidence 99999999999999999999999999875 78999999999999999988766543 46678999999997 5688999
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeC-CC
Q 003445 162 GEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHE-FLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP-DG 239 (819)
Q Consensus 162 s~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg-~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fsp-dg 239 (819)
+.|+.|++||+++++.+..+.+|...|++++|+|++ .+|++|+.|++|+|||+++++++..+ .|...|++++|+| ++
T Consensus 246 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~ 324 (357)
T 4g56_B 246 DETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDH 324 (357)
T ss_dssp ESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSST
T ss_pred ecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCC
Confidence 999999999999999999999999999999999987 68999999999999999999887655 7889999999998 79
Q ss_pred CEEEEEECC-CEEEEEecCC
Q 003445 240 RTLLCGLHE-SLKVFSWEPI 258 (819)
Q Consensus 240 ~~Lasgs~d-~I~Vwd~~~~ 258 (819)
.+|++++.| .|++|++...
T Consensus 325 ~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 325 SKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp TEEEEEETTSCEEEEECC--
T ss_pred CEEEEEcCCCeEEEEECCCC
Confidence 999988876 6999998653
No 57
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.8e-31 Score=302.05 Aligned_cols=283 Identities=25% Similarity=0.513 Sum_probs=255.8
Q ss_pred eEEEEeccCCCE-EEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 8 KLQEFVAHSSTV-NCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 8 kl~~~~~H~~~V-~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
....+.+|.+.| .|+.+ ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +.+|++|+.||.|++|
T Consensus 110 ~~~~l~~h~~~v~~~~~~---~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCLQF---CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVW 184 (445)
T ss_dssp CCEEEECSTTSCEEEEEE---ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred eeEEecccCCCcEEEEEE---cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEE
Confidence 456789999875 66555 35789999999999999999999999999999999999997 6699999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003445 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (819)
Q Consensus 87 Dl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~ 166 (819)
|+.+++.+..+.+|...|.++.|+ ++++++|+.||.|++||+++++.+..+.+|...|.+++| +++++++|+.||.
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~ 260 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFM 260 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSC
T ss_pred ECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCE
Confidence 999999999999999999999996 678999999999999999999999999999999999999 6889999999999
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003445 167 VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (819)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs 246 (819)
|++||+++++.+..+.+|...|.++.| ++.++++|+.||.|++||+++++.+..+..|...+.++.++ +.+|++|+
T Consensus 261 i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 336 (445)
T 2ovr_B 261 VKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN 336 (445)
T ss_dssp EEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEE
T ss_pred EEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEe
Confidence 999999999999999999999999999 78899999999999999999999999999999999988875 56888887
Q ss_pred CC-CEEEEEecCCceeeeeec---cccceeEeEecCCCEEEEEEcCCeEEEEEecCCceeee
Q 003445 247 HE-SLKVFSWEPIRCHDAVDV---GWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEPY 304 (819)
Q Consensus 247 ~d-~I~Vwd~~~~~~~~~~~~---~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~p~ 304 (819)
.+ .|++||+.+.++...+.. +...+..+.+ ++.++++++.||.|++|++..++....
T Consensus 337 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~ 397 (445)
T 2ovr_B 337 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF-NKNFVITSSDDGTVKLWDLKTGEFIRN 397 (445)
T ss_dssp TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE-CSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEE-CCCEEEEEeCCCeEEEEECCCCceeee
Confidence 66 699999999888877765 5566777766 579999999999999999998876543
No 58
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.6e-32 Score=318.88 Aligned_cols=293 Identities=12% Similarity=0.216 Sum_probs=262.1
Q ss_pred eccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC----ceEEEecCCCCC-eEEEEEcC--CCCEEEEEECCCeEEE
Q 003445 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----NAILSLSGHTSG-IDSVSFDS--SEVLVAAGAASGTIKL 85 (819)
Q Consensus 13 ~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~----~~i~~l~~h~~~-V~~l~fsp--dg~~Lasgs~DG~I~I 85 (819)
..|.+.|++++|+| ++++|++++ ++.|.|||+.++ +....+.+|... |.+++|+| ++++|++|+.||.|++
T Consensus 15 ~~~~~~v~~~~~sp-dg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v 92 (615)
T 1pgu_A 15 STQRNFTTHLSYDP-TTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 92 (615)
T ss_dssp CCCTTCCCCCEEET-TTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred CCccCceeEEEECC-CCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence 35889999999999 667788887 789999999988 899999999999 99999999 9999999999999999
Q ss_pred EECCCC--------eEEEEEcCCCCCeEEEEEecCCCEEEEEECC----CcEEEEECCCCeEEEEEecCCCCeEEEEEcC
Q 003445 86 WDLEEA--------KIVRTLTGHRSNCISVDFHPFGEFFASGSLD----TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP 153 (819)
Q Consensus 86 WDl~s~--------~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~D----g~I~IwDi~t~~~i~~~~~h~~~I~sl~fsp 153 (819)
||+.++ +.+..+..|...|.+++|+|++++|++++.+ +.|++|| .++.+..+.+|...|.+++|+|
T Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~ 170 (615)
T 1pgu_A 93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQ 170 (615)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECS
T ss_pred EeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECC
Confidence 999754 7778888999999999999999999999987 6888888 6678889999999999999999
Q ss_pred CCC-EEEEEECCCeEEEEECCCCeEEEEEecCCC---CeEEEEEeCC-CCEEEEEECCCeEEEEECCCCeEEEEe-C---
Q 003445 154 DGR-WVVSGGEDNTVKLWDLTAGKLLHDFKCHEG---QIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIGSA-G--- 224 (819)
Q Consensus 154 dg~-~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~---~I~sl~fspd-g~~Lasgs~Dg~I~iwDl~~~~~l~~~-~--- 224 (819)
++. .+++++.||.|++||+.+++.+..+..|.. .|.+++|+|+ +.+|++++.||.|++||+.+++.+..+ .
T Consensus 171 ~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 250 (615)
T 1pgu_A 171 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE 250 (615)
T ss_dssp SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB
T ss_pred CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccc
Confidence 998 899999999999999999999999999998 9999999999 999999999999999999999999988 6
Q ss_pred CCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeecc----ccceeEeEecCCCEEEEEEcCCeEEEEEecCC
Q 003445 225 PETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVG----WSRLSDLNVHEGKLLGCSYNQSCVGVWVVDIS 299 (819)
Q Consensus 225 ~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~----~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~ 299 (819)
.|...|.+++|+ ++.+|++++.+ .+++|++.+.++...+... ...+..+.++++.++++++.|+.|++|++..+
T Consensus 251 ~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~ 329 (615)
T 1pgu_A 251 PVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHD 329 (615)
T ss_dssp CCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEE
T ss_pred ccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCC
Confidence 889999999999 99999999876 5999999998888777655 24455556679999999999999999999886
Q ss_pred ceeeeeecccc
Q 003445 300 RIEPYTIGSVT 310 (819)
Q Consensus 300 ~~~p~~~~~~~ 310 (819)
+......++..
T Consensus 330 ~~~~~~~~~~~ 340 (615)
T 1pgu_A 330 EVLKTISGHNK 340 (615)
T ss_dssp EEEEEECCCSS
T ss_pred cEEEEEeCCCC
Confidence 65544444433
No 59
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.2e-32 Score=307.48 Aligned_cols=279 Identities=15% Similarity=0.238 Sum_probs=235.7
Q ss_pred CEEEE-EEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003445 18 TVNCL-KIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96 (819)
Q Consensus 18 ~V~~l-afsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~ 96 (819)
.+.++ .|++ ++++|++|+.||.|++||+.+++....+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+..
T Consensus 98 ~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 176 (420)
T 3vl1_A 98 DYTAVDTAKL-QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT 176 (420)
T ss_dssp CEEEEEEECS-SSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEE
T ss_pred CceEEEEEec-CCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceE
Confidence 44444 5676 778899999999999999999999888889999999999999999999999999999999999999999
Q ss_pred EcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEec---CCCCeEE---------------------EEEc
Q 003445 97 LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG---HTRGVNA---------------------IRFT 152 (819)
Q Consensus 97 l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~---h~~~I~s---------------------l~fs 152 (819)
+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+.. |...+.+ ++|+
T Consensus 177 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s 256 (420)
T 3vl1_A 177 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 256 (420)
T ss_dssp EECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS
T ss_pred EcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc
Confidence 999999999999999999999999999999999999999998875 3344444 4557
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEeCCCC-EEEEEECCCeEEEEECCCCeE-EEEeCC-CCC
Q 003445 153 PDGRWVVSGGEDNTVKLWDLTAGKLLHDFK-CHEGQIQCIDFHPHEF-LLATGSADRTVKFWDLETFEL-IGSAGP-ETS 228 (819)
Q Consensus 153 pdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~-~h~~~I~sl~fspdg~-~Lasgs~Dg~I~iwDl~~~~~-l~~~~~-~~~ 228 (819)
|++++|++|+.||.|++||+++++.+..+. .|...|.+++|+|++. +|++|+.||.|++||+++++. +..+.. +..
T Consensus 257 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~ 336 (420)
T 3vl1_A 257 TYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGT 336 (420)
T ss_dssp CTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTS
T ss_pred CCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCC
Confidence 899999999999999999999998877775 4788999999999998 999999999999999998753 555554 667
Q ss_pred CeeEEEEeCCCCEEEEEECC-CEEEEEecCCc---------eeeeeeccccceeEeEe-cCCC---EEEEEEcCCeEEEE
Q 003445 229 GVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIR---------CHDAVDVGWSRLSDLNV-HEGK---LLGCSYNQSCVGVW 294 (819)
Q Consensus 229 ~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~---------~~~~~~~~~s~i~~l~~-~dg~---lLa~~~~Dg~V~IW 294 (819)
.|.++.| +++++|++++.+ .+++|++.... ....+..+...+..+.+ ++++ .+++.+.+|.+.+|
T Consensus 337 ~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~ 415 (420)
T 3vl1_A 337 PINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALY 415 (420)
T ss_dssp CEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEE
T ss_pred CceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEE
Confidence 7888855 578889988776 59999997632 12223344455666665 6777 77888889999999
Q ss_pred EecC
Q 003445 295 VVDI 298 (819)
Q Consensus 295 ~ld~ 298 (819)
+++.
T Consensus 416 ~~~~ 419 (420)
T 3vl1_A 416 NLSN 419 (420)
T ss_dssp ESCC
T ss_pred eccC
Confidence 9864
No 60
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.1e-32 Score=345.62 Aligned_cols=301 Identities=21% Similarity=0.385 Sum_probs=262.9
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
....+.+|.+.|++++|+| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.||.|++||
T Consensus 607 ~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQ-DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 685 (1249)
T ss_dssp CSEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ceEEEecccccEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 3457889999999999999 678899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEec--CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003445 88 LEEAKIVRTLTGHRSNCISVDFHP--FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (819)
Q Consensus 88 l~s~~~i~~l~~h~~~I~sl~fsp--~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg 165 (819)
+.+++.+..+.+|...|.+++|+| ++.++++|+.||.|++||+++++++..+.+|...|.+++|+|++++|++++.||
T Consensus 686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg 765 (1249)
T 3sfz_A 686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG 765 (1249)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSS
T ss_pred CCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCC
Confidence 999999999999999999999999 455899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEEe-------------------------------------------------------cCCCCeEE
Q 003445 166 TVKLWDLTAGKLLHDFK-------------------------------------------------------CHEGQIQC 190 (819)
Q Consensus 166 ~I~IwDl~t~~~i~~~~-------------------------------------------------------~h~~~I~s 190 (819)
.|++||+.+++....+. +|...|.+
T Consensus 766 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~ 845 (1249)
T 3sfz_A 766 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY 845 (1249)
T ss_dssp EEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCE
T ss_pred eEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEE
Confidence 99999998765544332 56778999
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCcee--------
Q 003445 191 IDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCH-------- 261 (819)
Q Consensus 191 l~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~-------- 261 (819)
++|+|++.++++++.||.|++||+.++..+..+..|...|.+++|+|+|++|++++.+ .+++|+.......
T Consensus 846 ~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~ 925 (1249)
T 3sfz_A 846 CDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE 925 (1249)
T ss_dssp EEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccce
Confidence 9999999999999999999999999999999999999999999999999999998877 5999997532110
Q ss_pred ---------------------eee--------eccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCCceeeeeeccc
Q 003445 262 ---------------------DAV--------DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSV 309 (819)
Q Consensus 262 ---------------------~~~--------~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~~~p~~~~~~ 309 (819)
... ......+..+.+ +++.++++|+.+|.|++|++..++......++.
T Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~ 1003 (1249)
T 3sfz_A 926 IDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK 1003 (1249)
T ss_dssp EEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCS
T ss_pred eeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCC
Confidence 000 011123344443 789999999999999999999887665444443
No 61
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.6e-32 Score=298.92 Aligned_cols=246 Identities=24% Similarity=0.460 Sum_probs=212.5
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
....+.+|...|++++|+| ++.+|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++|+.||.|++||
T Consensus 68 ~~~~l~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd 146 (343)
T 2xzm_R 68 PHKALTGHNHFVSDLALSQ-ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146 (343)
T ss_dssp EEEEECCCSSCEEEEEECS-STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEE
T ss_pred ccchhccCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEe
Confidence 3567889999999999999 677899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEc---CCCCCeEEEEEecCC----------CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC
Q 003445 88 LEEAKIVRTLT---GHRSNCISVDFHPFG----------EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD 154 (819)
Q Consensus 88 l~s~~~i~~l~---~h~~~I~sl~fsp~g----------~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspd 154 (819)
+.... ..... +|...|.+++|+|++ .+|++++.||.|++|| ...+....+.+|...|.+++|+|+
T Consensus 147 ~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~ 224 (343)
T 2xzm_R 147 ILGEC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPN 224 (343)
T ss_dssp SSSCE-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTT
T ss_pred ccCCc-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCC
Confidence 98443 33333 688899999999987 7999999999999999 456778889999999999999999
Q ss_pred CCEEEEEECCCeEEEEECCC-CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEE--EeC-------
Q 003445 155 GRWVVSGGEDNTVKLWDLTA-GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIG--SAG------- 224 (819)
Q Consensus 155 g~~L~sgs~Dg~I~IwDl~t-~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~--~~~------- 224 (819)
|++|++|+.||.|++||+.. ......+. +...|.+++|+|++.++++++ |+.|++||+.+++... .+.
T Consensus 225 g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~ 302 (343)
T 2xzm_R 225 GKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKA 302 (343)
T ss_dssp SSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEE-SSCEEEEESSSCCSCSEEECCCCSGGGB
T ss_pred CCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEEC-CCCEEEEEeCCCCCCceEEeecCcchhh
Confidence 99999999999999999954 44444443 556799999999999887664 7889999998765432 333
Q ss_pred ----CCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCC
Q 003445 225 ----PETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPI 258 (819)
Q Consensus 225 ----~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~ 258 (819)
.|...|.+++|+|+|++|++|+.| .|++|+++++
T Consensus 303 ~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 303 EGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp TTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 567789999999999999999877 4999998653
No 62
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1e-32 Score=298.46 Aligned_cols=277 Identities=13% Similarity=0.068 Sum_probs=243.2
Q ss_pred EeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc---eEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEE
Q 003445 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN---AILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWD 87 (819)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~---~i~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWD 87 (819)
..+|.+.|++++|+| ++.+|++|+.||.|+||++.++. ....+.+|...|.+++|+|+++ +|++|+.||.|++||
T Consensus 7 ~~~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 358999999999999 67789999999999999998776 3455568999999999999999 999999999999999
Q ss_pred C-CCCeEEEEEcC--CCCCeEEEEEecCCCEEEEEECCCcEEEEECCC---------CeEEEEEecCCCCeEEEEEcCCC
Q 003445 88 L-EEAKIVRTLTG--HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK---------KGCIHTYKGHTRGVNAIRFTPDG 155 (819)
Q Consensus 88 l-~s~~~i~~l~~--h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t---------~~~i~~~~~h~~~I~sl~fspdg 155 (819)
+ .+++. ..+.+ |...|.+++|+| +.+|++++.|+.|++||+++ ++++..+. |...|.+++|+|++
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR 162 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE
T ss_pred eccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc
Confidence 9 87765 67788 999999999999 99999999999999999987 66666666 88999999999887
Q ss_pred CEEEEEECCCeEEEEECCC-Ce--EEEEEecCCCCeEEEEEeC-CCCEEEEEECCCeEEEEECCCC------eEEEEeCC
Q 003445 156 RWVVSGGEDNTVKLWDLTA-GK--LLHDFKCHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLETF------ELIGSAGP 225 (819)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t-~~--~i~~~~~h~~~I~sl~fsp-dg~~Lasgs~Dg~I~iwDl~~~------~~l~~~~~ 225 (819)
+++++.|+.|++||+++ +. .......|...|.+++|+| ++.+|++++.||.|++||++.. +....+..
T Consensus 163 --l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 240 (342)
T 1yfq_A 163 --LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp --EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred --EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeec
Confidence 99999999999999998 54 3334446788999999999 9999999999999999999876 66667766
Q ss_pred CCC---------CeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeecc-ccceeEeEecCCCEEEEEEcCCe-EEE
Q 003445 226 ETS---------GVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVG-WSRLSDLNVHEGKLLGCSYNQSC-VGV 293 (819)
Q Consensus 226 ~~~---------~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~-~s~i~~l~~~dg~lLa~~~~Dg~-V~I 293 (819)
|.. .|.+++|+|++++|++++.+ .|++||+.+.+....+..+ ...+..+. +++++|++++.||. .+.
T Consensus 241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~-~~~~~l~s~s~Dg~~~~~ 319 (342)
T 1yfq_A 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA-CSDNILCLATSDDTFKTN 319 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE-ECSSEEEEEEECTHHHHC
T ss_pred ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec-CCCCeEEEEecCCccccc
Confidence 654 99999999999999998876 6999999999988888877 78888888 99999999999998 444
Q ss_pred EE
Q 003445 294 WV 295 (819)
Q Consensus 294 W~ 295 (819)
|.
T Consensus 320 ~~ 321 (342)
T 1yfq_A 320 AA 321 (342)
T ss_dssp SS
T ss_pred cc
Confidence 44
No 63
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-32 Score=298.42 Aligned_cols=251 Identities=19% Similarity=0.323 Sum_probs=222.1
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC--CCceEEEecCCCCCeEEEEEcCC--CCEEEEEECCCeE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG--KPNAILSLSGHTSGIDSVSFDSS--EVLVAAGAASGTI 83 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~--~~~~i~~l~~h~~~V~~l~fspd--g~~Lasgs~DG~I 83 (819)
.+..+.+|.+.|++++|+| ++.+|++|+.||.|+|||+. +.+.+..+.+|...|.+++|+++ +.+|++|+.||.|
T Consensus 3 ~~~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp --CCEEECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccEEecCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 3457889999999999999 67789999999999999997 56777889999999999999987 8999999999999
Q ss_pred EEEECCCCe--EEEEEcCCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCC--eEEEEEecCCCCeEEEEEcC----
Q 003445 84 KLWDLEEAK--IVRTLTGHRSNCISVDFHPF--GEFFASGSLDTNLKIWDIRKK--GCIHTYKGHTRGVNAIRFTP---- 153 (819)
Q Consensus 84 ~IWDl~s~~--~i~~l~~h~~~I~sl~fsp~--g~~Lasgs~Dg~I~IwDi~t~--~~i~~~~~h~~~I~sl~fsp---- 153 (819)
++||+.+++ .+..+..|...|.+++|+|+ +.+|++++.||.|++||++.+ .....+..|...|.+++|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999987 77888889999999999999 999999999999999999887 34556778999999999999
Q ss_pred ---------CCCEEEEEECCCeEEEEECCCCe----EEEEEecCCCCeEEEEEeCC---CCEEEEEECCCeEEEEECCCC
Q 003445 154 ---------DGRWVVSGGEDNTVKLWDLTAGK----LLHDFKCHEGQIQCIDFHPH---EFLLATGSADRTVKFWDLETF 217 (819)
Q Consensus 154 ---------dg~~L~sgs~Dg~I~IwDl~t~~----~i~~~~~h~~~I~sl~fspd---g~~Lasgs~Dg~I~iwDl~~~ 217 (819)
++.+|++++.||.|++||++++. ....+.+|...|.+++|+|+ +.+|++++.||.|++||+.++
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 69999999999999999998764 45677789999999999999 899999999999999999986
Q ss_pred e-----EEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCc
Q 003445 218 E-----LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIR 259 (819)
Q Consensus 218 ~-----~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~ 259 (819)
. .+.....+...|.+++|+|+|++|++++.+ .+++|++....
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 3 222334478899999999999999988766 59999998543
No 64
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5e-33 Score=309.45 Aligned_cols=253 Identities=24% Similarity=0.483 Sum_probs=226.1
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc-------eEEEecCCCCCeEEEEEcCC-CCEEEEE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-------AILSLSGHTSGIDSVSFDSS-EVLVAAG 77 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~-------~i~~l~~h~~~V~~l~fspd-g~~Lasg 77 (819)
..++..+.+|...|.+++|+| ++.+|++|+.|+.+++|++.... ....+.+|.+.|.++.|.|+ +..|++|
T Consensus 98 ~~~~~~~~~h~~~v~~~~~s~-~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~ 176 (380)
T 3iz6_a 98 SQKTHAIKLHCPWVMECAFAP-NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITG 176 (380)
T ss_dssp TEEEEEEECCCTTCCCCEECT-TSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEE
T ss_pred CccceEEecCCCCEEEEEECC-CCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEE
Confidence 345678899999999999999 67889999999999999986432 34567899999999999996 4579999
Q ss_pred ECCCeEEEEECCCCeEEEEE-----cCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECC-CCeEEEEEecCCCCeEEEE
Q 003445 78 AASGTIKLWDLEEAKIVRTL-----TGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIR-KKGCIHTYKGHTRGVNAIR 150 (819)
Q Consensus 78 s~DG~I~IWDl~s~~~i~~l-----~~h~~~I~sl~fsp-~g~~Lasgs~Dg~I~IwDi~-t~~~i~~~~~h~~~I~sl~ 150 (819)
+.|++|++||+.+++.+..+ .+|...|.+++|++ ++++|++|+.||.|++||++ .+..+..+.+|...|.+++
T Consensus 177 s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~ 256 (380)
T 3iz6_a 177 SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVK 256 (380)
T ss_dssp CTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEE
T ss_pred CCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEE
Confidence 99999999999999998887 67999999999987 78899999999999999998 5577888999999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC-------CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 003445 151 FTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE-------GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA 223 (819)
Q Consensus 151 fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~-------~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~ 223 (819)
|+|++++|++|+.||.|++||+++++.+..+..+. ..|++++|+|+|.+|++|+.||.|++||+..++.+..+
T Consensus 257 ~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~ 336 (380)
T 3iz6_a 257 FFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL 336 (380)
T ss_dssp ECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred EecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE
Confidence 99999999999999999999999999988876543 24899999999999999999999999999999888776
Q ss_pred ----CCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCc
Q 003445 224 ----GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIR 259 (819)
Q Consensus 224 ----~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~ 259 (819)
..|...|.+++|+|+|++|++|+.| .|++|++...+
T Consensus 337 ~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 337 GTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 6788999999999999999999877 59999987643
No 65
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.9e-32 Score=306.47 Aligned_cols=279 Identities=16% Similarity=0.246 Sum_probs=229.3
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc-----------eEEEecCCC------------CCeEEEEEcCCC
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-----------AILSLSGHT------------SGIDSVSFDSSE 71 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~-----------~i~~l~~h~------------~~V~~l~fspdg 71 (819)
|.+.|+|++|+| ++.+|++|+.||.|+||++.++. ....+.+|. ..|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 27 EADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp GGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred ccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 478999999999 77899999999999999998776 577888998 889999999998
Q ss_pred --CEEEEEECCCeEEEEECCCCeEE---------------------------------------EE-EcCCCCCeEEEEE
Q 003445 72 --VLVAAGAASGTIKLWDLEEAKIV---------------------------------------RT-LTGHRSNCISVDF 109 (819)
Q Consensus 72 --~~Lasgs~DG~I~IWDl~s~~~i---------------------------------------~~-l~~h~~~I~sl~f 109 (819)
.+|++++.||.|++||+.+++.. .. ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999999765432 12 3679999999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCC-CeEEEE-------EecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeE---
Q 003445 110 HPFGEFFASGSLDTNLKIWDIRK-KGCIHT-------YKGHTRGVNAIRFTPDG-RWVVSGGEDNTVKLWDLTAGKL--- 177 (819)
Q Consensus 110 sp~g~~Lasgs~Dg~I~IwDi~t-~~~i~~-------~~~h~~~I~sl~fspdg-~~L~sgs~Dg~I~IwDl~t~~~--- 177 (819)
+|++++|++| .||.|++||+++ +..+.. +.+|...|.+++|+|++ ++|++|+.||.|++||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999998 799999999984 444442 45799999999999998 9999999999999999999886
Q ss_pred -EEEEecCCC------------CeEEEEEeCCCCEEEEEECCCeEEEEECCC-CeEEEEeCCCCCC--------------
Q 003445 178 -LHDFKCHEG------------QIQCIDFHPHEFLLATGSADRTVKFWDLET-FELIGSAGPETSG-------------- 229 (819)
Q Consensus 178 -i~~~~~h~~------------~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~-~~~l~~~~~~~~~-------------- 229 (819)
+..+..|.. .|.+++|+|++.+|++++. +.|++||+++ ++++..+..|...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 778887775 8999999999999999998 9999999997 8877777776431
Q ss_pred -eeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeec-------------------------------c-ccceeEeE
Q 003445 230 -VRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDV-------------------------------G-WSRLSDLN 275 (819)
Q Consensus 230 -I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~-------------------------------~-~s~i~~l~ 275 (819)
+..++|+|+|++|++|+.+ .|++||+.+.+....... . ...+..+.
T Consensus 344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 423 (447)
T 3dw8_B 344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTA 423 (447)
T ss_dssp CCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEE
T ss_pred cceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEE
Confidence 2349999999999999877 599999988766431100 1 12344555
Q ss_pred e-cCCCEEEEEEcCCeEEEEEec
Q 003445 276 V-HEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 276 ~-~dg~lLa~~~~Dg~V~IW~ld 297 (819)
+ +++.+|++++.++ +++|.-.
T Consensus 424 ~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 424 WHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp ECSSSSEEEEECSSC-EEEEECC
T ss_pred ECCCCCEEEEEecce-eeeeccc
Confidence 5 6788998887774 8888643
No 66
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.8e-33 Score=303.53 Aligned_cols=246 Identities=20% Similarity=0.291 Sum_probs=208.6
Q ss_pred EEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc--eEEEecCCCCCeEEEEEcC--CCCEEEEEECCCeEEEE
Q 003445 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN--AILSLSGHTSGIDSVSFDS--SEVLVAAGAASGTIKLW 86 (819)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~--~i~~l~~h~~~V~~l~fsp--dg~~Lasgs~DG~I~IW 86 (819)
.+.+|.+.|++++|+| ++++|++|+.|++|+|||+.++. .+..+.+|...|.+++|++ ++.+|++|+.|++|++|
T Consensus 8 ~~~~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp ------CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred ecccccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 4679999999999999 67789999999999999998764 4678899999999999986 48999999999999999
Q ss_pred ECCCC--eEEEEEcCCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCCeE---EEEEecCCCCeEEEEEcCC-----
Q 003445 87 DLEEA--KIVRTLTGHRSNCISVDFHPF--GEFFASGSLDTNLKIWDIRKKGC---IHTYKGHTRGVNAIRFTPD----- 154 (819)
Q Consensus 87 Dl~s~--~~i~~l~~h~~~I~sl~fsp~--g~~Lasgs~Dg~I~IwDi~t~~~---i~~~~~h~~~I~sl~fspd----- 154 (819)
|++++ +.+..+.+|...|.+++|+|+ +.+|++|+.||.|++||++.+.. ...+.+|...|.+++|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 99987 467788899999999999998 78999999999999999987632 3445678999999999997
Q ss_pred ------------CCEEEEEECCCeEEEEECCCC---eEEEEEecCCCCeEEEEEeCCC----CEEEEEECCCeEEEEECC
Q 003445 155 ------------GRWVVSGGEDNTVKLWDLTAG---KLLHDFKCHEGQIQCIDFHPHE----FLLATGSADRTVKFWDLE 215 (819)
Q Consensus 155 ------------g~~L~sgs~Dg~I~IwDl~t~---~~i~~~~~h~~~I~sl~fspdg----~~Lasgs~Dg~I~iwDl~ 215 (819)
+++|++|+.|+.|++||++.+ +.+..+.+|...|.+++|+|++ .+|++|+.||+|++||+.
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence 478999999999999999765 4677788999999999999986 899999999999999997
Q ss_pred CC---e-EEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecC
Q 003445 216 TF---E-LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP 257 (819)
Q Consensus 216 ~~---~-~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~ 257 (819)
+. . ....+..|...|.+++|+|+|++|++++.| .+++|+...
T Consensus 247 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 247 DASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp STTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 62 1 122334567899999999999999988776 699999763
No 67
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.6e-31 Score=298.01 Aligned_cols=276 Identities=24% Similarity=0.468 Sum_probs=242.9
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec--CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003445 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS--GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVR 95 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~--~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~ 95 (819)
-+++|+|++ + ++|++|. |++|+|||..+++....+. +|...|++|+|+|+|++|++|+.||.|++||+++++.+.
T Consensus 107 y~~~l~wS~-~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 107 YLNLVDWSS-G-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp TCBCEEECT-T-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred cceeEEECC-C-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 467899996 3 4777775 8999999999998877654 678899999999999999999999999999999999999
Q ss_pred EEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003445 96 TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA 174 (819)
Q Consensus 96 ~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~-~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t 174 (819)
.+.+|...+.++.|+ +.+|++|+.|+.+++||.... ..+..+.+|...+..+.|+|++.++++++.|+.|++||..+
T Consensus 184 ~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 184 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 999999999998886 689999999999999999864 56678899999999999999999999999999999999987
Q ss_pred Ce----EEEEEecCCCCeEEEEEeCCC-CEEEEE--ECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE-
Q 003445 175 GK----LLHDFKCHEGQIQCIDFHPHE-FLLATG--SADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL- 246 (819)
Q Consensus 175 ~~----~i~~~~~h~~~I~sl~fspdg-~~Lasg--s~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs- 246 (819)
++ .+.....|...|.+++|+|++ .+++++ +.|++|++||+.+++++..+..+ ..+.++.|+++++.+++++
T Consensus 262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg 340 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHG 340 (420)
T ss_dssp CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEEC
T ss_pred ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEe
Confidence 65 345667789999999999975 566554 47999999999999999888765 5689999999999998775
Q ss_pred --CCCEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCC
Q 003445 247 --HESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDIS 299 (819)
Q Consensus 247 --~d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~ 299 (819)
++.|+|||+.+.++...+..+...+..+.+ ++|++|++|+.|++|+||++...
T Consensus 341 ~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 341 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 346999999999999999888888988877 78999999999999999998653
No 68
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.4e-31 Score=297.02 Aligned_cols=281 Identities=25% Similarity=0.497 Sum_probs=253.5
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (819)
...+..+.+|.+.|++++|+ +.+|++|+.||.|++||+.+++.+..+.+|...|.++.|+ +.++++|+.||.|++
T Consensus 149 ~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~ 223 (445)
T 2ovr_B 149 GKCLRTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRV 223 (445)
T ss_dssp CCEEEECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEE
T ss_pred CcEEEEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEE
Confidence 34567888999999999997 3589999999999999999999999999999999999995 568999999999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003445 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (819)
Q Consensus 86 WDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg 165 (819)
||+.+++.+..+.+|...|.+++| ++.++++|+.||.|++||+++++++..+.+|...|.++.| ++.++++|+.||
T Consensus 224 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~ 299 (445)
T 2ovr_B 224 WDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDT 299 (445)
T ss_dssp EESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTS
T ss_pred EECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCC
Confidence 999999999999999999999999 6889999999999999999999999999999999999999 789999999999
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC---CCCCeeEEEEeCCCCEE
Q 003445 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP---ETSGVRCLTFNPDGRTL 242 (819)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~---~~~~I~sl~fspdg~~L 242 (819)
.|++||+++++.+..+.+|...+.++.++ +.+|++|+.||.|++||+++++.+..+.. |...|.+++|+ +.+|
T Consensus 300 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 375 (445)
T 2ovr_B 300 SIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFV 375 (445)
T ss_dssp CEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEE
T ss_pred eEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEE
Confidence 99999999999999999999999988875 66999999999999999999999988876 78899999995 5789
Q ss_pred EEEECC-CEEEEEecCCceeeee-----eccccceeEeEe-cCCCEEEEEEcCCe----EEEEEecCC
Q 003445 243 LCGLHE-SLKVFSWEPIRCHDAV-----DVGWSRLSDLNV-HEGKLLGCSYNQSC----VGVWVVDIS 299 (819)
Q Consensus 243 asgs~d-~I~Vwd~~~~~~~~~~-----~~~~s~i~~l~~-~dg~lLa~~~~Dg~----V~IW~ld~~ 299 (819)
++|+.+ .|++|++.+++....+ ..+...+..+.+ +++.++++|+.||. |.|||++..
T Consensus 376 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 376 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 988876 5999999998887766 344566777766 67788899999997 999998753
No 69
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.1e-31 Score=307.99 Aligned_cols=290 Identities=14% Similarity=0.230 Sum_probs=252.3
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCC---CeEEEEEcCC-CCEEEEEECCCe
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTS---GIDSVSFDSS-EVLVAAGAASGT 82 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~---~V~~l~fspd-g~~Lasgs~DG~ 82 (819)
..+..+.+|...|++++|+|++..+|++++.||.|++||+.+++.+..+.+|.. .|.+++|+|+ +++|++++.||.
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 230 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK 230 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC
T ss_pred CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe
Confidence 356778899999999999996666899999999999999999999999999999 9999999999 999999999999
Q ss_pred EEEEECCCCeEEEEE-c---CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecC----CCCeEEEEEcCC
Q 003445 83 IKLWDLEEAKIVRTL-T---GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH----TRGVNAIRFTPD 154 (819)
Q Consensus 83 I~IWDl~s~~~i~~l-~---~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h----~~~I~sl~fspd 154 (819)
|++||+.+++.+..+ . .|...|.+++|+ ++.+|++++.||.|++||+++++.+..+..+ ...+.++.|. +
T Consensus 231 i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 308 (615)
T 1pgu_A 231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-G 308 (615)
T ss_dssp EEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-E
T ss_pred EEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-C
Confidence 999999999999998 6 899999999999 9999999999999999999999999998876 3678888886 8
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCC--------------------------------------
Q 003445 155 GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPH-------------------------------------- 196 (819)
Q Consensus 155 g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspd-------------------------------------- 196 (819)
+.++++++.||.|++||+.+++.+..+.+|...|.+++| |+
T Consensus 309 ~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~ 387 (615)
T 1pgu_A 309 NGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYS 387 (615)
T ss_dssp TTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCE
T ss_pred CCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEE
Confidence 999999999999999999988888777766655555554 32
Q ss_pred --------------------------------------------------------------------CCEEEEEEC-CC
Q 003445 197 --------------------------------------------------------------------EFLLATGSA-DR 207 (819)
Q Consensus 197 --------------------------------------------------------------------g~~Lasgs~-Dg 207 (819)
+.+|++++. ||
T Consensus 388 ~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~ 467 (615)
T 1pgu_A 388 SISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN 467 (615)
T ss_dssp EEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTS
T ss_pred EEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCC
Confidence 445555665 66
Q ss_pred eEEEEECCCCeEE-EEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeec-cccceeEeEe-c------
Q 003445 208 TVKFWDLETFELI-GSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDV-GWSRLSDLNV-H------ 277 (819)
Q Consensus 208 ~I~iwDl~~~~~l-~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~-~~s~i~~l~~-~------ 277 (819)
.|++||+.+++.. ..+..|...|.+++|+|+|++|++++.+ .+++|++.+.+....+.. +...+..+.+ +
T Consensus 468 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~ 547 (615)
T 1pgu_A 468 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGAN 547 (615)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC----
T ss_pred eEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccc
Confidence 7777777665554 5567788999999999999999999876 699999999988887766 7777888777 5
Q ss_pred ----CCCEEEEEEcCCeEEEEEecCC
Q 003445 278 ----EGKLLGCSYNQSCVGVWVVDIS 299 (819)
Q Consensus 278 ----dg~lLa~~~~Dg~V~IW~ld~~ 299 (819)
++++|++++.|+.|++|+++.+
T Consensus 548 ~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 548 EEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp --CCSCCEEEEEETTSCEEEEESSCT
T ss_pred ccccCCCEEEEEcCCCcEEEEECCCC
Confidence 7999999999999999999886
No 70
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1e-31 Score=297.20 Aligned_cols=250 Identities=16% Similarity=0.287 Sum_probs=226.8
Q ss_pred eEEEEeccCCCEEEEEEeeC---CC---cEEEEEeCCCeEEEEECCCCce-----EEEecCC-----CCCeEEEEEc---
Q 003445 8 KLQEFVAHSSTVNCLKIGRK---SS---RVLVTGGEDHKVNLWAIGKPNA-----ILSLSGH-----TSGIDSVSFD--- 68 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~---~~---~~Latgs~Dg~V~IWdl~~~~~-----i~~l~~h-----~~~V~~l~fs--- 68 (819)
.+..+.+|...|++++|+|+ ++ .+|++++.||.|++|++.+++. +..+..| ...|.+++|+
T Consensus 54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 133 (397)
T 1sq9_A 54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 133 (397)
T ss_dssp GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence 57788899999999999994 27 8999999999999999988887 8888888 5899999999
Q ss_pred -CCCCE-EEEEECCCeEEEEECCC------CeEEE-----EE-------cCCCCCeEEEEEecCCCEEEEEECCCcEEEE
Q 003445 69 -SSEVL-VAAGAASGTIKLWDLEE------AKIVR-----TL-------TGHRSNCISVDFHPFGEFFASGSLDTNLKIW 128 (819)
Q Consensus 69 -pdg~~-Lasgs~DG~I~IWDl~s------~~~i~-----~l-------~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~Iw 128 (819)
|++.+ |++++.||.|++||+.+ ++.+. .+ ..|...|.+++|+|++ +|++++.||.|++|
T Consensus 134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~ 212 (397)
T 1sq9_A 134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQIS 212 (397)
T ss_dssp ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEE
T ss_pred CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEE
Confidence 99999 99999999999999988 65554 66 4588999999999999 99999999999999
Q ss_pred ECCCCeEEEEEec---C---CCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEec-------------CCC
Q 003445 129 DIRKKGCIHTYKG---H---TRGVNAIRFTPDGRWVVSGGED---NTVKLWDLTAGKLLHDFKC-------------HEG 186 (819)
Q Consensus 129 Di~t~~~i~~~~~---h---~~~I~sl~fspdg~~L~sgs~D---g~I~IwDl~t~~~i~~~~~-------------h~~ 186 (819)
|+++++.+..+.. | ...|.+++|+|++++|++++.| |.|++||+++++.+..+.. |..
T Consensus 213 d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (397)
T 1sq9_A 213 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS 292 (397)
T ss_dssp ETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS
T ss_pred ECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC
Confidence 9999999999998 8 9999999999999999999999 9999999999999999998 999
Q ss_pred CeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeC------CC---------------CCCeeEEEEeCCC------
Q 003445 187 QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG------PE---------------TSGVRCLTFNPDG------ 239 (819)
Q Consensus 187 ~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~------~~---------------~~~I~sl~fspdg------ 239 (819)
.|.+++|+|++.+|++++.||.|++||+.+++.+..+. .| ...|.+++|+|+|
T Consensus 293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~ 372 (397)
T 1sq9_A 293 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG 372 (397)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTT
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccc
Confidence 99999999999999999999999999999999999988 77 8999999999998
Q ss_pred ----CEEEEEECC-CEEEEEecCC
Q 003445 240 ----RTLLCGLHE-SLKVFSWEPI 258 (819)
Q Consensus 240 ----~~Lasgs~d-~I~Vwd~~~~ 258 (819)
++|++++.+ .|++|+++++
T Consensus 373 ~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 373 ADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccceEEEecCCCcEEEEEcCCC
Confidence 789988866 5999998765
No 71
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.8e-31 Score=284.96 Aligned_cols=247 Identities=21% Similarity=0.308 Sum_probs=211.1
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--CeEEEEEcCCCCCeEEEEEec--CCCEEEEEECCCcEEEE
Q 003445 53 LSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE--AKIVRTLTGHRSNCISVDFHP--FGEFFASGSLDTNLKIW 128 (819)
Q Consensus 53 ~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s--~~~i~~l~~h~~~I~sl~fsp--~g~~Lasgs~Dg~I~Iw 128 (819)
..+.+|...|.+++|+|++++|++|+.||+|++||+.. .+.+..+.+|...|.+++|++ ++++|++|+.||+|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45778999999999999999999999999999999974 467889999999999999986 38999999999999999
Q ss_pred ECCCCe--EEEEEecCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCe--EEEEEecCCCCeEEEEEeCC------
Q 003445 129 DIRKKG--CIHTYKGHTRGVNAIRFTPD--GRWVVSGGEDNTVKLWDLTAGK--LLHDFKCHEGQIQCIDFHPH------ 196 (819)
Q Consensus 129 Di~t~~--~i~~~~~h~~~I~sl~fspd--g~~L~sgs~Dg~I~IwDl~t~~--~i~~~~~h~~~I~sl~fspd------ 196 (819)
|+++++ .+..+..|...|.+++|+|+ |.+|++++.||.|++||++++. ....+.+|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998774 56677889999999999997 8999999999999999998763 24567789999999999997
Q ss_pred -------CCEEEEEECCCeEEEEECCCCe----EEEEeCCCCCCeeEEEEeCCC---CEEEEEECC-CEEEEEecCCce-
Q 003445 197 -------EFLLATGSADRTVKFWDLETFE----LIGSAGPETSGVRCLTFNPDG---RTLLCGLHE-SLKVFSWEPIRC- 260 (819)
Q Consensus 197 -------g~~Lasgs~Dg~I~iwDl~~~~----~l~~~~~~~~~I~sl~fspdg---~~Lasgs~d-~I~Vwd~~~~~~- 260 (819)
+.+|++|+.|++|++||+++++ ....+.+|...|.+++|+|++ .+|++++.| .+++|+++....
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 5799999999999999998765 667789999999999999985 889988876 699999987431
Q ss_pred --eeee--eccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCC
Q 003445 261 --HDAV--DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDIS 299 (819)
Q Consensus 261 --~~~~--~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~ 299 (819)
...+ ......+..+.+ +++++|++++.|+.|+||+....
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence 1122 223345566655 78999999999999999998643
No 72
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.1e-30 Score=316.82 Aligned_cols=294 Identities=21% Similarity=0.385 Sum_probs=259.1
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (819)
...+..+.+|.+.|++++|+| ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.||.|++
T Consensus 45 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 123 (814)
T 3mkq_A 45 QVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123 (814)
T ss_dssp TEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred CceEEEEecCCCcEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEE
Confidence 446678899999999999999 6778999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCC-eEEEEEcCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeEEEEEecCC-CCeEEEEEcC--CCCEEEE
Q 003445 86 WDLEEA-KIVRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT-RGVNAIRFTP--DGRWVVS 160 (819)
Q Consensus 86 WDl~s~-~~i~~l~~h~~~I~sl~fsp-~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~-~~I~sl~fsp--dg~~L~s 160 (819)
||+.++ .....+.+|...|.+++|+| ++.+|++++.||.|++||+.++.....+..+. ..+.+++|+| ++.+|++
T Consensus 124 w~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 203 (814)
T 3mkq_A 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203 (814)
T ss_dssp EEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEE
T ss_pred EECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEE
Confidence 999987 77788899999999999999 88899999999999999999888777776655 8899999999 9999999
Q ss_pred EECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCC
Q 003445 161 GGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR 240 (819)
Q Consensus 161 gs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~ 240 (819)
++.||.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.||.|++||+.+++.+..+..+...+.+++|+|+|.
T Consensus 204 ~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 283 (814)
T 3mkq_A 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283 (814)
T ss_dssp ECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCG
T ss_pred EeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred --EEEEEECCCEEEEEecCCceeeee-------------------------------------------eccccceeEeE
Q 003445 241 --TLLCGLHESLKVFSWEPIRCHDAV-------------------------------------------DVGWSRLSDLN 275 (819)
Q Consensus 241 --~Lasgs~d~I~Vwd~~~~~~~~~~-------------------------------------------~~~~s~i~~l~ 275 (819)
+++++.++++.+|++........+ ......+..+.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (814)
T 3mkq_A 284 KNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLA 363 (814)
T ss_dssp GGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEE
T ss_pred ceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeE
Confidence 688888889999987643221111 00111233444
Q ss_pred e-cCCCEEEEEEcCCeEEEEEecCCce
Q 003445 276 V-HEGKLLGCSYNQSCVGVWVVDISRI 301 (819)
Q Consensus 276 ~-~dg~lLa~~~~Dg~V~IW~ld~~~~ 301 (819)
+ ++|+++++++ ++.+.+|++.....
T Consensus 364 ~spdg~~la~~~-~~~~~i~~~~~~~~ 389 (814)
T 3mkq_A 364 HSPNGRFVTVVG-DGEYVIYTALAWRN 389 (814)
T ss_dssp ECTTSSEEEEEE-TTEEEEEETTTTEE
T ss_pred ECCCCCEEEEec-CCEEEEEECccccc
Confidence 4 7889999888 89999999765443
No 73
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.3e-31 Score=333.17 Aligned_cols=301 Identities=24% Similarity=0.409 Sum_probs=263.3
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcC--CCCEEEEEECCCeE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDS--SEVLVAAGAASGTI 83 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fsp--dg~~Lasgs~DG~I 83 (819)
...+..+.+|.+.|.+++|+| ++.+|++|+.||.|+|||+.+++.+..+.+|...|.+++|++ ++.++++|+.||.|
T Consensus 647 ~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v 725 (1249)
T 3sfz_A 647 GEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725 (1249)
T ss_dssp CCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCE
T ss_pred CCEEEEeccCCCCEEEEEEec-CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeE
Confidence 446778999999999999999 678999999999999999999999999999999999999999 55699999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe-----------------------
Q 003445 84 KLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK----------------------- 140 (819)
Q Consensus 84 ~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~----------------------- 140 (819)
++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||++++.....+.
T Consensus 726 ~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 805 (1249)
T 3sfz_A 726 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS 805 (1249)
T ss_dssp EEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC
T ss_pred EEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEE
Confidence 999999999999999999999999999999999999999999999998765443321
Q ss_pred --------------------------------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCe
Q 003445 141 --------------------------------GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQI 188 (819)
Q Consensus 141 --------------------------------~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I 188 (819)
+|...|.+++|+|++.++++++.||.|++||+.++..+..+.+|...|
T Consensus 806 ~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v 885 (1249)
T 3sfz_A 806 WSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWV 885 (1249)
T ss_dssp BCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCE
T ss_pred ECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccce
Confidence 577889999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEECC-----------------------------------------------------
Q 003445 189 QCIDFHPHEFLLATGSADRTVKFWDLE----------------------------------------------------- 215 (819)
Q Consensus 189 ~sl~fspdg~~Lasgs~Dg~I~iwDl~----------------------------------------------------- 215 (819)
.+++|+|++.+|++++.||.|++||+.
T Consensus 886 ~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 965 (1249)
T 3sfz_A 886 HGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVS 965 (1249)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEE
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEE
Confidence 999999999999999999988888743
Q ss_pred --------------------------CCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeeccc
Q 003445 216 --------------------------TFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGW 268 (819)
Q Consensus 216 --------------------------~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~ 268 (819)
+++.+..+..|...|.+++|+|+|++|++++.+ .+++|++.+.++.... .+.
T Consensus 966 ~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~ 1044 (1249)
T 3sfz_A 966 CCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ-AHQ 1044 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCB-CCS
T ss_pred EEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEe-cCC
Confidence 233344456788899999999999999998776 5999999988776443 455
Q ss_pred cceeEeEecCCCEEEEEEcCCeEEEEEecCCceeeeeecc
Q 003445 269 SRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGS 308 (819)
Q Consensus 269 s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~p~~~~~ 308 (819)
..+..+.+..+..+++++.|+.|++|++..++......++
T Consensus 1045 ~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 1084 (1249)
T 3sfz_A 1045 ETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCH 1084 (1249)
T ss_dssp SCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECC
T ss_pred CcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEccc
Confidence 6677777777778899999999999999988866544433
No 74
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6.8e-32 Score=301.39 Aligned_cols=287 Identities=18% Similarity=0.325 Sum_probs=240.8
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC----ceEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----NAILSLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEEA 91 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~----~~i~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~s~ 91 (819)
....+++++|+...++++|+.||.|+||++.+. ..+..+.+|.+.|.+++|+| ++.+|++|+.||.|++||+.++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 345568888865556667899999999999654 23456778999999999999 9999999999999999999987
Q ss_pred -------eEEEEEcCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeEEEEE--ecCCCCeEEEEEcCCCCEEEEE
Q 003445 92 -------KIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTY--KGHTRGVNAIRFTPDGRWVVSG 161 (819)
Q Consensus 92 -------~~i~~l~~h~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~t~~~i~~~--~~h~~~I~sl~fspdg~~L~sg 161 (819)
+.+..+.+|...|.+++|+|++ .+|++++.||.|++||+++++.+..+ ..|...|.+++|+|++++|+++
T Consensus 115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 194 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194 (402)
T ss_dssp CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEE
T ss_pred CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEE
Confidence 6678899999999999999998 69999999999999999999999999 7899999999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEE-ecCCCC-eEEEEEeCCCCEEEEE---ECCCeEEEEECCCCeE-EEE-eCCCCCCeeEEE
Q 003445 162 GEDNTVKLWDLTAGKLLHDF-KCHEGQ-IQCIDFHPHEFLLATG---SADRTVKFWDLETFEL-IGS-AGPETSGVRCLT 234 (819)
Q Consensus 162 s~Dg~I~IwDl~t~~~i~~~-~~h~~~-I~sl~fspdg~~Lasg---s~Dg~I~iwDl~~~~~-l~~-~~~~~~~I~sl~ 234 (819)
+.||.|++||+++++.+..+ ..|.+. +.++.|+|++.+|++| +.|+.|++||+++++. +.. ...+...+.+++
T Consensus 195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 274 (402)
T 2aq5_A 195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF 274 (402)
T ss_dssp ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEE
T ss_pred ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEE
Confidence 99999999999999999998 678765 8999999999999999 7899999999988654 222 234667899999
Q ss_pred EeCCCCEEEE-EE-CCCEEEEEecCCce-eeeeec--cccceeEeEe-cCCCEEEEEEcCCeEEEEEecCCceeeee
Q 003445 235 FNPDGRTLLC-GL-HESLKVFSWEPIRC-HDAVDV--GWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYT 305 (819)
Q Consensus 235 fspdg~~Las-gs-~d~I~Vwd~~~~~~-~~~~~~--~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~~~p~~ 305 (819)
|+|++++|++ |+ ++.|++|++...+. ...+.. +...+..+.+ +++.++++ .++.+++|++..+.++|+.
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~~i~ 349 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCEPIA 349 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEEEEE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcEEEEE
Confidence 9999999975 43 44699999998773 333322 2355666666 56666654 5679999999998887654
No 75
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-33 Score=322.20 Aligned_cols=287 Identities=16% Similarity=0.143 Sum_probs=228.2
Q ss_pred EEEeccCCCEEEEEEeeC-----CCcEEEEEeCCCeEEEEECCCCce-----------EEEecCCCCCeEEEEEcCCCCE
Q 003445 10 QEFVAHSSTVNCLKIGRK-----SSRVLVTGGEDHKVNLWAIGKPNA-----------ILSLSGHTSGIDSVSFDSSEVL 73 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~-----~~~~Latgs~Dg~V~IWdl~~~~~-----------i~~l~~h~~~V~~l~fspdg~~ 73 (819)
..+.+|.+.|++++|+|+ ++.+||+|+.||+|+|||+..+.. ...+.+|...|.+++|++++ .
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~ 279 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-T 279 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-E
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-e
Confidence 346778899999999995 257999999999999999976532 34678899999999999864 8
Q ss_pred EEEEECCCeEEEEECCCC-eEEEEEcCCCCCeEEE--EEecCC-CEEEEEECCCcEEEEECCCCeEEEEEecCCC--CeE
Q 003445 74 VAAGAASGTIKLWDLEEA-KIVRTLTGHRSNCISV--DFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTYKGHTR--GVN 147 (819)
Q Consensus 74 Lasgs~DG~I~IWDl~s~-~~i~~l~~h~~~I~sl--~fsp~g-~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~--~I~ 147 (819)
|++|+.||+|++||+.++ .+...+.+|...|.+| +|+|++ .+|++|+.|++|+|||+++++++..+.+|.. .|.
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~ 359 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLV 359 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCC
T ss_pred EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCccc
Confidence 999999999999999876 3456688999999999 578887 8999999999999999999887777776653 588
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC--
Q 003445 148 AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP-- 225 (819)
Q Consensus 148 sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~-- 225 (819)
+++|+|++..|++++.|+.|++||++++.++..+.+|.+.|++++|+|+|.+|++|+.||+|++||+... .+.....
T Consensus 360 ~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~ 438 (524)
T 2j04_B 360 PVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSS 438 (524)
T ss_dssp CEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC----
T ss_pred ceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCc
Confidence 9999999999999999999999999999988888899999999999999999999999999999998653 2111111
Q ss_pred ---CCCCeeEEEEeCCCCEEEEEECCCEEEEEec-CCceeeeeeccccceeEeEe-cC---CCEEEEEEcCCeEEEEEec
Q 003445 226 ---ETSGVRCLTFNPDGRTLLCGLHESLKVFSWE-PIRCHDAVDVGWSRLSDLNV-HE---GKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 226 ---~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~-~~~~~~~~~~~~s~i~~l~~-~d---g~lLa~~~~Dg~V~IW~ld 297 (819)
+...+.+++|+|+|..+. ..+...+|.|. ++.+...+..+...+..+.+ ++ +.++++|+.+|.|+||+++
T Consensus 439 ~~~~~~~v~~v~~sp~g~~~~--~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 439 ATQKSLRLWKWDYSIKDDKYR--IDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp --CCCCEEEECBCCSSSCEEE--ECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred cceeeeEEEEeccCCCCCeEE--ccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 112467999999999553 34455667665 45566666666677777777 44 4599999999999999988
Q ss_pred CCc
Q 003445 298 ISR 300 (819)
Q Consensus 298 ~~~ 300 (819)
...
T Consensus 517 ~~~ 519 (524)
T 2j04_B 517 LEH 519 (524)
T ss_dssp CC-
T ss_pred ccc
Confidence 653
No 76
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.1e-31 Score=291.69 Aligned_cols=240 Identities=20% Similarity=0.362 Sum_probs=216.7
Q ss_pred cCCCEEEEEEeeCC---CcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC
Q 003445 15 HSSTVNCLKIGRKS---SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEE 90 (819)
Q Consensus 15 H~~~V~~lafsp~~---~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~s 90 (819)
|...|++++|+|++ +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++|+.||.|++||+.+
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 66889999999953 56999999999999999999999999999999999999999 999999999999999999999
Q ss_pred CeEEEEE---cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE----------------------------
Q 003445 91 AKIVRTL---TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY---------------------------- 139 (819)
Q Consensus 91 ~~~i~~l---~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~---------------------------- 139 (819)
++.+..+ .+|...|.+++|+|++++|++++.||.|++||+++++.+..+
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 3k26_A 148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227 (366)
T ss_dssp TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence 9999988 689999999999999999999999999999999876544333
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--------------EEEEEecCCCCeEEEEEeCC--CCEEEEE
Q 003445 140 KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK--------------LLHDFKCHEGQIQCIDFHPH--EFLLATG 203 (819)
Q Consensus 140 ~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~--------------~i~~~~~h~~~I~sl~fspd--g~~Lasg 203 (819)
..|...|.+++|+ +++|++++.||.|++||+.++. .+..+..|...|++++|+|+ +.+|++|
T Consensus 228 ~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~ 305 (366)
T 3k26_A 228 DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALG 305 (366)
T ss_dssp SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEE
T ss_pred cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEE
Confidence 3389999999999 7799999999999999998764 47788889999999999999 9999999
Q ss_pred ECCCeEEEEECCCCe----EEEEeCCC--CCCeeEEEEeCCCCEEEEEECC-CEEEEEec
Q 003445 204 SADRTVKFWDLETFE----LIGSAGPE--TSGVRCLTFNPDGRTLLCGLHE-SLKVFSWE 256 (819)
Q Consensus 204 s~Dg~I~iwDl~~~~----~l~~~~~~--~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~ 256 (819)
+.||.|++||+.+++ ....+..| ...|.+++|+|++++|++++.+ .|++|++.
T Consensus 306 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 306 NQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 999999999999875 44567776 7899999999999999999877 59999975
No 77
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.3e-30 Score=274.46 Aligned_cols=274 Identities=23% Similarity=0.461 Sum_probs=237.1
Q ss_pred EEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec--CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003445 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS--GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96 (819)
Q Consensus 19 V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~--~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~ 96 (819)
+++|+|++ ++ +|++|. |++|+|||+.+++.+..+. +|...|.+++|+|++++|++|+.||+|++||+++++.+..
T Consensus 28 ~~~l~WS~-~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~ 104 (318)
T 4ggc_A 28 LNLVDWSS-GN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 104 (318)
T ss_dssp CBCEEECT-TS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ceEEEECC-CC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence 57899997 33 677764 8999999999999887665 6788899999999999999999999999999999999999
Q ss_pred EcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 003445 97 LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG 175 (819)
Q Consensus 97 l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~-~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~ 175 (819)
+.+|...+.++.+. +.++++++.++.+++|+.... ..+..+.+|...+..+.|.+++++|++++.||.|++||++++
T Consensus 105 ~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 182 (318)
T 4ggc_A 105 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 182 (318)
T ss_dssp EECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred ecCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence 99999988776654 689999999999999998865 456778899999999999999999999999999999999876
Q ss_pred eE----EEEEecCCCCeEEEEEeCCCC-E--EEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE--
Q 003445 176 KL----LHDFKCHEGQIQCIDFHPHEF-L--LATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL-- 246 (819)
Q Consensus 176 ~~----i~~~~~h~~~I~sl~fspdg~-~--Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs-- 246 (819)
+. ......+.+.|.++.++|++. . +++++.++.|++||........... +...+..+.|++++..+++++
T Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~ 261 (318)
T 4ggc_A 183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGF 261 (318)
T ss_dssp TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECT
T ss_pred cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEc
Confidence 52 344556788999999999754 3 3456778999999999888776554 557799999999999988765
Q ss_pred -CCCEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEecC
Q 003445 247 -HESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 247 -~d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~ 298 (819)
++.|++||+.+.++...+..+...+..+.+ +++++|++|+.|++|+||++..
T Consensus 262 ~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 262 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 346999999999999999888888988887 6899999999999999999854
No 78
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.4e-31 Score=286.88 Aligned_cols=289 Identities=15% Similarity=0.197 Sum_probs=243.8
Q ss_pred cccceEEEEeccCCCEEEEEEeeCC--CcEEEEEeCCCeEEEEECCC-CceE-EEecCCCCCeEEEEEcCCCCEEEEEEC
Q 003445 4 KRAYKLQEFVAHSSTVNCLKIGRKS--SRVLVTGGEDHKVNLWAIGK-PNAI-LSLSGHTSGIDSVSFDSSEVLVAAGAA 79 (819)
Q Consensus 4 kr~~kl~~~~~H~~~V~~lafsp~~--~~~Latgs~Dg~V~IWdl~~-~~~i-~~l~~h~~~V~~l~fspdg~~Lasgs~ 79 (819)
.....+..+.+|.+.|+|++|+|++ +.+|++|+.||.|+|||+.+ +..+ ..+.+|...|.+++|+|++++|++++.
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 3455677888999999999999965 78999999999999999986 5554 778899999999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCeEEEEE--ecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 003445 80 SGTIKLWDLEEAKIVRTLTGHRSNCISVDF--HPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRW 157 (819)
Q Consensus 80 DG~I~IWDl~s~~~i~~l~~h~~~I~sl~f--sp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~ 157 (819)
||.|++||+.+++.+. +.+|...|.+++| ++++.+|++++.||.|++||+++++.+..+..+. .+.++.+. +..
T Consensus 107 dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~ 182 (368)
T 3mmy_A 107 DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPM 182 (368)
T ss_dssp TSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTE
T ss_pred CCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCe
Confidence 9999999999998776 4569999999999 8899999999999999999999999998888665 56777776 458
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEeCCCCE----EEEEECCCeEEEEECCCC---eEEEEeCCCCC
Q 003445 158 VVSGGEDNTVKLWDLTAGKLLHDFK--CHEGQIQCIDFHPHEFL----LATGSADRTVKFWDLETF---ELIGSAGPETS 228 (819)
Q Consensus 158 L~sgs~Dg~I~IwDl~t~~~i~~~~--~h~~~I~sl~fspdg~~----Lasgs~Dg~I~iwDl~~~---~~l~~~~~~~~ 228 (819)
+++++.++.+.+||++......... .+...+.++.+.++... +++++.||.|++||+... ..+..+..|..
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 262 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS 262 (368)
T ss_dssp EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE
T ss_pred eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec
Confidence 8999999999999998765443332 23456677777766544 999999999999999987 44556666654
Q ss_pred ------------CeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEE
Q 003445 229 ------------GVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVW 294 (819)
Q Consensus 229 ------------~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW 294 (819)
.|.+++|+|++++|++++.+ .|++||+.+.++...+..+...+..+.+ +++++|++++.|+..+.|
T Consensus 263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence 79999999999999999876 5999999999998888887888888877 789999999998765555
Q ss_pred Ee
Q 003445 295 VV 296 (819)
Q Consensus 295 ~l 296 (819)
++
T Consensus 343 ~~ 344 (368)
T 3mmy_A 343 EF 344 (368)
T ss_dssp GG
T ss_pred cc
Confidence 43
No 79
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-30 Score=287.81 Aligned_cols=239 Identities=21% Similarity=0.319 Sum_probs=221.4
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIV 94 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i 94 (819)
|.+.|++++|+| ++.+|++|+.||.|++|| .+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++.+
T Consensus 107 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 107 TTNQVTCLAWSH-DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp -CBCEEEEEECT-TSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred CCCceEEEEEcC-CCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence 788999999999 778999999999999999 678889999999999999999999999999999999999999877655
Q ss_pred EE--------------------------------------------------------EcCCCCCeEEEEEecCCCEEEE
Q 003445 95 RT--------------------------------------------------------LTGHRSNCISVDFHPFGEFFAS 118 (819)
Q Consensus 95 ~~--------------------------------------------------------l~~h~~~I~sl~fsp~g~~Las 118 (819)
.. +..|...|.+++|+|++++|++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE
Confidence 43 3357778999999999999999
Q ss_pred EECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCC
Q 003445 119 GSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF 198 (819)
Q Consensus 119 gs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~ 198 (819)
++.||.|++||+++++.+..+..|...|.+++|+|++ ++++++.||.|++||+++++.+..+..|...|.+++|+|++.
T Consensus 265 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~ 343 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQ 343 (425)
T ss_dssp EETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSS
T ss_pred EcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCC
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCeEEEEECCCCe--------------------EEEEeCCCCC--CeeEEEEeCCCCEEEEEECC-CEEEEEe
Q 003445 199 LLATGSADRTVKFWDLETFE--------------------LIGSAGPETS--GVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (819)
Q Consensus 199 ~Lasgs~Dg~I~iwDl~~~~--------------------~l~~~~~~~~--~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (819)
+|++++.||.|++||+.+++ .+..+..|.. .|.+++|+|++++|++++.+ .+++|++
T Consensus 344 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 344 KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 99999999999999999888 8888988866 99999999999999988777 5999997
Q ss_pred c
Q 003445 256 E 256 (819)
Q Consensus 256 ~ 256 (819)
+
T Consensus 424 ~ 424 (425)
T 1r5m_A 424 P 424 (425)
T ss_dssp C
T ss_pred c
Confidence 5
No 80
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-30 Score=279.16 Aligned_cols=252 Identities=15% Similarity=0.342 Sum_probs=231.0
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC-----
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS----- 80 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D----- 80 (819)
...+..+.+|...|++++|+| ++++|++++.||.|++||+.+++.+..+. |...|.+++|+|++.+|++++.+
T Consensus 64 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 141 (369)
T 3zwl_B 64 GERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNP 141 (369)
T ss_dssp CCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBC
T ss_pred chhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCC
Confidence 345678899999999999999 67889999999999999999999999888 88999999999999999999999
Q ss_pred CeEEEEECCCCe-----------EEEEEcCCCC--CeEEEEEecCCCEEEEEECCCcEEEEECCC-CeEEEEEecCCCCe
Q 003445 81 GTIKLWDLEEAK-----------IVRTLTGHRS--NCISVDFHPFGEFFASGSLDTNLKIWDIRK-KGCIHTYKGHTRGV 146 (819)
Q Consensus 81 G~I~IWDl~s~~-----------~i~~l~~h~~--~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t-~~~i~~~~~h~~~I 146 (819)
|.|.+||+..+. .+..+..|.. .+.+++|+|++++|++++.||.|++||+++ +..+..+..|...|
T Consensus 142 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 221 (369)
T 3zwl_B 142 GSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSI 221 (369)
T ss_dssp CEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCE
T ss_pred CEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCce
Confidence 999999987542 3344556666 899999999999999999999999999998 78889999999999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC--------------eEEEE
Q 003445 147 NAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR--------------TVKFW 212 (819)
Q Consensus 147 ~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg--------------~I~iw 212 (819)
.+++|+|++++|++++.||.|++||+++++.+..+. +...+.+++|+|++.++++++.++ .+++|
T Consensus 222 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 300 (369)
T 3zwl_B 222 SDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFY 300 (369)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEE
T ss_pred eEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEE
Confidence 999999999999999999999999999999998888 788899999999999999999988 89999
Q ss_pred ECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCce
Q 003445 213 DLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRC 260 (819)
Q Consensus 213 Dl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~ 260 (819)
|+.+++.+..+..|...|.+++|+|+|++|++++.+ .|++|+++....
T Consensus 301 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 301 HKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred ecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 999999999999999999999999999999999876 599999986543
No 81
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.2e-30 Score=289.44 Aligned_cols=278 Identities=10% Similarity=0.162 Sum_probs=223.6
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCC-------eEEEEECCCCce----------EEEecCCCCCeEEEEEcCCCCEEEEEE
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDH-------KVNLWAIGKPNA----------ILSLSGHTSGIDSVSFDSSEVLVAAGA 78 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg-------~V~IWdl~~~~~----------i~~l~~h~~~V~~l~fspdg~~Lasgs 78 (819)
..+|+|++|+| ++++|++|+.+. .|++|++..... ...+.+|...|.+++++ +..+++|+
T Consensus 14 g~PV~sv~fs~-dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~ 90 (365)
T 4h5i_A 14 GYPAYGAKFLN-NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGC 90 (365)
T ss_dssp SSCEEEEEEEE-TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEEC
T ss_pred CCCEEEEEEeC-CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEE
Confidence 46899999999 778999987543 599999865432 23466888899888775 45666654
Q ss_pred -----------CCCeEEEEECCCCe----EEEEEc-----CCCCCeEEEEEecCCCEEEEEE--CCCcEEEEECCCCeEE
Q 003445 79 -----------ASGTIKLWDLEEAK----IVRTLT-----GHRSNCISVDFHPFGEFFASGS--LDTNLKIWDIRKKGCI 136 (819)
Q Consensus 79 -----------~DG~I~IWDl~s~~----~i~~l~-----~h~~~I~sl~fsp~g~~Lasgs--~Dg~I~IwDi~t~~~i 136 (819)
.|+.+++|++.... .+.... .+...+.+++|+|||+++++++ .|++|+|||+.+++++
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~ 170 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK 170 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE
Confidence 46789999986542 122221 2445688999999999977654 6899999999999999
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE--EecCCCCeEEEEEeCCCCEEEEEECCC----eEE
Q 003445 137 HTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHD--FKCHEGQIQCIDFHPHEFLLATGSADR----TVK 210 (819)
Q Consensus 137 ~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~--~~~h~~~I~sl~fspdg~~Lasgs~Dg----~I~ 210 (819)
..+. |...|.+++|+|||++|++++.+ .+.+|+..+++.+.. ...|...|.+++|+|++.++++++.|+ .++
T Consensus 171 ~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~ 248 (365)
T 4h5i_A 171 FEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLT 248 (365)
T ss_dssp EEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEE
T ss_pred EEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEe
Confidence 8887 77889999999999999998754 566777777766543 345778899999999999999999887 688
Q ss_pred EEECCCCeE----EEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeee-eccccceeEeEe-cCCCEEE
Q 003445 211 FWDLETFEL----IGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV-DVGWSRLSDLNV-HEGKLLG 283 (819)
Q Consensus 211 iwDl~~~~~----l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~-~~~~s~i~~l~~-~dg~lLa 283 (819)
+||+..... ...+..|..+|++++|+|||++|++|+.| .|+|||..+.++...+ ..+...+..+.+ +||++|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~la 328 (365)
T 4h5i_A 249 KISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVA 328 (365)
T ss_dssp EEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEE
T ss_pred ecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEE
Confidence 999877653 34567888999999999999999999887 6999999999988764 677888888877 7999999
Q ss_pred EEEcCCeEEEEEecC
Q 003445 284 CSYNQSCVGVWVVDI 298 (819)
Q Consensus 284 ~~~~Dg~V~IW~ld~ 298 (819)
+++.|++|+||++..
T Consensus 329 S~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 329 SVSAANTIHIIKLPL 343 (365)
T ss_dssp EEETTSEEEEEECCT
T ss_pred EEeCCCeEEEEEcCC
Confidence 999999999999854
No 82
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.6e-30 Score=310.19 Aligned_cols=246 Identities=26% Similarity=0.484 Sum_probs=219.4
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
....+.+|...|++++|+| ++++|++|+.||.|+|||+.++.....+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus 422 ~~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd 500 (694)
T 3dm0_A 422 AQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500 (694)
T ss_dssp EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ccceecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence 3467899999999999999 678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEE---cCCCCCeEEEEEecCC--CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 003445 88 LEEAKIVRTL---TGHRSNCISVDFHPFG--EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG 162 (819)
Q Consensus 88 l~s~~~i~~l---~~h~~~I~sl~fsp~g--~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs 162 (819)
+......... .+|...|.+++|+|++ ..|++|+.|+.|++||++++++...+.+|...|++++|+|+|++|++|+
T Consensus 501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~ 580 (694)
T 3dm0_A 501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG 580 (694)
T ss_dssp TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence 8765443332 3688899999999987 5899999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCC---------------
Q 003445 163 EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET--------------- 227 (819)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~--------------- 227 (819)
.||.|++||+++++.+..+. +...|.+++|+|++.+|++++ ++.|++||+++++.+..+..+.
T Consensus 581 ~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (694)
T 3dm0_A 581 KDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAAT 658 (694)
T ss_dssp TTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--------------
T ss_pred CCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccC
Confidence 99999999999999888776 456899999999999888876 5669999999999887764321
Q ss_pred ----CCeeEEEEeCCCCEEEEEECCC-EEEEEec
Q 003445 228 ----SGVRCLTFNPDGRTLLCGLHES-LKVFSWE 256 (819)
Q Consensus 228 ----~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~ 256 (819)
..+.+++|+|+|++|++|+.|+ |+||++.
T Consensus 659 ~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 659 KRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp --CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 1368899999999999998875 9999975
No 83
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=8.9e-31 Score=289.50 Aligned_cols=240 Identities=18% Similarity=0.300 Sum_probs=208.1
Q ss_pred eccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCC---CCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGH---TSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (819)
Q Consensus 13 ~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h---~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (819)
.+|...|.+++|+|+++.+|++|+.||.|++||+.. ..+..+..| ...|.+++|+|++.+|++|+.||.|++||+
T Consensus 115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~- 192 (383)
T 3ei3_B 115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL- 192 (383)
T ss_dssp CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-
T ss_pred CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-
Confidence 479999999999997778999999999999999985 555555544 488999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCC----CeEEEEEecCCCCeEEEEEcC-CCCEEEEEEC
Q 003445 90 EAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRK----KGCIHTYKGHTRGVNAIRFTP-DGRWVVSGGE 163 (819)
Q Consensus 90 s~~~i~~l~~h~~~I~sl~fsp~g~-~Lasgs~Dg~I~IwDi~t----~~~i~~~~~h~~~I~sl~fsp-dg~~L~sgs~ 163 (819)
+++.+..+.+|...|.+++|+|+++ +|++++.|+.|++||+++ +.++..+ +|...|.+++|+| ++.+|++++.
T Consensus 193 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~ 271 (383)
T 3ei3_B 193 DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ 271 (383)
T ss_dssp TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES
T ss_pred CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC
Confidence 5788889999999999999999999 999999999999999997 6677776 5999999999999 9999999999
Q ss_pred CCeEEEEECCCCeEEEEEecCC-----------------CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC-
Q 003445 164 DNTVKLWDLTAGKLLHDFKCHE-----------------GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP- 225 (819)
Q Consensus 164 Dg~I~IwDl~t~~~i~~~~~h~-----------------~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~- 225 (819)
|+.|++||+++++....+..|. +.+..++|+|++.+ +|+.||.|++||+.+++.+..+..
T Consensus 272 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~ 349 (383)
T 3ei3_B 272 RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDP 349 (383)
T ss_dssp SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBT
T ss_pred CCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCC
Confidence 9999999999887766665442 23444556666655 667899999999999999999876
Q ss_pred -CCCCeeEEEEeCCCCEEEEEECCCEEEEEecC
Q 003445 226 -ETSGVRCLTFNPDGRTLLCGLHESLKVFSWEP 257 (819)
Q Consensus 226 -~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~ 257 (819)
+...+.+++|+|+|++|++|+++.|++|++++
T Consensus 350 ~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 350 NAAGIISLNKFSPTGDVLASGMGFNILIWNRED 382 (383)
T ss_dssp TBCSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred CCCceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence 45677888999999999999877899999864
No 84
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.98 E-value=4.4e-30 Score=287.12 Aligned_cols=248 Identities=21% Similarity=0.373 Sum_probs=220.1
Q ss_pred EEec-cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 11 EFVA-HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (819)
Q Consensus 11 ~~~~-H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (819)
.+.. |...|++++|+| ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++| ++.+|++|+.||.|++||+.
T Consensus 128 ~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~ 204 (401)
T 4aez_A 128 LAETDESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVR 204 (401)
T ss_dssp EEECCTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred eeecCCCCCEEEEEECC-CCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecc
Confidence 3443 889999999999 7789999999999999999999999999999999999999 56799999999999999998
Q ss_pred -CCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEE--CCC
Q 003445 90 -EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR-WVVSGG--EDN 165 (819)
Q Consensus 90 -s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~-~L~sgs--~Dg 165 (819)
....+..+.+|...|.+++|+|++.+|++|+.||.|++||++++..+..+..|...|.+++|+|++. ++++++ .|+
T Consensus 205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~ 284 (401)
T 4aez_A 205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK 284 (401)
T ss_dssp SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTC
T ss_pred cCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCC
Confidence 5677888999999999999999999999999999999999999999999999999999999999765 555554 699
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE--CCCeEEEEECCCCeEEE--EeCCCCCCeeEEEEeCCCCE
Q 003445 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS--ADRTVKFWDLETFELIG--SAGPETSGVRCLTFNPDGRT 241 (819)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs--~Dg~I~iwDl~~~~~l~--~~~~~~~~I~sl~fspdg~~ 241 (819)
.|++||+.+++.+..+. +...|.+++|+|++.+|++++ .||.|++||+.+++... .+..|...|.+++|+|+|++
T Consensus 285 ~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~ 363 (401)
T 4aez_A 285 QIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRI 363 (401)
T ss_dssp EEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSE
T ss_pred EEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCE
Confidence 99999999999998887 677899999999999999954 89999999999866544 46789999999999999999
Q ss_pred EEEEECC-CEEEEEecCCceee
Q 003445 242 LLCGLHE-SLKVFSWEPIRCHD 262 (819)
Q Consensus 242 Lasgs~d-~I~Vwd~~~~~~~~ 262 (819)
|++++.+ .|++|++.+.+...
T Consensus 364 l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 364 LSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp EEEECTTSEEEEEECCC-----
T ss_pred EEEEeCCCcEEEEECCCCcccc
Confidence 9999877 59999998876543
No 85
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.4e-30 Score=281.45 Aligned_cols=251 Identities=20% Similarity=0.297 Sum_probs=217.2
Q ss_pred ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC--CCeEEEEEcCCCCCeEEEEEecC--CCEEEEEECCCcE
Q 003445 50 NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE--EAKIVRTLTGHRSNCISVDFHPF--GEFFASGSLDTNL 125 (819)
Q Consensus 50 ~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~--s~~~i~~l~~h~~~I~sl~fsp~--g~~Lasgs~Dg~I 125 (819)
+.+..+.+|...|.+++|+|++++|++|+.||.|++||+. +++.+..+.+|...|.+++|+++ +++|++++.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 4556678999999999999999999999999999999998 66778889999999999999977 8999999999999
Q ss_pred EEEECCCCe--EEEEEecCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCe--EEEEEecCCCCeEEEEEeC----
Q 003445 126 KIWDIRKKG--CIHTYKGHTRGVNAIRFTPD--GRWVVSGGEDNTVKLWDLTAGK--LLHDFKCHEGQIQCIDFHP---- 195 (819)
Q Consensus 126 ~IwDi~t~~--~i~~~~~h~~~I~sl~fspd--g~~L~sgs~Dg~I~IwDl~t~~--~i~~~~~h~~~I~sl~fsp---- 195 (819)
++||+++++ .+..+..|...|.+++|+|+ +.+|++++.||.|++||++.+. ....+..|...|.+++|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999987 77788889999999999999 9999999999999999999873 4456678999999999999
Q ss_pred ---------CCCEEEEEECCCeEEEEECCCCe----EEEEeCCCCCCeeEEEEeCC---CCEEEEEECC-CEEEEEecCC
Q 003445 196 ---------HEFLLATGSADRTVKFWDLETFE----LIGSAGPETSGVRCLTFNPD---GRTLLCGLHE-SLKVFSWEPI 258 (819)
Q Consensus 196 ---------dg~~Lasgs~Dg~I~iwDl~~~~----~l~~~~~~~~~I~sl~fspd---g~~Lasgs~d-~I~Vwd~~~~ 258 (819)
++.+|++|+.||.|++||++++. .+..+..|...|.+++|+|+ +.+|++++.+ .|++|++...
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 69999999999999999997653 55678889999999999999 8999998876 5999999886
Q ss_pred c---eeeee--eccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCCc
Q 003445 259 R---CHDAV--DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISR 300 (819)
Q Consensus 259 ~---~~~~~--~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~ 300 (819)
. ..... ..+...+..+.+ +++++|++++.||.|++|+++...
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 4 12222 224455666666 789999999999999999998643
No 86
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.98 E-value=2.1e-30 Score=283.24 Aligned_cols=250 Identities=17% Similarity=0.236 Sum_probs=220.3
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEE--ecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILS--LSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~--l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (819)
.+..+.+|...|++++|+| ++.+|++|+.||.|++||+.+++.... +..|...|.+++|+|++++|++++.||.|++
T Consensus 44 ~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i 122 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 122 (372)
T ss_dssp EEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEE
T ss_pred eeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEE
Confidence 6778889999999999999 778899999999999999988765443 4679999999999999999999999999999
Q ss_pred EECCCCe---EE-EEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC------------------CCCeEEEEEecCC
Q 003445 86 WDLEEAK---IV-RTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDI------------------RKKGCIHTYKGHT 143 (819)
Q Consensus 86 WDl~s~~---~i-~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi------------------~t~~~i~~~~~h~ 143 (819)
||+..+. .. ....+|...|.+++|+|++++|++++.||.|++||+ ..++.+..+..|.
T Consensus 123 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (372)
T 1k8k_C 123 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC 202 (372)
T ss_dssp EEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS
T ss_pred EEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC
Confidence 9998776 23 333678999999999999999999999999999995 4678889999999
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC--CeE--
Q 003445 144 RGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET--FEL-- 219 (819)
Q Consensus 144 ~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~--~~~-- 219 (819)
..|.+++|+|++++|++++.||.|++||+++++.+..+..|...|.+++|+|++.+|++| .|+.|++||+.. ++.
T Consensus 203 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~ 281 (372)
T 1k8k_C 203 GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSF 281 (372)
T ss_dssp SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEE
Confidence 999999999999999999999999999999999999999999999999999999988888 899999999987 431
Q ss_pred E------------------------------------EEe-CCCCCCeeEEEEe-CCC---CEEEEEECC-CEEEEEecC
Q 003445 220 I------------------------------------GSA-GPETSGVRCLTFN-PDG---RTLLCGLHE-SLKVFSWEP 257 (819)
Q Consensus 220 l------------------------------------~~~-~~~~~~I~sl~fs-pdg---~~Lasgs~d-~I~Vwd~~~ 257 (819)
+ ..+ .+|...|++++|. ++| .+|++|+.| .|++|++++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 282 GGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp CCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred eeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 0 223 4788999999966 666 899999877 599999876
Q ss_pred Cc
Q 003445 258 IR 259 (819)
Q Consensus 258 ~~ 259 (819)
.+
T Consensus 362 ~~ 363 (372)
T 1k8k_C 362 LE 363 (372)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 87
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=5.4e-30 Score=274.55 Aligned_cols=250 Identities=18% Similarity=0.315 Sum_probs=218.6
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----eEEEEEcCCCCCeEEEEEec--CCCEEEEEECCCcEEE
Q 003445 54 SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA----KIVRTLTGHRSNCISVDFHP--FGEFFASGSLDTNLKI 127 (819)
Q Consensus 54 ~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~----~~i~~l~~h~~~I~sl~fsp--~g~~Lasgs~Dg~I~I 127 (819)
.+.+|.+.|++++|+|++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+| ++.+|++|+.||.|++
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 46789999999999999999999999999999999876 57788889999999999999 6999999999999999
Q ss_pred EECCCC---------eEEEEEecCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCeEEEEEe-------------c
Q 003445 128 WDIRKK---------GCIHTYKGHTRGVNAIRFTPD--GRWVVSGGEDNTVKLWDLTAGKLLHDFK-------------C 183 (819)
Q Consensus 128 wDi~t~---------~~i~~~~~h~~~I~sl~fspd--g~~L~sgs~Dg~I~IwDl~t~~~i~~~~-------------~ 183 (819)
||++++ +.+..+..|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+. .
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN 165 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCC
Confidence 999887 668888899999999999999 9999999999999999998876443322 4
Q ss_pred CCCCeEEEEEeCC---CCEEEEEECCCeEEEEECCCCeE--EEEeCCCCCCeeEEEEeCCC----CEEEEEECC-CEEEE
Q 003445 184 HEGQIQCIDFHPH---EFLLATGSADRTVKFWDLETFEL--IGSAGPETSGVRCLTFNPDG----RTLLCGLHE-SLKVF 253 (819)
Q Consensus 184 h~~~I~sl~fspd---g~~Lasgs~Dg~I~iwDl~~~~~--l~~~~~~~~~I~sl~fspdg----~~Lasgs~d-~I~Vw 253 (819)
|...+.+++|+|+ +.+|++++.|+.+.+|+...++. +..+..|...|.+++|+|++ ++|++++.+ .|++|
T Consensus 166 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iw 245 (351)
T 3f3f_A 166 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIF 245 (351)
T ss_dssp CSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEE
T ss_pred cccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEE
Confidence 6778999999997 99999999999999998888765 67788899999999999998 789988876 59999
Q ss_pred EecCC----------------------------------------------ceeeeeeccccceeEeEe-cCCCEEEEEE
Q 003445 254 SWEPI----------------------------------------------RCHDAVDVGWSRLSDLNV-HEGKLLGCSY 286 (819)
Q Consensus 254 d~~~~----------------------------------------------~~~~~~~~~~s~i~~l~~-~dg~lLa~~~ 286 (819)
++... +....+..+...+..+.+ +++++|++++
T Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 325 (351)
T 3f3f_A 246 KITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAG 325 (351)
T ss_dssp EEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEE
T ss_pred eCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEec
Confidence 99864 344445556677888777 6889999999
Q ss_pred cCCeEEEEEecCCceee
Q 003445 287 NQSCVGVWVVDISRIEP 303 (819)
Q Consensus 287 ~Dg~V~IW~ld~~~~~p 303 (819)
.||.|+||++..++...
T Consensus 326 ~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 326 DDGKVRLWKATYSNEFK 342 (351)
T ss_dssp TTSCEEEEEECTTSCEE
T ss_pred CCCcEEEEecCcCcchh
Confidence 99999999999876543
No 88
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.1e-29 Score=270.36 Aligned_cols=247 Identities=23% Similarity=0.405 Sum_probs=223.4
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC---ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP---NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTI 83 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~---~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I 83 (819)
.....+..|...|.+++|+| ++.+|++|+.||.|++|++... +.+..+.+|...|.++.| ++.+|++++.||.|
T Consensus 50 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i 126 (313)
T 3odt_A 50 WLGTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTA 126 (313)
T ss_dssp EEEEEEEECSSCEEEEEEET-TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred EEEEEeecCCccEEEEEECC-CCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCE
Confidence 44667888999999999999 7789999999999999998554 567788899999999999 67799999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEE
Q 003445 84 KLWDLEEAKIVRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYKG-HTRGVNAIRFTPDGRWVVSG 161 (819)
Q Consensus 84 ~IWDl~s~~~i~~l~~h~~~I~sl~fsp-~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~-h~~~I~sl~fspdg~~L~sg 161 (819)
++|| .++.+..+..|...+.+++|.| ++++|++++.||.|++|| ..+....+.. |...+.+++|+|++. ++++
T Consensus 127 ~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~ 201 (313)
T 3odt_A 127 KVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISC 201 (313)
T ss_dssp EEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEE
T ss_pred EEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEc
Confidence 9999 7788889999999999999998 899999999999999999 5566777776 899999999999988 9999
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCE
Q 003445 162 GEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRT 241 (819)
Q Consensus 162 s~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~ 241 (819)
+.||.|++||+++++.+..+..|...|.+++|+|++ .|++++.||.|++||+.+++.+..+..+...|.+++|+|++++
T Consensus 202 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 280 (313)
T 3odt_A 202 SNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDI 280 (313)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCE
T ss_pred cCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCE
Confidence 999999999999999999999999999999999999 6889999999999999999999999999999999999999997
Q ss_pred EEEEECCCEEEEEecCCceee
Q 003445 242 LLCGLHESLKVFSWEPIRCHD 262 (819)
Q Consensus 242 Lasgs~d~I~Vwd~~~~~~~~ 262 (819)
++++.++.|++|++++.+...
T Consensus 281 ~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 281 IVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp EEEETTSCEEEEESCGGGCCC
T ss_pred EEEeCCCcEEEEeCCCCceee
Confidence 766666689999998766543
No 89
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.98 E-value=9.1e-31 Score=284.00 Aligned_cols=247 Identities=19% Similarity=0.412 Sum_probs=215.0
Q ss_pred EeccCCCEEEEEEeeCC--CcEEEEEeCCCeEEEEECCCCc-eEEEecCCCCCeEEEEE------cCCCCEEEEEECCCe
Q 003445 12 FVAHSSTVNCLKIGRKS--SRVLVTGGEDHKVNLWAIGKPN-AILSLSGHTSGIDSVSF------DSSEVLVAAGAASGT 82 (819)
Q Consensus 12 ~~~H~~~V~~lafsp~~--~~~Latgs~Dg~V~IWdl~~~~-~i~~l~~h~~~V~~l~f------spdg~~Lasgs~DG~ 82 (819)
..+|...|++++|+|++ +.+|++|+.||.|++||+.+++ .+..+.+|...|.++.| ++++++|++++.||.
T Consensus 61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~ 140 (357)
T 3i2n_A 61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT 140 (357)
T ss_dssp EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence 34799999999999964 6889999999999999999888 88899999999999955 689999999999999
Q ss_pred EEEEECCCCe-EEEEEcCCCC----CeEEEE----EecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC
Q 003445 83 IKLWDLEEAK-IVRTLTGHRS----NCISVD----FHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP 153 (819)
Q Consensus 83 I~IWDl~s~~-~i~~l~~h~~----~I~sl~----fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fsp 153 (819)
|++||+.+++ .+..+..|.. .+.+++ |+|++.+|++++.||.|++||+++++.... ..|...|.+++|+|
T Consensus 141 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~ 219 (357)
T 3i2n_A 141 VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDR 219 (357)
T ss_dssp EEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESC
T ss_pred EEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCC
Confidence 9999999886 6777766554 789998 678999999999999999999999987555 55889999999999
Q ss_pred ---CCCEEEEEECCCeEEEEECCCCeEEEEE-----ecCCCCeEEEEEeCCCC-EEEEEECCCeEEEEECCCC-------
Q 003445 154 ---DGRWVVSGGEDNTVKLWDLTAGKLLHDF-----KCHEGQIQCIDFHPHEF-LLATGSADRTVKFWDLETF------- 217 (819)
Q Consensus 154 ---dg~~L~sgs~Dg~I~IwDl~t~~~i~~~-----~~h~~~I~sl~fspdg~-~Lasgs~Dg~I~iwDl~~~------- 217 (819)
++.+|++++.||.|++||+++++....+ ..|...|++++|+|++. +|++|+.||.|++||++.+
T Consensus 220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 299 (357)
T 3i2n_A 220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD 299 (357)
T ss_dssp SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC
T ss_pred CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc
Confidence 9999999999999999999877654444 38999999999999998 8999999999999999753
Q ss_pred ------------eEEEEeCCCCCCeeEEEEeCCCCEEE-EEECC-CEEEEEecCCc
Q 003445 218 ------------ELIGSAGPETSGVRCLTFNPDGRTLL-CGLHE-SLKVFSWEPIR 259 (819)
Q Consensus 218 ------------~~l~~~~~~~~~I~sl~fspdg~~La-sgs~d-~I~Vwd~~~~~ 259 (819)
+.+..+..|...|.+++|+|+|++|+ +++.+ .+++|++...+
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 300 SEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp TTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 46777888999999999999999998 67765 69999997654
No 90
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.98 E-value=1.9e-30 Score=293.50 Aligned_cols=252 Identities=27% Similarity=0.438 Sum_probs=224.5
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC----------CceEEEecCCCCCeEEEEEcCCCC-EEE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK----------PNAILSLSGHTSGIDSVSFDSSEV-LVA 75 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~----------~~~i~~l~~h~~~V~~l~fspdg~-~La 75 (819)
.++....+|.+.|++++|+|+++.+|++|+.||.|++|++.+ ...+..+.+|...|.+++|+|++. +|+
T Consensus 119 ~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 198 (430)
T 2xyi_A 119 IEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL 198 (430)
T ss_dssp EEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEE
T ss_pred eEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEE
Confidence 345667889999999999996688999999999999999976 677888899999999999999988 999
Q ss_pred EEECCCeEEEEECCCCeE-------EEEEcCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCC---eEEEEEecCCC
Q 003445 76 AGAASGTIKLWDLEEAKI-------VRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKK---GCIHTYKGHTR 144 (819)
Q Consensus 76 sgs~DG~I~IWDl~s~~~-------i~~l~~h~~~I~sl~fsp-~g~~Lasgs~Dg~I~IwDi~t~---~~i~~~~~h~~ 144 (819)
+|+.||.|++||+..+.. ...+.+|...|.+++|+| ++.+|++++.||.|++||++++ ..+..+..|..
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 278 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA 278 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence 999999999999987321 456778999999999999 6789999999999999999987 57778889999
Q ss_pred CeEEEEEcCCCC-EEEEEECCCeEEEEECCC-CeEEEEEecCCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCC-----
Q 003445 145 GVNAIRFTPDGR-WVVSGGEDNTVKLWDLTA-GKLLHDFKCHEGQIQCIDFHPHE-FLLATGSADRTVKFWDLET----- 216 (819)
Q Consensus 145 ~I~sl~fspdg~-~L~sgs~Dg~I~IwDl~t-~~~i~~~~~h~~~I~sl~fspdg-~~Lasgs~Dg~I~iwDl~~----- 216 (819)
.|++++|+|++. +|++|+.||.|++||+++ +..+..+..|...|.+++|+|++ .+|++++.||.|++||+..
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~ 358 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 358 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc
Confidence 999999999887 688999999999999998 56788888999999999999998 5799999999999999987
Q ss_pred ---------CeEEEEeCCCCCCeeEEEEeCCCC-EEEEEECCC-EEEEEecCC
Q 003445 217 ---------FELIGSAGPETSGVRCLTFNPDGR-TLLCGLHES-LKVFSWEPI 258 (819)
Q Consensus 217 ---------~~~l~~~~~~~~~I~sl~fspdg~-~Lasgs~d~-I~Vwd~~~~ 258 (819)
.+.+..+..|...|++++|+|++. +|++++.++ |+||++...
T Consensus 359 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 359 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 367888889999999999999999 788877764 999998753
No 91
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.98 E-value=4.9e-29 Score=268.84 Aligned_cols=250 Identities=26% Similarity=0.441 Sum_probs=222.9
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
..+..+.+|...|.+++|+| ++.+|++|+.|+.|++|+............+...+..+.+++++.+|++|+.||.+++|
T Consensus 77 ~~~~~l~~h~~~V~~~~~s~-dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~ 155 (340)
T 4aow_A 77 IPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 155 (340)
T ss_dssp EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred eeeEEEeCCCCCEEEEEECC-CCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEE
Confidence 35678899999999999999 77899999999999999999999999888899999999999999999999999999999
Q ss_pred ECCCCeE-EEEEcCCCCCeEEEEEecCC--CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 003445 87 DLEEAKI-VRTLTGHRSNCISVDFHPFG--EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE 163 (819)
Q Consensus 87 Dl~s~~~-i~~l~~h~~~I~sl~fsp~g--~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~ 163 (819)
|+..... ...+.+|...+..++|++++ .++++++.|+.|++||+++++.+..+.+|...|++++|+|++++|++|+.
T Consensus 156 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~ 235 (340)
T 4aow_A 156 NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK 235 (340)
T ss_dssp CTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC
Confidence 9986654 34456789999999998865 47899999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeC---------CCCCCeeEEE
Q 003445 164 DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG---------PETSGVRCLT 234 (819)
Q Consensus 164 Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~---------~~~~~I~sl~ 234 (819)
||.|++||+++++.+..+.. ...|.+++|+|++.+++ ++.|+.|++||++++..+..+. .|...|++++
T Consensus 236 Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 313 (340)
T 4aow_A 236 DGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLC-AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA 313 (340)
T ss_dssp TCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEEE-EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEE
T ss_pred CCeEEEEEeccCceeeeecC-CceEEeeecCCCCceee-ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEE
Confidence 99999999999999988874 56899999999987665 4569999999999988776653 5678899999
Q ss_pred EeCCCCEEEEEECC-CEEEEEecCCc
Q 003445 235 FNPDGRTLLCGLHE-SLKVFSWEPIR 259 (819)
Q Consensus 235 fspdg~~Lasgs~d-~I~Vwd~~~~~ 259 (819)
|+|+|++|++|+.| .|+||++.++.
T Consensus 314 ~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 314 WSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999999877 59999998764
No 92
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.8e-30 Score=316.55 Aligned_cols=162 Identities=15% Similarity=0.248 Sum_probs=145.2
Q ss_pred eccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003445 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK 92 (819)
Q Consensus 13 ~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~ 92 (819)
..|...|++++|+| + ++|++++.|+.|+|||+.+++.+..+. |...|++++|+|++++|++|+.||.|++||+.+++
T Consensus 55 ~~~~~~V~~l~fsp-g-~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~ 131 (902)
T 2oaj_A 55 LEDRSAIKEMRFVK-G-IYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQ 131 (902)
T ss_dssp CSSCCCEEEEEEET-T-TEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTE
T ss_pred cCCCCCEEEEEEcC-C-CEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence 45888999999999 4 489999999999999999999998886 77899999999999999999999999999999887
Q ss_pred EE-----------EEEcCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCeEEEEEecC------------------
Q 003445 93 IV-----------RTLTGHRSNCISVDFHPF-GEFFASGSLDTNLKIWDIRKKGCIHTYKGH------------------ 142 (819)
Q Consensus 93 ~i-----------~~l~~h~~~I~sl~fsp~-g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h------------------ 142 (819)
.. ..+.+|...|.+++|+|+ +..|++|+.||.| +||+++++++..+..|
T Consensus 132 ~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h 210 (902)
T 2oaj_A 132 LSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKR 210 (902)
T ss_dssp EEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCB
T ss_pred cccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccccccccc
Confidence 64 223678899999999996 4689999999999 9999999999888766
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 003445 143 TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLL 178 (819)
Q Consensus 143 ~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i 178 (819)
...|++++|+|+|.+|++|+.||.|++||+++++++
T Consensus 211 ~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 211 TPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp CCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 467999999999999999999999999999776544
No 93
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=6.7e-31 Score=284.84 Aligned_cols=245 Identities=18% Similarity=0.290 Sum_probs=204.7
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEcCCCCCeEEEEEec--CCCEEEEEECCCcEEEEE
Q 003445 54 SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK--IVRTLTGHRSNCISVDFHP--FGEFFASGSLDTNLKIWD 129 (819)
Q Consensus 54 ~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~--~i~~l~~h~~~I~sl~fsp--~g~~Lasgs~Dg~I~IwD 129 (819)
.+.+|.+.|++++|+|++++|++|+.|++|++||+.++. .+..+.+|...|.+++|++ ++++|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456899999999999999999999999999999998875 4678899999999999976 488999999999999999
Q ss_pred CCCC--eEEEEEecCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCeE---EEEEecCCCCeEEEEEeCC------
Q 003445 130 IRKK--GCIHTYKGHTRGVNAIRFTPD--GRWVVSGGEDNTVKLWDLTAGKL---LHDFKCHEGQIQCIDFHPH------ 196 (819)
Q Consensus 130 i~t~--~~i~~~~~h~~~I~sl~fspd--g~~L~sgs~Dg~I~IwDl~t~~~---i~~~~~h~~~I~sl~fspd------ 196 (819)
++++ ..+..+.+|...|.+++|+|+ +.+|++|+.|+.|++||++.+.. ...+.+|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 9886 467778899999999999997 88999999999999999987632 3345578889999999997
Q ss_pred -----------CCEEEEEECCCeEEEEECCCC---eEEEEeCCCCCCeeEEEEeCCC----CEEEEEECC-CEEEEEecC
Q 003445 197 -----------EFLLATGSADRTVKFWDLETF---ELIGSAGPETSGVRCLTFNPDG----RTLLCGLHE-SLKVFSWEP 257 (819)
Q Consensus 197 -----------g~~Lasgs~Dg~I~iwDl~~~---~~l~~~~~~~~~I~sl~fspdg----~~Lasgs~d-~I~Vwd~~~ 257 (819)
+.+|++|+.|++|++||++.. +.+..+..|...|.+++|+|++ .+|++++.| .|++|+.+.
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 478999999999999999754 4677788999999999999986 789988877 599999876
Q ss_pred Cc----eeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEecC
Q 003445 258 IR----CHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 258 ~~----~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~ 298 (819)
.. ....+..+...+..+.+ +++++|++++.|+.|+||+...
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 21 12233334456666666 7899999999999999999864
No 94
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.6e-30 Score=289.88 Aligned_cols=279 Identities=11% Similarity=0.117 Sum_probs=233.5
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc---eEEEecC------------------------------------
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN---AILSLSG------------------------------------ 57 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~---~i~~l~~------------------------------------ 57 (819)
.+|.|++|+++ +++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~d-g~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRD-GSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSS-SSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecCC-CCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 57899999995 4566655 57899999998888 5555443
Q ss_pred ------------------CCCCeEEEEEcCCCCEE-EEEECCCeEEEEECC--CCeEEEEEc--CCCCCeEEEEEecCCC
Q 003445 58 ------------------HTSGIDSVSFDSSEVLV-AAGAASGTIKLWDLE--EAKIVRTLT--GHRSNCISVDFHPFGE 114 (819)
Q Consensus 58 ------------------h~~~V~~l~fspdg~~L-asgs~DG~I~IWDl~--s~~~i~~l~--~h~~~I~sl~fsp~g~ 114 (819)
|.+.|.+++|+|++++| ++|+.||.|++||+. +++.+..+. .|...|.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 33479999999999996 889899999999999 888888776 5678999999999999
Q ss_pred EEEEEECCCcEEEEECCCCeEEE----EEecCCCCeEEEEEcCC---CCEEEEEECCCeEEEEECCCCeEEEE-EecCCC
Q 003445 115 FFASGSLDTNLKIWDIRKKGCIH----TYKGHTRGVNAIRFTPD---GRWVVSGGEDNTVKLWDLTAGKLLHD-FKCHEG 186 (819)
Q Consensus 115 ~Lasgs~Dg~I~IwDi~t~~~i~----~~~~h~~~I~sl~fspd---g~~L~sgs~Dg~I~IwDl~t~~~i~~-~~~h~~ 186 (819)
+|++|+.+|.|++|++.++.... .+.+|...|.+++|+|+ +++|++|+.|+.|++||+++++.+.. +.+|..
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~ 242 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH 242 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence 99999999999999998876543 67789999999999999 99999999999999999999988877 558999
Q ss_pred CeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC-------------------------CCCCeeEEEEeCCCCE
Q 003445 187 QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP-------------------------ETSGVRCLTFNPDGRT 241 (819)
Q Consensus 187 ~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~-------------------------~~~~I~sl~fspdg~~ 241 (819)
.|.+++|+ ++.+|++|+.|+.|++||+.+++.+..+.. ....|.+++|+|++++
T Consensus 243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 321 (450)
T 2vdu_B 243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF 321 (450)
T ss_dssp CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence 99999999 999999999999999999999998877652 2457899999999999
Q ss_pred EEEEE-CC-CEEEEEe--cCC---ceeeeeeccccceeEeEecCCCEEEEEEc-------CCeEEEEEecCC
Q 003445 242 LLCGL-HE-SLKVFSW--EPI---RCHDAVDVGWSRLSDLNVHEGKLLGCSYN-------QSCVGVWVVDIS 299 (819)
Q Consensus 242 Lasgs-~d-~I~Vwd~--~~~---~~~~~~~~~~s~i~~l~~~dg~lLa~~~~-------Dg~V~IW~ld~~ 299 (819)
|++++ .+ .|++|++ ... +....+..+ ..+..+.+..+.++++... +..|.+|.++..
T Consensus 322 l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 322 VAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred EEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 99987 33 6999999 554 555666666 6677777766666655443 556899988754
No 95
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.9e-30 Score=289.73 Aligned_cols=252 Identities=18% Similarity=0.331 Sum_probs=219.5
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC-------ceEEEecCCCCCeEEEEEcCCC-CEEEEEECC
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-------NAILSLSGHTSGIDSVSFDSSE-VLVAAGAAS 80 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~-------~~i~~l~~h~~~V~~l~fspdg-~~Lasgs~D 80 (819)
+..+.+|.+.|++++|+|.++.+|++|+.||.|+|||+.++ +.+..+.+|...|.+++|+|++ .+|++|+.|
T Consensus 74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d 153 (402)
T 2aq5_A 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD 153 (402)
T ss_dssp CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT
T ss_pred CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC
Confidence 34577899999999999977789999999999999999887 6788899999999999999998 699999999
Q ss_pred CeEEEEECCCCeEEEEE--cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE-ecCCCC-eEEEEEcCCCC
Q 003445 81 GTIKLWDLEEAKIVRTL--TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-KGHTRG-VNAIRFTPDGR 156 (819)
Q Consensus 81 G~I~IWDl~s~~~i~~l--~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~-~~h~~~-I~sl~fspdg~ 156 (819)
|.|++||+.+++.+..+ .+|...|.+++|+|++++|++++.||.|++||+++++.+..+ ..|... +.++.|+|++.
T Consensus 154 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (402)
T 2aq5_A 154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK 233 (402)
T ss_dssp SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE
T ss_pred CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc
Confidence 99999999999999999 889999999999999999999999999999999999999998 688776 89999999999
Q ss_pred EEEEE---ECCCeEEEEECCCCeE-EEEEe-cCCCCeEEEEEeCCCCEEEE-EECCCeEEEEECCCCeE-EEEeCC--CC
Q 003445 157 WVVSG---GEDNTVKLWDLTAGKL-LHDFK-CHEGQIQCIDFHPHEFLLAT-GSADRTVKFWDLETFEL-IGSAGP--ET 227 (819)
Q Consensus 157 ~L~sg---s~Dg~I~IwDl~t~~~-i~~~~-~h~~~I~sl~fspdg~~Las-gs~Dg~I~iwDl~~~~~-l~~~~~--~~ 227 (819)
+|++| +.|+.|++||+++++. +.... .|...+.+++|+|++.+|++ |+.||.|++||+.+++. +..+.. +.
T Consensus 234 ~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~ 313 (402)
T 2aq5_A 234 ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSK 313 (402)
T ss_dssp EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCS
T ss_pred EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccC
Confidence 99999 7899999999998654 33332 46778999999999999875 55799999999998773 333222 56
Q ss_pred CCeeEEEEeCCCCEEEEEECCCEEEEEecCCcee
Q 003445 228 SGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCH 261 (819)
Q Consensus 228 ~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~ 261 (819)
..|.+++|+|++.+++++ ++.+++|++.+..+.
T Consensus 314 ~~v~~~~~sp~~~~~~s~-~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 314 ESQRGMGYMPKRGLEVNK-CEIARFYKLHERKCE 346 (402)
T ss_dssp SCCSEEEECCGGGSCGGG-TEEEEEEEEETTEEE
T ss_pred CcccceEEecccccceec-ceeEEEEEcCCCcEE
Confidence 889999999999988753 447999999876543
No 96
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=6.6e-29 Score=279.55 Aligned_cols=250 Identities=22% Similarity=0.434 Sum_probs=221.1
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
.++..+.+|...|+||+|+| ++.+|++|+.||.|+|||+.+++.+..+.+|...+.++.|+ +.+|++|+.|+.+++|
T Consensus 138 ~~~~~~~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~ 214 (420)
T 4gga_A 138 LQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHH 214 (420)
T ss_dssp EEEEECCSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEE
T ss_pred EEEEEecCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEe
Confidence 34445567888999999999 67899999999999999999999999999999999998885 6799999999999999
Q ss_pred ECCC-CeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe----EEEEEecCCCCeEEEEEcCCCC-EEEE
Q 003445 87 DLEE-AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG----CIHTYKGHTRGVNAIRFTPDGR-WVVS 160 (819)
Q Consensus 87 Dl~s-~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~----~i~~~~~h~~~I~sl~fspdg~-~L~s 160 (819)
|... ...+..+.+|...+..+.|+|++.++++++.|+.|++||...++ .+.....|...|.+++|+|++. .+++
T Consensus 215 d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~ 294 (420)
T 4gga_A 215 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT 294 (420)
T ss_dssp ETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEE
T ss_pred eecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEE
Confidence 9886 45678889999999999999999999999999999999998764 3566778999999999999654 5554
Q ss_pred E--ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE--CCCeEEEEECCCCeEEEEeCCCCCCeeEEEEe
Q 003445 161 G--GEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS--ADRTVKFWDLETFELIGSAGPETSGVRCLTFN 236 (819)
Q Consensus 161 g--s~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs--~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fs 236 (819)
+ +.|+.|++||+.++++...+.. ...+.++.|+|++..+++++ .|+.|++||+.+++++..+.+|...|++++|+
T Consensus 295 ~~gs~D~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s 373 (420)
T 4gga_A 295 GGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS 373 (420)
T ss_dssp EECTTTCEEEEEETTTTEEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred EeecCCCEEEEEeCCccccceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 3 4799999999999999988875 46789999999999988876 68999999999999999999999999999999
Q ss_pred CCCCEEEEEECC-CEEEEEecCCce
Q 003445 237 PDGRTLLCGLHE-SLKVFSWEPIRC 260 (819)
Q Consensus 237 pdg~~Lasgs~d-~I~Vwd~~~~~~ 260 (819)
|||++|++|+.| .|+||++....+
T Consensus 374 pdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 374 PDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp TTSSCEEEEETTTEEEEECCSCSSC
T ss_pred CCCCEEEEEecCCeEEEEECCCCCc
Confidence 999999999877 599999865443
No 97
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4e-29 Score=309.06 Aligned_cols=285 Identities=14% Similarity=0.164 Sum_probs=232.0
Q ss_pred EEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003445 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE 90 (819)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s 90 (819)
...+|.+.|+|++|+| ++.+||+|+.||.|+||+....+....+. |...|.+++|+| +++|++++.|++|++||+.+
T Consensus 12 ~~~gh~~~V~~lafsp-dg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~ 88 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDF-TQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS 88 (902)
T ss_dssp EEEECSSCEEEEEEET-TTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTT
T ss_pred cccCCCCCcEEEEECC-CCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC
Confidence 4458999999999999 67899999999999999998777666554 888999999999 88999999999999999999
Q ss_pred CeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEE-----------EEEecCCCCeEEEEEcCC-CCEE
Q 003445 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI-----------HTYKGHTRGVNAIRFTPD-GRWV 158 (819)
Q Consensus 91 ~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i-----------~~~~~h~~~I~sl~fspd-g~~L 158 (819)
++.+..+. |...|.+++|+|++++|++|+.||.|++||++++.+. ..+.+|...|.+++|+|+ +..|
T Consensus 89 ~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l 167 (902)
T 2oaj_A 89 QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV 167 (902)
T ss_dssp CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence 99998887 7789999999999999999999999999999988764 123568899999999995 5789
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecC------------------CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEE
Q 003445 159 VSGGEDNTVKLWDLTAGKLLHDFKCH------------------EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI 220 (819)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~i~~~~~h------------------~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l 220 (819)
++|+.||.| +||+++++.+..+..| ...|++++|+|+|.+|++|+.||+|++||+++++++
T Consensus 168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 999999999 9999999998888765 467999999999999999999999999999999887
Q ss_pred EE--eC---C-------------CCCCeeEEEEe----CCC-CEEEEEECC------CEEEEEec---------------
Q 003445 221 GS--AG---P-------------ETSGVRCLTFN----PDG-RTLLCGLHE------SLKVFSWE--------------- 256 (819)
Q Consensus 221 ~~--~~---~-------------~~~~I~sl~fs----pdg-~~Lasgs~d------~I~Vwd~~--------------- 256 (819)
.. +. . +...|.+++|+ |++ .+|++|+.+ .+.+|++.
T Consensus 247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~ 326 (902)
T 2oaj_A 247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKN 326 (902)
T ss_dssp EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHH
T ss_pred EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhh
Confidence 64 21 1 24479999996 443 566777554 58888853
Q ss_pred ---CCceeeeeec-cccceeEeEe-----------cCCCEEEEEEcCCeEEEEEecCCc
Q 003445 257 ---PIRCHDAVDV-GWSRLSDLNV-----------HEGKLLGCSYNQSCVGVWVVDISR 300 (819)
Q Consensus 257 ---~~~~~~~~~~-~~s~i~~l~~-----------~dg~lLa~~~~Dg~V~IW~ld~~~ 300 (819)
..++...+.. ....+.++.+ ++...+++++.|+.|++|++..+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~ 385 (902)
T 2oaj_A 327 YYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGI 385 (902)
T ss_dssp HHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCC
T ss_pred hhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCC
Confidence 2233333322 1222333321 245588888999999999986653
No 98
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=9.8e-31 Score=296.09 Aligned_cols=255 Identities=21% Similarity=0.320 Sum_probs=210.8
Q ss_pred ccceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecC--CCCCeEEEEEcCCCCEEEEEECCCe
Q 003445 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSG--HTSGIDSVSFDSSEVLVAAGAASGT 82 (819)
Q Consensus 5 r~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~--h~~~V~~l~fspdg~~Lasgs~DG~ 82 (819)
....+..+.+|.+.|++|+|+|.++.+|++|+.||+|+|||+........... +...+.+++|++++.+|++|+.||.
T Consensus 153 ~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~ 232 (435)
T 4e54_B 153 DKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGN 232 (435)
T ss_dssp SCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSB
T ss_pred CceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCc
Confidence 33445567799999999999997888999999999999999976654443333 3446889999999999999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCeEEEE---EecCCCCeEEEEEcCCCCEE
Q 003445 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHT---YKGHTRGVNAIRFTPDGRWV 158 (819)
Q Consensus 83 I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~-~Lasgs~Dg~I~IwDi~t~~~i~~---~~~h~~~I~sl~fspdg~~L 158 (819)
|++||++ ++.+..+.+|...|.+++|+|++. +|++|+.|+.|++||+++.+.... ..+|...|++++|+|+|.+|
T Consensus 233 i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 311 (435)
T 4e54_B 233 VILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARL 311 (435)
T ss_dssp EEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEE
T ss_pred EeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCee
Confidence 9999986 456677889999999999999886 788999999999999987654333 35789999999999999999
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecCCC------CeEEEEEeCCCCEEEEEE------------CCCeEEEEECCCCeEE
Q 003445 159 VSGGEDNTVKLWDLTAGKLLHDFKCHEG------QIQCIDFHPHEFLLATGS------------ADRTVKFWDLETFELI 220 (819)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~i~~~~~h~~------~I~sl~fspdg~~Lasgs------------~Dg~I~iwDl~~~~~l 220 (819)
++++.||.|++||+.+++....+..|.. .+....|+|++.++++++ .++.|++||..+++.+
T Consensus 312 ~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~ 391 (435)
T 4e54_B 312 LTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMM 391 (435)
T ss_dssp EEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEE
T ss_pred EEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEE
Confidence 9999999999999999988877765543 234567888888777765 2357999999999998
Q ss_pred EEe-CCCCCCeeEE-EEeCCCCEEEEEECCCEEEEEecCCce
Q 003445 221 GSA-GPETSGVRCL-TFNPDGRTLLCGLHESLKVFSWEPIRC 260 (819)
Q Consensus 221 ~~~-~~~~~~I~sl-~fspdg~~Lasgs~d~I~Vwd~~~~~~ 260 (819)
..+ .+|...|.++ +|+|+|++|++|+++.|+||+++.++.
T Consensus 392 ~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 392 CQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQEART 433 (435)
T ss_dssp EEECCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC----
T ss_pred EEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcCee
Confidence 876 4677888887 699999999999988899999987764
No 99
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=283.78 Aligned_cols=245 Identities=18% Similarity=0.257 Sum_probs=207.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----------EEEEEcCCC------------CCeEEEEEecCC-
Q 003445 58 HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK-----------IVRTLTGHR------------SNCISVDFHPFG- 113 (819)
Q Consensus 58 h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~-----------~i~~l~~h~------------~~I~sl~fsp~g- 113 (819)
|.+.|.+++|+|++++|++|+.||.|++||+.+++ ....+.+|. ..|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 67899999999999999999999999999999877 578899998 889999999998
Q ss_pred -CEEEEEECCCcEEEEECCCCeEE---------------------------------------EE-EecCCCCeEEEEEc
Q 003445 114 -EFFASGSLDTNLKIWDIRKKGCI---------------------------------------HT-YKGHTRGVNAIRFT 152 (819)
Q Consensus 114 -~~Lasgs~Dg~I~IwDi~t~~~i---------------------------------------~~-~~~h~~~I~sl~fs 152 (819)
.+|++++.||.|++||+.++... .. ..+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 79999999999999998764432 12 35799999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCC-CeEEEE-------EecCCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCCCeE----
Q 003445 153 PDGRWVVSGGEDNTVKLWDLTA-GKLLHD-------FKCHEGQIQCIDFHPHE-FLLATGSADRTVKFWDLETFEL---- 219 (819)
Q Consensus 153 pdg~~L~sgs~Dg~I~IwDl~t-~~~i~~-------~~~h~~~I~sl~fspdg-~~Lasgs~Dg~I~iwDl~~~~~---- 219 (819)
|++++|++| .||.|++||+++ ++.+.. +..|...|.+++|+|++ .+|++|+.||.|++||+++++.
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 999999998 899999999994 444442 45789999999999998 9999999999999999999886
Q ss_pred EEEeCCCCC------------CeeEEEEeCCCCEEEEEECCCEEEEEecC-Cceeeeeecccccee--------------
Q 003445 220 IGSAGPETS------------GVRCLTFNPDGRTLLCGLHESLKVFSWEP-IRCHDAVDVGWSRLS-------------- 272 (819)
Q Consensus 220 l~~~~~~~~------------~I~sl~fspdg~~Lasgs~d~I~Vwd~~~-~~~~~~~~~~~s~i~-------------- 272 (819)
+..+..+.. .|.+++|+|+|++|++++.+.+++||+.. .++...+..+.....
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 345 (447)
T 3dw8_B 266 SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDK 345 (447)
T ss_dssp CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCC
T ss_pred eeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccc
Confidence 677777765 89999999999999999887799999987 777666655432211
Q ss_pred --EeEecCCCEEEEEEcCCeEEEEEecCCceee
Q 003445 273 --DLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 273 --~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~p 303 (819)
....+++++|++++.||.|++|++..++...
T Consensus 346 ~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 346 FECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp CCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred eEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence 2334789999999999999999999987653
No 100
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.6e-30 Score=289.77 Aligned_cols=263 Identities=16% Similarity=0.243 Sum_probs=220.6
Q ss_pred EEECCCCceEEEe-cCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC---Ce---EEEEEcCCCCCeEEEEEecCCC
Q 003445 43 LWAIGKPNAILSL-SGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEE---AK---IVRTLTGHRSNCISVDFHPFGE 114 (819)
Q Consensus 43 IWdl~~~~~i~~l-~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~s---~~---~i~~l~~h~~~I~sl~fsp~g~ 114 (819)
.|+ .+++.+..+ .+|.+.|++++|+| ++.+|++|+.||.|++||+.+ +. ....+ +|...|.+++|+|+++
T Consensus 47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~ 124 (437)
T 3gre_A 47 MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD 124 (437)
T ss_dssp GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS
T ss_pred ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC
Confidence 487 567888888 89999999999999 999999999999999999876 33 23333 4899999999999999
Q ss_pred EEEEEECCCcEEEEECC---CCeEEEEEec------------CCCCeEEEE--EcCCCCEEEEEECCCeEEEEECCCCeE
Q 003445 115 FFASGSLDTNLKIWDIR---KKGCIHTYKG------------HTRGVNAIR--FTPDGRWVVSGGEDNTVKLWDLTAGKL 177 (819)
Q Consensus 115 ~Lasgs~Dg~I~IwDi~---t~~~i~~~~~------------h~~~I~sl~--fspdg~~L~sgs~Dg~I~IwDl~t~~~ 177 (819)
+|++|+.||.|++||+. +++.+..+.. +...+.++. +++++.+|++|+.||.|++||+++++.
T Consensus 125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 204 (437)
T 3gre_A 125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER 204 (437)
T ss_dssp EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Confidence 99999999999999995 5544443332 455667776 567899999999999999999999999
Q ss_pred EEEEec--CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeC-CCCCCeeEEEEe----CCCCEEEEEECCC-
Q 003445 178 LHDFKC--HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG-PETSGVRCLTFN----PDGRTLLCGLHES- 249 (819)
Q Consensus 178 i~~~~~--h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~-~~~~~I~sl~fs----pdg~~Lasgs~d~- 249 (819)
+..+.. |.+.|++++|+|++.+|++|+.||.|++||+++++++..+. .+...|.+++|+ +++.+|++|+.++
T Consensus 205 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~ 284 (437)
T 3gre_A 205 LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF 284 (437)
T ss_dssp EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE
T ss_pred eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc
Confidence 999988 88999999999999999999999999999999999998876 677889999665 4688999998775
Q ss_pred EEEEEecCCceeeeeec--------------------------cccceeEeEecCCCEEEEEEcCCeEEEEEecCCceee
Q 003445 250 LKVFSWEPIRCHDAVDV--------------------------GWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 250 I~Vwd~~~~~~~~~~~~--------------------------~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~p 303 (819)
|++||+.+.++...+.. +...+..+.+.++++|++++.|+.|++|++..++...
T Consensus 285 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 285 LTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSK 364 (437)
T ss_dssp EEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred EEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccce
Confidence 99999998887665542 2233566667788999999999999999999877654
Q ss_pred eeec
Q 003445 304 YTIG 307 (819)
Q Consensus 304 ~~~~ 307 (819)
...+
T Consensus 365 ~~~~ 368 (437)
T 3gre_A 365 AVIS 368 (437)
T ss_dssp EEEC
T ss_pred EEec
Confidence 4433
No 101
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.1e-30 Score=312.08 Aligned_cols=250 Identities=19% Similarity=0.324 Sum_probs=219.3
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC--CCceEEEecCCCCCeEEEEEcCC--CCEEEEEECCCeEE
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG--KPNAILSLSGHTSGIDSVSFDSS--EVLVAAGAASGTIK 84 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~--~~~~i~~l~~h~~~V~~l~fspd--g~~Lasgs~DG~I~ 84 (819)
+..+.+|.+.|+|++|+| ++.+|++|+.||.|+|||+. ++..+..+.+|.+.|.+++|+++ +++|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 346789999999999999 66789999999999999997 55778889999999999999988 99999999999999
Q ss_pred EEECCCCe--EEEEEcCCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCC--eEEEEEecCCCCeEEEEEcC-----
Q 003445 85 LWDLEEAK--IVRTLTGHRSNCISVDFHPF--GEFFASGSLDTNLKIWDIRKK--GCIHTYKGHTRGVNAIRFTP----- 153 (819)
Q Consensus 85 IWDl~s~~--~i~~l~~h~~~I~sl~fsp~--g~~Lasgs~Dg~I~IwDi~t~--~~i~~~~~h~~~I~sl~fsp----- 153 (819)
+||+.+++ .+..+.+|...|.+++|+|+ +.+|++|+.||.|++||++++ .....+.+|...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999987 77888899999999999999 999999999999999999877 34456778999999999999
Q ss_pred --------CCCEEEEEECCCeEEEEECCCC----eEEEEEecCCCCeEEEEEeCC---CCEEEEEECCCeEEEEECCCCe
Q 003445 154 --------DGRWVVSGGEDNTVKLWDLTAG----KLLHDFKCHEGQIQCIDFHPH---EFLLATGSADRTVKFWDLETFE 218 (819)
Q Consensus 154 --------dg~~L~sgs~Dg~I~IwDl~t~----~~i~~~~~h~~~I~sl~fspd---g~~Lasgs~Dg~I~iwDl~~~~ 218 (819)
++.+|++|+.||.|++||++++ .....+.+|.+.|++++|+|+ +.+|++|+.||.|++||+.+++
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 5899999999999999999877 566778889999999999999 9999999999999999998864
Q ss_pred -----EEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCc
Q 003445 219 -----LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIR 259 (819)
Q Consensus 219 -----~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~ 259 (819)
.+.....+...|.+++|+|+|++|++|+.+ .|++|++....
T Consensus 241 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 333345678899999999999999998766 59999988643
No 102
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=4e-29 Score=275.82 Aligned_cols=282 Identities=19% Similarity=0.290 Sum_probs=210.7
Q ss_pred ccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCC---CCEEEEEECCCeEEEEECCC
Q 003445 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSS---EVLVAAGAASGTIKLWDLEE 90 (819)
Q Consensus 14 ~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspd---g~~Lasgs~DG~I~IWDl~s 90 (819)
+|...|.+++|+|+++.+|++++.||.|++||+.+++....+. +...+.++.|++. +.++++++.+|.|++||+.+
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 5999999999999788899999999999999999999888877 7889999999884 45999999999999999999
Q ss_pred CeEEEEEcCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCe-EEEEE---------------ecCCCCeEEEEEcC
Q 003445 91 AKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKG-CIHTY---------------KGHTRGVNAIRFTP 153 (819)
Q Consensus 91 ~~~i~~l~~h~~~I~sl~fsp~g~-~Lasgs~Dg~I~IwDi~t~~-~i~~~---------------~~h~~~I~sl~fsp 153 (819)
++.+..+.+|...|.+++|+|++. +|++|+.||.|++||++++. ++..+ ..|...|.+++|+|
T Consensus 176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 999999999999999999999998 59999999999999998765 44444 46888999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEecCC-----CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCC
Q 003445 154 DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE-----GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETS 228 (819)
Q Consensus 154 dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~-----~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~ 228 (819)
++++|++++.||.|++||+.+++....+..+. ..+........+..+++++.|+.|++||+.+++.+..+..|..
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 335 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK 335 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS
T ss_pred CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC
Confidence 99999999999999999999887655443221 1122222233455677777899999999999999999999999
Q ss_pred CeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEEec
Q 003445 229 GVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 229 ~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld 297 (819)
.|.+++|+|++++|++++.+ .|++|++++.+........... ..+.......+..+..++.+++|+..
T Consensus 336 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 336 TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK-SQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEECC----------------------------------------
T ss_pred eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec-cccccccceeecccCccCceeecCCc
Confidence 99999999999999999876 5999999988766543322211 22333455666778889999999754
No 103
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.2e-29 Score=274.11 Aligned_cols=265 Identities=11% Similarity=0.119 Sum_probs=213.8
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC---------CCeEEEEEc
Q 003445 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE---------EAKIVRTLT 98 (819)
Q Consensus 28 ~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~---------s~~~i~~l~ 98 (819)
++.+|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +++.+..+.
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence 56789999999999999999999888877 467888899988 8999999999999665 555455544
Q ss_pred -CCCCCeEEEEEec--CCCEEEEEECCCcEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003445 99 -GHRSNCISVDFHP--FGEFFASGSLDTNLKIWDIRKKGCIHTYK-GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA 174 (819)
Q Consensus 99 -~h~~~I~sl~fsp--~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~-~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t 174 (819)
+|...|.+++|+| ++++|++++.||.|++||+++++++..+. .|...+.+++|+|+|.+|++|+.||.|++||+++
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~ 201 (343)
T 3lrv_A 122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS 201 (343)
T ss_dssp CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC
T ss_pred cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 6778999999999 99999999999999999999999877664 3555899999999999999999999999999999
Q ss_pred CeEE-EEEec-CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC---CCCCee--EEEEeCCCCEEEEEEC
Q 003445 175 GKLL-HDFKC-HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP---ETSGVR--CLTFNPDGRTLLCGLH 247 (819)
Q Consensus 175 ~~~i-~~~~~-h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~---~~~~I~--sl~fspdg~~Lasgs~ 247 (819)
++.+ ..+.. |.+.|++++|+|++.+|++++ |+.|++||+++++.+..+.. +...+. +++|+|+|++|++++.
T Consensus 202 ~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~ 280 (343)
T 3lrv_A 202 PDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN 280 (343)
T ss_dssp TTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEET
T ss_pred CCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecC
Confidence 9887 78887 999999999999999999999 55999999999876655443 333343 6999999999999775
Q ss_pred --CCEEEEEecCCceeeeeeccccceeEeEe-c---CCCEEEEEEcCCeEEEEEecCCcee
Q 003445 248 --ESLKVFSWEPIRCHDAVDVGWSRLSDLNV-H---EGKLLGCSYNQSCVGVWVVDISRIE 302 (819)
Q Consensus 248 --d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~---dg~lLa~~~~Dg~V~IW~ld~~~~~ 302 (819)
+.++||+++.....-.. ..+..+.+ + +...+++++.|+.+.+|-.......
T Consensus 281 ~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~ 337 (343)
T 3lrv_A 281 ESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSFN 337 (343)
T ss_dssp TTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECSSEEE
T ss_pred CCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecCCeEe
Confidence 46999999765422111 12222222 2 6788999999999999876655443
No 104
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.5e-30 Score=284.64 Aligned_cols=242 Identities=20% Similarity=0.266 Sum_probs=204.6
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC
Q 003445 55 LSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA--KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK 132 (819)
Q Consensus 55 l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~--~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t 132 (819)
+..+.++|++++|+|++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 3346779999999999999999999999999999988 77888999999999999999999999999999999999998
Q ss_pred Ce---EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe---EEEEEec-CCCCeEEEEEeCCCCEEEEEEC
Q 003445 133 KG---CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK---LLHDFKC-HEGQIQCIDFHPHEFLLATGSA 205 (819)
Q Consensus 133 ~~---~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~---~i~~~~~-h~~~I~sl~fspdg~~Lasgs~ 205 (819)
+. ....+..|...|.+++|+|++++|++++.|+.|++||+++++ ....+.. |...|.+++|+|++.+|++++.
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 166 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA 166 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence 77 677788899999999999999999999999999999999887 3677777 9999999999999999999999
Q ss_pred CCeEEEEECC------------------CCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCce----ee
Q 003445 206 DRTVKFWDLE------------------TFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRC----HD 262 (819)
Q Consensus 206 Dg~I~iwDl~------------------~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~----~~ 262 (819)
|+.|++||+. .++++..+ .|...|.+++|+|+|++|++++.+ .|++|++...++ ..
T Consensus 167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 245 (377)
T 3dwl_C 167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALI 245 (377)
T ss_dssp SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECC
T ss_pred CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeE
Confidence 9999999985 35566667 889999999999999999999877 599999999887 66
Q ss_pred eeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEecC
Q 003445 263 AVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 263 ~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~ 298 (819)
.+..+...+..+.+ +++++|++++.++.+ +|+...
T Consensus 246 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 246 TVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp CEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred eecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 77777777777766 688888888666555 776653
No 105
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=4e-28 Score=272.16 Aligned_cols=285 Identities=13% Similarity=0.158 Sum_probs=241.9
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEE-----EecCCCCCeEEEEEcCCCCEEEEEECCCe
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL-----SLSGHTSGIDSVSFDSSEVLVAAGAASGT 82 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~-----~l~~h~~~V~~l~fspdg~~Lasgs~DG~ 82 (819)
.+..+..+ ..+.+++|+| ++.++++++.++.|++||+.+++... .+.+|...|.+++|++++.++++++.|+.
T Consensus 115 ~~~~~~~~-~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 115 FISRFKTG-FQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp EEEEEECS-SCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred EEEEEcCC-CCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 34445544 4566999999 88889999999999999999998887 34578999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 003445 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSG 161 (819)
Q Consensus 83 I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs-~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sg 161 (819)
|++||+.+++.+..+..|...+.+++|+|+++++++++ .|+.|++||+++++.+..+..+ ..+.+++|+|+|++|+++
T Consensus 193 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 193 VHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEE
T ss_pred EEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEE
Confidence 99999999999999999999999999999999885554 7999999999999988887754 459999999999999988
Q ss_pred E--------CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCE-EEEEECCCeEEEEECCCCeEEEEeCCCCCCeeE
Q 003445 162 G--------EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFL-LATGSADRTVKFWDLETFELIGSAGPETSGVRC 232 (819)
Q Consensus 162 s--------~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~-Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~s 232 (819)
+ .||.|++||+.+++.+..+. +...+.+++|+|++.. +++++.|+.|++||+.+++.+..+. +...+.+
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~ 349 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNT 349 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEE
T ss_pred ECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCe
Confidence 8 48899999999998877664 5568899999999975 5666889999999999999887775 5677999
Q ss_pred EEEeCCCCEEEEEECC----------------CEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEc-CCeEEEE
Q 003445 233 LTFNPDGRTLLCGLHE----------------SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYN-QSCVGVW 294 (819)
Q Consensus 233 l~fspdg~~Lasgs~d----------------~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~-Dg~V~IW 294 (819)
++|+|+|++|+++..+ .+.+||..+.+....+..+. .+..+.+ ++|++|++++. |+.|++|
T Consensus 350 ~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~ 428 (433)
T 3bws_A 350 IALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN-QPTGLDVSPDNRYLVISDFLDHQIRVY 428 (433)
T ss_dssp EEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS-SEEEEEECTTSCEEEEEETTTTEEEEE
T ss_pred EEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC-CCceEEEcCCCCEEEEEECCCCeEEEE
Confidence 9999999999887653 69999999888877776643 3455554 78899888775 9999999
Q ss_pred EecC
Q 003445 295 VVDI 298 (819)
Q Consensus 295 ~ld~ 298 (819)
+++.
T Consensus 429 ~~~~ 432 (433)
T 3bws_A 429 RRDG 432 (433)
T ss_dssp EETT
T ss_pred EecC
Confidence 9873
No 106
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=4.1e-29 Score=277.05 Aligned_cols=243 Identities=12% Similarity=0.175 Sum_probs=200.7
Q ss_pred EEeccCCCEEEEEEeeCCCcEEEEE-----------eCCCeEEEEECCCCceEE----Ee-----cCCCCCeEEEEEcCC
Q 003445 11 EFVAHSSTVNCLKIGRKSSRVLVTG-----------GEDHKVNLWAIGKPNAIL----SL-----SGHTSGIDSVSFDSS 70 (819)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~~Latg-----------s~Dg~V~IWdl~~~~~i~----~l-----~~h~~~V~~l~fspd 70 (819)
.|.+|...|.|++++. .++++| +.|+.+++|++....... .. ..+...+.+++|+||
T Consensus 68 ~l~~~~~~v~s~~~~~---~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD 144 (365)
T 4h5i_A 68 ALEDNDDSPTAIDASK---GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE 144 (365)
T ss_dssp ECCTTSCCCCEEEEET---TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred EccCCCCceEEEEeCC---CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence 4567888999998864 355555 357889999986543221 11 134556899999999
Q ss_pred CCEEEEEE--CCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE--EecCCCCe
Q 003445 71 EVLVAAGA--ASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT--YKGHTRGV 146 (819)
Q Consensus 71 g~~Lasgs--~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~--~~~h~~~I 146 (819)
|+++++++ .|++|+|||+.+++.+..+. |...|.+++|+|+|++|++++. +.+++|+..++..+.. ...|...|
T Consensus 145 g~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v 222 (365)
T 4h5i_A 145 GTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSL 222 (365)
T ss_dssp SSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEE
T ss_pred CCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCE
Confidence 99887554 68999999999999998886 7788999999999999999985 4577777777766543 35688889
Q ss_pred EEEEEcCCCCEEEEEECCC----eEEEEECCCCeE----EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe
Q 003445 147 NAIRFTPDGRWVVSGGEDN----TVKLWDLTAGKL----LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE 218 (819)
Q Consensus 147 ~sl~fspdg~~L~sgs~Dg----~I~IwDl~t~~~----i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~ 218 (819)
.+++|+|++.++++++.|+ .+++||+..+.. ...+.+|...|++++|+|+|++||+|+.|++|+|||+++++
T Consensus 223 ~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~ 302 (365)
T 4h5i_A 223 SKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS 302 (365)
T ss_dssp EEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred EEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc
Confidence 9999999999999999887 688999877653 34567789999999999999999999999999999999999
Q ss_pred EEEEe-CCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCC
Q 003445 219 LIGSA-GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPI 258 (819)
Q Consensus 219 ~l~~~-~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~ 258 (819)
++..+ .+|...|++++|+|||++|++|+.| .|+||++...
T Consensus 303 ~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 303 MSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99875 7899999999999999999999887 5999999643
No 107
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.5e-28 Score=271.15 Aligned_cols=280 Identities=13% Similarity=0.120 Sum_probs=216.6
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEE-EEEECCCeEEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLV-AAGAASGTIKLW 86 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~L-asgs~DG~I~IW 86 (819)
.+..+.+|.+.|+|++|+| ++.+|++|+.++ ++||++..++....... ..+..++|.++++++ ++|+.|++|++|
T Consensus 11 ~~~~~~~h~~~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQ-DQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp --------CCCCCEEEECT-TSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred CccccccCCCceEEEEECC-CCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence 4557789999999999999 667899888775 78999987776655443 358889999888877 567778999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEEEE--EEC
Q 003445 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTPDGRWVVS--GGE 163 (819)
Q Consensus 87 Dl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~-~~i~~~~~h~~~I~sl~fspdg~~L~s--gs~ 163 (819)
|+.+++.+..+. +...|.+++|+++. ++++ .|+.|++||+.++ +.+..+.. ....+++++ .++++ |+.
T Consensus 87 d~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~ 157 (355)
T 3vu4_A 87 DDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFN 157 (355)
T ss_dssp ETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSC
T ss_pred ECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCc
Confidence 999999999887 67799999998753 4444 4789999999988 66655554 445566776 56666 578
Q ss_pred CCeEEEEECCCCe----------------EEEEEecCCCCeEEEEEeCCCCEEEEEECCCe-EEEEECCCCeEEEEeC-C
Q 003445 164 DNTVKLWDLTAGK----------------LLHDFKCHEGQIQCIDFHPHEFLLATGSADRT-VKFWDLETFELIGSAG-P 225 (819)
Q Consensus 164 Dg~I~IwDl~t~~----------------~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~-I~iwDl~~~~~l~~~~-~ 225 (819)
||.|++||+.+++ .+..+.+|.+.|++++|+|+|.+|++|+.||+ |++||+++++++..+. +
T Consensus 158 ~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g 237 (355)
T 3vu4_A 158 LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG 237 (355)
T ss_dssp TTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT
T ss_pred CcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence 9999999999865 26778899999999999999999999999998 9999999999999987 4
Q ss_pred -CCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeee-----------eecccc------------ceeEeEe-cCC
Q 003445 226 -ETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDA-----------VDVGWS------------RLSDLNV-HEG 279 (819)
Q Consensus 226 -~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~-----------~~~~~s------------~i~~l~~-~dg 279 (819)
|...|.+++|+|+|++|++++.+ .+++|++........ +...|. ....+.+ +++
T Consensus 238 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~ 317 (355)
T 3vu4_A 238 LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES 317 (355)
T ss_dssp TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCC
Confidence 89999999999999999999887 599999976432110 111111 1123333 688
Q ss_pred CEEEEEEcCCeEEEEEecCCc
Q 003445 280 KLLGCSYNQSCVGVWVVDISR 300 (819)
Q Consensus 280 ~lLa~~~~Dg~V~IW~ld~~~ 300 (819)
+.++++..||.+++|++..+.
T Consensus 318 ~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 318 SLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EEEEEETTTTEEEEEEEEEET
T ss_pred CEEEEEeCCCeEEEEEEEcCC
Confidence 899999999999999987544
No 108
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.7e-28 Score=277.17 Aligned_cols=242 Identities=26% Similarity=0.536 Sum_probs=216.6
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (819)
...+..+.+|.+.|.+++| ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|++ .++++|+.||.|++
T Consensus 163 ~~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~v 237 (435)
T 1p22_A 163 LECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAV 237 (435)
T ss_dssp CCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEE
T ss_pred CeEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEE
Confidence 3456788899999999999 456899999999999999999999999999999999999974 59999999999999
Q ss_pred EECCCCeEE---EEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 003445 86 WDLEEAKIV---RTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG 162 (819)
Q Consensus 86 WDl~s~~~i---~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs 162 (819)
||+.++... ..+.+|...|.+++| ++++|++|+.||.|++||+++++.+..+.+|...|.++.|+ ++++++|+
T Consensus 238 wd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~ 313 (435)
T 1p22_A 238 WDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS 313 (435)
T ss_dssp EECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE
T ss_pred EeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEe
Confidence 999887654 678899999999999 68899999999999999999999999999999999999995 78999999
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe---------EEEEeCCCCCCeeEE
Q 003445 163 EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE---------LIGSAGPETSGVRCL 233 (819)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~---------~l~~~~~~~~~I~sl 233 (819)
.||.|++||+++++.+..+.+|...|.+++| ++.+|++|+.||.|++||+.++. .+..+..|...|.++
T Consensus 314 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 391 (435)
T 1p22_A 314 SDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 391 (435)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred CCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEE
Confidence 9999999999999999999999999999998 78899999999999999997766 888899999999999
Q ss_pred EEeCCCCEEEEEECC-CEEEEEecCCce
Q 003445 234 TFNPDGRTLLCGLHE-SLKVFSWEPIRC 260 (819)
Q Consensus 234 ~fspdg~~Lasgs~d-~I~Vwd~~~~~~ 260 (819)
+| ++.+|++++.| .|++|++.....
T Consensus 392 ~~--~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 392 QF--DEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp EE--CSSCEEECCSSSEEEEEC------
T ss_pred Ee--CCCEEEEEeCCCEEEEEECCCCCC
Confidence 99 77888888766 599999977544
No 109
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1.7e-27 Score=254.22 Aligned_cols=246 Identities=23% Similarity=0.435 Sum_probs=215.0
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (819)
++..+.+|...|+|++|+| ++++|++|+.||.|++||+.+++.+..+.+|...+.++.+ ++.++++|+.++.+++|+
T Consensus 59 ~~~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~ 135 (318)
T 4ggc_A 59 QLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHD 135 (318)
T ss_dssp EEEECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEE
T ss_pred EEEEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeee
Confidence 3445567888999999999 6789999999999999999999999999999998887665 567999999999999999
Q ss_pred CCCC-eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe----EEEEEecCCCCeEEEEEcCCCCEE---E
Q 003445 88 LEEA-KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG----CIHTYKGHTRGVNAIRFTPDGRWV---V 159 (819)
Q Consensus 88 l~s~-~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~----~i~~~~~h~~~I~sl~fspdg~~L---~ 159 (819)
.... ..+..+.+|...+..+.|.+++++|++++.||.|++||+++++ .......|...|.++.++|++..+ +
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 215 (318)
T 4ggc_A 136 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG 215 (318)
T ss_dssp TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEE
T ss_pred cCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEE
Confidence 9865 5667888999999999999999999999999999999998765 344556788899999999976533 3
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE--CCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeC
Q 003445 160 SGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS--ADRTVKFWDLETFELIGSAGPETSGVRCLTFNP 237 (819)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs--~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fsp 237 (819)
+++.++.|++||........... +...+..+.|+|++..+++++ .|+.|++||+++++++..+.+|...|++++|+|
T Consensus 216 ~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp 294 (318)
T 4ggc_A 216 GGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP 294 (318)
T ss_dssp ECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred ecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence 56678999999999888776655 677899999999999888765 799999999999999999999999999999999
Q ss_pred CCCEEEEEECCC-EEEEEecC
Q 003445 238 DGRTLLCGLHES-LKVFSWEP 257 (819)
Q Consensus 238 dg~~Lasgs~d~-I~Vwd~~~ 257 (819)
+|++|++|+.|+ |+||++..
T Consensus 295 dg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 295 DGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp TSSCEEEEETTTEEEEECCSC
T ss_pred CCCEEEEEecCCeEEEEECCC
Confidence 999999998874 99999754
No 110
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=2.6e-28 Score=275.90 Aligned_cols=284 Identities=19% Similarity=0.308 Sum_probs=233.5
Q ss_pred CCEEEEEEeeCCC---------cEEEEEeC----CCeEEEEECC--------------------------CCce-EEEec
Q 003445 17 STVNCLKIGRKSS---------RVLVTGGE----DHKVNLWAIG--------------------------KPNA-ILSLS 56 (819)
Q Consensus 17 ~~V~~lafsp~~~---------~~Latgs~----Dg~V~IWdl~--------------------------~~~~-i~~l~ 56 (819)
-+..|+.|.|+.. .++++|+. ...|.++++. +++. .....
T Consensus 46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 125 (430)
T 2xyi_A 46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI 125 (430)
T ss_dssp SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEE
T ss_pred CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEE
Confidence 4678889988432 46777754 3467777542 1111 23445
Q ss_pred CCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCC----------CeEEEEEcCCCCCeEEEEEecCCC-EEEEEECCCc
Q 003445 57 GHTSGIDSVSFDSS-EVLVAAGAASGTIKLWDLEE----------AKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTN 124 (819)
Q Consensus 57 ~h~~~V~~l~fspd-g~~Lasgs~DG~I~IWDl~s----------~~~i~~l~~h~~~I~sl~fsp~g~-~Lasgs~Dg~ 124 (819)
.|.+.|++++|+|+ +.+|++++.+|.|++||+.. .+.+..+.+|...|.+++|+|++. +|++|+.||.
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 79999999999997 68999999999999999986 577788899999999999999998 9999999999
Q ss_pred EEEEECCCCeE-------EEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC---eEEEEEecCCCCeEEEEE
Q 003445 125 LKIWDIRKKGC-------IHTYKGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAG---KLLHDFKCHEGQIQCIDF 193 (819)
Q Consensus 125 I~IwDi~t~~~-------i~~~~~h~~~I~sl~fsp-dg~~L~sgs~Dg~I~IwDl~t~---~~i~~~~~h~~~I~sl~f 193 (819)
|++||+..+.. ...+.+|...|.+++|+| ++.+|++++.||.|++||++++ +.+..+..|...|++++|
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 285 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEE
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEe
Confidence 99999987321 456778999999999999 7889999999999999999987 577778889999999999
Q ss_pred eCCCC-EEEEEECCCeEEEEECCC-CeEEEEeCCCCCCeeEEEEeCCCC-EEEEEECC-CEEEEEecCC-----------
Q 003445 194 HPHEF-LLATGSADRTVKFWDLET-FELIGSAGPETSGVRCLTFNPDGR-TLLCGLHE-SLKVFSWEPI----------- 258 (819)
Q Consensus 194 spdg~-~Lasgs~Dg~I~iwDl~~-~~~l~~~~~~~~~I~sl~fspdg~-~Lasgs~d-~I~Vwd~~~~----------- 258 (819)
+|++. +|++|+.||.|++||+++ ...+..+..|...|.+++|+|+++ +|++++.+ .|+||++...
T Consensus 286 ~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 365 (430)
T 2xyi_A 286 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 365 (430)
T ss_dssp CSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHH
T ss_pred CCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccccc
Confidence 99986 799999999999999998 566778888999999999999985 57777655 6999999872
Q ss_pred ---ceeeeeeccccceeEeEe-cCCC-EEEEEEcCCeEEEEEecCCc
Q 003445 259 ---RCHDAVDVGWSRLSDLNV-HEGK-LLGCSYNQSCVGVWVVDISR 300 (819)
Q Consensus 259 ---~~~~~~~~~~s~i~~l~~-~dg~-lLa~~~~Dg~V~IW~ld~~~ 300 (819)
+.......+...+..+.+ +++. ++++++.||.|+||+++..-
T Consensus 366 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 366 GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp CCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred CCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 344445556667778777 5667 89999999999999987543
No 111
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-29 Score=295.23 Aligned_cols=242 Identities=8% Similarity=0.033 Sum_probs=204.1
Q ss_pred cCCCEEEEEEeeCC-C-------cEEEEE-------------------eCCCeEEEEECCCCceE----EEecCCCCCeE
Q 003445 15 HSSTVNCLKIGRKS-S-------RVLVTG-------------------GEDHKVNLWAIGKPNAI----LSLSGHTSGID 63 (819)
Q Consensus 15 H~~~V~~lafsp~~-~-------~~Latg-------------------s~Dg~V~IWdl~~~~~i----~~l~~h~~~V~ 63 (819)
+.+.|.+|+|+|++ + ++||+| +.|++|+||++.+++.. ..+.+|.+.|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 68899999999954 1 566664 47789999999776542 34667889999
Q ss_pred EEEEcCC------CCEEEEEECCCeEEEEECCCCe-----------EEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEE
Q 003445 64 SVSFDSS------EVLVAAGAASGTIKLWDLEEAK-----------IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLK 126 (819)
Q Consensus 64 ~l~fspd------g~~Lasgs~DG~I~IWDl~s~~-----------~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~ 126 (819)
+++|+|+ +.+|++++.||+|++||+..++ ....+.+|...|.+++|+++ ..|++|+.||+|+
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~ 290 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVA 290 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEE
Confidence 9999996 5799999999999999997653 12467889999999999985 5899999999999
Q ss_pred EEECCCC-eEEEEEecCCCCeEEE--EEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEecCCC--CeEEEEEeCCCCEE
Q 003445 127 IWDIRKK-GCIHTYKGHTRGVNAI--RFTPDG-RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEG--QIQCIDFHPHEFLL 200 (819)
Q Consensus 127 IwDi~t~-~~i~~~~~h~~~I~sl--~fspdg-~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~--~I~sl~fspdg~~L 200 (819)
+||++++ .+...+.+|...|.++ .|+++| .+|++|+.|++|+|||+++++++..+.+|.. .|.+++|+|++..|
T Consensus 291 lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l 370 (524)
T 2j04_B 291 EFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSY 370 (524)
T ss_dssp EEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEE
T ss_pred EEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeE
Confidence 9999976 3456688999999999 578888 8999999999999999998887666666643 58899999999999
Q ss_pred EEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecC
Q 003445 201 ATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP 257 (819)
Q Consensus 201 asgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~ 257 (819)
++++.|++|++||++++.++..+.+|...|++++|+|+|++|++|+.| .+++|+...
T Consensus 371 ~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 371 IYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred EEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 999999999999999998877888899999999999999999999877 599998754
No 112
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=6.8e-27 Score=258.44 Aligned_cols=271 Identities=13% Similarity=0.158 Sum_probs=227.8
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEEEcCCCCCeEEE
Q 003445 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLV-AAGAASGTIKLWDLEEAKIVRTLTGHRSNCISV 107 (819)
Q Consensus 29 ~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~L-asgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl 107 (819)
+.++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+. .+.++
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 3578889999999999999999999888765 58999999999976 566689999999999999998888655 89999
Q ss_pred EEecCCCEEEEEE-CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEEEecCC
Q 003445 108 DFHPFGEFFASGS-LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWV-VSGGEDNTVKLWDLTAGKLLHDFKCHE 185 (819)
Q Consensus 108 ~fsp~g~~Lasgs-~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L-~sgs~Dg~I~IwDl~t~~~i~~~~~h~ 185 (819)
+|+|++++|++++ .++.|++||+.+++.+..+..+ ..+.+++|+|+|++| ++++.++.|++||+.+++.+..+..+
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~- 157 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG- 157 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-
Confidence 9999999876554 6799999999999998888754 468999999999987 67778999999999999998888754
Q ss_pred CCeEEEEEeCCCCEE-EEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE----CCCEEEEEecCCce
Q 003445 186 GQIQCIDFHPHEFLL-ATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL----HESLKVFSWEPIRC 260 (819)
Q Consensus 186 ~~I~sl~fspdg~~L-asgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs----~d~I~Vwd~~~~~~ 260 (819)
..+.+++|+|++.+| ++++.++.|++||+++++.+..+.. ...+.+++|+|+|++|++++ ++.+++||..+.+.
T Consensus 158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE
Confidence 567999999999877 5677889999999999988877754 45789999999999999876 34699999999888
Q ss_pred eeeeeccccceeEeEecCCCEE-EEEEcCCeEEEEEecCCceeee
Q 003445 261 HDAVDVGWSRLSDLNVHEGKLL-GCSYNQSCVGVWVVDISRIEPY 304 (819)
Q Consensus 261 ~~~~~~~~s~i~~l~~~dg~lL-a~~~~Dg~V~IW~ld~~~~~p~ 304 (819)
...+..+.........++++.+ +++..|+.|++|++..++....
T Consensus 237 ~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~ 281 (391)
T 1l0q_A 237 TARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITAT 281 (391)
T ss_dssp EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEE
Confidence 8777766554333334778776 5667899999999998776543
No 113
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.9e-28 Score=274.93 Aligned_cols=245 Identities=16% Similarity=0.165 Sum_probs=209.7
Q ss_pred EEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC--CCceEEEec--CCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG--KPNAILSLS--GHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~--~~~~i~~l~--~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
...+|.+.|++++|+|++..++++|+.||.|+|||+. +++.+..+. .|...|.+++|+|++++|++|+.+|.|++|
T Consensus 97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 3457888999999999554445999999999999998 888888876 577899999999999999999999999999
Q ss_pred ECCCCeEEE----EEcCCCCCeEEEEEecC---CCEEEEEECCCcEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEE
Q 003445 87 DLEEAKIVR----TLTGHRSNCISVDFHPF---GEFFASGSLDTNLKIWDIRKKGCIHT-YKGHTRGVNAIRFTPDGRWV 158 (819)
Q Consensus 87 Dl~s~~~i~----~l~~h~~~I~sl~fsp~---g~~Lasgs~Dg~I~IwDi~t~~~i~~-~~~h~~~I~sl~fspdg~~L 158 (819)
++.+++... .+.+|...|.+++|+|+ +++|++|+.|+.|++||++++..+.. +.+|...|.+++|+ ++++|
T Consensus 177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l 255 (450)
T 2vdu_B 177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLL 255 (450)
T ss_dssp ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEE
T ss_pred ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEE
Confidence 998876543 67789999999999999 99999999999999999999988877 55899999999999 99999
Q ss_pred EEEECCCeEEEEECCCCeEEEEEec-------------------------CCCCeEEEEEeCCCCEEEEEE-CCCeEEEE
Q 003445 159 VSGGEDNTVKLWDLTAGKLLHDFKC-------------------------HEGQIQCIDFHPHEFLLATGS-ADRTVKFW 212 (819)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~i~~~~~-------------------------h~~~I~sl~fspdg~~Lasgs-~Dg~I~iw 212 (819)
++++.|+.|++||+++++++..+.. ....|.+++|+|++.+|++++ .|+.|++|
T Consensus 256 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw 335 (450)
T 2vdu_B 256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIIL 335 (450)
T ss_dssp EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 9999999999999999998888763 235689999999999999999 89999999
Q ss_pred EC--CCC---eEEEEeCCCCCCeeEEEEeCCCCEEEEEEC-------CCEEEEEecC
Q 003445 213 DL--ETF---ELIGSAGPETSGVRCLTFNPDGRTLLCGLH-------ESLKVFSWEP 257 (819)
Q Consensus 213 Dl--~~~---~~l~~~~~~~~~I~sl~fspdg~~Lasgs~-------d~I~Vwd~~~ 257 (819)
|+ ..+ +.+..+..+ ..|.+++|+|++.++++++. +.|.+|.++.
T Consensus 336 ~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 336 EMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 99 555 677777777 88999999996544444332 2378888764
No 114
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=5.4e-29 Score=278.52 Aligned_cols=229 Identities=17% Similarity=0.207 Sum_probs=181.3
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEE-----EecCCCCCeEEEEEcC--------CCCEEEEEECCCeEEEEECCCCeEE
Q 003445 28 SSRVLVTGGEDHKVNLWAIGKPNAIL-----SLSGHTSGIDSVSFDS--------SEVLVAAGAASGTIKLWDLEEAKIV 94 (819)
Q Consensus 28 ~~~~Latgs~Dg~V~IWdl~~~~~i~-----~l~~h~~~V~~l~fsp--------dg~~Lasgs~DG~I~IWDl~s~~~i 94 (819)
++.+|++|+.|++|+|||...+.... .+.+|.+.|++++|+| ++++|++|+.|++|+|||+.++..+
T Consensus 100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~ 179 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI 179 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee
Confidence 45689999999999999998776543 3578999999999987 7899999999999999999999888
Q ss_pred EEEcCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCeEEEEE-------------------------ecCCCCeEE
Q 003445 95 RTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTY-------------------------KGHTRGVNA 148 (819)
Q Consensus 95 ~~l~~h~~~I~sl~fsp~g~-~Lasgs~Dg~I~IwDi~t~~~i~~~-------------------------~~h~~~I~s 148 (819)
..+.+|...+.+++|+|++. +|++|+.||+|++||+++++..... .+|...+.+
T Consensus 180 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~ 259 (393)
T 4gq1_A 180 LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLAN 259 (393)
T ss_dssp EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSE
T ss_pred eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccccee
Confidence 88888999999999999875 7999999999999999887643322 357778889
Q ss_pred EEEc-CCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEE------------------EeC--CCCEEEEEECCC
Q 003445 149 IRFT-PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCID------------------FHP--HEFLLATGSADR 207 (819)
Q Consensus 149 l~fs-pdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~------------------fsp--dg~~Lasgs~Dg 207 (819)
+.|+ ++|+.|++++.|+.+++||+..++....+..|...+..+. |+| ++.++++|+.||
T Consensus 260 v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg 339 (393)
T 4gq1_A 260 VRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHG 339 (393)
T ss_dssp EEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTT
T ss_pred eeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCC
Confidence 9987 7999999999999999999998877666655554444333 333 345778888999
Q ss_pred eEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEec
Q 003445 208 TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (819)
Q Consensus 208 ~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (819)
.|++||+.+++.+.....|..+|.+++|+|||++|++++++++.+|.+.
T Consensus 340 ~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 340 LIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp EEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred EEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 9999999999888888888899999999999999999999999888764
No 115
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=3.6e-28 Score=262.61 Aligned_cols=234 Identities=14% Similarity=0.199 Sum_probs=210.0
Q ss_pred eEEEEeccCCCEEEEEEeeCCCc-EEEEEeCCCeEEEEEC-CCCceEEEecC--CCCCeEEEEEcCCCCEEEEEECCCeE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSR-VLVTGGEDHKVNLWAI-GKPNAILSLSG--HTSGIDSVSFDSSEVLVAAGAASGTI 83 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~-~Latgs~Dg~V~IWdl-~~~~~i~~l~~--h~~~V~~l~fspdg~~Lasgs~DG~I 83 (819)
.+..+.+|...|++++|+| ++. +|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| +.+|++++.||.|
T Consensus 48 ~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i 124 (342)
T 1yfq_A 48 DLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLI 124 (342)
T ss_dssp EEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEE
T ss_pred cceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeE
Confidence 3566779999999999999 577 8999999999999999 76654 77888 999999999999 9999999999999
Q ss_pred EEEECCC---------CeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-Ce--EEEEEecCCCCeEEEEE
Q 003445 84 KLWDLEE---------AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK-KG--CIHTYKGHTRGVNAIRF 151 (819)
Q Consensus 84 ~IWDl~s---------~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t-~~--~i~~~~~h~~~I~sl~f 151 (819)
++||+.+ ++.+..+. |...|.+++|+|++ +++++.|+.|++||+++ +. .......|...+.+++|
T Consensus 125 ~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~ 201 (342)
T 1yfq_A 125 EVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL 201 (342)
T ss_dssp EEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE
T ss_pred EEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEE
Confidence 9999987 66666666 88999999999877 99999999999999998 44 33445568889999999
Q ss_pred cC-CCCEEEEEECCCeEEEEECCCC------eEEEEEecCCC---------CeEEEEEeCCCCEEEEEECCCeEEEEECC
Q 003445 152 TP-DGRWVVSGGEDNTVKLWDLTAG------KLLHDFKCHEG---------QIQCIDFHPHEFLLATGSADRTVKFWDLE 215 (819)
Q Consensus 152 sp-dg~~L~sgs~Dg~I~IwDl~t~------~~i~~~~~h~~---------~I~sl~fspdg~~Lasgs~Dg~I~iwDl~ 215 (819)
+| ++++|++++.||.|++||++.. +....+..|.. .|.+++|+|++.+|++|+.||.|++||+.
T Consensus 202 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp CSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred CCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence 99 9999999999999999999887 77888888765 99999999999999999999999999999
Q ss_pred CCeEEEEeCCC-CCCeeEEEEeCCCCEEEEEECCC
Q 003445 216 TFELIGSAGPE-TSGVRCLTFNPDGRTLLCGLHES 249 (819)
Q Consensus 216 ~~~~l~~~~~~-~~~I~sl~fspdg~~Lasgs~d~ 249 (819)
+++.+..+..| ...|.+++ |+|++|++++.|+
T Consensus 282 ~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 282 TRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp TTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred cHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence 99999999998 99999999 9999999988776
No 116
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.3e-29 Score=285.93 Aligned_cols=260 Identities=11% Similarity=0.079 Sum_probs=214.6
Q ss_pred ccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003445 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI 93 (819)
Q Consensus 14 ~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~ 93 (819)
.-...|.+++|+| +|+++|+++.|++|+ |...++. +.+|...|.+++|+|+| .++.+.+|+.+...
T Consensus 13 ~~~~~v~sv~~Sp-DG~~iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~- 78 (588)
T 2j04_A 13 EFEDWKNNLTWAR-DGTLYLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPLE-------FENKLDFELAQQNG- 78 (588)
T ss_dssp CCSSSSCCEEECT-TSCEEEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-
T ss_pred HhhccEEEEEECC-CCCEEEEEcCCceee--cccccce---ecCCCccEEEEEECCCC-------CcceEEEEeCCCce-
Confidence 3457899999999 788999999999999 7555554 47999999999999998 46655555543222
Q ss_pred EEEEc-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCC-----CeEEEEEcCCCCEEEEEECCCeE
Q 003445 94 VRTLT-GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTR-----GVNAIRFTPDGRWVVSGGEDNTV 167 (819)
Q Consensus 94 i~~l~-~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~-----~I~sl~fspdg~~L~sgs~Dg~I 167 (819)
.+. .|...|.+++|+|+|.+||+++.||.|++||... ++..+. |.. .+.+++|+|||++|++|+.||+|
T Consensus 79 --~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtV 153 (588)
T 2j04_A 79 --LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGEL 153 (588)
T ss_dssp --SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred --EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence 233 4678899999999999999999999999999544 666677 665 49999999999999999999999
Q ss_pred EEEECCCCe-------EEEEE----ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeE---EEEe-CCCCCCeeE
Q 003445 168 KLWDLTAGK-------LLHDF----KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL---IGSA-GPETSGVRC 232 (819)
Q Consensus 168 ~IwDl~t~~-------~i~~~----~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~---l~~~-~~~~~~I~s 232 (819)
++||+.+++ .+..+ .+|...|.+++|+|+| +++++.|++|++||+..+.. ...+ .+|...|.+
T Consensus 154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s 231 (588)
T 2j04_A 154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD 231 (588)
T ss_dssp EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence 999999885 36676 4577899999999999 88889999999999988773 3455 477789999
Q ss_pred EEEeCCCCEEEEEECCCEEEEEecCCceeeeeeccccceeEeEe---cCCCEEEEEEcCCeEEEEEec
Q 003445 233 LTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNV---HEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 233 l~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~---~dg~lLa~~~~Dg~V~IW~ld 297 (819)
++|+ |+.|++++++.|++|+....+.......+...+.++.+ ++++.+++++.+|+ ++|.++
T Consensus 232 vaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 232 LKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 9999 68999998888999999987774333356666777665 56789999999999 999988
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=6e-26 Score=250.88 Aligned_cols=257 Identities=17% Similarity=0.192 Sum_probs=215.9
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCeEEE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA-ASGTIKL 85 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs-~DG~I~I 85 (819)
..+..+..|. .+.+++|+|++..++++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|++++ .++.|++
T Consensus 23 ~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v 100 (391)
T 1l0q_A 23 KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSV 100 (391)
T ss_dssp EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEE
Confidence 3445666665 599999999665566788899999999999999998888655 899999999999876554 5799999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEecCCCEE-EEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE-EEEEC
Q 003445 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFF-ASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWV-VSGGE 163 (819)
Q Consensus 86 WDl~s~~~i~~l~~h~~~I~sl~fsp~g~~L-asgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L-~sgs~ 163 (819)
||+.+++.+..+..+ ..+.+++|+|++++| ++++.++.|++||+.+++.+..+..+ ..+.+++|+|++++| ++++.
T Consensus 101 ~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~ 178 (391)
T 1l0q_A 101 IDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFD 178 (391)
T ss_dssp EETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETT
T ss_pred EECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCC
Confidence 999999998888754 568999999999977 67778999999999999999888865 457999999999988 56778
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE---CCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCC
Q 003445 164 DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS---ADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR 240 (819)
Q Consensus 164 Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs---~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~ 240 (819)
++.|++||+++++.+..+. +...+.+++|+|++.+|++++ .++.|++||+.+++.+..+..+. .+.+++|+|+|+
T Consensus 179 ~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~ 256 (391)
T 1l0q_A 179 SMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGK 256 (391)
T ss_dssp TTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSS
T ss_pred CCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCC
Confidence 8999999999998888776 566889999999999999888 68999999999999888887654 579999999999
Q ss_pred EEEEE-ECC-CEEEEEecCCceeeeeecccc
Q 003445 241 TLLCG-LHE-SLKVFSWEPIRCHDAVDVGWS 269 (819)
Q Consensus 241 ~Lasg-s~d-~I~Vwd~~~~~~~~~~~~~~s 269 (819)
+|+++ +.+ .+++||..+.+....+..+..
T Consensus 257 ~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~ 287 (391)
T 1l0q_A 257 KVYVALSFXNTVSVIDTATNTITATMAVGKN 287 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred EEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence 88544 434 699999999888776655443
No 118
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.7e-28 Score=292.66 Aligned_cols=248 Identities=21% Similarity=0.284 Sum_probs=213.4
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC--CCeEEEEEcCCCCCeEEEEEecC--CCEEEEEECCCcEEEE
Q 003445 53 LSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE--EAKIVRTLTGHRSNCISVDFHPF--GEFFASGSLDTNLKIW 128 (819)
Q Consensus 53 ~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~--s~~~i~~l~~h~~~I~sl~fsp~--g~~Lasgs~Dg~I~Iw 128 (819)
..+.+|.+.|++++|+|++++|++|+.||.|++||+. +++.+..+.+|...|.+++|+|+ +++|++|+.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4578999999999999999999999999999999998 56778889999999999999988 9999999999999999
Q ss_pred ECCCCe--EEEEEecCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCC--eEEEEEecCCCCeEEEEEeC-------
Q 003445 129 DIRKKG--CIHTYKGHTRGVNAIRFTPD--GRWVVSGGEDNTVKLWDLTAG--KLLHDFKCHEGQIQCIDFHP------- 195 (819)
Q Consensus 129 Di~t~~--~i~~~~~h~~~I~sl~fspd--g~~L~sgs~Dg~I~IwDl~t~--~~i~~~~~h~~~I~sl~fsp------- 195 (819)
|+.+++ .+..+.+|...|.+++|+|+ ++++++|+.||.|++||++++ .....+..|...|.+++|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 999987 77788889999999999999 999999999999999999887 34455678999999999999
Q ss_pred ------CCCEEEEEECCCeEEEEECCCC----eEEEEeCCCCCCeeEEEEeCC---CCEEEEEECC-CEEEEEecCCce-
Q 003445 196 ------HEFLLATGSADRTVKFWDLETF----ELIGSAGPETSGVRCLTFNPD---GRTLLCGLHE-SLKVFSWEPIRC- 260 (819)
Q Consensus 196 ------dg~~Lasgs~Dg~I~iwDl~~~----~~l~~~~~~~~~I~sl~fspd---g~~Lasgs~d-~I~Vwd~~~~~~- 260 (819)
++.+|++|+.||.|++||++++ .....+..|...|.+++|+|+ +.+|++|+.+ .|++|++.....
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~ 242 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence 5899999999999999999876 567778899999999999999 8999998876 599999988642
Q ss_pred ----eeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCCc
Q 003445 261 ----HDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISR 300 (819)
Q Consensus 261 ----~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~ 300 (819)
......+...+..+.+ ++++++++++.||.|++|+++...
T Consensus 243 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 1122224445555655 789999999999999999998543
No 119
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=8.2e-26 Score=245.25 Aligned_cols=258 Identities=18% Similarity=0.275 Sum_probs=211.8
Q ss_pred EECCCCceEEEecCCCCCeEEEEEcCC---CCEEEEEECCCeEEEEECCC-CeEE-EEEcCCCCCeEEEEEecCCCEEEE
Q 003445 44 WAIGKPNAILSLSGHTSGIDSVSFDSS---EVLVAAGAASGTIKLWDLEE-AKIV-RTLTGHRSNCISVDFHPFGEFFAS 118 (819)
Q Consensus 44 Wdl~~~~~i~~l~~h~~~V~~l~fspd---g~~Lasgs~DG~I~IWDl~s-~~~i-~~l~~h~~~I~sl~fsp~g~~Las 118 (819)
|+....+.+..+.+|.+.|++++|+|+ +.+|++|+.||.|++||+.+ +..+ ..+.+|...|.+++|+|++++|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence 455667778888999999999999999 59999999999999999997 5554 788899999999999999999999
Q ss_pred EECCCcEEEEECCCCeEEEEEecCCCCeEEEEE--cCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCC
Q 003445 119 GSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRF--TPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPH 196 (819)
Q Consensus 119 gs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~f--spdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspd 196 (819)
++.||.|++||+++++.+. +..|...|.+++| ++++.+|++++.||.|++||+++++.+..+..+. .+.++.+.+
T Consensus 104 ~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~- 180 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY- 180 (368)
T ss_dssp EETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET-
T ss_pred EcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC-
Confidence 9999999999999998776 4569999999999 8999999999999999999999999988888654 666776664
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEe--CCCCCCeeEEEEeCCCCE----EEEEECC-CEEEEEecCC---ceeeeeec
Q 003445 197 EFLLATGSADRTVKFWDLETFELIGSA--GPETSGVRCLTFNPDGRT----LLCGLHE-SLKVFSWEPI---RCHDAVDV 266 (819)
Q Consensus 197 g~~Lasgs~Dg~I~iwDl~~~~~l~~~--~~~~~~I~sl~fspdg~~----Lasgs~d-~I~Vwd~~~~---~~~~~~~~ 266 (819)
..+++++.++.+++||++........ ......+.++.+.+++.. +++++.+ .+++|+++.. .....+..
T Consensus 181 -~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 259 (368)
T 3mmy_A 181 -PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC 259 (368)
T ss_dssp -TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC
T ss_pred -CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee
Confidence 48888999999999999876544332 234556777777766554 7777766 5999999887 33344444
Q ss_pred ccc------------ceeEeEe-cCCCEEEEEEcCCeEEEEEecCCceeeee
Q 003445 267 GWS------------RLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYT 305 (819)
Q Consensus 267 ~~s------------~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~~~p~~ 305 (819)
+.. .+..+.+ +++++|++++.||.|++|++..++.....
T Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 311 (368)
T 3mmy_A 260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS 311 (368)
T ss_dssp SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe
Confidence 333 4666665 68899999999999999999987665433
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=2.9e-26 Score=256.32 Aligned_cols=277 Identities=13% Similarity=0.122 Sum_probs=196.0
Q ss_pred CCEEEEEEe---eCCCcEEEEEeCCCeEEEEECCCC----------ceEEEecCCCCCeEEEEEc---------------
Q 003445 17 STVNCLKIG---RKSSRVLVTGGEDHKVNLWAIGKP----------NAILSLSGHTSGIDSVSFD--------------- 68 (819)
Q Consensus 17 ~~V~~lafs---p~~~~~Latgs~Dg~V~IWdl~~~----------~~i~~l~~h~~~V~~l~fs--------------- 68 (819)
....++.|. ++...++++| .++.|.+|+.... ..+..+ .+...+..+.|+
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTI-QTGLPTLHLSFSSSCSYSENLHDGDGN 93 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEE-ECSSCEEEEEECTTCEEECC-------
T ss_pred CCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEE-ecCCCeeeEeecCCccccccccCCCcc
Confidence 456677774 4445666655 4778999976211 111111 234445555544
Q ss_pred -----CCCCEEEEEECCCeEEEEECCCCeEEE-----EEcCCCCCeEEEEEec--------CCCEEEEEECCCcEEEEEC
Q 003445 69 -----SSEVLVAAGAASGTIKLWDLEEAKIVR-----TLTGHRSNCISVDFHP--------FGEFFASGSLDTNLKIWDI 130 (819)
Q Consensus 69 -----pdg~~Lasgs~DG~I~IWDl~s~~~i~-----~l~~h~~~I~sl~fsp--------~g~~Lasgs~Dg~I~IwDi 130 (819)
+++.+|++|+.|++|++||+..+.... .+.+|.+.|.+++|+| ++++||+|+.|++|+|||+
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~ 173 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL 173 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence 345689999999999999999886543 3578999999999998 7889999999999999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEE-------------------------ecC
Q 003445 131 RKKGCIHTYKGHTRGVNAIRFTPDGR-WVVSGGEDNTVKLWDLTAGKLLHDF-------------------------KCH 184 (819)
Q Consensus 131 ~t~~~i~~~~~h~~~I~sl~fspdg~-~L~sgs~Dg~I~IwDl~t~~~i~~~-------------------------~~h 184 (819)
+++.++..+..|...+.+++|+|++. +|++|+.||.|++||+++++..... .+|
T Consensus 174 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 253 (393)
T 4gq1_A 174 TDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGI 253 (393)
T ss_dssp ETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CC
T ss_pred CCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccc
Confidence 99988888888999999999999874 7999999999999999987643322 346
Q ss_pred CCCeEEEEEe-CCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEE------------------EEeC--CCCEEE
Q 003445 185 EGQIQCIDFH-PHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCL------------------TFNP--DGRTLL 243 (819)
Q Consensus 185 ~~~I~sl~fs-pdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl------------------~fsp--dg~~La 243 (819)
...+.++.|. |++..|++++.|+++++||+..++....+..+...+..+ .|++ ++.+++
T Consensus 254 ~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (393)
T 4gq1_A 254 ASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFAT 333 (393)
T ss_dssp SSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEE
T ss_pred cccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEE
Confidence 6778889987 799999999999999999998877665554443333333 2333 333555
Q ss_pred EEECC-CEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEe
Q 003445 244 CGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 296 (819)
Q Consensus 244 sgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~l 296 (819)
+|+.+ .|++||..+.++......+...+..+.+ ++|++|++++++| +.+|.+
T Consensus 334 sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 334 AHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 66655 5999999998888777667778888877 7999999998776 444443
No 121
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.4e-27 Score=274.69 Aligned_cols=256 Identities=13% Similarity=0.145 Sum_probs=207.6
Q ss_pred EEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS-GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (819)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~-~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (819)
.+.+|...|++++|+|++ .++.+.+|+. +....+. .|...|.+++|+|+|.+|++++.||.|++||.+
T Consensus 47 ~l~gh~~~v~~V~FsPdg--------~~~~~~~~~~---~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~ 115 (588)
T 2j04_A 47 DINCNSKNLFHVKEFPLE--------FENKLDFELA---QQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN 115 (588)
T ss_dssp CCSSBGGGTEEEEEECCC--------CCCTTTTSCC---CSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETT
T ss_pred eecCCCccEEEEEECCCC--------CcceEEEEeC---CCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence 347899999999999954 4555555553 3222233 568899999999999999999999999999965
Q ss_pred CCeEEEEEcCCCC-----CeEEEEEecCCCEEEEEECCCcEEEEECCCCe-------EEEEE----ecCCCCeEEEEEcC
Q 003445 90 EAKIVRTLTGHRS-----NCISVDFHPFGEFFASGSLDTNLKIWDIRKKG-------CIHTY----KGHTRGVNAIRFTP 153 (819)
Q Consensus 90 s~~~i~~l~~h~~-----~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~-------~i~~~----~~h~~~I~sl~fsp 153 (819)
. .+..+. |.. .+.+++|+|+|++|++|+.||+|++||+.++. .+.++ .+|...|.+++|+|
T Consensus 116 ~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP 192 (588)
T 2j04_A 116 K--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE 192 (588)
T ss_dssp E--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET
T ss_pred c--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC
Confidence 4 666666 665 49999999999999999999999999999875 36776 56778999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeE---EEEEe-cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCC
Q 003445 154 DGRWVVSGGEDNTVKLWDLTAGKL---LHDFK-CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSG 229 (819)
Q Consensus 154 dg~~L~sgs~Dg~I~IwDl~t~~~---i~~~~-~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~ 229 (819)
|| +++++.|+.|++||+..++. ...+. +|...|.+++|+ |.+||+++ +++|++||+.+++......+|...
T Consensus 193 dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~ 267 (588)
T 2j04_A 193 DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLEN 267 (588)
T ss_dssp TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSC
T ss_pred Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCce
Confidence 99 88899999999999988773 35564 788899999999 68999987 799999999998885444479999
Q ss_pred eeEEEE--eCCCCEEEEEECCCEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEEecCCcee
Q 003445 230 VRCLTF--NPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIE 302 (819)
Q Consensus 230 I~sl~f--spdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~ 302 (819)
+..+.| +|++..|+++..++.++|..+. +. ..+++.++++. |+.+++|+.......
T Consensus 268 V~~va~~~s~d~~~La~a~edG~klw~~d~-------------~~--~spd~~l~a~~--d~~v~lW~~~g~~l~ 325 (588)
T 2j04_A 268 FHIIPLNHEKESTILLMSNKTSYKVLLEDE-------------LH--VTADNIIAPYL--EKKFKKWSTIWNEFN 325 (588)
T ss_dssp CCEEEETTCSSCEEEEECSSCEEEEEESSS-------------EE--EECCCSSHHHH--HHHHHHTTTTTTSSS
T ss_pred EEEEEeeeCCCCCEEEEEcCCCCEEEeecc-------------EE--ECCCceEEEEc--CCEEEEEECCCCcee
Confidence 999999 9999999999877659999872 11 33666666664 888888887665543
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.9e-26 Score=252.15 Aligned_cols=229 Identities=12% Similarity=0.122 Sum_probs=190.7
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC---------CCeEEE
Q 003445 67 FDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR---------KKGCIH 137 (819)
Q Consensus 67 fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~---------t~~~i~ 137 (819)
+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|+.|++|+.. +++.+.
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~ 118 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLR 118 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence 34578899999999999999999998888776 456778889987 9999999999999665 555455
Q ss_pred EEe-cCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCeEEEEEec-CCCCeEEEEEeCCCCEEEEEECCCeEEEEE
Q 003445 138 TYK-GHTRGVNAIRFTP--DGRWVVSGGEDNTVKLWDLTAGKLLHDFKC-HEGQIQCIDFHPHEFLLATGSADRTVKFWD 213 (819)
Q Consensus 138 ~~~-~h~~~I~sl~fsp--dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~-h~~~I~sl~fspdg~~Lasgs~Dg~I~iwD 213 (819)
.+. .|...|.+++|+| ++++|++++.||.|++||+++++.+..+.. +...|.+++|+|++.+|++|+.||.|++||
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd 198 (343)
T 3lrv_A 119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYN 198 (343)
T ss_dssp EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 554 6778899999999 999999999999999999999998776643 456899999999999999999999999999
Q ss_pred CCCCeEE-EEeCC-CCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeeeeec---ccccee--EeEe-cCCCEEEEE
Q 003445 214 LETFELI-GSAGP-ETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDV---GWSRLS--DLNV-HEGKLLGCS 285 (819)
Q Consensus 214 l~~~~~l-~~~~~-~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~---~~s~i~--~l~~-~dg~lLa~~ 285 (819)
+++++.+ ..+.. |..+|.+++|+|+|.+|++++++.|++||+...++...+.. +...+. .+.+ +++++|+++
T Consensus 199 ~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 278 (343)
T 3lrv_A 199 LSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAY 278 (343)
T ss_dssp SSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEE
T ss_pred CCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEe
Confidence 9999877 77877 99999999999999999999988999999998776544332 112222 2444 789999999
Q ss_pred Ec-CCeEEEEEecCCc
Q 003445 286 YN-QSCVGVWVVDISR 300 (819)
Q Consensus 286 ~~-Dg~V~IW~ld~~~ 300 (819)
+. |+.|+||+++...
T Consensus 279 s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 279 SNESNSLTIYKFDKKT 294 (343)
T ss_dssp ETTTTEEEEEEECTTT
T ss_pred cCCCCcEEEEEEcccc
Confidence 98 9999999997654
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=2.1e-24 Score=241.78 Aligned_cols=241 Identities=15% Similarity=0.094 Sum_probs=210.8
Q ss_pred EeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCC
Q 003445 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA-ASGTIKLWDLEE 90 (819)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs-~DG~I~IWDl~s 90 (819)
+.+|...|++++|++ ++.++++++.|+.|++||+.+++.+..+..|...+.+++|+|+++++++++ .++.|++||+.+
T Consensus 165 ~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 165 YKKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT 243 (433)
T ss_dssp HHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred ccccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence 457889999999988 778999999999999999999999999999999999999999999885554 799999999999
Q ss_pred CeEEEEEcCCCCCeEEEEEecCCCEEEEEE--------CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE-EEE
Q 003445 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGS--------LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWV-VSG 161 (819)
Q Consensus 91 ~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs--------~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L-~sg 161 (819)
++.+..+..+ ..+.+++|+|+++++++++ .||.|++||+++++.+..+. |...+.+++|+|+++++ +++
T Consensus 244 ~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~ 321 (433)
T 3bws_A 244 KLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSD 321 (433)
T ss_dssp TEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEE
T ss_pred CcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEe
Confidence 9998888754 4589999999999999888 58899999999998877664 55688999999999765 556
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC---------------CCeEEEEECCCCeEEEEeCCC
Q 003445 162 GEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA---------------DRTVKFWDLETFELIGSAGPE 226 (819)
Q Consensus 162 s~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~---------------Dg~I~iwDl~~~~~l~~~~~~ 226 (819)
+.++.|++||+.+++.+..+. +...+.+++|+|++.+|++++. ||.|++||+.+++.+..+..
T Consensus 322 ~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~- 399 (433)
T 3bws_A 322 MCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA- 399 (433)
T ss_dssp TTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-
T ss_pred cCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-
Confidence 889999999999999888876 6778999999999999998886 57999999999999888776
Q ss_pred CCCeeEEEEeCCCCEEEEEE--CCCEEEEEecC
Q 003445 227 TSGVRCLTFNPDGRTLLCGL--HESLKVFSWEP 257 (819)
Q Consensus 227 ~~~I~sl~fspdg~~Lasgs--~d~I~Vwd~~~ 257 (819)
...+.+++|+|+|++|++++ ++.+++|+++.
T Consensus 400 ~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 400 GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 45789999999999998775 34699999863
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=1.3e-24 Score=236.41 Aligned_cols=243 Identities=13% Similarity=0.160 Sum_probs=184.2
Q ss_pred EEEeccCC----CEEEEEEeeCCC-c-EEEEEeCCCeEEEEECCCC---ceEEEecCCCC--------------------
Q 003445 10 QEFVAHSS----TVNCLKIGRKSS-R-VLVTGGEDHKVNLWAIGKP---NAILSLSGHTS-------------------- 60 (819)
Q Consensus 10 ~~~~~H~~----~V~~lafsp~~~-~-~Latgs~Dg~V~IWdl~~~---~~i~~l~~h~~-------------------- 60 (819)
.+|+.-.+ .+.++-|-..+. . .++++++ ..|.+|+..++ +.++++..|..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 107 (356)
T 2w18_A 29 SELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG 107 (356)
T ss_dssp EEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC
T ss_pred ehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec
Confidence 35554443 244555544232 2 4566665 67999999888 77888777664
Q ss_pred -----CeEEEEEcCC----CCEEEEEEC--------------------CCeEEEEEC-CCCeEEEEEcCCCCCeEEEEEe
Q 003445 61 -----GIDSVSFDSS----EVLVAAGAA--------------------SGTIKLWDL-EEAKIVRTLTGHRSNCISVDFH 110 (819)
Q Consensus 61 -----~V~~l~fspd----g~~Lasgs~--------------------DG~I~IWDl-~s~~~i~~l~~h~~~I~sl~fs 110 (819)
.|+.++|+|+ ++++++++. |+.|++|++ .+++.+..+.+|...+..++|+
T Consensus 108 ~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs 187 (356)
T 2w18_A 108 NLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFA 187 (356)
T ss_dssp SSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEE
T ss_pred cccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEee
Confidence 4556667777 777777653 888888888 4577878888888888888888
Q ss_pred c---CCCEEEEEECCCcEEEEECCCCeEEEEEecCC---CCeEEEEEcCCCCEE------------EEEECCCeEEEEEC
Q 003445 111 P---FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT---RGVNAIRFTPDGRWV------------VSGGEDNTVKLWDL 172 (819)
Q Consensus 111 p---~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~---~~I~sl~fspdg~~L------------~sgs~Dg~I~IwDl 172 (819)
+ ++.+|++|+.|++|+|||+.++++++++.+|. ..+.+++|+|+|.++ ++|+.|++|++||.
T Consensus 188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~ 267 (356)
T 2w18_A 188 EVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP 267 (356)
T ss_dssp EEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEET
T ss_pred ccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence 8 67899999999999999999999999998754 357788999999876 56788999999999
Q ss_pred CCCeEEEEE-----ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCee-EEEEeCCCCEEEEEE
Q 003445 173 TAGKLLHDF-----KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVR-CLTFNPDGRTLLCGL 246 (819)
Q Consensus 173 ~t~~~i~~~-----~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~-sl~fspdg~~Lasgs 246 (819)
.+++.+..+ .+|...+.+..++ +.++++|+.|++|+|||+.+++++..+.+|...+. +++|+|||++|++|+
T Consensus 268 ~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS 345 (356)
T 2w18_A 268 KTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQ 345 (356)
T ss_dssp TTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEEC
T ss_pred CCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEE
Confidence 999988765 2565555544444 88999999999999999999999999998877655 689999999999998
Q ss_pred CC-CEEEEEe
Q 003445 247 HE-SLKVFSW 255 (819)
Q Consensus 247 ~d-~I~Vwd~ 255 (819)
.| .|+||++
T Consensus 346 ~D~TIklWd~ 355 (356)
T 2w18_A 346 KDGNIFVYHY 355 (356)
T ss_dssp TTSCEEEEEE
T ss_pred CCCcEEEecC
Confidence 77 5999986
No 125
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=1.8e-24 Score=238.50 Aligned_cols=246 Identities=11% Similarity=0.106 Sum_probs=190.0
Q ss_pred EEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEE-EEEEC
Q 003445 43 LWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFF-ASGSL 121 (819)
Q Consensus 43 IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~L-asgs~ 121 (819)
||++.+...+..+..|...|.+++|+||+++|++|+.+| +++||+.+++.+.....+ .+..+++.++++++ ++++.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 79 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGV 79 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECC
Confidence 566667777777889999999999999999999988665 789999988776655432 47788898888877 56777
Q ss_pred CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEEEecCCCCeEEEEEeCCCCEE
Q 003445 122 DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPHEFLL 200 (819)
Q Consensus 122 Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~-~~i~~~~~h~~~I~sl~fspdg~~L 200 (819)
|+.|++||..+++++..+. +...|.+++|+++. ++++ .++.|++||+.++ +.+..+.. ....+++++ .++
T Consensus 80 d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l 150 (355)
T 3vu4_A 80 KEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL 150 (355)
T ss_dssp TTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred ccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence 8999999999999999887 67789999999763 4444 4889999999988 66665554 445667777 566
Q ss_pred EE--EECCCeEEEEECCCCe---------------E-EEEeCCCCCCeeEEEEeCCCCEEEEEECC-C-EEEEEecCCce
Q 003445 201 AT--GSADRTVKFWDLETFE---------------L-IGSAGPETSGVRCLTFNPDGRTLLCGLHE-S-LKVFSWEPIRC 260 (819)
Q Consensus 201 as--gs~Dg~I~iwDl~~~~---------------~-l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~-I~Vwd~~~~~~ 260 (819)
++ |+.||.|++||+.++. + +..+..|...|.+++|+|+|++|++|+.| . +++||+.+.++
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 66 5789999999999865 2 67788999999999999999999999887 4 99999999999
Q ss_pred eeeee-c-cccceeEeEe-cCCCEEEEEEcCCeEEEEEecCCc
Q 003445 261 HDAVD-V-GWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISR 300 (819)
Q Consensus 261 ~~~~~-~-~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~ 300 (819)
...+. . +...+..+.+ +++++|++++.|+.|+||++....
T Consensus 231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 88887 3 6677878777 789999999999999999998753
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=1.2e-24 Score=245.58 Aligned_cols=284 Identities=13% Similarity=0.062 Sum_probs=224.3
Q ss_pred CCEEEEEEeeCCCcEEEEEe----CCC----eEEEEEC--CCCceE--EEecCCCCCeEEEEEcC--------------C
Q 003445 17 STVNCLKIGRKSSRVLVTGG----EDH----KVNLWAI--GKPNAI--LSLSGHTSGIDSVSFDS--------------S 70 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs----~Dg----~V~IWdl--~~~~~i--~~l~~h~~~V~~l~fsp--------------d 70 (819)
..|+..+|.+.+..++++|+ .|| .|+|||+ .+++.+ ..+.+|...+..+++.+ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 46778889888888888886 567 8999999 888887 45788888888887764 1
Q ss_pred CCEEEEEECC------CeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCC---cEEEEECCCCeEEEEEec
Q 003445 71 EVLVAAGAAS------GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT---NLKIWDIRKKGCIHTYKG 141 (819)
Q Consensus 71 g~~Lasgs~D------G~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg---~I~IwDi~t~~~i~~~~~ 141 (819)
+..++.++.+ +.|++||+.. .....+.+|...+.+++|+|+|++|++++.++ .|++||+.+++.. .+..
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~ 220 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVAS 220 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEEC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eeec
Confidence 5555555554 7999999974 44567777999999999999999999999885 9999999998875 4666
Q ss_pred CCCCeEEEEEcCCCCEEE-EEECCC--eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC-C--eEEEEECC
Q 003445 142 HTRGVNAIRFTPDGRWVV-SGGEDN--TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD-R--TVKFWDLE 215 (819)
Q Consensus 142 h~~~I~sl~fspdg~~L~-sgs~Dg--~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~D-g--~I~iwDl~ 215 (819)
|...+.+++|+|||++|+ +++.++ .|++||+.+++. ..+..|...+.+++|+|+|++|++++.+ + .|++||+.
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~ 299 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN 299 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence 888999999999999888 565555 499999998876 5566788889999999999999988864 4 78888998
Q ss_pred CCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC----CEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCC-
Q 003445 216 TFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE----SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQS- 289 (819)
Q Consensus 216 ~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d----~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg- 289 (819)
+++.. .+..+...+.+++|+|+|++|++++.+ .|.+|+.++.+....... . .+..+.+ ++|+.|++++.++
T Consensus 300 ~~~~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~-~-~~~~~~~spdg~~l~~~s~~~~ 376 (415)
T 2hqs_A 300 GGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSST-F-LDETPSLAPNGTMVIYSSSQGM 376 (415)
T ss_dssp SSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCS-S-SCEEEEECTTSSEEEEEEEETT
T ss_pred CCCEE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCC-C-CcCCeEEcCCCCEEEEEEcCCC
Confidence 87743 445566778999999999999977643 588888888776543332 2 4444444 7899888887776
Q ss_pred --eEEEEEecCCceeeeee
Q 003445 290 --CVGVWVVDISRIEPYTI 306 (819)
Q Consensus 290 --~V~IW~ld~~~~~p~~~ 306 (819)
.|++|+++.+....+..
T Consensus 377 ~~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 377 GSVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp EEEEEEEETTSCCEEECCC
T ss_pred ccEEEEEECCCCcEEEeeC
Confidence 79999998777665543
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=1.9e-24 Score=234.96 Aligned_cols=175 Identities=11% Similarity=0.162 Sum_probs=148.0
Q ss_pred CCeEEEEEC-CCCceEEEecCCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCCCeEEEEEcCCC---CCeEEEEEe
Q 003445 38 DHKVNLWAI-GKPNAILSLSGHTSGIDSVSFDS---SEVLVAAGAASGTIKLWDLEEAKIVRTLTGHR---SNCISVDFH 110 (819)
Q Consensus 38 Dg~V~IWdl-~~~~~i~~l~~h~~~V~~l~fsp---dg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~---~~I~sl~fs 110 (819)
|+.|++|++ .+++.+..+.+|...+..++|++ ++.+|++|+.|++|+|||+.+++.++++.+|. ..+.+++|+
T Consensus 156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafS 235 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYS 235 (356)
T ss_dssp TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEE
T ss_pred CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEEC
Confidence 888999998 55788888888888889999988 77899999999999999999999999998754 367788999
Q ss_pred cCCCEE------------EEEECCCcEEEEECCCCeEEEEE-----ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 111 PFGEFF------------ASGSLDTNLKIWDIRKKGCIHTY-----KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT 173 (819)
Q Consensus 111 p~g~~L------------asgs~Dg~I~IwDi~t~~~i~~~-----~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~ 173 (819)
|+|.++ ++|+.|++|++||..+++.+..+ .+|...+.+..++ +.++++|+.|++|+|||+.
T Consensus 236 pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~ 313 (356)
T 2w18_A 236 EMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLL 313 (356)
T ss_dssp ETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred CCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECC
Confidence 999876 56888999999999999988765 3666665555554 8899999999999999999
Q ss_pred CCeEEEEEecCCCCeE-EEEEeCCCCEEEEEECCCeEEEEEC
Q 003445 174 AGKLLHDFKCHEGQIQ-CIDFHPHEFLLATGSADRTVKFWDL 214 (819)
Q Consensus 174 t~~~i~~~~~h~~~I~-sl~fspdg~~Lasgs~Dg~I~iwDl 214 (819)
+++++.++.+|...+. +++|+|||++|++|+.|++|+|||+
T Consensus 314 tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 314 LGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999998877655 6899999999999999999999995
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=1.6e-22 Score=236.41 Aligned_cols=294 Identities=13% Similarity=0.166 Sum_probs=234.3
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEEC--CCCceEEEecCCCCCeEEEEEcC----CCCEEEEEEC-C
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI--GKPNAILSLSGHTSGIDSVSFDS----SEVLVAAGAA-S 80 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl--~~~~~i~~l~~h~~~V~~l~fsp----dg~~Lasgs~-D 80 (819)
.+..+..+.. +.+++|+| ++++|++++.|+.|.+||+ .+++.+..+. +...+..++|+| +++++++++. +
T Consensus 171 ~~~~i~~g~~-~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~ 247 (543)
T 1nir_A 171 IVKVIDTGYA-VHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWP 247 (543)
T ss_dssp EEEEEECSTT-EEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEES
T ss_pred EEEEEecCcc-cceEEECC-CCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccC
Confidence 4556663333 89999999 7778999999999999999 8888888888 456789999999 9999999874 8
Q ss_pred CeEEEEECCCCeEEEEEcCC----------C-CCeEEEEEecCCCE-EEEEECCCcEEEEECCCCeEEE--EEecCCCCe
Q 003445 81 GTIKLWDLEEAKIVRTLTGH----------R-SNCISVDFHPFGEF-FASGSLDTNLKIWDIRKKGCIH--TYKGHTRGV 146 (819)
Q Consensus 81 G~I~IWDl~s~~~i~~l~~h----------~-~~I~sl~fsp~g~~-Lasgs~Dg~I~IwDi~t~~~i~--~~~~h~~~I 146 (819)
++|.+||..+++++..+..+ . ..+.++.++|++.. +++...++.|.+||+.+.+.+. .+. +...+
T Consensus 248 ~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~ 326 (543)
T 1nir_A 248 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFL 326 (543)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSC
T ss_pred CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCc
Confidence 99999999999999888642 2 26889999998765 5566678999999998765443 443 56678
Q ss_pred EEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEec----CCCCeEEEEEeCC-CCEEEEEE-CCCeEEEEECCC---
Q 003445 147 NAIRFTPDGRWVVSGG-EDNTVKLWDLTAGKLLHDFKC----HEGQIQCIDFHPH-EFLLATGS-ADRTVKFWDLET--- 216 (819)
Q Consensus 147 ~sl~fspdg~~L~sgs-~Dg~I~IwDl~t~~~i~~~~~----h~~~I~sl~fspd-g~~Lasgs-~Dg~I~iwDl~~--- 216 (819)
..+.|+|+|++|++++ .++.|.+||..+++++..+.. |.+....+ ++|+ +.+++++. .|++|.+||+.+
T Consensus 327 ~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~ 405 (543)
T 1nir_A 327 HDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH 405 (543)
T ss_dssp CCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred cCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC
Confidence 8999999999877665 588999999999999988874 54444443 5787 66677765 589999999998
Q ss_pred ----CeEEEEeCCCCCCeeEEEEeCCCCEEEEEE--------CCCEEEEEecCCcee-eeeec--------cccceeEeE
Q 003445 217 ----FELIGSAGPETSGVRCLTFNPDGRTLLCGL--------HESLKVFSWEPIRCH-DAVDV--------GWSRLSDLN 275 (819)
Q Consensus 217 ----~~~l~~~~~~~~~I~sl~fspdg~~Lasgs--------~d~I~Vwd~~~~~~~-~~~~~--------~~s~i~~l~ 275 (819)
++++..+..+...+..+.|+|+|++|++++ ++.|.|||.++.++. ..+.+ +...+..+.
T Consensus 406 ~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 485 (543)
T 1nir_A 406 PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE 485 (543)
T ss_dssp TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEE
T ss_pred chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEecc
Confidence 899999999988899999999999999986 458999999988776 54422 233444444
Q ss_pred e-cCCCEEEEEE-----cCCeEEEEEecCCceeeeee
Q 003445 276 V-HEGKLLGCSY-----NQSCVGVWVVDISRIEPYTI 306 (819)
Q Consensus 276 ~-~dg~lLa~~~-----~Dg~V~IW~ld~~~~~p~~~ 306 (819)
+ ++|+.+.++. .++.|.|||..+.++.....
T Consensus 486 ~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 486 YNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp ECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 4 7888887653 37999999999998875443
No 129
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=3.4e-22 Score=215.49 Aligned_cols=277 Identities=13% Similarity=0.105 Sum_probs=208.2
Q ss_pred EEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeE-EEEEcCC
Q 003445 23 KIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA-SGTIKLWDLEEAKI-VRTLTGH 100 (819)
Q Consensus 23 afsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~-DG~I~IWDl~s~~~-i~~l~~h 100 (819)
.|.++++.+++++..++.|.+||..+++....+..+...+ +++|+|+++++++++. ++.|.+||+.+++. ...+..+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 4566677778899999999999999999988888766677 9999999997776666 89999999999987 7777766
Q ss_pred CCCeEEEEEecCCCEEEEEECCC---cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCe-EEEEECCCC
Q 003445 101 RSNCISVDFHPFGEFFASGSLDT---NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSG-GEDNT-VKLWDLTAG 175 (819)
Q Consensus 101 ~~~I~sl~fsp~g~~Lasgs~Dg---~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sg-s~Dg~-I~IwDl~t~ 175 (819)
..+..+++|+|++++++++..++ .|.+||+.+++.+..+..+ ....+++|+|+|++|+++ ..++. |.+|++...
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~ 161 (331)
T 3u4y_A 83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD 161 (331)
T ss_dssp SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence 66666699999999999655553 8999999999988887754 457899999999866555 55578 999998764
Q ss_pred eEEE----EEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCeE---EEEeCCCCCCeeEEEEeCCCCEEEEEEC
Q 003445 176 KLLH----DFKCHEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLETFEL---IGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (819)
Q Consensus 176 ~~i~----~~~~h~~~I~sl~fspdg~~Lasgs-~Dg~I~iwDl~~~~~---l~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (819)
..+. ...........++|+|+|++|++++ .++.|++||+.+++. +..+... ..+..++|+|||++|+++..
T Consensus 162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECS
T ss_pred CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEc
Confidence 3321 1123345689999999999665554 689999999998887 6666543 56789999999998887654
Q ss_pred C--CEEEEEecCCce--eeeeecc----cccee---E-eEecCCCEEEEEEc-CCeEEEEEecCCcee
Q 003445 248 E--SLKVFSWEPIRC--HDAVDVG----WSRLS---D-LNVHEGKLLGCSYN-QSCVGVWVVDISRIE 302 (819)
Q Consensus 248 d--~I~Vwd~~~~~~--~~~~~~~----~s~i~---~-l~~~dg~lLa~~~~-Dg~V~IW~ld~~~~~ 302 (819)
+ .+.+||..+++. ...+... ..... . ...++++.|+++.. ++.|.+|++......
T Consensus 241 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~ 308 (331)
T 3u4y_A 241 STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVG 308 (331)
T ss_dssp SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEE
T ss_pred CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCccc
Confidence 3 589999888766 2222211 11111 1 33478888766554 679999999876544
No 130
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=2.5e-21 Score=209.78 Aligned_cols=270 Identities=10% Similarity=0.031 Sum_probs=215.6
Q ss_pred cCCCEEEEEEeeCCCcEEEEEe-C------CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEE
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGG-E------DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG-AASGTIKLW 86 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs-~------Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasg-s~DG~I~IW 86 (819)
....+..++|+|++.. +++++ . ++.|.+||..+++.+..+.. ...+..++|++++++++++ ..++.|.+|
T Consensus 39 ~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENA-LWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EESSEEEEEEETTTTE-EEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred hccCccceEECCCCCE-EEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 4467889999995554 45544 2 67899999999998888774 3457889999999965554 557999999
Q ss_pred ECCCCeEEEEEcCCCCC---------eEEEEEecCCCEEEEEE--CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCC
Q 003445 87 DLEEAKIVRTLTGHRSN---------CISVDFHPFGEFFASGS--LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDG 155 (819)
Q Consensus 87 Dl~s~~~i~~l~~h~~~---------I~sl~fsp~g~~Lasgs--~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg 155 (819)
|+.+++.+..+..+... +.+++|+|+++++++++ .++.|.+||..+++.+..+..+...+.+++|+|+|
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence 99999998888765432 68899999999877776 47889999999999998887666668899999999
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEec----CCCCeEEEEEeCCCCEEEEEEC-CCeEEEEECCCCeEEEEeCCCCCCe
Q 003445 156 RWVVSGGEDNTVKLWDLTAGKLLHDFKC----HEGQIQCIDFHPHEFLLATGSA-DRTVKFWDLETFELIGSAGPETSGV 230 (819)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~~i~~~~~----h~~~I~sl~fspdg~~Lasgs~-Dg~I~iwDl~~~~~l~~~~~~~~~I 230 (819)
++|++++.++.|.+||+.+++.+..+.. +...+..++|+|++++|++++. ++.|.+||..+++.+..+.... .
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~ 274 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--S 274 (353)
T ss_dssp TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--C
T ss_pred CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--C
Confidence 9999999999999999999998888764 4556889999999998777765 4899999999999887776543 2
Q ss_pred eEEEEeCCCCEEEEEEC--CCEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcC
Q 003445 231 RCLTFNPDGRTLLCGLH--ESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQ 288 (819)
Q Consensus 231 ~sl~fspdg~~Lasgs~--d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~D 288 (819)
..++|+|+|++++++.. +.+.+||..+.+....+............++|++|+++..+
T Consensus 275 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 275 LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 67999999998776653 46999999988888777665543333334788877666554
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=2e-22 Score=227.40 Aligned_cols=259 Identities=10% Similarity=0.064 Sum_probs=198.7
Q ss_pred EEEeccCCCEEEEEEeeC--------------CCcEEEEEeC--C---CeEEEEECCCCceEEEecCCCCCeEEEEEcCC
Q 003445 10 QEFVAHSSTVNCLKIGRK--------------SSRVLVTGGE--D---HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSS 70 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~--------------~~~~Latgs~--D---g~V~IWdl~~~~~i~~l~~h~~~V~~l~fspd 70 (819)
..+.+|...+.++++.+. +.++++++.. + +.|++||+. +.....+.+|...|.+++|+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spd 189 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPD 189 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTT
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCC
Confidence 457788888887777641 3444444432 2 799999997 4556777789999999999999
Q ss_pred CCEEEEEECCC---eEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEE-EEECCCc--EEEEECCCCeEEEEEecCCC
Q 003445 71 EVLVAAGAASG---TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFA-SGSLDTN--LKIWDIRKKGCIHTYKGHTR 144 (819)
Q Consensus 71 g~~Lasgs~DG---~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~La-sgs~Dg~--I~IwDi~t~~~i~~~~~h~~ 144 (819)
+++|++++.++ .|++||+.+++.. .+..|...+.+++|+|+|++|+ +++.++. |++||+.+++. ..+..|..
T Consensus 190 g~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~ 267 (415)
T 2hqs_A 190 GSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRS 267 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSS
T ss_pred CCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCC
Confidence 99999999885 9999999998875 4666888999999999999888 5665554 99999998876 56677888
Q ss_pred CeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC---CeEEEEECCCCe
Q 003445 145 GVNAIRFTPDGRWVVSGGED-N--TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD---RTVKFWDLETFE 218 (819)
Q Consensus 145 ~I~sl~fspdg~~L~sgs~D-g--~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~D---g~I~iwDl~~~~ 218 (819)
.+.+++|+|||++|++++.+ + .|++||+.+++. ..+..+...+.+++|+|+|++|++++.+ +.|++||+.+++
T Consensus 268 ~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 268 NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 99999999999999988864 4 788889988764 3445566788999999999999988864 589999999988
Q ss_pred EEEEeCCCCCCeeEEEEeCCCCEEEEEECC----CEEEEEecCCceeeeeeccccceeEeE
Q 003445 219 LIGSAGPETSGVRCLTFNPDGRTLLCGLHE----SLKVFSWEPIRCHDAVDVGWSRLSDLN 275 (819)
Q Consensus 219 ~l~~~~~~~~~I~sl~fspdg~~Lasgs~d----~I~Vwd~~~~~~~~~~~~~~s~i~~l~ 275 (819)
.. .+..+. .+.+++|+|+|++|++++.+ .|.+|+++.. ....+..+...+....
T Consensus 347 ~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~-~~~~l~~~~~~v~~~~ 404 (415)
T 2hqs_A 347 VQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR-FKARLPATDGQVKFPA 404 (415)
T ss_dssp EE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC-CEEECCCSSSEEEEEE
T ss_pred EE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC-cEEEeeCCCCCCcCCc
Confidence 74 344443 78999999999998877644 3677776533 3333333333333333
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=3.6e-21 Score=207.06 Aligned_cols=265 Identities=15% Similarity=0.275 Sum_probs=192.6
Q ss_pred cEEEEEeCCCeEEEEECC-CC--ceEEEecCCCCCeEEEEEcCCCCEEEEEECC-CeEEEEECC--CCe--EEEEEcCCC
Q 003445 30 RVLVTGGEDHKVNLWAIG-KP--NAILSLSGHTSGIDSVSFDSSEVLVAAGAAS-GTIKLWDLE--EAK--IVRTLTGHR 101 (819)
Q Consensus 30 ~~Latgs~Dg~V~IWdl~-~~--~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D-G~I~IWDl~--s~~--~i~~l~~h~ 101 (819)
.++++++.|+.|.+|++. ++ +.+..+ .|...+.+++|+|++++|++++.+ +.|.+|++. +++ .+..+..+.
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence 445555789999999985 33 233333 477789999999999999888886 999999998 554 444555444
Q ss_pred CCeEEEEEecCCCEEEEEEC-CCcEEEEECC---CCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCC-C
Q 003445 102 SNCISVDFHPFGEFFASGSL-DTNLKIWDIR---KKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLWDLTA-G 175 (819)
Q Consensus 102 ~~I~sl~fsp~g~~Lasgs~-Dg~I~IwDi~---t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs-~Dg~I~IwDl~t-~ 175 (819)
.+..++|+|++++|++++. ++.|++||+. ....+..+..+ ..+.+++|+|+|++|++++ .++.|.+||+.+ +
T Consensus 85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 162 (343)
T 1ri6_A 85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDG 162 (343)
T ss_dssp -CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence 7889999999998877765 8889999994 34455555543 4588999999999888887 899999999987 6
Q ss_pred eEEE----EEec-CCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCC--CeE--EEEeC---CC---CCCeeEEEEeCCC
Q 003445 176 KLLH----DFKC-HEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLET--FEL--IGSAG---PE---TSGVRCLTFNPDG 239 (819)
Q Consensus 176 ~~i~----~~~~-h~~~I~sl~fspdg~~Lasgs-~Dg~I~iwDl~~--~~~--l~~~~---~~---~~~I~sl~fspdg 239 (819)
+... .+.. ....+..++|+|++.+|++++ .++.|.+||+.. ++. ..... .. ...+..++|+|+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 242 (343)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence 5432 2232 345788999999999776655 789999999953 332 22222 11 2356789999999
Q ss_pred CEEEEEEC--CCEEEEEecC----CceeeeeeccccceeEeEe-cCCCEEEEEE-cCCeEEEEEecC
Q 003445 240 RTLLCGLH--ESLKVFSWEP----IRCHDAVDVGWSRLSDLNV-HEGKLLGCSY-NQSCVGVWVVDI 298 (819)
Q Consensus 240 ~~Lasgs~--d~I~Vwd~~~----~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~-~Dg~V~IW~ld~ 298 (819)
++|+++.. +.+.+|+++. .+....+..... ...+.+ ++|++|+++. .++.|.+|+++.
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred CEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 98886553 4699999983 233444444444 444444 7888888777 689999997773
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=1.3e-21 Score=228.78 Aligned_cols=275 Identities=12% Similarity=0.049 Sum_probs=220.7
Q ss_pred EEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC--CCCeEEEEEcCC
Q 003445 23 KIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL--EEAKIVRTLTGH 100 (819)
Q Consensus 23 afsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl--~s~~~i~~l~~h 100 (819)
+|+| ++.++++++.|++|.+||..+++.+..+..+.. +.+++|+|++++|++++.|+.|.+||+ .+++.+..+. +
T Consensus 144 ~~~p-~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~ 220 (543)
T 1nir_A 144 DLDL-PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-I 220 (543)
T ss_dssp CCCG-GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-C
T ss_pred ccCC-CCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-c
Confidence 4788 668899999999999999999999999884333 899999999999999999999999999 8899988888 4
Q ss_pred CCCeEEEEEec----CCCEEEEEEC-CCcEEEEECCCCeEEEEEecC-----------CCCeEEEEEcCCCCE-EEEEEC
Q 003445 101 RSNCISVDFHP----FGEFFASGSL-DTNLKIWDIRKKGCIHTYKGH-----------TRGVNAIRFTPDGRW-VVSGGE 163 (819)
Q Consensus 101 ~~~I~sl~fsp----~g~~Lasgs~-Dg~I~IwDi~t~~~i~~~~~h-----------~~~I~sl~fspdg~~-L~sgs~ 163 (819)
......++|+| +|+++++++. +++|.+||..+++++.++..+ ...+..+.++|++.. +++...
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 55679999999 9999998884 899999999999999888652 236889999997665 556667
Q ss_pred CCeEEEEECCCCeEEE--EEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCeEEEEeCC----CCCCeeEEEEe
Q 003445 164 DNTVKLWDLTAGKLLH--DFKCHEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLETFELIGSAGP----ETSGVRCLTFN 236 (819)
Q Consensus 164 Dg~I~IwDl~t~~~i~--~~~~h~~~I~sl~fspdg~~Lasgs-~Dg~I~iwDl~~~~~l~~~~~----~~~~I~sl~fs 236 (819)
++.|.+||+.+++.+. .+. +...+..+.|+|+|++|++++ .+++|.+||+.+++++..+.. |.+....+ ++
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~ 378 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VH 378 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EE
T ss_pred CCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CC
Confidence 8999999998865443 343 556688999999999876655 588999999999999887754 43323333 47
Q ss_pred CC-CCEEEEEE--CCCEEEEEecC-------CceeeeeeccccceeEeE-ecCCCEEEEEE-------cCCeEEEEEecC
Q 003445 237 PD-GRTLLCGL--HESLKVFSWEP-------IRCHDAVDVGWSRLSDLN-VHEGKLLGCSY-------NQSCVGVWVVDI 298 (819)
Q Consensus 237 pd-g~~Lasgs--~d~I~Vwd~~~-------~~~~~~~~~~~s~i~~l~-~~dg~lLa~~~-------~Dg~V~IW~ld~ 298 (819)
|+ |.+++++. ++.|.||+.++ .++.+.+..+......+. .++++.|.++. .++.|.|||+++
T Consensus 379 p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~ 458 (543)
T 1nir_A 379 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN 458 (543)
T ss_dssp TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred CCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCC
Confidence 77 66666664 35799999998 778888876654433444 47899999987 377999999998
Q ss_pred Ccee
Q 003445 299 SRIE 302 (819)
Q Consensus 299 ~~~~ 302 (819)
.+..
T Consensus 459 ~~~~ 462 (543)
T 1nir_A 459 LDAK 462 (543)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 8754
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=3.2e-22 Score=240.76 Aligned_cols=278 Identities=14% Similarity=0.105 Sum_probs=213.3
Q ss_pred CCCEEEEEEeeCCCcEEEEEeC-CC-----eEEEEECCCCceEEEecCCCC------------------------CeEEE
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGE-DH-----KVNLWAIGKPNAILSLSGHTS------------------------GIDSV 65 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~-Dg-----~V~IWdl~~~~~i~~l~~h~~------------------------~V~~l 65 (819)
...|.+++|+| ++++|++++. |+ .|++||+.+++....+..+.. .|.++
T Consensus 36 ~~~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 45799999999 6667888877 88 899999999888777765433 38899
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCC
Q 003445 66 SFDSSEVLVAAGAASGTIKLWDLEEAK--IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT 143 (819)
Q Consensus 66 ~fspdg~~Lasgs~DG~I~IWDl~s~~--~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~ 143 (819)
+|+|||++|++++. +.|++||+.++. .+..+..|...+.+++|+|+|++|++++ ++.|++||+.+++.......+.
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCc
Confidence 99999999999886 999999999872 3445667888899999999999999987 5689999999887765544443
Q ss_pred CC----------------eEEEEEcCCCCEEEEEECCC---------------------------------eEEEEECCC
Q 003445 144 RG----------------VNAIRFTPDGRWVVSGGEDN---------------------------------TVKLWDLTA 174 (819)
Q Consensus 144 ~~----------------I~sl~fspdg~~L~sgs~Dg---------------------------------~I~IwDl~t 174 (819)
.. +..++|+|||++|++++.|+ .|++||+.+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 32 47899999999999988765 899999998
Q ss_pred -CeEEEEEe--cCCCCeEEEEEeCCCCEEEEEEC-----CCeEEEEECCCCeEEEEeCCCCC----CeeEEEEeCCCCEE
Q 003445 175 -GKLLHDFK--CHEGQIQCIDFHPHEFLLATGSA-----DRTVKFWDLETFELIGSAGPETS----GVRCLTFNPDGRTL 242 (819)
Q Consensus 175 -~~~i~~~~--~h~~~I~sl~fspdg~~Lasgs~-----Dg~I~iwDl~~~~~l~~~~~~~~----~I~sl~fspdg~~L 242 (819)
++...... .|...+..++| |||++|++++. +..|++||+.+++....+..+.. .+..++|+|||+++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~ 351 (741)
T 2ecf_A 273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSIL 351 (741)
T ss_dssp TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEE
T ss_pred CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEE
Confidence 87655433 36678999999 99999997764 56899999999987766544432 45689999999988
Q ss_pred EEEECC-CEEEEEecC-CceeeeeeccccceeEe--EecCCCEEEEE-EcCC--eEEEEEecC
Q 003445 243 LCGLHE-SLKVFSWEP-IRCHDAVDVGWSRLSDL--NVHEGKLLGCS-YNQS--CVGVWVVDI 298 (819)
Q Consensus 243 asgs~d-~I~Vwd~~~-~~~~~~~~~~~s~i~~l--~~~dg~lLa~~-~~Dg--~V~IW~ld~ 298 (819)
+++..+ ..+||.++. .+ ...+..+...+..+ ..++++.|+.+ ..++ .++||+++.
T Consensus 352 ~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 352 WSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp EEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred EEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 877665 478888873 33 33333333333333 44788777644 4454 899999875
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=1.9e-21 Score=208.79 Aligned_cols=268 Identities=12% Similarity=0.061 Sum_probs=211.1
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCCC-C-CeEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEcC-C----C
Q 003445 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHT-S-GIDSVSFDSSEVLVA-AGAASGTIKLWDLEEAKIVRTLTG-H----R 101 (819)
Q Consensus 30 ~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~-~-~V~~l~fspdg~~La-sgs~DG~I~IWDl~s~~~i~~l~~-h----~ 101 (819)
.+|++++.++.|.+||+.+++.+..+.... . .+.+++|+|++++++ ++..++.|.+||+.+++.+..+.. + .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 478999999999999999998888776332 2 588999999998664 555678999999999998877763 2 1
Q ss_pred CCeEEEEEecCCCEEEEEE------------CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 102 SNCISVDFHPFGEFFASGS------------LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (819)
Q Consensus 102 ~~I~sl~fsp~g~~Lasgs------------~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~I 169 (819)
..+..++|+|+|+++++++ .++.|.+||+.+++.+..+.. ...+.+++|+|+|++|+++ ++.|.+
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 2567899999999988886 579999999999988887764 4567889999999988888 689999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC------------------------eEEEEECCCCeEE-EEeC
Q 003445 170 WDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR------------------------TVKFWDLETFELI-GSAG 224 (819)
Q Consensus 170 wDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg------------------------~I~iwDl~~~~~l-~~~~ 224 (819)
||+.+++.+..+..+... ..+.|+|++..|+..+.++ .|.+||+.+++.. ..+.
T Consensus 159 ~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 237 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237 (337)
T ss_dssp EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred EECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC
Confidence 999999988777654311 1237899988766554332 4789999998764 2234
Q ss_pred CCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEEecCCcee
Q 003445 225 PETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIE 302 (819)
Q Consensus 225 ~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~ 302 (819)
.+...+.+++|+|+|++++++ ++.+.+||.++.+....+..+.........++|++|++++.++.|.+|+++.++..
T Consensus 238 ~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 238 IMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp ECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred CCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 455678899999999999988 67899999998887777765554443344478998888888999999999887754
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=3.3e-21 Score=201.67 Aligned_cols=250 Identities=11% Similarity=0.139 Sum_probs=190.3
Q ss_pred EeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CeEEEEEcCC-CCCeEEEEEecC
Q 003445 35 GGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE-AKIVRTLTGH-RSNCISVDFHPF 112 (819)
Q Consensus 35 gs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s-~~~i~~l~~h-~~~I~sl~fsp~ 112 (819)
++.|+.|++||+.+++... +..|...|.+++|+|++++|++++ ++.|.+||+.+ ++.......+ ...+.+++|+|+
T Consensus 18 ~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred CCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence 4678999999998877664 455889999999999999999976 88999999999 8877666665 367889999999
Q ss_pred CCEEEEEEC--CC--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-EEECCCeEEEEEC--CCCeEEEEEecCC
Q 003445 113 GEFFASGSL--DT--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV-SGGEDNTVKLWDL--TAGKLLHDFKCHE 185 (819)
Q Consensus 113 g~~Lasgs~--Dg--~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~-sgs~Dg~I~IwDl--~t~~~i~~~~~h~ 185 (819)
+++|++++. ++ .|..|+..++. ...+..+ ..+..++|+|+|++|+ ++..++.+.+|++ .+++ ...+..+.
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~ 172 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGE 172 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSS
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccCC
Confidence 999999983 34 45555555554 3444433 3489999999999887 7778999999985 3443 45566677
Q ss_pred CCeEEEEEeCCCCEEEEEE-CCCeEEEEECC-CCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC------------CEE
Q 003445 186 GQIQCIDFHPHEFLLATGS-ADRTVKFWDLE-TFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE------------SLK 251 (819)
Q Consensus 186 ~~I~sl~fspdg~~Lasgs-~Dg~I~iwDl~-~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d------------~I~ 251 (819)
..+.++.|+|++.+|+.++ .++.+.+|++. .+..+..+..+...+.++.|+|+|++|++++.+ .|.
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~ 252 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQ 252 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEE
Confidence 8899999999999888776 58899999886 455666777777889999999999999877543 388
Q ss_pred EEEecCCceeeeee--ccccceeEeEe-cCCCEEEEEEcCC
Q 003445 252 VFSWEPIRCHDAVD--VGWSRLSDLNV-HEGKLLGCSYNQS 289 (819)
Q Consensus 252 Vwd~~~~~~~~~~~--~~~s~i~~l~~-~dg~lLa~~~~Dg 289 (819)
+|+++..+...... .+...+..+.+ ++++.|++++.+.
T Consensus 253 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 253 LMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 88887766544332 22334444444 6888888776653
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=1.5e-21 Score=204.30 Aligned_cols=237 Identities=14% Similarity=0.156 Sum_probs=186.0
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC-CceEEEecCCC-CCeEEEEEcCCCCEEEEEEC--C--C
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-PNAILSLSGHT-SGIDSVSFDSSEVLVAAGAA--S--G 81 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~-~~~i~~l~~h~-~~V~~l~fspdg~~Lasgs~--D--G 81 (819)
+...+..|...|.+++|+| ++++|++++ ++.|++||+.+ ++....+..|. ..+.+++|+|++++|++++. + .
T Consensus 33 ~~~~~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 110 (297)
T 2ojh_A 33 KMRVVWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKS 110 (297)
T ss_dssp EEEEEEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSC
T ss_pred ceeeeccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcc
Confidence 3456777999999999999 566777776 78999999998 87777666663 67899999999999999983 3 4
Q ss_pred eEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEE-EEECCCcEEEEECCC-CeEEEEEecCCCCeEEEEEcCCCCEEE
Q 003445 82 TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFA-SGSLDTNLKIWDIRK-KGCIHTYKGHTRGVNAIRFTPDGRWVV 159 (819)
Q Consensus 82 ~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~La-sgs~Dg~I~IwDi~t-~~~i~~~~~h~~~I~sl~fspdg~~L~ 159 (819)
.|.+|++.+++ ...+..+ ..+..++|+|++++|+ +++.++.+++|+++. ......+..+...+.+++|+|+|++|+
T Consensus 111 ~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 188 (297)
T 2ojh_A 111 AIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIY 188 (297)
T ss_dssp EEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEE
T ss_pred eEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEE
Confidence 45555555555 3444433 3488999999999877 677899999998532 233456667788899999999999888
Q ss_pred EEE-CCCeEEEEECC-CCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC-----------CeEEEEECCCCeE--EEEeC
Q 003445 160 SGG-EDNTVKLWDLT-AGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD-----------RTVKFWDLETFEL--IGSAG 224 (819)
Q Consensus 160 sgs-~Dg~I~IwDl~-t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~D-----------g~I~iwDl~~~~~--l~~~~ 224 (819)
.++ .++.+.+|++. .+..+..+..+...+.++.|+|+|++|++++.+ +.|++||+.+++. +..+.
T Consensus 189 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 268 (297)
T 2ojh_A 189 FNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF 268 (297)
T ss_dssp EEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE
T ss_pred EEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC
Confidence 776 58899999886 455667777777889999999999999988865 5699999988765 44444
Q ss_pred CCCCCeeEEEEeCCCCEEEEEECC
Q 003445 225 PETSGVRCLTFNPDGRTLLCGLHE 248 (819)
Q Consensus 225 ~~~~~I~sl~fspdg~~Lasgs~d 248 (819)
.+...+.+++|+|+|++|++++.+
T Consensus 269 ~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 269 GGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp ESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred CCCcccccceECCCCCEEEEEEec
Confidence 677789999999999999877654
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=8.4e-22 Score=236.21 Aligned_cols=278 Identities=12% Similarity=0.088 Sum_probs=207.9
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCC---CeEEEEEcCCCCEEEEEECC---------CeEEE
Q 003445 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTS---GIDSVSFDSSEVLVAAGAAS---------GTIKL 85 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~---~V~~l~fspdg~~Lasgs~D---------G~I~I 85 (819)
.+.+++|+|+ ++++++ +.||.|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.|.+
T Consensus 18 ~~~~~~~spd-g~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 18 HDPEAKWISD-TEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCBSSS-SCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred cccccEEcCC-CcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 4778999995 556665 7899999999999988888887765 49999999999999998764 78899
Q ss_pred EECCCCeEEEEEc---CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCe----------------
Q 003445 86 WDLEEAKIVRTLT---GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGV---------------- 146 (819)
Q Consensus 86 WDl~s~~~i~~l~---~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I---------------- 146 (819)
||+.+++. ..+. +|...+..++|+|+|++|++++. +.|++||+.+++.......+...+
T Consensus 96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~ 173 (723)
T 1xfd_A 96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK 173 (723)
T ss_dssp EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred EECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence 99998876 3333 34445889999999999999986 799999999888776665444333
Q ss_pred --EEEEEcCCCCEEEEEECCC----------------------------------eEEEEECCCCeEEEEEecC------
Q 003445 147 --NAIRFTPDGRWVVSGGEDN----------------------------------TVKLWDLTAGKLLHDFKCH------ 184 (819)
Q Consensus 147 --~sl~fspdg~~L~sgs~Dg----------------------------------~I~IwDl~t~~~i~~~~~h------ 184 (819)
.+++|+|||++|++++.++ .|++||+.+++....+..+
T Consensus 174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~ 253 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR 253 (723)
T ss_dssp SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence 7899999999999887553 7999999988765566543
Q ss_pred CCCeEEEEEeCCCCEEEEEEC----CCeEEEEECCCCeEEEEeCC-CCCCe----eEEEEeCCCCEEEEE--ECC-----
Q 003445 185 EGQIQCIDFHPHEFLLATGSA----DRTVKFWDLETFELIGSAGP-ETSGV----RCLTFNPDGRTLLCG--LHE----- 248 (819)
Q Consensus 185 ~~~I~sl~fspdg~~Lasgs~----Dg~I~iwDl~~~~~l~~~~~-~~~~I----~sl~fspdg~~Lasg--s~d----- 248 (819)
...+..++|+|||++|++... +..|++||+.+++....+.. +...+ ..++|+|||+.|+.. ..+
T Consensus 254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 333 (723)
T 1xfd_A 254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGK 333 (723)
T ss_dssp SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSC
T ss_pred cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcc
Confidence 567899999999998877653 35799999999887655432 23333 378999999977753 333
Q ss_pred CEEEEEec--CCce---eeeee-ccccceeEe-EecCCCEEEEEEcC---CeEEEEEecCC
Q 003445 249 SLKVFSWE--PIRC---HDAVD-VGWSRLSDL-NVHEGKLLGCSYNQ---SCVGVWVVDIS 299 (819)
Q Consensus 249 ~I~Vwd~~--~~~~---~~~~~-~~~s~i~~l-~~~dg~lLa~~~~D---g~V~IW~ld~~ 299 (819)
..+||.|+ .... ...+. ..+.....+ ..++|+.|+..+.+ +.++||+++..
T Consensus 334 ~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 334 FYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp EEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred eeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 24566655 2222 33332 344443333 34889988876665 78999999864
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=1.1e-20 Score=226.16 Aligned_cols=277 Identities=12% Similarity=0.102 Sum_probs=207.6
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-----C
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE-----A 91 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s-----~ 91 (819)
..|.+++|+|+ +.++++ .++.|++||+.+++... +..+...+.+++|+|||++|+++ .++.|++||+.+ +
T Consensus 82 ~~v~~~~~spd-~~~~~~--~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF--TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp CCCEEEEETTT-TEEEEE--ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred cCceeEEECCC-CeEEEE--ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 57999999996 554444 35999999998876554 44567789999999999999885 689999999998 8
Q ss_pred eEEEEEcCCCCC--------------eEEEEEecCCCEEEEEE---------------------------------CCCc
Q 003445 92 KIVRTLTGHRSN--------------CISVDFHPFGEFFASGS---------------------------------LDTN 124 (819)
Q Consensus 92 ~~i~~l~~h~~~--------------I~sl~fsp~g~~Lasgs---------------------------------~Dg~ 124 (819)
+.......+... +.++.|+|+|++|++++ .+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 766554444333 47899999999999987 4468
Q ss_pred EEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEEe-c-CCC---CeEEEE
Q 003445 125 LKIWDIRKKGCIHTYK--GHTRGVNAIRFTPDGRWVVSGGEDN-----TVKLWDLTAGKLLHDFK-C-HEG---QIQCID 192 (819)
Q Consensus 125 I~IwDi~t~~~i~~~~--~h~~~I~sl~fspdg~~L~sgs~Dg-----~I~IwDl~t~~~i~~~~-~-h~~---~I~sl~ 192 (819)
|++||+.+++...... .|...+.+++|+|||++|++++.++ .|++||+.+++....+. . +.. .+..+.
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT 316 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence 9999999887655442 4667799999999999999987775 89999999983333332 2 222 246789
Q ss_pred EeC--CCCEEEEEECCCeEEEEECC-CCeEEEEeCCCCCCeeE-EEEeCCCCEEEEEECC-C---EEEEEecC--Cceee
Q 003445 193 FHP--HEFLLATGSADRTVKFWDLE-TFELIGSAGPETSGVRC-LTFNPDGRTLLCGLHE-S---LKVFSWEP--IRCHD 262 (819)
Q Consensus 193 fsp--dg~~Lasgs~Dg~I~iwDl~-~~~~l~~~~~~~~~I~s-l~fspdg~~Lasgs~d-~---I~Vwd~~~--~~~~~ 262 (819)
|+| +|++|++++.|+.+++|++. ++..+..+..+...+.. ++|+|+|+.|++++.+ + ..||.|+. .+. .
T Consensus 317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~ 395 (706)
T 2z3z_A 317 FLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-K 395 (706)
T ss_dssp ECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-E
T ss_pred eecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-e
Confidence 999 99999999999999999886 67777777777777876 7999999988766543 2 57776653 332 2
Q ss_pred eeeccccceeEeEe-cCCCEEEEEEcC----CeEEEEEecCCc
Q 003445 263 AVDVGWSRLSDLNV-HEGKLLGCSYNQ----SCVGVWVVDISR 300 (819)
Q Consensus 263 ~~~~~~s~i~~l~~-~dg~lLa~~~~D----g~V~IW~ld~~~ 300 (819)
.+. +...+..+.+ ++|+.++.+..+ +.|++|+++.++
T Consensus 396 ~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 396 DLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 222 2223444444 788888766544 569999998876
No 140
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=1.2e-20 Score=226.89 Aligned_cols=277 Identities=7% Similarity=0.011 Sum_probs=209.5
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc--eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003445 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN--AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVR 95 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~--~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~ 95 (819)
.|.+++|+| ++++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++ ++.|++||+.+++...
T Consensus 110 ~v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 110 GIVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp ESCCCEECT-TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred CcceeEECC-CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 388999999 5666777765 999999998773 4455777888999999999999999887 5799999999988776
Q ss_pred EEcCCCCC----------------eEEEEEecCCCEEEEEECCC---------------------------------cEE
Q 003445 96 TLTGHRSN----------------CISVDFHPFGEFFASGSLDT---------------------------------NLK 126 (819)
Q Consensus 96 ~l~~h~~~----------------I~sl~fsp~g~~Lasgs~Dg---------------------------------~I~ 126 (819)
....+... +.+++|+|||++|++++.|+ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 55544432 37799999999999988765 799
Q ss_pred EEECCC-CeEEEEEe--cCCCCeEEEEEcCCCCEEEEEEC-----CCeEEEEECCCCeEEEEEecCCC----CeEEEEEe
Q 003445 127 IWDIRK-KGCIHTYK--GHTRGVNAIRFTPDGRWVVSGGE-----DNTVKLWDLTAGKLLHDFKCHEG----QIQCIDFH 194 (819)
Q Consensus 127 IwDi~t-~~~i~~~~--~h~~~I~sl~fspdg~~L~sgs~-----Dg~I~IwDl~t~~~i~~~~~h~~----~I~sl~fs 194 (819)
+||+.+ ++...... .|...+..++| |||++|++++. +..|++||+.+++....+..+.. .+..++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999988 77655443 36778999999 99999997764 56899999999988777665543 45689999
Q ss_pred CCCCEEEEEECCCeEEEEECC-CCeEEEEeCCCCCCeeEE-EEeCCCCEEEE-EECC---CEEEEEecC-Cceeeeeecc
Q 003445 195 PHEFLLATGSADRTVKFWDLE-TFELIGSAGPETSGVRCL-TFNPDGRTLLC-GLHE---SLKVFSWEP-IRCHDAVDVG 267 (819)
Q Consensus 195 pdg~~Lasgs~Dg~I~iwDl~-~~~~l~~~~~~~~~I~sl-~fspdg~~Las-gs~d---~I~Vwd~~~-~~~~~~~~~~ 267 (819)
|||+++++++.||.++||.+. .+. ...+..+...+..+ .|+|+|+.|+. +..+ .++||+++. +.....+..
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~- 423 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK- 423 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-
T ss_pred CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-
Confidence 999999999999987777665 345 67777777788887 59999998764 4444 589999875 333333333
Q ss_pred ccceeEeE-ecCCCEEEEEEcC----CeEEEEEecCCc
Q 003445 268 WSRLSDLN-VHEGKLLGCSYNQ----SCVGVWVVDISR 300 (819)
Q Consensus 268 ~s~i~~l~-~~dg~lLa~~~~D----g~V~IW~ld~~~ 300 (819)
...+..+. .++|+.|+....+ ..+.+|+.+.+.
T Consensus 424 ~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~ 461 (741)
T 2ecf_A 424 APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGEK 461 (741)
T ss_dssp SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSCE
T ss_pred CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCCe
Confidence 22233333 3788888766543 467777775543
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=1e-19 Score=195.95 Aligned_cols=249 Identities=14% Similarity=0.173 Sum_probs=188.3
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce-EEEecCCCCCeEEEEEcCCCCEEEEEECCC---eEE
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA-ILSLSGHTSGIDSVSFDSSEVLVAAGAASG---TIK 84 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~-i~~l~~h~~~V~~l~fspdg~~Lasgs~DG---~I~ 84 (819)
+..+..+...+ +++|+|++..+++++..++.|.+||+.+++. ...+..+..+..+++|+|++++|+++..++ .|.
T Consensus 33 ~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~ 111 (331)
T 3u4y_A 33 LNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQ 111 (331)
T ss_dssp EEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEE
T ss_pred eeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEE
Confidence 34555566667 9999996555556666689999999998887 777776776666699999999998655553 899
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEE-EECCCc-EEEEECCCCeEEE----EEecCCCCeEEEEEcCCCCEE
Q 003445 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFAS-GSLDTN-LKIWDIRKKGCIH----TYKGHTRGVNAIRFTPDGRWV 158 (819)
Q Consensus 85 IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Las-gs~Dg~-I~IwDi~t~~~i~----~~~~h~~~I~sl~fspdg~~L 158 (819)
+||+.+++.+..+..+ ....+++|+|+|+++++ ...++. |.+|++.....+. ...........++|+|+|+++
T Consensus 112 v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l 190 (331)
T 3u4y_A 112 SYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFA 190 (331)
T ss_dssp EEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEE
T ss_pred EEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEE
Confidence 9999999998887754 45689999999985554 455688 9999988644331 122344568999999999976
Q ss_pred EEEE-CCCeEEEEECCCCeE---EEEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCeE--EEEeCCC----C
Q 003445 159 VSGG-EDNTVKLWDLTAGKL---LHDFKCHEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLETFEL--IGSAGPE----T 227 (819)
Q Consensus 159 ~sgs-~Dg~I~IwDl~t~~~---i~~~~~h~~~I~sl~fspdg~~Lasgs-~Dg~I~iwDl~~~~~--l~~~~~~----~ 227 (819)
++++ .++.|.+||+.+++. +..+.. ...+..++|+|+|++|++++ .++.|.+||+.+++. +..+... .
T Consensus 191 ~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 269 (331)
T 3u4y_A 191 FVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDP 269 (331)
T ss_dssp EEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCC
T ss_pred EEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCC
Confidence 6555 588999999999887 777764 46678999999999776665 477899999999887 4333222 2
Q ss_pred C---CeeEEEEeCCCCEEEEEECC--CEEEEEecCCce
Q 003445 228 S---GVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRC 260 (819)
Q Consensus 228 ~---~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~ 260 (819)
. ....++|+|||++|++++.+ .+.+|++.....
T Consensus 270 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 270 RPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred CCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 2 22568999999999876654 599999876543
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=9.7e-20 Score=195.86 Aligned_cols=242 Identities=15% Similarity=0.251 Sum_probs=179.9
Q ss_pred EeccCCCEEEEEEeeCCCcEEEEEeCC-CeEEEEECC--CCc--eEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCeEEE
Q 003445 12 FVAHSSTVNCLKIGRKSSRVLVTGGED-HKVNLWAIG--KPN--AILSLSGHTSGIDSVSFDSSEVLVAAGAA-SGTIKL 85 (819)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~~Latgs~D-g~V~IWdl~--~~~--~i~~l~~h~~~V~~l~fspdg~~Lasgs~-DG~I~I 85 (819)
...|...+.+++|+| ++++|++++.+ +.|.+|++. +++ .+..+..+. .+.+++|+|++++|++++. ++.|.+
T Consensus 33 ~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~ 110 (343)
T 1ri6_A 33 VVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSV 110 (343)
T ss_dssp EEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEE
T ss_pred eEecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEE
Confidence 345788899999999 55566666665 999999997 444 344455444 7899999999998877665 889999
Q ss_pred EECC---CCeEEEEEcCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCC-CeEEE----EEec-CCCCeEEEEEcCCC
Q 003445 86 WDLE---EAKIVRTLTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRK-KGCIH----TYKG-HTRGVNAIRFTPDG 155 (819)
Q Consensus 86 WDl~---s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs-~Dg~I~IwDi~t-~~~i~----~~~~-h~~~I~sl~fspdg 155 (819)
||+. ..+.+..+..+ ..+.+++|+|+++++++++ .++.|++||+.+ ++... .+.. ....+..++|+|+|
T Consensus 111 ~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg 189 (343)
T 1ri6_A 111 TRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE 189 (343)
T ss_dssp EEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred EECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCC
Confidence 9994 44555555543 4588999999999888887 899999999987 54432 2232 34578899999999
Q ss_pred CEEEEEE-CCCeEEEEECCC--CeE--EEEEec---C---CCCeEEEEEeCCCCEEEEEE-CCCeEEEEECC----CCeE
Q 003445 156 RWVVSGG-EDNTVKLWDLTA--GKL--LHDFKC---H---EGQIQCIDFHPHEFLLATGS-ADRTVKFWDLE----TFEL 219 (819)
Q Consensus 156 ~~L~sgs-~Dg~I~IwDl~t--~~~--i~~~~~---h---~~~I~sl~fspdg~~Lasgs-~Dg~I~iwDl~----~~~~ 219 (819)
+++++++ .++.|.+||+.. ++. ...+.. . ...+..++|+|+|++|+++. .++.|.+||+. ..+.
T Consensus 190 ~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~ 269 (343)
T 1ri6_A 190 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK 269 (343)
T ss_dssp SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEE
Confidence 9876665 789999999953 432 223321 1 23567899999998887554 78999999998 3445
Q ss_pred EEEeCCCCCCeeEEEEeCCCCEEEEEEC--CCEEEEEecC
Q 003445 220 IGSAGPETSGVRCLTFNPDGRTLLCGLH--ESLKVFSWEP 257 (819)
Q Consensus 220 l~~~~~~~~~I~sl~fspdg~~Lasgs~--d~I~Vwd~~~ 257 (819)
+..+..+.. +.+++|+|+|++|+++.. +.+.+|+++.
T Consensus 270 ~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 270 EGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp EEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred eeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 555555444 889999999999988863 4699997764
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=1.8e-19 Score=195.10 Aligned_cols=230 Identities=12% Similarity=0.093 Sum_probs=192.3
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCC---------eEEEEEcCCCCEEEEEE--CCCeEE
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSG---------IDSVSFDSSEVLVAAGA--ASGTIK 84 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~---------V~~l~fspdg~~Lasgs--~DG~I~ 84 (819)
...+.+++|+|++..+++++..++.|.+||..+++.+..+..+... +.+++|+|+++++++++ .++.|.
T Consensus 88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~ 167 (353)
T 3vgz_A 88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIW 167 (353)
T ss_dssp SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEE
T ss_pred CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEE
Confidence 4457889999966667777777899999999999988888765432 78999999999877776 478999
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEec----CCCCeEEEEEcCCCCEEEE
Q 003445 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG----HTRGVNAIRFTPDGRWVVS 160 (819)
Q Consensus 85 IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~----h~~~I~sl~fspdg~~L~s 160 (819)
+||+.+++.+..+..+...+.+++|+|+++++++++.++.|.+||..+++.+..+.. +...+..++|+|+|+++++
T Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 247 (353)
T 3vgz_A 168 VVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFI 247 (353)
T ss_dssp EEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEE
T ss_pred EEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEE
Confidence 999999999988886666688999999999999999999999999999998887764 4556888999999998877
Q ss_pred EECC-CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCC
Q 003445 161 GGED-NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLETFELIGSAGPETSGVRCLTFNPD 238 (819)
Q Consensus 161 gs~D-g~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs-~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspd 238 (819)
++.+ +.|.+||..+++.+..+.... ...++|+|+++++++++ .++.|.+||..+++.+..+... ..+.+++|+|+
T Consensus 248 ~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~d 324 (353)
T 3vgz_A 248 TDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSAD 324 (353)
T ss_dssp EESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTT
T ss_pred EeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCC
Confidence 7654 899999999999888887543 25799999999666665 6899999999999988877654 46799999999
Q ss_pred CCEEEEEECC
Q 003445 239 GRTLLCGLHE 248 (819)
Q Consensus 239 g~~Lasgs~d 248 (819)
|++|+++..+
T Consensus 325 g~~l~v~~~~ 334 (353)
T 3vgz_A 325 GKTLYVSVKQ 334 (353)
T ss_dssp SCEEEEEEEC
T ss_pred CCEEEEEEcc
Confidence 9988766544
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=2.1e-19 Score=192.74 Aligned_cols=243 Identities=12% Similarity=0.077 Sum_probs=193.5
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecC-C----CCCeEEEEEcCCCCEEEEEE------------CC
Q 003445 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSG-H----TSGIDSVSFDSSEVLVAAGA------------AS 80 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~-h----~~~V~~l~fspdg~~Lasgs------------~D 80 (819)
.+.+++|+|++..+++++..++.|.+||+.+++.+..+.. + ...+.+++|+|++++|++++ .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 5889999996666677777889999999999988876663 2 22678899999999988886 57
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 003445 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVS 160 (819)
Q Consensus 81 G~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~s 160 (819)
+.|.+||+.+++.+..+.. ...+.+++|+|++++|+++ ++.|++||+.+++.+..+..+.. ...+.|+|+|.+++.
T Consensus 115 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~ 190 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWN 190 (337)
T ss_dssp CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCC
T ss_pred ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEee
Confidence 9999999999998887764 4567789999999988887 68999999999998877765441 113378999887765
Q ss_pred EECCC------------------------eEEEEECCCCeEE-EEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECC
Q 003445 161 GGEDN------------------------TVKLWDLTAGKLL-HDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE 215 (819)
Q Consensus 161 gs~Dg------------------------~I~IwDl~t~~~i-~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~ 215 (819)
++..+ .|.+||+.+++.. ..+..+...+.+++|+|++++|+++ ++.|++||+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~ 268 (337)
T 1pby_B 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLE 268 (337)
T ss_dssp CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETT
T ss_pred eccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECC
Confidence 54332 4789999998764 2234466678899999999999988 7999999999
Q ss_pred CCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeecc
Q 003445 216 TFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVG 267 (819)
Q Consensus 216 ~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~ 267 (819)
+++.+..+... ..+.+++|+|+|++|++++.+ .|.+|+.++.+....+..+
T Consensus 269 ~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 269 KNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp TTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred CCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 99988777543 457899999999988877554 6999999988877666544
No 145
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=6e-20 Score=230.53 Aligned_cols=283 Identities=14% Similarity=0.082 Sum_probs=226.5
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC-CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~-~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
+...+.+|...+.++.|+++ .++++++.|+.+.||.+.. +.....+..|. .+..++|+|+|++|+.+ .++.|++|
T Consensus 195 ~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~ 270 (1045)
T 1k32_A 195 AFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIF 270 (1045)
T ss_dssp EEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEE
T ss_pred CeEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEe
Confidence 34566889999999999973 7788888899999998743 44555666565 46778999999988887 48999999
Q ss_pred ECCCCeEEEEEcC-----------CCCCeEEEEEe-cCCCEEEEEECCCcEEEEECCCCeEEEEEecCCC-CeEEEEEcC
Q 003445 87 DLEEAKIVRTLTG-----------HRSNCISVDFH-PFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTR-GVNAIRFTP 153 (819)
Q Consensus 87 Dl~s~~~i~~l~~-----------h~~~I~sl~fs-p~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~-~I~sl~fsp 153 (819)
|+...+.. .+.+ |...+.+++|+ |+|++|++++ ++.|++|++..+... .+..|.. .+..++|+
T Consensus 271 d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s- 346 (1045)
T 1k32_A 271 NPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD- 346 (1045)
T ss_dssp CTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-
T ss_pred cCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-
Confidence 99555443 5554 33468899999 9999999988 789999999887654 3566777 89999999
Q ss_pred CCCEEEEEECCCeEE-EEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeE
Q 003445 154 DGRWVVSGGEDNTVK-LWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRC 232 (819)
Q Consensus 154 dg~~L~sgs~Dg~I~-IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~s 232 (819)
||+.|++++.++.|. +||+.+++... +..|...+..++|+|+|++|++++.++.|++||+.+++.......|...+.+
T Consensus 347 dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~ 425 (1045)
T 1k32_A 347 TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD 425 (1045)
T ss_dssp SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCC
T ss_pred CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccc
Confidence 999999999988899 99998876544 3467788999999999999999999999999999999988777778888999
Q ss_pred EEEeCCCCEEEEEEC-C----------CEEEEEecCCceeeeeeccccceeEe-EecCCCEEEEEEcCCeEEEEEecCCc
Q 003445 233 LTFNPDGRTLLCGLH-E----------SLKVFSWEPIRCHDAVDVGWSRLSDL-NVHEGKLLGCSYNQSCVGVWVVDISR 300 (819)
Q Consensus 233 l~fspdg~~Lasgs~-d----------~I~Vwd~~~~~~~~~~~~~~s~i~~l-~~~dg~lLa~~~~Dg~V~IW~ld~~~ 300 (819)
++|+|||++|++++. + .+++|++.+.+..... .+......+ ..++|+.|++++.++...+|+.....
T Consensus 426 ~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~-~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~ 504 (1045)
T 1k32_A 426 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN 504 (1045)
T ss_dssp EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred eEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEee-CCCcccCCceEcCCCCEEEEEecccCCcCcchhccc
Confidence 999999999987653 2 5899999887743333 333333334 44899999999999988889765433
No 146
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=1.2e-19 Score=227.85 Aligned_cols=275 Identities=9% Similarity=0.063 Sum_probs=217.6
Q ss_pred cCCCEEEEEEe-eCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCC-CeEEEEEcCCCCEEEEEECCCeEE-EEECCCC
Q 003445 15 HSSTVNCLKIG-RKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTS-GIDSVSFDSSEVLVAAGAASGTIK-LWDLEEA 91 (819)
Q Consensus 15 H~~~V~~lafs-p~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~-~V~~l~fspdg~~Lasgs~DG~I~-IWDl~s~ 91 (819)
|...|.+++|+ | +++.|++++ ++.|.+|++..+... .+..|.. .+.+++|+ +++.|++++.++.+. +||+..+
T Consensus 294 ~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~ 369 (1045)
T 1k32_A 294 SIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG 369 (1045)
T ss_dssp ECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC
T ss_pred cccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC
Confidence 55679999999 9 555566666 789999999877654 4667777 89999999 999999999888899 9999887
Q ss_pred eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC------
Q 003445 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN------ 165 (819)
Q Consensus 92 ~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg------ 165 (819)
+... +.+|...+..++|+|+|++|++++.++.|++||+.+++....+..|...+.+++|+|||++|++++.++
T Consensus 370 ~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~ 448 (1045)
T 1k32_A 370 KAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG 448 (1045)
T ss_dssp CEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred CceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccC
Confidence 7654 447888999999999999999999999999999999998888878999999999999999999887654
Q ss_pred ----eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeE----------------------
Q 003445 166 ----TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL---------------------- 219 (819)
Q Consensus 166 ----~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~---------------------- 219 (819)
.|++||+.+++ +..+..|...+..++|+|+|++|++++.++...+|+......
T Consensus 449 ~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1045)
T 1k32_A 449 YVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 527 (1045)
T ss_dssp CCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred CCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccc
Confidence 89999999887 666777888899999999999999999887777776433221
Q ss_pred ---------------------EEEeCCCCCCeeEEEEeCCCCEEEE------------EECCC--EEEEEecCCceeeee
Q 003445 220 ---------------------IGSAGPETSGVRCLTFNPDGRTLLC------------GLHES--LKVFSWEPIRCHDAV 264 (819)
Q Consensus 220 ---------------------l~~~~~~~~~I~sl~fspdg~~Las------------gs~d~--I~Vwd~~~~~~~~~~ 264 (819)
+..+..+.+.+..++|+|||.++++ +..+. +.+||+.+.+.....
T Consensus 528 ~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 607 (1045)
T 1k32_A 528 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK 607 (1045)
T ss_dssp CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE
T ss_pred cCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee
Confidence 1122335567889999999987775 11223 555566565543332
Q ss_pred eccccceeEeE-ecCCCEEEEEEcCCeEEEEEecCCc
Q 003445 265 DVGWSRLSDLN-VHEGKLLGCSYNQSCVGVWVVDISR 300 (819)
Q Consensus 265 ~~~~s~i~~l~-~~dg~lLa~~~~Dg~V~IW~ld~~~ 300 (819)
..+..+. .+||+.|+++..+ .|++|++..++
T Consensus 608 ----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 608 ----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp ----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred ----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 3333443 4899999988766 89999998887
No 147
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=1.1e-19 Score=206.29 Aligned_cols=238 Identities=13% Similarity=0.173 Sum_probs=178.9
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC----------ceEEE-----ecCCCCCeEEEEEcCCCCEEE----
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----------NAILS-----LSGHTSGIDSVSFDSSEVLVA---- 75 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~----------~~i~~-----l~~h~~~V~~l~fspdg~~La---- 75 (819)
+...++++++++ .+.++++++.++ ++||+.... ..+.. ...|...|.+++|+|++++|+
T Consensus 35 ~~~~~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~ 112 (434)
T 2oit_A 35 PKERSSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMM 112 (434)
T ss_dssp CCSCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEE
T ss_pred CCCCccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEe
Confidence 344689999999 556788888887 888875210 11111 113567899999999999999
Q ss_pred EEECCCeEEEEECCCC--------e---EEEEEcCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCeEEEEEecCC
Q 003445 76 AGAASGTIKLWDLEEA--------K---IVRTLTGHRSNCISVDFHPF-GEFFASGSLDTNLKIWDIRKKGCIHTYKGHT 143 (819)
Q Consensus 76 sgs~DG~I~IWDl~s~--------~---~i~~l~~h~~~I~sl~fsp~-g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~ 143 (819)
+|+.|+.|++||+.++ + .+..+.+|...|.+++|+|+ +.+|++++.||+|++||++++..+....+|.
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~ 192 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPST 192 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGG
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCC
Confidence 7888999999998654 1 25566789999999999998 7899999999999999999998777777889
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC-------CCeEEEEEeCCCCEEEEEE-CCC------eE
Q 003445 144 RGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE-------GQIQCIDFHPHEFLLATGS-ADR------TV 209 (819)
Q Consensus 144 ~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~-------~~I~sl~fspdg~~Lasgs-~Dg------~I 209 (819)
..|.+++|+|+|++|++|+.||.|++||.+ ++....+..|. ..|.+++|++++.++++.+ .|| .+
T Consensus 193 ~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v 271 (434)
T 2oit_A 193 VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDV 271 (434)
T ss_dssp GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEE
T ss_pred CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCce
Confidence 999999999999999999999999999998 66666655432 2799999999988776543 443 38
Q ss_pred EEEECCCCe-----EEEEeC-------CCCCCeeEEEEeCCCCEEEEEECC--CEEEEEe
Q 003445 210 KFWDLETFE-----LIGSAG-------PETSGVRCLTFNPDGRTLLCGLHE--SLKVFSW 255 (819)
Q Consensus 210 ~iwDl~~~~-----~l~~~~-------~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~ 255 (819)
++||+...+ ....+. ....+...+.+-++.+++++++.. .+.|+..
T Consensus 272 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 272 VMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp EEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred EEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 999997642 222221 122233445555888888877654 3555554
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=1.1e-19 Score=213.04 Aligned_cols=268 Identities=13% Similarity=0.092 Sum_probs=194.7
Q ss_pred CCCEEEEEEeeCCCcEEEEEeC-CCeEEEEECCCCceEEEecCCC-CCeEEEEEcCCCCEEEEEEC---CCeEEEEECCC
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGE-DHKVNLWAIGKPNAILSLSGHT-SGIDSVSFDSSEVLVAAGAA---SGTIKLWDLEE 90 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~-Dg~V~IWdl~~~~~i~~l~~h~-~~V~~l~fspdg~~Lasgs~---DG~I~IWDl~s 90 (819)
..+|++++|+|| ++.||.++. ||+++||++..++. ..+..|. ..+..+.|+|| +++++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~D-G~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVD-GDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCC-CCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 568999999994 555666555 99999999865554 4555555 68999999999 77777765 45455654432
Q ss_pred ---CeEEEEEcCCCCCeEEEEEecCCCE-EEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC--
Q 003445 91 ---AKIVRTLTGHRSNCISVDFHPFGEF-FASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED-- 164 (819)
Q Consensus 91 ---~~~i~~l~~h~~~I~sl~fsp~g~~-Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~D-- 164 (819)
+... .+..+ ..+...+|+|+++. +++.+.++.+.+||+.+++.......+. .+++|+|||++|++++.+
T Consensus 98 ~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 98 SRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp TSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEET
T ss_pred cCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCC
Confidence 3322 34322 23446788888863 3344445556699999887665554333 789999999999988877
Q ss_pred --CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCC--eEEEEECCCCeEEEEeCCCCCCeeEEE------
Q 003445 165 --NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR--TVKFWDLETFELIGSAGPETSGVRCLT------ 234 (819)
Q Consensus 165 --g~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg--~I~iwDl~~~~~l~~~~~~~~~I~sl~------ 234 (819)
+.|++||+.+++.. .+..|.+.+..++|+|||++|+++..++ .|++||+.+++.. .+..+...+..+.
T Consensus 173 ~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3o4h_A 173 GRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITW 250 (582)
T ss_dssp TEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEE
T ss_pred CCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccc
Confidence 78999999988765 5667888899999999999999888888 8999999999887 7777766677777
Q ss_pred --EeCCCCEEEEEECC-CEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCe-EEEEEecC
Q 003445 235 --FNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSC-VGVWVVDI 298 (819)
Q Consensus 235 --fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~-V~IW~ld~ 298 (819)
|+|||.+++++..+ .+++|++ ++..... ...+..+.+.+++++++++.+.. -.+|.++.
T Consensus 251 ~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~---~~~v~~~~~sdg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 251 LGYLPDGRLAVVARREGRSAVFID--GERVEAP---QGNHGRVVLWRGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EEECTTSCEEEEEEETTEEEEEET--TEEECCC---SSEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred eeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC---CCceEEEEecCCEEEEEEcCCCCCCeEEEEcC
Confidence 99999888877655 5899998 5544322 23444555558888887777644 44454443
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.84 E-value=3.3e-19 Score=192.50 Aligned_cols=276 Identities=12% Similarity=0.026 Sum_probs=195.4
Q ss_pred EEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCC-CCeEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEc
Q 003445 21 CLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHT-SGIDSVSFDSSEVLVA-AGAASGTIKLWDLEEAKIVRTLT 98 (819)
Q Consensus 21 ~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~-~~V~~l~fspdg~~La-sgs~DG~I~IWDl~s~~~i~~l~ 98 (819)
.+++++ ++.++++++.++.|.+||..+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++.+..+.
T Consensus 4 g~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 345666 77889999999999999999999888877543 2578999999998665 44568999999999999887776
Q ss_pred CCC------CCeEEEEEecCCCEEEEEECC------------CcEEEEECCCCe---EEEEEecCCCCeEEEEEcCCCCE
Q 003445 99 GHR------SNCISVDFHPFGEFFASGSLD------------TNLKIWDIRKKG---CIHTYKGHTRGVNAIRFTPDGRW 157 (819)
Q Consensus 99 ~h~------~~I~sl~fsp~g~~Lasgs~D------------g~I~IwDi~t~~---~i~~~~~h~~~I~sl~fspdg~~ 157 (819)
.+. ..+..++|+|+|++|++++.+ +.|.+||+.+++ .+..+. +...+.+++|+|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS- 160 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-
Confidence 432 236789999999999998865 899999998743 334444 344688999999999
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEecCCC------------------------CeEEEEEeCCCCEEEEEE-CCCeEEEE
Q 003445 158 VVSGGEDNTVKLWDLTAGKLLHDFKCHEG------------------------QIQCIDFHPHEFLLATGS-ADRTVKFW 212 (819)
Q Consensus 158 L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~------------------------~I~sl~fspdg~~Lasgs-~Dg~I~iw 212 (819)
+++++ +.|.+||+.+++.+..+..+.. ....+++++++....... ....+..+
T Consensus 161 l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 238 (349)
T 1jmx_B 161 LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 238 (349)
T ss_dssp EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence 66553 3499999999998877764320 234566665542110000 00112224
Q ss_pred ECCCCeEE-EEeCCCCCCeeEEEEeC-CCCEEEEEECCCEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCe
Q 003445 213 DLETFELI-GSAGPETSGVRCLTFNP-DGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSC 290 (819)
Q Consensus 213 Dl~~~~~l-~~~~~~~~~I~sl~fsp-dg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~ 290 (819)
|..+++.. ..+......+..++|+| +|++++++ .+.|.+||+.+.+....+..+.........++++.|+++..++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 317 (349)
T 1jmx_B 239 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND 317 (349)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSE
T ss_pred eccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCe
Confidence 44443321 11222456788999999 99999988 77899999999888777765544433333478888888888899
Q ss_pred EEEEEecCCcee
Q 003445 291 VGVWVVDISRIE 302 (819)
Q Consensus 291 V~IW~ld~~~~~ 302 (819)
|.+|++++.+..
T Consensus 318 v~v~d~~~~~~~ 329 (349)
T 1jmx_B 318 LAVFNPDTLEKV 329 (349)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEecccccee
Confidence 999999887654
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=2.2e-18 Score=187.54 Aligned_cols=266 Identities=12% Similarity=0.157 Sum_probs=182.8
Q ss_pred CCCeEEEEECC--CCceEE-EecCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCe--EEEEEcCCCCCeEEEE
Q 003445 37 EDHKVNLWAIG--KPNAIL-SLSGHTSGIDSVSFDSSEVLVAAGAA---SGTIKLWDLEEAK--IVRTLTGHRSNCISVD 108 (819)
Q Consensus 37 ~Dg~V~IWdl~--~~~~i~-~l~~h~~~V~~l~fspdg~~Lasgs~---DG~I~IWDl~s~~--~i~~l~~h~~~I~sl~ 108 (819)
.++.|.+|++. +++... ....+...+..++|+|+++ |++++. ++.|.+||+.+++ .+..+..+...+..++
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence 34567777664 454432 2334567788899999999 555544 6899999998776 4444455677788999
Q ss_pred EecCCCEEEEEE-CCCcEEEEECCC-C--eEEEEEecC---------CCCeEEEEEcCCCCEEEEEECCCeEEEEECC-C
Q 003445 109 FHPFGEFFASGS-LDTNLKIWDIRK-K--GCIHTYKGH---------TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT-A 174 (819)
Q Consensus 109 fsp~g~~Lasgs-~Dg~I~IwDi~t-~--~~i~~~~~h---------~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~-t 174 (819)
|+|+|++|++++ .++.|.+||+.. + ..+..+... ...+.+++|+|+|+++++...++.|.+||+. +
T Consensus 93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~ 172 (347)
T 3hfq_A 93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA 172 (347)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence 999999988888 679999999963 2 233333321 2248899999999966666678899999998 5
Q ss_pred CeEEE--EEecC-CCCeEEEEEeCCCCEEEE-EECCCeEEEEECCC--CeE--EEEeCCCC------CCeeEEEEeCCCC
Q 003445 175 GKLLH--DFKCH-EGQIQCIDFHPHEFLLAT-GSADRTVKFWDLET--FEL--IGSAGPET------SGVRCLTFNPDGR 240 (819)
Q Consensus 175 ~~~i~--~~~~h-~~~I~sl~fspdg~~Las-gs~Dg~I~iwDl~~--~~~--l~~~~~~~------~~I~sl~fspdg~ 240 (819)
++... .+..+ ...+..++|+|+|++|++ +..++.|.+|++.. ++. +..+.... ..+..++|+|||+
T Consensus 173 g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~ 252 (347)
T 3hfq_A 173 GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH 252 (347)
T ss_dssp SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence 54332 22322 336788999999996666 45688999999874 543 22332221 3488999999999
Q ss_pred EEEEEE--CCCEEEEEecCC---ceeeeeeccccceeEeEe-cCCCEEEEEEcC-CeEEEEEec--CCceee
Q 003445 241 TLLCGL--HESLKVFSWEPI---RCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQ-SCVGVWVVD--ISRIEP 303 (819)
Q Consensus 241 ~Lasgs--~d~I~Vwd~~~~---~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~D-g~V~IW~ld--~~~~~p 303 (819)
+|+++. ++.+.+|+++.. +....+..+......+.+ ++|++|+++..+ +.|.+|+++ ++++..
T Consensus 253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 886543 346999999732 334444443333444544 789988877754 899999665 455553
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=2e-18 Score=187.93 Aligned_cols=245 Identities=13% Similarity=0.203 Sum_probs=178.4
Q ss_pred EeccCCCEEEEEEeeCCCcEEEEEeC--CCeEEEEECCCCc--eEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEE
Q 003445 12 FVAHSSTVNCLKIGRKSSRVLVTGGE--DHKVNLWAIGKPN--AILSLSGHTSGIDSVSFDSSEVLVAAGA-ASGTIKLW 86 (819)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~~Latgs~--Dg~V~IWdl~~~~--~i~~l~~h~~~V~~l~fspdg~~Lasgs-~DG~I~IW 86 (819)
...+...+..++|+| ++++++++.. ++.|.+|++.++. .+..+..+...+..++|+|++++|++++ .++.|.+|
T Consensus 35 ~~~~~~~p~~~a~sp-dg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 35 LLAATQNPTYLALSA-KDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EEEECSCCCCEEECT-TCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeeccCCcceEEEcc-CCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 345667788899999 5555555432 6899999997665 4444455778899999999999888887 67999999
Q ss_pred ECC-CC--eEEEEEcC---------CCCCeEEEEEecCCCEEEEEECCCcEEEEECC-CCeEEE--EEecC-CCCeEEEE
Q 003445 87 DLE-EA--KIVRTLTG---------HRSNCISVDFHPFGEFFASGSLDTNLKIWDIR-KKGCIH--TYKGH-TRGVNAIR 150 (819)
Q Consensus 87 Dl~-s~--~~i~~l~~---------h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~-t~~~i~--~~~~h-~~~I~sl~ 150 (819)
++. ++ ..+..+.. +...+.+++|+|+|+++++...++.|++||+. +++... .+..+ ......++
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~ 193 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV 193 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE
Confidence 996 33 33333332 12348899999999966666678899999998 454322 22222 33678899
Q ss_pred EcCCCCEEEEE-ECCCeEEEEECCC--CeE--EEEEecCC------CCeEEEEEeCCCCEE-EEEECCCeEEEEECC---
Q 003445 151 FTPDGRWVVSG-GEDNTVKLWDLTA--GKL--LHDFKCHE------GQIQCIDFHPHEFLL-ATGSADRTVKFWDLE--- 215 (819)
Q Consensus 151 fspdg~~L~sg-s~Dg~I~IwDl~t--~~~--i~~~~~h~------~~I~sl~fspdg~~L-asgs~Dg~I~iwDl~--- 215 (819)
|+|||++++++ ..++.|.+|++.. ++. +..+.... ..+..++|+|+|++| ++...++.|.+||+.
T Consensus 194 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g 273 (347)
T 3hfq_A 194 FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG 273 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence 99999977664 5678999999874 543 22333222 348899999999977 455668999999997
Q ss_pred CCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecC
Q 003445 216 TFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEP 257 (819)
Q Consensus 216 ~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~ 257 (819)
..+.+..+..+...+..++|+|||++|+++..+ .+.+|+++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 274 HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 335566666666678999999999999888654 599997764
No 152
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.82 E-value=1.4e-18 Score=207.83 Aligned_cols=248 Identities=14% Similarity=0.180 Sum_probs=189.7
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC-----CceEEEecCCCCC--------------eEEEEEc
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-----PNAILSLSGHTSG--------------IDSVSFD 68 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~-----~~~i~~l~~h~~~--------------V~~l~fs 68 (819)
++..+..|...+.+++|+| +++.|+.+ .++.|++|++.+ ++.......+... +.++.|+
T Consensus 112 ~~~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~S 189 (706)
T 2z3z_A 112 KVTYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWS 189 (706)
T ss_dssp EEEEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEEC
T ss_pred ceEEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEEC
Confidence 4456667788899999999 55566664 679999999988 7766544444333 4899999
Q ss_pred CCCCEEEEEE---------------------------------CCCeEEEEECCCCeEEEEEc--CCCCCeEEEEEecCC
Q 003445 69 SSEVLVAAGA---------------------------------ASGTIKLWDLEEAKIVRTLT--GHRSNCISVDFHPFG 113 (819)
Q Consensus 69 pdg~~Lasgs---------------------------------~DG~I~IWDl~s~~~i~~l~--~h~~~I~sl~fsp~g 113 (819)
|||++|++++ .++.|.+||+.+++...... .|...+.+++|+|+|
T Consensus 190 pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 269 (706)
T 2z3z_A 190 PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE 269 (706)
T ss_dssp TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTS
T ss_pred CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCC
Confidence 9999999987 45789999999988765443 466779999999999
Q ss_pred CEEEEEECCC-----cEEEEECCCCeEEEEE-ec-CCC---CeEEEEEcC--CCCEEEEEECCCeEEEEECC-CCeEEEE
Q 003445 114 EFFASGSLDT-----NLKIWDIRKKGCIHTY-KG-HTR---GVNAIRFTP--DGRWVVSGGEDNTVKLWDLT-AGKLLHD 180 (819)
Q Consensus 114 ~~Lasgs~Dg-----~I~IwDi~t~~~i~~~-~~-h~~---~I~sl~fsp--dg~~L~sgs~Dg~I~IwDl~-t~~~i~~ 180 (819)
++|++++.++ .|++||+.+++....+ .. +.. .+..++|+| ||++++++..+|.++||++. ++..+..
T Consensus 270 ~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~ 349 (706)
T 2z3z_A 270 NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ 349 (706)
T ss_dssp SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEE
T ss_pred CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEe
Confidence 9999988775 8999999998333333 22 222 246789999 99999999999999999876 6677777
Q ss_pred EecCCCCeEE-EEEeCCCCEEEEEECC-C----eEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-----C
Q 003445 181 FKCHEGQIQC-IDFHPHEFLLATGSAD-R----TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-----S 249 (819)
Q Consensus 181 ~~~h~~~I~s-l~fspdg~~Lasgs~D-g----~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-----~ 249 (819)
+..+...+.. ++|+|+++.|+.++.+ + .|+.||+.+++ ...+. +...+.+++|+|||++|+.+..+ .
T Consensus 350 l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~ 427 (706)
T 2z3z_A 350 VTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRK 427 (706)
T ss_dssp CCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCE
T ss_pred cCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcE
Confidence 7777777876 7999999887766544 3 68888887766 33333 56678999999999998866432 3
Q ss_pred EEEEEecCCc
Q 003445 250 LKVFSWEPIR 259 (819)
Q Consensus 250 I~Vwd~~~~~ 259 (819)
+.+|+.++.+
T Consensus 428 i~l~d~~~~~ 437 (706)
T 2z3z_A 428 VTVTNIGKGS 437 (706)
T ss_dssp EEEEESSSCE
T ss_pred EEEEECCCCe
Confidence 8899988766
No 153
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.82 E-value=5.5e-19 Score=211.70 Aligned_cols=276 Identities=9% Similarity=0.031 Sum_probs=195.5
Q ss_pred EEEEeccCC---CEEEEEEeeCCCcEEEEEeCC---------CeEEEEECCCCceEEEec---CCCCCeEEEEEcCCCCE
Q 003445 9 LQEFVAHSS---TVNCLKIGRKSSRVLVTGGED---------HKVNLWAIGKPNAILSLS---GHTSGIDSVSFDSSEVL 73 (819)
Q Consensus 9 l~~~~~H~~---~V~~lafsp~~~~~Latgs~D---------g~V~IWdl~~~~~i~~l~---~h~~~V~~l~fspdg~~ 73 (819)
...+..|.. .|.+++|+| ++++|++++.+ +.|.+||+.+++. ..+. +|...+..++|+|||+.
T Consensus 50 ~~~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~ 127 (723)
T 1xfd_A 50 TVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQ 127 (723)
T ss_dssp EEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTC
T ss_pred EEEeccccccccccceEEECC-CCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCE
Confidence 345555654 499999999 56677777654 7889999988876 3333 34556899999999999
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEcCCCCCe------------------EEEEEecCCCEEEEEECCC------------
Q 003445 74 VAAGAASGTIKLWDLEEAKIVRTLTGHRSNC------------------ISVDFHPFGEFFASGSLDT------------ 123 (819)
Q Consensus 74 Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I------------------~sl~fsp~g~~Lasgs~Dg------------ 123 (819)
|+.++. +.|++||+.+++.......+...+ .+++|+|+|++|++++.|+
T Consensus 128 la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~ 206 (723)
T 1xfd_A 128 LIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT 206 (723)
T ss_dssp EEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS
T ss_pred EEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccC
Confidence 999875 899999999988777666544433 7899999999999987553
Q ss_pred ----------------------cEEEEECCCCeEEEEEecC------CCCeEEEEEcCCCCEEEEEECC----CeEEEEE
Q 003445 124 ----------------------NLKIWDIRKKGCIHTYKGH------TRGVNAIRFTPDGRWVVSGGED----NTVKLWD 171 (819)
Q Consensus 124 ----------------------~I~IwDi~t~~~i~~~~~h------~~~I~sl~fspdg~~L~sgs~D----g~I~IwD 171 (819)
.|++||+.+++....+..+ ...+..++|+|||++|++.... ..|++||
T Consensus 207 ~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 286 (723)
T 1xfd_A 207 GSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCD 286 (723)
T ss_dssp SSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEE
T ss_pred CcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEe
Confidence 7999999988765566544 5678999999999988776543 5799999
Q ss_pred CCCCeEEEEEec-CCCCe----EEEEEeCCCCEEEE--EECCC------eEEEEE-CCCCe--EEEEeCCCCCCeeE-EE
Q 003445 172 LTAGKLLHDFKC-HEGQI----QCIDFHPHEFLLAT--GSADR------TVKFWD-LETFE--LIGSAGPETSGVRC-LT 234 (819)
Q Consensus 172 l~t~~~i~~~~~-h~~~I----~sl~fspdg~~Las--gs~Dg------~I~iwD-l~~~~--~l~~~~~~~~~I~s-l~ 234 (819)
+.+++....+.. +.+.+ ..++|+|||+.|+. +..++ .|++|| ...+. +...+..+...+.. ++
T Consensus 287 ~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~ 366 (723)
T 1xfd_A 287 ATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILA 366 (723)
T ss_dssp TTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEE
T ss_pred CCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeE
Confidence 999987766543 33433 37899999997765 45677 577788 44444 13444433444554 69
Q ss_pred EeCCCCEEEEEEC----CCEEEEEecCCc--eeeeeec---cccceeEeEe-cCCCEEEEEEc
Q 003445 235 FNPDGRTLLCGLH----ESLKVFSWEPIR--CHDAVDV---GWSRLSDLNV-HEGKLLGCSYN 287 (819)
Q Consensus 235 fspdg~~Lasgs~----d~I~Vwd~~~~~--~~~~~~~---~~s~i~~l~~-~dg~lLa~~~~ 287 (819)
|+|||+.|+..+. +.+++|+++... ....+.. +...+..+.+ ++|+.++....
T Consensus 367 ~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 367 YDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp EETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred EcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 9999999976544 348999987532 2222221 1222334433 78887776543
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=6.9e-20 Score=219.94 Aligned_cols=273 Identities=13% Similarity=0.133 Sum_probs=196.5
Q ss_pred EEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCC---CeEEEEEcCCCCEEEEEEC---------CCeEEEEEC
Q 003445 21 CLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTS---GIDSVSFDSSEVLVAAGAA---------SGTIKLWDL 88 (819)
Q Consensus 21 ~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~---~V~~l~fspdg~~Lasgs~---------DG~I~IWDl 88 (819)
+++|+|++ .++++ +.|+.|++||+.+++....+.+|.. .+.+++|+|||++|++++. ++.|++||+
T Consensus 20 ~~~~s~dg-~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQ-EYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSS-EEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCC-eEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 78999955 65554 4699999999999988777765543 4899999999999998876 789999999
Q ss_pred CCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE-ecCCCCe-----------------EEEE
Q 003445 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-KGHTRGV-----------------NAIR 150 (819)
Q Consensus 89 ~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~-~~h~~~I-----------------~sl~ 150 (819)
.+++.+... .....+..++|+|+|+.|+++. ++.|++||+.+++..... .++...| .+++
T Consensus 98 ~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~ 175 (719)
T 1z68_A 98 SNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALW 175 (719)
T ss_dssp TTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred CCCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEE
Confidence 998763111 1235688899999999999986 789999999888765432 2222222 4899
Q ss_pred EcCCCCEEEEEECCC----------------------------------eEEEEECCCCeEE---E-----EEecCCCCe
Q 003445 151 FTPDGRWVVSGGEDN----------------------------------TVKLWDLTAGKLL---H-----DFKCHEGQI 188 (819)
Q Consensus 151 fspdg~~L~sgs~Dg----------------------------------~I~IwDl~t~~~i---~-----~~~~h~~~I 188 (819)
|+|||++|++++.|. .|++||+.+++.. . .+..|...+
T Consensus 176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (719)
T 1z68_A 176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYF 255 (719)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEE
T ss_pred ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceE
Confidence 999999999987652 7899999987642 1 123477789
Q ss_pred EEEEEeCCCCEEEEEECC----CeEEEEE----CCCCeEEEEe----CCCCCCee-----EEEEeCCCCEEEE-EE-CC-
Q 003445 189 QCIDFHPHEFLLATGSAD----RTVKFWD----LETFELIGSA----GPETSGVR-----CLTFNPDGRTLLC-GL-HE- 248 (819)
Q Consensus 189 ~sl~fspdg~~Lasgs~D----g~I~iwD----l~~~~~l~~~----~~~~~~I~-----sl~fspdg~~Las-gs-~d- 248 (819)
..++|+||++++++.... ..|++|| +.+++....+ ..+...+. .+.|+|||+.|+. .+ .+
T Consensus 256 ~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g 335 (719)
T 1z68_A 256 SWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG 335 (719)
T ss_dssp EEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTS
T ss_pred EEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCC
Confidence 999999998877775432 2488999 8877765444 35666666 8899999996654 22 22
Q ss_pred C--EEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcC-----CeEEEEEecC
Q 003445 249 S--LKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQ-----SCVGVWVVDI 298 (819)
Q Consensus 249 ~--I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~D-----g~V~IW~ld~ 298 (819)
. |.+|+....+........|.......+ +++.++..+.+ +.+++|.++.
T Consensus 336 ~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 336 YKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp CEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred ceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 3 444455455543333444443333445 78777766665 8899999876
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.82 E-value=3e-17 Score=179.78 Aligned_cols=267 Identities=11% Similarity=0.193 Sum_probs=183.9
Q ss_pred CcEEEEEe----CCCeEEEEEC--CCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCC--Ce--EE
Q 003445 29 SRVLVTGG----EDHKVNLWAI--GKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS----GTIKLWDLEE--AK--IV 94 (819)
Q Consensus 29 ~~~Latgs----~Dg~V~IWdl--~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D----G~I~IWDl~s--~~--~i 94 (819)
..++++|+ .++.|.+|.+ .+++.......+...+..++|+|++++|++++.+ +.|.+|++.. ++ .+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 34566664 4568999976 4454433222267788899999999999998876 8999999865 44 33
Q ss_pred EEEcCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCeEEEE----E--ec--------CCCCeEEEEEcCCCCEEE
Q 003445 95 RTLTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRKKGCIHT----Y--KG--------HTRGVNAIRFTPDGRWVV 159 (819)
Q Consensus 95 ~~l~~h~~~I~sl~fsp~g~~Lasgs-~Dg~I~IwDi~t~~~i~~----~--~~--------h~~~I~sl~fspdg~~L~ 159 (819)
.....+......+++ ++++|++++ .++.|.+|++.....+.. + .+ +...+.+++|+|+|++|+
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 444445566777888 788777776 578999999975432211 1 11 123458899999999777
Q ss_pred EEEC-CCeEEEEECCCCe-------EE-----EE-EecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCeE--EEE
Q 003445 160 SGGE-DNTVKLWDLTAGK-------LL-----HD-FKCHEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLETFEL--IGS 222 (819)
Q Consensus 160 sgs~-Dg~I~IwDl~t~~-------~i-----~~-~~~h~~~I~sl~fspdg~~Lasgs-~Dg~I~iwDl~~~~~--l~~ 222 (819)
+++. ++.|.+|++.... .. .. ...+...+..++|+|+|++|++++ .++.|.+||+.+++. +..
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~ 250 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT 250 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence 6654 7899999887533 11 11 122445678999999999888877 689999999987754 222
Q ss_pred e---CCCCCCeeEEEEeCCCCEEEEEEC---CCEEEEEecC--Cc--eeeeeeccccceeEeEe-cCCCEEEEEE-cCCe
Q 003445 223 A---GPETSGVRCLTFNPDGRTLLCGLH---ESLKVFSWEP--IR--CHDAVDVGWSRLSDLNV-HEGKLLGCSY-NQSC 290 (819)
Q Consensus 223 ~---~~~~~~I~sl~fspdg~~Lasgs~---d~I~Vwd~~~--~~--~~~~~~~~~s~i~~l~~-~dg~lLa~~~-~Dg~ 290 (819)
+ ..+......++|+|||++|+++.. +.+.+|+++. ++ ....+..+ .....+.+ ++|++|+++. .++.
T Consensus 251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g-~~~~~~~~spdg~~l~~~~~~~~~ 329 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTG-IHPRNFIITPNGKYLLVACRDTNV 329 (361)
T ss_dssp EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECS-SCCCEEEECTTSCEEEEEETTTTE
T ss_pred EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCC-CCCceEEECCCCCEEEEEECCCCC
Confidence 2 233345789999999999977654 3599999973 33 23333332 23334444 7899888877 6799
Q ss_pred EEEEEecC
Q 003445 291 VGVWVVDI 298 (819)
Q Consensus 291 V~IW~ld~ 298 (819)
|.+|.++.
T Consensus 330 v~v~~~d~ 337 (361)
T 3scy_A 330 IQIFERDQ 337 (361)
T ss_dssp EEEEEECT
T ss_pred EEEEEEEC
Confidence 99987764
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.82 E-value=1.9e-17 Score=181.40 Aligned_cols=239 Identities=13% Similarity=0.189 Sum_probs=172.3
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCC----CeEEEEECCC--Cc--eEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCeEEE
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGED----HKVNLWAIGK--PN--AILSLSGHTSGIDSVSFDSSEVLVAAGA-ASGTIKL 85 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~D----g~V~IWdl~~--~~--~i~~l~~h~~~V~~l~fspdg~~Lasgs-~DG~I~I 85 (819)
|...+..++|+| ++++|++++.+ +.|.+|++.. +. .+.....+......+++ ++++|++++ .++.|.+
T Consensus 48 ~~~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence 677888899999 56677777765 8999998865 33 33344445667888888 788777766 5789999
Q ss_pred EECCCCeEEE------EEcC--------CCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCe-------E------EE
Q 003445 86 WDLEEAKIVR------TLTG--------HRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRKKG-------C------IH 137 (819)
Q Consensus 86 WDl~s~~~i~------~l~~--------h~~~I~sl~fsp~g~~Lasgs-~Dg~I~IwDi~t~~-------~------i~ 137 (819)
|++.....+. ...+ +...+.+++|+|+|+++++++ .++.|++|++.... . ..
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 9997543221 1111 123457899999999776665 47899999887543 1 11
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeE--EEEEec---CCCCeEEEEEeCCCCEEEEEECC--CeE
Q 003445 138 TYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLWDLTAGKL--LHDFKC---HEGQIQCIDFHPHEFLLATGSAD--RTV 209 (819)
Q Consensus 138 ~~~~h~~~I~sl~fspdg~~L~sgs-~Dg~I~IwDl~t~~~--i~~~~~---h~~~I~sl~fspdg~~Lasgs~D--g~I 209 (819)
....+......++|+|||+++++++ .++.|.+||+.+++. +..+.. +......++|+|+|++|+++..+ +.|
T Consensus 205 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i 284 (361)
T 3scy_A 205 FKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGV 284 (361)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE
T ss_pred eecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEE
Confidence 1223455688999999999888877 589999999987754 233322 23457899999999998777665 899
Q ss_pred EEEECC--CCe--EEEEeCCCCCCeeEEEEeCCCCEEEEEEC--CCEEEEEecC
Q 003445 210 KFWDLE--TFE--LIGSAGPETSGVRCLTFNPDGRTLLCGLH--ESLKVFSWEP 257 (819)
Q Consensus 210 ~iwDl~--~~~--~l~~~~~~~~~I~sl~fspdg~~Lasgs~--d~I~Vwd~~~ 257 (819)
.+|++. +++ .+..+.. ...+.+++|+|||++|+++.. +.+.+|.++.
T Consensus 285 ~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 285 AIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp EEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred EEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 999995 444 4444544 567889999999999998874 3599988874
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.81 E-value=3.2e-19 Score=202.59 Aligned_cols=210 Identities=13% Similarity=0.068 Sum_probs=166.0
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-----------eEE-----EEEcCCCC
Q 003445 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA-----------KIV-----RTLTGHRS 102 (819)
Q Consensus 39 g~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~-----------~~i-----~~l~~h~~ 102 (819)
+.+++|+.... .....++.+++++++.++++++.+| +++|+.... ... ..+ .+..
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 93 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKF 93 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSS
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCC
Confidence 46888764211 2345689999999999999999888 888875311 111 112 3567
Q ss_pred CeEEEEEecCCCEEE----EEECCCcEEEEECCCC--------e---EEEEEecCCCCeEEEEEcCC-CCEEEEEECCCe
Q 003445 103 NCISVDFHPFGEFFA----SGSLDTNLKIWDIRKK--------G---CIHTYKGHTRGVNAIRFTPD-GRWVVSGGEDNT 166 (819)
Q Consensus 103 ~I~sl~fsp~g~~La----sgs~Dg~I~IwDi~t~--------~---~i~~~~~h~~~I~sl~fspd-g~~L~sgs~Dg~ 166 (819)
.|.+++|+|++++|+ +|+.|+.|++||++++ + .+..+.+|...|.+++|+|+ +.+|++++.||.
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~ 173 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS 173 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence 899999999999999 7888999999998654 2 24556679999999999997 889999999999
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC-------CCCeeEEEEeCCC
Q 003445 167 VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE-------TSGVRCLTFNPDG 239 (819)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~-------~~~I~sl~fspdg 239 (819)
|++||++++..+.....|...|.+++|+|+|.+|++|+.||.|++||++ ++....+..+ ...+.++.|++++
T Consensus 174 v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~ 252 (434)
T 2oit_A 174 IAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY 252 (434)
T ss_dssp EEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred EEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc
Confidence 9999999998777777788999999999999999999999999999998 5555555433 2378999999998
Q ss_pred CEEEEEECC--------CEEEEEecCC
Q 003445 240 RTLLCGLHE--------SLKVFSWEPI 258 (819)
Q Consensus 240 ~~Lasgs~d--------~I~Vwd~~~~ 258 (819)
.++++...+ .+++|++...
T Consensus 253 ~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 253 VFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred eEEEEEccCCCccCCCCceEEEEeccC
Confidence 888654322 2889998754
No 158
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=3.4e-18 Score=188.30 Aligned_cols=292 Identities=12% Similarity=-0.009 Sum_probs=202.2
Q ss_pred cceEEEEeccCCCEEE-----EEEeeCCCcEEEEEeC-CC--eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE
Q 003445 6 AYKLQEFVAHSSTVNC-----LKIGRKSSRVLVTGGE-DH--KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG 77 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~-----lafsp~~~~~Latgs~-Dg--~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasg 77 (819)
...+..+..|...... .+|+|++ +.|+.++. +| .|.+||+.+++......++...+..+.|+||++.|+.+
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~ 98 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRDG-SKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYV 98 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTS-CEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEE
T ss_pred CcceEEecCCcccccchhhcCccCCCCC-CEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEE
Confidence 3456667777776766 8899955 45555554 67 48888998888877777777666678899999999999
Q ss_pred ECCCeEEEEECCCCeEEEEEcCCCCCeEEEE--EecCCCEEEEEE----------------------CCCcEEEEECCCC
Q 003445 78 AASGTIKLWDLEEAKIVRTLTGHRSNCISVD--FHPFGEFFASGS----------------------LDTNLKIWDIRKK 133 (819)
Q Consensus 78 s~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~--fsp~g~~Lasgs----------------------~Dg~I~IwDi~t~ 133 (819)
+.++.|++||+.+++....+..+...+.... +++++.+++... .++.|++||+.++
T Consensus 99 ~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 178 (388)
T 3pe7_A 99 KDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG 178 (388)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred eCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence 9999999999999988777776666554444 489999887432 3478999999988
Q ss_pred eEEEEEecCCCCeEEEEEcC-CCCEEEEEECC------CeEEEEECCCCeEEEEEecCC--CCeEEEEEeCCCCEEEEEE
Q 003445 134 GCIHTYKGHTRGVNAIRFTP-DGRWVVSGGED------NTVKLWDLTAGKLLHDFKCHE--GQIQCIDFHPHEFLLATGS 204 (819)
Q Consensus 134 ~~i~~~~~h~~~I~sl~fsp-dg~~L~sgs~D------g~I~IwDl~t~~~i~~~~~h~--~~I~sl~fspdg~~Lasgs 204 (819)
+.... ..+...+..++|+| ||++|+.+..+ ..|.++|...++.. .+..+. ..+..+.|+|||+.|+..+
T Consensus 179 ~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~ 256 (388)
T 3pe7_A 179 ESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVS 256 (388)
T ss_dssp CEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred ceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEe
Confidence 75544 44667789999999 99999887764 37888898766543 333333 2577889999999776544
Q ss_pred C-CC----eEEEEECCCCeEE--EEeCCCCC---CeeEEEEeCCCCEEEEEE----------CCCEEEEEecCCceeeee
Q 003445 205 A-DR----TVKFWDLETFELI--GSAGPETS---GVRCLTFNPDGRTLLCGL----------HESLKVFSWEPIRCHDAV 264 (819)
Q Consensus 205 ~-Dg----~I~iwDl~~~~~l--~~~~~~~~---~I~sl~fspdg~~Lasgs----------~d~I~Vwd~~~~~~~~~~ 264 (819)
. ++ .|++||+.+++.. ..+..+.. ....+.|+|||+.|+... ...|.+|++++++.....
T Consensus 257 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 336 (388)
T 3pe7_A 257 YLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVA 336 (388)
T ss_dssp EETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEE
T ss_pred cCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEec
Confidence 3 22 3999999988743 33332100 012237999999888542 225888888887665443
Q ss_pred eccc--c--------ceeE-eEecCCCEEEEEE-cCCeEEEEEecCCc
Q 003445 265 DVGW--S--------RLSD-LNVHEGKLLGCSY-NQSCVGVWVVDISR 300 (819)
Q Consensus 265 ~~~~--s--------~i~~-l~~~dg~lLa~~~-~Dg~V~IW~ld~~~ 300 (819)
.... . .... ...+||+.|+.++ .++...||.++...
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 337 RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred cccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 3222 1 1223 3347888777555 57888899887654
No 159
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=5.1e-18 Score=205.26 Aligned_cols=277 Identities=12% Similarity=0.127 Sum_probs=198.9
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCC-----eEEEEEcCCCCEEEEEECC---------Ce
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSG-----IDSVSFDSSEVLVAAGAAS---------GT 82 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~-----V~~l~fspdg~~Lasgs~D---------G~ 82 (819)
....+++|+| ++.+++++ ||.|++||+.+++....+.+|... ...+.|+|||++|+.++.+ +.
T Consensus 17 ~~~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 17 LKLYSLRWIS-DHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCEEECS-SSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccccccEECC-CCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 3466899999 56778776 899999999999988888877643 2448899999999998875 66
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE-EecCCCCe---------------
Q 003445 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT-YKGHTRGV--------------- 146 (819)
Q Consensus 83 I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~-~~~h~~~I--------------- 146 (819)
+.+||+.+++.. .+..|...+...+|+|||+.||.+. ++.|++||+.++...+. ..++...+
T Consensus 94 ~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 94 YDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171 (740)
T ss_dssp EEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred EEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence 789999999864 4666788899999999999999985 68999999988775542 22222222
Q ss_pred --EEEEEcCCCCEEEEEECCC------------------------------------eEEEEECCC---Ce--EEEEEe-
Q 003445 147 --NAIRFTPDGRWVVSGGEDN------------------------------------TVKLWDLTA---GK--LLHDFK- 182 (819)
Q Consensus 147 --~sl~fspdg~~L~sgs~Dg------------------------------------~I~IwDl~t---~~--~i~~~~- 182 (819)
..+.|+|||++|+.++.|. .|++||+.+ ++ ....+.
T Consensus 172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~ 251 (740)
T 4a5s_A 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA 251 (740)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence 3589999999999875321 588899998 73 223333
Q ss_pred -----cCCCCeEEEEEeCCCCEEEEEEC----CCeEEEEECCCCe----EEEE--e--CCCCCCee-----EEEEeCCCC
Q 003445 183 -----CHEGQIQCIDFHPHEFLLATGSA----DRTVKFWDLETFE----LIGS--A--GPETSGVR-----CLTFNPDGR 240 (819)
Q Consensus 183 -----~h~~~I~sl~fspdg~~Lasgs~----Dg~I~iwDl~~~~----~l~~--~--~~~~~~I~-----sl~fspdg~ 240 (819)
+|...+..++|+|||++++.... +..|++||+.+++ +... + ..+...+. ...|+|||+
T Consensus 252 ~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~ 331 (740)
T 4a5s_A 252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGN 331 (740)
T ss_dssp CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCC
Confidence 26677999999999997766543 3379999998876 2211 1 33444444 788999999
Q ss_pred EEE-EEECC----CEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcC-----CeEEEEEecCC
Q 003445 241 TLL-CGLHE----SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQ-----SCVGVWVVDIS 299 (819)
Q Consensus 241 ~La-sgs~d----~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~D-----g~V~IW~ld~~ 299 (819)
.|+ ..++. .|.+|+.+..+...+....|.....+. .+++.|+..+.. +...||.++..
T Consensus 332 ~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~ 399 (740)
T 4a5s_A 332 SFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLI 399 (740)
T ss_dssp EEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETT
T ss_pred EEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECC
Confidence 877 66543 277777777777777666666544433 446655544433 45666666554
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=9.9e-17 Score=176.85 Aligned_cols=270 Identities=10% Similarity=0.072 Sum_probs=184.5
Q ss_pred EEEEEeCC--CeEEEEEC--CCCceEE--Eec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEEEEEcCC-C
Q 003445 31 VLVTGGED--HKVNLWAI--GKPNAIL--SLS-GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE-EAKIVRTLTGH-R 101 (819)
Q Consensus 31 ~Latgs~D--g~V~IWdl--~~~~~i~--~l~-~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~-s~~~i~~l~~h-~ 101 (819)
.+++|+.. +.|.+|++ .+++... ... .....+..++|+|++++|++++.+ .|.+|++. +++........ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 35566553 56887765 4454322 221 234468899999999999998887 99999997 78765433211 1
Q ss_pred CCeEEEEEecCCCE--EEEEE-------------CCCcEEEEECC-CCeEEEEEe----cCCCCeEEEEEcCCCCEEEEE
Q 003445 102 SNCISVDFHPFGEF--FASGS-------------LDTNLKIWDIR-KKGCIHTYK----GHTRGVNAIRFTPDGRWVVSG 161 (819)
Q Consensus 102 ~~I~sl~fsp~g~~--Lasgs-------------~Dg~I~IwDi~-t~~~i~~~~----~h~~~I~sl~fspdg~~L~sg 161 (819)
+...+++|+|+|++ ++++. .+|.+.+|++. .++....+. .+...+.+++|+|||++|+++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 23556899999994 44543 68999999997 465544433 245679999999999988877
Q ss_pred EC-CCeEEEEECC-CCeEE--EEEe--cCCCCeEEEEEeCCCCEEEEEEC-CCeEEEEECC--CCeEE---EEe---CCC
Q 003445 162 GE-DNTVKLWDLT-AGKLL--HDFK--CHEGQIQCIDFHPHEFLLATGSA-DRTVKFWDLE--TFELI---GSA---GPE 226 (819)
Q Consensus 162 s~-Dg~I~IwDl~-t~~~i--~~~~--~h~~~I~sl~fspdg~~Lasgs~-Dg~I~iwDl~--~~~~l---~~~---~~~ 226 (819)
.. ++.|++||+. +++.. ..+. .+...+..++|+|+|++|++++. ++.|.+|++. +++.. ..+ ...
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 242 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence 64 6799999998 77653 3333 23567899999999999988775 6899999865 56542 122 111
Q ss_pred ----CC------CeeEEE-EeCCCCEEEEEE--CC-----CEEEEEec-CCceeee---eeccccceeEeE-ec---CCC
Q 003445 227 ----TS------GVRCLT-FNPDGRTLLCGL--HE-----SLKVFSWE-PIRCHDA---VDVGWSRLSDLN-VH---EGK 280 (819)
Q Consensus 227 ----~~------~I~sl~-fspdg~~Lasgs--~d-----~I~Vwd~~-~~~~~~~---~~~~~s~i~~l~-~~---dg~ 280 (819)
.. .+..++ |+|||++|+++. .+ .|.+|+++ +++.... +.........+. .+ +|+
T Consensus 243 ~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~ 322 (365)
T 1jof_A 243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE 322 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC
Confidence 11 478999 999999988664 23 69999997 4444331 221111122222 35 799
Q ss_pred EEEEEEcC-CeEEEEEecCCce
Q 003445 281 LLGCSYNQ-SCVGVWVVDISRI 301 (819)
Q Consensus 281 lLa~~~~D-g~V~IW~ld~~~~ 301 (819)
+|+++..+ +.|.+|+++...+
T Consensus 323 ~l~v~~~~~~~v~v~~~~~~~l 344 (365)
T 1jof_A 323 WMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp EEEEECSSSCEEEEEEEETTEE
T ss_pred EEEEEEcCCCeEEEEEEchhhC
Confidence 99888764 8999999998744
No 161
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.77 E-value=4.7e-17 Score=193.21 Aligned_cols=291 Identities=13% Similarity=0.025 Sum_probs=205.0
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEE--eCCCeEEEEECCCCceEEEecCCCCCeE---------EEEEc--CCCCE-EE
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTG--GEDHKVNLWAIGKPNAILSLSGHTSGID---------SVSFD--SSEVL-VA 75 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latg--s~Dg~V~IWdl~~~~~i~~l~~h~~~V~---------~l~fs--pdg~~-La 75 (819)
..+.+|...|..++|++ +..+++.. +.++...||....+.....+..|...+. ...|+ ||++. |+
T Consensus 17 ~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 17 ALVASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHHTCSCCEEEEEET-TEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHHhhcCCccceeEEcC-CeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 34667999999999997 55555555 5578999999755666777777776666 66665 99988 77
Q ss_pred EEEC-CCeEEEEECC--C-CeEEEEEcC-----CCCCeEEEEEecCCCEEEEEECC----------CcEEEEECCC----
Q 003445 76 AGAA-SGTIKLWDLE--E-AKIVRTLTG-----HRSNCISVDFHPFGEFFASGSLD----------TNLKIWDIRK---- 132 (819)
Q Consensus 76 sgs~-DG~I~IWDl~--s-~~~i~~l~~-----h~~~I~sl~fsp~g~~Lasgs~D----------g~I~IwDi~t---- 132 (819)
.++. +..|.+|++. . ++ ...+.. |...+..++|+|+|+.|++++.+ ..|++||+.+
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 174 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA 174 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred EEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence 6554 5667777765 2 43 445555 56778899999999999998876 5899999987
Q ss_pred --CeEEEEEe-cCCCCeEEEEEcCCCCEEEEEECC--------CeEEEEECC-CC---eEEEEEecCCCCeEEEEEeCCC
Q 003445 133 --KGCIHTYK-GHTRGVNAIRFTPDGRWVVSGGED--------NTVKLWDLT-AG---KLLHDFKCHEGQIQCIDFHPHE 197 (819)
Q Consensus 133 --~~~i~~~~-~h~~~I~sl~fspdg~~L~sgs~D--------g~I~IwDl~-t~---~~i~~~~~h~~~I~sl~fspdg 197 (819)
+.. ..+. .+...+..++|+|||++|+.++.+ ..|++||+. ++ +.......+...+..+.|+|||
T Consensus 175 ~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg 253 (662)
T 3azo_A 175 DRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG 253 (662)
T ss_dssp CGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS
T ss_pred cCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC
Confidence 554 3444 556678889999999999987755 379999999 57 4444444557889999999999
Q ss_pred CEEEEEECCC--eEEEEECCCCeEEEEeCCCCCC--------eeEEEEeCCCCEEEEEECCCEEEEEec--CCceeeeee
Q 003445 198 FLLATGSADR--TVKFWDLETFELIGSAGPETSG--------VRCLTFNPDGRTLLCGLHESLKVFSWE--PIRCHDAVD 265 (819)
Q Consensus 198 ~~Lasgs~Dg--~I~iwDl~~~~~l~~~~~~~~~--------I~sl~fspdg~~Lasgs~d~I~Vwd~~--~~~~~~~~~ 265 (819)
++++++..++ .|++||+.+++.......+... +..++|++++++++++..+.++||.++ ..+ ...+.
T Consensus 254 ~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~ 332 (662)
T 3azo_A 254 SLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDAA 332 (662)
T ss_dssp CEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEECC
T ss_pred eEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEec
Confidence 9888888888 6777787777765444333222 567899999999998876557888554 344 44444
Q ss_pred ccccceeEe-EecCCCEEE-EEEcCCeEEEEE--ecCCceeee
Q 003445 266 VGWSRLSDL-NVHEGKLLG-CSYNQSCVGVWV--VDISRIEPY 304 (819)
Q Consensus 266 ~~~s~i~~l-~~~dg~lLa-~~~~Dg~V~IW~--ld~~~~~p~ 304 (819)
.+...+..+ ....+.+++ +++.+....||. ++.++...+
T Consensus 333 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 333 GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 444445555 443444444 445555555554 446665544
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=8.9e-17 Score=177.24 Aligned_cols=242 Identities=11% Similarity=0.117 Sum_probs=175.7
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC-CCceEEEecC-CCCCeEEEEEcCCCCE--EEEEE------------
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG-KPNAILSLSG-HTSGIDSVSFDSSEVL--VAAGA------------ 78 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~-~~~~i~~l~~-h~~~V~~l~fspdg~~--Lasgs------------ 78 (819)
+...+..++|+| ++++|++++.+ .|.+|++. +++....... ..+.+.+++|+|++++ ++++.
T Consensus 38 ~~~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 38 QDEPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TTCCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 344688999999 56677888877 89999997 6765443321 1123667999999994 44543
Q ss_pred -CCCeEEEEECC-CCeEEEEEc----CCCCCeEEEEEecCCCEEEEEEC-CCcEEEEECC-CCeEE--EEEe--cCCCCe
Q 003445 79 -ASGTIKLWDLE-EAKIVRTLT----GHRSNCISVDFHPFGEFFASGSL-DTNLKIWDIR-KKGCI--HTYK--GHTRGV 146 (819)
Q Consensus 79 -~DG~I~IWDl~-s~~~i~~l~----~h~~~I~sl~fsp~g~~Lasgs~-Dg~I~IwDi~-t~~~i--~~~~--~h~~~I 146 (819)
.+|.+.+|++. .++....+. .+...+.+++|+|+|++++++.. ++.|++||+. +++.. ..+. .|...+
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p 195 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence 68999999997 466544433 24567899999999998887764 6799999998 66643 3343 245678
Q ss_pred EEEEEcCCCCEEEEEEC-CCeEEEEECC--CCeEE---EEEec-------CCC------CeEEEE-EeCCCCEEEEEECC
Q 003445 147 NAIRFTPDGRWVVSGGE-DNTVKLWDLT--AGKLL---HDFKC-------HEG------QIQCID-FHPHEFLLATGSAD 206 (819)
Q Consensus 147 ~sl~fspdg~~L~sgs~-Dg~I~IwDl~--t~~~i---~~~~~-------h~~------~I~sl~-fspdg~~Lasgs~D 206 (819)
..++|+|||++|++++. ++.|.+|++. +++.. ..+.. |.. .+..++ |+|||++|+++..+
T Consensus 196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 99999999999988775 6899999765 56543 22221 121 488999 99999988877643
Q ss_pred C------eEEEEECC-CCeEEE---EeCCCCCCeeEEEEeC---CCCEEEEEEC--CCEEEEEecCC
Q 003445 207 R------TVKFWDLE-TFELIG---SAGPETSGVRCLTFNP---DGRTLLCGLH--ESLKVFSWEPI 258 (819)
Q Consensus 207 g------~I~iwDl~-~~~~l~---~~~~~~~~I~sl~fsp---dg~~Lasgs~--d~I~Vwd~~~~ 258 (819)
. .|.+|++. +++... ....+...+..++|+| ||++|+++.. +.+.+|+++..
T Consensus 276 ~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 2 89999996 566543 2333445567899999 8999998865 36999999876
No 163
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.75 E-value=2.6e-17 Score=181.11 Aligned_cols=287 Identities=13% Similarity=-0.002 Sum_probs=189.8
Q ss_pred eEEEEeccCCC-----EEEEEEeeCCCcEEEEEeCC--CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC
Q 003445 8 KLQEFVAHSST-----VNCLKIGRKSSRVLVTGGED--HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS 80 (819)
Q Consensus 8 kl~~~~~H~~~-----V~~lafsp~~~~~Latgs~D--g~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D 80 (819)
.+..+..+... +.+++|+|++..++++...+ ..|.+||+.+++......++......+.|+||+++|+.++.+
T Consensus 22 ~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~ 101 (396)
T 3c5m_A 22 KVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNE 101 (396)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETT
T ss_pred ceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcC
Confidence 34555555443 77889999555444444433 468888988777654444333334448899999999999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEE-------------------EEEecCCCEEEEE-----ECCCcEEEEECCCCeEE
Q 003445 81 GTIKLWDLEEAKIVRTLTGHRSNCIS-------------------VDFHPFGEFFASG-----SLDTNLKIWDIRKKGCI 136 (819)
Q Consensus 81 G~I~IWDl~s~~~i~~l~~h~~~I~s-------------------l~fsp~g~~Lasg-----s~Dg~I~IwDi~t~~~i 136 (819)
+.|++||+.+++.......+...... +.|+|+++.++.+ ..+..|++||+.+++..
T Consensus 102 ~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (396)
T 3c5m_A 102 LNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELE 181 (396)
T ss_dssp TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEE
T ss_pred CcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEE
Confidence 99999999998876666544442222 3456777665544 35678999999988765
Q ss_pred EEEecCCCCeEEEEEcC-CCCEEEEEECC------CeEEEEECCCCeEEEEEecC-CCCeEEEEEeCCCCEEEEEECC--
Q 003445 137 HTYKGHTRGVNAIRFTP-DGRWVVSGGED------NTVKLWDLTAGKLLHDFKCH-EGQIQCIDFHPHEFLLATGSAD-- 206 (819)
Q Consensus 137 ~~~~~h~~~I~sl~fsp-dg~~L~sgs~D------g~I~IwDl~t~~~i~~~~~h-~~~I~sl~fspdg~~Lasgs~D-- 206 (819)
... .+...+..+.|+| ++..|+..+.+ ..|.+||+..++........ ...+..+.|+|+|++|+.++.+
T Consensus 182 ~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 260 (396)
T 3c5m_A 182 VIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKG 260 (396)
T ss_dssp EEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETT
T ss_pred eec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCC
Confidence 554 4667789999999 88877776653 36899998766543322211 2257889999999987777544
Q ss_pred ---CeEEEEECCCCeEEEEeCCCCCCeeEEEEeC-CCCEEEEEEC-----------------CCEEEEEecCCceeeeee
Q 003445 207 ---RTVKFWDLETFELIGSAGPETSGVRCLTFNP-DGRTLLCGLH-----------------ESLKVFSWEPIRCHDAVD 265 (819)
Q Consensus 207 ---g~I~iwDl~~~~~l~~~~~~~~~I~sl~fsp-dg~~Lasgs~-----------------d~I~Vwd~~~~~~~~~~~ 265 (819)
+.|++||+.+++........ ... +.|+| ||++++++.. ..|.+|+..+++......
T Consensus 261 ~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 337 (396)
T 3c5m_A 261 QTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCK 337 (396)
T ss_dssp TCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEE
T ss_pred CccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccC
Confidence 45999999988754432221 133 89999 9998887541 347788877665443332
Q ss_pred cccc-----------ceeEeEecCCCEEEEEEc-CCeEEEEEecC
Q 003445 266 VGWS-----------RLSDLNVHEGKLLGCSYN-QSCVGVWVVDI 298 (819)
Q Consensus 266 ~~~s-----------~i~~l~~~dg~lLa~~~~-Dg~V~IW~ld~ 298 (819)
.... .......++|+.|+.++. ++...||.++.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~ 382 (396)
T 3c5m_A 338 HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADV 382 (396)
T ss_dssp CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred CCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEE
Confidence 2211 111223478887776654 56667776653
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.74 E-value=2.1e-15 Score=159.47 Aligned_cols=238 Identities=11% Similarity=0.205 Sum_probs=182.6
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec------CCCCCeEEEEE-cCCCCEEEEEEC-CCeEEEE
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS------GHTSGIDSVSF-DSSEVLVAAGAA-SGTIKLW 86 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~------~h~~~V~~l~f-spdg~~Lasgs~-DG~I~IW 86 (819)
|-..+.++++++ +++++++...++.|.+||.. ++.+..+. +|...+.++++ .+++.++++... ++.|.+|
T Consensus 28 ~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 28 QFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp CBSCEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred ccCCCceEEECC-CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 346799999998 56788888889999999976 66666554 24457899999 567776666543 8999999
Q ss_pred ECCCCeEEEEEcC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEEC
Q 003445 87 DLEEAKIVRTLTG-HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK--GHTRGVNAIRFTPDGRWVVSGGE 163 (819)
Q Consensus 87 Dl~s~~~i~~l~~-h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~--~h~~~I~sl~fspdg~~L~sgs~ 163 (819)
| .+++.+..+.. +...+.++++.++|+++++...++.|++||.. ++.+..+. .+...+..++++++|+++++...
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 9 66777776643 44578999999999988887778999999964 55566654 34456899999999997777778
Q ss_pred CCeEEEEECCCCeEEEEEecC--CCCeEEEEEeCCCCEEEEEECCC-eEEEEECCCCeEEEEeCCC--CCCeeEEEEeCC
Q 003445 164 DNTVKLWDLTAGKLLHDFKCH--EGQIQCIDFHPHEFLLATGSADR-TVKFWDLETFELIGSAGPE--TSGVRCLTFNPD 238 (819)
Q Consensus 164 Dg~I~IwDl~t~~~i~~~~~h--~~~I~sl~fspdg~~Lasgs~Dg-~I~iwDl~~~~~l~~~~~~--~~~I~sl~fspd 238 (819)
++.|++||.. ++.+..+..+ ...+..++++++|.++++...++ .|.+||. +++.+..+..+ ...+.+++|+|+
T Consensus 184 ~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~ 261 (286)
T 1q7f_A 184 AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD 261 (286)
T ss_dssp GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred CCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCC
Confidence 9999999974 5666666543 35789999999999888888776 9999996 46666655433 234789999999
Q ss_pred CCEEEEEECCCEEEEEecCC
Q 003445 239 GRTLLCGLHESLKVFSWEPI 258 (819)
Q Consensus 239 g~~Lasgs~d~I~Vwd~~~~ 258 (819)
|+++++..++.|++|++...
T Consensus 262 g~l~vs~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 262 GSVVLASKDYRLYIYRYVQL 281 (286)
T ss_dssp TEEEEEETTTEEEEEECSCC
T ss_pred CcEEEECCCCeEEEEEcccc
Confidence 98777755556999988653
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.74 E-value=3.9e-16 Score=171.76 Aligned_cols=265 Identities=12% Similarity=0.022 Sum_probs=191.1
Q ss_pred EEECCCCceEEEecCCCCCeEE-----EEEcCCCCEEEEEEC-CC--eEEEEECCCCeEEEEEcCCCCCeEEEEEecCCC
Q 003445 43 LWAIGKPNAILSLSGHTSGIDS-----VSFDSSEVLVAAGAA-SG--TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE 114 (819)
Q Consensus 43 IWdl~~~~~i~~l~~h~~~V~~-----l~fspdg~~Lasgs~-DG--~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~ 114 (819)
.++..++..+..+..|...... .+|+|||++|+.++. +| .|.+||+.+++......++...+..+.|+|+|+
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~ 93 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD 93 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC
Confidence 4566778888888888766666 889999999998887 66 488999999988877777766666778999999
Q ss_pred EEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEE--EcCCCCEEEEEE----------------------CCCeEEEE
Q 003445 115 FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIR--FTPDGRWVVSGG----------------------EDNTVKLW 170 (819)
Q Consensus 115 ~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~--fspdg~~L~sgs----------------------~Dg~I~Iw 170 (819)
.|+.++.++.|++||+.+++....+..+...+.... +++++++++... .++.|.+|
T Consensus 94 ~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (388)
T 3pe7_A 94 ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV 173 (388)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence 999999999999999999988777776666554444 489999887432 34689999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEeC-CCCEEEEEECC------CeEEEEECCCCeEEEEeCCCC-CCeeEEEEeCCCCEE
Q 003445 171 DLTAGKLLHDFKCHEGQIQCIDFHP-HEFLLATGSAD------RTVKFWDLETFELIGSAGPET-SGVRCLTFNPDGRTL 242 (819)
Q Consensus 171 Dl~t~~~i~~~~~h~~~I~sl~fsp-dg~~Lasgs~D------g~I~iwDl~~~~~l~~~~~~~-~~I~sl~fspdg~~L 242 (819)
|+.+++..... .+...+..+.|+| +|+.|+....+ ..|++||...++......... ..+....|+|||+.|
T Consensus 174 d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l 252 (388)
T 3pe7_A 174 DLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSAL 252 (388)
T ss_dssp ETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCE
T ss_pred ECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEE
Confidence 99998755443 4567789999999 99999887763 378888987665433333222 357788999999977
Q ss_pred EEEEC--C--C--EEEEEecCCceeeeeeccc------cceeEeEecCCCEEEEE---------EcCCeEEEEEecCCce
Q 003445 243 LCGLH--E--S--LKVFSWEPIRCHDAVDVGW------SRLSDLNVHEGKLLGCS---------YNQSCVGVWVVDISRI 301 (819)
Q Consensus 243 asgs~--d--~--I~Vwd~~~~~~~~~~~~~~------s~i~~l~~~dg~lLa~~---------~~Dg~V~IW~ld~~~~ 301 (819)
+..+. + . |.+||+++++......... ..-.....++|+.|+.. ..+..|++|++++++.
T Consensus 253 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 253 VYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp EEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred EEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 65432 2 2 7888887776544332221 00011234777777654 3466899999999887
Q ss_pred eeeeecc
Q 003445 302 EPYTIGS 308 (819)
Q Consensus 302 ~p~~~~~ 308 (819)
..+..+.
T Consensus 333 ~~l~~~~ 339 (388)
T 3pe7_A 333 HRVARHD 339 (388)
T ss_dssp EEEEECC
T ss_pred EEecccc
Confidence 7655443
No 166
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.74 E-value=1.8e-15 Score=163.99 Aligned_cols=271 Identities=11% Similarity=0.098 Sum_probs=185.5
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEe--------CCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGG--------EDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG 77 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs--------~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasg 77 (819)
...+..+.. -..+..+++ ++..++++.. .++.|.+||+.+++... + ..+..+.|+|||++|+.+
T Consensus 5 ~~~~~~l~~-~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~ 76 (347)
T 2gop_A 5 EWNEKTFAK-FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFM 76 (347)
T ss_dssp -----CCCC-SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEE
T ss_pred cCCccccee-eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEE
Confidence 344444433 345788888 4665555432 25789999998776543 3 568899999999998887
Q ss_pred ECC---C--eEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECC---------------------------CcE
Q 003445 78 AAS---G--TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD---------------------------TNL 125 (819)
Q Consensus 78 s~D---G--~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~D---------------------------g~I 125 (819)
+.+ + .|.+||+.+++.......+ . +..+.|+|+|+.|+.++.+ ..|
T Consensus 77 ~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (347)
T 2gop_A 77 RANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTF 154 (347)
T ss_dssp EEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEE
T ss_pred EeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceE
Confidence 654 3 4888899888876655533 3 9999999999998887632 579
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC---------eEEEEECCCCeEEEEEecCCCCeEEEEEeCC
Q 003445 126 KIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN---------TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPH 196 (819)
Q Consensus 126 ~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg---------~I~IwDl~t~~~i~~~~~h~~~I~sl~fspd 196 (819)
++||+.+++.+..+.. . .+..+.|+||| +++++..++ .|.++| +++.. .+..+ ..+..+ +|+
T Consensus 155 ~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~-~~~~~~--spd 225 (347)
T 2gop_A 155 WIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEE-KMFEK-VSFYAV--DSD 225 (347)
T ss_dssp EEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEE-EEEEE-ESEEEE--EEC
T ss_pred EEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceE-EeccC-cceeeE--CCC
Confidence 9999998887455554 3 78899999999 777776542 455566 55543 33334 455544 999
Q ss_pred CCEEEEEECC--------CeEEEEECCCCeEEEEeCCCCCCeeE-EEEeCCCCEEEEEECC-CEEEEEecCCceeeeeec
Q 003445 197 EFLLATGSAD--------RTVKFWDLETFELIGSAGPETSGVRC-LTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDV 266 (819)
Q Consensus 197 g~~Lasgs~D--------g~I~iwDl~~~~~l~~~~~~~~~I~s-l~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~ 266 (819)
|++|+.++.+ ..|++|| +++.......+...+.. +.|+ || +++++..+ .+++| ++.++.......
T Consensus 226 g~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~ 300 (347)
T 2gop_A 226 GERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKG 300 (347)
T ss_dssp SSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECS
T ss_pred CCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecC
Confidence 9988887754 3688888 66655555555677886 9999 88 77776655 58899 875554433332
Q ss_pred cccceeEeEecCCCEEEEEEcCCeE-EEEEecCCceee
Q 003445 267 GWSRLSDLNVHEGKLLGCSYNQSCV-GVWVVDISRIEP 303 (819)
Q Consensus 267 ~~s~i~~l~~~dg~lLa~~~~Dg~V-~IW~ld~~~~~p 303 (819)
...+..+.+.. .+++++..++.. .||.++ ++...
T Consensus 301 -~~~v~~~~~s~-~~~~~~~~~~~~~~l~~~~-g~~~~ 335 (347)
T 2gop_A 301 -RHWIMGFDVDE-IVVYLKETATRLRELFTWD-GEEKQ 335 (347)
T ss_dssp -SSEEEEEEESS-SEEEEEECSSSCCEEEEES-SSEEE
T ss_pred -CCeEEeeeeeC-cEEEEEcCCCChHHheEeC-CcEEE
Confidence 34456666655 788887777765 888887 55443
No 167
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.73 E-value=4.5e-16 Score=167.78 Aligned_cols=211 Identities=11% Similarity=0.077 Sum_probs=164.1
Q ss_pred EEEEeccC-CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCC------CCeEEEEEcCCCCEEEEEECC-
Q 003445 9 LQEFVAHS-STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHT------SGIDSVSFDSSEVLVAAGAAS- 80 (819)
Q Consensus 9 l~~~~~H~-~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~------~~V~~l~fspdg~~Lasgs~D- 80 (819)
+..+..+. ..+..++|+|++..+++++..++.|.+||+.+++.+..+..+. ..+.+++|+|++++|++++.+
T Consensus 34 ~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 113 (349)
T 1jmx_B 34 YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPT 113 (349)
T ss_dssp EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEE
T ss_pred EEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccc
Confidence 34454433 2578999999665566677788999999999998887776332 347899999999999998865
Q ss_pred -----------CeEEEEECCCCe---EEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCC---
Q 003445 81 -----------GTIKLWDLEEAK---IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT--- 143 (819)
Q Consensus 81 -----------G~I~IWDl~s~~---~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~--- 143 (819)
+.|.+||+.+++ .+..+. +...+.+++|+|+|+ +++++ +.|++||+.+++.+..+..+.
T Consensus 114 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~ 189 (349)
T 1jmx_B 114 QRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNR 189 (349)
T ss_dssp EECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCC
T ss_pred cccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCC
Confidence 999999998843 334444 334688999999999 55554 449999999988777665331
Q ss_pred -----------------------------------------------------------------CCeEEEEEcC-CCCE
Q 003445 144 -----------------------------------------------------------------RGVNAIRFTP-DGRW 157 (819)
Q Consensus 144 -----------------------------------------------------------------~~I~sl~fsp-dg~~ 157 (819)
..+..++|+| +|++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~ 269 (349)
T 1jmx_B 190 KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ 269 (349)
T ss_dssp TTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTE
T ss_pred ccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCE
Confidence 1345677889 9999
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC
Q 003445 158 VVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE 226 (819)
Q Consensus 158 L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~ 226 (819)
++++ ++.|.+||+.+++.+..+.. ...+.+++|+|++++|++++.++.|++||+.+++.+..+...
T Consensus 270 l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 270 IYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 9888 88999999999998887764 345779999999998888888999999999999988877544
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.73 E-value=1.3e-15 Score=165.56 Aligned_cols=239 Identities=12% Similarity=0.174 Sum_probs=185.1
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCC------------------------CeEEEEECCCCceEEEec-CCCCCeEEEEEcCC
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGED------------------------HKVNLWAIGKPNAILSLS-GHTSGIDSVSFDSS 70 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~D------------------------g~V~IWdl~~~~~i~~l~-~h~~~V~~l~fspd 70 (819)
-+.|.+++++| +++++++...+ +.|.+||..+++.+..+. ++-.....++++++
T Consensus 23 l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 46799999999 56777777766 479999998888876665 44567899999999
Q ss_pred CCEEEEEECCCeEEEEECCCCe-EEEEE---------cCCCCCeEEEEEec-CCCEEEEEE-CCCcEEEEECCCCeEEEE
Q 003445 71 EVLVAAGAASGTIKLWDLEEAK-IVRTL---------TGHRSNCISVDFHP-FGEFFASGS-LDTNLKIWDIRKKGCIHT 138 (819)
Q Consensus 71 g~~Lasgs~DG~I~IWDl~s~~-~i~~l---------~~h~~~I~sl~fsp-~g~~Lasgs-~Dg~I~IwDi~t~~~i~~ 138 (819)
++++++...++.|.+||..... .+..+ .++......++|+| ++.++++.+ .++.|++|| .++..+..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence 9988888889999999986542 44555 24445788999999 788888876 689999999 56777776
Q ss_pred EecCC----------CCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEeCCCCEEEEE--
Q 003445 139 YKGHT----------RGVNAIRFTPD-GRWVVSGGEDNTVKLWDLTAGKLLHDFK--CHEGQIQCIDFHPHEFLLATG-- 203 (819)
Q Consensus 139 ~~~h~----------~~I~sl~fspd-g~~L~sgs~Dg~I~IwDl~t~~~i~~~~--~h~~~I~sl~fspdg~~Lasg-- 203 (819)
+.... .....++++|+ +.++++...++.|++||..+++.+..+. .+...+..++|+| +..+++.
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~ 259 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGK 259 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCC
Confidence 64222 33889999998 7777777788999999999899888875 3556789999999 4444333
Q ss_pred -----ECCCeEEEEECCCCeEEEEeC---CCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecC
Q 003445 204 -----SADRTVKFWDLETFELIGSAG---PETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP 257 (819)
Q Consensus 204 -----s~Dg~I~iwDl~~~~~l~~~~---~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~ 257 (819)
..+..|++||..+++.+..+. .+...+..++++|+|.++++...+ .|++|+.+.
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 334589999999999998874 556678999999999655555443 688888764
No 169
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.73 E-value=1.3e-16 Score=186.77 Aligned_cols=235 Identities=11% Similarity=0.085 Sum_probs=176.7
Q ss_pred EEEEeccC-CCEEEEEEeeCCCcEEEEEeC---CCeEEEEECC---CCceEEEecCCCCCeEEEEEcCCCC-EEEEEECC
Q 003445 9 LQEFVAHS-STVNCLKIGRKSSRVLVTGGE---DHKVNLWAIG---KPNAILSLSGHTSGIDSVSFDSSEV-LVAAGAAS 80 (819)
Q Consensus 9 l~~~~~H~-~~V~~lafsp~~~~~Latgs~---Dg~V~IWdl~---~~~~i~~l~~h~~~V~~l~fspdg~-~Lasgs~D 80 (819)
...+..|. ..|.+++|+|+ +++++++. +....||.+. .+... .+..+ ..+...+|+|+++ .+++.+.+
T Consensus 56 ~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~ 131 (582)
T 3o4h_A 56 TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATE 131 (582)
T ss_dssp EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECS
T ss_pred cEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCC
Confidence 34455566 58999999994 77887775 4555665442 23333 44432 2355678888875 33344445
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECC----CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 003445 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD----TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR 156 (819)
Q Consensus 81 G~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~D----g~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~ 156 (819)
+.+.+||+.+++.......+. .+++|+|||++|++++.+ +.|++||+.+++.. .+..|...+..++|+|||+
T Consensus 132 ~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~ 207 (582)
T 3o4h_A 132 DRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMK 207 (582)
T ss_dssp SCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSC
T ss_pred CCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCC
Confidence 556699999988766555333 789999999999988877 78999999888755 6677888899999999999
Q ss_pred EEEEEECCC--eEEEEECCCCeEEEEEecCCCCeEEEE--------EeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC
Q 003445 157 WVVSGGEDN--TVKLWDLTAGKLLHDFKCHEGQIQCID--------FHPHEFLLATGSADRTVKFWDLETFELIGSAGPE 226 (819)
Q Consensus 157 ~L~sgs~Dg--~I~IwDl~t~~~i~~~~~h~~~I~sl~--------fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~ 226 (819)
+|+++..++ .|++||+.+++.. .+..|...+..+. |+|||.++++++.|+++++|++ ++.+. ..
T Consensus 208 ~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~ 281 (582)
T 3o4h_A 208 VTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---AP 281 (582)
T ss_dssp EEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CC
T ss_pred EEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cC
Confidence 999888888 8999999998887 6677776666666 9999999999999999999999 66554 33
Q ss_pred CCCeeEEEEeCCCCEEEEEECCC--EEEEEecCC
Q 003445 227 TSGVRCLTFNPDGRTLLCGLHES--LKVFSWEPI 258 (819)
Q Consensus 227 ~~~I~sl~fspdg~~Lasgs~d~--I~Vwd~~~~ 258 (819)
.+.+.+++|+ +|+++++++.+. -.+|.++..
T Consensus 282 ~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 282 QGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp SSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred CCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 4678999999 999888766552 556666543
No 170
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.73 E-value=2.6e-15 Score=159.95 Aligned_cols=247 Identities=13% Similarity=0.107 Sum_probs=189.1
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (819)
..++..+..+.....+++|+|++..+++++..++.|..|+..++ ...+..+...+.+++|+++++++++...++.|.+
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 34566777788889999999966558899999999999999876 5666667788999999999998877766789999
Q ss_pred EECCCCeEEEEEcCC----CCCeEEEEEecCCCEEEEE----E-------------CCCcEEEEECCCCeEEEEEecCCC
Q 003445 86 WDLEEAKIVRTLTGH----RSNCISVDFHPFGEFFASG----S-------------LDTNLKIWDIRKKGCIHTYKGHTR 144 (819)
Q Consensus 86 WDl~s~~~i~~l~~h----~~~I~sl~fsp~g~~Lasg----s-------------~Dg~I~IwDi~t~~~i~~~~~h~~ 144 (819)
||..+++........ ...+..+++.|+|+++++. + ..+.|+.|+.. ++ +..+..+..
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~ 172 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRV 172 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCS
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCC
Confidence 999888765443321 2245679999999988873 2 13466666665 44 444555667
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECC-CCeE---EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEE
Q 003445 145 GVNAIRFTPDGRWVVSGGEDNTVKLWDLT-AGKL---LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI 220 (819)
Q Consensus 145 ~I~sl~fspdg~~L~sgs~Dg~I~IwDl~-t~~~---i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l 220 (819)
....++|+|+|+.+++.+.++.|.+||+. +++. ...+..+.+.+.+++++++|+++++. ++.|.+||.. ++.+
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~ 249 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDEL 249 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEE
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEE
Confidence 78999999999998777778999999987 5554 23333345567789999999876666 8899999987 7777
Q ss_pred EEeCCCCCCeeEEEE-eCCCCEEEEEECCCEEEEEecCCce
Q 003445 221 GSAGPETSGVRCLTF-NPDGRTLLCGLHESLKVFSWEPIRC 260 (819)
Q Consensus 221 ~~~~~~~~~I~sl~f-spdg~~Lasgs~d~I~Vwd~~~~~~ 260 (819)
..+..+.. +.+++| .|+++.|++++.+++.-++.++.+.
T Consensus 250 ~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 250 GRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGL 289 (296)
T ss_dssp EEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCBC
T ss_pred EEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEcccccc
Confidence 77776666 899999 5899999999888766666665543
No 171
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.72 E-value=5.3e-17 Score=194.80 Aligned_cols=280 Identities=8% Similarity=0.033 Sum_probs=190.6
Q ss_pred CEEEEEEeeCCCcEEEEEeC---------CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003445 18 TVNCLKIGRKSSRVLVTGGE---------DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latgs~---------Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (819)
.|.+++|+| ++++|+.++. ++.|++||+.+++.+... .....+..++|+|||+.|+.+. ++.|++||+
T Consensus 61 ~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~ 137 (719)
T 1z68_A 61 NASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQR 137 (719)
T ss_dssp TCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESS
T ss_pred ceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeC
Confidence 489999999 5566776655 689999999888762111 1235689999999999999875 789999999
Q ss_pred CCCeEEEEE-cCCCCCe-----------------EEEEEecCCCEEEEEECCC---------------------------
Q 003445 89 EEAKIVRTL-TGHRSNC-----------------ISVDFHPFGEFFASGSLDT--------------------------- 123 (819)
Q Consensus 89 ~s~~~i~~l-~~h~~~I-----------------~sl~fsp~g~~Lasgs~Dg--------------------------- 123 (819)
.+++..+.. .++...+ .+++|+|||++|++++.|.
T Consensus 138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~ 217 (719)
T 1z68_A 138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKA 217 (719)
T ss_dssp TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBT
T ss_pred CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCC
Confidence 988765433 2333322 4899999999999987652
Q ss_pred -------cEEEEECCCCeEE---E-----EEecCCCCeEEEEEcCCCCEEEEEECC----CeEEEEE----CCCCeEEEE
Q 003445 124 -------NLKIWDIRKKGCI---H-----TYKGHTRGVNAIRFTPDGRWVVSGGED----NTVKLWD----LTAGKLLHD 180 (819)
Q Consensus 124 -------~I~IwDi~t~~~i---~-----~~~~h~~~I~sl~fspdg~~L~sgs~D----g~I~IwD----l~t~~~i~~ 180 (819)
.|++||+.+++.. . .+.+|...+..++|+||++++++.... ..|.+|| ..++++...
T Consensus 218 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~ 297 (719)
T 1z68_A 218 GAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKT 297 (719)
T ss_dssp TSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGG
T ss_pred CCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEE
Confidence 7889999887642 1 123577889999999998877765433 2488999 877766544
Q ss_pred E----ecCCCCeE-----EEEEeCCCCEEEE--EECCC--eEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC
Q 003445 181 F----KCHEGQIQ-----CIDFHPHEFLLAT--GSADR--TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (819)
Q Consensus 181 ~----~~h~~~I~-----sl~fspdg~~Las--gs~Dg--~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (819)
+ ..|.+.+. .+.|+|||+.|+. +..+| .|++||+.+++ ...+..+...+..+.++ +++.|+....
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~ 375 (719)
T 1z68_A 298 QEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSN 375 (719)
T ss_dssp GEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEES
T ss_pred EecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEe
Confidence 4 35666666 7899999986554 44555 67888887776 34455555668888877 8777775543
Q ss_pred ------CCEEEEEecC--Cc-eeeeeec----cccceeEeE-ecCCCEEEE-EEcC--CeEEEEEecCCcee
Q 003445 248 ------ESLKVFSWEP--IR-CHDAVDV----GWSRLSDLN-VHEGKLLGC-SYNQ--SCVGVWVVDISRIE 302 (819)
Q Consensus 248 ------d~I~Vwd~~~--~~-~~~~~~~----~~s~i~~l~-~~dg~lLa~-~~~D--g~V~IW~ld~~~~~ 302 (819)
+..++|.++. +. ....+.. +...+.... .++++.++. ++.. ..+.+|++..++..
T Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~ 447 (719)
T 1z68_A 376 EFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEI 447 (719)
T ss_dssp CGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEE
T ss_pred cCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEE
Confidence 3488898865 21 1122211 112223333 366666654 3332 46888888766643
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.69 E-value=1.8e-15 Score=179.65 Aligned_cols=251 Identities=12% Similarity=0.045 Sum_probs=175.4
Q ss_pred EEEEeccCCCEE---------EEEEe--eCCCc-EEEEEeCCCeEEEEECC--CCceEEEecC-----CCCCeEEEEEcC
Q 003445 9 LQEFVAHSSTVN---------CLKIG--RKSSR-VLVTGGEDHKVNLWAIG--KPNAILSLSG-----HTSGIDSVSFDS 69 (819)
Q Consensus 9 l~~~~~H~~~V~---------~lafs--p~~~~-~Latgs~Dg~V~IWdl~--~~~~i~~l~~-----h~~~V~~l~fsp 69 (819)
.+.+..|...|. ...|+ |++.. ++++...+..|.+|++. .......+.. |...+..++|+|
T Consensus 60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp 139 (662)
T 3azo_A 60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP 139 (662)
T ss_dssp EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET
T ss_pred cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC
Confidence 455666766666 66676 86665 44444446777777765 2034455555 667889999999
Q ss_pred CCCEEEEEECC----------CeEEEEECCC------CeEEEEEc-CCCCCeEEEEEecCCCEEEEEECC--------Cc
Q 003445 70 SEVLVAAGAAS----------GTIKLWDLEE------AKIVRTLT-GHRSNCISVDFHPFGEFFASGSLD--------TN 124 (819)
Q Consensus 70 dg~~Lasgs~D----------G~I~IWDl~s------~~~i~~l~-~h~~~I~sl~fsp~g~~Lasgs~D--------g~ 124 (819)
||+.|++++.+ ..|++||+.+ ++. ..+. .+...+..++|+|||++|+.++.+ ..
T Consensus 140 Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~ 218 (662)
T 3azo_A 140 ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTE 218 (662)
T ss_dssp TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEE
T ss_pred CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcE
Confidence 99999988876 5899999988 554 3444 556678889999999999988755 37
Q ss_pred EEEEECC-CC---eEEEEEecCCCCeEEEEEcCCCCEEEEEECCC--eEEEEECCCCeEEEEEecCCCC--------eEE
Q 003445 125 LKIWDIR-KK---GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN--TVKLWDLTAGKLLHDFKCHEGQ--------IQC 190 (819)
Q Consensus 125 I~IwDi~-t~---~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg--~I~IwDl~t~~~i~~~~~h~~~--------I~s 190 (819)
|++||+. ++ ........|...+..+.|+|||++++++..++ .|.+||+.+++.......+... +..
T Consensus 219 i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~ 298 (662)
T 3azo_A 219 LKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRW 298 (662)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCS
T ss_pred EEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCce
Confidence 9999998 56 44444555678899999999999888887788 6777887777655433322221 567
Q ss_pred EEEeCCCCEEEEEECCCeEEEE--ECCCCeEEEEeCCCCCCeeEE-EEeCCCCEEEEEECC-CEEEEEec--CCceee
Q 003445 191 IDFHPHEFLLATGSADRTVKFW--DLETFELIGSAGPETSGVRCL-TFNPDGRTLLCGLHE-SLKVFSWE--PIRCHD 262 (819)
Q Consensus 191 l~fspdg~~Lasgs~Dg~I~iw--Dl~~~~~l~~~~~~~~~I~sl-~fspdg~~Lasgs~d-~I~Vwd~~--~~~~~~ 262 (819)
++|+|++.++++++. +.++|| |+.+++ +..+..+...+..+ +++.+.-++++++.+ ...+|.++ +++...
T Consensus 299 ~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 299 FAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRART 374 (662)
T ss_dssp EEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred EeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence 899999999999998 998888 666665 56676666667766 554333233344444 24555554 555443
No 173
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.68 E-value=1.5e-15 Score=183.67 Aligned_cols=245 Identities=14% Similarity=0.123 Sum_probs=178.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCC-----eEEEEEecCCCEEEEEECC---------CcE
Q 003445 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSN-----CISVDFHPFGEFFASGSLD---------TNL 125 (819)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~-----I~sl~fsp~g~~Lasgs~D---------g~I 125 (819)
.....+.|+||+++++++ ||.|++||+.+++....+.+|... ...+.|+|||++|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346689999999998886 999999999999988888877643 2347899999999998876 667
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE-ecCCCCe----------------
Q 003445 126 KIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF-KCHEGQI---------------- 188 (819)
Q Consensus 126 ~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~-~~h~~~I---------------- 188 (819)
++||+.+++.. .+..|...+...+|+|||++|+.+ .++.|++||+.+++..... .++...+
T Consensus 95 ~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 95 DIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp EEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred EEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence 89999998754 456677889999999999999988 4789999999888754422 2222222
Q ss_pred -EEEEEeCCCCEEEEEECCC------------------------------------eEEEEECCC---C---eEEEEeC-
Q 003445 189 -QCIDFHPHEFLLATGSADR------------------------------------TVKFWDLET---F---ELIGSAG- 224 (819)
Q Consensus 189 -~sl~fspdg~~Lasgs~Dg------------------------------------~I~iwDl~~---~---~~l~~~~- 224 (819)
..+.|+|||+.||.++.|. .|++||+.+ + +......
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~ 252 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP 252 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence 3489999999999875321 588899998 7 4333222
Q ss_pred ----CCCCCeeEEEEeCCCCEEEEEECC-----CEEEEEecCCc----eeeee------eccccc---e-eEeEecCCCE
Q 003445 225 ----PETSGVRCLTFNPDGRTLLCGLHE-----SLKVFSWEPIR----CHDAV------DVGWSR---L-SDLNVHEGKL 281 (819)
Q Consensus 225 ----~~~~~I~sl~fspdg~~Lasgs~d-----~I~Vwd~~~~~----~~~~~------~~~~s~---i-~~l~~~dg~l 281 (819)
.+...+..++|+|||+.++..... .|.+||.++++ |.... ...|-. . .....+||+.
T Consensus 253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~ 332 (740)
T 4a5s_A 253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS 332 (740)
T ss_dssp HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence 266778999999999977655332 38889988877 43322 222322 1 2234589987
Q ss_pred EE-EEEcC---CeEEEEEecCCceeeeeecc
Q 003445 282 LG-CSYNQ---SCVGVWVVDISRIEPYTIGS 308 (819)
Q Consensus 282 La-~~~~D---g~V~IW~ld~~~~~p~~~~~ 308 (819)
++ ..+.. ..|++|++++++..++..+.
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~ 363 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKKDCTFITKGT 363 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCSSCEESCCSS
T ss_pred EEEEEEcCCCceEEEEEECCCCceEecccCC
Confidence 76 55543 46888888888877766553
No 174
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.68 E-value=3.9e-13 Score=141.56 Aligned_cols=283 Identities=7% Similarity=0.002 Sum_probs=195.7
Q ss_pred EEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEE-ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILS-LSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (819)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~-l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (819)
.+..+...+.++++.+ +++++++...++.|.+||.. +..... +..+...+.++++++++.++++...++.|..||..
T Consensus 9 ~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 9 NLTNQDTGPYGITVSD-KGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp ECCSSSCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred cCCCcCCCccceEECC-CCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 3445667899999998 56666665557899999987 544332 23355789999999999988877668899999986
Q ss_pred CCeEEE-EEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003445 90 EAKIVR-TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT-YKGHTRGVNAIRFTPDGRWVVSGGEDNTV 167 (819)
Q Consensus 90 s~~~i~-~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~-~~~h~~~I~sl~fspdg~~L~sgs~Dg~I 167 (819)
++... .+......+..+++.+++.++++...++.|..||. +++.... ...+...+..+++.++|+.+++...++.|
T Consensus 87 -g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 164 (299)
T 2z2n_A 87 -GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI 164 (299)
T ss_dssp -SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred -CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence 44322 22234567899999999988887777889999998 5544322 23345678999999999877777677899
Q ss_pred EEEECCCCeEEEE-EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEE-eCCCCCCeeEEEEeCCCCEEEEE
Q 003445 168 KLWDLTAGKLLHD-FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS-AGPETSGVRCLTFNPDGRTLLCG 245 (819)
Q Consensus 168 ~IwDl~t~~~i~~-~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~-~~~~~~~I~sl~fspdg~~Lasg 245 (819)
..||. +++.... .......+.+++++++|.++++...++.|.+||. +++.... .......+.+++++++|+++++.
T Consensus 165 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 165 GRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTE 242 (299)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred EEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEec
Confidence 99999 6665432 2233456889999999997777767889999999 6664432 33345678999999999866665
Q ss_pred E-CCCEEEEEecCCceeee-eeccccceeEeEecCCCEEEEEEcCCeEEEEEecCCce
Q 003445 246 L-HESLKVFSWEPIRCHDA-VDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRI 301 (819)
Q Consensus 246 s-~d~I~Vwd~~~~~~~~~-~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~ 301 (819)
. .+.|.+|+.+ .+.... +..+......+...++.++++.. .+.|..++.+..++
T Consensus 243 ~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~~~g~l~v~~~-~~~l~~~~~~~~~~ 298 (299)
T 2z2n_A 243 WGANKIGRLTSN-NIIEEYPIQIKSAEPHGICFDGETIWFAME-CDKIGKLTLIKDNM 298 (299)
T ss_dssp TTTTEEEEEETT-TEEEEEECSSSSCCEEEEEECSSCEEEEET-TTEEEEEEEC----
T ss_pred cCCceEEEECCC-CceEEEeCCCCCCccceEEecCCCEEEEec-CCcEEEEEcCcccC
Confidence 3 3568888873 332221 12223345555556666665544 66777777766543
No 175
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.68 E-value=1.6e-15 Score=166.72 Aligned_cols=262 Identities=11% Similarity=0.014 Sum_probs=182.2
Q ss_pred EEEECCCCceEEEecCCCCC-----eEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEcCCCCCeEEEEEecCC
Q 003445 42 NLWAIGKPNAILSLSGHTSG-----IDSVSFDSSEVLVAAGAAS---GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG 113 (819)
Q Consensus 42 ~IWdl~~~~~i~~l~~h~~~-----V~~l~fspdg~~Lasgs~D---G~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g 113 (819)
..+|..++..+..+..+... +.+++|+|||++|+..... ..|.+||+.+++......++......+.|+|+|
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg 92 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE 92 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC
Confidence 34577788877777765443 7788999999998877543 478999999888655444333333347899999
Q ss_pred CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEE-------------------EEEcCCCCEEEEE-----ECCCeEEE
Q 003445 114 EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNA-------------------IRFTPDGRWVVSG-----GEDNTVKL 169 (819)
Q Consensus 114 ~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~s-------------------l~fspdg~~L~sg-----s~Dg~I~I 169 (819)
++|+.++.++.|++||+.+++.......+...... +.|+|++++++.+ ..+..|++
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~ 172 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK 172 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence 99999999999999999988876666544443222 3567777766654 35678999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEeC-CCCEEEEEECC------CeEEEEECCCCeEEEEeCCC-CCCeeEEEEeCCCCE
Q 003445 170 WDLTAGKLLHDFKCHEGQIQCIDFHP-HEFLLATGSAD------RTVKFWDLETFELIGSAGPE-TSGVRCLTFNPDGRT 241 (819)
Q Consensus 170 wDl~t~~~i~~~~~h~~~I~sl~fsp-dg~~Lasgs~D------g~I~iwDl~~~~~l~~~~~~-~~~I~sl~fspdg~~ 241 (819)
||+.+++..... .+...+..+.|+| ++..|+..+.+ ..|++||+..++........ ...+..+.|+|||++
T Consensus 173 ~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~ 251 (396)
T 3c5m_A 173 VDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA 251 (396)
T ss_dssp EETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC
T ss_pred EECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE
Confidence 999988765554 3567789999999 78877776643 46899998766543333321 235788999999998
Q ss_pred EEEEECC----C--EEEEEecCCceeeeeeccccceeEeEec-CCCEEEEEE----------------cCCeEEEEEecC
Q 003445 242 LLCGLHE----S--LKVFSWEPIRCHDAVDVGWSRLSDLNVH-EGKLLGCSY----------------NQSCVGVWVVDI 298 (819)
Q Consensus 242 Lasgs~d----~--I~Vwd~~~~~~~~~~~~~~s~i~~l~~~-dg~lLa~~~----------------~Dg~V~IW~ld~ 298 (819)
|+..+.+ . |.+|++.+++......... ......+ +|++++++. .+..|++|+++.
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~--~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 252 MAYVSYFKGQTDRVIYKANPETLENEEVMVMPP--CSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp EEEEEEETTTCCEEEEEECTTTCCEEEEEECCS--EEEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred EEEEecCCCCccceEEEEECCCCCeEEeeeCCC--CCCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence 7765332 3 7888887766544332221 1123336 899888765 347899999988
Q ss_pred Cceeeeee
Q 003445 299 SRIEPYTI 306 (819)
Q Consensus 299 ~~~~p~~~ 306 (819)
++...+..
T Consensus 330 ~~~~~l~~ 337 (396)
T 3c5m_A 330 KSAQKLCK 337 (396)
T ss_dssp TBCCEEEE
T ss_pred CceEEccC
Confidence 87665443
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=1.7e-14 Score=156.71 Aligned_cols=239 Identities=14% Similarity=0.176 Sum_probs=184.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECC------------------------CeEEEEECCCCeEEEEEc-CCCCCeEEEEEecCC
Q 003445 59 TSGIDSVSFDSSEVLVAAGAAS------------------------GTIKLWDLEEAKIVRTLT-GHRSNCISVDFHPFG 113 (819)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~D------------------------G~I~IWDl~s~~~i~~l~-~h~~~I~sl~fsp~g 113 (819)
-+.+.+++++++|+++++...+ +.|.+||..+++.+..+. ++-.....++++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4579999999999999887776 479999999999877665 344678999999999
Q ss_pred CEEEEEECCCcEEEEECCCCe-EEEEE---------ecCCCCeEEEEEcC-CCCEEEEEE-CCCeEEEEECCCCeEEEEE
Q 003445 114 EFFASGSLDTNLKIWDIRKKG-CIHTY---------KGHTRGVNAIRFTP-DGRWVVSGG-EDNTVKLWDLTAGKLLHDF 181 (819)
Q Consensus 114 ~~Lasgs~Dg~I~IwDi~t~~-~i~~~---------~~h~~~I~sl~fsp-dg~~L~sgs-~Dg~I~IwDl~t~~~i~~~ 181 (819)
+++++...++.|++||..... .+..+ ..+......++|+| +|.++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999986542 45555 23445688999999 788888876 689999999 567777776
Q ss_pred ecCC----------CCeEEEEEeCC-CCEEEEEECCCeEEEEECCCCeEEEEeC--CCCCCeeEEEEeCCCCEEEEEE--
Q 003445 182 KCHE----------GQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIGSAG--PETSGVRCLTFNPDGRTLLCGL-- 246 (819)
Q Consensus 182 ~~h~----------~~I~sl~fspd-g~~Lasgs~Dg~I~iwDl~~~~~l~~~~--~~~~~I~sl~fspdg~~Lasgs-- 246 (819)
.... .....++++|+ +.++++...++.|++||..+++.+..+. .+...+..++|+| |..+....
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~ 260 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP 260 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence 4322 23789999998 7778888889999999999899888874 4456789999999 43333321
Q ss_pred ------CCCEEEEEecCCceeeeee---ccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCC
Q 003445 247 ------HESLKVFSWEPIRCHDAVD---VGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDIS 299 (819)
Q Consensus 247 ------~d~I~Vwd~~~~~~~~~~~---~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~ 299 (819)
...+.+|+..+++....+. ........+.+ ++|.++++...++.|++|+++..
T Consensus 261 ~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred EeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 1258899988888777763 33444555555 67888888888999999998753
No 177
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.67 E-value=2e-14 Score=158.85 Aligned_cols=263 Identities=11% Similarity=0.039 Sum_probs=188.1
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEEEe----------CCCeEEEEECCCCceEEEecCC------CCCeEEEEEcCCCC
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGG----------EDHKVNLWAIGKPNAILSLSGH------TSGIDSVSFDSSEV 72 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Latgs----------~Dg~V~IWdl~~~~~i~~l~~h------~~~V~~l~fspdg~ 72 (819)
+..+..+..+ .++|+| ++++|+++. .++.|.+||..+.+.+..+... ......++|+|+|+
T Consensus 44 ~~~i~~g~~p--~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~ 120 (361)
T 2oiz_A 44 LGMVPTAFNG--HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK 120 (361)
T ss_dssp EEEEECCEEE--EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS
T ss_pred EEEecCCCCC--ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC
Confidence 4456555555 899999 555666664 3678999999998888877632 34678899999999
Q ss_pred EEEEEEC--CCeEEEEECCCCeEEEE-EcCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCC-CeEEEEE------ec
Q 003445 73 LVAAGAA--SGTIKLWDLEEAKIVRT-LTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRK-KGCIHTY------KG 141 (819)
Q Consensus 73 ~Lasgs~--DG~I~IWDl~s~~~i~~-l~~h~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~t-~~~i~~~------~~ 141 (819)
+|+++.. ++.|.+||+.+++.+.. +.. . ....+.+.|++ ..+++.+.||.+.+|++.. ++..... ..
T Consensus 121 ~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~ 198 (361)
T 2oiz_A 121 FIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV 198 (361)
T ss_dssp EEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT
T ss_pred EEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC
Confidence 9998864 58999999999998887 542 2 23446677776 5788889999999999865 5544222 12
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEecC------C----CCeEEEEEeCCCCEEEEEEC----
Q 003445 142 HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK--LLHDFKCH------E----GQIQCIDFHPHEFLLATGSA---- 205 (819)
Q Consensus 142 h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~--~i~~~~~h------~----~~I~sl~fspdg~~Lasgs~---- 205 (819)
+..++ .+.+++++..++..+.++.|.+||+..+. .+..+... . .....++|+|++..++++..
T Consensus 199 ~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~ 277 (361)
T 2oiz_A 199 KDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGK 277 (361)
T ss_dssp TTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCC
T ss_pred CCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCC
Confidence 22222 33446777778878889999999997553 22222210 0 11123789999887777643
Q ss_pred -------CCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCC--ceeeee-eccccceeEeE
Q 003445 206 -------DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPI--RCHDAV-DVGWSRLSDLN 275 (819)
Q Consensus 206 -------Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~--~~~~~~-~~~~s~i~~l~ 275 (819)
.+.|.+||+.+++.+..+..+. +.+++|+|||++|+++..+.+.+||..+. +....+ ..+..+.....
T Consensus 278 ~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~ 355 (361)
T 2oiz_A 278 EGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLRTIEGAAEASLQVQF 355 (361)
T ss_dssp TTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEEEETTSCSSEEEEEE
T ss_pred cccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeEEeccCCCCcEEEEe
Confidence 3489999999999999988776 89999999999999887778999999998 877765 44444443333
Q ss_pred ecCC
Q 003445 276 VHEG 279 (819)
Q Consensus 276 ~~dg 279 (819)
.++|
T Consensus 356 ~p~G 359 (361)
T 2oiz_A 356 HPVG 359 (361)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 3444
No 178
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.67 E-value=1.8e-14 Score=159.33 Aligned_cols=259 Identities=13% Similarity=0.089 Sum_probs=191.0
Q ss_pred CCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCeEEEEECCCCeEEEEEcCC------
Q 003445 37 EDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA----------ASGTIKLWDLEEAKIVRTLTGH------ 100 (819)
Q Consensus 37 ~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs----------~DG~I~IWDl~s~~~i~~l~~h------ 100 (819)
.|+.|.+||..+++.+..+..+..+ .++|+||+++++++. .++.|.+||+.+++.+..+...
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 3689999999999998888876555 899999999999886 3678999999999988877632
Q ss_pred CCCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCeEEEE-EecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCC-C
Q 003445 101 RSNCISVDFHPFGEFFASGSL--DTNLKIWDIRKKGCIHT-YKGHTRGVNAIRFTPDG-RWVVSGGEDNTVKLWDLTA-G 175 (819)
Q Consensus 101 ~~~I~sl~fsp~g~~Lasgs~--Dg~I~IwDi~t~~~i~~-~~~h~~~I~sl~fspdg-~~L~sgs~Dg~I~IwDl~t-~ 175 (819)
......++|+|+|++|+++.. ++.|.+||+.+++.+.. +.. . ....+.+.|++ ..+++.+.||.+.+|++.. +
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g 184 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDG 184 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence 234567999999999998874 58999999999988877 542 2 23446677865 6788888999999999865 5
Q ss_pred eEEEEE------ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe--EEEEeCCC----------CCCeeEEEEeC
Q 003445 176 KLLHDF------KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE--LIGSAGPE----------TSGVRCLTFNP 237 (819)
Q Consensus 176 ~~i~~~------~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~--~l~~~~~~----------~~~I~sl~fsp 237 (819)
+..... .....++ .+.+.+++..++..+.++.|.+||+.... .+..+... ......++|+|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~ 263 (361)
T 2oiz_A 185 KVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR 263 (361)
T ss_dssp SEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET
T ss_pred cEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec
Confidence 544221 2222222 33446777777888889999999997543 22221110 11223478999
Q ss_pred CCCEEEEEEC------------CCEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEEecCC--cee
Q 003445 238 DGRTLLCGLH------------ESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDIS--RIE 302 (819)
Q Consensus 238 dg~~Lasgs~------------d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~--~~~ 302 (819)
+++.++++.. +.+.+||..+.+....+..+. .......++|++|+++.. +.|.+||+.++ +..
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~ 340 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLL 340 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEE
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceee
Confidence 9888887643 258899999999988888777 444444589998888776 99999999998 544
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.66 E-value=1.2e-13 Score=148.90 Aligned_cols=245 Identities=10% Similarity=0.046 Sum_probs=178.3
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC----CeEE
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS----GTIK 84 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D----G~I~ 84 (819)
+..+..+...+.+++|++ ++++++++..++.|.+||..+++.......+...+.+++|+++++++++...+ +.|.
T Consensus 37 ~~~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp EEEEESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred eEEEeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence 445667778899999998 56677788889999999998877665554567789999999999988877666 6899
Q ss_pred EEECCCCeEEEEEc--CCCCCeEEEEEecCCCEEEEEEC------CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 003445 85 LWDLEEAKIVRTLT--GHRSNCISVDFHPFGEFFASGSL------DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR 156 (819)
Q Consensus 85 IWDl~s~~~i~~l~--~h~~~I~sl~fsp~g~~Lasgs~------Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~ 156 (819)
+||..+++....+. .+...+.+++++|+|+++++... .+.|+.||..+++..... .+...+..++|+|+|+
T Consensus 116 ~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 116 AATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEK 194 (333)
T ss_dssp EECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSS
T ss_pred EEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCC
Confidence 99998877654443 24457899999999987776653 356777776655543332 2334578999999998
Q ss_pred EEEEE-ECCCeEEEEECCC-CeEEEEE-----ecC--CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCC
Q 003445 157 WVVSG-GEDNTVKLWDLTA-GKLLHDF-----KCH--EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET 227 (819)
Q Consensus 157 ~L~sg-s~Dg~I~IwDl~t-~~~i~~~-----~~h--~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~ 227 (819)
+|+.+ ..++.|.+||+.+ +..+..+ ... ...+..++++++|.++++...++.|.+||. .++.+..+....
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~ 273 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG 273 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTT
T ss_pred EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCC
Confidence 66554 4578999999964 3322211 111 136788999999998888888899999998 466666665443
Q ss_pred C------CeeEEEEeCCCCEEEEEECC-----CEEEEEec
Q 003445 228 S------GVRCLTFNPDGRTLLCGLHE-----SLKVFSWE 256 (819)
Q Consensus 228 ~------~I~sl~fspdg~~Lasgs~d-----~I~Vwd~~ 256 (819)
. .+.+++|++|+..|++++.+ ...||.++
T Consensus 274 ~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~ 313 (333)
T 2dg1_A 274 RDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVN 313 (333)
T ss_dssp GGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEE
T ss_pred CccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEe
Confidence 2 58999999998777755443 24555554
No 180
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.65 E-value=3.3e-14 Score=153.44 Aligned_cols=275 Identities=13% Similarity=0.064 Sum_probs=192.7
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~ 96 (819)
..|.+++|+++ ...++....++.++.| .+.....+..+...+.+++|++++++++++..++.|.+||..+++....
T Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGK-SNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP 81 (333)
T ss_dssp CCCCBCCSCGG-GGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred cccceeeecCC-ccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE
Confidence 45788899984 4445555778889999 4566777777888889999999999888888899999999998887665
Q ss_pred EcCCCCCeEEEEEecCCCEEEEEECC----CcEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEEC------C
Q 003445 97 LTGHRSNCISVDFHPFGEFFASGSLD----TNLKIWDIRKKGCIHTYK--GHTRGVNAIRFTPDGRWVVSGGE------D 164 (819)
Q Consensus 97 l~~h~~~I~sl~fsp~g~~Lasgs~D----g~I~IwDi~t~~~i~~~~--~h~~~I~sl~fspdg~~L~sgs~------D 164 (819)
...+...+.+++|+++++++++...+ +.|++||..++.....+. .+...+..++++|+|+++++... .
T Consensus 82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~ 161 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL 161 (333)
T ss_dssp EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCC
Confidence 54567789999999999888777666 689999998876553333 23457899999999987776653 3
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEE-ECCCeEEEEECCC-CeEEE--------EeCCCCCCeeEEE
Q 003445 165 NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATG-SADRTVKFWDLET-FELIG--------SAGPETSGVRCLT 234 (819)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasg-s~Dg~I~iwDl~~-~~~l~--------~~~~~~~~I~sl~ 234 (819)
+.|..||..+++..... .....+..++|+|++++|+.+ +.++.|++||+.+ +..+. .+..+ ..+..++
T Consensus 162 ~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~ 239 (333)
T 2dg1_A 162 GGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCC 239 (333)
T ss_dssp EEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEE
T ss_pred ceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceE
Confidence 56777777665543322 233457899999999866544 4578999999963 33221 11222 4578899
Q ss_pred EeCCCCEEEEEEC-CCEEEEEecCCceeeeeecccc------ceeEeEe-cCCCEEEEEEcCC----eEEEEEecC
Q 003445 235 FNPDGRTLLCGLH-ESLKVFSWEPIRCHDAVDVGWS------RLSDLNV-HEGKLLGCSYNQS----CVGVWVVDI 298 (819)
Q Consensus 235 fspdg~~Lasgs~-d~I~Vwd~~~~~~~~~~~~~~s------~i~~l~~-~dg~lLa~~~~Dg----~V~IW~ld~ 298 (819)
++++|+++++... +.|.+|+.+ .+....+..... ....+.+ ++++.|.++..++ .-.||.++.
T Consensus 240 ~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~ 314 (333)
T 2dg1_A 240 IDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 314 (333)
T ss_dssp EBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred ECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence 9999998777655 468888874 444444443322 3444444 5666666555543 344555443
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.65 E-value=1.8e-13 Score=144.42 Aligned_cols=236 Identities=14% Similarity=0.222 Sum_probs=175.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC------CCCCeEEEEEe-cCCCEEEEEEC-CCcEEEE
Q 003445 57 GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG------HRSNCISVDFH-PFGEFFASGSL-DTNLKIW 128 (819)
Q Consensus 57 ~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~------h~~~I~sl~fs-p~g~~Lasgs~-Dg~I~Iw 128 (819)
++-..+.+++++++++++++...++.|.+||.. ++.+..+.. +...+..+++. +++.++++... ++.|++|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678999999999988888889999999987 666666642 34578899995 66665555533 7899999
Q ss_pred ECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEeCCCCEEEEEEC
Q 003445 129 DIRKKGCIHTYKG-HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK--CHEGQIQCIDFHPHEFLLATGSA 205 (819)
Q Consensus 129 Di~t~~~i~~~~~-h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~--~h~~~I~sl~fspdg~~Lasgs~ 205 (819)
| .+++.+..+.. +...+..++++++|+++++...++.|.+||.. ++.+..+. .+...+..++++++|.++++...
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 9 56777766643 34568999999999988877778999999964 66666664 34456899999999998888888
Q ss_pred CCeEEEEECCCCeEEEEeCCC--CCCeeEEEEeCCCCEEEEEECC--CEEEEEecCCceeeeeecccc--ceeEeEe-cC
Q 003445 206 DRTVKFWDLETFELIGSAGPE--TSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDVGWS--RLSDLNV-HE 278 (819)
Q Consensus 206 Dg~I~iwDl~~~~~l~~~~~~--~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~~~~~~~~~s--~i~~l~~-~d 278 (819)
++.|++||.. ++.+..+... ...+..++++++|+++++...+ .|.+|+.+ .+....+..+.. ....+.+ ++
T Consensus 184 ~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~ 261 (286)
T 1q7f_A 184 AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDD 261 (286)
T ss_dssp GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETT
T ss_pred CCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCC
Confidence 9999999974 5566666543 3568999999999988877654 68999843 444444433322 2334444 67
Q ss_pred CCEEEEEEcCCeEEEEEecC
Q 003445 279 GKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 279 g~lLa~~~~Dg~V~IW~ld~ 298 (819)
|+++++ ..++.|++|++..
T Consensus 262 g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 262 GSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp TEEEEE-ETTTEEEEEECSC
T ss_pred CcEEEE-CCCCeEEEEEccc
Confidence 776666 5799999998754
No 182
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.63 E-value=8.4e-13 Score=154.58 Aligned_cols=275 Identities=15% Similarity=0.148 Sum_probs=202.3
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC--CCeEEEEEcCCCCCeE
Q 003445 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE--EAKIVRTLTGHRSNCI 105 (819)
Q Consensus 28 ~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~--s~~~i~~l~~h~~~I~ 105 (819)
++.++++...++.|.+||..+++.+..+.. ...+..+.|+||++++++++.++.|.+||+. +++.+..+.... ...
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~ 243 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EAR 243 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCc
Confidence 445677778899999999999999988874 3467899999999999999999999999995 888888887533 457
Q ss_pred EEEEe----cCCCEEEEEEC-CCcEEEEECCCCeEEEEEecC--------------------------------------
Q 003445 106 SVDFH----PFGEFFASGSL-DTNLKIWDIRKKGCIHTYKGH-------------------------------------- 142 (819)
Q Consensus 106 sl~fs----p~g~~Lasgs~-Dg~I~IwDi~t~~~i~~~~~h-------------------------------------- 142 (819)
.++|+ |+|+++++++. ++.|.+||..+.+.+..+...
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~ 323 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL 323 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence 89999 69998777664 589999999888877665311
Q ss_pred -----------------CCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEec-----CCCCeEEEEEeCCCCE
Q 003445 143 -----------------TRGVNAIRFTPDGRWVVSGG-EDNTVKLWDLTAGKLLHDFKC-----HEGQIQCIDFHPHEFL 199 (819)
Q Consensus 143 -----------------~~~I~sl~fspdg~~L~sgs-~Dg~I~IwDl~t~~~i~~~~~-----h~~~I~sl~fspdg~~ 199 (819)
......+.|+|+|++++++. .++.|.++|+.+++.+..+.. |.+.-..+ ++|++..
T Consensus 324 ~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~ 402 (567)
T 1qks_A 324 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGP 402 (567)
T ss_dssp EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEE
T ss_pred EEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCc
Confidence 01123567999999987766 578999999999998877654 32222222 6887544
Q ss_pred E-EEEE-CCCeEEEEECCC-------CeEEEEeCCCCCCeeEEEEeCCCCEEEEEE--------CCCEEEEEecCC----
Q 003445 200 L-ATGS-ADRTVKFWDLET-------FELIGSAGPETSGVRCLTFNPDGRTLLCGL--------HESLKVFSWEPI---- 258 (819)
Q Consensus 200 L-asgs-~Dg~I~iwDl~~-------~~~l~~~~~~~~~I~sl~fspdg~~Lasgs--------~d~I~Vwd~~~~---- 258 (819)
+ +++. .++.|.++|..+ ++.+..+......-..+.++|++++|.+.. .++|.|||..+.
T Consensus 403 v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g 482 (567)
T 1qks_A 403 VWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDG 482 (567)
T ss_dssp EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSS
T ss_pred EEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccc
Confidence 4 4543 468999999988 778888776544446678999999999876 248999999876
Q ss_pred --ceeeeeec--------cccceeEeEe-cCCCEEEEE-E----cCCeEEEEEecCCceeeee
Q 003445 259 --RCHDAVDV--------GWSRLSDLNV-HEGKLLGCS-Y----NQSCVGVWVVDISRIEPYT 305 (819)
Q Consensus 259 --~~~~~~~~--------~~s~i~~l~~-~dg~lLa~~-~----~Dg~V~IW~ld~~~~~p~~ 305 (819)
++..++.. .......+.+ .+|+.+.++ + .++.|.|+|..+.++....
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i 545 (567)
T 1qks_A 483 SDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVI 545 (567)
T ss_dssp SCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred cCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEe
Confidence 22234432 1223333433 678766554 3 3799999999988776443
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.63 E-value=5.8e-14 Score=168.78 Aligned_cols=242 Identities=8% Similarity=0.029 Sum_probs=176.1
Q ss_pred cCCCEEEEEEeeCCCcEEEEE-eCCC----eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCe-------
Q 003445 15 HSSTVNCLKIGRKSSRVLVTG-GEDH----KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGT------- 82 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latg-s~Dg----~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~------- 82 (819)
|...+..++|+|++. +|+.+ +.+| .|++||+.+++.......+ ..+..++|+||++.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 123 GTVALRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp SCEEEEEEEECTTSS-EEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCEEEEEEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 334688999999554 55544 4333 8999999998876643322 23678999999999999888766
Q ss_pred ---------EEEEECCCCe----EEEEEcCCCCCeEEEEEecCCCEEEEEEC-----CCcEEEEECCC------Ce-EEE
Q 003445 83 ---------IKLWDLEEAK----IVRTLTGHRSNCISVDFHPFGEFFASGSL-----DTNLKIWDIRK------KG-CIH 137 (819)
Q Consensus 83 ---------I~IWDl~s~~----~i~~l~~h~~~I~sl~fsp~g~~Lasgs~-----Dg~I~IwDi~t------~~-~i~ 137 (819)
|++|++.+++ .+.....|...+..+.|+|+|++|+.++. +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 9999998875 22222335566889999999999888765 56899999976 42 355
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCCCe--EEEEEecCCC--CeEEEEEeCCCCEEEEEECCCe-
Q 003445 138 TYKGHTRGVNAIRFTPDGRWVVSGGED----NTVKLWDLTAGK--LLHDFKCHEG--QIQCIDFHPHEFLLATGSADRT- 208 (819)
Q Consensus 138 ~~~~h~~~I~sl~fspdg~~L~sgs~D----g~I~IwDl~t~~--~i~~~~~h~~--~I~sl~fspdg~~Lasgs~Dg~- 208 (819)
.+..+...+.. .|+++|+.|+..+.. +.|.+||+.++. ....+..+.. .+..+.|++++.++++...|+.
T Consensus 281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~ 359 (710)
T 2xdw_A 281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (710)
T ss_dssp EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence 56666666655 588899988877653 369999998764 2234444433 6888999988888898888884
Q ss_pred -EEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE-C----CCEEEEEecCCc
Q 003445 209 -VKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL-H----ESLKVFSWEPIR 259 (819)
Q Consensus 209 -I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs-~----d~I~Vwd~~~~~ 259 (819)
|++||+.+++.+..+..+.+.+..+.++|++..++... . ..+.+||+.+++
T Consensus 360 ~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 360 TLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 67778877887777777777788999999998776442 2 247777777655
No 184
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.62 E-value=3.4e-13 Score=146.67 Aligned_cols=269 Identities=12% Similarity=0.039 Sum_probs=195.1
Q ss_pred CCCeEEEEECCCCceEEEec------CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEe
Q 003445 37 EDHKVNLWAIGKPNAILSLS------GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFH 110 (819)
Q Consensus 37 ~Dg~V~IWdl~~~~~i~~l~------~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fs 110 (819)
.++.|.+||..+++....+. ........+.+. +++++++...++.|.+||..+++.+..+. .......++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 37899999999888765442 122456778875 34555565668999999999999988886 34678899999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-----CCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCeEEEEEec
Q 003445 111 PFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT-----RGVNAIRFTPDGRWVVSGG--EDNTVKLWDLTAGKLLHDFKC 183 (819)
Q Consensus 111 p~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~-----~~I~sl~fspdg~~L~sgs--~Dg~I~IwDl~t~~~i~~~~~ 183 (819)
+++..+++...++.|.+||..+++....+.... .....+++ ++..|+.+. .++.|.+||..+++.+..+..
T Consensus 93 ~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~ 170 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI 170 (328)
T ss_dssp ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC
T ss_pred CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc
Confidence 888544444488999999999999887776433 14556777 355555555 488999999999998888775
Q ss_pred CCCCeEEEEEeCCCCEEEEEECC----------CeEEEEECCCCeEEEEeCCC-CCCeeEEEEeCCCCEEEEEECCCEEE
Q 003445 184 HEGQIQCIDFHPHEFLLATGSAD----------RTVKFWDLETFELIGSAGPE-TSGVRCLTFNPDGRTLLCGLHESLKV 252 (819)
Q Consensus 184 h~~~I~sl~fspdg~~Lasgs~D----------g~I~iwDl~~~~~l~~~~~~-~~~I~sl~fspdg~~Lasgs~d~I~V 252 (819)
. .....+.++|+|++++++..+ +.|.+||..+++....+... ......++|+|+++.|+++.. .+.+
T Consensus 171 g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~ 248 (328)
T 3dsm_A 171 G-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWR 248 (328)
T ss_dssp S-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEE
T ss_pred C-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEE
Confidence 3 345788999999977777655 78999999999887766432 346899999999999988755 7888
Q ss_pred EEecCCceee--eeeccccceeEeEe-c-CCCEEEEE----EcCCeEEEEEecCCceeeeeecccce
Q 003445 253 FSWEPIRCHD--AVDVGWSRLSDLNV-H-EGKLLGCS----YNQSCVGVWVVDISRIEPYTIGSVTR 311 (819)
Q Consensus 253 wd~~~~~~~~--~~~~~~s~i~~l~~-~-dg~lLa~~----~~Dg~V~IW~ld~~~~~p~~~~~~~~ 311 (819)
||..+.+... .+.........+.+ + ++.++++. ..++.|.+|+.+...+..+..+..+.
T Consensus 249 ~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~G~~P~ 315 (328)
T 3dsm_A 249 MPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGIIPG 315 (328)
T ss_dssp EETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEEEESEE
T ss_pred EECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEEeccCcc
Confidence 8887766432 12221233445555 3 56666676 67899999999955556555555443
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.62 E-value=2.3e-13 Score=163.61 Aligned_cols=273 Identities=12% Similarity=0.063 Sum_probs=183.7
Q ss_pred eCCCcEEEEEeCCC----eEEEEECCCCceEEEec------CCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCC
Q 003445 26 RKSSRVLVTGGEDH----KVNLWAIGKPNAILSLS------GHTSGIDSVSFDSSEVLVAAGAASG-----TIKLWDLEE 90 (819)
Q Consensus 26 p~~~~~Latgs~Dg----~V~IWdl~~~~~i~~l~------~h~~~V~~l~fspdg~~Lasgs~DG-----~I~IWDl~s 90 (819)
|+++.++++....+ .+.+.+...+.....+. +|...+..++|+|||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 65666555554433 33444444444332222 3444688999999999998776543 899999999
Q ss_pred CeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCc----------------EEEEECCCCeE--EEEEe--cCCCCeEEEE
Q 003445 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTN----------------LKIWDIRKKGC--IHTYK--GHTRGVNAIR 150 (819)
Q Consensus 91 ~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~----------------I~IwDi~t~~~--i~~~~--~h~~~I~sl~ 150 (819)
++.+.....+ ..+..++|+|||+.|+.++.++. |++|++.++.. ...+. .|...+..+.
T Consensus 161 g~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~ 239 (710)
T 2xdw_A 161 AKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239 (710)
T ss_dssp TEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred CCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence 9877643322 23667999999999999988766 99999988752 22233 3456688999
Q ss_pred EcCCCCEEEEEEC-----CCeEEEEECCC------Ce-EEEEEecCCCCeEEEEEeCCCCEEEEEECC----CeEEEEEC
Q 003445 151 FTPDGRWVVSGGE-----DNTVKLWDLTA------GK-LLHDFKCHEGQIQCIDFHPHEFLLATGSAD----RTVKFWDL 214 (819)
Q Consensus 151 fspdg~~L~sgs~-----Dg~I~IwDl~t------~~-~i~~~~~h~~~I~sl~fspdg~~Lasgs~D----g~I~iwDl 214 (819)
|+|||++|+.++. +..|++||+.+ +. ....+..+...+.. .|+|+|..|+..+.. +.|.+||+
T Consensus 240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~ 318 (710)
T 2xdw_A 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDF 318 (710)
T ss_dssp ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEET
T ss_pred EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeC
Confidence 9999999988765 56899999986 43 34555556555555 488998888776653 36999999
Q ss_pred CCCeE--EEEeCCCC--CCeeEEEEeCCCCEEEEEECCC---EEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEE
Q 003445 215 ETFEL--IGSAGPET--SGVRCLTFNPDGRTLLCGLHES---LKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSY 286 (819)
Q Consensus 215 ~~~~~--l~~~~~~~--~~I~sl~fspdg~~Lasgs~d~---I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~ 286 (819)
.++.. ...+..+. ..+..+.|++++.++++...++ |.+|++..++....+..+...+..+.+ +++..++.++
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ 398 (710)
T 2xdw_A 319 TDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQF 398 (710)
T ss_dssp TSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEE
T ss_pred CCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEE
Confidence 87641 22333332 3578899997777777776664 555555456555555544444444544 4676665443
Q ss_pred c----CCeEEEEEecCCc
Q 003445 287 N----QSCVGVWVVDISR 300 (819)
Q Consensus 287 ~----Dg~V~IW~ld~~~ 300 (819)
. .+.|++|++.+++
T Consensus 399 ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 399 TSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ECSSCCCEEEEEETTSSS
T ss_pred eCCCCCCEEEEEECCCCc
Confidence 3 4789999998877
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.62 E-value=2.5e-13 Score=144.41 Aligned_cols=246 Identities=13% Similarity=0.039 Sum_probs=178.9
Q ss_pred CceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 003445 49 PNAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKI 127 (819)
Q Consensus 49 ~~~i~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~I 127 (819)
+..+..+..+.....+++|+|+++ +++++..++.|..||..++ ...+..+...+.+++|+++|+++++...++.|.+
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 344455556667789999999998 7788888999999999887 5667667788999999999998877777789999
Q ss_pred EECCCCeEEEEEecC----CCCeEEEEEcCCCCEEEEE----E-------------CCCeEEEEECCCCeEEEEEecCCC
Q 003445 128 WDIRKKGCIHTYKGH----TRGVNAIRFTPDGRWVVSG----G-------------EDNTVKLWDLTAGKLLHDFKCHEG 186 (819)
Q Consensus 128 wDi~t~~~i~~~~~h----~~~I~sl~fspdg~~L~sg----s-------------~Dg~I~IwDl~t~~~i~~~~~h~~ 186 (819)
||..+++........ ...+..++++|+|+++++. + ..+.|..||.. ++. ..+..+..
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~ 172 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRV 172 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCS
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCC
Confidence 999887755433221 2346789999999988873 2 13567777765 443 34444566
Q ss_pred CeEEEEEeCCCCEEEEEECCCeEEEEECC-CCeE---EEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceee
Q 003445 187 QIQCIDFHPHEFLLATGSADRTVKFWDLE-TFEL---IGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHD 262 (819)
Q Consensus 187 ~I~sl~fspdg~~Lasgs~Dg~I~iwDl~-~~~~---l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~ 262 (819)
....++|+|++++|++.+.++.|++||+. +++. ...+..+...+.+++++++|+++++. .++|.+|+.+ ++...
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~ 250 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELG 250 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEE
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEE
Confidence 78999999999988777778999999997 5554 23333345567889999999977766 7789999876 55666
Q ss_pred eeeccccceeEeEe--cCCCEEEEEEcCCeEEEEEecCCcee
Q 003445 263 AVDVGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVVDISRIE 302 (819)
Q Consensus 263 ~~~~~~s~i~~l~~--~dg~lLa~~~~Dg~V~IW~ld~~~~~ 302 (819)
.+..... +..+.+ ++++.|.++..+ .+.-++..+.+++
T Consensus 251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 251 RVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp EEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred EEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 6655554 555544 577888888776 4444455555544
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.61 E-value=7.6e-14 Score=151.17 Aligned_cols=222 Identities=10% Similarity=0.088 Sum_probs=156.2
Q ss_pred CCEEEEEEeeCCCcEEEEEeCC---C--eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC-----------
Q 003445 17 STVNCLKIGRKSSRVLVTGGED---H--KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS----------- 80 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~D---g--~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D----------- 80 (819)
..+.+++|+|++. .|+.++.+ + .|.+|++.+++....... .. +..+.|+||++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~-~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 59 ENATMPRISPDGK-KIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp ESCEEEEECTTSS-EEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred ccCCCeEECCCCC-EEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence 4578899999554 45554432 3 477888887776555443 34 9999999999988887642
Q ss_pred ----------------CeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCC-------cEEEEECCCCeEEE
Q 003445 81 ----------------GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT-------NLKIWDIRKKGCIH 137 (819)
Q Consensus 81 ----------------G~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg-------~I~IwDi~t~~~i~ 137 (819)
..|.+||+.+++.+..+.. . .+..+.|+|+| +++++..++ ...||.+.+++. .
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~ 211 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-E 211 (347)
T ss_dssp -CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-E
T ss_pred ccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-E
Confidence 5799999999887455554 3 78899999999 777776542 334443335544 3
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEECC--------CeEEEEECCCCeEEEEEecCCCCeEE-EEEeCCCCEEEEEECCCe
Q 003445 138 TYKGHTRGVNAIRFTPDGRWVVSGGED--------NTVKLWDLTAGKLLHDFKCHEGQIQC-IDFHPHEFLLATGSADRT 208 (819)
Q Consensus 138 ~~~~h~~~I~sl~fspdg~~L~sgs~D--------g~I~IwDl~t~~~i~~~~~h~~~I~s-l~fspdg~~Lasgs~Dg~ 208 (819)
.+..+ ..+..+ +|||++|+.++.+ ..|.+|| +++.......+...+.. +.|+ ++ ++++++.++.
T Consensus 212 ~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~ 284 (347)
T 2gop_A 212 KMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGS 284 (347)
T ss_dssp EEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTE
T ss_pred EeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCc
Confidence 34334 455544 9999998887754 4688888 56654444455677886 8999 88 9999999999
Q ss_pred EEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-C-EEEEEec
Q 003445 209 VKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-S-LKVFSWE 256 (819)
Q Consensus 209 I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~-I~Vwd~~ 256 (819)
+++| +.+++...... +...|.+++|+| .++++++.+ . ..+|.++
T Consensus 285 ~~l~-~~~g~~~~~~~-~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 285 VNLY-IWDGEIKPIAK-GRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEE-EESSSEEEEEC-SSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EEEE-EcCCceEEEec-CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9999 87666544443 467789999999 566665544 3 3888887
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.61 E-value=1.2e-13 Score=147.00 Aligned_cols=214 Identities=13% Similarity=0.109 Sum_probs=178.4
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEecCCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCC-CCeEE
Q 003445 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHT-SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHR-SNCIS 106 (819)
Q Consensus 29 ~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~-~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~-~~I~s 106 (819)
+++|++++.|+.|.+||..+++.+..+..+. ..+.++.+.|+|++++ +.++.|..||. +++.+..+..+. ..+.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 5789999999999999999999999998776 5789999999999888 45788999999 899998888653 57889
Q ss_pred EEEecCCCEEEEEEC-CCcEEEEECCCCeEEEEEec------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003445 107 VDFHPFGEFFASGSL-DTNLKIWDIRKKGCIHTYKG------HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLH 179 (819)
Q Consensus 107 l~fsp~g~~Lasgs~-Dg~I~IwDi~t~~~i~~~~~------h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~ 179 (819)
+.+.++|+++++.+. ++.|..+|. +++.+..+.. +......+++.++|+++++...++.|.+||.. |+.+.
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w 159 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLN 159 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEE
Confidence 999999999999887 788888886 6777777652 11235566789999999999999999999998 99999
Q ss_pred EEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCC------CCeeEEEEeCCCCEEEEEECC
Q 003445 180 DFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET------SGVRCLTFNPDGRTLLCGLHE 248 (819)
Q Consensus 180 ~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~------~~I~sl~fspdg~~Lasgs~d 248 (819)
.+... ....++.+.++|.+++++..++.|..||..+|+.+..+.... ..+..+...++|.++++...+
T Consensus 160 ~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 160 SVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp EEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred EEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccC
Confidence 98864 455677888999999999988899999999999988875321 236888889999998887543
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.61 E-value=7.1e-14 Score=145.76 Aligned_cols=241 Identities=7% Similarity=-0.048 Sum_probs=170.7
Q ss_pred CEEEEEEeeCCCcEEE-EEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003445 18 TVNCLKIGRKSSRVLV-TGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96 (819)
Q Consensus 18 ~V~~lafsp~~~~~La-tgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~ 96 (819)
...++++++ ++++++ +...++.|.+|+..+.........+...+.+++++++++++++.. ++.|.+||.........
T Consensus 25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECT-TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECC-CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 788999998 556666 446788999999765543322233445788999999999666655 88999999876654322
Q ss_pred EcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003445 97 LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK 176 (819)
Q Consensus 97 l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~ 176 (819)
.......+..+++.++|+++++...++.|.+|+..+.............+.+++++++|+++++...++.|.+||...+.
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~ 182 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN 182 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence 22233578999999999977777778899999876554433222333467889999999977777678899999998766
Q ss_pred EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEe
Q 003445 177 LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (819)
Q Consensus 177 ~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (819)
.......+...+.+++++++|.++++...++.|.+||............+...+.+++++++|+++++...+ .|.+|++
T Consensus 183 ~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 183 QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence 544333333678999999999877777778899999997655433222233568999999999866665443 5888887
Q ss_pred cCCce
Q 003445 256 EPIRC 260 (819)
Q Consensus 256 ~~~~~ 260 (819)
...+.
T Consensus 263 ~~~~~ 267 (270)
T 1rwi_B 263 LEHHH 267 (270)
T ss_dssp CGGGS
T ss_pred CCccc
Confidence 65443
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.59 E-value=6.5e-13 Score=144.49 Aligned_cols=245 Identities=9% Similarity=-0.001 Sum_probs=181.1
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~ 96 (819)
.....+.+. +++++++...++.|.+||..+++.+..+. .......++++++++++++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 346777774 56777777778999999999999988886 346789999988885544444899999999999998877
Q ss_pred EcCCC-----CCeEEEEEecCCCEEEEEE--CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC-----
Q 003445 97 LTGHR-----SNCISVDFHPFGEFFASGS--LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED----- 164 (819)
Q Consensus 97 l~~h~-----~~I~sl~fsp~g~~Lasgs--~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~D----- 164 (819)
+.... .....+++ ++..++++. .++.|.+||+.+++.+..+... .....++++|+|++++++..+
T Consensus 121 i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~ 197 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSP 197 (328)
T ss_dssp EECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCS
T ss_pred EEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCc
Confidence 76433 13456677 345555554 4889999999999988887643 345788999999877766554
Q ss_pred -----CeEEEEECCCCeEEEEEecC-CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEE--eCCCCCCeeEEEEe
Q 003445 165 -----NTVKLWDLTAGKLLHDFKCH-EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS--AGPETSGVRCLTFN 236 (819)
Q Consensus 165 -----g~I~IwDl~t~~~i~~~~~h-~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~--~~~~~~~I~sl~fs 236 (819)
+.|.+||..+++....+... ......++|+|++++|+++.. .|.+||..+++.... +.........++++
T Consensus 198 ~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vd 275 (328)
T 3dsm_A 198 YGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVN 275 (328)
T ss_dssp SCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEEC
T ss_pred cccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEc
Confidence 78999999999888777643 236899999999999888754 899999998875421 11124568999999
Q ss_pred CCCCEEEEEE------CCCEEEEEecCCceeeeeeccccc
Q 003445 237 PDGRTLLCGL------HESLKVFSWEPIRCHDAVDVGWSR 270 (819)
Q Consensus 237 pdg~~Lasgs------~d~I~Vwd~~~~~~~~~~~~~~s~ 270 (819)
|++..|+++. .+.|.+|+.+ ++....+..+..+
T Consensus 276 p~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P 314 (328)
T 3dsm_A 276 PNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIP 314 (328)
T ss_dssp TTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESE
T ss_pred CCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCc
Confidence 9544455443 2358888877 6666666555444
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.56 E-value=4.4e-13 Score=160.77 Aligned_cols=276 Identities=11% Similarity=0.028 Sum_probs=178.5
Q ss_pred eeCCCcEEEEEeCCC--e--EEEEECCCCceEEEec------CCCCCeEEEEEcCCCCEEEEE-----ECCCeEEEEECC
Q 003445 25 GRKSSRVLVTGGEDH--K--VNLWAIGKPNAILSLS------GHTSGIDSVSFDSSEVLVAAG-----AASGTIKLWDLE 89 (819)
Q Consensus 25 sp~~~~~Latgs~Dg--~--V~IWdl~~~~~i~~l~------~h~~~V~~l~fspdg~~Lasg-----s~DG~I~IWDl~ 89 (819)
+|+++.++++....+ . |.+.+...+.....+. +|...+..++|+|||++|+.+ +.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 365665555554433 3 4444544444433332 455578999999999998843 334689999999
Q ss_pred CCeEEEEEcCCCCCe--EEEEEecCCCEEEEEECCCc-------------EEEEECCCCe----EEEEEecCCCCeEEEE
Q 003445 90 EAKIVRTLTGHRSNC--ISVDFHPFGEFFASGSLDTN-------------LKIWDIRKKG----CIHTYKGHTRGVNAIR 150 (819)
Q Consensus 90 s~~~i~~l~~h~~~I--~sl~fsp~g~~Lasgs~Dg~-------------I~IwDi~t~~----~i~~~~~h~~~I~sl~ 150 (819)
+++.+. ..+...+ ..++|+|+|+.|+.++.|.. |++|++.++. .+.....|...+..+.
T Consensus 156 tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~ 233 (695)
T 2bkl_A 156 SGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD 233 (695)
T ss_dssp TCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE
T ss_pred CCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE
Confidence 988641 1121222 67899999999999998776 9999998775 3333344556789999
Q ss_pred EcCCCCEEEEEECCC----eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE---CCCeEEEEECCCCeE---E
Q 003445 151 FTPDGRWVVSGGEDN----TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS---ADRTVKFWDLETFEL---I 220 (819)
Q Consensus 151 fspdg~~L~sgs~Dg----~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs---~Dg~I~iwDl~~~~~---l 220 (819)
|+|||++|+.++.++ .|++||..+++.. .+..+...+....| ++|.+++.+. .++.|.+||+.+++. .
T Consensus 234 ~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~ 311 (695)
T 2bkl_A 234 LSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWK 311 (695)
T ss_dssp ECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCE
T ss_pred ECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCe
Confidence 999999998887666 7888877665543 34445555666666 5666444443 257899999987652 3
Q ss_pred EEeCCC-CCCeeEEEEeCCCCEEEEEECC-CEEEEEecC-Cceeeeeecc-ccceeEeEe-cCCCEEEEEEc----CCeE
Q 003445 221 GSAGPE-TSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP-IRCHDAVDVG-WSRLSDLNV-HEGKLLGCSYN----QSCV 291 (819)
Q Consensus 221 ~~~~~~-~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~-~~~~~~~~~~-~s~i~~l~~-~dg~lLa~~~~----Dg~V 291 (819)
..+..+ ...+..++|+ ++.++++...+ ..++|.++. ++....+... ...+..+.+ ++++.++..+. .+.|
T Consensus 312 ~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v 390 (695)
T 2bkl_A 312 EIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQI 390 (695)
T ss_dssp EEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEE
T ss_pred EEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEE
Confidence 333333 4457888998 66677776655 467776652 3333333332 223333333 56766664443 3789
Q ss_pred EEEEecCCceeeee
Q 003445 292 GVWVVDISRIEPYT 305 (819)
Q Consensus 292 ~IW~ld~~~~~p~~ 305 (819)
++|++++++...+.
T Consensus 391 ~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 391 YKTSVSTGKSELWA 404 (695)
T ss_dssp EEEETTTCCEEEEE
T ss_pred EEEECCCCcEEEEe
Confidence 99999988765443
No 192
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.55 E-value=1.8e-12 Score=137.99 Aligned_cols=243 Identities=11% Similarity=0.127 Sum_probs=174.6
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEE-------EeCCCeEEEEECCCCceEEEec----CCCCCeEEEEEcCC-CCEEEEE
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVT-------GGEDHKVNLWAIGKPNAILSLS----GHTSGIDSVSFDSS-EVLVAAG 77 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Lat-------gs~Dg~V~IWdl~~~~~i~~l~----~h~~~V~~l~fspd-g~~Lasg 77 (819)
..+...-....+++|++ ++.++++ +..++.|.+||..+++...... ++...+.+++++++ ++++++
T Consensus 11 ~~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~- 88 (314)
T 1pjx_A 11 TKVTEDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA- 88 (314)
T ss_dssp EEEECCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-
T ss_pred hhhhccCCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-
Confidence 34455566789999997 5677777 5678899999987776543322 25567999999999 665554
Q ss_pred ECCCeEEEEECCCCeEEEE-EcC----CCCCeEEEEEecCCCEEEEEECC---------------CcEEEEECCCCeEEE
Q 003445 78 AASGTIKLWDLEEAKIVRT-LTG----HRSNCISVDFHPFGEFFASGSLD---------------TNLKIWDIRKKGCIH 137 (819)
Q Consensus 78 s~DG~I~IWDl~s~~~i~~-l~~----h~~~I~sl~fsp~g~~Lasgs~D---------------g~I~IwDi~t~~~i~ 137 (819)
+..+.|.+||.. ++.... ... ....+.++++.++|+++++...+ +.|..||.. ++...
T Consensus 89 ~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~ 166 (314)
T 1pjx_A 89 DMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ 166 (314)
T ss_dssp ETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred ECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE
Confidence 445579999998 765433 221 12357899999999887776554 568888876 55433
Q ss_pred EEecCCCCeEEEEEc----CCCCEEEEE-ECCCeEEEEECC-CCeE-----EEEEecCC-CCeEEEEEeCCCCEEEEEEC
Q 003445 138 TYKGHTRGVNAIRFT----PDGRWVVSG-GEDNTVKLWDLT-AGKL-----LHDFKCHE-GQIQCIDFHPHEFLLATGSA 205 (819)
Q Consensus 138 ~~~~h~~~I~sl~fs----pdg~~L~sg-s~Dg~I~IwDl~-t~~~-----i~~~~~h~-~~I~sl~fspdg~~Lasgs~ 205 (819)
.. .+......++|+ ++|+.|+.+ ..++.|.+||.. +++. ...+..+. ..+..++++++|.++++...
T Consensus 167 ~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 167 VD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp EE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred ec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence 32 233456889999 999766655 467899999986 4542 22233333 56789999999998888888
Q ss_pred CCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecC
Q 003445 206 DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEP 257 (819)
Q Consensus 206 Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~ 257 (819)
++.|.+||..+++.+..+..+...+.+++|+++|+.|+++..+ +|..|+.+.
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8999999998777666666666789999999999977776655 677777754
No 193
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.54 E-value=2.7e-13 Score=162.64 Aligned_cols=241 Identities=8% Similarity=-0.033 Sum_probs=167.5
Q ss_pred ccCCCEEEEEEeeCCCcEEEEE----eCCCeEEEEECCCCceEEEecCCCCCe--EEEEEcCCCCEEEEEECCCe-----
Q 003445 14 AHSSTVNCLKIGRKSSRVLVTG----GEDHKVNLWAIGKPNAILSLSGHTSGI--DSVSFDSSEVLVAAGAASGT----- 82 (819)
Q Consensus 14 ~H~~~V~~lafsp~~~~~Latg----s~Dg~V~IWdl~~~~~i~~l~~h~~~V--~~l~fspdg~~Lasgs~DG~----- 82 (819)
+|...+.+++|+|++..++++. +++..|++||+.+++.+. ..+-..+ ..++|+||++.|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 3555789999999554444343 334689999999887641 1122222 68999999999999988776
Q ss_pred --------EEEEECCCCe----EEEEEcCCCCCeEEEEEecCCCEEEEEECCC----cEEEEECCCCeEEEEEecCCCCe
Q 003445 83 --------IKLWDLEEAK----IVRTLTGHRSNCISVDFHPFGEFFASGSLDT----NLKIWDIRKKGCIHTYKGHTRGV 146 (819)
Q Consensus 83 --------I~IWDl~s~~----~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg----~I~IwDi~t~~~i~~~~~h~~~I 146 (819)
|++|++.++. .+.....|...+..+.|+|+|++|+.++.++ .|++||..++... .+..+...+
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~ 274 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAK 274 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCC
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCce
Confidence 9999998775 3433444556789999999999988877666 7888876655533 444455566
Q ss_pred EEEEEcCCCCEEEEEEC----CCeEEEEECCCCeE---EEEEecC-CCCeEEEEEeCCCCEEEEEECCCeEEEEECC-CC
Q 003445 147 NAIRFTPDGRWVVSGGE----DNTVKLWDLTAGKL---LHDFKCH-EGQIQCIDFHPHEFLLATGSADRTVKFWDLE-TF 217 (819)
Q Consensus 147 ~sl~fspdg~~L~sgs~----Dg~I~IwDl~t~~~---i~~~~~h-~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~-~~ 217 (819)
....| ++|. |+..+. ++.|.+||+.++.. ...+..+ ...+..++|+ ++.++++...|+..++|.+. .+
T Consensus 275 ~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g 351 (695)
T 2bkl_A 275 YEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG 351 (695)
T ss_dssp EEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred EEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC
Confidence 66667 5666 554443 57899999987753 3333323 4457888888 77888999999988877654 35
Q ss_pred eEEEEeCCC-CCCeeEEEEeCCCCEEEEEEC-----CCEEEEEecCCce
Q 003445 218 ELIGSAGPE-TSGVRCLTFNPDGRTLLCGLH-----ESLKVFSWEPIRC 260 (819)
Q Consensus 218 ~~l~~~~~~-~~~I~sl~fspdg~~Lasgs~-----d~I~Vwd~~~~~~ 260 (819)
+.+..+..+ .+.+..++++|++..++.... ..+.+||+.+++.
T Consensus 352 ~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 352 KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 555555544 566788889999987774422 2477788776553
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.54 E-value=6.8e-13 Score=138.30 Aligned_cols=240 Identities=7% Similarity=-0.057 Sum_probs=167.4
Q ss_pred CeEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 003445 61 GIDSVSFDSSEVLVA-AGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY 139 (819)
Q Consensus 61 ~V~~l~fspdg~~La-sgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~ 139 (819)
...++++++++++++ +...++.|.+||..+.........+...+.++++.++++++++.. ++.|.+||..........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 678999999999777 446789999999766543322223345678899999998666555 889999998765433222
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeE
Q 003445 140 KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL 219 (819)
Q Consensus 140 ~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~ 219 (819)
......+..++++++|+.+++...++.|.+||..+.............+.+++++++|+++++...++.|.+||......
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 22335689999999999777777789999998765544332222334678899999999777777788999999987765
Q ss_pred EEEeCCCCCCeeEEEEeCCCCEEEEEEC-CCEEEEEecCCceeeeeeccccceeEeEe-cCCCEEEEEEcCCeEEEEEec
Q 003445 220 IGSAGPETSGVRCLTFNPDGRTLLCGLH-ESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 220 l~~~~~~~~~I~sl~fspdg~~Lasgs~-d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld 297 (819)
..........+.+++++++|.++++... +.|.+|+.+..........+......+.+ ++|.++++...++.|++|+++
T Consensus 184 ~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 184 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 5443333366899999999966665543 46888887665433322223334455555 678888888899999999887
Q ss_pred CCce
Q 003445 298 ISRI 301 (819)
Q Consensus 298 ~~~~ 301 (819)
..+.
T Consensus 264 ~~~~ 267 (270)
T 1rwi_B 264 EHHH 267 (270)
T ss_dssp GGGS
T ss_pred Cccc
Confidence 6543
No 195
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.54 E-value=4.2e-11 Score=125.96 Aligned_cols=274 Identities=8% Similarity=-0.006 Sum_probs=186.9
Q ss_pred ccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEE-EecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003445 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL-SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK 92 (819)
Q Consensus 14 ~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~-~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~ 92 (819)
.....+.++++.+ +++++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|..||.. ++
T Consensus 17 ~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 17 IPDSGPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp STTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCCcceeeECC-CCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 3456899999998 56667766678999999987 54433 233344679999999999988776668899999988 65
Q ss_pred EEEE-EcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEE-EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 93 IVRT-LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH-TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLW 170 (819)
Q Consensus 93 ~i~~-l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~-~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~Iw 170 (819)
.... +......+.++++.+++.++++...++.|..||.. ++... .+......+..+++.++|+.+++...++.|..|
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 172 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI 172 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence 5322 22244678999999999888777668899999987 55442 223344678999999999966666567899999
Q ss_pred ECCCCeEEEE-EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEE-eCCCCCCeeEEEEeCCCCEEEEEEC-
Q 003445 171 DLTAGKLLHD-FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS-AGPETSGVRCLTFNPDGRTLLCGLH- 247 (819)
Q Consensus 171 Dl~t~~~i~~-~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~-~~~~~~~I~sl~fspdg~~Lasgs~- 247 (819)
|. +++.... ...+...+..++++++|.++++....+.|.+||. +++.... .......+.+++++++|+++++...
T Consensus 173 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 250 (300)
T 2qc5_A 173 TN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGA 250 (300)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTT
T ss_pred CC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCC
Confidence 98 5554432 1223456899999999987777767788999998 5554433 3334566899999999986655533
Q ss_pred CCEEEEEecCCceeee-eeccccceeEeEe-cCCCEEEEEEcCCeEEEEEe
Q 003445 248 ESLKVFSWEPIRCHDA-VDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 296 (819)
Q Consensus 248 d~I~Vwd~~~~~~~~~-~~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~l 296 (819)
+.|..|+.+ .+.... +.........+.. .+|.++++.. . .|..++.
T Consensus 251 ~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 251 NQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 467777763 322211 1212233344444 4666655544 3 5555443
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.52 E-value=2.4e-11 Score=127.68 Aligned_cols=237 Identities=10% Similarity=-0.014 Sum_probs=172.7
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce-EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA-ILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI 93 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~-i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~ 93 (819)
+...+.++++.+ ++.++++...++.|..|+.. ++. ...+......+.++++.+++.++++...++.|.+||. +++.
T Consensus 55 ~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~ 131 (299)
T 2z2n_A 55 PDAKVMCLTISS-DGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI 131 (299)
T ss_dssp TTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred ccCceeeEEECC-CCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE
Confidence 456799999998 56667766668899999976 332 2222234567999999999988888777889999998 5554
Q ss_pred EEE-EcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 94 VRT-LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT-YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (819)
Q Consensus 94 i~~-l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~-~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwD 171 (819)
... ...+...+..+++.+++..+++...++.|..||. +++.... ...+...+..+++.++|+++++...++.|.+||
T Consensus 132 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 210 (299)
T 2z2n_A 132 REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRIT 210 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEEC
Confidence 433 2334567899999999988777767789999998 6655432 233445688999999999777666688999999
Q ss_pred CCCCeEEEE-EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEE-eCCCCCCeeEEEEeCCCCEEEEEECCC
Q 003445 172 LTAGKLLHD-FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS-AGPETSGVRCLTFNPDGRTLLCGLHES 249 (819)
Q Consensus 172 l~t~~~i~~-~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~-~~~~~~~I~sl~fspdg~~Lasgs~d~ 249 (819)
. +++.... ...+...+.+++++++|.++++...++.|..||. +++.... ...+...+.++++ ++|.++++...++
T Consensus 211 ~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~ 287 (299)
T 2z2n_A 211 T-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDK 287 (299)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTE
T ss_pred C-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCc
Confidence 9 6664332 2224467899999999987776657889999998 4543322 3344567899999 8998877766677
Q ss_pred EEEEEecCC
Q 003445 250 LKVFSWEPI 258 (819)
Q Consensus 250 I~Vwd~~~~ 258 (819)
+..|+.++.
T Consensus 288 l~~~~~~~~ 296 (299)
T 2z2n_A 288 IGKLTLIKD 296 (299)
T ss_dssp EEEEEEC--
T ss_pred EEEEEcCcc
Confidence 888877654
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.51 E-value=4.9e-11 Score=132.46 Aligned_cols=272 Identities=6% Similarity=-0.068 Sum_probs=190.8
Q ss_pred EeeCCCcEEEEEeC--CC---eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCeEEEEEC
Q 003445 24 IGRKSSRVLVTGGE--DH---KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA----------ASGTIKLWDL 88 (819)
Q Consensus 24 fsp~~~~~Latgs~--Dg---~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs----------~DG~I~IWDl 88 (819)
..| +++++++... .. .|.+||..+++.+..+.....+ .++|+||+++++++. .++.|.+||.
T Consensus 28 ~~~-~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 28 PGA-DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred CCC-CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 335 4455555543 33 8899999999988887754444 999999999998875 3678999999
Q ss_pred CCCeEEEEEcCC-------CCCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCeEEEE-EecCCCCeEEEEEcCCC-CE
Q 003445 89 EEAKIVRTLTGH-------RSNCISVDFHPFGEFFASGSL--DTNLKIWDIRKKGCIHT-YKGHTRGVNAIRFTPDG-RW 157 (819)
Q Consensus 89 ~s~~~i~~l~~h-------~~~I~sl~fsp~g~~Lasgs~--Dg~I~IwDi~t~~~i~~-~~~h~~~I~sl~fspdg-~~ 157 (819)
.+.+.+..+... ...-..+.|+|+|++|+++.. ++.|.++| .+++.+.. +.. .. ++.+.|++ +.
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~~ 179 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPST 179 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCce
Confidence 998888776432 123457899999999998874 47899999 99988877 553 22 24455654 45
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEe-----cCCCCe-EEEEEeCCCCEEEEEECCCeEEEEECCCCe--EEEEeCC----
Q 003445 158 VVSGGEDNTVKLWDLTAGKLLHDFK-----CHEGQI-QCIDFHPHEFLLATGSADRTVKFWDLETFE--LIGSAGP---- 225 (819)
Q Consensus 158 L~sgs~Dg~I~IwDl~t~~~i~~~~-----~h~~~I-~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~--~l~~~~~---- 225 (819)
+++.+.||.+.+||. +++...... ....++ ....+.+++..++..+.++.+.+.|+.... .+..+..
T Consensus 180 ~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~ 258 (373)
T 2mad_H 180 FYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGG 258 (373)
T ss_pred EEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCc
Confidence 566778999999999 887664322 112222 234566766555555578899999997543 2222211
Q ss_pred ------CCCCeeEEEEeCCCCEEEEEEC-----------CCEEEEEecCCceeeeeeccccceeEeEecCCC-EEEEEE-
Q 003445 226 ------ETSGVRCLTFNPDGRTLLCGLH-----------ESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGK-LLGCSY- 286 (819)
Q Consensus 226 ------~~~~I~sl~fspdg~~Lasgs~-----------d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~-lLa~~~- 286 (819)
.......+.++++++.|++... +.|.++|..+.+....+..+.........+||+ +++++.
T Consensus 259 ~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~ 338 (373)
T 2mad_H 259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSA 338 (373)
T ss_pred ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcC
Confidence 1123445889999998887643 358889999988888887766555555558888 666665
Q ss_pred cCCeEEEEEecCCceeee
Q 003445 287 NQSCVGVWVVDISRIEPY 304 (819)
Q Consensus 287 ~Dg~V~IW~ld~~~~~p~ 304 (819)
.++.|.+||+.+.+....
T Consensus 339 ~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 339 GTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CCCeEEEEECCCCCEEee
Confidence 589999999999887754
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.50 E-value=4.2e-12 Score=135.03 Aligned_cols=222 Identities=17% Similarity=0.186 Sum_probs=172.1
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEcCCC-CCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-CCeE
Q 003445 70 SEVLVAAGAASGTIKLWDLEEAKIVRTLTGHR-SNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT-RGVN 147 (819)
Q Consensus 70 dg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~-~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~-~~I~ 147 (819)
.+++|++++.++.|.+||.++++.+..+..+. ..+.++.+.|+|++|+ +.++.|+.||. +++.+..+..+. ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 45789999999999999999999999998766 4788999999999888 45788999998 899999998653 4688
Q ss_pred EEEEcCCCCEEEEEEC-CCeEEEEECCCCeEEEEEecCC------CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEE
Q 003445 148 AIRFTPDGRWVVSGGE-DNTVKLWDLTAGKLLHDFKCHE------GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI 220 (819)
Q Consensus 148 sl~fspdg~~L~sgs~-Dg~I~IwDl~t~~~i~~~~~h~------~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l 220 (819)
++.+.++|+++++.+. ++.|..+|. +|+.+..+.... .....+.+.++|.+|++...++.|..||.+ |+.+
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 9999999999999887 888888886 688887775321 234556788999999999999999999998 9999
Q ss_pred EEeCCCCCCeeEEEEeCCCCEEEEEECCC-EEEEEecCCceeeeeeccc-c--c---eeEe-EecCCCEEEEEEcC----
Q 003445 221 GSAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFSWEPIRCHDAVDVGW-S--R---LSDL-NVHEGKLLGCSYNQ---- 288 (819)
Q Consensus 221 ~~~~~~~~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~~~~~~~~~~~~~-s--~---i~~l-~~~dg~lLa~~~~D---- 288 (819)
..+... ..+.++.+.++|.+++++..+. +..||.++++....+.... . . ...+ ...+|.++++.+..
T Consensus 159 w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~ 237 (276)
T 3no2_A 159 NSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDRE 237 (276)
T ss_dssp EEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTT
T ss_pred EEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCcccc
Confidence 888765 4566788899999999887764 7777777677655553221 1 1 2222 23788888887633
Q ss_pred ----CeEEEEEec
Q 003445 289 ----SCVGVWVVD 297 (819)
Q Consensus 289 ----g~V~IW~ld 297 (819)
+..+++.++
T Consensus 238 ~~~~~~~~~~~~~ 250 (276)
T 3no2_A 238 AGKGKHPQLVEID 250 (276)
T ss_dssp GGGSCCCSEEEEC
T ss_pred ccccCCceEEEEC
Confidence 234566663
No 199
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.49 E-value=2e-11 Score=130.45 Aligned_cols=230 Identities=13% Similarity=0.064 Sum_probs=167.1
Q ss_pred eccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003445 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK 92 (819)
Q Consensus 13 ~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~ 92 (819)
..+..-..+..|+++++.++++...++.|+.||..++... .+. +...+.+++|+++++++++ . ++.|.+||..+++
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence 3445567799999977888888888999999999876653 333 4568999999999996554 4 6789999999887
Q ss_pred EEEEEcCC----CCCeEEEEEecCCCEEEEEEC-----------CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 003445 93 IVRTLTGH----RSNCISVDFHPFGEFFASGSL-----------DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRW 157 (819)
Q Consensus 93 ~i~~l~~h----~~~I~sl~fsp~g~~Lasgs~-----------Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~ 157 (819)
........ ...+..+++.|+|+++++... .+.|+.+|.. ++... +..+....+.++|+|+++.
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTSCE
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCCCE
Confidence 54433221 234788999999996665432 1344444443 33322 3333345689999999997
Q ss_pred EEEE-ECCCeEEEEEC--CCCeE-----EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCC
Q 003445 158 VVSG-GEDNTVKLWDL--TAGKL-----LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSG 229 (819)
Q Consensus 158 L~sg-s~Dg~I~IwDl--~t~~~-----i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~ 229 (819)
|+.+ +.++.|.+||+ .++.. ...+..+.+....++++++|++.++...++.|..||..+++.+..+..+...
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~ 242 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDK 242 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSB
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCC
Confidence 7554 45789999987 45543 2223333456789999999998888888889999999999998888777778
Q ss_pred eeEEEEe-CCCCEEEEEECC
Q 003445 230 VRCLTFN-PDGRTLLCGLHE 248 (819)
Q Consensus 230 I~sl~fs-pdg~~Lasgs~d 248 (819)
+++++|. |+++.|++++..
T Consensus 243 ~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 243 TTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEEEEEESGGGCEEEEEEBC
T ss_pred ceEEEEeCCCCCEEEEEcCC
Confidence 9999998 898888776543
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.46 E-value=8.6e-12 Score=150.72 Aligned_cols=275 Identities=13% Similarity=0.112 Sum_probs=174.5
Q ss_pred eeCCCcEEEEEeCCC--eEEEEE--CC---CCceEEEe------cCCCCCeEEEEEcCCCCEEEEEECC-----CeEEEE
Q 003445 25 GRKSSRVLVTGGEDH--KVNLWA--IG---KPNAILSL------SGHTSGIDSVSFDSSEVLVAAGAAS-----GTIKLW 86 (819)
Q Consensus 25 sp~~~~~Latgs~Dg--~V~IWd--l~---~~~~i~~l------~~h~~~V~~l~fspdg~~Lasgs~D-----G~I~IW 86 (819)
.|+++.++++....+ .-.+|. .. .+.....+ .+|...+..+.|+|||++|+.+..+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 376666555554444 345554 33 33333322 2233468899999999998887654 469999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCc--------------EEEEECCCCeE--EEEEe--cCCCCeEE
Q 003445 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTN--------------LKIWDIRKKGC--IHTYK--GHTRGVNA 148 (819)
Q Consensus 87 Dl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~--------------I~IwDi~t~~~--i~~~~--~h~~~I~s 148 (819)
|+.+++.+.... +...+..++|+|+ +.|+.++.++. |++|++.++.. ...+. .+...+..
T Consensus 195 dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~ 272 (741)
T 1yr2_A 195 GVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG 272 (741)
T ss_dssp ETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred ECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence 999998765421 1122357899999 99888887654 89999977652 22333 33345889
Q ss_pred EEEcCCCCEEEEEECCC-----eEEEEECCCC--eEEEEEecCCCCeEEEEEeCCCCEEEEEECC----CeEEEEECCCC
Q 003445 149 IRFTPDGRWVVSGGEDN-----TVKLWDLTAG--KLLHDFKCHEGQIQCIDFHPHEFLLATGSAD----RTVKFWDLETF 217 (819)
Q Consensus 149 l~fspdg~~L~sgs~Dg-----~I~IwDl~t~--~~i~~~~~h~~~I~sl~fspdg~~Lasgs~D----g~I~iwDl~~~ 217 (819)
+.|+|||++|+..+.++ .|++||+.++ +....+..+...+.... +|+|..|+..+.+ +.|.+||+.++
T Consensus 273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 99999999998877544 8999999877 31444554555555553 4888888887763 45999999874
Q ss_pred --eEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEec-CCceeeeeecc-ccceeEeEe-cCCCEEEEEEc----
Q 003445 218 --ELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWE-PIRCHDAVDVG-WSRLSDLNV-HEGKLLGCSYN---- 287 (819)
Q Consensus 218 --~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~-~~~~~~~~~~~-~s~i~~l~~-~dg~lLa~~~~---- 287 (819)
+....+..+...+..+.|+ ++.++++...+ ..+||.++ .++....+... ...+..+.+ ++++.++..+.
T Consensus 352 ~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~ 430 (741)
T 1yr2_A 352 TPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQ 430 (741)
T ss_dssp SCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTE
T ss_pred ccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCC
Confidence 3444444445556778887 55566666555 45666665 23433434332 333444443 56665553332
Q ss_pred CCeEEEEEecCCceee
Q 003445 288 QSCVGVWVVDISRIEP 303 (819)
Q Consensus 288 Dg~V~IW~ld~~~~~p 303 (819)
.+.|++|++++++...
T Consensus 431 P~~i~~~d~~tg~~~~ 446 (741)
T 1yr2_A 431 PATVLALDPATAKTTP 446 (741)
T ss_dssp EEEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCCcEEE
Confidence 4789999998876543
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.46 E-value=5.3e-12 Score=152.59 Aligned_cols=239 Identities=8% Similarity=0.042 Sum_probs=163.1
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCC----eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCe----------
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDH----KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGT---------- 82 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg----~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~---------- 82 (819)
..+..++|+|++..++++.+.+| .|++||+.+++.+.... +...+..++|+|| +.|+.++.++.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~ 240 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALN 240 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC--------CC
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccccCC
Confidence 46889999995554444444334 59999999988765321 2222357899999 98888877654
Q ss_pred ----EEEEECCCCe----EEEEEcCCCCCeEEEEEecCCCEEEEEECCC-----cEEEEECCCC--eEEEEEecCCCCeE
Q 003445 83 ----IKLWDLEEAK----IVRTLTGHRSNCISVDFHPFGEFFASGSLDT-----NLKIWDIRKK--GCIHTYKGHTRGVN 147 (819)
Q Consensus 83 ----I~IWDl~s~~----~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg-----~I~IwDi~t~--~~i~~~~~h~~~I~ 147 (819)
|++|++.++. .+.....+...+..+.|+|+|++|+..+.++ .|++||+.++ ++...+..+...+.
T Consensus 241 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 320 (741)
T 1yr2_A 241 YNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQW 320 (741)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCE
T ss_pred CCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceE
Confidence 8999997765 2322233334588999999999988877544 8999999877 31445555555555
Q ss_pred EEEEcCCCCEEEEEECC----CeEEEEECCCC--eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECC-CCeEE
Q 003445 148 AIRFTPDGRWVVSGGED----NTVKLWDLTAG--KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE-TFELI 220 (819)
Q Consensus 148 sl~fspdg~~L~sgs~D----g~I~IwDl~t~--~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~-~~~~l 220 (819)
... +|+|+.|+..+.+ +.|.+||+.++ +....+..+...+..+.|. ++.++++...|+..+||.+. +++..
T Consensus 321 ~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~ 398 (741)
T 1yr2_A 321 DFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPA 398 (741)
T ss_dssp EEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEE
T ss_pred EEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCce
Confidence 554 4899988888764 45999999874 3344444444556678887 66788888889887776554 45555
Q ss_pred EEeCC-CCCCeeEEEEeCCCCEEEEE--EC---CCEEEEEecCCc
Q 003445 221 GSAGP-ETSGVRCLTFNPDGRTLLCG--LH---ESLKVFSWEPIR 259 (819)
Q Consensus 221 ~~~~~-~~~~I~sl~fspdg~~Lasg--s~---d~I~Vwd~~~~~ 259 (819)
..+.. ..+.+..+.++|+++.|+.. +. ..+.+||+.+++
T Consensus 399 ~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 399 GAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred eeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 55554 35668889999998866633 22 247777776655
No 202
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.46 E-value=9.9e-11 Score=127.04 Aligned_cols=233 Identities=12% Similarity=0.027 Sum_probs=165.3
Q ss_pred eEEEEecc-CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 8 KLQEFVAH-SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 8 kl~~~~~H-~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
++..+... ..-..+..|+|+++.++++...++.|..||..+++.. .+. +...+.+++|+++++++++. .+ .|.+|
T Consensus 39 ~~~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~ 114 (326)
T 2ghs_A 39 AGRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLR 114 (326)
T ss_dssp CCEEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEE
T ss_pred ceEEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEE
Confidence 34444432 2346789999977888888888899999998876543 333 34679999999999877654 44 59999
Q ss_pred ECCCCeEEEEEcC---C-CCCeEEEEEecCCCEEEEEEC------CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 003445 87 DLEEAKIVRTLTG---H-RSNCISVDFHPFGEFFASGSL------DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR 156 (819)
Q Consensus 87 Dl~s~~~i~~l~~---h-~~~I~sl~fsp~g~~Lasgs~------Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~ 156 (819)
|..+++....... . ...+..++++|+|+++++... .+.|+.+| +++... +..+......++|+|+|+
T Consensus 115 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~ 191 (326)
T 2ghs_A 115 DTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGT 191 (326)
T ss_dssp ETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSC
T ss_pred ECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCC
Confidence 9988876443321 1 235789999999997665432 25566666 454433 322334578999999998
Q ss_pred EEEEEE-CCCeEEEEECC--CC-e-----EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCC
Q 003445 157 WVVSGG-EDNTVKLWDLT--AG-K-----LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET 227 (819)
Q Consensus 157 ~L~sgs-~Dg~I~IwDl~--t~-~-----~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~ 227 (819)
.|+.+. .++.|.+||+. ++ . ....+.........++++++|.+.++...++.|..||. +++.+..+..+.
T Consensus 192 ~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~ 270 (326)
T 2ghs_A 192 TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG 270 (326)
T ss_dssp EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC
T ss_pred EEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCC
Confidence 776554 56899999986 55 3 22233323456788999999988887777789999998 577777776666
Q ss_pred CCeeEEEEe-CCCCEEEEEECC
Q 003445 228 SGVRCLTFN-PDGRTLLCGLHE 248 (819)
Q Consensus 228 ~~I~sl~fs-pdg~~Lasgs~d 248 (819)
..+.+++|+ +++..|++++..
T Consensus 271 ~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 271 KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp SBEEEEEEESTTSCEEEEEEBC
T ss_pred CCcEEEEEecCCCCEEEEEecC
Confidence 679999998 888887766543
No 203
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.46 E-value=6.9e-11 Score=138.37 Aligned_cols=248 Identities=17% Similarity=0.190 Sum_probs=181.0
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC--CCceEEEecCCCCCeEEEEEc----CCCCEEEEEEC-CCeEEEEEC
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG--KPNAILSLSGHTSGIDSVSFD----SSEVLVAAGAA-SGTIKLWDL 88 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~--~~~~i~~l~~h~~~V~~l~fs----pdg~~Lasgs~-DG~I~IWDl 88 (819)
...+.++.|+| +++++++++.|+.|.+||+. +++.+..+... .....++|+ |||+++++++. +++|.+||.
T Consensus 196 g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~ 273 (567)
T 1qks_A 196 GYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG 273 (567)
T ss_dssp SSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEET
T ss_pred CCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEEC
Confidence 34678999999 66778888899999999995 78888887753 346899999 69998877665 599999999
Q ss_pred CCCeEEEEEcCC----------CC---------------------------------------------CeEEEEEecCC
Q 003445 89 EEAKIVRTLTGH----------RS---------------------------------------------NCISVDFHPFG 113 (819)
Q Consensus 89 ~s~~~i~~l~~h----------~~---------------------------------------------~I~sl~fsp~g 113 (819)
.+.+.+..+... .. ....+.|+|++
T Consensus 274 ~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdg 353 (567)
T 1qks_A 274 ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSH 353 (567)
T ss_dssp TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTS
T ss_pred CCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCC
Confidence 888877665311 00 12256799999
Q ss_pred CEEEEEE-CCCcEEEEECCCCeEEEEEec-----CCCCeEEEEEcCCCCEEEE-EE-CCCeEEEEECCC-------CeEE
Q 003445 114 EFFASGS-LDTNLKIWDIRKKGCIHTYKG-----HTRGVNAIRFTPDGRWVVS-GG-EDNTVKLWDLTA-------GKLL 178 (819)
Q Consensus 114 ~~Lasgs-~Dg~I~IwDi~t~~~i~~~~~-----h~~~I~sl~fspdg~~L~s-gs-~Dg~I~IwDl~t-------~~~i 178 (819)
++|+++. .++.|.+||+.+++.+..+.. |.+.-..+ ++|++..+++ +. .++.|.++|..+ .+.+
T Consensus 354 r~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv 432 (567)
T 1qks_A 354 RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKIL 432 (567)
T ss_dssp CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEE
Confidence 9887765 578899999999988777654 33212122 6887555544 43 468999999987 6788
Q ss_pred EEEecCCCCeEEEEEeCCCCEEEEEEC-------CCeEEEEECCCC-----e-EEEEeC--------CCCCCeeEEEEeC
Q 003445 179 HDFKCHEGQIQCIDFHPHEFLLATGSA-------DRTVKFWDLETF-----E-LIGSAG--------PETSGVRCLTFNP 237 (819)
Q Consensus 179 ~~~~~h~~~I~sl~fspdg~~Lasgs~-------Dg~I~iwDl~~~-----~-~l~~~~--------~~~~~I~sl~fsp 237 (819)
..+......-..+..+|++++|++... .+.|.+||+.+. . .+..+. .....+..+.|++
T Consensus 433 ~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (567)
T 1qks_A 433 DSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK 512 (567)
T ss_dssp EEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT
T ss_pred EEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECC
Confidence 888765444345778999999998763 358999999876 2 112221 1234689999999
Q ss_pred CCCEEEEEE------CCCEEEEEecCCceeeeeec
Q 003445 238 DGRTLLCGL------HESLKVFSWEPIRCHDAVDV 266 (819)
Q Consensus 238 dg~~Lasgs------~d~I~Vwd~~~~~~~~~~~~ 266 (819)
+|+++.++. ++.|.|+|-++.+....+..
T Consensus 513 ~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 513 DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred CCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 999988763 24699999999887766653
No 204
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.44 E-value=2.5e-11 Score=130.17 Aligned_cols=239 Identities=13% Similarity=0.084 Sum_probs=170.2
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
.++..+..+........|+|++..+++++..++.|..|+. ++. ...+..+...+..++|+++|+++++...++.|.+|
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRS 112 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEE
Confidence 3456677777888999999966668888888999999997 444 34455566789999999999977665556889999
Q ss_pred ECCCCeEEEEEcCC----CCCeEEEEEecCCCEEEE----EEC-------------CCcEEEEECCCCeEEEEEecCCCC
Q 003445 87 DLEEAKIVRTLTGH----RSNCISVDFHPFGEFFAS----GSL-------------DTNLKIWDIRKKGCIHTYKGHTRG 145 (819)
Q Consensus 87 Dl~s~~~i~~l~~h----~~~I~sl~fsp~g~~Las----gs~-------------Dg~I~IwDi~t~~~i~~~~~h~~~ 145 (819)
+.. ++........ ...+..+++.++|+++++ |.. .+.|+.||..+++..... ....
T Consensus 113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~ 189 (305)
T 3dr2_A 113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH 189 (305)
T ss_dssp CTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred CCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence 986 5543222111 134567999999998876 332 256888888666644333 3345
Q ss_pred eEEEEEcCCCCEEEEEECC------CeEEEEECCCCeEE--EEE-ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 003445 146 VNAIRFTPDGRWVVSGGED------NTVKLWDLTAGKLL--HDF-KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (819)
Q Consensus 146 I~sl~fspdg~~L~sgs~D------g~I~IwDl~t~~~i--~~~-~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~ 216 (819)
...++|+||++.|+.+... +.|.+||+..+... ..+ ....+....++++++|++.++ ..+ .|.+||. .
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-~ 266 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-D 266 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-T
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-C
Confidence 6889999999988877665 78999998765411 111 112344567899999985444 444 4999998 4
Q ss_pred CeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEE
Q 003445 217 FELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFS 254 (819)
Q Consensus 217 ~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd 254 (819)
++.+..+.... .+.+++|+++++.|++++.+++..++
T Consensus 267 g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 267 GQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWMLP 303 (305)
T ss_dssp SCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence 67776665554 58899999999999988887654443
No 205
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.42 E-value=4.8e-11 Score=132.42 Aligned_cols=276 Identities=9% Similarity=0.001 Sum_probs=192.8
Q ss_pred EEEeeCCCcEEEEEeC----CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCeEEEEE
Q 003445 22 LKIGRKSSRVLVTGGE----DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA----------ASGTIKLWD 87 (819)
Q Consensus 22 lafsp~~~~~Latgs~----Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs----------~DG~I~IWD 87 (819)
....|++.+++++-.. ++.|.++|..+++.+..+..-..+ . ++++||+++++++. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 3456755554444433 689999999999999988854555 4 99999999887765 367899999
Q ss_pred CCCCeEEEEEcCCC-------CCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 003445 88 LEEAKIVRTLTGHR-------SNCISVDFHPFGEFFASGSL--DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWV 158 (819)
Q Consensus 88 l~s~~~i~~l~~h~-------~~I~sl~fsp~g~~Lasgs~--Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L 158 (819)
..+.+.+..+.... ..-..+.|+|+|++++++.. ++.|.++|+.+++.+.++.... + ...+....+.+
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~ 192 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTF 192 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCcee
Confidence 99999988875321 23457899999999888874 6899999999999999886422 2 22333345677
Q ss_pred EEEECCCeEEEEECCC-CeEEEEEecC----CCCeE-EEEEe-CCCCEEEEEECCCeEEEEECCCCe--EEEEeCC----
Q 003445 159 VSGGEDNTVKLWDLTA-GKLLHDFKCH----EGQIQ-CIDFH-PHEFLLATGSADRTVKFWDLETFE--LIGSAGP---- 225 (819)
Q Consensus 159 ~sgs~Dg~I~IwDl~t-~~~i~~~~~h----~~~I~-sl~fs-pdg~~Lasgs~Dg~I~iwDl~~~~--~l~~~~~---- 225 (819)
++.+.||.+.+.++.+ ++.......+ ..++. ...|. ++|++++ .+.+|.|+++|+.+.. .+..+..
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~ 271 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEA 271 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccc
Confidence 7888999999999976 5653322111 12221 24665 5775555 5568999999997654 3222210
Q ss_pred ------CCCCeeEEEEeCCCCEEEEEEC-----------CCEEEEEecCCceeeeeeccccceeEeEecCCC-EEEE-EE
Q 003445 226 ------ETSGVRCLTFNPDGRTLLCGLH-----------ESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGK-LLGC-SY 286 (819)
Q Consensus 226 ------~~~~I~sl~fspdg~~Lasgs~-----------d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~-lLa~-~~ 286 (819)
.......++++++++.|++... +.+.++|..+.+....+..+..........|++ +|.+ ..
T Consensus 272 ~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~ 351 (386)
T 3sjl_D 272 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST 351 (386)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET
T ss_pred cccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC
Confidence 1223456888999999988653 248888888999888887765443444447876 5655 45
Q ss_pred cCCeEEEEEecCCceee
Q 003445 287 NQSCVGVWVVDISRIEP 303 (819)
Q Consensus 287 ~Dg~V~IW~ld~~~~~p 303 (819)
.++.|.++|..+++...
T Consensus 352 ~~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 352 GDKTLYIHDAESGEELR 368 (386)
T ss_dssp TTTEEEEEETTTCCEEE
T ss_pred CCCeEEEEECCCCcEEE
Confidence 58999999999888653
No 206
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.41 E-value=1.3e-10 Score=123.55 Aligned_cols=237 Identities=14% Similarity=0.182 Sum_probs=164.0
Q ss_pred CCCCeEEEEEcCCCCEEEE-------EECCCeEEEEECCCCeEEEEEc----CCCCCeEEEEEecC-CCEEEEEECCCcE
Q 003445 58 HTSGIDSVSFDSSEVLVAA-------GAASGTIKLWDLEEAKIVRTLT----GHRSNCISVDFHPF-GEFFASGSLDTNL 125 (819)
Q Consensus 58 h~~~V~~l~fspdg~~Las-------gs~DG~I~IWDl~s~~~i~~l~----~h~~~I~sl~fsp~-g~~Lasgs~Dg~I 125 (819)
.-....+++|++++.++++ +..++.|.+||..+++...... ++...+.+++++++ +++++ ++..+.|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCCE
Confidence 3446789999999988877 5778999999988887643322 24467899999999 65444 4445579
Q ss_pred EEEECCCCeEEEE-Eec----CCCCeEEEEEcCCCCEEEEEECC---------------CeEEEEECCCCeEEEEEecCC
Q 003445 126 KIWDIRKKGCIHT-YKG----HTRGVNAIRFTPDGRWVVSGGED---------------NTVKLWDLTAGKLLHDFKCHE 185 (819)
Q Consensus 126 ~IwDi~t~~~i~~-~~~----h~~~I~sl~fspdg~~L~sgs~D---------------g~I~IwDl~t~~~i~~~~~h~ 185 (819)
.+||.. ++.... ... ....+.+++++++|+++++...+ +.|..||.. ++...... +.
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-~~ 171 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-AF 171 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-EE
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-CC
Confidence 999998 665433 221 12357899999999877776554 578888876 55443332 33
Q ss_pred CCeEEEEEe----CCCCEEEEE-ECCCeEEEEECC-CCe-----EEEEeCCCC-CCeeEEEEeCCCCEEEEEEC-CCEEE
Q 003445 186 GQIQCIDFH----PHEFLLATG-SADRTVKFWDLE-TFE-----LIGSAGPET-SGVRCLTFNPDGRTLLCGLH-ESLKV 252 (819)
Q Consensus 186 ~~I~sl~fs----pdg~~Lasg-s~Dg~I~iwDl~-~~~-----~l~~~~~~~-~~I~sl~fspdg~~Lasgs~-d~I~V 252 (819)
.....++|+ |+++.|+.+ ..++.|.+||.. +++ ....+..+. ..+..++++++|+++++... ++|.+
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~ 251 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence 456889999 999766555 467899999986 444 223333333 55789999999988887654 46888
Q ss_pred EEecCCceeeeeeccccceeEeEe-cCCC-EEEEEEcCCeEEEEEecC
Q 003445 253 FSWEPIRCHDAVDVGWSRLSDLNV-HEGK-LLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 253 wd~~~~~~~~~~~~~~s~i~~l~~-~dg~-lLa~~~~Dg~V~IW~ld~ 298 (819)
|+.++++....+......+..+.+ ++++ ++++...++.|..|+++.
T Consensus 252 ~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 252 FGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp ECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 887766655555555444555555 6777 444555668898888764
No 207
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.41 E-value=7.3e-10 Score=122.97 Aligned_cols=250 Identities=10% Similarity=-0.041 Sum_probs=172.2
Q ss_pred EEEeccCCCEEEEEEeeCCCcEEEEEe----------CCCeEEEEECCCCceEEEecCC-------CCCeEEEEEcCCCC
Q 003445 10 QEFVAHSSTVNCLKIGRKSSRVLVTGG----------EDHKVNLWAIGKPNAILSLSGH-------TSGIDSVSFDSSEV 72 (819)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~~Latgs----------~Dg~V~IWdl~~~~~i~~l~~h-------~~~V~~l~fspdg~ 72 (819)
..+.....+ .++|+|++ +.|+++. .++.|.+||..+.+.+..+... ......+.|+|||+
T Consensus 61 ~~i~~g~~p--~i~~spDg-~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~ 137 (373)
T 2mad_H 61 GHVNGGFLP--NPVAAHSG-SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA 137 (373)
T ss_pred EEecCCCCC--CeEECCCC-CEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC
Confidence 344433333 99999955 4555553 3678999999988887766422 13456899999999
Q ss_pred EEEEEEC--CCeEEEEECCCCeEEEE-EcCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeEEEEEe-----cCC
Q 003445 73 LVAAGAA--SGTIKLWDLEEAKIVRT-LTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTYK-----GHT 143 (819)
Q Consensus 73 ~Lasgs~--DG~I~IWDl~s~~~i~~-l~~h~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~t~~~i~~~~-----~h~ 143 (819)
+|+++.. ++.|.++| .+++.+.. +... . ++.+.|++ ..+++.+.||.+.+||. +++...... ...
T Consensus 138 ~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~ 211 (373)
T 2mad_H 138 DLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAA 211 (373)
T ss_pred EEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCC
Confidence 9998874 58899999 99998877 6532 2 24455555 45667778999999999 877664322 111
Q ss_pred CC-eEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEecC----------CCCeEEEEEeCCCCEEEEEEC-----
Q 003445 144 RG-VNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK--LLHDFKCH----------EGQIQCIDFHPHEFLLATGSA----- 205 (819)
Q Consensus 144 ~~-I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~--~i~~~~~h----------~~~I~sl~fspdg~~Lasgs~----- 205 (819)
.+ .....|.+++..++..+.++.+.+.|+..+. .+..+... ......+.++|++..++++..
T Consensus 212 ~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~ 291 (373)
T 2mad_H 212 QNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW 291 (373)
T ss_pred cceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcc
Confidence 22 1234566666655555578899999997552 22333211 122445789999888877653
Q ss_pred -----CCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCC-EEEEEE--CCCEEEEEecCCceeee-eecccc
Q 003445 206 -----DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR-TLLCGL--HESLKVFSWEPIRCHDA-VDVGWS 269 (819)
Q Consensus 206 -----Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~-~Lasgs--~d~I~Vwd~~~~~~~~~-~~~~~s 269 (819)
++.|.++|+.+++.+..+... ....++.|+|||+ .++++. ++.+.|||..+.+.... ...+..
T Consensus 292 ~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~~ 363 (373)
T 2mad_H 292 KLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSG 363 (373)
T ss_pred cccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeecCCCCC
Confidence 358999999999998888543 4579999999999 677665 45799999999887766 444443
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.41 E-value=2e-10 Score=129.13 Aligned_cols=234 Identities=9% Similarity=0.044 Sum_probs=164.1
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCC--eEEEEECCCCeEE
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASG--TIKLWDLEEAKIV 94 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG--~I~IWDl~s~~~i 94 (819)
.....|+|++ +++++++...++.|++||..++........... .. ++|+++++.|+++..++ .|.+|+...+...
T Consensus 131 ~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4688999998 666777777789999999987776655554333 33 99999999998888766 8999998766544
Q ss_pred EEE----cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE----EecCCCCe--EEEEEcCC-CCEEEEEEC
Q 003445 95 RTL----TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT----YKGHTRGV--NAIRFTPD-GRWVVSGGE 163 (819)
Q Consensus 95 ~~l----~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~----~~~h~~~I--~sl~fspd-g~~L~sgs~ 163 (819)
..+ ......+.+++++|++..|+++..++.|+.||..++..... ..++...- ..++|+|+ +.++++-..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 444 22455678899999655666677788999999987764322 22222222 38999995 555555566
Q ss_pred CCeEEEEECCCCeEEEEEecCC---------------CCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCeEEEEeCC--
Q 003445 164 DNTVKLWDLTAGKLLHDFKCHE---------------GQIQCIDFHPHEFLLATGS-ADRTVKFWDLETFELIGSAGP-- 225 (819)
Q Consensus 164 Dg~I~IwDl~t~~~i~~~~~h~---------------~~I~sl~fspdg~~Lasgs-~Dg~I~iwDl~~~~~l~~~~~-- 225 (819)
++.|+.||.... +..+.++. .....++|+|+|.++++-. .++.|+.||+.++........
T Consensus 288 ~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~ 365 (409)
T 3hrp_A 288 LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVD 365 (409)
T ss_dssp TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCC
Confidence 789999997644 33333322 3478999999999888877 789999999888775433221
Q ss_pred ------------CCCCeeEEEEeCCCCEEEEEECC-CEEEEEe
Q 003445 226 ------------ETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (819)
Q Consensus 226 ------------~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (819)
.-.....++++++|.++++...+ .|+.+.+
T Consensus 366 ~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 366 VASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 01357899999997666665444 4665554
No 209
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.40 E-value=5.1e-10 Score=117.56 Aligned_cols=233 Identities=10% Similarity=0.025 Sum_probs=166.6
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEE-EecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL-SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI 93 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~-~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~ 93 (819)
+...+.++++.+ ++.++++...++.|..||.. ++... .+......+.++++.++++++++...++.|..||.. ++.
T Consensus 60 ~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~ 136 (300)
T 2qc5_A 60 PDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI 136 (300)
T ss_dssp TTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCcceeEEECC-CCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE
Confidence 346789999997 56666666667889999987 55432 223344679999999999988877668899999987 665
Q ss_pred EEE-EcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003445 94 VRT-LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT-YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (819)
Q Consensus 94 i~~-l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~-~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwD 171 (819)
... +......+.++++.++++++++...++.|..||. +++.... ...+...+..+++.++|+..++....+.|.+||
T Consensus 137 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 215 (300)
T 2qc5_A 137 YEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRIT 215 (300)
T ss_dssp EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEc
Confidence 432 3334567899999999997666666788999998 5554432 223445688999999998777666678899999
Q ss_pred CCCCeEEEE-EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEE-eCCCCCCeeEEEEeCCCCEEEEEECCC
Q 003445 172 LTAGKLLHD-FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS-AGPETSGVRCLTFNPDGRTLLCGLHES 249 (819)
Q Consensus 172 l~t~~~i~~-~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~-~~~~~~~I~sl~fspdg~~Lasgs~d~ 249 (819)
. +++.... ...+...+.+++++++|.++++...++.|..||. +++.... +......+.+++++++|.++++.. ++
T Consensus 216 ~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~ 292 (300)
T 2qc5_A 216 T-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-CK 292 (300)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-SE
T ss_pred C-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-Cc
Confidence 8 5554332 2234566899999999987777666789999998 4544322 333345688999999998666654 34
Q ss_pred EEEEE
Q 003445 250 LKVFS 254 (819)
Q Consensus 250 I~Vwd 254 (819)
+..++
T Consensus 293 i~~~~ 297 (300)
T 2qc5_A 293 IGKLN 297 (300)
T ss_dssp EEEEE
T ss_pred eEEeC
Confidence 54444
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.38 E-value=8.2e-11 Score=132.51 Aligned_cols=270 Identities=9% Similarity=0.004 Sum_probs=193.6
Q ss_pred CcEEEEEeCC----CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCeEEEEECCCCeEE
Q 003445 29 SRVLVTGGED----HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA----------ASGTIKLWDLEEAKIV 94 (819)
Q Consensus 29 ~~~Latgs~D----g~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs----------~DG~I~IWDl~s~~~i 94 (819)
.+++++...+ +.|.++|..+.+.+..+..-..+ .++++||+++++++. .++.|.++|..+++.+
T Consensus 85 ~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv 162 (426)
T 3c75_H 85 RRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI 162 (426)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE
T ss_pred CEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE
Confidence 3444444433 79999999999999988854455 899999999888775 3678999999999998
Q ss_pred EEEcCC-------CCCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEECC
Q 003445 95 RTLTGH-------RSNCISVDFHPFGEFFASGSL--DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDG-RWVVSGGED 164 (819)
Q Consensus 95 ~~l~~h-------~~~I~sl~fsp~g~~Lasgs~--Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg-~~L~sgs~D 164 (819)
..+.-. ...-..+.|+|+|++++++.. ++.|.++|+.+++.+.++.... . ....|++ ..+++.+.|
T Consensus 163 ~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~d 238 (426)
T 3c75_H 163 ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRD 238 (426)
T ss_dssp EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETT
T ss_pred EEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCC
Confidence 877521 123456899999999998874 5789999999999998887422 1 2333433 566677788
Q ss_pred CeEEEEECCCCeEEEE----EecCCCCe-EEEEEeCCCCEEEEEECCCeEEEEECCCCeEEE--EeCC----------CC
Q 003445 165 NTVKLWDLTAGKLLHD----FKCHEGQI-QCIDFHPHEFLLATGSADRTVKFWDLETFELIG--SAGP----------ET 227 (819)
Q Consensus 165 g~I~IwDl~t~~~i~~----~~~h~~~I-~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~--~~~~----------~~ 227 (819)
|.+.+.++.+++.... +.....++ ..+.|.+++..++..+..+.|.+.|........ .+.. ..
T Consensus 239 G~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p 318 (426)
T 3c75_H 239 GSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP 318 (426)
T ss_dssp SSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred CCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence 8888888866655432 11111221 235678998888777888999999997654321 1110 01
Q ss_pred CCeeEEEEeCCCCEEEEEEC-----------CCEEEEEecCCceeeeeeccccceeEeEecCCC-EEEEEE-cCCeEEEE
Q 003445 228 SGVRCLTFNPDGRTLLCGLH-----------ESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGK-LLGCSY-NQSCVGVW 294 (819)
Q Consensus 228 ~~I~sl~fspdg~~Lasgs~-----------d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~-lLa~~~-~Dg~V~IW 294 (819)
.....++|+++++.+++... +.+.++|..+.+....+..+..+......++|+ +++++. .++.|.|+
T Consensus 319 ~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVI 398 (426)
T 3c75_H 319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIY 398 (426)
T ss_dssp CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEE
Confidence 12234789999998887642 359999999999888887766555555568888 777776 59999999
Q ss_pred EecCCceeee
Q 003445 295 VVDISRIEPY 304 (819)
Q Consensus 295 ~ld~~~~~p~ 304 (819)
|+.+.+...-
T Consensus 399 D~~t~kvv~t 408 (426)
T 3c75_H 399 DAATGEELRS 408 (426)
T ss_dssp ETTTCCEEEE
T ss_pred ECCCCCEEEE
Confidence 9999987744
No 211
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.35 E-value=9.2e-12 Score=138.53 Aligned_cols=172 Identities=15% Similarity=0.127 Sum_probs=136.5
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc-----------eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-----------AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~-----------~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
.++.+++++ ...++++|+.++ +.+|++.+.. ..... .+.. |+.++| ++.+|+++ .+|.|++|
T Consensus 39 ~~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 699999999 556788888875 6679864322 21222 3566 999999 99999998 88999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003445 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (819)
Q Consensus 87 Dl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~ 166 (819)
|+.+.........|...+.++.+.+. .+++++.||.|.+||+.++.... +...|+|++|+|+| ++.|..||.
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~ 183 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRS 183 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSC
T ss_pred EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCc
Confidence 99877665566677788888877654 38889999999999999887653 34579999999999 788999999
Q ss_pred EEEEECCCCeE--EEEE------e---cCCCCeEEEEEeCCCCEEEEEE
Q 003445 167 VKLWDLTAGKL--LHDF------K---CHEGQIQCIDFHPHEFLLATGS 204 (819)
Q Consensus 167 I~IwDl~t~~~--i~~~------~---~h~~~I~sl~fspdg~~Lasgs 204 (819)
+++|+...+.. ..++ . +|...|.++.|.+++.++++-.
T Consensus 184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99999988775 5556 2 3678899999999998888644
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.32 E-value=8e-10 Score=124.17 Aligned_cols=234 Identities=8% Similarity=0.026 Sum_probs=157.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCC--cEEEEECCCCeEEE
Q 003445 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT--NLKIWDIRKKGCIH 137 (819)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg--~I~IwDi~t~~~i~ 137 (819)
.....++|+++++++++...++.|++||+.++............ . ++|+++++.|+++..++ .|++|+...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 36789999999998877777899999999988876665543333 3 99999999999888766 79999987665444
Q ss_pred EE----ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE----EecCCCCe--EEEEEeCC-CCEEEEEECC
Q 003445 138 TY----KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHD----FKCHEGQI--QCIDFHPH-EFLLATGSAD 206 (819)
Q Consensus 138 ~~----~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~----~~~h~~~I--~sl~fspd-g~~Lasgs~D 206 (819)
.+ ......+.+++++|++..|+.+..++.|+.||..++..... ..++...- ..++|+|+ +.++++-..+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 43 21446678999999555666677789999999987764332 12222222 39999995 6666666678
Q ss_pred CeEEEEECCCCeEEEEeCCC--------------CCCeeEEEEeCCCCEEEEEE-CC-CEEEEEecCCceeeeeec----
Q 003445 207 RTVKFWDLETFELIGSAGPE--------------TSGVRCLTFNPDGRTLLCGL-HE-SLKVFSWEPIRCHDAVDV---- 266 (819)
Q Consensus 207 g~I~iwDl~~~~~l~~~~~~--------------~~~I~sl~fspdg~~Lasgs-~d-~I~Vwd~~~~~~~~~~~~---- 266 (819)
+.|+.||.... ........ -.....++|+++|+++++-. .+ .|+.|+...+........
T Consensus 289 ~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~ 367 (409)
T 3hrp_A 289 SSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVA 367 (409)
T ss_dssp TEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCB
T ss_pred CEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCC
Confidence 89999998654 22111111 13478999999999666654 33 578888655543322211
Q ss_pred ----------cccceeEeEe-cCCCEEEEEEcCCeEEEEEe
Q 003445 267 ----------GWSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 296 (819)
Q Consensus 267 ----------~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~l 296 (819)
.......+.+ ++|.++++-..++.|+.+.+
T Consensus 368 g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 368 SQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp SCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 0122334444 45667777777777777665
No 213
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.31 E-value=2e-11 Score=135.81 Aligned_cols=170 Identities=15% Similarity=0.104 Sum_probs=137.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----------EEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q 003445 61 GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK-----------IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWD 129 (819)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~-----------~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwD 129 (819)
.++.+++++...++++|+.++ +.+|++.+.. ..... .+.. |..++| ++.+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999999999999875 6669875332 11222 3556 999999 89999999 789999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeE
Q 003445 130 IRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTV 209 (819)
Q Consensus 130 i~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I 209 (819)
+++.........|...+.++.+.+. .+++++.||.|.+||+.++.... +...|+|++|+|+| ++.|..||++
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence 9887766667778888988888754 38889999999999999887653 34579999999999 7789999999
Q ss_pred EEEECCCCeE--EEEe------C---CCCCCeeEEEEeCCCCEEEE
Q 003445 210 KFWDLETFEL--IGSA------G---PETSGVRCLTFNPDGRTLLC 244 (819)
Q Consensus 210 ~iwDl~~~~~--l~~~------~---~~~~~I~sl~fspdg~~Las 244 (819)
++|+...++. ...+ . .|...|.++.|.+++.++++
T Consensus 185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 9999988775 5555 2 36678999999999998885
No 214
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.28 E-value=1e-09 Score=121.67 Aligned_cols=255 Identities=14% Similarity=0.021 Sum_probs=176.7
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEEEe---------CCCeEEEEECCCCceEEEecCC-------CCCeEEEEEcCCCC
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGG---------EDHKVNLWAIGKPNAILSLSGH-------TSGIDSVSFDSSEV 72 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Latgs---------~Dg~V~IWdl~~~~~i~~l~~h-------~~~V~~l~fspdg~ 72 (819)
+.++..-..+ . ++++|++..++++.. .++.|.+||..+.+.+..+.-. ......+.|+|||+
T Consensus 72 ~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk 149 (386)
T 3sjl_D 72 IGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK 149 (386)
T ss_dssp EEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS
T ss_pred EEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCC
Confidence 3455544445 4 999996655545442 4678999999999998877522 12567899999999
Q ss_pred EEEEEEC--CCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-CeEEEEEecCC----CC
Q 003445 73 LVAAGAA--SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK-KGCIHTYKGHT----RG 145 (819)
Q Consensus 73 ~Lasgs~--DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t-~~~i~~~~~h~----~~ 145 (819)
+++++.. ++.|.++|+.+++.+.++.... + ...+....+.|++.+.||.+.+.++.. ++.......+. .+
T Consensus 150 ~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~ 226 (386)
T 3sjl_D 150 TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEF 226 (386)
T ss_dssp EEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSC
T ss_pred EEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccccc
Confidence 9988864 6899999999999999886422 2 233433456777888999999999976 55433222111 22
Q ss_pred eE-EEEEc-CCCCEEEEEECCCeEEEEECCCCe--EEEEEec----------CCCCeEEEEEeCCCCEEEEEEC------
Q 003445 146 VN-AIRFT-PDGRWVVSGGEDNTVKLWDLTAGK--LLHDFKC----------HEGQIQCIDFHPHEFLLATGSA------ 205 (819)
Q Consensus 146 I~-sl~fs-pdg~~L~sgs~Dg~I~IwDl~t~~--~i~~~~~----------h~~~I~sl~fspdg~~Lasgs~------ 205 (819)
+. ...|. ++|++++ .+.+|.|++.|+.++. .+..+.. ..+....++++++++.++....
T Consensus 227 ~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~ 305 (386)
T 3sjl_D 227 LINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR 305 (386)
T ss_dssp BCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC
T ss_pred ccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccc
Confidence 21 24564 6776555 5668999999997654 2222220 1123345777999888877643
Q ss_pred ----CCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCC-EEEEEEC--CCEEEEEecCCceeeeeeccccc
Q 003445 206 ----DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR-TLLCGLH--ESLKVFSWEPIRCHDAVDVGWSR 270 (819)
Q Consensus 206 ----Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~-~Lasgs~--d~I~Vwd~~~~~~~~~~~~~~s~ 270 (819)
.+.|.++|+.+++.+..+... ..++.|.|++|++ +|+++.. +.+.|+|..+.+....+.....+
T Consensus 306 hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p 376 (386)
T 3sjl_D 306 HKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG 376 (386)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSS
T ss_pred cCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCC
Confidence 257999999999999887643 3678999999997 7777653 46999999999888777665443
No 215
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.26 E-value=4.4e-10 Score=122.74 Aligned_cols=228 Identities=10% Similarity=0.086 Sum_probs=156.6
Q ss_pred CCEEEEEEeeCCCcEEEEEe--CCCeEEEEECCCCceEEEec-------CCCCCeEEEEEcCCCCEEEEEEC-----CCe
Q 003445 17 STVNCLKIGRKSSRVLVTGG--EDHKVNLWAIGKPNAILSLS-------GHTSGIDSVSFDSSEVLVAAGAA-----SGT 82 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs--~Dg~V~IWdl~~~~~i~~l~-------~h~~~V~~l~fspdg~~Lasgs~-----DG~ 82 (819)
..+..+++++ +++++++.. .++.+.||.+.+++ +..+. .|-..+.+++|+++++++++-.. ++.
T Consensus 17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECC-CCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 7899999998 567777753 23435566554444 33222 24568999999999887666433 579
Q ss_pred EEEEECCCCeEEEEEcCC------CCCeEEEEEecCCCEE-EEEE---CCCcEEEEECCCCeEEEEEecCC---------
Q 003445 83 IKLWDLEEAKIVRTLTGH------RSNCISVDFHPFGEFF-ASGS---LDTNLKIWDIRKKGCIHTYKGHT--------- 143 (819)
Q Consensus 83 I~IWDl~s~~~i~~l~~h------~~~I~sl~fsp~g~~L-asgs---~Dg~I~IwDi~t~~~i~~~~~h~--------- 143 (819)
|.+||+.+++.+..+... ...+..+++.+++..+ ++.. .++.|.+||+.+++....+.+|.
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 999999999977776532 2346789999865554 4444 57899999998887666553321
Q ss_pred --------------------CCeEEEEEcCCCCEEEEEECCC-eEEEEECC---CCe-----EEE--EEecCCCCeEEEE
Q 003445 144 --------------------RGVNAIRFTPDGRWVVSGGEDN-TVKLWDLT---AGK-----LLH--DFKCHEGQIQCID 192 (819)
Q Consensus 144 --------------------~~I~sl~fspdg~~L~sgs~Dg-~I~IwDl~---t~~-----~i~--~~~~h~~~I~sl~ 192 (819)
..+..|+|+|+|++|+.+...+ .|..++.. .+. ... ...++.+....++
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia 254 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGIS 254 (343)
T ss_dssp EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEE
T ss_pred eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEE
Confidence 2358899999999998887766 55555532 110 000 1112334566799
Q ss_pred EeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC-CCCCeeEEEEeCCCCEEEEEE
Q 003445 193 FHPHEFLLATGSADRTVKFWDLETFELIGSAGP-ETSGVRCLTFNPDGRTLLCGL 246 (819)
Q Consensus 193 fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~-~~~~I~sl~fspdg~~Lasgs 246 (819)
++++|.++++...++.|.+||..+++....... ....+.+++|.++|.++++..
T Consensus 255 ~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 255 IDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp ECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred ECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 999999999998899999999956664333322 245689999999988777664
No 216
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.25 E-value=8.1e-10 Score=132.44 Aligned_cols=271 Identities=12% Similarity=0.097 Sum_probs=185.3
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCCC----------e-EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003445 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTSG----------I-DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (819)
Q Consensus 31 ~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~----------V-~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~ 99 (819)
.+++++.++.|+.+|..+++.+..+..+... + ..+.+ .+..|++++.||.|..||..+|+.+..+..
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence 5677778899999999999999988643221 0 11222 355788888999999999999999877664
Q ss_pred C--CCCeEEEEEec--CCCEEEEEE------CCCcEEEEECCCCeEEEEEecCC--------------------------
Q 003445 100 H--RSNCISVDFHP--FGEFFASGS------LDTNLKIWDIRKKGCIHTYKGHT-------------------------- 143 (819)
Q Consensus 100 h--~~~I~sl~fsp--~g~~Lasgs------~Dg~I~IwDi~t~~~i~~~~~h~-------------------------- 143 (819)
. ......+...| .+..+++++ .+|.|+.||..+++.+..+....
T Consensus 150 ~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~ 229 (689)
T 1yiq_A 150 RADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVE 229 (689)
T ss_dssp CSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHH
T ss_pred cCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeee
Confidence 2 11111111111 133444443 36899999999999998875211
Q ss_pred -----CCeEEEEEcCCCCEEEEEECCCe-------------------EEEEECCCCeEEEEEec--CC-------CCeEE
Q 003445 144 -----RGVNAIRFTPDGRWVVSGGEDNT-------------------VKLWDLTAGKLLHDFKC--HE-------GQIQC 190 (819)
Q Consensus 144 -----~~I~sl~fspdg~~L~sgs~Dg~-------------------I~IwDl~t~~~i~~~~~--h~-------~~I~s 190 (819)
.....++++|++..++.+..++. |..||..+|+.+..+.. |. .++..
T Consensus 230 ~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l 309 (689)
T 1yiq_A 230 QGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMIL 309 (689)
T ss_dssp HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEE
T ss_pred cCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEE
Confidence 01125788898889999887764 99999999999988874 21 12222
Q ss_pred EEEeCCCC---EEEEEECCCeEEEEECCCCeEEEEeCCCC---------------------------------------C
Q 003445 191 IDFHPHEF---LLATGSADRTVKFWDLETFELIGSAGPET---------------------------------------S 228 (819)
Q Consensus 191 l~fspdg~---~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~---------------------------------------~ 228 (819)
.....+|+ .++.++.+|.++++|..+|+++....... .
T Consensus 310 ~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~ 389 (689)
T 1yiq_A 310 AELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAH 389 (689)
T ss_dssp EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSS
T ss_pred EeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccccc
Confidence 33334665 78899999999999999999874332110 0
Q ss_pred CeeEEEEeCCCCEEEEEEC----------------------------------------------CCEEEEEecCCceee
Q 003445 229 GVRCLTFNPDGRTLLCGLH----------------------------------------------ESLKVFSWEPIRCHD 262 (819)
Q Consensus 229 ~I~sl~fspdg~~Lasgs~----------------------------------------------d~I~Vwd~~~~~~~~ 262 (819)
.-..++|+|+..++++... +.|..||..+++..-
T Consensus 390 ~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W 469 (689)
T 1yiq_A 390 DWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAW 469 (689)
T ss_dssp CSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEE
T ss_pred CCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEe
Confidence 0123789998888886532 347788888887765
Q ss_pred eeeccccceeEeEecCCCEEEEEEcCCeEEEEEecCCceee
Q 003445 263 AVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 263 ~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~p 303 (819)
.+..+...........+.+++++..|+.|++||.++++..-
T Consensus 470 ~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw 510 (689)
T 1yiq_A 470 EVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLW 510 (689)
T ss_dssp EEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccce
Confidence 55544333333334567788889999999999999998763
No 217
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.25 E-value=4e-10 Score=135.19 Aligned_cols=239 Identities=12% Similarity=0.104 Sum_probs=159.2
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCC----CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCC---------
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGED----HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASG--------- 81 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~D----g~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG--------- 81 (819)
|...|..++|+|++..++++.+.. ..|++||+.+++.+.... +......++|+ |++.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 455788999999555444444333 579999999988654311 11113568899 999998888774
Q ss_pred ----eEEEEECCCCe----EEEEEcC-CCCCeEEEEEecCCCEEEEEEC----CCcEEEEECCCCe-EEEEEecCCCCeE
Q 003445 82 ----TIKLWDLEEAK----IVRTLTG-HRSNCISVDFHPFGEFFASGSL----DTNLKIWDIRKKG-CIHTYKGHTRGVN 147 (819)
Q Consensus 82 ----~I~IWDl~s~~----~i~~l~~-h~~~I~sl~fsp~g~~Lasgs~----Dg~I~IwDi~t~~-~i~~~~~h~~~I~ 147 (819)
.|++|++.++. .+..... |......+.|+|+|++|+.... +..|++||+.++. ....+..+.....
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~ 284 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV 284 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence 39999998754 3333333 4456788999999998765443 2589999998763 3445555666555
Q ss_pred EEEEcCCCCEEEEEEC-C---CeEEEEECCCCeE--EEEEecCCCCeEEEEEeCCCCEEEEEECCC---eEEEEECCCCe
Q 003445 148 AIRFTPDGRWVVSGGE-D---NTVKLWDLTAGKL--LHDFKCHEGQIQCIDFHPHEFLLATGSADR---TVKFWDLETFE 218 (819)
Q Consensus 148 sl~fspdg~~L~sgs~-D---g~I~IwDl~t~~~--i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg---~I~iwDl~~~~ 218 (819)
.. |+++|..|+..+. + +.|..||+.++.. ...+..|...+. .|++++..|+....++ .|++||+..+.
T Consensus 285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR 361 (693)
T ss_dssp EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe
Confidence 55 6667776665543 2 6799999987654 344555655554 8999988887766544 68999998554
Q ss_pred EEEEeC-CCCCCeeEEEEeCCCCEEEEEEC-----CCEEEEEecCCc
Q 003445 219 LIGSAG-PETSGVRCLTFNPDGRTLLCGLH-----ESLKVFSWEPIR 259 (819)
Q Consensus 219 ~l~~~~-~~~~~I~sl~fspdg~~Lasgs~-----d~I~Vwd~~~~~ 259 (819)
...+. +..+.+..+.+++++..|+.... ..+..|++.+++
T Consensus 362 -~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 362 -VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp -EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred -eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 34443 34455777888888887765433 246666665554
No 218
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.24 E-value=4.1e-10 Score=135.06 Aligned_cols=243 Identities=17% Similarity=0.165 Sum_probs=158.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCc-------
Q 003445 57 GHTSGIDSVSFDSSEVLVAAGA-----ASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTN------- 124 (819)
Q Consensus 57 ~h~~~V~~l~fspdg~~Lasgs-----~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~------- 124 (819)
+|...+..+.|+|||++|+.+. ....|++||+.+++.+.... +......++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 3556788999999999888543 23579999999998654321 11112467899 9999999887743
Q ss_pred ------EEEEECCCCe----EEEEEec-CCCCeEEEEEcCCCCEEEEEEC----CCeEEEEECCCCe-EEEEEecCCCCe
Q 003445 125 ------LKIWDIRKKG----CIHTYKG-HTRGVNAIRFTPDGRWVVSGGE----DNTVKLWDLTAGK-LLHDFKCHEGQI 188 (819)
Q Consensus 125 ------I~IwDi~t~~----~i~~~~~-h~~~I~sl~fspdg~~L~sgs~----Dg~I~IwDl~t~~-~i~~~~~h~~~I 188 (819)
|++|++.+.. .+..... |...+..+.|+|||++|+.... .+.|++||+.++. ....+..+....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 9999998764 3333333 4556788999999998865543 2589999998763 344555555555
Q ss_pred EEEEEeCCCCEEEEEE-CC---CeEEEEECCCCeE--EEEeCCCCCCeeEEEEeCCCCEEEEEE-CC---CEEEEEecCC
Q 003445 189 QCIDFHPHEFLLATGS-AD---RTVKFWDLETFEL--IGSAGPETSGVRCLTFNPDGRTLLCGL-HE---SLKVFSWEPI 258 (819)
Q Consensus 189 ~sl~fspdg~~Lasgs-~D---g~I~iwDl~~~~~--l~~~~~~~~~I~sl~fspdg~~Lasgs-~d---~I~Vwd~~~~ 258 (819)
... |+++|..|+..+ .+ +.|..||+.++.. ...+..+...+. .|+++++.|+... .+ .|.+|+++..
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 555 566665555444 33 6899999987653 233444544444 8999999887654 33 3777777654
Q ss_pred ceeeeeec-cccceeEeEe-cCCCEEEEEEcC----CeEEEEEecCCceeeee
Q 003445 259 RCHDAVDV-GWSRLSDLNV-HEGKLLGCSYNQ----SCVGVWVVDISRIEPYT 305 (819)
Q Consensus 259 ~~~~~~~~-~~s~i~~l~~-~dg~lLa~~~~D----g~V~IW~ld~~~~~p~~ 305 (819)
.... +.. ....+..+.. +++..++..+.+ +.|..|+++.++...+.
T Consensus 361 ~~~~-l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 361 RVRE-VALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp EEEE-ECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred eeEE-eecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 4332 222 2222333333 466666655554 78999998877765443
No 219
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.23 E-value=6.8e-09 Score=110.68 Aligned_cols=225 Identities=10% Similarity=0.090 Sum_probs=150.7
Q ss_pred cCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe
Q 003445 56 SGHTSGIDSVSFDSSE-VLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG 134 (819)
Q Consensus 56 ~~h~~~V~~l~fspdg-~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~ 134 (819)
..+..-..+..|++++ .++++...++.|..||..+++.. .+. ....+.+++++++|+++++ . ++.|.+||..+++
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence 3344556789999965 45666666899999999887653 333 4567999999999995554 4 5679999998876
Q ss_pred EEEEEecC----CCCeEEEEEcCCCCEEEEEEC-----------CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCE
Q 003445 135 CIHTYKGH----TRGVNAIRFTPDGRWVVSGGE-----------DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFL 199 (819)
Q Consensus 135 ~i~~~~~h----~~~I~sl~fspdg~~L~sgs~-----------Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~ 199 (819)
........ ...++.++++|+|+++++... .+.|..+|.. ++... +..+....+.++|+|+++.
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTSCE
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCCCE
Confidence 54333221 234788999999996665432 2345555543 33333 2223345689999999986
Q ss_pred EEE-EECCCeEEEEEC--CCCeE-----EEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeeccccc
Q 003445 200 LAT-GSADRTVKFWDL--ETFEL-----IGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSR 270 (819)
Q Consensus 200 Las-gs~Dg~I~iwDl--~~~~~-----l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~ 270 (819)
|+. .+.++.|.+||+ .++.. +..+......+..++++++|++.++...+ .|.+|+.++++....+......
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~ 242 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDK 242 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSB
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCC
Confidence 654 555789999997 45543 22233334567899999999877776654 4888887778887777766555
Q ss_pred eeEeEe--cCCCEEEEEE
Q 003445 271 LSDLNV--HEGKLLGCSY 286 (819)
Q Consensus 271 i~~l~~--~dg~lLa~~~ 286 (819)
+..+.+ ++++.|.++.
T Consensus 243 ~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 243 TTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEEEEEESGGGCEEEEEE
T ss_pred ceEEEEeCCCCCEEEEEc
Confidence 555555 4555555444
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.23 E-value=2e-09 Score=115.20 Aligned_cols=232 Identities=11% Similarity=0.021 Sum_probs=155.9
Q ss_pred ceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEE
Q 003445 50 NAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIW 128 (819)
Q Consensus 50 ~~i~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~Iw 128 (819)
..+..+...........|+++++ +++++..++.|..|+. +++ ...+..+...+..+++.++|+++++...++.|.+|
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRS 112 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEE
Confidence 34444555566788999999998 6667677899999998 454 34455566778999999999977666566889999
Q ss_pred ECCCCeEEEEEecC----CCCeEEEEEcCCCCEEEE----EEC-------------CCeEEEEECCCCeEEEEEecCCCC
Q 003445 129 DIRKKGCIHTYKGH----TRGVNAIRFTPDGRWVVS----GGE-------------DNTVKLWDLTAGKLLHDFKCHEGQ 187 (819)
Q Consensus 129 Di~t~~~i~~~~~h----~~~I~sl~fspdg~~L~s----gs~-------------Dg~I~IwDl~t~~~i~~~~~h~~~ 187 (819)
|.. ++........ ...+..+++.++|+++++ |.. .+.|..||..+++..... ....
T Consensus 113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~ 189 (305)
T 3dr2_A 113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH 189 (305)
T ss_dssp CTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred CCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence 986 5433222111 134678999999997776 332 356888888777654433 3345
Q ss_pred eEEEEEeCCCCEEEEEECC------CeEEEEECCCCeEE--EE-eCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCC
Q 003445 188 IQCIDFHPHEFLLATGSAD------RTVKFWDLETFELI--GS-AGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPI 258 (819)
Q Consensus 188 I~sl~fspdg~~Lasgs~D------g~I~iwDl~~~~~l--~~-~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~ 258 (819)
...++|+|+++.|+.+... +.|++||+...... .. ..........++++++|++.+ +..++|.+|+.+ +
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~gv~~~~~~-g 267 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGTGVCVFDSD-G 267 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSSEEEEECTT-S
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCCcEEEECCC-C
Confidence 6889999999988877665 78999998765411 11 122234457899999999554 446678888764 4
Q ss_pred ceeeeeeccccceeEeEe-cCCCEEEEEEcCC
Q 003445 259 RCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQS 289 (819)
Q Consensus 259 ~~~~~~~~~~s~i~~l~~-~dg~lLa~~~~Dg 289 (819)
+....+..... ...+.+ ++++.|..+..++
T Consensus 268 ~~~~~~~~~~~-~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 268 QLLGHIPTPGT-ASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp CEEEEEECSSC-CCEEEECTTSCEEEEEETTE
T ss_pred CEEEEEECCCc-eeEEEEeCCCCEEEEEcCCe
Confidence 44555544443 334433 6777777777653
No 221
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.23 E-value=1.6e-09 Score=129.73 Aligned_cols=269 Identities=10% Similarity=0.037 Sum_probs=189.2
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCCC-----------eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003445 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTSG-----------IDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (819)
Q Consensus 31 ~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~-----------V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~ 99 (819)
.|++++.++.|+.+|..+++.+..+...... ...+++ ++..|++++.|+.|..+|..+|+.+..+..
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 156 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQNT 156 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEET
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeeecC
Confidence 4666777899999999999999988743210 112333 456788888999999999999999888775
Q ss_pred C-C----CCeEE-EEEecCCCEEEEEEC------CCcEEEEECCCCeEEEEEecCCCC----------------------
Q 003445 100 H-R----SNCIS-VDFHPFGEFFASGSL------DTNLKIWDIRKKGCIHTYKGHTRG---------------------- 145 (819)
Q Consensus 100 h-~----~~I~s-l~fsp~g~~Lasgs~------Dg~I~IwDi~t~~~i~~~~~h~~~---------------------- 145 (819)
+ . ..+.+ ... .+..+++++. +|.|+.||..+++.+..+......
T Consensus 157 ~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~ 234 (677)
T 1kb0_A 157 FEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (677)
T ss_dssp TTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred CcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCc
Confidence 4 2 11111 111 2445555543 699999999999999888643211
Q ss_pred ----------eEEEEEcCCCCEEEEEECCC-------------------eEEEEECCCCeEEEEEec--CC-------CC
Q 003445 146 ----------VNAIRFTPDGRWVVSGGEDN-------------------TVKLWDLTAGKLLHDFKC--HE-------GQ 187 (819)
Q Consensus 146 ----------I~sl~fspdg~~L~sgs~Dg-------------------~I~IwDl~t~~~i~~~~~--h~-------~~ 187 (819)
...++++|++..++.+..++ .|..+|..+|+.+..+.. |. ..
T Consensus 235 ~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 314 (677)
T 1kb0_A 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (677)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCC
Confidence 13578889889998887664 599999999999988774 21 12
Q ss_pred eEEEEEeCCC---CEEEEEECCCeEEEEECCCCeEEEEeCCCCC-----------Ce-----------------------
Q 003445 188 IQCIDFHPHE---FLLATGSADRTVKFWDLETFELIGSAGPETS-----------GV----------------------- 230 (819)
Q Consensus 188 I~sl~fspdg---~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~-----------~I----------------------- 230 (819)
...+....+| ..|+.++.+|.|+++|..+|+.+..+..... ++
T Consensus 315 p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~ 394 (677)
T 1kb0_A 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN 394 (677)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC
T ss_pred cEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccC
Confidence 2333444577 6899999999999999999998876542210 01
Q ss_pred -eEEEEeCCCCEEEEEEC--------------------------------------------CCEEEEEecCCceeeeee
Q 003445 231 -RCLTFNPDGRTLLCGLH--------------------------------------------ESLKVFSWEPIRCHDAVD 265 (819)
Q Consensus 231 -~sl~fspdg~~Lasgs~--------------------------------------------d~I~Vwd~~~~~~~~~~~ 265 (819)
..++|+|++.++++... +.|..||..+++..-.+.
T Consensus 395 w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~ 474 (677)
T 1kb0_A 395 WHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE 474 (677)
T ss_dssp SSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE
T ss_pred CCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC
Confidence 25788999888887532 347888888887765555
Q ss_pred ccccceeEeEecCCCEEEEEEcCCeEEEEEecCCceee
Q 003445 266 VGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 266 ~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~p 303 (819)
.............+.+++++..|+.+++||+.+++..-
T Consensus 475 ~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw 512 (677)
T 1kb0_A 475 HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW 512 (677)
T ss_dssp ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceee
Confidence 44332233344567788888999999999999988753
No 222
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.22 E-value=1.6e-08 Score=111.16 Aligned_cols=264 Identities=10% Similarity=0.026 Sum_probs=175.0
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCCC---------CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCC
Q 003445 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHT---------SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGH 100 (819)
Q Consensus 30 ~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~---------~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h 100 (819)
..+++++.++.|..||..+++.+..+.... ..+.+.. ..++..+++++.++.|..+|..+++.+......
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 132 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA 132 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence 357778888999999999999987766421 2232222 224557778889999999999999988776644
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCe-----EEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 003445 101 RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGV-----NAIRFTPDGRWVVSGGEDNTVKLWDLTAG 175 (819)
Q Consensus 101 ~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I-----~sl~fspdg~~L~sgs~Dg~I~IwDl~t~ 175 (819)
.......... +..+++++.++.|+.+|..+++.+..+....... ...... +..++.++.++.|..+|..+|
T Consensus 133 ~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG 208 (376)
T 3q7m_A 133 GEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQG 208 (376)
T ss_dssp SCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTC
T ss_pred CceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCC
Confidence 3222122222 4578888899999999999999988876432211 122222 456888888999999999999
Q ss_pred eEEEEEecCCCC----eEE---EEEeC--CCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003445 176 KLLHDFKCHEGQ----IQC---IDFHP--HEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (819)
Q Consensus 176 ~~i~~~~~h~~~----I~s---l~fsp--dg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs 246 (819)
+.+..+...... +.. +...| .+..++.++.++.+..+|..+++.+...... ....+... +..+++++
T Consensus 209 ~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~~~~--~~~l~~~~ 284 (376)
T 3q7m_A 209 QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG--SVNDFIVD--GNRIYLVD 284 (376)
T ss_dssp CEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC--CEEEEEEE--TTEEEEEE
T ss_pred cEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC--CCCCceEE--CCEEEEEc
Confidence 988877632110 000 11111 2457778888999999999999988776532 34444443 44555555
Q ss_pred C-CCEEEEEecCCceeeeee-ccccceeEeEecCCCEEEEEEcCCeEEEEEecCCceee
Q 003445 247 H-ESLKVFSWEPIRCHDAVD-VGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 247 ~-d~I~Vwd~~~~~~~~~~~-~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~p 303 (819)
. +.+..||..+++..-... ............ +..|.++..+|.|.+||..++++.-
T Consensus 285 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~-~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 285 QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY-NGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp TTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE-TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCCeEEEEECCCCcEEEeecccCCCcccCCEEE-CCEEEEEeCCCeEEEEECCCCcEEE
Confidence 4 479999988877654443 222222222333 4567777889999999999988754
No 223
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.19 E-value=1.6e-08 Score=111.10 Aligned_cols=256 Identities=11% Similarity=0.025 Sum_probs=170.1
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCe-----
Q 003445 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNC----- 104 (819)
Q Consensus 30 ~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I----- 104 (819)
..+++++.++.|..+|..+++.+................ +..+++++.+|.|..+|..+++.+..+.......
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~ 181 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGE 181 (376)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence 357778889999999999999988776443222222222 4477788899999999999999887766432211
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCC----eE---EEEEcC--CCCEEEEEECCCeEEEEECCCC
Q 003445 105 ISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRG----VN---AIRFTP--DGRWVVSGGEDNTVKLWDLTAG 175 (819)
Q Consensus 105 ~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~----I~---sl~fsp--dg~~L~sgs~Dg~I~IwDl~t~ 175 (819)
...... +..+++++.++.|..+|..+++.+..+...... +. .+...| .+..++.++.++.|..+|..+|
T Consensus 182 ~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG 259 (376)
T 3q7m_A 182 SAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG 259 (376)
T ss_dssp CCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC
T ss_pred CCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC
Confidence 112222 457888888999999999999988877632110 00 011111 3567888888999999999999
Q ss_pred eEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC-CCCeeEEEEeCCCCEEEEEECC-CEEEE
Q 003445 176 KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE-TSGVRCLTFNPDGRTLLCGLHE-SLKVF 253 (819)
Q Consensus 176 ~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~-~~~I~sl~fspdg~~Lasgs~d-~I~Vw 253 (819)
+.+..... .....+.. ++..|+.++.++.|..||..+++.+...... ...+...... +..|++++.+ .+.+|
T Consensus 260 ~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~ 333 (376)
T 3q7m_A 260 QIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWI 333 (376)
T ss_dssp CEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEE
T ss_pred cEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEE
Confidence 98877653 33444444 3567888888999999999999988776522 2223333332 3466666655 59999
Q ss_pred EecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEE
Q 003445 254 SWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWV 295 (819)
Q Consensus 254 d~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ 295 (819)
|..+++...........+.......+..|.++..+|.|..|+
T Consensus 334 d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 334 NVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp ETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred ECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 988888766555422222221112355667778889998886
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.18 E-value=4e-12 Score=140.86 Aligned_cols=202 Identities=12% Similarity=0.045 Sum_probs=120.4
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCC-eE-E
Q 003445 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSN-CI-S 106 (819)
Q Consensus 29 ~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~-I~-s 106 (819)
+..+++++.||.|+.||..+++.+..+.. +.+.+..+..++..+++++.||.|+.||..+++.+..+..+... +. +
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 45688899999999999999999998886 55666666677878888889999999999998876665433111 10 0
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCC
Q 003445 107 VDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEG 186 (819)
Q Consensus 107 l~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~ 186 (819)
..+. .+..+++++.++.|+.||..+++.+..+..+. ...++|++..+++++.++.|+.||.++|+.+..+..+.
T Consensus 87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~- 160 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD- 160 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-
T ss_pred ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-
Confidence 0111 34577888889999999999999988877543 23456788899999999999999999998776654321
Q ss_pred CeEEEEEeCCC---CEEEEEECCCeEEEEECCCCeEEEEeCCCCCCee-EEEEeCCCC
Q 003445 187 QIQCIDFHPHE---FLLATGSADRTVKFWDLETFELIGSAGPETSGVR-CLTFNPDGR 240 (819)
Q Consensus 187 ~I~sl~fspdg---~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~-sl~fspdg~ 240 (819)
.....+..+. ..+++++.||.|+.||..+++.+...... .++. ...++++|.
T Consensus 161 -~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 161 -YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA-SPVVAFYVWQREGL 216 (369)
T ss_dssp -ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS-SCEEEEEECTTSSC
T ss_pred -ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC-CceEEEEEecCCce
Confidence 1222333322 56777889999999999999988776643 3443 344455654
No 225
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.18 E-value=2.8e-09 Score=120.00 Aligned_cols=255 Identities=15% Similarity=0.040 Sum_probs=177.8
Q ss_pred EEEEeccCCCEEEEEEeeCCCcEEEEEe---------CCCeEEEEECCCCceEEEecCC-------CCCeEEEEEcCCCC
Q 003445 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGG---------EDHKVNLWAIGKPNAILSLSGH-------TSGIDSVSFDSSEV 72 (819)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~~Latgs---------~Dg~V~IWdl~~~~~i~~l~~h-------~~~V~~l~fspdg~ 72 (819)
+.++..-..+ .++++|++..++++.. .++.|.++|..+.+.+..+.-- ......+.|+||++
T Consensus 112 v~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk 189 (426)
T 3c75_H 112 LGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNK 189 (426)
T ss_dssp EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSS
T ss_pred EEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCC
Confidence 3444444445 8999996665555542 4678999999999998877521 23456899999999
Q ss_pred EEEEEEC--CCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeEEEEE----ecCCCC
Q 003445 73 LVAAGAA--SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTY----KGHTRG 145 (819)
Q Consensus 73 ~Lasgs~--DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~t~~~i~~~----~~h~~~ 145 (819)
+++++.. ++.|.++|+.+++.+..+.... + ....|++ ..+++.+.||.+.+.+..+++..... .....+
T Consensus 190 ~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p 265 (426)
T 3c75_H 190 NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDEL 265 (426)
T ss_dssp EEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSC
T ss_pred EEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCc
Confidence 9998874 5899999999999998887422 1 2333433 56677778888888888666554321 111112
Q ss_pred e-EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE--EEec----------CCCCeEEEEEeCCCCEEEEEEC-------
Q 003445 146 V-NAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLH--DFKC----------HEGQIQCIDFHPHEFLLATGSA------- 205 (819)
Q Consensus 146 I-~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~--~~~~----------h~~~I~sl~fspdg~~Lasgs~------- 205 (819)
+ ..+.|.+++..++.....+.|.+.|...+.... .+.. .......++++|++..+++...
T Consensus 266 ~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gth 345 (426)
T 3c75_H 266 LINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKH 345 (426)
T ss_dssp BCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCT
T ss_pred eeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccc
Confidence 1 245688998888887888999999987654221 1110 0111223689999887777642
Q ss_pred ---CCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCC-EEEEEEC--CCEEEEEecCCceeeee-eccccc
Q 003445 206 ---DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR-TLLCGLH--ESLKVFSWEPIRCHDAV-DVGWSR 270 (819)
Q Consensus 206 ---Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~-~Lasgs~--d~I~Vwd~~~~~~~~~~-~~~~s~ 270 (819)
++.|.++|+.+++.+..+... .....+.|+|||+ .+++... +.+.|+|..+.+....+ ..+..+
T Consensus 346 k~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~P 416 (426)
T 3c75_H 346 KAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQLGRGP 416 (426)
T ss_dssp TSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCSSSC
T ss_pred cCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCCCCC
Confidence 357999999999999887543 2478999999999 8888773 56999999998887765 444443
No 226
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.15 E-value=1.6e-09 Score=119.97 Aligned_cols=262 Identities=8% Similarity=-0.020 Sum_probs=179.5
Q ss_pred CcEEEEEeCCC----eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCeEEEEECCCCeEE
Q 003445 29 SRVLVTGGEDH----KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA----------ASGTIKLWDLEEAKIV 94 (819)
Q Consensus 29 ~~~Latgs~Dg----~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs----------~DG~I~IWDl~s~~~i 94 (819)
.+++++...++ .|.++|..+++.+..+..-..+ .+.|+||+++++++. .++.|.+||+.+++.+
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv 109 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI 109 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE
Confidence 44555555555 8889999999999998755555 799999999888886 3689999999999999
Q ss_pred EEEcCC-------CCCeEEEEEecCCCEEEEEEC--CCcEEE--EECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEE
Q 003445 95 RTLTGH-------RSNCISVDFHPFGEFFASGSL--DTNLKI--WDIRKKGCIHTYKGHTRGVNAIRFTPDG-RWVVSGG 162 (819)
Q Consensus 95 ~~l~~h-------~~~I~sl~fsp~g~~Lasgs~--Dg~I~I--wDi~t~~~i~~~~~h~~~I~sl~fspdg-~~L~sgs 162 (819)
.++..+ ...-..+.|+|+|++++++.. +..|.+ +|..+ +..+... +. +.+.|+| ..+++.+
T Consensus 110 ~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~ 182 (368)
T 1mda_H 110 ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGS 182 (368)
T ss_dssp EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCC
T ss_pred EEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEc
Confidence 988633 123457899999999998875 456888 99877 4444321 11 1223444 3445566
Q ss_pred CCCeEEEEECCC-----CeEEE----EEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe--EEEEeCCC-----
Q 003445 163 EDNTVKLWDLTA-----GKLLH----DFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE--LIGSAGPE----- 226 (819)
Q Consensus 163 ~Dg~I~IwDl~t-----~~~i~----~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~--~l~~~~~~----- 226 (819)
.||.+.+.|+.+ ++... .+.....+. . .+++..++..+. +.+.+.|+.... .+..+...
T Consensus 183 ~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~ 257 (368)
T 1mda_H 183 CPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRK 257 (368)
T ss_dssp CTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHH
T ss_pred CCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccc
Confidence 788888889886 43321 111122333 3 566666666666 999999997532 33322211
Q ss_pred -----CCCeeEEEEeCCCCEEEEEEC----------CCEEEEEecCCceeeeeeccccceeEeEecCCC-EEEEEE-cCC
Q 003445 227 -----TSGVRCLTFNPDGRTLLCGLH----------ESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGK-LLGCSY-NQS 289 (819)
Q Consensus 227 -----~~~I~sl~fspdg~~Lasgs~----------d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~-lLa~~~-~Dg 289 (819)
......+.|+|||+.++++.. +++.+||+.+.+....+..+..+......+||+ ++++.. .++
T Consensus 258 ~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~ 337 (368)
T 1mda_H 258 ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTE 337 (368)
T ss_dssp HTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTT
T ss_pred ccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCC
Confidence 011223789999999887632 357799999999888887766544444457886 566666 599
Q ss_pred eEEEEEecCCceeee
Q 003445 290 CVGVWVVDISRIEPY 304 (819)
Q Consensus 290 ~V~IW~ld~~~~~p~ 304 (819)
.|.++|+.+.++...
T Consensus 338 ~VsVID~~t~kvv~~ 352 (368)
T 1mda_H 338 VLDIYDAASDQDQSS 352 (368)
T ss_dssp EEEEEESSSCEEEEE
T ss_pred eEEEEECCCCcEEEE
Confidence 999999999887643
No 227
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.15 E-value=6.1e-08 Score=104.94 Aligned_cols=217 Identities=10% Similarity=-0.038 Sum_probs=142.8
Q ss_pred CeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 003445 61 GIDSVSFDSSE-VLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY 139 (819)
Q Consensus 61 ~V~~l~fspdg-~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~ 139 (819)
-..+..|++++ .++++...++.|.+||..+++... +. ....+.+++|.++|+++++. .+ .|++||..+++.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 45778999975 456666678999999998876543 33 34679999999999876654 44 4999999887754332
Q ss_pred ec----CCCCeEEEEEcCCCCEEEEEEC------CCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEE-ECCCe
Q 003445 140 KG----HTRGVNAIRFTPDGRWVVSGGE------DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATG-SADRT 208 (819)
Q Consensus 140 ~~----h~~~I~sl~fspdg~~L~sgs~------Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasg-s~Dg~ 208 (819)
.. ....+..++++|+|+++++... .+.|..+| +++... +..+......++|+|+++.|+.+ +.++.
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 21 1235889999999997665432 25677777 455433 32233457899999999876555 45789
Q ss_pred EEEEECC--CC-e-----EEEEeCCCCCCeeEEEEeCCCCEEEEEEC-CCEEEEEecCCceeeeeeccccceeEeEe--c
Q 003445 209 VKFWDLE--TF-E-----LIGSAGPETSGVRCLTFNPDGRTLLCGLH-ESLKVFSWEPIRCHDAVDVGWSRLSDLNV--H 277 (819)
Q Consensus 209 I~iwDl~--~~-~-----~l~~~~~~~~~I~sl~fspdg~~Lasgs~-d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~--~ 277 (819)
|.+||+. ++ . .+..+......+..++++++|.++++... ++|.+|+. .++....+......+..+.+ .
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~ 281 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGP 281 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEEST
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecC
Confidence 9999986 55 2 23333333455788999999987776654 45888876 34444444444434444443 3
Q ss_pred CCCEEEEE
Q 003445 278 EGKLLGCS 285 (819)
Q Consensus 278 dg~lLa~~ 285 (819)
+++.|.++
T Consensus 282 d~~~L~vt 289 (326)
T 2ghs_A 282 DASRLLVT 289 (326)
T ss_dssp TSCEEEEE
T ss_pred CCCEEEEE
Confidence 44444333
No 228
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.14 E-value=5.7e-10 Score=119.42 Aligned_cols=268 Identities=9% Similarity=-0.039 Sum_probs=172.4
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~ 96 (819)
..+.++.+.+ ++. |+.++.+ |..||. +++.+..+...........+. +..|+.++.++.|..+|.. ++....
T Consensus 60 ~~~~~~~~~~-~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~ 131 (330)
T 3hxj_A 60 IIECRPSIGK-DGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWR 131 (330)
T ss_dssp EEEECCEETT-TTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEE
T ss_pred CcccceEEec-CCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEE
Confidence 3445566654 443 5555544 888885 555544333222222233333 5567778889999999998 777766
Q ss_pred EcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003445 97 LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK 176 (819)
Q Consensus 97 l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~ 176 (819)
+..+...+.++...+++. ++.++.++.|..||.. ++.+..+......+.++.+.++|..+ .++ +.|..|| .+++
T Consensus 132 ~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~ 205 (330)
T 3hxj_A 132 FKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGT 205 (330)
T ss_dssp EECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSC
T ss_pred EcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCc
Confidence 665555566667776665 6667788999999998 88777777666667788887787744 444 8899999 7788
Q ss_pred EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEec
Q 003445 177 LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (819)
Q Consensus 177 ~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (819)
....+......+.++...++|. |..++.++.|..+|. +++.+..+......+..+.+.++|.+.+...++++..|+-
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~- 282 (330)
T 3hxj_A 206 EKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP- 282 (330)
T ss_dssp EEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-
T ss_pred EEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-
Confidence 7777766566688888888875 555667888888884 5666666554444455666776776555444447888874
Q ss_pred CCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEEecCCce
Q 003445 257 PIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRI 301 (819)
Q Consensus 257 ~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~ 301 (819)
+++....+......+..+....+..|..+..+|.+++...+..+.
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~~~~ 327 (330)
T 3hxj_A 283 DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNLEHHH 327 (330)
T ss_dssp TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC-----
T ss_pred CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEecccccc
Confidence 455444444444444555553334455688889988877665443
No 229
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.13 E-value=3e-10 Score=121.59 Aligned_cols=252 Identities=10% Similarity=-0.006 Sum_probs=169.9
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEe
Q 003445 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFH 110 (819)
Q Consensus 31 ~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fs 110 (819)
.++.++.++.|..|| .+++....+..+...+.++...+++.++ .++.+ |..||. +++.+..+...........+.
T Consensus 32 ~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~ 106 (330)
T 3hxj_A 32 TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIY-FGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF 106 (330)
T ss_dssp CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEEC-CSSCE--EEEECC-CGGGGGGSCC-----CCEEEE
T ss_pred eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEE-EecCc--EEEECC-CCcEEEEEECCCCcccCceEE
Confidence 467777888899999 8888876655444556777777777544 44444 888885 554433222222222223333
Q ss_pred cCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEE
Q 003445 111 PFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQC 190 (819)
Q Consensus 111 p~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~s 190 (819)
+..+.+++.++.|..||.. ++....+..+...+.++...+++. ++.++.++.|..||.. ++.+..+......+.+
T Consensus 107 --~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~ 181 (330)
T 3hxj_A 107 --EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSA 181 (330)
T ss_dssp --TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSC
T ss_pred --CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceee
Confidence 5677888889999999998 777777766666667777777777 6667788999999998 8887777765666777
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeeeeeccccc
Q 003445 191 IDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSR 270 (819)
Q Consensus 191 l~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~s~ 270 (819)
+.+.+++.+++. + +.|..|| .+++.+.........+.++.+.++|.+.+.+.++++..|+- .++....+......
T Consensus 182 ~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~ 256 (330)
T 3hxj_A 182 ASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRI 256 (330)
T ss_dssp CEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCC
T ss_pred eEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCc
Confidence 778778775544 4 7899999 77887777776667788999998887666555567777753 33333333333332
Q ss_pred eeEeEecCCCEEEEEEcCCeEEEEEec
Q 003445 271 LSDLNVHEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 271 i~~l~~~dg~lLa~~~~Dg~V~IW~ld 297 (819)
...+....+..|.++..++.|..++.+
T Consensus 257 ~~~~~~~~~g~l~v~t~~ggl~~~d~~ 283 (330)
T 3hxj_A 257 ESSPVIGNTDTIYFGSYDGHLYAINPD 283 (330)
T ss_dssp CSCCEECTTSCEEEECTTCEEEEECTT
T ss_pred cccceEcCCCeEEEecCCCCEEEECCC
Confidence 333444434456667778888888864
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.09 E-value=1.5e-08 Score=121.08 Aligned_cols=251 Identities=13% Similarity=0.076 Sum_probs=174.4
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCC-C----CCeEE-EEEcCCCCEEEEEEC------CCeEEEEECCCCeEEEEE
Q 003445 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGH-T----SGIDS-VSFDSSEVLVAAGAA------SGTIKLWDLEEAKIVRTL 97 (819)
Q Consensus 30 ~~Latgs~Dg~V~IWdl~~~~~i~~l~~h-~----~~V~~-l~fspdg~~Lasgs~------DG~I~IWDl~s~~~i~~l 97 (819)
..|++++.|+.|..+|..+++.+..+..+ . ..+.. ... .+..+++++. +|.|+.||..+|+.+..+
T Consensus 129 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 35777888999999999999999888754 2 11111 111 2345555543 699999999999998777
Q ss_pred cCCCCC--------------------------------eEEEEEecCCCEEEEEECCC-------------------cEE
Q 003445 98 TGHRSN--------------------------------CISVDFHPFGEFFASGSLDT-------------------NLK 126 (819)
Q Consensus 98 ~~h~~~--------------------------------I~sl~fsp~g~~Lasgs~Dg-------------------~I~ 126 (819)
...... ...+++.|++..++.++.++ .|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~ 286 (677)
T 1kb0_A 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV 286 (677)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence 542211 12568889888888887664 599
Q ss_pred EEECCCCeEEEEEec--CC-------CCeEEEEEcCCC---CEEEEEECCCeEEEEECCCCeEEEEEecCCC--------
Q 003445 127 IWDIRKKGCIHTYKG--HT-------RGVNAIRFTPDG---RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEG-------- 186 (819)
Q Consensus 127 IwDi~t~~~i~~~~~--h~-------~~I~sl~fspdg---~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~-------- 186 (819)
.+|..+++.+..++. |. .....+....+| ..++.++.+|.|+++|..+|+.+..+.....
T Consensus 287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~ 366 (677)
T 1kb0_A 287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDK 366 (677)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECT
T ss_pred EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCC
Confidence 999999999988764 21 112223333467 6789999999999999999999877653210
Q ss_pred ---Ce------------------------EEEEEeCCCCEEEEEEC----------------------------------
Q 003445 187 ---QI------------------------QCIDFHPHEFLLATGSA---------------------------------- 205 (819)
Q Consensus 187 ---~I------------------------~sl~fspdg~~Lasgs~---------------------------------- 205 (819)
++ ..++|+|++.++++...
T Consensus 367 ~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 446 (677)
T 1kb0_A 367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFF 446 (677)
T ss_dssp TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEE
T ss_pred CCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccc
Confidence 01 14688998888877643
Q ss_pred ---------CCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeecccccee-Ee
Q 003445 206 ---------DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLS-DL 274 (819)
Q Consensus 206 ---------Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i~-~l 274 (819)
.|.|..||+.+++.+...... .++....+..++..+++++.+ .+++||..+++.+..+........ .+
T Consensus 447 ~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ 525 (677)
T 1kb0_A 447 NAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPS 525 (677)
T ss_dssp CSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred ccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCE
Confidence 278999999999988776533 344555667777788877655 599999999998877765543222 22
Q ss_pred Ee-cCCCEEE
Q 003445 275 NV-HEGKLLG 283 (819)
Q Consensus 275 ~~-~dg~lLa 283 (819)
.+ .+|+.++
T Consensus 526 ~y~~~G~~~v 535 (677)
T 1kb0_A 526 TYMVDGRQYV 535 (677)
T ss_dssp EEEETTEEEE
T ss_pred EEEeCCEEEE
Confidence 22 5665443
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.07 E-value=2.4e-08 Score=111.81 Aligned_cols=220 Identities=16% Similarity=0.169 Sum_probs=157.1
Q ss_pred eCCCcEEEEEeCCCeEEEEECCCC----ceEEEec------CC-CCCeEEEEEcCCCCEEEEEECC------CeEEEEEC
Q 003445 26 RKSSRVLVTGGEDHKVNLWAIGKP----NAILSLS------GH-TSGIDSVSFDSSEVLVAAGAAS------GTIKLWDL 88 (819)
Q Consensus 26 p~~~~~Latgs~Dg~V~IWdl~~~----~~i~~l~------~h-~~~V~~l~fspdg~~Lasgs~D------G~I~IWDl 88 (819)
++...+++.|..++.|+|+|+.+. +....+. .. ......+...|+| +++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 656666777778899999998644 5666663 11 1245667888999 66666555 78999999
Q ss_pred CCCeEEEEEcCCCC---CeEEEEEecCCCEEEEEE-------------------CCCcEEEEECCCCeEEEEEecC-C-C
Q 003445 89 EEAKIVRTLTGHRS---NCISVDFHPFGEFFASGS-------------------LDTNLKIWDIRKKGCIHTYKGH-T-R 144 (819)
Q Consensus 89 ~s~~~i~~l~~h~~---~I~sl~fsp~g~~Lasgs-------------------~Dg~I~IwDi~t~~~i~~~~~h-~-~ 144 (819)
.+++.+..+..... .-..+.|+|+++.+++.. .+..|.+||+.+++.+.++... . .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99999998873322 234578899999888875 3689999999999888888752 1 2
Q ss_pred CeEEEEE--cCCCCEEEEEEC------CCeEEEEECCCCeE--EEEE--ecC----------------CCCeEEEEEeCC
Q 003445 145 GVNAIRF--TPDGRWVVSGGE------DNTVKLWDLTAGKL--LHDF--KCH----------------EGQIQCIDFHPH 196 (819)
Q Consensus 145 ~I~sl~f--spdg~~L~sgs~------Dg~I~IwDl~t~~~--i~~~--~~h----------------~~~I~sl~fspd 196 (819)
....+.| +|+++++++++. ++.|.+|....++. ...+ ... ......|.+++|
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 3445555 999999888774 56888776655532 1111 110 234678999999
Q ss_pred CCEEEEEEC-CCeEEEEECC---CCeEEEEeCCCC--------------CCeeEEEEeCCCCEEEEEE
Q 003445 197 EFLLATGSA-DRTVKFWDLE---TFELIGSAGPET--------------SGVRCLTFNPDGRTLLCGL 246 (819)
Q Consensus 197 g~~Lasgs~-Dg~I~iwDl~---~~~~l~~~~~~~--------------~~I~sl~fspdg~~Lasgs 246 (819)
|++|+++.. .+.|.+||+. +.+.+..+.... +....+.++|||++|+++.
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999988875 6799999985 245555543321 1468999999999999987
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.04 E-value=5.7e-08 Score=116.40 Aligned_cols=256 Identities=11% Similarity=0.089 Sum_probs=171.7
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCC--CCCeEEEEEcC---CCCEEEEEE------CCCeEEEEECCCCeEEEEEc
Q 003445 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGH--TSGIDSVSFDS---SEVLVAAGA------ASGTIKLWDLEEAKIVRTLT 98 (819)
Q Consensus 30 ~~Latgs~Dg~V~IWdl~~~~~i~~l~~h--~~~V~~l~fsp---dg~~Lasgs------~DG~I~IWDl~s~~~i~~l~ 98 (819)
..+++++.|+.|..+|..+++.+..+... ......+..+| ++ .+++++ .+|.|..||..+|+.+..+.
T Consensus 122 g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 122 GKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 35778888999999999999999877642 11111111122 44 444443 36899999999999887765
Q ss_pred CCC-------------------------------CCeEEEEEecCCCEEEEEECCCc-------------------EEEE
Q 003445 99 GHR-------------------------------SNCISVDFHPFGEFFASGSLDTN-------------------LKIW 128 (819)
Q Consensus 99 ~h~-------------------------------~~I~sl~fsp~g~~Lasgs~Dg~-------------------I~Iw 128 (819)
... .....+++.|++..++.++.++. |..|
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al 280 (689)
T 1yiq_A 201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV 280 (689)
T ss_dssp SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 210 01125788888889999887764 9999
Q ss_pred ECCCCeEEEEEec--CC-------CCeEEEEEcCCCC---EEEEEECCCeEEEEECCCCeEEEEEecCCC----------
Q 003445 129 DIRKKGCIHTYKG--HT-------RGVNAIRFTPDGR---WVVSGGEDNTVKLWDLTAGKLLHDFKCHEG---------- 186 (819)
Q Consensus 129 Di~t~~~i~~~~~--h~-------~~I~sl~fspdg~---~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~---------- 186 (819)
|..+++.+..++. |. ..........+|+ .++.++.+|.++++|..+|+.+........
T Consensus 281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~ 360 (689)
T 1yiq_A 281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT 360 (689)
T ss_dssp ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence 9999999988874 21 1122222223565 788899999999999999998854432110
Q ss_pred -----------------------------CeEEEEEeCCCCEEEEEEC--------------------------------
Q 003445 187 -----------------------------QIQCIDFHPHEFLLATGSA-------------------------------- 205 (819)
Q Consensus 187 -----------------------------~I~sl~fspdg~~Lasgs~-------------------------------- 205 (819)
.-..++|+|+..++++...
T Consensus 361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 440 (689)
T 1yiq_A 361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP 440 (689)
T ss_dssp TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence 0112688998877777632
Q ss_pred -------------CCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeeccccce
Q 003445 206 -------------DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRL 271 (819)
Q Consensus 206 -------------Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~s~i 271 (819)
+|.|..||+.+++.+.....+. ++....+...|.++++++.+ .++.||.++++.+-.+.......
T Consensus 441 ~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~ 519 (689)
T 1yiq_A 441 EGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVM 519 (689)
T ss_dssp SSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred cccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcc
Confidence 3789999999999988775543 23334566677788888766 59999999999887766553332
Q ss_pred -eEeE-ecCCC-EEEEEEc
Q 003445 272 -SDLN-VHEGK-LLGCSYN 287 (819)
Q Consensus 272 -~~l~-~~dg~-lLa~~~~ 287 (819)
..+. ..+|+ ++++...
T Consensus 520 ~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 520 AAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp SCCEEEEETTEEEEEEEEC
T ss_pred cCceEEEECCEEEEEEEec
Confidence 1222 25664 4444433
No 233
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.02 E-value=1.2e-08 Score=111.25 Aligned_cols=229 Identities=12% Similarity=0.100 Sum_probs=152.3
Q ss_pred CCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEEc-------CCCCCeEEEEEecCCCEEEEEEC-----CCcE
Q 003445 60 SGIDSVSFDSSEVLVAAGAA--SGTIKLWDLEEAKIVRTLT-------GHRSNCISVDFHPFGEFFASGSL-----DTNL 125 (819)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~--DG~I~IWDl~s~~~i~~l~-------~h~~~I~sl~fsp~g~~Lasgs~-----Dg~I 125 (819)
..+..++++++++++++... ++.+.||.+.+++.. .+. .+...+..+++.++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 67899999999999888642 343555555456533 221 24467899999999876665433 5789
Q ss_pred EEEECCCCeEEEEEecC------CCCeEEEEEcCCCCEEE-EEE---CCCeEEEEECCCCeEEEEEecCCCCeE-EEEEe
Q 003445 126 KIWDIRKKGCIHTYKGH------TRGVNAIRFTPDGRWVV-SGG---EDNTVKLWDLTAGKLLHDFKCHEGQIQ-CIDFH 194 (819)
Q Consensus 126 ~IwDi~t~~~i~~~~~h------~~~I~sl~fspdg~~L~-sgs---~Dg~I~IwDl~t~~~i~~~~~h~~~I~-sl~fs 194 (819)
.+||+.+++.+..+... ...+..+++++++..++ +.. .++.|.+||+.+++....+..|..... ...+.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 99999999877776532 23568999998655554 444 578999999998887766654322110 13455
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCcee----------eee
Q 003445 195 PHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCH----------DAV 264 (819)
Q Consensus 195 pdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~----------~~~ 264 (819)
++|..+.+.+.++.+..|. ..+..|+|+|||+.|+++...+-++|.++..... ..+
T Consensus 176 ~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKI 241 (343)
T ss_dssp ETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTC
T ss_pred ECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcce
Confidence 6777777777888776653 2367899999999999887665577776532100 000
Q ss_pred e--ccccceeEeEe-cCCCEEEEEEcCCeEEEEEecCCceee
Q 003445 265 D--VGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 265 ~--~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~~~~~p 303 (819)
. ........+.+ .+|.++++...++.|.+|+...+++..
T Consensus 242 ~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~ 283 (343)
T 2qe8_A 242 ERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKL 283 (343)
T ss_dssp EEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEE
T ss_pred EecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEE
Confidence 0 01111223333 678888898899999999984455443
No 234
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.01 E-value=7.3e-08 Score=115.08 Aligned_cols=271 Identities=12% Similarity=0.071 Sum_probs=180.5
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCCC----------e-EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003445 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTSG----------I-DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (819)
Q Consensus 31 ~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~----------V-~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~ 99 (819)
.+++++.++.|..+|..+++.+..+...... + ..+.+ .+..|++++.||.|..+|..+|+.+..+..
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence 4677778899999999999999888643211 0 11222 345778888999999999999999877764
Q ss_pred CCC-CeEEEEEec--CCCEEEEEEC------CCcEEEEECCCCeEEEEEecCC---C-----------------------
Q 003445 100 HRS-NCISVDFHP--FGEFFASGSL------DTNLKIWDIRKKGCIHTYKGHT---R----------------------- 144 (819)
Q Consensus 100 h~~-~I~sl~fsp--~g~~Lasgs~------Dg~I~IwDi~t~~~i~~~~~h~---~----------------------- 144 (819)
... ....+...| .+..++++.. +|.|+.||..+++.+..+.... .
T Consensus 146 ~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~ 225 (668)
T 1kv9_A 146 TDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKL 225 (668)
T ss_dssp SCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHH
T ss_pred CCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeee
Confidence 211 000000111 1345555543 5899999999999998886311 0
Q ss_pred -----CeEEEEEcCCCCEEEEEECCC-------------------eEEEEECCCCeEEEEEec--CC-------CCeEEE
Q 003445 145 -----GVNAIRFTPDGRWVVSGGEDN-------------------TVKLWDLTAGKLLHDFKC--HE-------GQIQCI 191 (819)
Q Consensus 145 -----~I~sl~fspdg~~L~sgs~Dg-------------------~I~IwDl~t~~~i~~~~~--h~-------~~I~sl 191 (819)
....+++.+++..++.++.++ .|..+|..+|+.+..+.. |. .+....
T Consensus 226 ~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~ 305 (668)
T 1kv9_A 226 GGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLA 305 (668)
T ss_dssp CEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEE
T ss_pred CCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEE
Confidence 112468888888888887776 399999999999988874 22 233333
Q ss_pred EEeCCCC---EEEEEECCCeEEEEECCCCeEEEEeCCCC------------CC------------------------eeE
Q 003445 192 DFHPHEF---LLATGSADRTVKFWDLETFELIGSAGPET------------SG------------------------VRC 232 (819)
Q Consensus 192 ~fspdg~---~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~------------~~------------------------I~s 232 (819)
.+..+|+ .++.++.+|.++++|..+|+.+....... .+ -..
T Consensus 306 d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~ 385 (668)
T 1kv9_A 306 ELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHS 385 (668)
T ss_dssp EEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSC
T ss_pred EeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCc
Confidence 4444665 78899999999999999999884432111 00 012
Q ss_pred EEEeCCCCEEEEEEC-------------------------------------CCEEEEEecCCceeeeeeccccceeEeE
Q 003445 233 LTFNPDGRTLLCGLH-------------------------------------ESLKVFSWEPIRCHDAVDVGWSRLSDLN 275 (819)
Q Consensus 233 l~fspdg~~Lasgs~-------------------------------------d~I~Vwd~~~~~~~~~~~~~~s~i~~l~ 275 (819)
++++|+...+++... +.|..||..+++..-.+...........
T Consensus 386 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~ 465 (668)
T 1kv9_A 386 MSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTL 465 (668)
T ss_dssp CEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEE
T ss_pred ceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCcee
Confidence 678888777665211 3477778777776544444332222223
Q ss_pred ecCCCEEEEEEcCCeEEEEEecCCceee
Q 003445 276 VHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 276 ~~dg~lLa~~~~Dg~V~IW~ld~~~~~p 303 (819)
...+.+++++..|+.|++||.+++++.-
T Consensus 466 ~t~gg~vf~g~~dg~l~a~d~~tG~~l~ 493 (668)
T 1kv9_A 466 STAGNLVFQGTAAGQMHAYSADKGEALW 493 (668)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EeCCCEEEEECCcccchhhhhhcChhhe
Confidence 3457778888999999999999888753
No 235
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.99 E-value=8.3e-07 Score=92.64 Aligned_cols=222 Identities=7% Similarity=-0.044 Sum_probs=148.8
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeEEE
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG-AASGTIKLWDLEEAKIVR 95 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasg-s~DG~I~IWDl~s~~~i~ 95 (819)
..+.+++|+++++.++++-..++.|..++.........+...-.....+++++++..|+.+ ...+.|.++++.......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 3567899998777777777778899999987655443343333578999999976555544 456899999987543222
Q ss_pred EEcCCCCCeEEEEEecCCCEEEEEEC---CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 003445 96 TLTGHRSNCISVDFHPFGEFFASGSL---DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLWD 171 (819)
Q Consensus 96 ~l~~h~~~I~sl~fsp~g~~Lasgs~---Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs-~Dg~I~IwD 171 (819)
...........++++|++..|..+.. .+.|..+++............-.....+++++++..|+.+. ..+.|.++|
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~ 195 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN 195 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence 23322245789999997666555554 36888888864332222222334578999999877776555 457899999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCC-CCeeEEEEeCCCC
Q 003445 172 LTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET-SGVRCLTFNPDGR 240 (819)
Q Consensus 172 l~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~-~~I~sl~fspdg~ 240 (819)
.........+.. ......+++. .+.++++....+.|..+|..+++.+..+.... .....+++.|++.
T Consensus 196 ~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 196 PAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred cCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 976544333332 3344667664 34444444456899999999999888886543 2478888888865
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.98 E-value=4.1e-07 Score=101.92 Aligned_cols=246 Identities=13% Similarity=0.142 Sum_probs=164.2
Q ss_pred eEEEEECCC-----CceEEEecC-C-CCCeEEEEE-----------c--CCCCEEEE-EECCCeEEEEECCCC----eEE
Q 003445 40 KVNLWAIGK-----PNAILSLSG-H-TSGIDSVSF-----------D--SSEVLVAA-GAASGTIKLWDLEEA----KIV 94 (819)
Q Consensus 40 ~V~IWdl~~-----~~~i~~l~~-h-~~~V~~l~f-----------s--pdg~~Las-gs~DG~I~IWDl~s~----~~i 94 (819)
.|.+.|+.. ++.+..+.- + ......+.| + .++++|++ +..++.|.++|+.+. +.+
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~ 123 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKII 123 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEE
T ss_pred eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceee
Confidence 466667654 566665541 1 123333444 6 77776655 556789999999765 677
Q ss_pred EEEc-------CCCCCeEEEEEecCCCEEEEEECC------CcEEEEECCCCeEEEEEecCC---CCeEEEEEcCCCCEE
Q 003445 95 RTLT-------GHRSNCISVDFHPFGEFFASGSLD------TNLKIWDIRKKGCIHTYKGHT---RGVNAIRFTPDGRWV 158 (819)
Q Consensus 95 ~~l~-------~h~~~I~sl~fsp~g~~Lasgs~D------g~I~IwDi~t~~~i~~~~~h~---~~I~sl~fspdg~~L 158 (819)
.++. .....-..+...|+| .++++..+ |.|.++|..+++.+.++.... ..-..+.|+|+++++
T Consensus 124 k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~m 202 (462)
T 2ece_A 124 KVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVL 202 (462)
T ss_dssp EEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEE
T ss_pred eeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEE
Confidence 7763 111234567788999 66665544 789999999999999886322 223468889999988
Q ss_pred EEEE-------------------CCCeEEEEECCCCeEEEEEecC-C-CCeEEEEE--eCCCCEEEEEE------CCCeE
Q 003445 159 VSGG-------------------EDNTVKLWDLTAGKLLHDFKCH-E-GQIQCIDF--HPHEFLLATGS------ADRTV 209 (819)
Q Consensus 159 ~sgs-------------------~Dg~I~IwDl~t~~~i~~~~~h-~-~~I~sl~f--spdg~~Lasgs------~Dg~I 209 (819)
++.. .+.+|.+||+.+++.+.++... . .....+.| +|+++++++++ .+++|
T Consensus 203 vsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V 282 (462)
T 2ece_A 203 VSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSI 282 (462)
T ss_dssp EECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEE
T ss_pred EEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceE
Confidence 8884 3689999999999888888753 1 23445655 99999888877 45688
Q ss_pred EEEECCCCeE--EEE--eCCC----------------CCCeeEEEEeCCCCEEEEEECC--CEEEEEec-C--Cceeeee
Q 003445 210 KFWDLETFEL--IGS--AGPE----------------TSGVRCLTFNPDGRTLLCGLHE--SLKVFSWE-P--IRCHDAV 264 (819)
Q Consensus 210 ~iwDl~~~~~--l~~--~~~~----------------~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~-~--~~~~~~~ 264 (819)
.+|..+.++. ... +... ......|.+++||++|+++..+ .|.+|++. + .+....+
T Consensus 283 ~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I 362 (462)
T 2ece_A 283 WLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKV 362 (462)
T ss_dssp EEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEE
T ss_pred EEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEE
Confidence 8776655432 111 1110 2457889999999999998765 69999985 2 2444445
Q ss_pred eccc---------------cceeEeEecCCCEEEEEE
Q 003445 265 DVGW---------------SRLSDLNVHEGKLLGCSY 286 (819)
Q Consensus 265 ~~~~---------------s~i~~l~~~dg~lLa~~~ 286 (819)
..+. .+-.....++|++|.++.
T Consensus 363 ~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 363 KLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp ECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 4441 122233347899988887
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.91 E-value=1.5e-07 Score=108.71 Aligned_cols=270 Identities=11% Similarity=0.101 Sum_probs=188.5
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecC---------------------------------C------CCCeEEEEEcC--
Q 003445 31 VLVTGGEDHKVNLWAIGKPNAILSLSG---------------------------------H------TSGIDSVSFDS-- 69 (819)
Q Consensus 31 ~Latgs~Dg~V~IWdl~~~~~i~~l~~---------------------------------h------~~~V~~l~fsp-- 69 (819)
.|.+|+..|.++|+-+.+++.++.+.- + .+.......+.
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~ 96 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE 96 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEET
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCC
Confidence 477889999999999988888776531 0 12222344444
Q ss_pred ---CCCEEEEEEC-CCeEEEEECCCCeEEEEEcC-CCCCeEEEEE-e-cCCCEEEEEEC------------------CCc
Q 003445 70 ---SEVLVAAGAA-SGTIKLWDLEEAKIVRTLTG-HRSNCISVDF-H-PFGEFFASGSL------------------DTN 124 (819)
Q Consensus 70 ---dg~~Lasgs~-DG~I~IWDl~s~~~i~~l~~-h~~~I~sl~f-s-p~g~~Lasgs~------------------Dg~ 124 (819)
||++++.... ++.|.+.|+.+.++...+.- .......+++ . |+++++++++. ++.
T Consensus 97 g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 97 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 7787777655 56799999999998875542 2345778888 5 89999988852 457
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC--------------------------------------e
Q 003445 125 LKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN--------------------------------------T 166 (819)
Q Consensus 125 I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg--------------------------------------~ 166 (819)
+.++|..+.+.+.++.--. .-..++++|+|+++++.+.+. .
T Consensus 177 vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 9999999999888876423 356788999999999988653 3
Q ss_pred EEEEECCC--CeE-EEEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCe------------EEEEeCCCCCCe
Q 003445 167 VKLWDLTA--GKL-LHDFKCHEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLETFE------------LIGSAGPETSGV 230 (819)
Q Consensus 167 I~IwDl~t--~~~-i~~~~~h~~~I~sl~fspdg~~Lasgs-~Dg~I~iwDl~~~~------------~l~~~~~~~~~I 230 (819)
|.+.|.++ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+ ...... -....
T Consensus 256 V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP 333 (595)
T 1fwx_A 256 VKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGP 333 (595)
T ss_dssp EEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCE
T ss_pred EEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCc
Confidence 66777776 444 444443 23456899999999877766 57899999999653 333333 34568
Q ss_pred eEEEEeCCCCEEEEEEC--CCEEEEEecC----------CceeeeeeccccceeE------eEecCCCEEEEEEcC--Ce
Q 003445 231 RCLTFNPDGRTLLCGLH--ESLKVFSWEP----------IRCHDAVDVGWSRLSD------LNVHEGKLLGCSYNQ--SC 290 (819)
Q Consensus 231 ~sl~fspdg~~Lasgs~--d~I~Vwd~~~----------~~~~~~~~~~~s~i~~------l~~~dg~lLa~~~~D--g~ 290 (819)
..++|+++| ++++... +.+.+|+++. ....+.++.++.+-.. ...+||++|+++..- ..
T Consensus 334 ~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr 412 (595)
T 1fwx_A 334 LHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDR 412 (595)
T ss_dssp EEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTS
T ss_pred ceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccc
Confidence 999999999 6666543 3599999987 4556667777654211 123789999877432 22
Q ss_pred E-----------EEEEecCCceeee
Q 003445 291 V-----------GVWVVDISRIEPY 304 (819)
Q Consensus 291 V-----------~IW~ld~~~~~p~ 304 (819)
+ .++|+..++....
T Consensus 413 ~~~~gp~~~~~~ql~dis~~~m~lv 437 (595)
T 1fwx_A 413 FLNVGPLKPENDQLIDISGDKMVLV 437 (595)
T ss_dssp SCCCCSSCCEEEEEEECSSSSCEEE
T ss_pred cccCCCCCCCcceEEEcCCCcEEEE
Confidence 3 7788866665543
No 238
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.91 E-value=1.6e-10 Score=127.88 Aligned_cols=187 Identities=15% Similarity=0.077 Sum_probs=105.7
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCC-eE-
Q 003445 70 SEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRG-VN- 147 (819)
Q Consensus 70 dg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~-I~- 147 (819)
++..|++++.||.|+.||..+|+.+..+.. ..+.+..+..++..+++++.||.|+.||..+++.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 567899999999999999999999988875 45555556667777888889999999999988877666533111 10
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCC
Q 003445 148 AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET 227 (819)
Q Consensus 148 sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~ 227 (819)
+..+. ++..+++++.++.|+.||..+|+.+..+..+. ...++|++..+++++.|+.|+.||.++++.+..+....
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 01111 34567888889999999999999988877543 23456788899999999999999999988665543211
Q ss_pred CCeeEEEEeCC----CCEEEEEECCCEEEEEecCCceeeeee
Q 003445 228 SGVRCLTFNPD----GRTLLCGLHESLKVFSWEPIRCHDAVD 265 (819)
Q Consensus 228 ~~I~sl~fspd----g~~Lasgs~d~I~Vwd~~~~~~~~~~~ 265 (819)
.....+..+ +.+++.+.++.+..||..+++..-...
T Consensus 161 --~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 161 --YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp --ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred --ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 122233332 444443334458888887776654443
No 239
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.89 E-value=3.6e-07 Score=96.17 Aligned_cols=202 Identities=9% Similarity=0.078 Sum_probs=143.0
Q ss_pred ceEEEecCCCC--CeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEEcCCC-CCeEEEEEecCCCEEEE-EECCC
Q 003445 50 NAILSLSGHTS--GIDSVSFDSSEVLVAAGAA--SGTIKLWDLEEAKIVRTLTGHR-SNCISVDFHPFGEFFAS-GSLDT 123 (819)
Q Consensus 50 ~~i~~l~~h~~--~V~~l~fspdg~~Lasgs~--DG~I~IWDl~s~~~i~~l~~h~-~~I~sl~fsp~g~~Las-gs~Dg 123 (819)
+.+.++. |.. ....+.|++++.++++.+. ++.|.++|+.+++.+..+.-.. .....+++. ++.|+. .-.++
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence 3444554 443 4689999998755555443 5899999999999998875322 223345555 445544 44578
Q ss_pred cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC-----CCeEEEEEeCCCC
Q 003445 124 NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE-----GQIQCIDFHPHEF 198 (819)
Q Consensus 124 ~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~-----~~I~sl~fspdg~ 198 (819)
.+.++|..+.+.+.++...... ...+++||+.++.+..++.|.++|..+.+.+..+.... ..++.+.|. +|.
T Consensus 87 ~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ 163 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE 163 (266)
T ss_dssp EEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence 9999999999999888633111 23355678878877778999999999998888776321 246788888 776
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEeCCC-------------CCCeeEEEEeCCCCEEEEEECC--CEEEEEecC
Q 003445 199 LLATGSADRTVKFWDLETFELIGSAGPE-------------TSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEP 257 (819)
Q Consensus 199 ~Lasgs~Dg~I~iwDl~~~~~l~~~~~~-------------~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~ 257 (819)
+++....++.|.+.|..+++.+..+... ......|+|+|+++.++++... .+.+.++.+
T Consensus 164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 5555556789999999999998887542 1356899999999988877655 355555543
No 240
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.89 E-value=2.3e-08 Score=110.59 Aligned_cols=249 Identities=10% Similarity=0.017 Sum_probs=164.4
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEe---------CCCeEEEEECCCCceEEEecCC-------CCCeEEEEEcCC
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGG---------EDHKVNLWAIGKPNAILSLSGH-------TSGIDSVSFDSS 70 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs---------~Dg~V~IWdl~~~~~i~~l~~h-------~~~V~~l~fspd 70 (819)
..+.++..-..+ .++++|++..++++.. .++.|.+||..+++.+..+... ......+.|+||
T Consensus 57 ~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpD 134 (368)
T 1mda_H 57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS 134 (368)
T ss_dssp EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCC
Confidence 344555554556 7999996665555442 3688999999999999988633 134678999999
Q ss_pred CCEEEEEEC--CCeEEE--EECCCCeEEEEEcCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCC-----CeEEEE--
Q 003445 71 EVLVAAGAA--SGTIKL--WDLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRK-----KGCIHT-- 138 (819)
Q Consensus 71 g~~Lasgs~--DG~I~I--WDl~s~~~i~~l~~h~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~t-----~~~i~~-- 138 (819)
|++++++.. +..|.+ +|+.+ +..+... + + ..+.|++ ..+++.+.||.+.+.|+.+ ++....
T Consensus 135 Gk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~-~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t 207 (368)
T 1mda_H 135 SACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-S-C--FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT 207 (368)
T ss_dssp SSCEEEEECSSSCEEEEEETTTEE---EEEEECS-S-C--CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC
T ss_pred CCEEEEEccCCCCeEEEEEEchhh---ceEEECC-C-c--eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee
Confidence 999988865 467888 89877 4444321 1 1 1223444 3455667788888889876 332211
Q ss_pred --EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEecC----------CCCeEEEEEeCCCCEEEEEE
Q 003445 139 --YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK--LLHDFKCH----------EGQIQCIDFHPHEFLLATGS 204 (819)
Q Consensus 139 --~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~--~i~~~~~h----------~~~I~sl~fspdg~~Lasgs 204 (819)
+.....+. . .+++..++..+. +.|.+.|...+. .+..+... ......+.|+|+++.++.+.
T Consensus 208 ~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~ 282 (368)
T 1mda_H 208 GAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT 282 (368)
T ss_dssp TTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred eeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEe
Confidence 11112333 3 556666666666 999999997542 23222211 01112268999998888754
Q ss_pred C---------CCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEE-EEEE--CCCEEEEEecCCceeeeeeccccc
Q 003445 205 A---------DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL-LCGL--HESLKVFSWEPIRCHDAVDVGWSR 270 (819)
Q Consensus 205 ~---------Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~L-asgs--~d~I~Vwd~~~~~~~~~~~~~~s~ 270 (819)
. ++.+.+||+.+++.+..+.... ....+.|+|||+.+ ++.. ++.+.|+|..+.+....+..+..+
T Consensus 283 ~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P 359 (368)
T 1mda_H 283 VEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359 (368)
T ss_dssp EECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCC
T ss_pred ccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCC
Confidence 3 2356799999999888775443 57899999999854 4444 457999999999988887766543
No 241
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.87 E-value=5.2e-08 Score=112.62 Aligned_cols=219 Identities=14% Similarity=0.078 Sum_probs=158.1
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCceEEEecC-CCCCeEEEEE-c-CCCCEEEEEE------------------CCCeEEE
Q 003445 27 KSSRVLVTGGEDHKVNLWAIGKPNAILSLSG-HTSGIDSVSF-D-SSEVLVAAGA------------------ASGTIKL 85 (819)
Q Consensus 27 ~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~-h~~~V~~l~f-s-pdg~~Lasgs------------------~DG~I~I 85 (819)
++..++++...++.|.+.|+.+.++...+.- ....+..+++ . |++.++++++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 4444555555667899999999998885542 2356889998 5 9999998885 2468999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCC--------------------------------------cEEE
Q 003445 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT--------------------------------------NLKI 127 (819)
Q Consensus 86 WDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg--------------------------------------~I~I 127 (819)
+|.++.+.+.++.-.. .-..++++|+|+++++.+.+. .|.+
T Consensus 180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 9999999888776322 345678999999988888553 4777
Q ss_pred EECCC--CeE-EEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCe------------EEEEEecCCCCeEEE
Q 003445 128 WDIRK--KGC-IHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLWDLTAGK------------LLHDFKCHEGQIQCI 191 (819)
Q Consensus 128 wDi~t--~~~-i~~~~~h~~~I~sl~fspdg~~L~sgs-~Dg~I~IwDl~t~~------------~i~~~~~h~~~I~sl 191 (819)
.|.++ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+ ...+... ......+
T Consensus 259 ID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~ 336 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHT 336 (595)
T ss_dssp EECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEE
T ss_pred EeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceE
Confidence 77776 444 444442 23457899999999888766 56789999998653 3444432 3457899
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCC----------CeEEEEeCCCCCCe-----eEEEEeCCCCEEEEEECC
Q 003445 192 DFHPHEFLLATGSADRTVKFWDLET----------FELIGSAGPETSGV-----RCLTFNPDGRTLLCGLHE 248 (819)
Q Consensus 192 ~fspdg~~Lasgs~Dg~I~iwDl~~----------~~~l~~~~~~~~~I-----~sl~fspdg~~Lasgs~d 248 (819)
+|+|+|....+...|++|..||+.+ .+.+..+..+-.+- ..+.++|||++|+++...
T Consensus 337 aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~ 408 (595)
T 1fwx_A 337 AFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF 408 (595)
T ss_dssp EECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred EECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence 9999995555666799999999987 56777776654321 223458999999988643
No 242
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.87 E-value=1e-05 Score=98.15 Aligned_cols=276 Identities=12% Similarity=0.084 Sum_probs=185.6
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecC-------CCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSG-------HTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~-------h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (819)
...|.++...+ ++. |..|+.++-|.+||..+++....... ....|.++...+++.+.+ |+.+ -|.+||.
T Consensus 214 ~~~i~~i~~d~-~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~ 289 (795)
T 4a2l_A 214 TKQIQAILQQS-PTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHE 289 (795)
T ss_dssp CCCEEEEEEEE-TTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEET
T ss_pred CCeeEEEEEcC-CCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcC
Confidence 45788888876 444 45555544499999876654433221 135699999998887654 4555 4899998
Q ss_pred CCCeEEEEEcC-------CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEec-------CCCCeEEEEEcCC
Q 003445 89 EEAKIVRTLTG-------HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG-------HTRGVNAIRFTPD 154 (819)
Q Consensus 89 ~s~~~i~~l~~-------h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~-------h~~~I~sl~fspd 154 (819)
.+++....... ....|.++...++|. |..|+.++-|..|+..+..... +.. ....|.++...++
T Consensus 290 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~l~~~~V~~i~~d~~ 367 (795)
T 4a2l_A 290 GTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKN-IRNIPYKNSLSDNVVSCIVEDKD 367 (795)
T ss_dssp TTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEE-ECCCTTSSSCSCSSEEEEEECTT
T ss_pred CCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceE-EcCCCCCCCCCCCeeEEEEECCC
Confidence 87765443221 235699999988776 5667777779999876554322 221 2346999999888
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEec--------CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeC--
Q 003445 155 GRWVVSGGEDNTVKLWDLTAGKLLHDFKC--------HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG-- 224 (819)
Q Consensus 155 g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~--------h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~-- 224 (819)
|. |..|+.++-|..||..+++....... ....|.++...+++.+|.+|+.++-|..||..+++......
T Consensus 368 g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~ 446 (795)
T 4a2l_A 368 KN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRN 446 (795)
T ss_dssp SC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTT
T ss_pred CC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCC
Confidence 87 56688887899999887764432211 23568999998898867778887889999998876543322
Q ss_pred --CCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeeeeec------cccceeEeEe-cCCCEEEEEEcCCeEEEEE
Q 003445 225 --PETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDV------GWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (819)
Q Consensus 225 --~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~------~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ 295 (819)
.....|.++...++|.+.+.+ .+++.+|+.++.+....... ....+..+.. .+|.+.+++. +.|..|+
T Consensus 447 ~~l~~~~v~~i~~d~~g~lwigt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~ 523 (795)
T 4a2l_A 447 SQLVNENVYAILPDGEGNLWLGT-LSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFK 523 (795)
T ss_dssp SCCSCSCEEEEEECSSSCEEEEE-SSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEE
T ss_pred CCcCCCeeEEEEECCCCCEEEEe-cCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEe
Confidence 234578999999988866655 47899999877655433211 1234555544 4566665543 5688899
Q ss_pred ecCCce
Q 003445 296 VDISRI 301 (819)
Q Consensus 296 ld~~~~ 301 (819)
.+..+.
T Consensus 524 ~~~~~~ 529 (795)
T 4a2l_A 524 QEGLDI 529 (795)
T ss_dssp EETTEE
T ss_pred CCCCeE
Confidence 887766
No 243
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.86 E-value=7.6e-07 Score=104.64 Aligned_cols=271 Identities=9% Similarity=0.043 Sum_probs=174.0
Q ss_pred EEEEEeC-CCeEEEEEC-CCCceEEEecCCCCC-----------eEEEEEcCCCCE----EEEEECCCeEEEEECCCCeE
Q 003445 31 VLVTGGE-DHKVNLWAI-GKPNAILSLSGHTSG-----------IDSVSFDSSEVL----VAAGAASGTIKLWDLEEAKI 93 (819)
Q Consensus 31 ~Latgs~-Dg~V~IWdl-~~~~~i~~l~~h~~~-----------V~~l~fspdg~~----Lasgs~DG~I~IWDl~s~~~ 93 (819)
.+++++. ++.|.-+|. .+++.+..+...... ...+++.|.+.. |++++.|+.|..+|..+|+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 4666666 899999999 899999887643210 123455433333 77888999999999999998
Q ss_pred EEEEcCCCC----CeEE-EEEecCCCEEEEEE------CCCcEEEEECCCCeEEEEEecCCCC-----------------
Q 003445 94 VRTLTGHRS----NCIS-VDFHPFGEFFASGS------LDTNLKIWDIRKKGCIHTYKGHTRG----------------- 145 (819)
Q Consensus 94 i~~l~~h~~----~I~s-l~fsp~g~~Lasgs------~Dg~I~IwDi~t~~~i~~~~~h~~~----------------- 145 (819)
+-....... .+.+ -... + ..+++++ .+|.|+.+|..+++.+..+......
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 876653220 1111 1111 3 3555554 3799999999999999887643211
Q ss_pred --------------------e-EEEEEcCCCCEEEEEECC----------------CeEEEEECCCCeEEEEEecCCC--
Q 003445 146 --------------------V-NAIRFTPDGRWVVSGGED----------------NTVKLWDLTAGKLLHDFKCHEG-- 186 (819)
Q Consensus 146 --------------------I-~sl~fspdg~~L~sgs~D----------------g~I~IwDl~t~~~i~~~~~h~~-- 186 (819)
+ ..+++.++...++.+..+ +.|..+|..+|+.+..++....
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 0 134666777788877665 3899999999999988874221
Q ss_pred -------CeEEEEEe-CCC---CEEEEEECCCeEEEEECCCCeEEEEeCCCC-------------CCe------------
Q 003445 187 -------QIQCIDFH-PHE---FLLATGSADRTVKFWDLETFELIGSAGPET-------------SGV------------ 230 (819)
Q Consensus 187 -------~I~sl~fs-pdg---~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~-------------~~I------------ 230 (819)
...-+... .+| ..++.++.+|.++++|.++|+.+....... .++
T Consensus 302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~ 381 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHL 381 (599)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCC
T ss_pred ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCC
Confidence 11112222 567 578888999999999999999887653211 011
Q ss_pred --------------eEEEEeCCCCEEEEEEC----------------------------------------CCEEEEEec
Q 003445 231 --------------RCLTFNPDGRTLLCGLH----------------------------------------ESLKVFSWE 256 (819)
Q Consensus 231 --------------~sl~fspdg~~Lasgs~----------------------------------------d~I~Vwd~~ 256 (819)
..++|+|+..++++... +.+..||..
T Consensus 382 ~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~ 461 (599)
T 1w6s_A 382 AKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAI 461 (599)
T ss_dssp EEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTT
T ss_pred ccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECC
Confidence 24677887777665421 235555555
Q ss_pred CCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEEecCCceee
Q 003445 257 PIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 257 ~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~p 303 (819)
+++..-................+.+++.+..|+.++.||.++++..-
T Consensus 462 tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW 508 (599)
T 1w6s_A 462 TGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW 508 (599)
T ss_dssp TCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEE
Confidence 55544333322221222122356667778899999999999998764
No 244
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.85 E-value=1.1e-06 Score=102.94 Aligned_cols=270 Identities=11% Similarity=0.076 Sum_probs=174.4
Q ss_pred EEEEEeC-CCeEEEEEC-CCCceEEEecCCCC-Ce----------EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003445 31 VLVTGGE-DHKVNLWAI-GKPNAILSLSGHTS-GI----------DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL 97 (819)
Q Consensus 31 ~Latgs~-Dg~V~IWdl-~~~~~i~~l~~h~~-~V----------~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l 97 (819)
.+++++. ++.|..+|. .+++.+..+..... .+ ..+++ .+..|++++.|+.|..+|..+|+.+..+
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 141 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWEV 141 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEEe
Confidence 4556666 899999999 89999988763221 00 11222 3557788888999999999999988766
Q ss_pred cCCCC----CeEE-EEEecCCCEEEEEEC------CCcEEEEECCCCeEEEEEecCCCC---------------------
Q 003445 98 TGHRS----NCIS-VDFHPFGEFFASGSL------DTNLKIWDIRKKGCIHTYKGHTRG--------------------- 145 (819)
Q Consensus 98 ~~h~~----~I~s-l~fsp~g~~Lasgs~------Dg~I~IwDi~t~~~i~~~~~h~~~--------------------- 145 (819)
..... .+.+ ... .+..+++++. +|.|+.+|..+++.+.++......
T Consensus 142 ~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~ 219 (571)
T 2ad6_A 142 EVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGL 219 (571)
T ss_dssp ECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSH
T ss_pred cCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccccc
Confidence 53210 1111 111 1345566554 799999999999999887642210
Q ss_pred -----------------eEEEEEcCCCCEEEEEECC----------------CeEEEEECCCCeEEEEEecC--C-----
Q 003445 146 -----------------VNAIRFTPDGRWVVSGGED----------------NTVKLWDLTAGKLLHDFKCH--E----- 185 (819)
Q Consensus 146 -----------------I~sl~fspdg~~L~sgs~D----------------g~I~IwDl~t~~~i~~~~~h--~----- 185 (819)
...+++.++...++.+..+ +.|..+|..+|+.+..++.. .
T Consensus 220 g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~ 299 (571)
T 2ad6_A 220 GTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFA 299 (571)
T ss_dssp HHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCC
T ss_pred ccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccc
Confidence 0235667766677766532 36999999999998887632 1
Q ss_pred --CCeEEEEEeCCCC---EEEEEECCCeEEEEECCCCeEEEEeCCCC-------------CCe-----------------
Q 003445 186 --GQIQCIDFHPHEF---LLATGSADRTVKFWDLETFELIGSAGPET-------------SGV----------------- 230 (819)
Q Consensus 186 --~~I~sl~fspdg~---~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~-------------~~I----------------- 230 (819)
....-+....+|+ +++.++.+|.++++|..+|+.+....... .++
T Consensus 300 ~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~ 379 (571)
T 2ad6_A 300 GVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNIC 379 (571)
T ss_dssp CCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEES
T ss_pred cCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEEC
Confidence 1111223334674 67888899999999999999887653221 111
Q ss_pred ---------eEEEEeCCCCEEEEEEC--------------------------------------CCEEEEEecCCceeee
Q 003445 231 ---------RCLTFNPDGRTLLCGLH--------------------------------------ESLKVFSWEPIRCHDA 263 (819)
Q Consensus 231 ---------~sl~fspdg~~Lasgs~--------------------------------------d~I~Vwd~~~~~~~~~ 263 (819)
..++|+|+..++++... +.+..||..+++..-.
T Consensus 380 P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~ 459 (571)
T 2ad6_A 380 PSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWT 459 (571)
T ss_dssp SCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEE
T ss_pred CCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEE
Confidence 24678888777776542 2366666666665544
Q ss_pred eeccccceeEeEecCCCEEEEEEcCCeEEEEEecCCceeee
Q 003445 264 VDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEPY 304 (819)
Q Consensus 264 ~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~p~ 304 (819)
+..............+.++.++..|+.|++||..+++..--
T Consensus 460 ~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~ 500 (571)
T 2ad6_A 460 KWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN 500 (571)
T ss_dssp EEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEE
Confidence 43332222222223456667788999999999999887643
No 245
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.84 E-value=2.7e-06 Score=88.77 Aligned_cols=229 Identities=10% Similarity=-0.039 Sum_probs=142.9
Q ss_pred CEEEEEECCCeEEEEECCCCeE-----EEEEcCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCeEEEEEecCCCC
Q 003445 72 VLVAAGAASGTIKLWDLEEAKI-----VRTLTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRKKGCIHTYKGHTRG 145 (819)
Q Consensus 72 ~~Lasgs~DG~I~IWDl~s~~~-----i~~l~~h~~~I~sl~fsp~g~~Lasgs-~Dg~I~IwDi~t~~~i~~~~~h~~~ 145 (819)
.+|+.+. .+.|+.+++..... ...+.........++|++++..|+.+. .++.|..++.........+......
T Consensus 2 ~~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 3455544 35788888875432 111221223567899999766655554 5689999999866544333333356
Q ss_pred eEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC---CCeEEEEECCCCeEEE
Q 003445 146 VNAIRFTPDGRWVVSGG-EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA---DRTVKFWDLETFELIG 221 (819)
Q Consensus 146 I~sl~fspdg~~L~sgs-~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~---Dg~I~iwDl~~~~~l~ 221 (819)
...+++++++..|+.+. ..+.|.++|+..................++++|++..|+.+.. .+.|..+++.......
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~ 160 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI 160 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE
Confidence 78999999766565554 5678999998754322222222246789999997665555553 3688888886433221
Q ss_pred EeCCCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEEecCC
Q 003445 222 SAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDIS 299 (819)
Q Consensus 222 ~~~~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~ 299 (819)
...........+++++++..|+++... .|.+++.+.......+.....+ ..+...++.++++....+.|.+++.+++
T Consensus 161 ~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P-~gi~~d~~~lyva~~~~~~v~~~d~~~g 239 (267)
T 1npe_A 161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYP-FAVTSYGKNLYYTDWKTNSVIAMDLAIS 239 (267)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSE-EEEEEETTEEEEEETTTTEEEEEETTTT
T ss_pred EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCc-eEEEEeCCEEEEEECCCCeEEEEeCCCC
Confidence 222233467899999998888877654 4778877654433333322222 3445555566666667789999998876
Q ss_pred cee
Q 003445 300 RIE 302 (819)
Q Consensus 300 ~~~ 302 (819)
+..
T Consensus 240 ~~~ 242 (267)
T 1npe_A 240 KEM 242 (267)
T ss_dssp EEE
T ss_pred Cce
Confidence 654
No 246
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.83 E-value=6e-07 Score=93.79 Aligned_cols=198 Identities=11% Similarity=0.166 Sum_probs=140.5
Q ss_pred eEEEecCCCC--CeEEEEEcCCCCEEEEEECCC--eEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEE-CCCcE
Q 003445 51 AILSLSGHTS--GIDSVSFDSSEVLVAAGAASG--TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS-LDTNL 125 (819)
Q Consensus 51 ~i~~l~~h~~--~V~~l~fspdg~~Lasgs~DG--~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs-~Dg~I 125 (819)
.+.++. |.. ....+.|+ ++.++.+.+.+| .|+++|+.+++.+..+.... ........++++.|.... .++.+
T Consensus 33 vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 33 IVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEE
Confidence 444553 544 34789998 677777777766 99999999999998886433 333322333355555544 58899
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecC--C---CCeEEEEEeCCCCEE
Q 003445 126 KIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH--E---GQIQCIDFHPHEFLL 200 (819)
Q Consensus 126 ~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h--~---~~I~sl~fspdg~~L 200 (819)
.+||..+.+.+.++...... ..++ +|+..|+.+..++.|.++|..+.+.+..+... . ..++.+.|. +|.+.
T Consensus 110 ~v~D~~t~~~~~ti~~~~eG-~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ly 185 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDGEG-WGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIF 185 (262)
T ss_dssp EEEETTTCCEEEEEECSSCC-CCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEECccCcEEEEEECCCCc-eEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEE
Confidence 99999999999998753322 3344 56777777766788999999999988877642 1 335668886 77666
Q ss_pred EEEECCCeEEEEECCCCeEEEEeCCC------------CCCeeEEEEeCCCCEEEEEECCCEEEEEe
Q 003445 201 ATGSADRTVKFWDLETFELIGSAGPE------------TSGVRCLTFNPDGRTLLCGLHESLKVFSW 255 (819)
Q Consensus 201 asgs~Dg~I~iwDl~~~~~l~~~~~~------------~~~I~sl~fspdg~~Lasgs~d~I~Vwd~ 255 (819)
+..-.++.|.+.|.++++.+..+... ....+.|+|+|+++.|++.+..--++|.+
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev 252 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEI 252 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEE
Confidence 55556889999999999998876542 23568999999998888877664344443
No 247
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.82 E-value=1.6e-05 Score=96.58 Aligned_cols=278 Identities=12% Similarity=0.097 Sum_probs=185.5
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecC-------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSG-------HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~-------h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (819)
..|.++...+ ++. |..|..+| |.+|+..++........ ....|.++...++|.+. .|+.++-|..|+..
T Consensus 263 ~~i~~i~~d~-~g~-lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 263 NYIRSLAMDS-QNR-LWIGTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPI 338 (795)
T ss_dssp SBEEEEEECT-TSC-EEEEESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGG
T ss_pred CeEEEEEEcC-CCC-EEEEeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCC
Confidence 5699998886 444 55566664 89999876654433211 23579999999988754 56777779999876
Q ss_pred CCeEEEEEc-----C-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEec--------CCCCeEEEEEcCCC
Q 003445 90 EAKIVRTLT-----G-HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG--------HTRGVNAIRFTPDG 155 (819)
Q Consensus 90 s~~~i~~l~-----~-h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~--------h~~~I~sl~fspdg 155 (819)
++....... + ....|.++...++|. |..|+.++-|..||..++........ ....|.++...++|
T Consensus 339 ~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g 417 (795)
T 4a2l_A 339 RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK 417 (795)
T ss_dssp GGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT
T ss_pred cccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC
Confidence 554322111 0 234689998888776 55677777799999887765433211 23568999998888
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEe----cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeC------C
Q 003445 156 RWVVSGGEDNTVKLWDLTAGKLLHDFK----CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG------P 225 (819)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~~i~~~~----~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~------~ 225 (819)
+.|..|+.++-|.+||..+++...... .....|.++...++|.+.+.. .+ -|.+||..+++...... .
T Consensus 418 ~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~ 495 (795)
T 4a2l_A 418 SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPV 495 (795)
T ss_dssp TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBC
T ss_pred CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEcccccccccc
Confidence 867778888889999998876443221 124578999988888755544 44 58899998876543221 1
Q ss_pred CCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeeee------eccccceeEeEe-cCCCEEEEEEcCCeEEEEEecC
Q 003445 226 ETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAV------DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 226 ~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~------~~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~ 298 (819)
....|.++...++|.+.+.+. +++..|+.++.+. ... ......+..+.. .+|.+.+++ .. .|..|+.+.
T Consensus 496 ~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~ 571 (795)
T 4a2l_A 496 VSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKD 571 (795)
T ss_dssp CCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTT
T ss_pred CCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCC
Confidence 235789999999998777654 8899999877665 211 012233455554 456665544 33 688888888
Q ss_pred Cceeeee
Q 003445 299 SRIEPYT 305 (819)
Q Consensus 299 ~~~~p~~ 305 (819)
.++..|.
T Consensus 572 ~~~~~~~ 578 (795)
T 4a2l_A 572 KQIKRYN 578 (795)
T ss_dssp TEEEEEC
T ss_pred CcEEEeC
Confidence 8777654
No 248
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.75 E-value=2.2e-06 Score=90.26 Aligned_cols=199 Identities=11% Similarity=0.021 Sum_probs=141.3
Q ss_pred ccCCC--EEEEEEeeCCCcEEEEEeC--CCeEEEEECCCCceEEEecCCC-CCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003445 14 AHSST--VNCLKIGRKSSRVLVTGGE--DHKVNLWAIGKPNAILSLSGHT-SGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (819)
Q Consensus 14 ~H~~~--V~~lafsp~~~~~Latgs~--Dg~V~IWdl~~~~~i~~l~~h~-~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (819)
.|... ...++|+++ +.++++.+. ++.|.++|+.+++.+..+.-.. .....+++.. +++.++.-.++.+.++|.
T Consensus 16 p~~~~~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~ 93 (266)
T 2iwa_A 16 PHDPYAFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDR 93 (266)
T ss_dssp ECCTTCCEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEET
T ss_pred ECCCCCCcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEEC
Confidence 56643 689999985 565555543 5799999999999998876322 2334566652 234444456899999999
Q ss_pred CCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-----CCeEEEEEcCCCCEEEEEEC
Q 003445 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT-----RGVNAIRFTPDGRWVVSGGE 163 (819)
Q Consensus 89 ~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~-----~~I~sl~fspdg~~L~sgs~ 163 (819)
.+.+.+.++......- ..++++|+.++++..++.|.++|..+.+.+..+.-.. ...+.+.|. +|..++....
T Consensus 94 ~t~~v~~~i~~g~~~g--~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~ 170 (266)
T 2iwa_A 94 RTLSNIKNFTHQMKDG--WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ 170 (266)
T ss_dssp TTTEEEEEEECCSSSC--CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred CCCcEEEEEECCCCCe--EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC
Confidence 9999999886331222 3355678777777778999999999998887776321 236788888 6754444446
Q ss_pred CCeEEEEECCCCeEEEEEecC-------------CCCeEEEEEeCCCC-EEEEEECCCeEEEEECCCC
Q 003445 164 DNTVKLWDLTAGKLLHDFKCH-------------EGQIQCIDFHPHEF-LLATGSADRTVKFWDLETF 217 (819)
Q Consensus 164 Dg~I~IwDl~t~~~i~~~~~h-------------~~~I~sl~fspdg~-~Lasgs~Dg~I~iwDl~~~ 217 (819)
++.|.+.|..+++.+..+... ....+.|+|+|+++ +++++...+.|...++...
T Consensus 171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 789999999999999888632 13568999999976 5555556788888887653
No 249
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.72 E-value=5.3e-06 Score=89.10 Aligned_cols=233 Identities=10% Similarity=0.058 Sum_probs=147.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCC-------------------CCCeEEEEEecCCCEEEEEE
Q 003445 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGH-------------------RSNCISVDFHPFGEFFASGS 120 (819)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h-------------------~~~I~sl~fsp~g~~Lasgs 120 (819)
....+++|++++++++++..++.|..||..+++........ ......+++.+++..|+++.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 35678899999987888888999999998876543221100 12478899998334555555
Q ss_pred CCCcEEEEECCCCeEEEEEec-----CCCCeEEEEEcC-CCCEEEEEEC-----------------CCeEEEEECCCCeE
Q 003445 121 LDTNLKIWDIRKKGCIHTYKG-----HTRGVNAIRFTP-DGRWVVSGGE-----------------DNTVKLWDLTAGKL 177 (819)
Q Consensus 121 ~Dg~I~IwDi~t~~~i~~~~~-----h~~~I~sl~fsp-dg~~L~sgs~-----------------Dg~I~IwDl~t~~~ 177 (819)
..+.|..+|..++.. ..+.. .......+++.+ +|+..++-.. +|.|..||..+++.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 556688999775532 22211 123468899999 9986665432 36799999887765
Q ss_pred EEEEecCCCCeEEEEEeCCCCEEEEE-ECCCeEEEEECCCC---e--EEEEeCCCCCCeeEEEEeCCCCEEEEEEC----
Q 003445 178 LHDFKCHEGQIQCIDFHPHEFLLATG-SADRTVKFWDLETF---E--LIGSAGPETSGVRCLTFNPDGRTLLCGLH---- 247 (819)
Q Consensus 178 i~~~~~h~~~I~sl~fspdg~~Lasg-s~Dg~I~iwDl~~~---~--~l~~~~~~~~~I~sl~fspdg~~Lasgs~---- 247 (819)
...... ......++|+|++++|+.+ ..++.|..|++... . .+.. ..+ ...++++++|+++++...
T Consensus 178 ~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~gi~~d~~G~l~va~~~~~~~ 252 (322)
T 2fp8_A 178 TLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PGNIKRNADGHFWVSSSEELDG 252 (322)
T ss_dssp EEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred EEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CCCeEECCCCCEEEEecCcccc
Confidence 433222 2334679999999866655 45689999998742 2 2222 223 788999999987766543
Q ss_pred ----C-CEEEEEecC-Cceeeeeecc----ccceeEeEecCCCEEEEEEcCCeEEEEEecC
Q 003445 248 ----E-SLKVFSWEP-IRCHDAVDVG----WSRLSDLNVHEGKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 248 ----d-~I~Vwd~~~-~~~~~~~~~~----~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~ 298 (819)
. .-.|+-+++ ++....+... ......+...++.+++++...+.|.+++++.
T Consensus 253 ~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 253 NMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp STTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC--
T ss_pred cccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEeccc
Confidence 1 223444443 3444444332 2334445556777777777788888887653
No 250
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.71 E-value=6.3e-06 Score=96.66 Aligned_cols=272 Identities=9% Similarity=0.010 Sum_probs=170.3
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCe---------EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc
Q 003445 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGI---------DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT 98 (819)
Q Consensus 28 ~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V---------~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~ 98 (819)
++. +++++.++.|..+|..+++.+..+....... ..+++ .+..|+.++.++.|..+|..+|+.+-...
T Consensus 68 ~g~-vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 68 DGV-IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp TTE-EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred CCE-EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence 444 4555554459999999999998876432210 11222 34577788899999999999999887765
Q ss_pred CCCC----CeE-EEEEec---CCC-EEEEEE------CCCcEEEEECCCCeEEEEEecCCCCe-----------------
Q 003445 99 GHRS----NCI-SVDFHP---FGE-FFASGS------LDTNLKIWDIRKKGCIHTYKGHTRGV----------------- 146 (819)
Q Consensus 99 ~h~~----~I~-sl~fsp---~g~-~Lasgs------~Dg~I~IwDi~t~~~i~~~~~h~~~I----------------- 146 (819)
.... .+. .-.... +++ .+++++ .+|.|+.+|..+++.+.........+
T Consensus 145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~ 224 (582)
T 1flg_A 145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP 224 (582)
T ss_dssp CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccc
Confidence 3321 111 111111 123 566654 37899999999999888764321000
Q ss_pred ------------------------EEEEEcCCCCEEEEEEC--------------------C----CeEEEEECCCCeEE
Q 003445 147 ------------------------NAIRFTPDGRWVVSGGE--------------------D----NTVKLWDLTAGKLL 178 (819)
Q Consensus 147 ------------------------~sl~fspdg~~L~sgs~--------------------D----g~I~IwDl~t~~~i 178 (819)
..+++.|+...++.+.. | +.|..+|..+|+.+
T Consensus 225 ~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~ 304 (582)
T 1flg_A 225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVK 304 (582)
T ss_dssp TSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEE
T ss_pred cCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEE
Confidence 13466677777777663 2 68999999999999
Q ss_pred EEEec--CC--------CCeEEEEEe-CCC---CEEEEEECCCeEEEEECCCCeEEEEeCCCC-------------CC--
Q 003445 179 HDFKC--HE--------GQIQCIDFH-PHE---FLLATGSADRTVKFWDLETFELIGSAGPET-------------SG-- 229 (819)
Q Consensus 179 ~~~~~--h~--------~~I~sl~fs-pdg---~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~-------------~~-- 229 (819)
..++. |. .++ -+... .+| .+++.++.+|.++++|.++|+.+..+.... .+
T Consensus 305 W~~q~~~~d~wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~ 383 (582)
T 1flg_A 305 WFYQHTPNDAWDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVE 383 (582)
T ss_dssp EEEESSTTCCSCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEE
T ss_pred EEEeCCCCCcccccCCCCcE-EEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeE
Confidence 88764 22 112 12222 467 378889999999999999999886653321 00
Q ss_pred ------------------------------eeEEEEeCCCCEEEEEEC--------------------------------
Q 003445 230 ------------------------------VRCLTFNPDGRTLLCGLH-------------------------------- 247 (819)
Q Consensus 230 ------------------------------I~sl~fspdg~~Lasgs~-------------------------------- 247 (819)
-..++++|+...+++...
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~ 463 (582)
T 1flg_A 384 REGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDD 463 (582)
T ss_dssp CTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSS
T ss_pred ccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCC
Confidence 013466776555554321
Q ss_pred --CCEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEEecCCceee
Q 003445 248 --ESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 248 --d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~p 303 (819)
+.|..||..+++..-................+.+++.+..|+.++.||.++++..-
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW 521 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELW 521 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEE
Confidence 23666666666654433333222221222345677778899999999999988764
No 251
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.67 E-value=8.6e-06 Score=87.41 Aligned_cols=239 Identities=12% Similarity=0.051 Sum_probs=149.6
Q ss_pred EeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec-C------------------CCCCeEEEEEcC-CC
Q 003445 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS-G------------------HTSGIDSVSFDS-SE 71 (819)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~-~------------------h~~~V~~l~fsp-dg 71 (819)
+.+.-....+++|.+ ++++++++..++.|..|+...+....... . ....+..+++.+ ++
T Consensus 14 ~~g~~~~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp EECSSSCCCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred cCCccCCceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 344334567889998 56667788889999999976554332111 0 013578999997 55
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEc----C-CCCCeEEEEEec-CCCEEEEEEC-----------------CCcEEEE
Q 003445 72 VLVAAGAASGTIKLWDLEEAKIVRTLT----G-HRSNCISVDFHP-FGEFFASGSL-----------------DTNLKIW 128 (819)
Q Consensus 72 ~~Lasgs~DG~I~IWDl~s~~~i~~l~----~-h~~~I~sl~fsp-~g~~Lasgs~-----------------Dg~I~Iw 128 (819)
+ |+.+...+.|..+|..+++. ..+. + .......+++.+ +|+++++-.. ++.|..|
T Consensus 93 ~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 93 Q-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp E-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred c-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence 5 44555556688898776542 2221 1 113467899999 8886665432 3679999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCe--EEEEEecCCCCeEEEEEeCCCCEEEEEEC
Q 003445 129 DIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSG-GEDNTVKLWDLTAGK--LLHDFKCHEGQIQCIDFHPHEFLLATGSA 205 (819)
Q Consensus 129 Di~t~~~i~~~~~h~~~I~sl~fspdg~~L~sg-s~Dg~I~IwDl~t~~--~i~~~~~h~~~I~sl~fspdg~~Lasgs~ 205 (819)
|..+++....... ......++|+++|++|+.+ ...+.|.+||+.... ....+....+ ...+++.++|++.++...
T Consensus 171 d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 171 DPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp ETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred eCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence 9877764333222 2335679999999977666 456899999987421 1112211233 788999999987766544
Q ss_pred ----------CCeEEEEECCCCeEEEEeCCC----CCCeeEEEEeCCCCEEEEEE-CCCEEEEEecC
Q 003445 206 ----------DRTVKFWDLETFELIGSAGPE----TSGVRCLTFNPDGRTLLCGL-HESLKVFSWEP 257 (819)
Q Consensus 206 ----------Dg~I~iwDl~~~~~l~~~~~~----~~~I~sl~fspdg~~Lasgs-~d~I~Vwd~~~ 257 (819)
.+.|..+|.. ++.+..+... ...+..+++. +|.+++++. .+.|.+|+++.
T Consensus 249 ~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp ETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC--
T ss_pred cccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEeccc
Confidence 4678888874 7766666433 2346777763 554444432 33577777653
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.66 E-value=5.1e-06 Score=99.09 Aligned_cols=236 Identities=14% Similarity=0.139 Sum_probs=159.0
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCC-CeEEEEEcC--CCCEEEEEEC------CCeEEEEECCCCeEEEEEcCCC
Q 003445 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTS-GIDSVSFDS--SEVLVAAGAA------SGTIKLWDLEEAKIVRTLTGHR 101 (819)
Q Consensus 31 ~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~-~V~~l~fsp--dg~~Lasgs~------DG~I~IWDl~s~~~i~~l~~h~ 101 (819)
.+++++.|+.|..+|..+++.+..+..... ....+...| .+..++++.. +|.|..||..+|+.+..+....
T Consensus 119 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~ 198 (668)
T 1kv9_A 119 KVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVP 198 (668)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSC
T ss_pred EEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccC
Confidence 577788899999999999999988764211 000011111 1334555543 5899999999999987775210
Q ss_pred ---C----------------------------CeEEEEEecCCCEEEEEECCC-------------------cEEEEECC
Q 003445 102 ---S----------------------------NCISVDFHPFGEFFASGSLDT-------------------NLKIWDIR 131 (819)
Q Consensus 102 ---~----------------------------~I~sl~fsp~g~~Lasgs~Dg-------------------~I~IwDi~ 131 (819)
. ....+++.|....++.++.++ .|..+|..
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~ 278 (668)
T 1kv9_A 199 GDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD 278 (668)
T ss_dssp CCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT
T ss_pred CCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCC
Confidence 0 112467888888888887766 39999999
Q ss_pred CCeEEEEEec--CC-------CCeEEEEEcCCCC---EEEEEECCCeEEEEECCCCeEEEEEecCC-----------C-C
Q 003445 132 KKGCIHTYKG--HT-------RGVNAIRFTPDGR---WVVSGGEDNTVKLWDLTAGKLLHDFKCHE-----------G-Q 187 (819)
Q Consensus 132 t~~~i~~~~~--h~-------~~I~sl~fspdg~---~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~-----------~-~ 187 (819)
+++.+..++. |. .+.....+..+|+ .++.++.+|.++++|..+|+.+....... + +
T Consensus 279 tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p 358 (668)
T 1kv9_A 279 TGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRP 358 (668)
T ss_dssp TCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCE
T ss_pred CCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCc
Confidence 9999988874 22 2222233333665 68889999999999999999885443211 0 0
Q ss_pred e------------------------EEEEEeCCCCEEEEEE------------------------------------CCC
Q 003445 188 I------------------------QCIDFHPHEFLLATGS------------------------------------ADR 207 (819)
Q Consensus 188 I------------------------~sl~fspdg~~Lasgs------------------------------------~Dg 207 (819)
+ ..++++|+..++++.. .+|
T Consensus 359 ~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g 438 (668)
T 1kv9_A 359 VEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSG 438 (668)
T ss_dssp EECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEE
T ss_pred cccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccc
Confidence 0 1267888766655421 247
Q ss_pred eEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeecc
Q 003445 208 TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVG 267 (819)
Q Consensus 208 ~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~ 267 (819)
.|..||+.+++.+....... +.....+...|.++++++.+ .+++||.++++.+..+...
T Consensus 439 ~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 439 ALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp EEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred eEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 89999999999887765432 23334455567788888655 5999999998887766554
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.66 E-value=4.3e-06 Score=87.26 Aligned_cols=190 Identities=11% Similarity=0.090 Sum_probs=134.4
Q ss_pred eEEEEeccCCCE--EEEEEeeCCCcEEEEEeCCC--eEEEEECCCCceEEEecCCCCC-eEEEEEcCCCCEEEE-EECCC
Q 003445 8 KLQEFVAHSSTV--NCLKIGRKSSRVLVTGGEDH--KVNLWAIGKPNAILSLSGHTSG-IDSVSFDSSEVLVAA-GAASG 81 (819)
Q Consensus 8 kl~~~~~H~~~V--~~lafsp~~~~~Latgs~Dg--~V~IWdl~~~~~i~~l~~h~~~-V~~l~fspdg~~Las-gs~DG 81 (819)
++..-..|...- ..+.|+ ++.++.+.+.+| .|+++|+.+++.+..+...... -..+++. +..|+. .-.++
T Consensus 32 ~vv~~~phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSS
T ss_pred EEEEEecCCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCC
Confidence 343333676554 789998 457777777766 8999999999999888743322 1334543 444444 34589
Q ss_pred eEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecC--C---CCeEEEEEcCCCC
Q 003445 82 TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH--T---RGVNAIRFTPDGR 156 (819)
Q Consensus 82 ~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h--~---~~I~sl~fspdg~ 156 (819)
.+.+||..+.+.+.++.... .-..++ +++..|+.+..++.|.++|..+.+.+.++... . ..++.+.|. +|+
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ 183 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE 183 (262)
T ss_dssp EEEEEETTTCCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECccCcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE
Confidence 99999999999999987533 223344 56777777666788999999999988877542 1 335567776 676
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEecC------------CCCeEEEEEeCCCCEEEEEEC
Q 003445 157 WVVSGGEDNTVKLWDLTAGKLLHDFKCH------------EGQIQCIDFHPHEFLLATGSA 205 (819)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t~~~i~~~~~h------------~~~I~sl~fspdg~~Lasgs~ 205 (819)
..+..-.++.|.+.|..+++.+..+... ....+.|+|+|+++.|++.+.
T Consensus 184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 184 IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 5544446889999999999999888742 134689999998877777664
No 254
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.64 E-value=3.2e-06 Score=88.37 Aligned_cols=196 Identities=12% Similarity=0.060 Sum_probs=138.2
Q ss_pred ceEEEecCCCC--CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCe--EEEEEecCCCEEEEEECCCcE
Q 003445 50 NAILSLSGHTS--GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNC--ISVDFHPFGEFFASGSLDTNL 125 (819)
Q Consensus 50 ~~i~~l~~h~~--~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I--~sl~fsp~g~~Lasgs~Dg~I 125 (819)
+.+.++. |.. ....+.|+ ++.++++.+.+|.|+++|+++++.+..+ - .... ..+++.. +..++..-.++.+
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEE
T ss_pred EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEE
Confidence 3444553 443 45789997 4667777788899999999999988777 2 2233 3355542 2344445568999
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC-----CCeEEEEEeCCCCEE
Q 003445 126 KIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE-----GQIQCIDFHPHEFLL 200 (819)
Q Consensus 126 ~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~-----~~I~sl~fspdg~~L 200 (819)
.+||..+.+.+.++..... -+.++ +|++.|+.+..++.|.++|..+.+.+..+.... ..++.+.|. +|.+.
T Consensus 119 ~V~D~~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly 194 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIY 194 (268)
T ss_dssp EEEETTTTEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEECCcCcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEE
Confidence 9999999999999875322 23444 467888888778999999999999888776422 245778887 77655
Q ss_pred EEEECCCeEEEEECCCCeEEEEeCCC-------------CCCeeEEEEeCCCCEEEEEECCCEEEEE
Q 003445 201 ATGSADRTVKFWDLETFELIGSAGPE-------------TSGVRCLTFNPDGRTLLCGLHESLKVFS 254 (819)
Q Consensus 201 asgs~Dg~I~iwDl~~~~~l~~~~~~-------------~~~I~sl~fspdg~~Lasgs~d~I~Vwd 254 (819)
+..-.+..|.+.|.++++.+..+... ..-.+.|+|+|+++.|++.+..--++|.
T Consensus 195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~e 261 (268)
T 3nok_A 195 ANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFE 261 (268)
T ss_dssp EEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEE
T ss_pred EEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEE
Confidence 55556889999999999988876432 2356899999987777766554333443
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.62 E-value=8.5e-06 Score=95.32 Aligned_cols=235 Identities=12% Similarity=0.067 Sum_probs=154.7
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCCC--C--CeEE-EEEcCCCCEEEEEEC------CCeEEEEECCCCeEEEEEc
Q 003445 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHT--S--GIDS-VSFDSSEVLVAAGAA------SGTIKLWDLEEAKIVRTLT 98 (819)
Q Consensus 30 ~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~--~--~V~~-l~fspdg~~Lasgs~------DG~I~IWDl~s~~~i~~l~ 98 (819)
..+++++.|+.|..+|..+++.+....... . .+.+ .... ++ .+++++. +|.|..+|..+|+.+..+.
T Consensus 116 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 357778889999999999999988765321 0 1111 1111 33 5556554 7999999999999887765
Q ss_pred CCCCC--------------------------------------eEEEEEecCCCEEEEEECC----------------Cc
Q 003445 99 GHRSN--------------------------------------CISVDFHPFGEFFASGSLD----------------TN 124 (819)
Q Consensus 99 ~h~~~--------------------------------------I~sl~fsp~g~~Lasgs~D----------------g~ 124 (819)
..... ...+++.+....++.++.+ +.
T Consensus 194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~ 273 (571)
T 2ad6_A 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT 273 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence 32110 0135666766677666532 35
Q ss_pred EEEEECCCCeEEEEEecCC----------CCeEEEEEcCCCC---EEEEEECCCeEEEEECCCCeEEEEEecCC------
Q 003445 125 LKIWDIRKKGCIHTYKGHT----------RGVNAIRFTPDGR---WVVSGGEDNTVKLWDLTAGKLLHDFKCHE------ 185 (819)
Q Consensus 125 I~IwDi~t~~~i~~~~~h~----------~~I~sl~fspdg~---~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~------ 185 (819)
|..+|..+++.+..++... .++ -+....+|+ .++.++.+|.++++|..+|+.+..+....
T Consensus 274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 9999999999998886321 112 122224674 57778889999999999999888765321
Q ss_pred -------CCe--------------------------EEEEEeCCCCEEEEEE----------------------------
Q 003445 186 -------GQI--------------------------QCIDFHPHEFLLATGS---------------------------- 204 (819)
Q Consensus 186 -------~~I--------------------------~sl~fspdg~~Lasgs---------------------------- 204 (819)
.++ ..++++|+..+|++..
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 111 2357888877776654
Q ss_pred ---------CCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeeccc
Q 003445 205 ---------ADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGW 268 (819)
Q Consensus 205 ---------~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~ 268 (819)
.+|.|..||..+++.+..+.... .+....+...+..+++++.+ .+..||.++++....+....
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred cCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 35789999999999887764332 22333333345566666655 59999999988877665543
No 256
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.61 E-value=2.9e-05 Score=82.82 Aligned_cols=233 Identities=13% Similarity=0.074 Sum_probs=147.5
Q ss_pred eEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC--CeEEE
Q 003445 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS--GTIKL 85 (819)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D--G~I~I 85 (819)
.+.+|..+ .....++|++ +++++++-..++.|..||... .....+. ....+..+++.++++++++.... ..|..
T Consensus 24 ~~~~~p~~-~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAP-DGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEECTT-CCEEEEEECT-TSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred EeEeCCCC-CCcceEEECC-CCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 34455433 5688999999 566777766789999999764 3333333 23568899999999976665433 24777
Q ss_pred EECCCCeEEEEEcC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeE-EEEEec---------CCCCeEEEEEcCC
Q 003445 86 WDLEEAKIVRTLTG-HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC-IHTYKG---------HTRGVNAIRFTPD 154 (819)
Q Consensus 86 WDl~s~~~i~~l~~-h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~-i~~~~~---------h~~~I~sl~fspd 154 (819)
+|..+++....... .......++..+.+..+++-..++.|+++|...+.. +..... .-.....+ +++
T Consensus 100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~d 177 (306)
T 2p4o_A 100 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRF 177 (306)
T ss_dssp EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEE
T ss_pred EcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcC
Confidence 88888775433321 222334555555444444444588999999876532 221111 11234455 788
Q ss_pred CCEEEEEE-CCCeEEEEECCC-CeE--EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEE--EeCCCCC
Q 003445 155 GRWVVSGG-EDNTVKLWDLTA-GKL--LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIG--SAGPETS 228 (819)
Q Consensus 155 g~~L~sgs-~Dg~I~IwDl~t-~~~--i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~--~~~~~~~ 228 (819)
+++|+.+. ..+.|..||+.. ++. ...+.. ......++++++|+++++....+.|.+||.. ++... .+.....
T Consensus 178 g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~ 255 (306)
T 2p4o_A 178 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVI 255 (306)
T ss_dssp TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCT
T ss_pred CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccC
Confidence 87766554 567899999874 321 111211 1345678999999887777778899999976 65532 3333335
Q ss_pred CeeEEEEe---CCCCEEEEEECC
Q 003445 229 GVRCLTFN---PDGRTLLCGLHE 248 (819)
Q Consensus 229 ~I~sl~fs---pdg~~Lasgs~d 248 (819)
..++++|. ++++.|+++..+
T Consensus 256 ~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 256 GSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TEEEEEECCSTTTTTEEEEEECT
T ss_pred CceEEEEecccCCCCEEEEECCC
Confidence 68999998 898888877654
No 257
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.61 E-value=1.3e-05 Score=82.78 Aligned_cols=199 Identities=9% Similarity=0.073 Sum_probs=139.0
Q ss_pred ceEEEecCCC--CCeEEEEEcCCCCEEEEEECCC--eEEEEECCCCeEEEEEcCCCCC-eEEEEEecCCCEEEEEECCCc
Q 003445 50 NAILSLSGHT--SGIDSVSFDSSEVLVAAGAASG--TIKLWDLEEAKIVRTLTGHRSN-CISVDFHPFGEFFASGSLDTN 124 (819)
Q Consensus 50 ~~i~~l~~h~--~~V~~l~fspdg~~Lasgs~DG--~I~IWDl~s~~~i~~l~~h~~~-I~sl~fsp~g~~Lasgs~Dg~ 124 (819)
+.+..+ .|. .....+.|+. +.++.+.+.+| .|+.+|+.+++.+..+...... -..+++. .++.+...-.++.
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSE
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCE
Confidence 344455 354 3577899986 55666666654 8999999999999888643322 1334444 2334444556899
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC-----CCeEEEEEeCCCCE
Q 003445 125 LKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE-----GQIQCIDFHPHEFL 199 (819)
Q Consensus 125 I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~-----~~I~sl~fspdg~~ 199 (819)
+.+||..+.+.+.++..... =+.++ +++..|+.+..++.|.++|..+.+.+..+.... ..++.+.|. +|.+
T Consensus 87 v~v~D~~tl~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l 162 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL 162 (243)
T ss_dssp EEEEETTTTEEEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCcCcEEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence 99999999999999875332 24454 467777777778899999999998888776422 346677776 6666
Q ss_pred EEEEECCCeEEEEECCCCeEEEEeCCC-------------CCCeeEEEEeCCCCEEEEEECCCEEEEEe
Q 003445 200 LATGSADRTVKFWDLETFELIGSAGPE-------------TSGVRCLTFNPDGRTLLCGLHESLKVFSW 255 (819)
Q Consensus 200 Lasgs~Dg~I~iwDl~~~~~l~~~~~~-------------~~~I~sl~fspdg~~Lasgs~d~I~Vwd~ 255 (819)
++..-.+..|.+.|.++++.+..+... ....+.|+|+|+++.|++.+..--++|.+
T Consensus 163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v 231 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEI 231 (243)
T ss_dssp EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEE
Confidence 655556889999999999998876421 23568999999988888776553344443
No 258
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.60 E-value=4e-05 Score=92.73 Aligned_cols=282 Identities=11% Similarity=0.042 Sum_probs=177.2
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec--------------CCCCCeEEEEEcCCCCEEEEEECCC
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS--------------GHTSGIDSVSFDSSEVLVAAGAASG 81 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~--------------~h~~~V~~l~fspdg~~Lasgs~DG 81 (819)
...|.++...+ ++ .|..|...+-|.+++..+........ .....|.++....+|.+ ..|+.++
T Consensus 257 ~~~i~~i~~d~-~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~l-Wigt~~~ 333 (781)
T 3v9f_A 257 SSYIFSIKQLK-DN-KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNI-WIGTWGG 333 (781)
T ss_dssp CCCEEEEEECT-TS-EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCE-EEEEBSS
T ss_pred CceEEEEEECC-CC-CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCE-EEEecCC
Confidence 35688888876 44 36667774568999986654322111 13457999999988864 4667677
Q ss_pred eEEEEECCCCeEEEEEc---------CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE---ecCCCCeEEE
Q 003445 82 TIKLWDLEEAKIVRTLT---------GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY---KGHTRGVNAI 149 (819)
Q Consensus 82 ~I~IWDl~s~~~i~~l~---------~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~---~~h~~~I~sl 149 (819)
-|..|+........... .....|.++...++|. |..|+.++-|..||..++...... ......|.++
T Consensus 334 Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i 412 (781)
T 3v9f_A 334 GINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS 412 (781)
T ss_dssp CEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred eEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence 79999987654332211 0235688998887775 556666667999998754332211 1234568999
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC-
Q 003445 150 RFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK--CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE- 226 (819)
Q Consensus 150 ~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~--~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~- 226 (819)
...++|. |..|+.++-|..||..+++...... .....|.++...+++. |..|+. +-|..||..+++........
T Consensus 413 ~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~ 489 (781)
T 3v9f_A 413 LKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSN 489 (781)
T ss_dssp EECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTT
T ss_pred EECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcc
Confidence 9888776 5557777789999988775433221 1345789998888776 444555 56899998876543322222
Q ss_pred ----CCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeeeee---ccccceeEeEe-cCCCEEEEEEcCCeEEEEEecC
Q 003445 227 ----TSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVD---VGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 227 ----~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~---~~~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ld~ 298 (819)
...|.++...++|.+.+.+..+++..|+.+..+...... .....+..+.. .+|.+.+++ .+|-|..|+.+.
T Consensus 490 ~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~ 568 (781)
T 3v9f_A 490 SQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARN 568 (781)
T ss_dssp SSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTT
T ss_pred cccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCC
Confidence 467899999999987766655788888766554332211 11233445544 456655544 455548888888
Q ss_pred Cceeeee
Q 003445 299 SRIEPYT 305 (819)
Q Consensus 299 ~~~~p~~ 305 (819)
.++..|.
T Consensus 569 ~~~~~~~ 575 (781)
T 3v9f_A 569 FDYQVFQ 575 (781)
T ss_dssp CCCEEEC
T ss_pred CcEEEcc
Confidence 7777664
No 259
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.59 E-value=6e-05 Score=91.26 Aligned_cols=280 Identities=11% Similarity=0.103 Sum_probs=175.1
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecC-------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSG-------HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~-------h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (819)
..|.++...+ ++. |..|..+ -+.+||..+++....... ....|.++....++.+. .|+..+-|.++|..
T Consensus 211 ~~i~~i~~d~-~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 211 NDVRCIYKDT-NGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQ 286 (781)
T ss_dssp SSEEEEEECT-TCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEE-EEESSSCEEEEETT
T ss_pred CceeEEEEcC-CCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCCCeEEECCC
Confidence 5688888876 444 4555555 599999766544322111 24579999998887654 56664568899988
Q ss_pred CCeEEEEEc--------------CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe---------cCCCCe
Q 003445 90 EAKIVRTLT--------------GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK---------GHTRGV 146 (819)
Q Consensus 90 s~~~i~~l~--------------~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~---------~h~~~I 146 (819)
+++...... .....|.++...++|. |..|+.++-|..|+........... .....|
T Consensus 287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v 365 (781)
T 3v9f_A 287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVV 365 (781)
T ss_dssp CC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCE
T ss_pred CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcce
Confidence 765432211 1235688998888775 6667767779999987654332211 023568
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE---ecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 003445 147 NAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF---KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA 223 (819)
Q Consensus 147 ~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~---~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~ 223 (819)
.++...++|. |..|+.++-|.+||..++...... ......|.++...++|.+ .+|+.++-|..||..+++.....
T Consensus 366 ~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~ 443 (781)
T 3v9f_A 366 SSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIE 443 (781)
T ss_dssp EEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECC
T ss_pred EEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEec
Confidence 9999988776 556776777899998755332211 123456899988877764 44676677999998877644322
Q ss_pred C--CCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeeeeecc-----ccceeEeEe-cCCCEEEEEEcCCeEEEEE
Q 003445 224 G--PETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVG-----WSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (819)
Q Consensus 224 ~--~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~-----~s~i~~l~~-~dg~lLa~~~~Dg~V~IW~ 295 (819)
. .....|.++...++|.+.+ |+.+++..|+..+.+........ ...+..+.. .+|.+.++ ..++.|..|+
T Consensus 444 ~~~~~~~~v~~i~~d~~g~lwi-gt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~ 521 (781)
T 3v9f_A 444 LEKNELLDVRVFYEDKNKKIWI-GTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYT 521 (781)
T ss_dssp STTTCCCCEEEEEECTTSEEEE-EETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEEC
T ss_pred cCCCCCCeEEEEEECCCCCEEE-EECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEe
Confidence 1 2346789999988887555 44578888887765543332211 234555554 45555554 4444577788
Q ss_pred ecCCceeeee
Q 003445 296 VDISRIEPYT 305 (819)
Q Consensus 296 ld~~~~~p~~ 305 (819)
.+..+...+.
T Consensus 522 ~~~~~~~~~~ 531 (781)
T 3v9f_A 522 PDMQLVRKFN 531 (781)
T ss_dssp TTCCEEEEEC
T ss_pred CCCCeEEEcc
Confidence 8777766654
No 260
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.52 E-value=2.3e-05 Score=81.91 Aligned_cols=182 Identities=11% Similarity=0.084 Sum_probs=132.5
Q ss_pred ccCCC--EEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCe--EEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 14 AHSST--VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGI--DSVSFDSSEVLVAAGAASGTIKLWDLE 89 (819)
Q Consensus 14 ~H~~~--V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V--~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (819)
.|... ...+.|+ ++.++++.+.+|.|+++|+.+++.+..+ - .... ..+++..+ ++.+....++.+.+||..
T Consensus 50 phd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~ 124 (268)
T 3nok_A 50 PHATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGE-RLYQLTWTEGLLFTWSGM 124 (268)
T ss_dssp ECCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSS-CEEEEESSSCEEEEEETT
T ss_pred cCCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCC-EEEEEEccCCEEEEEECC
Confidence 56544 4788887 5778888889999999999999988877 2 2233 34666543 444445578999999999
Q ss_pred CCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-----CCeEEEEEcCCCCEEEEEECC
Q 003445 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT-----RGVNAIRFTPDGRWVVSGGED 164 (819)
Q Consensus 90 s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~-----~~I~sl~fspdg~~L~sgs~D 164 (819)
+.+.+.++.... .-+.++ ++++.|+.+..++.|.++|..+.+.+.++.-.. ..++.+.|. +|+..+....+
T Consensus 125 Tl~~~~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s 200 (268)
T 3nok_A 125 PPQRERTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHS 200 (268)
T ss_dssp TTEEEEEEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTC
T ss_pred cCcEEEEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCC
Confidence 999999988532 224444 457887777778999999999999888775321 245677877 77544444467
Q ss_pred CeEEEEECCCCeEEEEEecC-------------CCCeEEEEEeCCCCEEEEEE
Q 003445 165 NTVKLWDLTAGKLLHDFKCH-------------EGQIQCIDFHPHEFLLATGS 204 (819)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~h-------------~~~I~sl~fspdg~~Lasgs 204 (819)
+.|.+.|..+++.+..+... ..-.+.|+|+|++..|++.+
T Consensus 201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 89999999999998887632 13568999999865555544
No 261
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.50 E-value=4.2e-05 Score=79.06 Aligned_cols=192 Identities=10% Similarity=0.044 Sum_probs=134.6
Q ss_pred ceEEEEeccCC--CEEEEEEeeCCCcEEEEEeCCC--eEEEEECCCCceEEEecCCCCC-eEEEEEcCCCCEEEEEECCC
Q 003445 7 YKLQEFVAHSS--TVNCLKIGRKSSRVLVTGGEDH--KVNLWAIGKPNAILSLSGHTSG-IDSVSFDSSEVLVAAGAASG 81 (819)
Q Consensus 7 ~kl~~~~~H~~--~V~~lafsp~~~~~Latgs~Dg--~V~IWdl~~~~~i~~l~~h~~~-V~~l~fspdg~~Lasgs~DG 81 (819)
+++..-..|.. -...+.|+. +.++.+.+.+| .|+.+|+.+++.+..+...... -..+++.. +++......++
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~ 85 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNH 85 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSS
T ss_pred eEEEEEcCCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCC
Confidence 34444446765 467999984 56666666654 8999999999999887643322 13344442 33444455689
Q ss_pred eEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-----CCeEEEEEcCCCC
Q 003445 82 TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT-----RGVNAIRFTPDGR 156 (819)
Q Consensus 82 ~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~-----~~I~sl~fspdg~ 156 (819)
.+.+||..+.+.+.++..... -+.++ +++..|+.+..++.|.++|..+.+.+.++.-.. ..++.+.|. +|+
T Consensus 86 ~v~v~D~~tl~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp EEEEEETTTTEEEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECCcCcEEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence 999999999999999885432 24444 467777776678999999999999888776422 345667776 666
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEecC-------------CCCeEEEEEeCCCCEEEEEEC
Q 003445 157 WVVSGGEDNTVKLWDLTAGKLLHDFKCH-------------EGQIQCIDFHPHEFLLATGSA 205 (819)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t~~~i~~~~~h-------------~~~I~sl~fspdg~~Lasgs~ 205 (819)
.++..-.+..|.+.|..+++.+..+... ..-.+.|+|+|++..|++.+.
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 4544446789999999999999887622 124689999998766666553
No 262
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.45 E-value=0.00018 Score=78.53 Aligned_cols=233 Identities=9% Similarity=0.008 Sum_probs=146.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEE-ECCCcEEEEECCCCeEEEEE
Q 003445 61 GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASG-SLDTNLKIWDIRKKGCIHTY 139 (819)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasg-s~Dg~I~IwDi~t~~~i~~~ 139 (819)
...|.+..++. +|+.+ ....|+..++........+.. ......++|++.+..|+.. ...+.|+.+++........+
T Consensus 35 ~~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 35 RRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SSCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CCcccccccCc-eeEee-cccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 34555555533 44443 345688888877665544443 3457899999866655544 45788999998876544434
Q ss_pred ecCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE-CC-CeEEEEECCC
Q 003445 140 KGHTRGVNAIRFTPDGRWV-VSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS-AD-RTVKFWDLET 216 (819)
Q Consensus 140 ~~h~~~I~sl~fspdg~~L-~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs-~D-g~I~iwDl~~ 216 (819)
.........+++.+.+..| ++-...+.|.++++........+...-.....++++|.+..|+... .. +.|..+++..
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 3333446788998755555 4545568899999875543333333345678999999655555444 44 7899998875
Q ss_pred CeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEE
Q 003445 217 FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVW 294 (819)
Q Consensus 217 ~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW 294 (819)
..........-.....++|++++..|+.+... .|..++++.......+......-..+.+.++.++.+-+..+.|..+
T Consensus 192 ~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~ 271 (349)
T 3v64_C 192 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSA 271 (349)
T ss_dssp CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEE
T ss_pred CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEE
Confidence 43332223334557899999988888877554 4777777654333333333333344555666666676777777777
Q ss_pred Ee
Q 003445 295 VV 296 (819)
Q Consensus 295 ~l 296 (819)
+.
T Consensus 272 ~~ 273 (349)
T 3v64_C 272 NK 273 (349)
T ss_dssp ET
T ss_pred Ec
Confidence 63
No 263
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.44 E-value=2e-05 Score=92.58 Aligned_cols=233 Identities=13% Similarity=0.098 Sum_probs=151.9
Q ss_pred EEEEeCCCeEEEEECCCCceEEEecCCCC----CeEE-EEEcCCCCEEEEEE------CCCeEEEEECCCCeEEEEEcCC
Q 003445 32 LVTGGEDHKVNLWAIGKPNAILSLSGHTS----GIDS-VSFDSSEVLVAAGA------ASGTIKLWDLEEAKIVRTLTGH 100 (819)
Q Consensus 32 Latgs~Dg~V~IWdl~~~~~i~~l~~h~~----~V~~-l~fspdg~~Lasgs------~DG~I~IWDl~s~~~i~~l~~h 100 (819)
|++++.|+.|..+|..+++.+........ .+.+ ..+. ++ .+++++ .+|.|+.+|..+|+.+-.+...
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 67788899999999999999887653220 1111 1111 34 455554 3799999999999988776532
Q ss_pred CCC-------------------------------------e-EEEEEecCCCEEEEEECC----------------CcEE
Q 003445 101 RSN-------------------------------------C-ISVDFHPFGEFFASGSLD----------------TNLK 126 (819)
Q Consensus 101 ~~~-------------------------------------I-~sl~fsp~g~~Lasgs~D----------------g~I~ 126 (819)
... + ..+++.+....++.++.+ +.|.
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 211 0 134566777777777665 3799
Q ss_pred EEECCCCeEEEEEecCCC----------CeEEEEEc-CCC---CEEEEEECCCeEEEEECCCCeEEEEEecCC-------
Q 003445 127 IWDIRKKGCIHTYKGHTR----------GVNAIRFT-PDG---RWVVSGGEDNTVKLWDLTAGKLLHDFKCHE------- 185 (819)
Q Consensus 127 IwDi~t~~~i~~~~~h~~----------~I~sl~fs-pdg---~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~------- 185 (819)
.+|..+++.+..++.... ++ -+... .+| ..++.++.+|.++++|..+|+.+.......
T Consensus 282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~-l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMM-LSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEeCCCCceeeEeecCCCccccccCCCccE-EEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 999999999988874321 12 12222 467 467778899999999999999987765211
Q ss_pred -----C-Ce--------------------------EEEEEeCCCCEEEEEE-----------------------------
Q 003445 186 -----G-QI--------------------------QCIDFHPHEFLLATGS----------------------------- 204 (819)
Q Consensus 186 -----~-~I--------------------------~sl~fspdg~~Lasgs----------------------------- 204 (819)
+ ++ ..++++|+..++++..
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 1 11 2356777666555431
Q ss_pred ----------CCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeeeeeccc
Q 003445 205 ----------ADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGW 268 (819)
Q Consensus 205 ----------~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~ 268 (819)
.+|.|.-||+.+++.+...... .+...-.+...+.+++.++.+ .++.||.++++.+-.+....
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~ 514 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS 514 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CCcCCcccCCCcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCC
Confidence 3478999999999987766422 112211223345566667655 59999999988876665543
No 264
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.44 E-value=6.4e-05 Score=78.50 Aligned_cols=201 Identities=10% Similarity=0.150 Sum_probs=137.9
Q ss_pred EEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecC-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSG-HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (819)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~-h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (819)
.+.+-.+.+..++|+|+++.++++...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3445557899999999878888888899999999987 887777642 23568899999999887776677899999886
Q ss_pred CCe---EEEEEc------CCCCCeEEEEEecCCCEEEEEECCCcEEEEECC---CCeEEEEEe-------cCCCCeEEEE
Q 003445 90 EAK---IVRTLT------GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR---KKGCIHTYK-------GHTRGVNAIR 150 (819)
Q Consensus 90 s~~---~i~~l~------~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~---t~~~i~~~~-------~h~~~I~sl~ 150 (819)
... .+.... ........|+|.|.++.|+++.......+|.+. ....+..+. .+...+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 543 223332 123456899999999777777665555555443 111122221 1234578999
Q ss_pred EcCC-CCEEEEEECCCeEEEEECCCCeEEEEEecCC---------CCeEEEEEeCCCCEEEEEECCCeEEEEEC
Q 003445 151 FTPD-GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE---------GQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (819)
Q Consensus 151 fspd-g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~---------~~I~sl~fspdg~~Lasgs~Dg~I~iwDl 214 (819)
++|. +++++.......|.++|.. |+.+..+.-.. ..--.|+|.++|+++++ ++-+.++.|.-
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 9995 4455555667789999976 66666555332 25689999999985555 67777777654
No 265
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.44 E-value=0.00061 Score=73.14 Aligned_cols=226 Identities=8% Similarity=-0.031 Sum_probs=141.0
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEE-EECCCcEEEEECCC----CeEEEEEecCCCCeE
Q 003445 73 LVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFAS-GSLDTNLKIWDIRK----KGCIHTYKGHTRGVN 147 (819)
Q Consensus 73 ~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Las-gs~Dg~I~IwDi~t----~~~i~~~~~h~~~I~ 147 (819)
+|+.+ ....|+..|+...+....+. .......++|++.+..|+. -...+.|+.+++.. ......+...-....
T Consensus 3 ~ll~~-~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEE-CBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEE-CCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 34443 34679999998877655554 3456789999987665554 44568999999876 222222332224467
Q ss_pred EEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC--CeEEEEECCCCeEEEEeC
Q 003445 148 AIRFTPDGRWVV-SGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD--RTVKFWDLETFELIGSAG 224 (819)
Q Consensus 148 sl~fspdg~~L~-sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~D--g~I~iwDl~~~~~l~~~~ 224 (819)
.+++.+.+..|+ +-...+.|.++|+........+.........++++|.+..|+..... +.|..+++..........
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence 899987555454 44567899999987554333333334567899999976655555443 689988886433322222
Q ss_pred CCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecCCceeeeeec--cccceeEeEecCCCEEEEEEcCCeEEEEEecCCc
Q 003445 225 PETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDV--GWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISR 300 (819)
Q Consensus 225 ~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~~~~~~~--~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~ 300 (819)
..-.....++|++++..|+.+... .|..++++.......... ....-..+.+.++.++.+.+..+.|..++...++
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCc
Confidence 334567899999988888877554 588888875333322222 1222344555566676777777888888765444
No 266
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.43 E-value=7.9e-05 Score=87.28 Aligned_cols=238 Identities=12% Similarity=0.087 Sum_probs=152.9
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCCCC----CeE-E-EEEcC--CCC-EEEEEE------CCCeEEEEECCCCeEE
Q 003445 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTS----GID-S-VSFDS--SEV-LVAAGA------ASGTIKLWDLEEAKIV 94 (819)
Q Consensus 30 ~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~----~V~-~-l~fsp--dg~-~Lasgs------~DG~I~IWDl~s~~~i 94 (819)
..++.++.|+.|..+|..+++.+........ .+. . +.... +++ .+++++ .+|.|..+|..+|+.+
T Consensus 118 ~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~ 197 (582)
T 1flg_A 118 DKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEI 197 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEE
T ss_pred CEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEE
Confidence 3577788899999999999999887653321 111 1 11111 233 566654 3789999999999987
Q ss_pred EEEcCCCCCe-----------------------------------------EEEEEecCCCEEEEEEC------------
Q 003445 95 RTLTGHRSNC-----------------------------------------ISVDFHPFGEFFASGSL------------ 121 (819)
Q Consensus 95 ~~l~~h~~~I-----------------------------------------~sl~fsp~g~~Lasgs~------------ 121 (819)
-........+ ..+++.|....++.+..
T Consensus 198 W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~ 277 (582)
T 1flg_A 198 WMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTA 277 (582)
T ss_dssp EEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSC
T ss_pred eecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccccc
Confidence 6654211000 12456666777776663
Q ss_pred --------C----CcEEEEECCCCeEEEEEec--CC--------CCeEEEEEc-CCCC---EEEEEECCCeEEEEECCCC
Q 003445 122 --------D----TNLKIWDIRKKGCIHTYKG--HT--------RGVNAIRFT-PDGR---WVVSGGEDNTVKLWDLTAG 175 (819)
Q Consensus 122 --------D----g~I~IwDi~t~~~i~~~~~--h~--------~~I~sl~fs-pdg~---~L~sgs~Dg~I~IwDl~t~ 175 (819)
| +.|..+|..+++.+..++. |. .++. +... .+|+ .++.++.+|.++++|..+|
T Consensus 278 ~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 356 (582)
T 1flg_A 278 KGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp TTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred CCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence 2 5899999999999988863 22 1121 1221 4674 7888999999999999999
Q ss_pred eEEEEEecCCC------------C-e--------------------------------EEEEEeCCCCEEEEEE------
Q 003445 176 KLLHDFKCHEG------------Q-I--------------------------------QCIDFHPHEFLLATGS------ 204 (819)
Q Consensus 176 ~~i~~~~~h~~------------~-I--------------------------------~sl~fspdg~~Lasgs------ 204 (819)
+.+..+..... . + ..++++|+..++++..
T Consensus 357 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~ 436 (582)
T 1flg_A 357 KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKED 436 (582)
T ss_dssp CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEE
T ss_pred CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhccee
Confidence 99877654320 0 0 1345666654544432
Q ss_pred ---------------------------CCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEec
Q 003445 205 ---------------------------ADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWE 256 (819)
Q Consensus 205 ---------------------------~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~ 256 (819)
.+|.|.-||+.+++.+....... ++..-.....+.++++++.+ .++.||.+
T Consensus 437 ~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~ 515 (582)
T 1flg_A 437 YWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAK 515 (582)
T ss_dssp EEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETT
T ss_pred eecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECC
Confidence 25789999999999887654332 22221222245567777665 59999999
Q ss_pred CCceeeeeecccc
Q 003445 257 PIRCHDAVDVGWS 269 (819)
Q Consensus 257 ~~~~~~~~~~~~s 269 (819)
+++.+-.+.....
T Consensus 516 tG~~lW~~~~~~g 528 (582)
T 1flg_A 516 SGKELWKFQTGSG 528 (582)
T ss_dssp TCCEEEEEECSSC
T ss_pred CCCEEEEecCCCC
Confidence 9988777665543
No 267
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.41 E-value=9.7e-06 Score=96.35 Aligned_cols=267 Identities=13% Similarity=0.090 Sum_probs=156.0
Q ss_pred EEEEeeCCCcEEEEEeCCC-----------eEEEEECCCCceE--EEec-CCCCCeEEEEEcCCCCEEEEEEC-CCeEEE
Q 003445 21 CLKIGRKSSRVLVTGGEDH-----------KVNLWAIGKPNAI--LSLS-GHTSGIDSVSFDSSEVLVAAGAA-SGTIKL 85 (819)
Q Consensus 21 ~lafsp~~~~~Latgs~Dg-----------~V~IWdl~~~~~i--~~l~-~h~~~V~~l~fspdg~~Lasgs~-DG~I~I 85 (819)
++++.+.++++++.|+.+. .+.+||..+++.. ..+. .+.....++++..++++++.|+. ++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 5566664677888887543 5889998776542 2222 23334456788899999999984 468999
Q ss_pred EECCCCeEEEEEcCCC-CCeEEEEEecCCCEEEEEE-CC-----CcEEEEECCCCeEEEEE----ecCCCCeEEEEEcCC
Q 003445 86 WDLEEAKIVRTLTGHR-SNCISVDFHPFGEFFASGS-LD-----TNLKIWDIRKKGCIHTY----KGHTRGVNAIRFTPD 154 (819)
Q Consensus 86 WDl~s~~~i~~l~~h~-~~I~sl~fsp~g~~Lasgs-~D-----g~I~IwDi~t~~~i~~~----~~h~~~I~sl~fspd 154 (819)
||..+.+....-..+. ..-.+++..++++.++.|+ .+ ..+.+||..+......- ......-....+..+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 9998876543322111 1223455667899999988 34 56999999887644320 000000000112234
Q ss_pred CCEEEEEECC---------CeEEEEECCCCeEEEEEecCCC---------CeEEEEEeC-CCCEEEEEECCC--------
Q 003445 155 GRWVVSGGED---------NTVKLWDLTAGKLLHDFKCHEG---------QIQCIDFHP-HEFLLATGSADR-------- 207 (819)
Q Consensus 155 g~~L~sgs~D---------g~I~IwDl~t~~~i~~~~~h~~---------~I~sl~fsp-dg~~Lasgs~Dg-------- 207 (819)
+..++.|+.+ ..+..||..+.........+.. .-.++.|.. ++++++.|+.++
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~ 429 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT 429 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence 5555555444 3567889887764433322211 224455543 688888887543
Q ss_pred ---eEEEEECCCCeEEEEe--CCCCCC-eeEEEEeCCCCEEEEEEC------------CCEEEEEecCCceeeeeecccc
Q 003445 208 ---TVKFWDLETFELIGSA--GPETSG-VRCLTFNPDGRTLLCGLH------------ESLKVFSWEPIRCHDAVDVGWS 269 (819)
Q Consensus 208 ---~I~iwDl~~~~~l~~~--~~~~~~-I~sl~fspdg~~Lasgs~------------d~I~Vwd~~~~~~~~~~~~~~s 269 (819)
.|.+||..+....... ...... -.++++.|+|++++.|+. ..+.+||..+.+....-.....
T Consensus 430 ~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~ 509 (656)
T 1k3i_A 430 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIV 509 (656)
T ss_dssp CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSC
T ss_pred cceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCc
Confidence 6888998876654432 112222 235566789999998863 2478888776554332211111
Q ss_pred c--e-eEeEecCCCEEEEEEc
Q 003445 270 R--L-SDLNVHEGKLLGCSYN 287 (819)
Q Consensus 270 ~--i-~~l~~~dg~lLa~~~~ 287 (819)
. . ..+..++|++++.|+.
T Consensus 510 R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 510 RVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCTTEEEEECTTSCEEEEECC
T ss_pred cccccHhhcCCCcEEEecCCC
Confidence 1 1 1223368888888875
No 268
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.38 E-value=0.00011 Score=88.78 Aligned_cols=190 Identities=13% Similarity=0.080 Sum_probs=114.6
Q ss_pred CeEEEEEc-CCCCEEEEEEC-CC----eEEEEECCCC-eEEE-EEcCCCCCeEEEEEecCCCEEEEEECC-----CcEEE
Q 003445 61 GIDSVSFD-SSEVLVAAGAA-SG----TIKLWDLEEA-KIVR-TLTGHRSNCISVDFHPFGEFFASGSLD-----TNLKI 127 (819)
Q Consensus 61 ~V~~l~fs-pdg~~Lasgs~-DG----~I~IWDl~s~-~~i~-~l~~h~~~I~sl~fsp~g~~Lasgs~D-----g~I~I 127 (819)
.+....|+ |||++|+.+.. +| +|+++|+.++ +.+. .+. .....+.|+|+|+.|+....+ ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99998876543 33 5999999988 6321 111 112367899999988877665 36888
Q ss_pred EECCCCe--EEEEEe-cCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCC--eE-EEEE-ecCCCCeEEEEEeCCC
Q 003445 128 WDIRKKG--CIHTYK-GHTRGVNAIRFTPDGRWVVSGGE---DNTVKLWDLTAG--KL-LHDF-KCHEGQIQCIDFHPHE 197 (819)
Q Consensus 128 wDi~t~~--~i~~~~-~h~~~I~sl~fspdg~~L~sgs~---Dg~I~IwDl~t~--~~-i~~~-~~h~~~I~sl~fspdg 197 (819)
+++.++. ....+. ........+.|+|||++|+.... ...|+++|+.++ +. +..+ .........+.|+..+
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 8988764 223333 22345678899999999887663 346899999875 22 1333 2334556667666555
Q ss_pred CEEEEEECC----CeEEEEECCCCeEEEE-eCCCCC--CeeEEEEeCCCCEEE-EEECCC---EEEEEe
Q 003445 198 FLLATGSAD----RTVKFWDLETFELIGS-AGPETS--GVRCLTFNPDGRTLL-CGLHES---LKVFSW 255 (819)
Q Consensus 198 ~~Lasgs~D----g~I~iwDl~~~~~l~~-~~~~~~--~I~sl~fspdg~~La-sgs~d~---I~Vwd~ 255 (819)
.+++....+ ..|..+|+.+...... +..+.. .+..+.+. +..|+ +...++ +.+++.
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence 555555443 3677888765211111 122222 34455554 44554 444443 555563
No 269
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.38 E-value=0.00093 Score=72.02 Aligned_cols=277 Identities=10% Similarity=0.008 Sum_probs=156.0
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec----CCCCCeEEEEEcCCCCEEEEEECCC
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS----GHTSGIDSVSFDSSEVLVAAGAASG 81 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~----~h~~~V~~l~fspdg~~Lasgs~DG 81 (819)
.|+...+ .....+.+|.|.. .+..++ ++.+|.|. +..+.++.-..+. .....+.+|.|.+ +..++ ++..|
T Consensus 26 ~W~~~~~-~~~~~~~~v~~~~-~~~~~~-~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g 99 (327)
T 2xbg_A 26 PWEAIQL-PTTATILDMSFID-RHHGWL-VGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPP 99 (327)
T ss_dssp CEEEEEC-SCSSCEEEEEESS-SSCEEE-EETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETT
T ss_pred CceEeec-CCCCcEEEEEECC-CCcEEE-EcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCC
Confidence 3444433 3345799999975 455555 45677653 3333343222221 1244688999986 44444 45567
Q ss_pred eEEEEECCCCeEEEEEc---CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe-EEEEEecCCCCeEEEEEcCCCCE
Q 003445 82 TIKLWDLEEAKIVRTLT---GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG-CIHTYKGHTRGVNAIRFTPDGRW 157 (819)
Q Consensus 82 ~I~IWDl~s~~~i~~l~---~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~-~i~~~~~h~~~I~sl~fspdg~~ 157 (819)
.|.. ..+.++.-..+. .+...+..+.+.+++..++++ .+|.|+.- .+.++ .......+...+..+.+.+++.+
T Consensus 100 ~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~ 176 (327)
T 2xbg_A 100 IMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEY 176 (327)
T ss_dssp EEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCE
T ss_pred eEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcE
Confidence 5544 323343322222 233457788887777666655 45655332 22232 22223345567899999999887
Q ss_pred EEEEECCCeEEEEEC--CCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCC----CCCCee
Q 003445 158 VVSGGEDNTVKLWDL--TAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP----ETSGVR 231 (819)
Q Consensus 158 L~sgs~Dg~I~IwDl--~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~----~~~~I~ 231 (819)
++.+...+..+-+|- .+.+.+. ......+..+.+.+++.+++. +.+|.+++++...++....+.. ....+.
T Consensus 177 ~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~ 253 (327)
T 2xbg_A 177 VAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFL 253 (327)
T ss_dssp EEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEE
T ss_pred EEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceE
Confidence 766644333444442 2333332 234567889999998876654 4678888775443444333321 224588
Q ss_pred EEEEeCCCCEEEEEECCCEEEEEecCCceeeeeecc---ccceeEeEecCCCEEEEEEcCCeEEEEE
Q 003445 232 CLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVG---WSRLSDLNVHEGKLLGCSYNQSCVGVWV 295 (819)
Q Consensus 232 sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~---~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ 295 (819)
.+.+.+++.+++++..+.+ .+..+.++....+... ...+..+.+.++..+.+++.+|.|.-++
T Consensus 254 ~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 254 DLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 319 (327)
T ss_dssp EEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred EEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence 9999998888888876655 4555555554433321 1334455554455566667788766554
No 270
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.37 E-value=0.00023 Score=77.76 Aligned_cols=227 Identities=8% Similarity=-0.020 Sum_probs=139.9
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeEE
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG-AASGTIKLWDLEEAKIV 94 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasg-s~DG~I~IWDl~s~~~i 94 (819)
.+..+|.+..+ .. +|+.+. ...|+..++........+.. ...+..++|++.+..|+.. ...+.|..+++......
T Consensus 33 ~d~~~C~~~~~-~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~ 108 (349)
T 3v64_C 33 PDRRSCKALGP-EP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE 108 (349)
T ss_dssp TTSSCEEESSS-CC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCCCccccccc-Cc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCce
Confidence 44556776665 34 344343 34588888765554444443 4458899999766655544 45788999998876544
Q ss_pred EEEcCCCCCeEEEEEecCCCE-EEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CC-CeEEEEE
Q 003445 95 RTLTGHRSNCISVDFHPFGEF-FASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-ED-NTVKLWD 171 (819)
Q Consensus 95 ~~l~~h~~~I~sl~fsp~g~~-Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs-~D-g~I~IwD 171 (819)
..+.........+++.+.+.. +++-...+.|.++++........+...-.....+++.|.+..|+... .. +.|..++
T Consensus 109 ~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 109 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 444433344567888875554 45555678899999876543333433445678999999666555544 34 7899999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC
Q 003445 172 LTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (819)
Q Consensus 172 l~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs-~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (819)
+........+...-.....++|+|++..|+.+. ..+.|..+|+........+.........+++. + ..|+.+..+
T Consensus 189 ~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~-~~ly~td~~ 264 (349)
T 3v64_C 189 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-E-DSLYWTDWH 264 (349)
T ss_dssp TTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-T-TEEEEEETT
T ss_pred CCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-C-CEEEEecCC
Confidence 874433222222334578999998766655554 56789999987543333333333456777773 3 345544433
No 271
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.36 E-value=0.00024 Score=78.66 Aligned_cols=231 Identities=10% Similarity=0.027 Sum_probs=146.2
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEE-EEECCCcEEEEECCCCeEEEEEec
Q 003445 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFA-SGSLDTNLKIWDIRKKGCIHTYKG 141 (819)
Q Consensus 63 ~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~La-sgs~Dg~I~IwDi~t~~~i~~~~~ 141 (819)
.|.+..+ ..+|+.+ ....|+.+++........+. .......++|.+.+..|+ +-...+.|+.|++........+..
T Consensus 80 ~C~~~~~-~~~l~~~-~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 80 SCKALGP-EPVLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp CEEECSS-CCEEEEE-CBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred eECCccc-cceeEee-cCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 3444444 3344443 34678889988766554444 344578999998665554 444678899999987654444433
Q ss_pred CCCCeEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE-CC-CeEEEEECCCCe
Q 003445 142 HTRGVNAIRFTPDGRWVV-SGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS-AD-RTVKFWDLETFE 218 (819)
Q Consensus 142 h~~~I~sl~fspdg~~L~-sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs-~D-g~I~iwDl~~~~ 218 (819)
.......+++.+.+..|+ +-...+.|.++++........+...-.....++++|.+..|+... .. +.|..+++....
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 236 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence 333456788887555554 445567899999875543333333345678999999766555554 34 689999887544
Q ss_pred EEEEeCCCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEEe
Q 003445 219 LIGSAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 296 (819)
Q Consensus 219 ~l~~~~~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~l 296 (819)
........-.....|+|+|++..|+.+... .|..++++.......+......-..+.+.++.++.+.+..+.|..++.
T Consensus 237 ~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 237 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANK 316 (386)
T ss_dssp CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEEC
Confidence 333333334557899999988888877554 377777665433333333333334555566677777777788877773
No 272
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.34 E-value=0.00087 Score=71.88 Aligned_cols=209 Identities=10% Similarity=0.015 Sum_probs=133.0
Q ss_pred ccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC----CceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEEC
Q 003445 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK----PNAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDL 88 (819)
Q Consensus 14 ~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~----~~~i~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWDl 88 (819)
.....+..++|++.++.++++-..++.|..+++.. ......+...-.....+++++.+. ++++-...+.|.++++
T Consensus 27 ~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~ 106 (316)
T 1ijq_A 27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 106 (316)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeC
Confidence 34456789999987777777777789999999865 222222332334568899987554 4455456789999998
Q ss_pred CCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECC--CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCC
Q 003445 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD--TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDN 165 (819)
Q Consensus 89 ~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~D--g~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs-~Dg 165 (819)
........+.........+++.|.+..|+.+... +.|..+++............-.....+++++++..|+.+. ..+
T Consensus 107 ~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~ 186 (316)
T 1ijq_A 107 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 186 (316)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCC
Confidence 7654433343334567899999977665555543 6888888864433222222335678999999877776665 457
Q ss_pred eEEEEECCCCeEEEEEec--CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 003445 166 TVKLWDLTAGKLLHDFKC--HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA 223 (819)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~--h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~ 223 (819)
.|..+|+........... .......+++. .+.++++-...+.|..+|..+++.+..+
T Consensus 187 ~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 187 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred eEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 899999874332222221 22345677775 3555566556778888887666544443
No 273
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.33 E-value=0.00013 Score=76.13 Aligned_cols=200 Identities=14% Similarity=0.253 Sum_probs=134.6
Q ss_pred EecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEc-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECC
Q 003445 54 SLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVRTLT-GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR 131 (819)
Q Consensus 54 ~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWDl~s~~~i~~l~-~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~ 131 (819)
.+.+-...+..++|+|++. ++++...++.|...|.. ++.++.+. +.......|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4556667899999999765 55557788999999998 88888774 223567889999888776766567889999886
Q ss_pred CCeE---EEEEe------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC---CCeEEEEEe-------cCCCCeEEEE
Q 003445 132 KKGC---IHTYK------GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT---AGKLLHDFK-------CHEGQIQCID 192 (819)
Q Consensus 132 t~~~---i~~~~------~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~---t~~~i~~~~-------~h~~~I~sl~ 192 (819)
.... +.... ..+.....++|+|.++.|+++.......+|.+. ....+..+. .+...+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5442 22222 134457899999999888877766544444443 111122221 1234578999
Q ss_pred EeCC-CCEEEEEECCCeEEEEECCCCeEEEEeCCCC---------CCeeEEEEeCCCCEEEEEECCCEEEEEecC
Q 003445 193 FHPH-EFLLATGSADRTVKFWDLETFELIGSAGPET---------SGVRCLTFNPDGRTLLCGLHESLKVFSWEP 257 (819)
Q Consensus 193 fspd-g~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~---------~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~ 257 (819)
++|. +.+++.....+.|..+|.+ ++.+..+.-.. ...-.|+|.++|++.+++ ... .+|-+..
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs-E~n-~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS-EPN-RFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE-TTT-EEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc-CCc-eEEEEEe
Confidence 9996 5566666677889999976 55555543221 256899999999866664 443 5555543
No 274
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.31 E-value=0.00022 Score=78.93 Aligned_cols=209 Identities=10% Similarity=-0.019 Sum_probs=137.0
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCE-EEEEECCCeEEEEECCCCeE
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVL-VAAGAASGTIKLWDLEEAKI 93 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~-Lasgs~DG~I~IWDl~s~~~ 93 (819)
....+..++|.+.++.++++-...+.|..|++........+.........+++.+.+.. +++-...+.|.++++.....
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~ 193 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 193 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce
Confidence 34567889999877777777777889999998765544444433345678899875554 44545567899998875543
Q ss_pred EEEEcCCCCCeEEEEEecCCCEEEEEEC-C-CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEE
Q 003445 94 VRTLTGHRSNCISVDFHPFGEFFASGSL-D-TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLW 170 (819)
Q Consensus 94 i~~l~~h~~~I~sl~fsp~g~~Lasgs~-D-g~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs-~Dg~I~Iw 170 (819)
...+.........+++.|.+.+|+.... . +.|..+++............-.....|+|+|++..|+.+. ..+.|..+
T Consensus 194 ~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~ 273 (386)
T 3v65_B 194 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 273 (386)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence 3334444456789999987766555543 3 6788888875443333333344578999998776666554 45789999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeC
Q 003445 171 DLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG 224 (819)
Q Consensus 171 Dl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~ 224 (819)
|+........+.........+++ ..+.++++-...+.|..+|..+++.+..+.
T Consensus 274 d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 274 NLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp CTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 98754433333333445677877 345566666667788888866665544443
No 275
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.30 E-value=0.00093 Score=74.35 Aligned_cols=226 Identities=8% Similarity=-0.034 Sum_probs=145.6
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEE-ECCCcEEEEECCCC----eEEEEEecCCCCeE
Q 003445 73 LVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASG-SLDTNLKIWDIRKK----GCIHTYKGHTRGVN 147 (819)
Q Consensus 73 ~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasg-s~Dg~I~IwDi~t~----~~i~~~~~h~~~I~ 147 (819)
+|+.+. ...|+..++........+. ....+..++|++.+..|+.+ ...+.|+.+++... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 454443 5789999998766554444 45678899999866655554 45688999998752 22333333445678
Q ss_pred EEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeEEEEeC
Q 003445 148 AIRFTPD-GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA--DRTVKFWDLETFELIGSAG 224 (819)
Q Consensus 148 sl~fspd-g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~--Dg~I~iwDl~~~~~l~~~~ 224 (819)
.+++.+. ++++++-...+.|.+.|+........+.........|+++|.+.+|+.... .+.|...++..........
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 8999884 444445556789999998866544444434456789999997666665543 3789999987544333333
Q ss_pred CCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecCCceeeeeec--cccceeEeEecCCCEEEEEEcCCeEEEEEecCCc
Q 003445 225 PETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDV--GWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISR 300 (819)
Q Consensus 225 ~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~~~~~~~--~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~ 300 (819)
..-.....|++++++..|+.+... .|..++++......++.. ....-..+.+.++.++.+.+..+.|..++...++
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCC
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCC
Confidence 334567999999988888887554 477788765444333332 2333345555666676777777788777744443
No 276
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.29 E-value=0.00058 Score=72.63 Aligned_cols=201 Identities=9% Similarity=0.000 Sum_probs=123.5
Q ss_pred ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCC--cEEE
Q 003445 50 NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT--NLKI 127 (819)
Q Consensus 50 ~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg--~I~I 127 (819)
+.+..+.. ......++|+++++++++-..++.|..||.... ....+. .......+++.++|+++++..... .|..
T Consensus 23 ~~~~~~p~-~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 23 KIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred eEeEeCCC-CCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 34445543 256789999999997777667899999998754 333333 235688999999999666554332 4777
Q ss_pred EECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-EEEEec---------CCCCeEEEEEeCC
Q 003445 128 WDIRKKGCIHTYKG-HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL-LHDFKC---------HEGQIQCIDFHPH 196 (819)
Q Consensus 128 wDi~t~~~i~~~~~-h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~-i~~~~~---------h~~~I~sl~fspd 196 (819)
+|..+++....... .......++..+++..+++-..++.|+++|...++. +..... .-...+.+ +|+
T Consensus 100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~d 177 (306)
T 2p4o_A 100 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRF 177 (306)
T ss_dssp EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEE
T ss_pred EcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcC
Confidence 78777765433321 223345566555554444444589999999876532 221110 11234555 788
Q ss_pred CCEEEEE-ECCCeEEEEECCC-CeE--EEEeCCCCCCeeEEEEeCCCCEEEEEEC-CCEEEEEec
Q 003445 197 EFLLATG-SADRTVKFWDLET-FEL--IGSAGPETSGVRCLTFNPDGRTLLCGLH-ESLKVFSWE 256 (819)
Q Consensus 197 g~~Lasg-s~Dg~I~iwDl~~-~~~--l~~~~~~~~~I~sl~fspdg~~Lasgs~-d~I~Vwd~~ 256 (819)
+.+|+.+ ...+.|..||+.. ++. ...+.. ......++++++|+++++... +.|.+|+.+
T Consensus 178 g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 178 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 8766555 4567999999874 321 111110 134577999999987555443 467777754
No 277
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.28 E-value=5.3e-05 Score=91.51 Aligned_cols=192 Identities=10% Similarity=0.016 Sum_probs=114.7
Q ss_pred CEEEEEEe-eCCCcEEEEEeCCC----eEEEEECCCC-ceEE-EecCCCCCeEEEEEcCCCCEEEEEECC-----CeEEE
Q 003445 18 TVNCLKIG-RKSSRVLVTGGEDH----KVNLWAIGKP-NAIL-SLSGHTSGIDSVSFDSSEVLVAAGAAS-----GTIKL 85 (819)
Q Consensus 18 ~V~~lafs-p~~~~~Latgs~Dg----~V~IWdl~~~-~~i~-~l~~h~~~V~~l~fspdg~~Lasgs~D-----G~I~I 85 (819)
.+...+|+ |++..++++...+| .|+++|+.++ +.+. .+. .....+.|+||++.|+....+ ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 96555555555443 4999999888 5321 111 113468899999877776665 36888
Q ss_pred EECCCCe--EEEEEc-CCCCCeEEEEEecCCCEEEEEEC---CCcEEEEECCCC--eE--EEEEecCCCCeEEEEEcCCC
Q 003445 86 WDLEEAK--IVRTLT-GHRSNCISVDFHPFGEFFASGSL---DTNLKIWDIRKK--GC--IHTYKGHTRGVNAIRFTPDG 155 (819)
Q Consensus 86 WDl~s~~--~i~~l~-~h~~~I~sl~fsp~g~~Lasgs~---Dg~I~IwDi~t~--~~--i~~~~~h~~~I~sl~fspdg 155 (819)
|++.++. ....+. ........+.|+|+|++|+..+. ...|+++|+.++ .. .............+.|+. |
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 9988763 222332 23345678899999998887653 346888999875 23 222233344556666554 5
Q ss_pred CEEEEEE-CC----CeEEEEECCCCeEEEE-EecCCC--CeEEEEEeCCCCEEEEEECCCe--EEEEEC
Q 003445 156 RWVVSGG-ED----NTVKLWDLTAGKLLHD-FKCHEG--QIQCIDFHPHEFLLATGSADRT--VKFWDL 214 (819)
Q Consensus 156 ~~L~sgs-~D----g~I~IwDl~t~~~i~~-~~~h~~--~I~sl~fspdg~~Lasgs~Dg~--I~iwDl 214 (819)
..|+..+ .+ ..|..+|+.++..... +..+.. .+..+.+. .+.++++...++. |+++|+
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 5555444 33 3688888875311122 222333 34455554 3445566666775 566675
No 278
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.26 E-value=0.0012 Score=73.30 Aligned_cols=222 Identities=9% Similarity=0.012 Sum_probs=142.8
Q ss_pred EeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC----ceEEEecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEE
Q 003445 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----NAILSLSGHTSGIDSVSFDSS-EVLVAAGAASGTIKLW 86 (819)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~----~~i~~l~~h~~~V~~l~fspd-g~~Lasgs~DG~I~IW 86 (819)
+......+..++|++.++.++++-...+.|+.+++... .....+...-.....+++.+. +.++++-...+.|.+.
T Consensus 107 ~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~ 186 (400)
T 3p5b_L 107 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 186 (400)
T ss_dssp EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEE
Confidence 33455678999999877777777677888999988642 233333434457889999884 4455555567899999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-C
Q 003445 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL--DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-E 163 (819)
Q Consensus 87 Dl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~--Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs-~ 163 (819)
+++.......+.........|++.|.+.+|+.... .+.|...++............-.....|++++++..|+.+. .
T Consensus 187 ~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~ 266 (400)
T 3p5b_L 187 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK 266 (400)
T ss_dssp CTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred eCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECC
Confidence 98866554444444456789999997766665553 37899999875544333333335678999998877777665 4
Q ss_pred CCeEEEEECCCCeEEEEEec--CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEE
Q 003445 164 DNTVKLWDLTAGKLLHDFKC--HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLT 234 (819)
Q Consensus 164 Dg~I~IwDl~t~~~i~~~~~--h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~ 234 (819)
.+.|..+|+........... .-.....+++. .+.++++-...+.|..+|..+++.+..+.........+.
T Consensus 267 ~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 267 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp TTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred CCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence 57899999875433322222 22345667763 344555555667888888777765555543333344443
No 279
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.21 E-value=0.00038 Score=78.30 Aligned_cols=234 Identities=12% Similarity=0.118 Sum_probs=138.7
Q ss_pred CEEEEEEee-CCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC-C----eEEEEECCCC
Q 003445 18 TVNCLKIGR-KSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS-G----TIKLWDLEEA 91 (819)
Q Consensus 18 ~V~~lafsp-~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D-G----~I~IWDl~s~ 91 (819)
....|+|+| +++. |+.+...+.|+.+|+..+...... ........++|++++++|+++... + .+.+++.. +
T Consensus 138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-S 214 (430)
T ss_dssp CCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred CCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-C
Confidence 567899997 3455 555544488999998766544433 345678999999999966666542 2 23334432 2
Q ss_pred eEE--EEEcCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCCe
Q 003445 92 KIV--RTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYKG-HTRGVNAIRFTPDGRWVVSGG-EDNT 166 (819)
Q Consensus 92 ~~i--~~l~~h~~~I~sl~fsp-~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~-h~~~I~sl~fspdg~~L~sgs-~Dg~ 166 (819)
... ..+.. ......++++| ++.++++-..++.|+.|+...+........ ....-..++|+|+|++|+.+. ..+.
T Consensus 215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 111 22221 23345788999 666666666778999999987764322221 223467899999999655554 5678
Q ss_pred EEEEECCC--CeE--EEEEecC---------------CCCeE-EEEEe--------CCCCEEEEEECCCeEEEEECCCCe
Q 003445 167 VKLWDLTA--GKL--LHDFKCH---------------EGQIQ-CIDFH--------PHEFLLATGSADRTVKFWDLETFE 218 (819)
Q Consensus 167 I~IwDl~t--~~~--i~~~~~h---------------~~~I~-sl~fs--------pdg~~Lasgs~Dg~I~iwDl~~~~ 218 (819)
|..++... ++. +..+.+. -.... .++.. ++|.++++-...+.|+.++ .++.
T Consensus 294 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~ 372 (430)
T 3tc9_A 294 ILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGR 372 (430)
T ss_dssp EEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSE
T ss_pred EEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCc
Confidence 99987653 222 1222211 01123 45543 3456666656677899988 4565
Q ss_pred EEEEeCC----C-------------CCCeeEEEEeCCCCEEEEEECC--CEEEEEec
Q 003445 219 LIGSAGP----E-------------TSGVRCLTFNPDGRTLLCGLHE--SLKVFSWE 256 (819)
Q Consensus 219 ~l~~~~~----~-------------~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~ 256 (819)
....... . -.....+++++++..|+++..+ .|+.++.+
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 4433321 0 1147899999964555555433 46666543
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.16 E-value=0.00048 Score=77.61 Aligned_cols=235 Identities=11% Similarity=0.050 Sum_probs=139.4
Q ss_pred CCEEEEEEeeC--CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECC
Q 003445 17 STVNCLKIGRK--SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASG-----TIKLWDLE 89 (819)
Q Consensus 17 ~~V~~lafsp~--~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG-----~I~IWDl~ 89 (819)
....+++|+|+ ++. |+.+...+.|+.++..++..... ........+++|+++++++++ ...+ .+..++..
T Consensus 139 ~~P~gvavd~~s~~g~-Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVa-d~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDD-LYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVV-DDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp SCCCEEEECTTTTTCE-EEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEE-ECCSCTTSEEEEEECGG
T ss_pred CCCceEEEccccCCCE-EEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEE-cCCCCcccceEEEEECC
Confidence 34678999984 455 55554448899999877665544 334556899999999994444 4322 23333322
Q ss_pred CCeE-EEEEcCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeEEEEE-ec-CCCCeEEEEEcCCCCEEEEEE-CC
Q 003445 90 EAKI-VRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTY-KG-HTRGVNAIRFTPDGRWVVSGG-ED 164 (819)
Q Consensus 90 s~~~-i~~l~~h~~~I~sl~fsp-~g~~Lasgs~Dg~I~IwDi~t~~~i~~~-~~-h~~~I~sl~fspdg~~L~sgs-~D 164 (819)
.+.. ...+. .......++++| ++.++++-..++.|+.+|..++.....+ .. ....-..++|+|+|++|+.+. ..
T Consensus 216 ~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 216 SGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK 294 (433)
T ss_dssp GTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred CCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence 2111 01111 123345688999 6666666556788999999877652332 21 122234799999999666554 46
Q ss_pred CeEEEEECC--CCeE--EEEEecC---------------CCCeEEEEE---------eCCCCEEEEEECCCeEEEEECCC
Q 003445 165 NTVKLWDLT--AGKL--LHDFKCH---------------EGQIQCIDF---------HPHEFLLATGSADRTVKFWDLET 216 (819)
Q Consensus 165 g~I~IwDl~--t~~~--i~~~~~h---------------~~~I~sl~f---------spdg~~Lasgs~Dg~I~iwDl~~ 216 (819)
+.|+.+|.. ++.. ...+.+. -.....+++ .++|.++++-...+.|+.++. +
T Consensus 295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~ 373 (433)
T 4hw6_A 295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-E 373 (433)
T ss_dssp TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-T
T ss_pred CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-C
Confidence 789998865 3321 1122211 123567899 677777777777789999985 5
Q ss_pred CeEEEEeCCC-----------------CCCeeEEEEe-CCCCEEEEEECC-CEEEEEec
Q 003445 217 FELIGSAGPE-----------------TSGVRCLTFN-PDGRTLLCGLHE-SLKVFSWE 256 (819)
Q Consensus 217 ~~~l~~~~~~-----------------~~~I~sl~fs-pdg~~Lasgs~d-~I~Vwd~~ 256 (819)
+......... -.....|+++ ++|.++++-..+ .|+.++.+
T Consensus 374 G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 374 GRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp SEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 5544333211 1236789999 555444443332 46666553
No 281
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.15 E-value=0.00083 Score=72.36 Aligned_cols=222 Identities=11% Similarity=0.025 Sum_probs=136.9
Q ss_pred CCCeEEEEECCCCe--EEEEEcCCCCCeEEEEEecCCCE-EEEEECCCcEEEEECCCCeEE-EEEecCCCCeEEEEEcCC
Q 003445 79 ASGTIKLWDLEEAK--IVRTLTGHRSNCISVDFHPFGEF-FASGSLDTNLKIWDIRKKGCI-HTYKGHTRGVNAIRFTPD 154 (819)
Q Consensus 79 ~DG~I~IWDl~s~~--~i~~l~~h~~~I~sl~fsp~g~~-Lasgs~Dg~I~IwDi~t~~~i-~~~~~h~~~I~sl~fspd 154 (819)
....|+.+|+.... ....+. .......++|.+.+.. +++-...+.|+.+++...... ..+...-.....+++.+.
T Consensus 11 ~~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~ 89 (318)
T 3sov_A 11 NRRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL 89 (318)
T ss_dssp CEEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT
T ss_pred ccCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC
Confidence 35679999998653 222222 2235678999986554 455556788999998765321 122222234668899875
Q ss_pred CCEE-EEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeEEEEeCCCCCCee
Q 003445 155 GRWV-VSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA--DRTVKFWDLETFELIGSAGPETSGVR 231 (819)
Q Consensus 155 g~~L-~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~--Dg~I~iwDl~~~~~l~~~~~~~~~I~ 231 (819)
+..| ++-...+.|.++++........+.........++++|.+..|+.... .+.|..+++............-....
T Consensus 90 ~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pn 169 (318)
T 3sov_A 90 GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPN 169 (318)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEE
T ss_pred CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCcc
Confidence 4444 45556789999998754333333334456789999997666666553 57899998874332222233334578
Q ss_pred EEEEeCCCCEEEEEECC--CEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEEecCCce
Q 003445 232 CLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRI 301 (819)
Q Consensus 232 sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~ 301 (819)
.|+|++++..|+.+... .|..++++.......+......-..+.+.++.++.+-...+.|..++...++.
T Consensus 170 glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 170 GLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCc
Confidence 99999988888877554 47777776533333333223333445555666666666777888887755544
No 282
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.08 E-value=0.0011 Score=71.54 Aligned_cols=205 Identities=8% Similarity=-0.017 Sum_probs=132.3
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce-EEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEE
Q 003445 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA-ILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVR 95 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~-i~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWDl~s~~~i~ 95 (819)
.+..++|.+.++.++++-...+.|..++...... ...+...-.....+++.+.+. ++++-...+.|.++++.......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 4678899987777777777788999999865532 122222234567899987544 55555567899999987544333
Q ss_pred EEcCCCCCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEC
Q 003445 96 TLTGHRSNCISVDFHPFGEFFASGSL--DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLWDL 172 (819)
Q Consensus 96 ~l~~h~~~I~sl~fsp~g~~Lasgs~--Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs-~Dg~I~IwDl 172 (819)
.+.........+++.|.+.+|+.+.. .+.|..+++............-..-..++|++++..|+.+. ..+.|..+|+
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~ 195 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 195 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence 33344456789999987666666553 57888888864433222232334568999999777666654 4678999998
Q ss_pred CCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 003445 173 TAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA 223 (819)
Q Consensus 173 ~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~ 223 (819)
..................+++. .+.++++-...+.|..+|..+++....+
T Consensus 196 dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 196 DGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp TSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEE
Confidence 7443322233234456677775 3445555556778888888776654443
No 283
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.03 E-value=0.005 Score=74.44 Aligned_cols=226 Identities=9% Similarity=-0.031 Sum_probs=142.1
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEE-EEECCCcEEEEECCCC----eEEEEEecCCCCeE
Q 003445 73 LVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFA-SGSLDTNLKIWDIRKK----GCIHTYKGHTRGVN 147 (819)
Q Consensus 73 ~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~La-sgs~Dg~I~IwDi~t~----~~i~~~~~h~~~I~ 147 (819)
+|+.. ....|+..++........+. ....+..|+|.+....|+ +-...+.|+.+++... .....+........
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 44443 45668888887665544444 455678999998655544 4445678999998753 22233333345567
Q ss_pred EEEEcCCCCEEEE-EECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC-C-CeEEEEECCCCeEEEEeC
Q 003445 148 AIRFTPDGRWVVS-GGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA-D-RTVKFWDLETFELIGSAG 224 (819)
Q Consensus 148 sl~fspdg~~L~s-gs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~-D-g~I~iwDl~~~~~l~~~~ 224 (819)
.|++.+.++.|+. -...+.|.+.++........+.........|+++|.+.+|+.... + +.|...++........+.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 8999887755554 445789999999865544444434456889999998666665543 3 689999987655544444
Q ss_pred CCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecCCceeeeeec--cccceeEeEecCCCEEEEEEcCCeEEEEEecCCc
Q 003445 225 PETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDV--GWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISR 300 (819)
Q Consensus 225 ~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~~~~~~~--~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~ 300 (819)
..-.....|++++.+..|+++..+ .|..++++......++.. .+..-..+...++.++.+-+..+.|...+..+++
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCc
Confidence 444678999999888888877554 477777765544444432 2333344555555555565566666666644443
No 284
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.02 E-value=3.6e-05 Score=91.44 Aligned_cols=239 Identities=11% Similarity=0.110 Sum_probs=139.0
Q ss_pred EEEEcC-CCCEEEEEECCC-----------eEEEEECCCCeE--EEEEc-CCCCCeEEEEEecCCCEEEEEEC-CCcEEE
Q 003445 64 SVSFDS-SEVLVAAGAASG-----------TIKLWDLEEAKI--VRTLT-GHRSNCISVDFHPFGEFFASGSL-DTNLKI 127 (819)
Q Consensus 64 ~l~fsp-dg~~Lasgs~DG-----------~I~IWDl~s~~~--i~~l~-~h~~~I~sl~fsp~g~~Lasgs~-Dg~I~I 127 (819)
++++.+ ++++++.|+.++ .+.+||+.+++. +..+. .+...+.++++..++..+++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566667 888888887643 688999987753 22332 23344556788889999999884 458999
Q ss_pred EECCCCeEEEEEecCC-CCeEEEEEcCCCCEEEEEE-CC-----CeEEEEECCCCeEEEEE----ecCCCCeEEEEEeCC
Q 003445 128 WDIRKKGCIHTYKGHT-RGVNAIRFTPDGRWVVSGG-ED-----NTVKLWDLTAGKLLHDF----KCHEGQIQCIDFHPH 196 (819)
Q Consensus 128 wDi~t~~~i~~~~~h~-~~I~sl~fspdg~~L~sgs-~D-----g~I~IwDl~t~~~i~~~----~~h~~~I~sl~fspd 196 (819)
||..+.+....-..+. ..-.++++.++|+.++.|+ .+ ..+.+||..+++....- ......-....+..+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 9998776443322121 1224556677999999998 34 46999999887643320 000000000112244
Q ss_pred CCEEEEEECC---------CeEEEEECCCCeEEEEeCCC---------CCCeeEEEEeC-CCCEEEEEECC---------
Q 003445 197 EFLLATGSAD---------RTVKFWDLETFELIGSAGPE---------TSGVRCLTFNP-DGRTLLCGLHE--------- 248 (819)
Q Consensus 197 g~~Lasgs~D---------g~I~iwDl~~~~~l~~~~~~---------~~~I~sl~fsp-dg~~Lasgs~d--------- 248 (819)
+..++.|+.+ ..+..||..+.......... ...-.++.|.. +++++++|+.+
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~ 429 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT 429 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence 5555555544 35778888776543322211 11224455543 67777777531
Q ss_pred ---CEEEEEecCCceeeee--eccccc--eeEeEecCCCEEEEEEcC-----------CeEEEEEecCCcee
Q 003445 249 ---SLKVFSWEPIRCHDAV--DVGWSR--LSDLNVHEGKLLGCSYNQ-----------SCVGVWVVDISRIE 302 (819)
Q Consensus 249 ---~I~Vwd~~~~~~~~~~--~~~~s~--i~~l~~~dg~lLa~~~~D-----------g~V~IW~ld~~~~~ 302 (819)
.+.+||..+....... ...... ...+..++++++++|+.+ ..+.+||..+.+-.
T Consensus 430 ~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~ 501 (656)
T 1k3i_A 430 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY 501 (656)
T ss_dssp CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE
T ss_pred cceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee
Confidence 2445554444433322 222222 222344699999998754 46888988776544
No 285
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.99 E-value=0.0014 Score=71.03 Aligned_cols=190 Identities=15% Similarity=0.270 Sum_probs=129.9
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecC----CC---EEEEEEC---CCcEEEEECC--CCeEEE
Q 003445 70 SEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPF----GE---FFASGSL---DTNLKIWDIR--KKGCIH 137 (819)
Q Consensus 70 dg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~----g~---~Lasgs~---Dg~I~IwDi~--t~~~i~ 137 (819)
...+++.....+-+.+||+ +|+.++.+.. +.+..+..-|. |+ ++++... +++|.+|++. ++. +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 4456777777889999999 8999988864 56777777662 22 2333333 4789999773 333 44
Q ss_pred EEec------CC-CCeEEEEE--cCC-CC-EEEEEECCCeEEEEECC-------CCeEEEEEecCCCCeEEEEEeCCCCE
Q 003445 138 TYKG------HT-RGVNAIRF--TPD-GR-WVVSGGEDNTVKLWDLT-------AGKLLHDFKCHEGQIQCIDFHPHEFL 199 (819)
Q Consensus 138 ~~~~------h~-~~I~sl~f--spd-g~-~L~sgs~Dg~I~IwDl~-------t~~~i~~~~~h~~~I~sl~fspdg~~ 199 (819)
.+.. .. ..+..+|+ +|. +. ++++...+|.+..|++. +.+.+.+|.. .+.+-.+...+....
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGR 193 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCe
Confidence 4421 11 45667787 664 44 67788889999999883 3466777774 467888999998889
Q ss_pred EEEEECCCeEEEEECC-----CCeEEEEeC--CCCCCeeEEEE--eCCCC-EEEEEEC--CCEEEEEec-CCceeeee
Q 003445 200 LATGSADRTVKFWDLE-----TFELIGSAG--PETSGVRCLTF--NPDGR-TLLCGLH--ESLKVFSWE-PIRCHDAV 264 (819)
Q Consensus 200 Lasgs~Dg~I~iwDl~-----~~~~l~~~~--~~~~~I~sl~f--spdg~-~Lasgs~--d~I~Vwd~~-~~~~~~~~ 264 (819)
|+.+-++.-|+.||.+ +++.+..+. .....+..|++ .++|+ +|++++. +.+.||+.+ +.+....+
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 9999999888888865 455666553 22346888888 45666 7777764 369999986 44433333
No 286
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.95 E-value=0.0027 Score=68.32 Aligned_cols=222 Identities=11% Similarity=0.073 Sum_probs=130.7
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec---CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS---GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK 92 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~---~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~ 92 (819)
...+.++.|.+ +..++ ++.++.|.. ..+.++.-..+. .+...+..+.+.+++..++++ .+|.|..- .+.++
T Consensus 79 ~~~~~~i~~~~--~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~ 152 (327)
T 2xbg_A 79 DYRFNSVSFQG--NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGK 152 (327)
T ss_dssp CCEEEEEEEET--TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTS
T ss_pred CccEEEEEecC--CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCC
Confidence 44688999975 34444 455675544 223344333322 234567888887777666654 46654332 22233
Q ss_pred E-EEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEE-EEC--CCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003445 93 I-VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKI-WDI--RKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVK 168 (819)
Q Consensus 93 ~-i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~I-wDi--~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~ 168 (819)
. ......+...+..+.+.+++.+++++. +|.++. +|- .+.+.+. ......+..+.+.+++..+ .++.+|.++
T Consensus 153 tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~ 228 (327)
T 2xbg_A 153 NWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIA 228 (327)
T ss_dssp SEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEE
T ss_pred CCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEE
Confidence 2 222344566789999999888777664 455544 442 2333332 2345678899999988755 555788888
Q ss_pred EEECCCCeEEEEEec----CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeC---CCCCCeeEEEEeCCCCE
Q 003445 169 LWDLTAGKLLHDFKC----HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG---PETSGVRCLTFNPDGRT 241 (819)
Q Consensus 169 IwDl~t~~~i~~~~~----h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~---~~~~~I~sl~fspdg~~ 241 (819)
+++...++.-..+.. +...+..+.+.+++.+++++. +|.| ++..+.++.-..+. .....+.++.|.+++.+
T Consensus 229 ~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~ 306 (327)
T 2xbg_A 229 FSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQG 306 (327)
T ss_dssp EEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEE
T ss_pred EecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCce
Confidence 775333443333321 123588999998887777665 6766 45555554333332 22356789999877776
Q ss_pred EEEEECCC
Q 003445 242 LLCGLHES 249 (819)
Q Consensus 242 Lasgs~d~ 249 (819)
+++|.++.
T Consensus 307 ~~~G~~G~ 314 (327)
T 2xbg_A 307 FILGQKGI 314 (327)
T ss_dssp EEECSTTE
T ss_pred EEEcCCce
Confidence 66665553
No 287
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.94 E-value=0.0025 Score=72.71 Aligned_cols=241 Identities=11% Similarity=0.094 Sum_probs=142.4
Q ss_pred CEEEEEEeeC-CCcEEEEEeCCCeEEEEECCCCceEEEecCC---CCCeEEEEE-------cCCCCEEEEEECCC-----
Q 003445 18 TVNCLKIGRK-SSRVLVTGGEDHKVNLWAIGKPNAILSLSGH---TSGIDSVSF-------DSSEVLVAAGAASG----- 81 (819)
Q Consensus 18 ~V~~lafsp~-~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h---~~~V~~l~f-------spdg~~Lasgs~DG----- 81 (819)
....|+|+|. .++++++....+.|++.|..++.....+..- ......++| +++++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678999983 5666666555577888898776665544432 235899999 99999666666554
Q ss_pred --eEEEEECCC-CeEE-----EEEcCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECC-------CCeE----------
Q 003445 82 --TIKLWDLEE-AKIV-----RTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIR-------KKGC---------- 135 (819)
Q Consensus 82 --~I~IWDl~s-~~~i-----~~l~~h~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~-------t~~~---------- 135 (819)
.|.+++... +... ..+... .....++++|++ .++++-..++.|+.+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266665433 1211 122111 234567889954 455555577889999987 4443
Q ss_pred -EEE-Ee-cCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEEC--CCCeE--EEEEecC---C------------CCeE-EE
Q 003445 136 -IHT-YK-GHTRGVNAIRFTPDGRWVVSG-GEDNTVKLWDL--TAGKL--LHDFKCH---E------------GQIQ-CI 191 (819)
Q Consensus 136 -i~~-~~-~h~~~I~sl~fspdg~~L~sg-s~Dg~I~IwDl--~t~~~--i~~~~~h---~------------~~I~-sl 191 (819)
... +. .....-..|+|+|+|++|+.+ ...+.|+.+|. .++.. ...+-+. . .... .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 112 22 123445799999999965555 45678888654 33332 0222221 1 1234 44
Q ss_pred EEe-------CCCCEEEEEECCCeEEEEECCCCeEEEEeCC-------------C----------CCCeeEEEEeCC-CC
Q 003445 192 DFH-------PHEFLLATGSADRTVKFWDLETFELIGSAGP-------------E----------TSGVRCLTFNPD-GR 240 (819)
Q Consensus 192 ~fs-------pdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~-------------~----------~~~I~sl~fspd-g~ 240 (819)
+.. +++.++++=..+..|+.++ .++........ . -.....|+++++ |.
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~ 457 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEM 457 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTE
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCE
Confidence 554 4566666666788999998 45543322211 0 123678999997 55
Q ss_pred EEEEEECC-CEEEEEecCCce
Q 003445 241 TLLCGLHE-SLKVFSWEPIRC 260 (819)
Q Consensus 241 ~Lasgs~d-~I~Vwd~~~~~~ 260 (819)
++++-..+ .|+.++.+...+
T Consensus 458 lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 458 FYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp EEEEETTTTEEEEEEECCCC-
T ss_pred EEEEeCCCCEEEEEECCCCcc
Confidence 44443333 588888776544
No 288
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.94 E-value=0.0024 Score=71.72 Aligned_cols=152 Identities=16% Similarity=0.130 Sum_probs=101.0
Q ss_pred CeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECC-C----cEEEEECCCCe
Q 003445 61 GIDSVSFDS-SEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD-T----NLKIWDIRKKG 134 (819)
Q Consensus 61 ~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~D-g----~I~IwDi~t~~ 134 (819)
....++|+| ++..|+++...+.|..+|+..+....... .......++|++++++|+++... + .+.+++.. +.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence 457899998 45566666655889999998776554443 45567899999999966666542 2 34444432 22
Q ss_pred EE--EEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEec-CCCCeEEEEEeCCCCEEEEE-ECCCeE
Q 003445 135 CI--HTYKGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGKLLHDFKC-HEGQIQCIDFHPHEFLLATG-SADRTV 209 (819)
Q Consensus 135 ~i--~~~~~h~~~I~sl~fsp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~-h~~~I~sl~fspdg~~Lasg-s~Dg~I 209 (819)
.. ..+.. ......++++| +|.++++-..++.|..||...+.....+.. .......++|+|+|++|+.. ...+.|
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 11 22222 23456788999 677666666778999999987765333322 22346889999999955554 467789
Q ss_pred EEEECC
Q 003445 210 KFWDLE 215 (819)
Q Consensus 210 ~iwDl~ 215 (819)
..|+..
T Consensus 295 ~~~~~d 300 (430)
T 3tc9_A 295 LRSDYD 300 (430)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 998765
No 289
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.93 E-value=0.011 Score=69.71 Aligned_cols=202 Identities=7% Similarity=-0.026 Sum_probs=123.2
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce-EEEecCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCeE
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA-ILSLSGHTSGIDSVSFDSSEVLV-AAGAASGTIKLWDLEEAKI 93 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~-i~~l~~h~~~V~~l~fspdg~~L-asgs~DG~I~IWDl~s~~~ 93 (819)
-..+..++|++.++.++++-...+.|..+++..... ...+...-.....+++++.+..| ++-...+.|.+.++.....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 456789999987777666666678899888865432 22333333578999999865544 4445578999999875543
Q ss_pred EEEEcCCCCCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEE
Q 003445 94 VRTLTGHRSNCISVDFHPFGEFFASGSL--DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLW 170 (819)
Q Consensus 94 i~~l~~h~~~I~sl~fsp~g~~Lasgs~--Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs-~Dg~I~Iw 170 (819)
...+...-..-..|++.|.+.+|+.... .+.|...++............-.....|++++++..|+.+. ..+.|..+
T Consensus 119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~ 198 (619)
T 3s94_A 119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 198 (619)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence 3333334445678999997666655553 36777777764433333333345678999999766666654 45679999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe
Q 003445 171 DLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE 218 (819)
Q Consensus 171 Dl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~ 218 (819)
|+..................+++..+ .++++-...+.|...|..+++
T Consensus 199 ~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 199 NLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp SSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred cCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence 98754332222211222345666555 444444456788888887664
No 290
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.88 E-value=0.0091 Score=72.16 Aligned_cols=214 Identities=8% Similarity=-0.052 Sum_probs=131.6
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEE-EEECCCeEEEEECCCC----eEEEEEcCCCCCeE
Q 003445 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVA-AGAASGTIKLWDLEEA----KIVRTLTGHRSNCI 105 (819)
Q Consensus 31 ~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~La-sgs~DG~I~IWDl~s~----~~i~~l~~h~~~I~ 105 (819)
+|+.+. ...|+..++........+. ....+..|+|++.+..|+ +-...+.|+.+++... .....+........
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred cccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 344333 3558888876655544444 456678999998555544 4445688999998753 22333333344566
Q ss_pred EEEEecCCCE-EEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEEe
Q 003445 106 SVDFHPFGEF-FASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE--DNTVKLWDLTAGKLLHDFK 182 (819)
Q Consensus 106 sl~fsp~g~~-Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~--Dg~I~IwDl~t~~~i~~~~ 182 (819)
.|++.+.+.. +++-...+.|.+.++........+.........|++.|.+.+|+.+.. .+.|...++........+.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 7888877754 445556789999999865544444444456889999997666666553 2789999987554444344
Q ss_pred cCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCeEEEEeCC--CCCCeeEEEEeCCCCEEEEEECC
Q 003445 183 CHEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLETFELIGSAGP--ETSGVRCLTFNPDGRTLLCGLHE 248 (819)
Q Consensus 183 ~h~~~I~sl~fspdg~~Lasgs-~Dg~I~iwDl~~~~~l~~~~~--~~~~I~sl~fspdg~~Lasgs~d 248 (819)
..-.....|++++.+..|+.+. ..+.|..+++........+.. .-.....|++. +..|++....
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~ 621 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDII 621 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETT
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECC
Confidence 3345688999998766666654 456899999875443333222 12233455553 3456655444
No 291
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.83 E-value=0.0052 Score=67.00 Aligned_cols=230 Identities=15% Similarity=0.150 Sum_probs=129.9
Q ss_pred ceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce--EEEec---CCCCCeEEEEEcCC---CCEEEEEE
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA--ILSLS---GHTSGIDSVSFDSS---EVLVAAGA 78 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~--i~~l~---~h~~~V~~l~fspd---g~~Lasgs 78 (819)
+++..+...-..-+.++|.| +++++ ++..+|.|.+++ +++. +..+. ........|+|+|+ +..|+++.
T Consensus 21 ~~~~~va~~l~~P~~ia~~p-dG~l~-V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~ 96 (352)
T 2ism_A 21 LRVEEVVGGLEVPWALAFLP-DGGML-IAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYR 96 (352)
T ss_dssp CCEEEEECCCSCEEEEEECT-TSCEE-EEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred cEEEEEECCCCCceEEEEcC-CCeEE-EEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEE
Confidence 45566665566788999999 55544 455679999998 3432 22221 12357899999998 55554443
Q ss_pred C-C-----CeEEEEECCCCe-----EE-EEEc---CCCCCeEEEEEecCCCEEEEEEC-------------CCcEEEEEC
Q 003445 79 A-S-----GTIKLWDLEEAK-----IV-RTLT---GHRSNCISVDFHPFGEFFASGSL-------------DTNLKIWDI 130 (819)
Q Consensus 79 ~-D-----G~I~IWDl~s~~-----~i-~~l~---~h~~~I~sl~fsp~g~~Lasgs~-------------Dg~I~IwDi 130 (819)
. . +.|..|++..+. .+ ..+. +.......++|.|+|.++++.+. .|.|.-++.
T Consensus 97 ~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~ 176 (352)
T 2ism_A 97 TVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTP 176 (352)
T ss_dssp EECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECT
T ss_pred ecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcC
Confidence 3 2 678888887541 12 2233 11123468999999976665432 245666665
Q ss_pred CC--------------CeEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCe--------EEEEECCCCe-----------
Q 003445 131 RK--------------KGCIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDNT--------VKLWDLTAGK----------- 176 (819)
Q Consensus 131 ~t--------------~~~i~~~~~h~~~I~sl~fsp-dg~~L~sgs~Dg~--------I~IwDl~t~~----------- 176 (819)
.. ...+.. .++. ....++|+| +|.++++-...+. |.+. ..+.
T Consensus 177 dG~~p~~npf~~~~~~~~~i~a-~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~~ 252 (352)
T 2ism_A 177 EGEPAPGNPFLGRRGARPEVYS-LGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGRG 252 (352)
T ss_dssp TSSBCTTCTTTTCTTSCTTEEE-ECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTCBCCTTTCCSCC
T ss_pred CCCCCCCCcccCCCCCCccEEE-EcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCCC
Confidence 43 111211 2233 256789999 6665544332222 3332 2221
Q ss_pred -------EEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCe----E--EEEeCCCCCCeeEEEEeCCCCEEE
Q 003445 177 -------LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE----L--IGSAGPETSGVRCLTFNPDGRTLL 243 (819)
Q Consensus 177 -------~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~----~--l~~~~~~~~~I~sl~fspdg~~La 243 (819)
.+..+. +......++| .+|.++++....+.|...+++... . ...+-.....+..+++.|||.+++
T Consensus 253 ~~~~~~~p~~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv 330 (352)
T 2ism_A 253 NDPRYRDPLYFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYV 330 (352)
T ss_dssp CCTTSCCCSEECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEE
T ss_pred CCCCCcCCeEecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEE
Confidence 122221 2234567777 466666666666778887775432 1 112212235689999999998777
Q ss_pred EEE
Q 003445 244 CGL 246 (819)
Q Consensus 244 sgs 246 (819)
+..
T Consensus 331 ~~~ 333 (352)
T 2ism_A 331 TTS 333 (352)
T ss_dssp EEC
T ss_pred EEe
Confidence 654
No 292
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.81 E-value=0.0038 Score=67.70 Aligned_cols=190 Identities=10% Similarity=0.222 Sum_probs=129.2
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCC----CC---EEEEEEC---CCeEEEEECC--CCeEEEEE
Q 003445 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSS----EV---LVAAGAA---SGTIKLWDLE--EAKIVRTL 97 (819)
Q Consensus 30 ~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspd----g~---~Lasgs~---DG~I~IWDl~--s~~~i~~l 97 (819)
.++++....+-+.+||+ +++.+..+.. +.++.+..-|+ ++ ++++... +++|.+|++. +++ +..+
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i 116 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSM 116 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEEC
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeec
Confidence 34555667788999999 8999888864 56777776553 22 3334343 5899999773 443 4444
Q ss_pred cC------CC-CCeEEEEE--ecC-CC-EEEEEECCCcEEEEECC-------CCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 003445 98 TG------HR-SNCISVDF--HPF-GE-FFASGSLDTNLKIWDIR-------KKGCIHTYKGHTRGVNAIRFTPDGRWVV 159 (819)
Q Consensus 98 ~~------h~-~~I~sl~f--sp~-g~-~Lasgs~Dg~I~IwDi~-------t~~~i~~~~~h~~~I~sl~fspdg~~L~ 159 (819)
.. .. ..+..+|+ +|. +. ++++...+|.+..|++. +.+.++++.. .+.+..+.+.+...+|+
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLY 195 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEE
Confidence 21 11 45666777 664 44 67888889999999883 3356677764 45788999999888999
Q ss_pred EEECCCeEEEEECC-----CCeEEEEEe-cC-CCCeEEEEEe--CCCC-EEEEEE-CCCeEEEEECC-CCeEEEEeC
Q 003445 160 SGGEDNTVKLWDLT-----AGKLLHDFK-CH-EGQIQCIDFH--PHEF-LLATGS-ADRTVKFWDLE-TFELIGSAG 224 (819)
Q Consensus 160 sgs~Dg~I~IwDl~-----t~~~i~~~~-~h-~~~I~sl~fs--pdg~-~Lasgs-~Dg~I~iwDl~-~~~~l~~~~ 224 (819)
.+-++.-|..+|.. +++.+..+. ++ ...+..|++- +++. +|++++ .+.++.+||.+ +.+.+..+.
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 99998778888865 345665543 12 2367888874 4444 666666 57799999996 666666653
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.80 E-value=0.0042 Score=69.83 Aligned_cols=152 Identities=13% Similarity=0.120 Sum_probs=96.6
Q ss_pred CeEEEEEcCC--CCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCC-----cEEEEECCCC
Q 003445 61 GIDSVSFDSS--EVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT-----NLKIWDIRKK 133 (819)
Q Consensus 61 ~V~~l~fspd--g~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg-----~I~IwDi~t~ 133 (819)
....++|+++ +..|+.+...+.|+.+|+.+++..... ........++|+++|+ |+.+...+ .+..++...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 4678999984 445555554489999999888765443 3455688999999999 44444322 2333333221
Q ss_pred eE-EEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEE-ec-CCCCeEEEEEeCCCCEEEEEE-CCCe
Q 003445 134 GC-IHTYKGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGKLLHDF-KC-HEGQIQCIDFHPHEFLLATGS-ADRT 208 (819)
Q Consensus 134 ~~-i~~~~~h~~~I~sl~fsp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~-~~-h~~~I~sl~fspdg~~Lasgs-~Dg~ 208 (819)
.. ...+. .......++++| +|.++++-..++.|+.+|..++.....+ .. ....-..++|+|++++|+.+. ..+.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 11 11122 223456788999 6766666556789999999877663332 21 122335799999998555554 5678
Q ss_pred EEEEECC
Q 003445 209 VKFWDLE 215 (819)
Q Consensus 209 I~iwDl~ 215 (819)
|+.+++.
T Consensus 297 I~~~~~d 303 (433)
T 4hw6_A 297 IYRVDYN 303 (433)
T ss_dssp EEEEEBC
T ss_pred EEEEeCC
Confidence 9998865
No 294
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.79 E-value=0.058 Score=57.71 Aligned_cols=263 Identities=11% Similarity=0.172 Sum_probs=171.0
Q ss_pred CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEE
Q 003445 38 DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFA 117 (819)
Q Consensus 38 Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~La 117 (819)
+..|.|.|+.++.....-.- .-.+.-.+|..+.||.-. ..++.++|+++.+.+..+.- ...|..-.|-. .+.|+
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi---~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis-~~~L~ 121 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS-LNTVA 121 (365)
T ss_dssp EEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECS-SSEEE
T ss_pred CCEEEEEECCCCCCcccccc---ccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecC-CCeEE
Confidence 34788899987665533221 112344588888877765 78999999999998888874 45677777764 44555
Q ss_pred EEECCCcEEEEECCC-CeEEEEEecCC----CCeEEEEEcCCCCEEEEEEC-------CCeEEEEECCCCeEEEEEecCC
Q 003445 118 SGSLDTNLKIWDIRK-KGCIHTYKGHT----RGVNAIRFTPDGRWVVSGGE-------DNTVKLWDLTAGKLLHDFKCHE 185 (819)
Q Consensus 118 sgs~Dg~I~IwDi~t-~~~i~~~~~h~----~~I~sl~fspdg~~L~sgs~-------Dg~I~IwDl~t~~~i~~~~~h~ 185 (819)
..+ +..|+.|++.. ..+.+.+..|. ..|.....+++.+|++..+- .|.+.+|..+.+ .-+.+.+|.
T Consensus 122 lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGha 199 (365)
T 2xzh_A 122 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA 199 (365)
T ss_dssp EEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSE
T ss_pred EEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeee
Confidence 554 57799999974 45677776653 46888888999999886542 367888988754 445556664
Q ss_pred CCeEEEEEeCC---CCEEEEEEC---CCeEEEEECCCC---e------EEEEeCC---CCCCeeEEEEeCCCCEEEEEEC
Q 003445 186 GQIQCIDFHPH---EFLLATGSA---DRTVKFWDLETF---E------LIGSAGP---ETSGVRCLTFNPDGRTLLCGLH 247 (819)
Q Consensus 186 ~~I~sl~fspd---g~~Lasgs~---Dg~I~iwDl~~~---~------~l~~~~~---~~~~I~sl~fspdg~~Lasgs~ 247 (819)
+.-..+.+.-+ ..+++.+.. .+.+++.++... . .+..+-+ .....-++..++.-..++.-+.
T Consensus 200 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK 279 (365)
T 2xzh_A 200 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 279 (365)
T ss_dssp EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC
Confidence 43322222111 123333332 258999988432 1 2222222 2455678888887667765555
Q ss_pred -CCEEEEEecCCceeeeeeccccceeEeEe--cCCCEEEEEEcCCeEEEEEecCCceeeeeeccc
Q 003445 248 -ESLKVFSWEPIRCHDAVDVGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSV 309 (819)
Q Consensus 248 -d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~--~dg~lLa~~~~Dg~V~IW~ld~~~~~p~~~~~~ 309 (819)
+-+++||++++.|+..-......+..... ..+.+++.. ..|.|.--.++...+.||.....
T Consensus 280 ~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vn-r~GqVl~v~v~~~~ivpyi~~~l 343 (365)
T 2xzh_A 280 YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVN-RKGQVLSVCVEEENIIPYITNVL 343 (365)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEE-TTCEEEEEEECTTTHHHHHHHTT
T ss_pred CcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEc-CCCEEEEEEECcccEehhhhhcC
Confidence 45999999999998776666665544333 234444444 88888888999999998876543
No 295
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.78 E-value=0.068 Score=62.77 Aligned_cols=117 Identities=5% Similarity=-0.054 Sum_probs=79.1
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEE
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA--SGTIKLWDLEEAKIV 94 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~--DG~I~IWDl~s~~~i 94 (819)
.....+++.+.+++++++-...+.|.+.++........+...-.....|+++|.+.+|+.... .+.|...++......
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~ 163 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 163 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence 568899999877777777778899999998654433333344456789999997666655553 467777777644333
Q ss_pred EEEcCCCCCeEEEEEecCCCEEEEE-ECCCcEEEEECCCC
Q 003445 95 RTLTGHRSNCISVDFHPFGEFFASG-SLDTNLKIWDIRKK 133 (819)
Q Consensus 95 ~~l~~h~~~I~sl~fsp~g~~Lasg-s~Dg~I~IwDi~t~ 133 (819)
......-.....|++.+++..|..+ ...+.|..+|+...
T Consensus 164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT 203 (619)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence 3333334567889999876655554 44567888887653
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.73 E-value=0.0043 Score=66.75 Aligned_cols=208 Identities=12% Similarity=0.134 Sum_probs=134.0
Q ss_pred EEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEE-ecC----CC--CCeEEEEE---cCCCCEEEEEE--
Q 003445 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILS-LSG----HT--SGIDSVSF---DSSEVLVAAGA-- 78 (819)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~-l~~----h~--~~V~~l~f---spdg~~Lasgs-- 78 (819)
.+....---.|++|.+.++.++++.-..+.|..|+...+..... +.+ .. ..+..|.| .++++++++..
T Consensus 7 ~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 7 DVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp EECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred EecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 34444445568899986676666666899999999875543333 222 11 13579999 68888877644
Q ss_pred -----------CCCeEEEEECC---CCeEEEEEc--C-----------CCCCeEEEEEecCCCEEEEEECC-CcEEEEEC
Q 003445 79 -----------ASGTIKLWDLE---EAKIVRTLT--G-----------HRSNCISVDFHPFGEFFASGSLD-TNLKIWDI 130 (819)
Q Consensus 79 -----------~DG~I~IWDl~---s~~~i~~l~--~-----------h~~~I~sl~fsp~g~~Lasgs~D-g~I~IwDi 130 (819)
.+..|..||+. +++.+.... . -...+..++..++|+..++++.. +.|..++.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 26789999999 777655443 1 11247899999999999999888 88888887
Q ss_pred CCCeEEEEEe-c-----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE--EEEEe-cC---CCCeEEE-EEeCCC
Q 003445 131 RKKGCIHTYK-G-----HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL--LHDFK-CH---EGQIQCI-DFHPHE 197 (819)
Q Consensus 131 ~t~~~i~~~~-~-----h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~--i~~~~-~h---~~~I~sl-~fspdg 197 (819)
.... +..+. . .....+.|+++|+|+.|++....|.|..+|+..... +..-. +. -.....| ..-.+|
T Consensus 167 dG~~-~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G 245 (334)
T 2p9w_A 167 DGKT-VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGN 245 (334)
T ss_dssp TSCC-EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETT
T ss_pred CCCE-EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCC
Confidence 6543 22221 1 122367999999999999887899999999885322 21110 21 1123333 223366
Q ss_pred CE-EEEEECCCeEEEEECCCCeE
Q 003445 198 FL-LATGSADRTVKFWDLETFEL 219 (819)
Q Consensus 198 ~~-Lasgs~Dg~I~iwDl~~~~~ 219 (819)
+. |++....+.+.+.+.+.++.
T Consensus 246 ~vllV~~~~~~~~~l~S~DgW~s 268 (334)
T 2p9w_A 246 ESVLVGARAPYAISFRSWDNWKS 268 (334)
T ss_dssp EEEEEEEETTEEEEEECSSTTSE
T ss_pred EEEEEEcCCCCEEEEECCCCcce
Confidence 66 44445566666666555443
No 297
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.68 E-value=0.026 Score=61.49 Aligned_cols=237 Identities=14% Similarity=0.123 Sum_probs=136.8
Q ss_pred ccceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc-eEEEec---CCCCCeEEEEEcCC---CCEEEEE
Q 003445 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-AILSLS---GHTSGIDSVSFDSS---EVLVAAG 77 (819)
Q Consensus 5 r~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~-~i~~l~---~h~~~V~~l~fspd---g~~Lasg 77 (819)
..+++..+...-...+.++|.| +++ |+++..+|.|.+++ .+++ .+..+. ........|+|+|+ +..|+++
T Consensus 17 ~~~~~~~va~~l~~P~~ia~~p-dG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~ 93 (354)
T 3a9g_A 17 WKFKISEVASDLEVPWSIAPLG-GGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLY 93 (354)
T ss_dssp CCEEEEEEECSCSCEEEEEEEE-TTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CCeEEEEEeCCCCCCeEEEEcC-CCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEE
Confidence 3466666666567789999999 556 45556679999997 3454 222221 12356899999997 4455444
Q ss_pred EC----C----CeEEEEECCCC-------eEE-EEEcC-CCCCeEEEEEecCCCEEEEEEC-------------CCcEEE
Q 003445 78 AA----S----GTIKLWDLEEA-------KIV-RTLTG-HRSNCISVDFHPFGEFFASGSL-------------DTNLKI 127 (819)
Q Consensus 78 s~----D----G~I~IWDl~s~-------~~i-~~l~~-h~~~I~sl~fsp~g~~Lasgs~-------------Dg~I~I 127 (819)
.. + +.|..|+.... +.+ ..+.. .......|.|.|+|.++++.+. .|.|.-
T Consensus 94 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~r 173 (354)
T 3a9g_A 94 ASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILR 173 (354)
T ss_dssp EEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEE
T ss_pred EeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEE
Confidence 33 3 67888887654 111 11221 1123457899999987666432 245666
Q ss_pred EECCCC---------eEEEEEecCCCCeEEEEEcC-CCCEEEEEECCC---eEEEEECCC--------C--------eEE
Q 003445 128 WDIRKK---------GCIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDN---TVKLWDLTA--------G--------KLL 178 (819)
Q Consensus 128 wDi~t~---------~~i~~~~~h~~~I~sl~fsp-dg~~L~sgs~Dg---~I~IwDl~t--------~--------~~i 178 (819)
++.... ..+.. .++.. ...++|+| +|+++++-...+ .|.+..--. + ..+
T Consensus 174 i~~dG~~p~~npf~~~~i~a-~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 251 (354)
T 3a9g_A 174 VDEEGRPPADNPFPNSPIWS-YGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPV 251 (354)
T ss_dssp ECTTSCCCTTSSSTTCCEEE-ECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred EcCCCCCCCCCCCCCCcEEE-EccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCE
Confidence 665432 12222 23433 46899999 566444432211 243332100 0 122
Q ss_pred EEEecCCCCeEEEEEe-------CCCCEEEEEECCCeEEEEECCCC-eEE--EEe-CCCCCCeeEEEEeCCCCEEEEEE
Q 003445 179 HDFKCHEGQIQCIDFH-------PHEFLLATGSADRTVKFWDLETF-ELI--GSA-GPETSGVRCLTFNPDGRTLLCGL 246 (819)
Q Consensus 179 ~~~~~h~~~I~sl~fs-------pdg~~Lasgs~Dg~I~iwDl~~~-~~l--~~~-~~~~~~I~sl~fspdg~~Lasgs 246 (819)
..+.........+.|. .+|.++++....+.|...++... +.. ..+ ......+..+++.|||.++++..
T Consensus 252 ~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 252 IDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred eecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 2231123457788884 46777777767788999998753 332 223 22245689999999997666653
No 298
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.66 E-value=0.002 Score=67.78 Aligned_cols=221 Identities=15% Similarity=0.140 Sum_probs=116.6
Q ss_pred CCcEEEEEe-CC-----CeEEEEECCCCceEEEe--cCCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCe--
Q 003445 28 SSRVLVTGG-ED-----HKVNLWAIGKPNAILSL--SGHTSGIDSVSFDSSEVLVAAGAAS-----GTIKLWDLEEAK-- 92 (819)
Q Consensus 28 ~~~~Latgs-~D-----g~V~IWdl~~~~~i~~l--~~h~~~V~~l~fspdg~~Lasgs~D-----G~I~IWDl~s~~-- 92 (819)
++.+++.|+ .+ ..+.+||..+.+....- .........+. -++.+++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 445666666 33 36889998776543321 11111112222 356777777765 468999988765
Q ss_pred -EEE--EEcCCCCCeEEEEEecCCCEEEEEECC-----CcEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEE
Q 003445 93 -IVR--TLTGHRSNCISVDFHPFGEFFASGSLD-----TNLKIWDIRKKGCIHTYK--GHTRGVNAIRFTPDGRWVVSGG 162 (819)
Q Consensus 93 -~i~--~l~~h~~~I~sl~fsp~g~~Lasgs~D-----g~I~IwDi~t~~~i~~~~--~h~~~I~sl~fspdg~~L~sgs 162 (819)
... .+.........+.+ ++..++.|+.+ ..+.+||+.+.+....-. .......++.+ +++.++.|+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 167 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG 167 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred eeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence 322 22222222222223 56677777644 368899988776443322 11111222222 577777777
Q ss_pred CC-----CeEEEEECCCCeEEEEEecCCC--CeEEEEEeCCCCEEEEEECC-----CeEEEEECCCCeEEEEe--CCCCC
Q 003445 163 ED-----NTVKLWDLTAGKLLHDFKCHEG--QIQCIDFHPHEFLLATGSAD-----RTVKFWDLETFELIGSA--GPETS 228 (819)
Q Consensus 163 ~D-----g~I~IwDl~t~~~i~~~~~h~~--~I~sl~fspdg~~Lasgs~D-----g~I~iwDl~~~~~l~~~--~~~~~ 228 (819)
.+ ..+.+||+.+.+-...-..... ....+. -++.+++.|+.+ ..+.+||+.+.+-...- .....
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 245 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC 245 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc
Confidence 54 4589999988754433111111 112222 267777887764 46999999876644332 11112
Q ss_pred CeeEEEEeCCCCEEEEEECC------CEEEEEecCC
Q 003445 229 GVRCLTFNPDGRTLLCGLHE------SLKVFSWEPI 258 (819)
Q Consensus 229 ~I~sl~fspdg~~Lasgs~d------~I~Vwd~~~~ 258 (819)
....+. -++++++.|+.+ .+.+||.++.
T Consensus 246 ~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 246 YVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred ceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 222222 266666666433 2455555543
No 299
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.66 E-value=0.0026 Score=66.91 Aligned_cols=228 Identities=16% Similarity=0.163 Sum_probs=120.2
Q ss_pred CCCEEEEEE-CC-----CeEEEEECCCCeEEEE--EcCCCCCeEEEEEecCCCEEEEEECC-----CcEEEEECCCCe--
Q 003445 70 SEVLVAAGA-AS-----GTIKLWDLEEAKIVRT--LTGHRSNCISVDFHPFGEFFASGSLD-----TNLKIWDIRKKG-- 134 (819)
Q Consensus 70 dg~~Lasgs-~D-----G~I~IWDl~s~~~i~~--l~~h~~~I~sl~fsp~g~~Lasgs~D-----g~I~IwDi~t~~-- 134 (819)
++.+++.|+ .+ ..+.+||+.+.+.... +.........+. .++..++.|+.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 445566665 22 4788999887764332 111112222222 256677777754 468999988765
Q ss_pred -EEEE--EecCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC
Q 003445 135 -CIHT--YKGHTRGVNAIRFTPDGRWVVSGGED-----NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD 206 (819)
Q Consensus 135 -~i~~--~~~h~~~I~sl~fspdg~~L~sgs~D-----g~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~D 206 (819)
.... +.........+.+ +++.++.|+.+ ..+.+||..+.+-...-..........+..-++.+++.|+.+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 169 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYD 169 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBC
T ss_pred eeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCC
Confidence 3322 2111112222222 56777777654 368899998776433222111111111122267788887754
Q ss_pred -----CeEEEEECCCCeEEEE--eCCCCCCeeEEEEeCCCCEEEEEEC------CCEEEEEecCCceeeeeeccccc-ee
Q 003445 207 -----RTVKFWDLETFELIGS--AGPETSGVRCLTFNPDGRTLLCGLH------ESLKVFSWEPIRCHDAVDVGWSR-LS 272 (819)
Q Consensus 207 -----g~I~iwDl~~~~~l~~--~~~~~~~I~sl~fspdg~~Lasgs~------d~I~Vwd~~~~~~~~~~~~~~s~-i~ 272 (819)
..+.+||+.+.+-... +.........+.+ ++++++.|+. +.+.+||.++.+-...-...... ..
T Consensus 170 ~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~ 247 (301)
T 2vpj_A 170 GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYV 247 (301)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred CCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccce
Confidence 4689999987654333 2111111222222 5666666653 34788887776544332222111 12
Q ss_pred EeEecCCCEEEEEEcC-----CeEEEEEecCCceee
Q 003445 273 DLNVHEGKLLGCSYNQ-----SCVGVWVVDISRIEP 303 (819)
Q Consensus 273 ~l~~~dg~lLa~~~~D-----g~V~IW~ld~~~~~p 303 (819)
.....++++++.|+.+ ..|.+||++..+-..
T Consensus 248 ~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 283 (301)
T 2vpj_A 248 GATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEV 283 (301)
T ss_dssp EEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred eEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence 2344578888887765 356667766655443
No 300
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.60 E-value=0.0035 Score=66.09 Aligned_cols=221 Identities=16% Similarity=0.209 Sum_probs=116.0
Q ss_pred CcEEEEEeCC----CeEEEEECCCCceEEEec--CCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEEE
Q 003445 29 SRVLVTGGED----HKVNLWAIGKPNAILSLS--GHTSGIDSVSFDSSEVLVAAGAAS-----GTIKLWDLEEAKIVRTL 97 (819)
Q Consensus 29 ~~~Latgs~D----g~V~IWdl~~~~~i~~l~--~h~~~V~~l~fspdg~~Lasgs~D-----G~I~IWDl~s~~~i~~l 97 (819)
+.+++.|+.+ ..+.+||..+.+....-. .....-..+.+ ++.+++.|+.+ ..+.+||..+.+....-
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 4566666643 458889987765433211 11111122222 66777777754 46889999877644322
Q ss_pred --cCCCCCeEEEEEecCCCEEEEEECCC-----cEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEECC----
Q 003445 98 --TGHRSNCISVDFHPFGEFFASGSLDT-----NLKIWDIRKKGCIHTYK--GHTRGVNAIRFTPDGRWVVSGGED---- 164 (819)
Q Consensus 98 --~~h~~~I~sl~fsp~g~~Lasgs~Dg-----~I~IwDi~t~~~i~~~~--~h~~~I~sl~fspdg~~L~sgs~D---- 164 (819)
.........+.+ ++..++.|+.++ .+.+||+.+.+....-. ...... +++.. +++.++.|+.+
T Consensus 94 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~ 169 (302)
T 2xn4_A 94 NMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVGVV-GGLLYAVGGYDVASR 169 (302)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEECCEETTTT
T ss_pred CCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEEEE-CCEEEEEeCCCCCCC
Confidence 111222222222 567777777553 57889988776443311 111111 22222 56666766542
Q ss_pred ---CeEEEEECCCCeEEEEEec--CCCCeEEEEEeCCCCEEEEEECC-----CeEEEEECCCCeEEEE--eCCCCCCeeE
Q 003445 165 ---NTVKLWDLTAGKLLHDFKC--HEGQIQCIDFHPHEFLLATGSAD-----RTVKFWDLETFELIGS--AGPETSGVRC 232 (819)
Q Consensus 165 ---g~I~IwDl~t~~~i~~~~~--h~~~I~sl~fspdg~~Lasgs~D-----g~I~iwDl~~~~~l~~--~~~~~~~I~s 232 (819)
..+.+||+.+.+-...-.. .......+. -++.+++.|+.+ ..+.+||+.+.+-... +........
T Consensus 170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~- 246 (302)
T 2xn4_A 170 QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAG- 246 (302)
T ss_dssp EECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE-
T ss_pred ccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCe-
Confidence 3588999987754432111 111112222 267788887754 3699999987654332 211111112
Q ss_pred EEEeCCCCEEEEEECC------CEEEEEecCCc
Q 003445 233 LTFNPDGRTLLCGLHE------SLKVFSWEPIR 259 (819)
Q Consensus 233 l~fspdg~~Lasgs~d------~I~Vwd~~~~~ 259 (819)
++. -++++++.|+.+ .+.+||.++.+
T Consensus 247 ~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 247 VCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEE-ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 222 266666666532 36677766543
No 301
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.59 E-value=0.01 Score=63.76 Aligned_cols=191 Identities=13% Similarity=0.142 Sum_probs=126.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEcCC-----C--CCeEEEEE---ecCCCEEEEEE---
Q 003445 55 LSGHTSGIDSVSFDSSEVLVAAGA-ASGTIKLWDLEEAKIVRTLTGH-----R--SNCISVDF---HPFGEFFASGS--- 120 (819)
Q Consensus 55 l~~h~~~V~~l~fspdg~~Lasgs-~DG~I~IWDl~s~~~i~~l~~h-----~--~~I~sl~f---sp~g~~Lasgs--- 120 (819)
+........++.|++....|+.++ ..|+|..||...+......... . ..+..|.| .|+++++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 444455667899988666666666 6899999999866544332221 1 13579999 68877777544
Q ss_pred ----------CCCcEEEEECC---CCeEEEEEe--c-----------CCCCeEEEEEcCCCCEEEEEECC-CeEEEEECC
Q 003445 121 ----------LDTNLKIWDIR---KKGCIHTYK--G-----------HTRGVNAIRFTPDGRWVVSGGED-NTVKLWDLT 173 (819)
Q Consensus 121 ----------~Dg~I~IwDi~---t~~~i~~~~--~-----------h~~~I~sl~fspdg~~L~sgs~D-g~I~IwDl~ 173 (819)
.+..|..||+. +++.+.... . .......++..++|+..++++.. +.|..++..
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 25779999999 777665543 1 11347899999999999999988 888888876
Q ss_pred CCeEEEEEec------CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeE--EEEe--CC--CCCCeeEE-EEeCCCC
Q 003445 174 AGKLLHDFKC------HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL--IGSA--GP--ETSGVRCL-TFNPDGR 240 (819)
Q Consensus 174 t~~~i~~~~~------h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~--l~~~--~~--~~~~I~sl-~fspdg~ 240 (819)
.. .+..+.. .....+.|+++|+|..|++....|.|..+|+..... +... .. .-.....| ..-.+|+
T Consensus 168 G~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~ 246 (334)
T 2p9w_A 168 GK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNE 246 (334)
T ss_dssp SC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred CC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCE
Confidence 44 3332221 122367999999999888887799999999885332 2111 11 11223443 3345788
Q ss_pred EEEEEE
Q 003445 241 TLLCGL 246 (819)
Q Consensus 241 ~Lasgs 246 (819)
.|+++.
T Consensus 247 vllV~~ 252 (334)
T 2p9w_A 247 SVLVGA 252 (334)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 866554
No 302
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.59 E-value=0.046 Score=64.34 Aligned_cols=228 Identities=7% Similarity=-0.043 Sum_probs=145.4
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEc-CCCCCeEEEEEecCCCEEEEE-ECCCcEEEEECCCCeEEEEEecCCCCeEEEE
Q 003445 73 LVAAGAASGTIKLWDLEEAKIVRTLT-GHRSNCISVDFHPFGEFFASG-SLDTNLKIWDIRKKGCIHTYKGHTRGVNAIR 150 (819)
Q Consensus 73 ~Lasgs~DG~I~IWDl~s~~~i~~l~-~h~~~I~sl~fsp~g~~Lasg-s~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~ 150 (819)
+|+.+ ..+.|+..|++.......+. ..-.....|+|++.+..|+.+ ..++.|+.+++........+.........++
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 44443 56789999998765433332 223467899999976665544 4578899999876544333433334567889
Q ss_pred EcCCCCEEE-EEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeEEEEeCCCC
Q 003445 151 FTPDGRWVV-SGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA--DRTVKFWDLETFELIGSAGPET 227 (819)
Q Consensus 151 fspdg~~L~-sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~--Dg~I~iwDl~~~~~l~~~~~~~ 227 (819)
+.+.+..|+ +-...+.|.+.++........+...-.....|+++|...+|+.... .+.|...++.......... ..
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~ 165 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NV 165 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SC
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CC
Confidence 987655554 4445688999998754432223233455789999996555655542 5688888887544332232 34
Q ss_pred CCeeEEEEeCCCCEEEEEECC--CEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEEecCCceee
Q 003445 228 SGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (819)
Q Consensus 228 ~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~p 303 (819)
.....|++++++..|+.+... .|..++++.... .++......-..+.+.++.++.+-...+.|...+..+++...
T Consensus 166 ~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~ 242 (628)
T 4a0p_A 166 GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRT 242 (628)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred CCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCceE
Confidence 567899999998888887654 477777765433 333333333345666666666677777888888765555433
No 303
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.57 E-value=0.00014 Score=87.21 Aligned_cols=209 Identities=10% Similarity=0.009 Sum_probs=124.4
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC----CceEEEecCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCC
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK----PNAILSLSGHTSGIDSVSFDSSE-VLVAAGAASGTIKLWDLEEA 91 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~----~~~i~~l~~h~~~V~~l~fspdg-~~Lasgs~DG~I~IWDl~s~ 91 (819)
..+..++|.+.++.++++-...+.|+.+++.. ......+...-.....|++.+.+ .++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 45678899886666666656678899998864 22222222112235678887544 44445455788999998765
Q ss_pred eEEEEEcCCCCCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCeEE
Q 003445 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSL--DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSG-GEDNTVK 168 (819)
Q Consensus 92 ~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~--Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sg-s~Dg~I~ 168 (819)
.....+.........|++.|.+.+|+.+.. .+.|..+++........+...-.....|+|+|++..|+.+ ...+.|.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 544333333344567889987665554433 2678888875433222222223345689999976555554 4567899
Q ss_pred EEECCCCeEEEEEec--CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCC
Q 003445 169 LWDLTAGKLLHDFKC--HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE 226 (819)
Q Consensus 169 IwDl~t~~~i~~~~~--h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~ 226 (819)
.+|+........+.. .......|++..+ .++++....+.|..+|..+++.+..+...
T Consensus 566 ~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~ 624 (699)
T 1n7d_A 566 SIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAEN 624 (699)
T ss_dssp EECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCTT
T ss_pred EEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeecC
Confidence 999874332222221 1123345566544 45555556788999998888877766443
No 304
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.57 E-value=0.16 Score=56.31 Aligned_cols=262 Identities=11% Similarity=0.165 Sum_probs=170.5
Q ss_pred CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEE
Q 003445 38 DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFA 117 (819)
Q Consensus 38 Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~La 117 (819)
+..|.|.|+.++..+..-.- .-.+.-.+|..+.|+.-. ..++.+||+++...+..+.-.. .|..-.|-. .+.|+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis-~~~l~ 120 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWIS-LNTVA 120 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEE-TTEEE
T ss_pred CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecC-CCeEE
Confidence 34788899887665533221 123455678887777655 7899999999999888887444 555556654 34555
Q ss_pred EEECCCcEEEEECCC-CeEEEEEecCC----CCeEEEEEcCCCCEEEEEEC-------CCeEEEEECCCCeEEEEEecCC
Q 003445 118 SGSLDTNLKIWDIRK-KGCIHTYKGHT----RGVNAIRFTPDGRWVVSGGE-------DNTVKLWDLTAGKLLHDFKCHE 185 (819)
Q Consensus 118 sgs~Dg~I~IwDi~t-~~~i~~~~~h~----~~I~sl~fspdg~~L~sgs~-------Dg~I~IwDl~t~~~i~~~~~h~ 185 (819)
..+ +..|+.|++.. ..+...+..|. ..|.....+++++|++..+- .|.+.+|....+ .-+.+.+|.
T Consensus 121 lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGha 198 (494)
T 1bpo_A 121 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA 198 (494)
T ss_dssp EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSE
T ss_pred EEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeee
Confidence 554 57899999974 45677776653 46888888999999885542 367888987754 344566665
Q ss_pred CCeEEEEEeCC---CCEEEEEECC---CeEEEEECCCC---------eEEEEeCC---CCCCeeEEEEeCCCCEEEEEEC
Q 003445 186 GQIQCIDFHPH---EFLLATGSAD---RTVKFWDLETF---------ELIGSAGP---ETSGVRCLTFNPDGRTLLCGLH 247 (819)
Q Consensus 186 ~~I~sl~fspd---g~~Lasgs~D---g~I~iwDl~~~---------~~l~~~~~---~~~~I~sl~fspdg~~Lasgs~ 247 (819)
+.-..+.+.-+ ..+++.+... +.++|.++... +.+..+-+ ......++..++.-..++.-+.
T Consensus 199 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK 278 (494)
T 1bpo_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 278 (494)
T ss_dssp EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec
Confidence 44433332211 1244444432 78999998532 11211212 2445678888887777776555
Q ss_pred C-CEEEEEecCCceeeeeeccccceeEeEe--cCCCEEEEEEcCCeEEEEEecCCceeeeeecc
Q 003445 248 E-SLKVFSWEPIRCHDAVDVGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGS 308 (819)
Q Consensus 248 d-~I~Vwd~~~~~~~~~~~~~~s~i~~l~~--~dg~lLa~~~~Dg~V~IW~ld~~~~~p~~~~~ 308 (819)
. -+++||++++.++..-......+..... ..+.++++ ...|.|.--.++...+.||....
T Consensus 279 ~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~V-nr~GqVl~v~v~e~~ivpyi~~~ 341 (494)
T 1bpo_A 279 YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGV-NRKGQVLSVCVEEENIIPYITNV 341 (494)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEE-ETTCEEEEEEECTTTHHHHHHHT
T ss_pred CceEEEEecccceeeeeecccCCceEEecccCCCCcEEEE-ccCceEEEEEEccccchhhhhhc
Confidence 4 5999999999998776666655544333 23344444 48888888888888888887654
No 305
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.56 E-value=0.25 Score=58.12 Aligned_cols=157 Identities=12% Similarity=0.041 Sum_probs=97.3
Q ss_pred CeEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEE-ecCCCCeEEEEEeC-CCCEEEEEECCC--eEEEEECCCCeE
Q 003445 145 GVNAIRFTPDGRWVV-SGGEDNTVKLWDLTAGKLLHDF-KCHEGQIQCIDFHP-HEFLLATGSADR--TVKFWDLETFEL 219 (819)
Q Consensus 145 ~I~sl~fspdg~~L~-sgs~Dg~I~IwDl~t~~~i~~~-~~h~~~I~sl~fsp-dg~~Lasgs~Dg--~I~iwDl~~~~~ 219 (819)
....+++...++.|+ +-+..+.|.+.++. |+....+ .........|+++| +|.++++-.... .|...++.....
T Consensus 390 ~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~ 468 (628)
T 4a0p_A 390 QPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER 468 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC
T ss_pred CcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc
Confidence 467888888766555 55567889999986 4444333 33445689999999 565555543333 677777764433
Q ss_pred EEEeCCCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEEec
Q 003445 220 IGSAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 220 l~~~~~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld 297 (819)
.......-.....|++++++..|+.+..+ .|..++++.................+.+.++.++.+-.....|...+..
T Consensus 469 ~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~~~~~P~glav~~~~ly~tD~~~~~i~~~~k~ 548 (628)
T 4a0p_A 469 EVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMT 548 (628)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred EEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcCCCCCcEEEEEECCEEEEEECCCCeEEEEECc
Confidence 33333334567999999998888887654 4777777654333232222333345555666666666666677666665
Q ss_pred CCcee
Q 003445 298 ISRIE 302 (819)
Q Consensus 298 ~~~~~ 302 (819)
+++..
T Consensus 549 ~G~~~ 553 (628)
T 4a0p_A 549 GREGR 553 (628)
T ss_dssp SSSCC
T ss_pred CCCCc
Confidence 55543
No 306
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.55 E-value=0.0045 Score=65.32 Aligned_cols=221 Identities=12% Similarity=0.132 Sum_probs=117.3
Q ss_pred CcEEEEEeC--CCeEEEEECCCCceEEEec--CCCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCCCeEEEEEc--
Q 003445 29 SRVLVTGGE--DHKVNLWAIGKPNAILSLS--GHTSGIDSVSFDSSEVLVAAGAAS----GTIKLWDLEEAKIVRTLT-- 98 (819)
Q Consensus 29 ~~~Latgs~--Dg~V~IWdl~~~~~i~~l~--~h~~~V~~l~fspdg~~Lasgs~D----G~I~IWDl~s~~~i~~l~-- 98 (819)
+.+++.|+. ...+.+||..+.+....-. ........+. -++.+++.|+.+ ..+.+||+.+.+....-.
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 456666764 3578899987766443211 1111222222 256677777754 678999998876543322
Q ss_pred CCCCCeEEEEEecCCCEEEEEECC------CcEEEEECCCCeEEEEEec--CCCCeEEEEEcCCCCEEEEEEC-------
Q 003445 99 GHRSNCISVDFHPFGEFFASGSLD------TNLKIWDIRKKGCIHTYKG--HTRGVNAIRFTPDGRWVVSGGE------- 163 (819)
Q Consensus 99 ~h~~~I~sl~fsp~g~~Lasgs~D------g~I~IwDi~t~~~i~~~~~--h~~~I~sl~fspdg~~L~sgs~------- 163 (819)
........+.+ ++..++.|+.+ ..+.+||..+.+....-.. .......+.+ +++.++.|+.
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 165 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSG 165 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTC
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcc
Confidence 11222222222 56777777765 4689999988764433111 1111122222 5666666654
Q ss_pred --CCeEEEEECCCCeEEEEEecCCCCe-EEEEEeCCCCEEEEEECC-----CeEEEEECCCCeEEEE--eCCCCCCeeEE
Q 003445 164 --DNTVKLWDLTAGKLLHDFKCHEGQI-QCIDFHPHEFLLATGSAD-----RTVKFWDLETFELIGS--AGPETSGVRCL 233 (819)
Q Consensus 164 --Dg~I~IwDl~t~~~i~~~~~h~~~I-~sl~fspdg~~Lasgs~D-----g~I~iwDl~~~~~l~~--~~~~~~~I~sl 233 (819)
-..+.+||..+.+-...-....... .++.. -++++++.|+.+ ..+.+||+.+.+-... +.........+
T Consensus 166 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 244 (306)
T 3ii7_A 166 RVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCA 244 (306)
T ss_dssp EECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEE
T ss_pred cccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEE
Confidence 3458899998875433211111111 12222 266777777653 3689999987653322 22112222333
Q ss_pred EEeCCCCEEEEEECC------CEEEEEecCC
Q 003445 234 TFNPDGRTLLCGLHE------SLKVFSWEPI 258 (819)
Q Consensus 234 ~fspdg~~Lasgs~d------~I~Vwd~~~~ 258 (819)
.+ ++++++.|+.+ .+.+||.++.
T Consensus 245 ~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 245 AV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred EE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 33 66677776532 3556665554
No 307
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.50 E-value=0.01 Score=62.58 Aligned_cols=225 Identities=8% Similarity=0.091 Sum_probs=119.7
Q ss_pred CCEEEEEEC--CCeEEEEECCCCeEEEE--EcCCCCCeEEEEEecCCCEEEEEECC----CcEEEEECCCCeEEEEEec-
Q 003445 71 EVLVAAGAA--SGTIKLWDLEEAKIVRT--LTGHRSNCISVDFHPFGEFFASGSLD----TNLKIWDIRKKGCIHTYKG- 141 (819)
Q Consensus 71 g~~Lasgs~--DG~I~IWDl~s~~~i~~--l~~h~~~I~sl~fsp~g~~Lasgs~D----g~I~IwDi~t~~~i~~~~~- 141 (819)
+.+++.|+. ...+.+||..+.+.... +.........+.+ ++..++.|+.+ ..+.+||+.+.+....-..
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 335556654 36789999988764432 1111222222222 56677777754 5788999988765433221
Q ss_pred -CCCCeEEEEEcCCCCEEEEEECC------CeEEEEECCCCeEEEEEecCCCCe-EEEEEeCCCCEEEEEEC--------
Q 003445 142 -HTRGVNAIRFTPDGRWVVSGGED------NTVKLWDLTAGKLLHDFKCHEGQI-QCIDFHPHEFLLATGSA-------- 205 (819)
Q Consensus 142 -h~~~I~sl~fspdg~~L~sgs~D------g~I~IwDl~t~~~i~~~~~h~~~I-~sl~fspdg~~Lasgs~-------- 205 (819)
.......+.+ +++.++.|+.+ ..+.+||..+.+-...-....... .+++. -++++++.|+.
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCE
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCccc
Confidence 1111222222 56777777765 468999998876433211111111 11222 36677777763
Q ss_pred -CCeEEEEECCCCeEEEEe--CCCCCCeeEEEEeCCCCEEEEEEC------CCEEEEEecCCceeeeeeccccce-eEeE
Q 003445 206 -DRTVKFWDLETFELIGSA--GPETSGVRCLTFNPDGRTLLCGLH------ESLKVFSWEPIRCHDAVDVGWSRL-SDLN 275 (819)
Q Consensus 206 -Dg~I~iwDl~~~~~l~~~--~~~~~~I~sl~fspdg~~Lasgs~------d~I~Vwd~~~~~~~~~~~~~~s~i-~~l~ 275 (819)
-..+.+||..+.+-...- ........ +... ++++++.|+. +.+.+||..+.+-...-....... ..+.
T Consensus 167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 244 (306)
T 3ii7_A 167 VLNSCEVYDPATETWTELCPMIEARKNHG-LVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCA 244 (306)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCE-EEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEE
T ss_pred ccceEEEeCCCCCeEEECCCccchhhcce-EEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEE
Confidence 345889999886543322 11111122 2222 6666666542 357788877654433322221111 2233
Q ss_pred ecCCCEEEEEEcC-----CeEEEEEecCCcee
Q 003445 276 VHEGKLLGCSYNQ-----SCVGVWVVDISRIE 302 (819)
Q Consensus 276 ~~dg~lLa~~~~D-----g~V~IW~ld~~~~~ 302 (819)
..++++++.|+.+ ..+.+||++..+-.
T Consensus 245 ~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 245 AVGSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp EETTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred EECCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 3578888888754 45677777665544
No 308
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.49 E-value=0.0003 Score=84.23 Aligned_cols=223 Identities=9% Similarity=-0.034 Sum_probs=129.6
Q ss_pred CCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCC----CeEEEEEecCCCCeEEEEEcC
Q 003445 79 ASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRK----KGCIHTYKGHTRGVNAIRFTP 153 (819)
Q Consensus 79 ~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs-~Dg~I~IwDi~t----~~~i~~~~~h~~~I~sl~fsp 153 (819)
..+.|+..++...+....+.. ...+..++|.+.+..|+.+. ..+.|+.+++.. ......+.........|++.+
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred CccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 346788888887765544433 34566899998776665554 467899999875 221111211122345678875
Q ss_pred CC-CEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC-C-CeEEEEECCCCeEEEEeCCCCCCe
Q 003445 154 DG-RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA-D-RTVKFWDLETFELIGSAGPETSGV 230 (819)
Q Consensus 154 dg-~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~-D-g~I~iwDl~~~~~l~~~~~~~~~I 230 (819)
.+ +++++-...+.|.++++........+.........++++|.+.+|+.... . +.|..+++............-...
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~P 542 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 542 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSC
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCc
Confidence 44 44444455688999998765444333322345678899997655555432 2 678888775432221222223456
Q ss_pred eEEEEeCCCCEEEEEECC--CEEEEEecCCceeeeee--ccccceeEeEecCCCEEEEEEcCCeEEEEEecCCcee
Q 003445 231 RCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVD--VGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIE 302 (819)
Q Consensus 231 ~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~~~~~~--~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~~~ 302 (819)
..|+|++++..|+++... .|.+++++......++. ..+..-..+.+..+.++.+.+..+.|..++..+++..
T Consensus 543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 543 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 618 (699)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEE
T ss_pred cEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCce
Confidence 789999987777776544 47777776533333322 1222223344445566666667778887776555443
No 309
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.49 E-value=0.15 Score=60.92 Aligned_cols=228 Identities=11% Similarity=0.124 Sum_probs=140.9
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec----CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS----GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA 91 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~----~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~ 91 (819)
...|+|+.-.. .+ +|..|..+| +..||-. ....+. .....|.++....++ .|..|+.+| +..||..+.
T Consensus 21 ~n~V~~I~qD~-~G-~lWigT~~G-L~ryDG~---~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~ 92 (758)
T 3ott_A 21 ASVVSCFLQDS-EG-LIWIGSNKG-LFSYDGY---STQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRAD 92 (758)
T ss_dssp CCCEEEEEECT-TS-CEEEEESSC-EEEECSS---CEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTT
T ss_pred cceEEEEEECC-CC-CEEEEECCC-ccccCCC---ceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCC
Confidence 45799998875 33 577777777 6777732 222221 123468888877766 555666665 789998876
Q ss_pred eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe-----cCCCCeEEEEEcCCCCEEEEEECCCe
Q 003445 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK-----GHTRGVNAIRFTPDGRWVVSGGEDNT 166 (819)
Q Consensus 92 ~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~-----~h~~~I~sl~fspdg~~L~sgs~Dg~ 166 (819)
+...........|.++.. .++ .|..++.+ -|..||..+++.. .+. .....|.++....+|.+.+ |+.+ -
T Consensus 93 ~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-G 166 (758)
T 3ott_A 93 RYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-G 166 (758)
T ss_dssp EECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEE-EETT-E
T ss_pred EEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-C
Confidence 543211112235776654 344 56667766 5889998776543 331 1234688888887777544 5554 5
Q ss_pred EEEEECCCCeEEEEEecC------CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCC
Q 003445 167 VKLWDLTAGKLLHDFKCH------EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR 240 (819)
Q Consensus 167 I~IwDl~t~~~i~~~~~h------~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~ 240 (819)
|..+|..+++... +... ...|.++....++..|..|+. +-+..||..+++...........|.++....+|.
T Consensus 167 l~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~ 244 (758)
T 3ott_A 167 LCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGD 244 (758)
T ss_dssp EEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCC
T ss_pred HhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCC
Confidence 7888987765432 2211 124888888887776666664 4588899887654322111234578888888887
Q ss_pred EEEEEECCCEEEEEecCCce
Q 003445 241 TLLCGLHESLKVFSWEPIRC 260 (819)
Q Consensus 241 ~Lasgs~d~I~Vwd~~~~~~ 260 (819)
+.+.. .+++.+|+..+.+.
T Consensus 245 lWigT-~~Gl~~~~~~~~~~ 263 (758)
T 3ott_A 245 LLAGT-DNGLYVYHNDTTPL 263 (758)
T ss_dssp EEEEE-TTEEEEECCTTSCC
T ss_pred EEEEe-CCceeEEecCCCcE
Confidence 66554 67888887765443
No 310
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.45 E-value=0.0091 Score=62.83 Aligned_cols=225 Identities=17% Similarity=0.243 Sum_probs=118.0
Q ss_pred CCEEEEEECC----CeEEEEECCCCeEEEE--EcCCCCCeEEEEEecCCCEEEEEECC-----CcEEEEECCCCeEEEEE
Q 003445 71 EVLVAAGAAS----GTIKLWDLEEAKIVRT--LTGHRSNCISVDFHPFGEFFASGSLD-----TNLKIWDIRKKGCIHTY 139 (819)
Q Consensus 71 g~~Lasgs~D----G~I~IWDl~s~~~i~~--l~~h~~~I~sl~fsp~g~~Lasgs~D-----g~I~IwDi~t~~~i~~~ 139 (819)
+.+++.|+.+ ..+.+||+.+.+.... +.........+.+ ++..++.|+.+ ..+.+||..+.+....-
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 3455555543 4688899887764332 1111111222222 56677777754 35889999877644322
Q ss_pred e--cCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEEecCCCC-eEEEEEeCCCCEEEEEECC-----
Q 003445 140 K--GHTRGVNAIRFTPDGRWVVSGGEDN-----TVKLWDLTAGKLLHDFKCHEGQ-IQCIDFHPHEFLLATGSAD----- 206 (819)
Q Consensus 140 ~--~h~~~I~sl~fspdg~~L~sgs~Dg-----~I~IwDl~t~~~i~~~~~h~~~-I~sl~fspdg~~Lasgs~D----- 206 (819)
. ........+.+ ++..++.|+.++ .+.+||+.+.+-...-...... -.+++. -++.+++.|+.+
T Consensus 94 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 94 NMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQ 170 (302)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTE
T ss_pred CCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCc
Confidence 1 11111222222 567777777653 5788998877644321111111 112222 266777777642
Q ss_pred --CeEEEEECCCCeEEEE--eCCCCCCeeEEEEeCCCCEEEEEEC------CCEEEEEecCCceeeeeeccccc-eeEeE
Q 003445 207 --RTVKFWDLETFELIGS--AGPETSGVRCLTFNPDGRTLLCGLH------ESLKVFSWEPIRCHDAVDVGWSR-LSDLN 275 (819)
Q Consensus 207 --g~I~iwDl~~~~~l~~--~~~~~~~I~sl~fspdg~~Lasgs~------d~I~Vwd~~~~~~~~~~~~~~s~-i~~l~ 275 (819)
..+.+||+.+.+-... +.........+.+ ++++++.|+. +.+.+||.++.+-...-...... -..+.
T Consensus 171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~ 248 (302)
T 2xn4_A 171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC 248 (302)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred cccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE
Confidence 3589999987654332 2222222222222 5667666643 24778887765544332222111 12234
Q ss_pred ecCCCEEEEEEcCC-----eEEEEEecCCcee
Q 003445 276 VHEGKLLGCSYNQS-----CVGVWVVDISRIE 302 (819)
Q Consensus 276 ~~dg~lLa~~~~Dg-----~V~IW~ld~~~~~ 302 (819)
..++++++.|+.++ .|.+||++..+-.
T Consensus 249 ~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 249 AVNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp EETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred EECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 46788888877653 4777777765544
No 311
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.33 E-value=0.083 Score=57.36 Aligned_cols=244 Identities=12% Similarity=0.098 Sum_probs=137.3
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCc-EEEEEeCCCeEEEEECCCCceEEE---e----cCCCCCeEEEEEcCC---CCEE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSR-VLVTGGEDHKVNLWAIGKPNAILS---L----SGHTSGIDSVSFDSS---EVLV 74 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~-~Latgs~Dg~V~IWdl~~~~~i~~---l----~~h~~~V~~l~fspd---g~~L 74 (819)
.+++..+...-...+.|+|.| +++ +++ +...|.|++++.. +..... + .........|+|+|+ +..|
T Consensus 7 g~~~~~va~~l~~P~~i~~~p-dG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~l 83 (353)
T 2g8s_A 7 TVNVEVLQDKLDHPWALAFLP-DNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRI 83 (353)
T ss_dssp CSEEEEEEEEESSEEEEEECS-TTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEE
T ss_pred CcEEEEEECCCCCcEEEEEcC-CCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEE
Confidence 456666655556789999999 555 554 5567999999853 322111 1 112346789999996 4444
Q ss_pred EEEE-C-------CCeEEEEECCCC--e--EEEE-EcC------CCCCeEEEEEecCCCEEEEEEC-------------C
Q 003445 75 AAGA-A-------SGTIKLWDLEEA--K--IVRT-LTG------HRSNCISVDFHPFGEFFASGSL-------------D 122 (819)
Q Consensus 75 asgs-~-------DG~I~IWDl~s~--~--~i~~-l~~------h~~~I~sl~fsp~g~~Lasgs~-------------D 122 (819)
+... . ...|..|++..+ . .... +.. .......|.|.|+|.++++.+. .
T Consensus 84 Yv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~ 163 (353)
T 2g8s_A 84 WLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQ 163 (353)
T ss_dssp EEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCT
T ss_pred EEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCC
Confidence 4432 2 235777776533 1 1111 111 1122357999999966555433 2
Q ss_pred CcEEEEECCCC--------------eEEEEEecCCCCeEEEEEcC-CCCEEEEEECCC--eEEEEECCCCe---------
Q 003445 123 TNLKIWDIRKK--------------GCIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDN--TVKLWDLTAGK--------- 176 (819)
Q Consensus 123 g~I~IwDi~t~--------------~~i~~~~~h~~~I~sl~fsp-dg~~L~sgs~Dg--~I~IwDl~t~~--------- 176 (819)
|.|.-+|.... ..+.. .++. ....++|+| +|+ |+++.... .=.|.-+..+.
T Consensus 164 g~I~ri~~dG~~p~~npf~~~~~~~~~i~a-~G~r-np~gl~~d~~~g~-l~~~d~g~~~~dei~~i~~G~nyGwp~~~~ 240 (353)
T 2g8s_A 164 GKLVRLTDQGEIPDDNPFIKESGVRAEIWS-YGIR-NPQGMAMNPWSNA-LWLNEHGPRGGDEINIPQKGKNYGWPLATW 240 (353)
T ss_dssp TEEEEEETTSCCCTTCTTTTSTTSCTTEEE-ECCS-EEEEEEEETTTTE-EEEEEECSBSCEEEECCCTTCBCCTTTBCS
T ss_pred eEEEEECCCCCCCCCCCCcCCCCCCccEEE-EcCc-CccceEEECCCCC-EEEEecCCCCCcEEeEeccCCcCCCCCccC
Confidence 45777776532 11222 2333 367899999 554 44443321 11222111111
Q ss_pred ----------------------EEEEEecCCCCeEEEEEeC-------CCCEEEEEECCCeEEEEECCCCeEEEE--e-C
Q 003445 177 ----------------------LLHDFKCHEGQIQCIDFHP-------HEFLLATGSADRTVKFWDLETFELIGS--A-G 224 (819)
Q Consensus 177 ----------------------~i~~~~~h~~~I~sl~fsp-------dg~~Lasgs~Dg~I~iwDl~~~~~l~~--~-~ 224 (819)
.+..+. +......+.|.. +|.++++....+.|...++..++.+.. + .
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~ 319 (353)
T 2g8s_A 241 GINYSGFKIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILT 319 (353)
T ss_dssp SBCTTSSCCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESG
T ss_pred CCCCCCCccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEccc
Confidence 112222 234567788864 467777777788888888876654433 2 1
Q ss_pred CCCCCeeEEEEeCCCCEEEEEECCCEEEEEec
Q 003445 225 PETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (819)
Q Consensus 225 ~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (819)
.....+..+++.|||.++++.....-+||-+.
T Consensus 320 ~~~~rp~~v~~~pdG~lyv~td~~~g~I~ri~ 351 (353)
T 2g8s_A 320 DRGQRIRDVRTGPDGYLYVLTDESSGELLKVS 351 (353)
T ss_dssp GGCCCEEEEEECTTSCEEEEECSTTEEEEEEE
T ss_pred CCCCceeEEEECCCCcEEEEEeCCCCEEEEEe
Confidence 22347899999999986665543445666653
No 312
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.31 E-value=0.26 Score=52.71 Aligned_cols=208 Identities=10% Similarity=0.148 Sum_probs=136.2
Q ss_pred EEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CeEEEEEcCCC
Q 003445 23 KIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE-AKIVRTLTGHR 101 (819)
Q Consensus 23 afsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s-~~~i~~l~~h~ 101 (819)
-.+| ...++|.-. ...+.|+|+++.+.+..+.- ...|..=.|-.+..+-++ + +..|+-|+++. ..+++.+..|.
T Consensus 73 IMnP-~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~L~lV-T-~taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 73 IMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALV-T-DNAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp EECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSEEEEE-E-SSEEEEEESSTTCCCEEEEECCG
T ss_pred eeCC-CccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCCeEEEE-c-CCcEEEEcccCCCCCceeeecch
Confidence 3456 556666665 67899999999999988774 467877788655543333 3 57899999974 45666666543
Q ss_pred ----CCeEEEEEecCCCEEEEEEC-------CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC---CCEEEEEEC---C
Q 003445 102 ----SNCISVDFHPFGEFFASGSL-------DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD---GRWVVSGGE---D 164 (819)
Q Consensus 102 ----~~I~sl~fsp~g~~Lasgs~-------Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspd---g~~L~sgs~---D 164 (819)
..|..-..+++.+.++..+- .|.+.+|..+.+ .-+.+.+|......+.+..+ ...++.+.. .
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 226 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 226 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 35666677788887665442 377889998755 45567777654433333211 113333322 2
Q ss_pred CeEEEEECCCC--------eEEEE-Eec---CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeE
Q 003445 165 NTVKLWDLTAG--------KLLHD-FKC---HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRC 232 (819)
Q Consensus 165 g~I~IwDl~t~--------~~i~~-~~~---h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~s 232 (819)
+.++|.++... +.... +.. ...--.++..++.-..++.-+.-|.|++||++++.++..-+-....|-.
T Consensus 227 ~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ 306 (365)
T 2xzh_A 227 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 306 (365)
T ss_dssp EEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred cEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEE
Confidence 68999998432 11222 211 1334567888888888999999999999999999999887666666654
Q ss_pred EEEe
Q 003445 233 LTFN 236 (819)
Q Consensus 233 l~fs 236 (819)
.+-+
T Consensus 307 ta~~ 310 (365)
T 2xzh_A 307 TAPH 310 (365)
T ss_dssp EEEE
T ss_pred eccc
Confidence 4443
No 313
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.30 E-value=0.1 Score=59.44 Aligned_cols=152 Identities=17% Similarity=0.121 Sum_probs=96.9
Q ss_pred eEEEEEcCC-C-CEEEEEECCCeEEEEECCCCeEEEEEcCC---CCCeEEEEE-------ecCCCEEEEEECCC------
Q 003445 62 IDSVSFDSS-E-VLVAAGAASGTIKLWDLEEAKIVRTLTGH---RSNCISVDF-------HPFGEFFASGSLDT------ 123 (819)
Q Consensus 62 V~~l~fspd-g-~~Lasgs~DG~I~IWDl~s~~~i~~l~~h---~~~I~sl~f-------sp~g~~Lasgs~Dg------ 123 (819)
...|+|+|. + +++++....+.|++.|++.+.....+... ......++| ++++++|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 568999983 4 44444444577999999888776555432 235789999 99999777776554
Q ss_pred -cEEEEECCC-CeEE-----EEEecCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECC-------CCeE-----------
Q 003445 124 -NLKIWDIRK-KGCI-----HTYKGHTRGVNAIRFTPD-GRWVVSGGEDNTVKLWDLT-------AGKL----------- 177 (819)
Q Consensus 124 -~I~IwDi~t-~~~i-----~~~~~h~~~I~sl~fspd-g~~L~sgs~Dg~I~IwDl~-------t~~~----------- 177 (819)
.|.+++... +... ..+... .....++++|+ +.++++-..++.|..+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred ceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 266776443 1211 222221 23457788995 5555556677889999987 5543
Q ss_pred EEE-Eec-CCCCeEEEEEeCCCCEEEEE-ECCCeEEEEEC
Q 003445 178 LHD-FKC-HEGQIQCIDFHPHEFLLATG-SADRTVKFWDL 214 (819)
Q Consensus 178 i~~-~~~-h~~~I~sl~fspdg~~Lasg-s~Dg~I~iwDl 214 (819)
... +.. .......++|+|+|.+|+.+ .....|+.+|.
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 112 221 23446899999999965555 45678888654
No 314
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.27 E-value=0.02 Score=60.72 Aligned_cols=208 Identities=9% Similarity=0.057 Sum_probs=108.2
Q ss_pred EEEEEeCCCeEEEEECCCCceEEE-ecCCCCCeEEEEEcCCCCEEEEEEC----C-------CeEEEEECCCCeEEEE--
Q 003445 31 VLVTGGEDHKVNLWAIGKPNAILS-LSGHTSGIDSVSFDSSEVLVAAGAA----S-------GTIKLWDLEEAKIVRT-- 96 (819)
Q Consensus 31 ~Latgs~Dg~V~IWdl~~~~~i~~-l~~h~~~V~~l~fspdg~~Lasgs~----D-------G~I~IWDl~s~~~i~~-- 96 (819)
+++.|+ ..+.+||..+.+.... +..............++.+++.|+. + ..+.+||..+.+....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 455555 5799999988775431 1111122333344457788888874 1 2378889888764322
Q ss_pred EcCCCCCeEEEEEecCCCEEEEEECC--------CcEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEEC-C-
Q 003445 97 LTGHRSNCISVDFHPFGEFFASGSLD--------TNLKIWDIRKKGCIHTYK--GHTRGVNAIRFTPDGRWVVSGGE-D- 164 (819)
Q Consensus 97 l~~h~~~I~sl~fsp~g~~Lasgs~D--------g~I~IwDi~t~~~i~~~~--~h~~~I~sl~fspdg~~L~sgs~-D- 164 (819)
+.........+.+ ++..++.|+.+ ..+.+||+.+.+....-. ..... .+++. -+++.++.|+. +
T Consensus 85 ~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 85 LPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLS-HMDLVYVIGGKGSD 160 (315)
T ss_dssp BSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCTT
T ss_pred CCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEE-ECCEEEEEeCCCCC
Confidence 1111111122222 56667777632 458899998775432211 11111 12222 35667777776 2
Q ss_pred ----CeEEEEECCCCeEEEEEecCCCCe-EEEEEeCCCCEEEEEECCC-----eEEEEECCCCeEEEEeC--CCCCCeeE
Q 003445 165 ----NTVKLWDLTAGKLLHDFKCHEGQI-QCIDFHPHEFLLATGSADR-----TVKFWDLETFELIGSAG--PETSGVRC 232 (819)
Q Consensus 165 ----g~I~IwDl~t~~~i~~~~~h~~~I-~sl~fspdg~~Lasgs~Dg-----~I~iwDl~~~~~l~~~~--~~~~~I~s 232 (819)
..+.+||..+.+-...-....... .+++ .-++++++.|+.++ .+.+||+.+.+-...-. ........
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 239 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSL 239 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred CcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeE
Confidence 468999998775433211111111 1222 22677888887654 58899998765433321 11122222
Q ss_pred EEEeCCCCEEEEEEC
Q 003445 233 LTFNPDGRTLLCGLH 247 (819)
Q Consensus 233 l~fspdg~~Lasgs~ 247 (819)
+.+ ++++++.|+.
T Consensus 240 ~~~--~~~l~v~GG~ 252 (315)
T 4asc_A 240 VSL--VGTLYAIGGF 252 (315)
T ss_dssp EEE--TTEEEEEEEE
T ss_pred EEE--CCEEEEECCc
Confidence 222 5666666643
No 315
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.26 E-value=0.0058 Score=64.74 Aligned_cols=221 Identities=14% Similarity=0.147 Sum_probs=115.4
Q ss_pred CCcEEEEEeCC----CeEEEEECCCCceEEEec--CCCCCeEEEEEcCCCCEEEEEEC----C-----CeEEEEECCCCe
Q 003445 28 SSRVLVTGGED----HKVNLWAIGKPNAILSLS--GHTSGIDSVSFDSSEVLVAAGAA----S-----GTIKLWDLEEAK 92 (819)
Q Consensus 28 ~~~~Latgs~D----g~V~IWdl~~~~~i~~l~--~h~~~V~~l~fspdg~~Lasgs~----D-----G~I~IWDl~s~~ 92 (819)
++.+++.|+.+ ..+.+||..+.+....-. .....-..+.+ ++.+++.|+. + ..+.+||+.+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 55677777642 468899987765443211 11111112222 5667777765 2 468899998776
Q ss_pred EEEE--EcCCCCCeEEEEEecCCCEEEEEECC-----CcEEEEECCCCeEEEEE--ecCCCCeEEEEEcCCCCEEEEEEC
Q 003445 93 IVRT--LTGHRSNCISVDFHPFGEFFASGSLD-----TNLKIWDIRKKGCIHTY--KGHTRGVNAIRFTPDGRWVVSGGE 163 (819)
Q Consensus 93 ~i~~--l~~h~~~I~sl~fsp~g~~Lasgs~D-----g~I~IwDi~t~~~i~~~--~~h~~~I~sl~fspdg~~L~sgs~ 163 (819)
.... +.........+.+ ++..++.|+.+ ..+.+||+.+.+....- ........++.+ ++..++.|+.
T Consensus 102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 177 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF 177 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence 4332 1111222222333 56677776643 35889999877543321 111111222223 5677777765
Q ss_pred C-----CeEEEEECCCCeEEEEEe--cCCCCeEEEEEeCCCCEEEEEECC-----CeEEEEECCCCeEEEEe--CCCCCC
Q 003445 164 D-----NTVKLWDLTAGKLLHDFK--CHEGQIQCIDFHPHEFLLATGSAD-----RTVKFWDLETFELIGSA--GPETSG 229 (819)
Q Consensus 164 D-----g~I~IwDl~t~~~i~~~~--~h~~~I~sl~fspdg~~Lasgs~D-----g~I~iwDl~~~~~l~~~--~~~~~~ 229 (819)
+ ..+.+||+.+.+-...-. ........+.+ ++.+++.|+.+ ..+.+||+.+.+-.... ......
T Consensus 178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 255 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA 255 (308)
T ss_dssp CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence 4 458999998775432211 11111222222 67788887764 46999999876543321 111111
Q ss_pred eeEEEEeCCCCEEEEEECC------CEEEEEecCC
Q 003445 230 VRCLTFNPDGRTLLCGLHE------SLKVFSWEPI 258 (819)
Q Consensus 230 I~sl~fspdg~~Lasgs~d------~I~Vwd~~~~ 258 (819)
. +++.. ++++++.|+.+ .+.+||.++.
T Consensus 256 ~-~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 256 L-GITVH-QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp C-EEEEE-TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred e-EEEEE-CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 2 22222 56666666432 2556665544
No 316
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.21 E-value=0.3 Score=52.98 Aligned_cols=237 Identities=14% Similarity=0.104 Sum_probs=136.3
Q ss_pred cceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceE--EEec----CCCCCeEEEEEcCC---CCEEEE
Q 003445 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI--LSLS----GHTSGIDSVSFDSS---EVLVAA 76 (819)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i--~~l~----~h~~~V~~l~fspd---g~~Las 76 (819)
.+.+..+...-..-+.++|.| +++++++--..|.|++++...+... ..+. ........|+|+|+ +..|+.
T Consensus 21 ~~~~~~va~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv 99 (347)
T 3das_A 21 VKVLRTVATGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYA 99 (347)
T ss_dssp EEEEEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEE
T ss_pred CceeEEeecCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEE
Confidence 455666666677889999999 5666666655899999986555432 2221 23457899999995 344443
Q ss_pred E---ECCCeEEEEECCCC----------eEE-EEEc-CCCCCeEEEEEecCCCEEEEEEC-------------CCcEEEE
Q 003445 77 G---AASGTIKLWDLEEA----------KIV-RTLT-GHRSNCISVDFHPFGEFFASGSL-------------DTNLKIW 128 (819)
Q Consensus 77 g---s~DG~I~IWDl~s~----------~~i-~~l~-~h~~~I~sl~fsp~g~~Lasgs~-------------Dg~I~Iw 128 (819)
. ..++.|.-|.+..+ +.+ ..+. ........|.|.|+|.++++.+. .|.|.-+
T Consensus 100 ~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi 179 (347)
T 3das_A 100 YFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRM 179 (347)
T ss_dssp EEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred EEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEE
Confidence 2 24566777776541 222 2232 11223457999999987776542 3555555
Q ss_pred ECCCC---------eEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCe------------------EEEE
Q 003445 129 DIRKK---------GCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLWDLTAGK------------------LLHD 180 (819)
Q Consensus 129 Di~t~---------~~i~~~~~h~~~I~sl~fspdg~~L~sgs-~Dg~I~IwDl~t~~------------------~i~~ 180 (819)
+.... ..+.. .+|.. ...++|+|+|.+.++-. .++.=.|.-+..+. .+..
T Consensus 180 ~~dG~ip~~nPf~~~~i~a-~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~ 257 (347)
T 3das_A 180 TPDGEPAPGNPFPGSPVYS-YGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQ 257 (347)
T ss_dssp CTTSSBCTTCSSTTCCEEE-BCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEE
T ss_pred eCCCCccCCCCCCCCeEEe-eCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEe
Confidence 55432 11222 24543 56899999887554431 22211222222221 1222
Q ss_pred EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeE----EEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003445 181 FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL----IGSAGPETSGVRCLTFNPDGRTLLCGL 246 (819)
Q Consensus 181 ~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~----l~~~~~~~~~I~sl~fspdg~~Lasgs 246 (819)
+..+......++|. +|.++...-..+.|....+..... ...+......+..+...|||.++++..
T Consensus 258 ~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 258 WSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp ECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 32222355677776 455666655666777777765432 222333446789999999997766654
No 317
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.19 E-value=0.38 Score=60.54 Aligned_cols=278 Identities=13% Similarity=0.113 Sum_probs=157.7
Q ss_pred CCCEEEEEEeeCC-----CcEEEEEeC-CCeEEEEECCCCceEEEecC-CCCCeEEEEEc--CCCCEEEEEECCCeEEEE
Q 003445 16 SSTVNCLKIGRKS-----SRVLVTGGE-DHKVNLWAIGKPNAILSLSG-HTSGIDSVSFD--SSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 16 ~~~V~~lafsp~~-----~~~Latgs~-Dg~V~IWdl~~~~~i~~l~~-h~~~V~~l~fs--pdg~~Lasgs~DG~I~IW 86 (819)
...|.|+++.|.. ..++++|.. |++|+|+++.+.+.+....- ......++.+. ....+|..|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 5689999998632 478999986 99999999987666654331 12234444442 234588899999998766
Q ss_pred ECC--CCeEEE---EEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCe-EEEEEcCC--CCEE
Q 003445 87 DLE--EAKIVR---TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGV-NAIRFTPD--GRWV 158 (819)
Q Consensus 87 Dl~--s~~~i~---~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I-~sl~fspd--g~~L 158 (819)
.++ +|+... .+-| ..++.-..|...+..-+.+..+....+|--+ ++....-- .-..+ ....|+.. .+-+
T Consensus 633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l-~~~~v~~~~~F~se~~~~g~ 709 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNV-NLKEVNYMCPLNSDGYPDSL 709 (1158)
T ss_dssp EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEB-SSSCCCEEEEECCSSSTTEE
T ss_pred EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEecc-ChHHhceEeccCcccCCCcE
Confidence 654 454432 2333 3455555555455443333445555555433 33322211 11223 23345432 2335
Q ss_pred EEEECCCeEEEEECCCCe--EEEEEecCCCCeEEEEEeCCCCEEEEEEC-------------------------------
Q 003445 159 VSGGEDNTVKLWDLTAGK--LLHDFKCHEGQIQCIDFHPHEFLLATGSA------------------------------- 205 (819)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~--~i~~~~~h~~~I~sl~fspdg~~Lasgs~------------------------------- 205 (819)
+.. .++.++|..+..-. .+..+. -...+..++++|..+.++.+..
T Consensus 710 v~~-~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1158)
T 3ei3_A 710 ALA-NNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSK 787 (1158)
T ss_dssp EEE-CSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCC
T ss_pred EEE-cCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccc
Confidence 544 35568888765432 233333 3456788888887665544331
Q ss_pred ------------------CCeEEEEECCCCeEEEEeCCCC-CCeeEEE---EeCC-CCEEEEEE-----C------CCEE
Q 003445 206 ------------------DRTVKFWDLETFELIGSAGPET-SGVRCLT---FNPD-GRTLLCGL-----H------ESLK 251 (819)
Q Consensus 206 ------------------Dg~I~iwDl~~~~~l~~~~~~~-~~I~sl~---fspd-g~~Lasgs-----~------d~I~ 251 (819)
-+.|+++|..+++.+..+.-.. ..+.+++ |..+ ..++++|+ . +.|.
T Consensus 788 ~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~ 867 (1158)
T 3ei3_A 788 LFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIV 867 (1158)
T ss_dssp CC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEE
T ss_pred cccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEE
Confidence 1247788888888776654332 2344444 3322 47888876 1 2388
Q ss_pred EEEecCCceeeeeec-cccceeEeEecCCCEEEEEEcCCeEEEEEecCCc
Q 003445 252 VFSWEPIRCHDAVDV-GWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISR 300 (819)
Q Consensus 252 Vwd~~~~~~~~~~~~-~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~~~ 300 (819)
+|++...+...+... ....+..+...+|+++++. ..+|++|++...+
T Consensus 868 vf~v~~~kL~lv~~~~v~g~v~al~~~~g~Lla~i--g~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 868 VFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASI--NSTVRLYEWTTEK 915 (1158)
T ss_dssp EEEEETTEEEEEEEEEESSCEEEEEEETTEEEEEE--TTEEEEEEECTTS
T ss_pred EEEEECCEEEEEEEEEcCCcCEEEeeeCCEEEEEc--CCEEEEEECCCCc
Confidence 999874433322211 1244566666677555443 4689999998765
No 318
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.11 E-value=0.13 Score=55.73 Aligned_cols=142 Identities=16% Similarity=0.205 Sum_probs=82.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE--EEEEc---CCCCCeEEEEEecC---CCEEEEEEC-C-----Cc
Q 003445 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI--VRTLT---GHRSNCISVDFHPF---GEFFASGSL-D-----TN 124 (819)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~--i~~l~---~h~~~I~sl~fsp~---g~~Lasgs~-D-----g~ 124 (819)
-.....++|.|+++++++ ...|.|.+++ +++. +..+. ........|+|+|+ +..|.++.. . +.
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345789999999996655 6779999998 4442 22221 12346789999998 445444433 2 67
Q ss_pred EEEEECCCCe-----EEE-EEe---cCCCCeEEEEEcCCCCEEEEEEC-------------CCeEEEEECCCC-------
Q 003445 125 LKIWDIRKKG-----CIH-TYK---GHTRGVNAIRFTPDGRWVVSGGE-------------DNTVKLWDLTAG------- 175 (819)
Q Consensus 125 I~IwDi~t~~-----~i~-~~~---~h~~~I~sl~fspdg~~L~sgs~-------------Dg~I~IwDl~t~------- 175 (819)
|..|+..... .+. .+. ........++|.|||.++++.+. .|.|.-+|....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 8888876431 122 233 11123468999999976665432 256666665430
Q ss_pred ------e-EEEEEecCCCCeEEEEEeC-CCCEEEEEEC
Q 003445 176 ------K-LLHDFKCHEGQIQCIDFHP-HEFLLATGSA 205 (819)
Q Consensus 176 ------~-~i~~~~~h~~~I~sl~fsp-dg~~Lasgs~ 205 (819)
. .+.. .++ .....++|+| ++.++++-..
T Consensus 187 ~~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g 222 (352)
T 2ism_A 187 LGRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHG 222 (352)
T ss_dssp TTCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEEC
T ss_pred cCCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcC
Confidence 0 1111 122 2356789999 5665555443
No 319
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.10 E-value=0.021 Score=60.34 Aligned_cols=225 Identities=15% Similarity=0.134 Sum_probs=118.4
Q ss_pred CCCEEEEEEC----CCeEEEEECCCCeEEEE--EcCCCCCeEEEEEecCCCEEEEEEC----C-----CcEEEEECCCCe
Q 003445 70 SEVLVAAGAA----SGTIKLWDLEEAKIVRT--LTGHRSNCISVDFHPFGEFFASGSL----D-----TNLKIWDIRKKG 134 (819)
Q Consensus 70 dg~~Lasgs~----DG~I~IWDl~s~~~i~~--l~~h~~~I~sl~fsp~g~~Lasgs~----D-----g~I~IwDi~t~~ 134 (819)
++.+++.|+. -..+.+||..+.+.... +....... +++.. ++..++.|+. + ..+.+||+.+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 5566666663 24688999887764432 11111112 22222 5666777665 2 468899998775
Q ss_pred EEEEE--ecCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEEEecC--CCCeEEEEEeCCCCEEEEEEC
Q 003445 135 CIHTY--KGHTRGVNAIRFTPDGRWVVSGGED-----NTVKLWDLTAGKLLHDFKCH--EGQIQCIDFHPHEFLLATGSA 205 (819)
Q Consensus 135 ~i~~~--~~h~~~I~sl~fspdg~~L~sgs~D-----g~I~IwDl~t~~~i~~~~~h--~~~I~sl~fspdg~~Lasgs~ 205 (819)
....- .........+.+ +++.++.|+.+ ..+.+||..+.+-...-... ......+.+ ++.+++.|+.
T Consensus 102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 177 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF 177 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence 43321 111111222222 56777776643 36889999877543321111 111122222 6777777775
Q ss_pred C-----CeEEEEECCCCeEEEE--eCCCCCCeeEEEEeCCCCEEEEEEC------CCEEEEEecCCceeeeeeccccc-e
Q 003445 206 D-----RTVKFWDLETFELIGS--AGPETSGVRCLTFNPDGRTLLCGLH------ESLKVFSWEPIRCHDAVDVGWSR-L 271 (819)
Q Consensus 206 D-----g~I~iwDl~~~~~l~~--~~~~~~~I~sl~fspdg~~Lasgs~------d~I~Vwd~~~~~~~~~~~~~~s~-i 271 (819)
+ ..+.+||+.+.+-... +.........+.+ ++++++.|+. +.+.+||.++.+-...-...... .
T Consensus 178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 255 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA 255 (308)
T ss_dssp CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence 4 4589999987654322 1111122223333 6666666643 34788887766544332222111 1
Q ss_pred eEeEecCCCEEEEEEcC-----CeEEEEEecCCcee
Q 003445 272 SDLNVHEGKLLGCSYNQ-----SCVGVWVVDISRIE 302 (819)
Q Consensus 272 ~~l~~~dg~lLa~~~~D-----g~V~IW~ld~~~~~ 302 (819)
..+...++++++.|+.+ ..+.+||+...+-.
T Consensus 256 ~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 256 LGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp CEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred eEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 22334577888887654 35666776665544
No 320
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.01 E-value=0.035 Score=60.58 Aligned_cols=199 Identities=12% Similarity=0.189 Sum_probs=118.4
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEE------------ECCCeEEEEECCC--CeEE-EEEcC-----CCCCeEEEEEec--C
Q 003445 55 LSGHTSGIDSVSFDSSEVLVAAG------------AASGTIKLWDLEE--AKIV-RTLTG-----HRSNCISVDFHP--F 112 (819)
Q Consensus 55 l~~h~~~V~~l~fspdg~~Lasg------------s~DG~I~IWDl~s--~~~i-~~l~~-----h~~~I~sl~fsp--~ 112 (819)
+.+-......+...++|..++++ ..+|.|.++|+.+ .+.. ..+.+ ..-....+.+.+ +
T Consensus 45 i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d 124 (355)
T 3sre_A 45 VKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD 124 (355)
T ss_dssp CTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT
T ss_pred eCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC
Confidence 44434456778888887655554 1689999999973 2321 12332 123566777766 3
Q ss_pred CC-EEEEEE-C--CCcEEEEECCCC--e--EEEEEecC-CCCeEEEEEcCCCCEEEEEE-----------------CCCe
Q 003445 113 GE-FFASGS-L--DTNLKIWDIRKK--G--CIHTYKGH-TRGVNAIRFTPDGRWVVSGG-----------------EDNT 166 (819)
Q Consensus 113 g~-~Lasgs-~--Dg~I~IwDi~t~--~--~i~~~~~h-~~~I~sl~fspdg~~L~sgs-----------------~Dg~ 166 (819)
+. +|+++. . +..|-+|++... . .+..+.+. -...+.+.+.++|.+.++.. ..|.
T Consensus 125 g~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~ 204 (355)
T 3sre_A 125 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSF 204 (355)
T ss_dssp CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEE
T ss_pred CcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccE
Confidence 54 344443 2 456777766543 2 23334332 23578999999998777653 1255
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCC-CeE--EEEeCCCCCCeeEEEEeC-CCCE
Q 003445 167 VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLET-FEL--IGSAGPETSGVRCLTFNP-DGRT 241 (819)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs-~Dg~I~iwDl~~-~~~--l~~~~~~~~~I~sl~fsp-dg~~ 241 (819)
|..+|.. +...... .-...+.++|+||++.|+.+. ..+.|+.|++.. +.. ...+ ...+..-.+++.+ +|++
T Consensus 205 vyr~d~~--~~~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 205 VTYYSPN--DVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDL 280 (355)
T ss_dssp EEEECTT--CCEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCE
T ss_pred EEEEECC--eEEEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcE
Confidence 6666653 3222222 234568999999998777665 568999999863 332 2223 2245578899999 5998
Q ss_pred EEEEECCCEEEEEecC
Q 003445 242 LLCGLHESLKVFSWEP 257 (819)
Q Consensus 242 Lasgs~d~I~Vwd~~~ 257 (819)
.+++..++.+|+.+++
T Consensus 281 wva~~~~g~~v~~~~P 296 (355)
T 3sre_A 281 WVGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEEEESCHHHHHSCCT
T ss_pred EEEecCCceEEEEECC
Confidence 8866655444443333
No 321
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.00 E-value=0.31 Score=51.72 Aligned_cols=244 Identities=9% Similarity=0.037 Sum_probs=132.5
Q ss_pred eCCCcEEEEEe-CCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC--------------CeEEEEECCC
Q 003445 26 RKSSRVLVTGG-EDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS--------------GTIKLWDLEE 90 (819)
Q Consensus 26 p~~~~~Latgs-~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D--------------G~I~IWDl~s 90 (819)
.+++.+.++.. .++.|...+..... ...+... .+--|++++..|+-.... ..|+..++..
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 33555444442 34566666654333 3333321 234457788877776543 4677788776
Q ss_pred CeEEEEEcCCCCCeEEEEEecCCCEEEEEE----CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC-CC
Q 003445 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGS----LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE-DN 165 (819)
Q Consensus 91 ~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs----~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~-Dg 165 (819)
.+...... .. +..|++++++|+-.. .+..|+..++.... ...+..+.. ..|+++++.|+-.+. ..
T Consensus 98 ~~~~~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 98 HGSTVLDP---DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp CCCEEEEC---SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred CcceEeec---CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence 65433222 11 236778888888765 34466666776443 333443332 356778888886665 57
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECC--CeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEE
Q 003445 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD--RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL 243 (819)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~D--g~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~La 243 (819)
.|...++..+.....+. +... ..++|++.+|+-...+ ..|..-++...... .+. ...+ ..|+|+|..|+
T Consensus 168 ~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt--~~~~--~~~~~~g~~Iy 238 (302)
T 3s25_A 168 QLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV-VLT--EANI--EHYNVYGSLIF 238 (302)
T ss_dssp CEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCE-ECS--CSCE--EEEEEETTEEE
T ss_pred eEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeE-EEe--CCCc--ceEEECCCEEE
Confidence 89999988765443333 2222 3466988888877644 35766677655432 222 1223 34788899988
Q ss_pred EEECC-C--EEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEEe
Q 003445 244 CGLHE-S--LKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 296 (819)
Q Consensus 244 sgs~d-~--I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~l 296 (819)
.+.+. . |..-+++......+... .+..+...++.+..+-...+.|..-.+
T Consensus 239 ~~~~~~~~~i~~~~~DG~~r~~l~~~---~~~~i~i~~d~Iy~td~~~~~i~~~~~ 291 (302)
T 3s25_A 239 YQRGGDNPALCVVKNDGTGFKELAKG---EFCNINVTSQYVYFTDFVSNKEYCTST 291 (302)
T ss_dssp EEECSSSCEEEEEETTSCCCEEEEES---CEEEEEECSSEEEEEETTTCCEEEEES
T ss_pred EEECCCCcEEEEEECCCCccEEeeCC---ccceEEEeCCEEEEEECCCCeEEEEEC
Confidence 76443 2 44444443332222221 122344444444444444444433333
No 322
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.98 E-value=0.68 Score=51.42 Aligned_cols=207 Identities=11% Similarity=0.135 Sum_probs=134.9
Q ss_pred EEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CeEEEEEcCCC
Q 003445 23 KIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE-AKIVRTLTGHR 101 (819)
Q Consensus 23 afsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s-~~~i~~l~~h~ 101 (819)
-.+| ..+++|.-. ..++.|+|+++...+..+.- ...|..=.|-.+.. |+..+ +..|+-|+++. ..+++.+..|.
T Consensus 72 IMnP-~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~~-l~lVT-~taVyHWsi~~~s~P~kvFdR~~ 146 (494)
T 1bpo_A 72 IMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (494)
T ss_dssp EECS-SSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETTE-EEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred eeCC-CCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCCe-EEEEc-CCeeEEecccCCCCchhheecch
Confidence 3455 445566554 68899999999999988774 44677777754443 33332 67899999974 35666666543
Q ss_pred ----CCeEEEEEecCCCEEEEEE-------CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCC---CEEEEEEC---C
Q 003445 102 ----SNCISVDFHPFGEFFASGS-------LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDG---RWVVSGGE---D 164 (819)
Q Consensus 102 ----~~I~sl~fsp~g~~Lasgs-------~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg---~~L~sgs~---D 164 (819)
..|..-..+++.+.++..+ ..|.+.+|..+.+ .-+.+.+|......+.+..+. ..++.+.. .
T Consensus 147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 225 (494)
T 1bpo_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (494)
T ss_dssp GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 4566777788888766543 2477889998755 355677776655444443211 23344433 3
Q ss_pred CeEEEEECCCC--------eEEEEEe-c---CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeE
Q 003445 165 NTVKLWDLTAG--------KLLHDFK-C---HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRC 232 (819)
Q Consensus 165 g~I~IwDl~t~--------~~i~~~~-~---h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~s 232 (819)
+.++|.++... +....+. . ...--.++..++.-..++.-+.-|.|++||++++.++..-+-....|-.
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~ 305 (494)
T 1bpo_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 305 (494)
T ss_dssp CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEE
Confidence 78999998532 1122211 1 1234568888998888999999999999999999998876655555444
Q ss_pred EEE
Q 003445 233 LTF 235 (819)
Q Consensus 233 l~f 235 (819)
.+.
T Consensus 306 t~~ 308 (494)
T 1bpo_A 306 TAP 308 (494)
T ss_dssp EEE
T ss_pred ecc
Confidence 333
No 323
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.95 E-value=0.053 Score=57.41 Aligned_cols=183 Identities=12% Similarity=0.096 Sum_probs=96.1
Q ss_pred EEEEEeCCCeEEEEECCCCceEEE-ecCCCCCeEEEEEcCCCCEEEEEEC----CC-------eEEEEECCCCeEEEE--
Q 003445 31 VLVTGGEDHKVNLWAIGKPNAILS-LSGHTSGIDSVSFDSSEVLVAAGAA----SG-------TIKLWDLEEAKIVRT-- 96 (819)
Q Consensus 31 ~Latgs~Dg~V~IWdl~~~~~i~~-l~~h~~~V~~l~fspdg~~Lasgs~----DG-------~I~IWDl~s~~~i~~-- 96 (819)
+++.|+. .+.+||..+.+.... +..............++.+++.|+. ++ .+.+||..+.+....
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 4455553 488999987775442 1111122233334457778888873 12 277889887765432
Q ss_pred EcCCCCCeEEEEEecCCCEEEEEECC-------CcEEEEECCCCeEEEEEecCCCC-eEEEEEcCCCCEEEEEEC-----
Q 003445 97 LTGHRSNCISVDFHPFGEFFASGSLD-------TNLKIWDIRKKGCIHTYKGHTRG-VNAIRFTPDGRWVVSGGE----- 163 (819)
Q Consensus 97 l~~h~~~I~sl~fsp~g~~Lasgs~D-------g~I~IwDi~t~~~i~~~~~h~~~-I~sl~fspdg~~L~sgs~----- 163 (819)
+.........+.+ ++..++.|+.+ ..+.+||+.+.+....-...... -.+++. .+++.++.|+.
T Consensus 96 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 96 LPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp BSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSC
T ss_pred CCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCC
Confidence 1111112222222 56777777754 25888999877644321111110 112222 35667777764
Q ss_pred -CCeEEEEECCCCeEEEEEecCCCC-eEEEEEeCCCCEEEEEECC-----CeEEEEECCCCeE
Q 003445 164 -DNTVKLWDLTAGKLLHDFKCHEGQ-IQCIDFHPHEFLLATGSAD-----RTVKFWDLETFEL 219 (819)
Q Consensus 164 -Dg~I~IwDl~t~~~i~~~~~h~~~-I~sl~fspdg~~Lasgs~D-----g~I~iwDl~~~~~ 219 (819)
-..+.+||..+.+-...-...... -.+++. -++.+++.|+.+ ..+.+||+.+.+-
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred ccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 235899999887643321111111 112222 266777777653 3578899887653
No 324
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.94 E-value=0.084 Score=55.77 Aligned_cols=210 Identities=13% Similarity=0.065 Sum_probs=106.7
Q ss_pred EEEEEECCCeEEEEECCCCeEEE-EEcCCCCCeEEEEEecCCCEEEEEEC----C-------CcEEEEECCCCeEEEEEe
Q 003445 73 LVAAGAASGTIKLWDLEEAKIVR-TLTGHRSNCISVDFHPFGEFFASGSL----D-------TNLKIWDIRKKGCIHTYK 140 (819)
Q Consensus 73 ~Lasgs~DG~I~IWDl~s~~~i~-~l~~h~~~I~sl~fsp~g~~Lasgs~----D-------g~I~IwDi~t~~~i~~~~ 140 (819)
+++.|+ ..+.+||..+++... .+..............++..++.|+. + ..+..||..+.+.... .
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM-P 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC-C
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC-C
Confidence 444554 679999999887543 12111122223333446777888873 1 1278899987764322 1
Q ss_pred cCCCC--eEEEEEcCCCCEEEEEECC--------CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC-C---
Q 003445 141 GHTRG--VNAIRFTPDGRWVVSGGED--------NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA-D--- 206 (819)
Q Consensus 141 ~h~~~--I~sl~fspdg~~L~sgs~D--------g~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~-D--- 206 (819)
.-..+ -.+++.. ++..++.|+.+ ..+.+||..+.+-...-..........+..-++++++.|+. +
T Consensus 84 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 162 (315)
T 4asc_A 84 PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRK 162 (315)
T ss_dssp CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSC
T ss_pred CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCc
Confidence 11111 1122222 56666777632 45899999887533221111111111122246677777775 2
Q ss_pred --CeEEEEECCCCeEEEE--eCCCCCCeeEEEEeCCCCEEEEEECC------CEEEEEecCCceeeeeeccccce-eEeE
Q 003445 207 --RTVKFWDLETFELIGS--AGPETSGVRCLTFNPDGRTLLCGLHE------SLKVFSWEPIRCHDAVDVGWSRL-SDLN 275 (819)
Q Consensus 207 --g~I~iwDl~~~~~l~~--~~~~~~~I~sl~fspdg~~Lasgs~d------~I~Vwd~~~~~~~~~~~~~~s~i-~~l~ 275 (819)
..+.+||..+.+-... +.........+.+ ++++++.|+.+ .+.+||.++.+-...-....... ..+.
T Consensus 163 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 240 (315)
T 4asc_A 163 CLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLV 240 (315)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred ccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEE
Confidence 4699999987654332 1111111222222 66666666533 36667766654333322221111 2234
Q ss_pred ecCCCEEEEEEcC
Q 003445 276 VHEGKLLGCSYNQ 288 (819)
Q Consensus 276 ~~dg~lLa~~~~D 288 (819)
..++++++.|+.+
T Consensus 241 ~~~~~l~v~GG~~ 253 (315)
T 4asc_A 241 SLVGTLYAIGGFA 253 (315)
T ss_dssp EETTEEEEEEEEE
T ss_pred EECCEEEEECCcc
Confidence 4677888877753
No 325
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.94 E-value=0.54 Score=50.94 Aligned_cols=224 Identities=17% Similarity=0.172 Sum_probs=118.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEEc---CCCCCeEEEEEecC---CCEEEEEEC----C----C
Q 003445 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK-IVRTLT---GHRSNCISVDFHPF---GEFFASGSL----D----T 123 (819)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~-~i~~l~---~h~~~I~sl~fsp~---g~~Lasgs~----D----g 123 (819)
-.....++|.|+++++++ ..+|.|.++| .+++ .+..+. ........|+|+|+ +..|.++.. + +
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 345789999999985554 6679999997 4454 222221 12346789999997 445444432 3 5
Q ss_pred cEEEEECCCC-------eEE-EEEec-CCCCeEEEEEcCCCCEEEEEEC-------------CCeEEEEECCCC------
Q 003445 124 NLKIWDIRKK-------GCI-HTYKG-HTRGVNAIRFTPDGRWVVSGGE-------------DNTVKLWDLTAG------ 175 (819)
Q Consensus 124 ~I~IwDi~t~-------~~i-~~~~~-h~~~I~sl~fspdg~~L~sgs~-------------Dg~I~IwDl~t~------ 175 (819)
.|..|+.... +.+ ..+.. .......|+|.|||.++++.+. .|.|.-+|....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6888877644 112 11221 1122467999999987666432 245666665422
Q ss_pred ---eEEEEEecCCCCeEEEEEeC-CCCEEEEEECCC---eEEEEECCC--------C--------eEEEEeCCCCCCeeE
Q 003445 176 ---KLLHDFKCHEGQIQCIDFHP-HEFLLATGSADR---TVKFWDLET--------F--------ELIGSAGPETSGVRC 232 (819)
Q Consensus 176 ---~~i~~~~~h~~~I~sl~fsp-dg~~Lasgs~Dg---~I~iwDl~~--------~--------~~l~~~~~~~~~I~s 232 (819)
..+.. .++. ....++|+| ++.++++-...+ .|.+...-. + .++..+.........
T Consensus 186 f~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G 263 (354)
T 3a9g_A 186 FPNSPIWS-YGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG 263 (354)
T ss_dssp STTCCEEE-ECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred CCCCcEEE-EccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence 01211 2232 346899999 566555433221 243332110 0 122223122345778
Q ss_pred EEEe-------CCCCEEEEEECC-CEEEEEecCC-cee---eeeeccccceeEeEe-cCCCEEEEEE
Q 003445 233 LTFN-------PDGRTLLCGLHE-SLKVFSWEPI-RCH---DAVDVGWSRLSDLNV-HEGKLLGCSY 286 (819)
Q Consensus 233 l~fs-------pdg~~Lasgs~d-~I~Vwd~~~~-~~~---~~~~~~~s~i~~l~~-~dg~lLa~~~ 286 (819)
++|. .+|.++++...+ .|..++++.. +.. ..+...+.....+.. +||.++++..
T Consensus 264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred eEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 8883 467665554333 4666666643 221 122222444455544 5666555554
No 326
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.84 E-value=1.3 Score=52.69 Aligned_cols=224 Identities=13% Similarity=0.116 Sum_probs=135.2
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~ 96 (819)
..|.++.... ++ .|..|+.+| +..||..+.+...........|.++.. .++ .|..|+.+ -|..+|..+++....
T Consensus 63 ~~i~~i~~d~-~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~ 136 (758)
T 3ott_A 63 TRIYCGVIID-NT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSF 136 (758)
T ss_dssp SCEEEEEEET-TT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEE
T ss_pred ceEEEEEEcC-CC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEe
Confidence 4688887765 33 567777665 889998765432211112335777754 344 56666665 588899877664432
Q ss_pred Ec----CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecC------CCCeEEEEEcCCCCEEEEEECCCe
Q 003445 97 LT----GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH------TRGVNAIRFTPDGRWVVSGGEDNT 166 (819)
Q Consensus 97 l~----~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h------~~~I~sl~fspdg~~L~sgs~Dg~ 166 (819)
.. .....|.++....++.+.+ |+.+ -|..||..++.... +... ...|.++....++..|..|+. +-
T Consensus 137 ~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~G 212 (758)
T 3ott_A 137 DTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GY 212 (758)
T ss_dssp CHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EE
T ss_pred ccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CC
Confidence 11 1234688888877776544 5554 48889987765432 2211 124888888877776666664 46
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeC-------CCCCCeeEEEEeCCC
Q 003445 167 VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG-------PETSGVRCLTFNPDG 239 (819)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~-------~~~~~I~sl~fspdg 239 (819)
|..+|..+++...........|.++....+|.+.+ |+.+ -+.+|+..+.+...... .....|.++....+|
T Consensus 213 l~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g 290 (758)
T 3ott_A 213 LFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEH 290 (758)
T ss_dssp EEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTC
T ss_pred CeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCC
Confidence 88899887754322111234578888777776554 4444 58889887654332211 123458899888888
Q ss_pred CEEEEEECCCEEEE
Q 003445 240 RTLLCGLHESLKVF 253 (819)
Q Consensus 240 ~~Lasgs~d~I~Vw 253 (819)
.+.+ |+.+++.++
T Consensus 291 ~lWi-GT~~Gl~~~ 303 (758)
T 3ott_A 291 NIWL-GTDYGISLS 303 (758)
T ss_dssp CEEE-EESSSEEEE
T ss_pred CEEE-EeCCccccc
Confidence 7555 445566554
No 327
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.82 E-value=0.1 Score=55.14 Aligned_cols=211 Identities=13% Similarity=0.089 Sum_probs=104.7
Q ss_pred EEEEEECCCeEEEEECCCCeEEEE-EcCCCCCeEEEEEecCCCEEEEEEC----CC-------cEEEEECCCCeEEEEEe
Q 003445 73 LVAAGAASGTIKLWDLEEAKIVRT-LTGHRSNCISVDFHPFGEFFASGSL----DT-------NLKIWDIRKKGCIHTYK 140 (819)
Q Consensus 73 ~Lasgs~DG~I~IWDl~s~~~i~~-l~~h~~~I~sl~fsp~g~~Lasgs~----Dg-------~I~IwDi~t~~~i~~~~ 140 (819)
+++.|+. .+.+||..+.+.... +..............++..++.|+. ++ .+..||..+.+....-.
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 4444443 488999988875442 2211122222233446777888873 12 27788988776433211
Q ss_pred c-CCCCeEEEEEcCCCCEEEEEECC-------CeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC------C
Q 003445 141 G-HTRGVNAIRFTPDGRWVVSGGED-------NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA------D 206 (819)
Q Consensus 141 ~-h~~~I~sl~fspdg~~L~sgs~D-------g~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~------D 206 (819)
. ....-.+++.. ++..++.|+.+ ..+.+||..+.+-...-..........+...++.+++.|+. -
T Consensus 96 ~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 174 (318)
T 2woz_A 96 LPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCT 174 (318)
T ss_dssp BSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBC
T ss_pred CCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCcc
Confidence 1 11111122222 56777777754 35888999877644321111111111112246777777764 2
Q ss_pred CeEEEEECCCCeEEEE--eCCCCCCeeEEEEeCCCCEEEEEEC------CCEEEEEecCCceeeeeeccccc-eeEeEec
Q 003445 207 RTVKFWDLETFELIGS--AGPETSGVRCLTFNPDGRTLLCGLH------ESLKVFSWEPIRCHDAVDVGWSR-LSDLNVH 277 (819)
Q Consensus 207 g~I~iwDl~~~~~l~~--~~~~~~~I~sl~fspdg~~Lasgs~------d~I~Vwd~~~~~~~~~~~~~~s~-i~~l~~~ 277 (819)
..+.+||..+.+-... +........ ++.. ++++++.|+. +.+.+||.++.+-...-...... ...+...
T Consensus 175 ~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 252 (318)
T 2woz_A 175 NRVFIYNPKKGDWKDLAPMKTPRSMFG-VAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL 252 (318)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCE-EEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE
T ss_pred ceEEEEcCCCCEEEECCCCCCCcccce-EEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE
Confidence 3599999988654332 221112122 2222 5666666643 23567776665433322221111 1233446
Q ss_pred CCCEEEEEEcC
Q 003445 278 EGKLLGCSYNQ 288 (819)
Q Consensus 278 dg~lLa~~~~D 288 (819)
++++++.|+.+
T Consensus 253 ~~~i~v~GG~~ 263 (318)
T 2woz_A 253 AGSLYAIGGFA 263 (318)
T ss_dssp TTEEEEECCBC
T ss_pred CCEEEEECCee
Confidence 77787777654
No 328
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.65 E-value=0.059 Score=58.77 Aligned_cols=193 Identities=15% Similarity=0.193 Sum_probs=114.8
Q ss_pred CEEEEEEeeCCCcEEEEE------------eCCCeEEEEECCCC--ceE-EEecC-----CCCCeEEEEEcC--CCC-EE
Q 003445 18 TVNCLKIGRKSSRVLVTG------------GEDHKVNLWAIGKP--NAI-LSLSG-----HTSGIDSVSFDS--SEV-LV 74 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latg------------s~Dg~V~IWdl~~~--~~i-~~l~~-----h~~~V~~l~fsp--dg~-~L 74 (819)
....+++.| ++..++++ ..+|.|.++|..+. +.. ..+.+ ..-....+.+.+ ++. +|
T Consensus 51 G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 345667777 55544444 16899999998632 221 12222 123567777755 453 34
Q ss_pred EEE-EC--CCeEEEEECCCC--e--EEEEEcCC-CCCeEEEEEecCCCEEEEEEC-----------------CCcEEEEE
Q 003445 75 AAG-AA--SGTIKLWDLEEA--K--IVRTLTGH-RSNCISVDFHPFGEFFASGSL-----------------DTNLKIWD 129 (819)
Q Consensus 75 asg-s~--DG~I~IWDl~s~--~--~i~~l~~h-~~~I~sl~fsp~g~~Lasgs~-----------------Dg~I~IwD 129 (819)
+++ .. +.+|.+|+++.+ . .+..+.+. -.....+.+.++|.++++... .|.|+.||
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 443 22 467788777543 2 23344432 235789999999987776541 24566666
Q ss_pred CCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCC-CeE--EEEEecCCCCeEEEEEeC-CCCEEEEEE
Q 003445 130 IRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLWDLTA-GKL--LHDFKCHEGQIQCIDFHP-HEFLLATGS 204 (819)
Q Consensus 130 i~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs-~Dg~I~IwDl~t-~~~--i~~~~~h~~~I~sl~fsp-dg~~Lasgs 204 (819)
.. +...... .-..-+.++|+||+++|+.+. ..+.|..||+.. ++. ...+. ..+..-.+++.+ +|++.+++.
T Consensus 210 ~~--~~~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 210 PN--DVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp TT--CCEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEE
T ss_pred CC--eEEEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEec
Confidence 53 3222222 234568999999999887765 467899999863 332 22332 345678899998 588777666
Q ss_pred CC-CeEEEEECC
Q 003445 205 AD-RTVKFWDLE 215 (819)
Q Consensus 205 ~D-g~I~iwDl~ 215 (819)
.+ +.|..||..
T Consensus 286 ~~g~~v~~~~P~ 297 (355)
T 3sre_A 286 PNGMRIFFYDAE 297 (355)
T ss_dssp SCHHHHHSCCTT
T ss_pred CCceEEEEECCC
Confidence 44 355555544
No 329
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.55 E-value=0.036 Score=59.70 Aligned_cols=227 Identities=11% Similarity=0.054 Sum_probs=114.8
Q ss_pred CCcEEEEEeCC-CeEEEEECCC--CceEEEecCCC----CCeEEEEEcCCCCEEEEEEC-C---------CeEEEEECCC
Q 003445 28 SSRVLVTGGED-HKVNLWAIGK--PNAILSLSGHT----SGIDSVSFDSSEVLVAAGAA-S---------GTIKLWDLEE 90 (819)
Q Consensus 28 ~~~~Latgs~D-g~V~IWdl~~--~~~i~~l~~h~----~~V~~l~fspdg~~Lasgs~-D---------G~I~IWDl~s 90 (819)
++.+++.|+.+ ..+.+||... .+. ..+..-. ..-.++.+ ++.+++.|+. + ..+.+||+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W-~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKW-TALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCE-EECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCe-eECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 56667777643 4688889864 322 2222111 11222222 5667777765 2 4689999988
Q ss_pred CeEEEEEc---CCCCCeEEEEEecCCCEEEEEECC---------------------------------------CcEEEE
Q 003445 91 AKIVRTLT---GHRSNCISVDFHPFGEFFASGSLD---------------------------------------TNLKIW 128 (819)
Q Consensus 91 ~~~i~~l~---~h~~~I~sl~fsp~g~~Lasgs~D---------------------------------------g~I~Iw 128 (819)
.+....-. .......++. .++++++.|+.+ ..+.+|
T Consensus 96 ~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 173 (357)
T 2uvk_A 96 NSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF 173 (357)
T ss_dssp TEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEE
T ss_pred CcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEE
Confidence 76443221 1111222222 467778888764 478999
Q ss_pred ECCCCeEEEEEecC-CCCe-EEEEEcCCCCEEEEEEC------CCeEEEEEC--CCCeEEEEEec---CCCCeEEEEEeC
Q 003445 129 DIRKKGCIHTYKGH-TRGV-NAIRFTPDGRWVVSGGE------DNTVKLWDL--TAGKLLHDFKC---HEGQIQCIDFHP 195 (819)
Q Consensus 129 Di~t~~~i~~~~~h-~~~I-~sl~fspdg~~L~sgs~------Dg~I~IwDl--~t~~~i~~~~~---h~~~I~sl~fsp 195 (819)
|+.+.+....-... .... .+++.. +++.++.|+. ...+.+||+ .+.+-.. +.. ........+...
T Consensus 174 d~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~-~~~~~~~~~~~~~~~~~~ 251 (357)
T 2uvk_A 174 DPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNK-LAPVSSPDGVAGGFAGIS 251 (357)
T ss_dssp ETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEE-CCCSSTTTCCBSCEEEEE
T ss_pred eCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEe-cCCCCCCcccccceEEEE
Confidence 99877644332211 1111 233333 5666666653 345777887 4433222 111 111111112234
Q ss_pred CCCEEEEEECC----------------------CeEEEEECCCC--eEEEEeCCCCCCeeEEEEeCCCCEEEEEECC---
Q 003445 196 HEFLLATGSAD----------------------RTVKFWDLETF--ELIGSAGPETSGVRCLTFNPDGRTLLCGLHE--- 248 (819)
Q Consensus 196 dg~~Lasgs~D----------------------g~I~iwDl~~~--~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d--- 248 (819)
++.+++.|+.+ ..+.+||+.+. ..+..+........++ .-++++++.|+.+
T Consensus 252 ~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~ 329 (357)
T 2uvk_A 252 NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETAGG 329 (357)
T ss_dssp TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECGGG
T ss_pred CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCCCC
Confidence 66777777632 25788998764 4444443333322232 3467777766532
Q ss_pred ----CEEEEEecCCceeee
Q 003445 249 ----SLKVFSWEPIRCHDA 263 (819)
Q Consensus 249 ----~I~Vwd~~~~~~~~~ 263 (819)
.+.++++++.+....
T Consensus 330 ~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 330 KAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp CEEEEEEEEEC-CCSCEEE
T ss_pred CEeeeEEEEEEcCcEeEee
Confidence 255567777665544
No 330
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.50 E-value=3 Score=52.41 Aligned_cols=220 Identities=15% Similarity=0.201 Sum_probs=127.5
Q ss_pred EEEEEECCCeEEEEECCCCe--EEEEEcCCCCCeEEEEEecCCCEEEEEECC----------------------------
Q 003445 73 LVAAGAASGTIKLWDLEEAK--IVRTLTGHRSNCISVDFHPFGEFFASGSLD---------------------------- 122 (819)
Q Consensus 73 ~Lasgs~DG~I~IWDl~s~~--~i~~l~~h~~~I~sl~fsp~g~~Lasgs~D---------------------------- 122 (819)
-++.. .++.++|..++... .++++. -...+..++++|..+.++.+..+
T Consensus 708 g~v~~-~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1158)
T 3ei3_A 708 SLALA-NNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSS 785 (1158)
T ss_dssp EEEEE-CSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECC
T ss_pred cEEEE-cCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccc
Confidence 34433 35668888875432 233333 34567788888877655543311
Q ss_pred ---------------------CcEEEEECCCCeEEEEEecC-CCCeEEEE---EcCC-CCEEEEEE----------CCCe
Q 003445 123 ---------------------TNLKIWDIRKKGCIHTYKGH-TRGVNAIR---FTPD-GRWVVSGG----------EDNT 166 (819)
Q Consensus 123 ---------------------g~I~IwDi~t~~~i~~~~~h-~~~I~sl~---fspd-g~~L~sgs----------~Dg~ 166 (819)
+.|+++|..+++.+..+.-. ...+.+++ |..+ ..+|+.|+ ..|.
T Consensus 786 ~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gr 865 (1158)
T 3ei3_A 786 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGR 865 (1158)
T ss_dssp CCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEE
T ss_pred cccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceE
Confidence 24777887777777666432 23345554 3322 46888876 3588
Q ss_pred EEEEECCCCeEEEEEe-cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEE-EeCCCCCCeeEEEEeCCCCEEEE
Q 003445 167 VKLWDLTAGKLLHDFK-CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIG-SAGPETSGVRCLTFNPDGRTLLC 244 (819)
Q Consensus 167 I~IwDl~t~~~i~~~~-~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~-~~~~~~~~I~sl~fspdg~~Las 244 (819)
|++|++..++.....+ ...+++++++-- +| +|++|- ..+|++|++...+.+. ..... ..|..+.....|.++++
T Consensus 866 i~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~-~~i~~~~l~~~~~~I~v 941 (1158)
T 3ei3_A 866 IVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHY-NNIMALYLKTKGDFILV 941 (1158)
T ss_dssp EEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEEC-CCSCEEEEEEETTEEEE
T ss_pred EEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeecc-ccEEEEEEeccCCEEEE
Confidence 9999987554332222 246788888743 45 444443 5789999998665333 11111 11333333345678888
Q ss_pred EEC-CCEEEEEecCCc-eeeeeecccc--ceeEeEecCCCEEEEEEcCCeEEEEEecC
Q 003445 245 GLH-ESLKVFSWEPIR-CHDAVDVGWS--RLSDLNVHEGKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 245 gs~-d~I~Vwd~~~~~-~~~~~~~~~s--~i~~l~~~dg~lLa~~~~Dg~V~IW~ld~ 298 (819)
|.- .++.++.|+... .+..+...+. .+..+.+-+...++++..+|.+.+...+.
T Consensus 942 gD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 942 GDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECT
T ss_pred EEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCC
Confidence 754 478887776532 2223322222 23344444556788899999999887765
No 331
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.37 E-value=0.18 Score=63.46 Aligned_cols=262 Identities=11% Similarity=0.181 Sum_probs=158.0
Q ss_pred CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEE
Q 003445 38 DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFA 117 (819)
Q Consensus 38 Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~La 117 (819)
...|.|.|+.++..+..-. -.-.+.-.+|..+.|+.-. ..++.|||+++...+..+.- ...|.--.|-.. +.|+
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~-~~l~ 120 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVA 120 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCC-CeeE
Confidence 3478888887766542211 1122344577777776654 78999999998887777663 345656667643 4455
Q ss_pred EEECCCcEEEEECCC-CeEEEEEecC----CCCeEEEEEcCCCCEEEEEE-------CCCeEEEEECCCCeEEEEEecCC
Q 003445 118 SGSLDTNLKIWDIRK-KGCIHTYKGH----TRGVNAIRFTPDGRWVVSGG-------EDNTVKLWDLTAGKLLHDFKCHE 185 (819)
Q Consensus 118 sgs~Dg~I~IwDi~t-~~~i~~~~~h----~~~I~sl~fspdg~~L~sgs-------~Dg~I~IwDl~t~~~i~~~~~h~ 185 (819)
..+ +..|+.|++.. ..++..+..| ...|..-..+++.+|++..| -.|.+.+|....+ ..+.+.+|.
T Consensus 121 lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha 198 (1630)
T 1xi4_A 121 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA 198 (1630)
T ss_pred EEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhH
Confidence 544 57799999964 3444455544 45688888899999988654 2477888887643 233344554
Q ss_pred CCeEEEEEe--CC-CCEEEEEEC---CCeEEEEECCCC---eE------EEEeCC---CCCCeeEEEEeCCCCEEEE-EE
Q 003445 186 GQIQCIDFH--PH-EFLLATGSA---DRTVKFWDLETF---EL------IGSAGP---ETSGVRCLTFNPDGRTLLC-GL 246 (819)
Q Consensus 186 ~~I~sl~fs--pd-g~~Lasgs~---Dg~I~iwDl~~~---~~------l~~~~~---~~~~I~sl~fspdg~~Las-gs 246 (819)
+.-..+... +. ..+++.+.. .+.++|.++... .. +..+-+ ......++..++.-..++. ..
T Consensus 199 ~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk 278 (1630)
T 1xi4_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 278 (1630)
T ss_pred hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec
Confidence 433222221 11 123332222 368899888542 11 111111 1334456677766555554 44
Q ss_pred CCCEEEEEecCCceeeeeeccccceeEeEe--cCCCEEEEEEcCCeEEEEEecCCceeeeeecc
Q 003445 247 HESLKVFSWEPIRCHDAVDVGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGS 308 (819)
Q Consensus 247 ~d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~--~dg~lLa~~~~Dg~V~IW~ld~~~~~p~~~~~ 308 (819)
.+-+.+||++++.++..-......+..... ..+.++++. ..|.|.--.++...+.||....
T Consensus 279 ~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vn-r~G~vl~v~v~~~~iv~yi~~~ 341 (1630)
T 1xi4_A 279 YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVN-RKGQVLSVCVEEENIIPYITNV 341 (1630)
T ss_pred CceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEc-CCceEEEEEEccchhhhhHhhc
Confidence 556999999999887655555444443333 234444444 7788888888989999988654
No 332
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.28 E-value=0.12 Score=55.62 Aligned_cols=230 Identities=10% Similarity=0.075 Sum_probs=111.5
Q ss_pred CCCEEEEEEC-CCeEEEEECCC--CeEE--EEEc-CCCCCeEEEEEecCCCEEEEEEC-C---------CcEEEEECCCC
Q 003445 70 SEVLVAAGAA-SGTIKLWDLEE--AKIV--RTLT-GHRSNCISVDFHPFGEFFASGSL-D---------TNLKIWDIRKK 133 (819)
Q Consensus 70 dg~~Lasgs~-DG~I~IWDl~s--~~~i--~~l~-~h~~~I~sl~fsp~g~~Lasgs~-D---------g~I~IwDi~t~ 133 (819)
++.+++.|+. ...+.+||+.+ .+.. ..+. .......++.+ ++.+++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 5555566654 35688888864 3222 1222 11122222222 4667777765 2 46889999887
Q ss_pred eEEEEEec--CCCCeEEEEEcCCCCEEEEEECC---------------------------------------CeEEEEEC
Q 003445 134 GCIHTYKG--HTRGVNAIRFTPDGRWVVSGGED---------------------------------------NTVKLWDL 172 (819)
Q Consensus 134 ~~i~~~~~--h~~~I~sl~fspdg~~L~sgs~D---------------------------------------g~I~IwDl 172 (819)
+....-.. ....-.+++. .+++.++.|+.+ ..+.+||.
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred cEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 64432111 1111122222 467778888754 57899999
Q ss_pred CCCeEEEEEecCC-CCe-EEEEEeCCCCEEEEEEC------CCeEEEEEC--CCCeEE--EEeCCCCCCeeEEEEeCCCC
Q 003445 173 TAGKLLHDFKCHE-GQI-QCIDFHPHEFLLATGSA------DRTVKFWDL--ETFELI--GSAGPETSGVRCLTFNPDGR 240 (819)
Q Consensus 173 ~t~~~i~~~~~h~-~~I-~sl~fspdg~~Lasgs~------Dg~I~iwDl--~~~~~l--~~~~~~~~~I~sl~fspdg~ 240 (819)
.+.+-...-.... ..- .+++. -++.+++.|+. ...+.+||+ .+.+-. ..+..........+...+++
T Consensus 176 ~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 254 (357)
T 2uvk_A 176 STQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDS 254 (357)
T ss_dssp TTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTE
T ss_pred CCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCE
Confidence 8875443322111 111 22332 25667777653 345778887 443322 22211111112222233666
Q ss_pred EEEEEEC-----------------------CCEEEEEecCCceeeeeeccccce-eEeEecCCCEEEEEEcCC------e
Q 003445 241 TLLCGLH-----------------------ESLKVFSWEPIRCHDAVDVGWSRL-SDLNVHEGKLLGCSYNQS------C 290 (819)
Q Consensus 241 ~Lasgs~-----------------------d~I~Vwd~~~~~~~~~~~~~~s~i-~~l~~~dg~lLa~~~~Dg------~ 290 (819)
+++.|+. ..+.+||.++.+-..+-....... ......++++++.|+.++ .
T Consensus 255 iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~ 334 (357)
T 2uvk_A 255 LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTD 334 (357)
T ss_dssp EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEE
T ss_pred EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeee
Confidence 6666642 136678777654333322221111 223346788888887542 3
Q ss_pred EEEEEecCCceee
Q 003445 291 VGVWVVDISRIEP 303 (819)
Q Consensus 291 V~IW~ld~~~~~p 303 (819)
|.+++++.++...
T Consensus 335 v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 335 SVLITVKDNKVTV 347 (357)
T ss_dssp EEEEEC-CCSCEE
T ss_pred EEEEEEcCcEeEe
Confidence 4445676666553
No 333
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.18 E-value=0.67 Score=52.92 Aligned_cols=253 Identities=11% Similarity=0.124 Sum_probs=152.9
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCC-------------------------CCCeE--EEEEc---CCCCEEEEEE-C
Q 003445 31 VLVTGGEDHKVNLWAIGKPNAILSLSGH-------------------------TSGID--SVSFD---SSEVLVAAGA-A 79 (819)
Q Consensus 31 ~Latgs~Dg~V~IWdl~~~~~i~~l~~h-------------------------~~~V~--~l~fs---pdg~~Lasgs-~ 79 (819)
.|.+|+..|.|+|+-+.+++.++.+.-. .+... .+.+. -||++|+.-. .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 4788899999999999999988876421 11111 23332 2677887766 4
Q ss_pred CCeEEEEECCCCeEEEEEc-CCCCCeEEEEEe--cCCCEEEEEEC-------CCcEE------------EEECCCCeEEE
Q 003445 80 SGTIKLWDLEEAKIVRTLT-GHRSNCISVDFH--PFGEFFASGSL-------DTNLK------------IWDIRKKGCIH 137 (819)
Q Consensus 80 DG~I~IWDl~s~~~i~~l~-~h~~~I~sl~fs--p~g~~Lasgs~-------Dg~I~------------IwDi~t~~~i~ 137 (819)
+..|...+++..++-+.+. .....+..+.|. |+..|++.++. ||... ..|..+.+..+
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence 6788899998887765554 345678888886 67788888875 33211 12333333322
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEECC---------------CeEEEEEC-------------------------CC---
Q 003445 138 TYKGHTRGVNAIRFTPDGRWVVSGGED---------------NTVKLWDL-------------------------TA--- 174 (819)
Q Consensus 138 ~~~~h~~~I~sl~fspdg~~L~sgs~D---------------g~I~IwDl-------------------------~t--- 174 (819)
.+.- .+....+...++|.|.++.+.+ ..+.++|+ +.
T Consensus 232 Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~ 310 (638)
T 3sbq_A 232 QVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDG 310 (638)
T ss_dssp EEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTT
T ss_pred EEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccc
Confidence 2211 1223344556778887776653 13445543 22
Q ss_pred -Ce-EEEEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCC------e-------EEEEeCCCCCCeeEEEEeCC
Q 003445 175 -GK-LLHDFKCHEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLETF------E-------LIGSAGPETSGVRCLTFNPD 238 (819)
Q Consensus 175 -~~-~i~~~~~h~~~I~sl~fspdg~~Lasgs-~Dg~I~iwDl~~~------~-------~l~~~~~~~~~I~sl~fspd 238 (819)
+. ....+.. ......+.++|||+++++++ .+.++.++|++.. + ...... -.-.....+|.++
T Consensus 311 ~~~~~~~~iP~-pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~ 388 (638)
T 3sbq_A 311 KDSKFTRYVPV-PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGR 388 (638)
T ss_dssp BCCSSEEEEEE-SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSS
T ss_pred cCCceEEEEeC-CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCC
Confidence 11 1111111 12235678899999888776 4779999999842 1 122222 3456789999999
Q ss_pred CCEEEEEECC-CEEEEEecCC----------ceeeeeeccccceeEeE------ecCCCEEEEEE
Q 003445 239 GRTLLCGLHE-SLKVFSWEPI----------RCHDAVDVGWSRLSDLN------VHEGKLLGCSY 286 (819)
Q Consensus 239 g~~Lasgs~d-~I~Vwd~~~~----------~~~~~~~~~~s~i~~l~------~~dg~lLa~~~ 286 (819)
|....+-.-+ .+..|+++.. ...+.+++++.+-.... -++|++|++..
T Consensus 389 G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 389 GNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp SEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred CceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 9433333344 5889998753 34556677776554443 26788888763
No 334
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.11 E-value=0.26 Score=54.57 Aligned_cols=142 Identities=13% Similarity=0.190 Sum_probs=95.6
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeEEEEEcCC----CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe---------
Q 003445 68 DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGH----RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG--------- 134 (819)
Q Consensus 68 spdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h----~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~--------- 134 (819)
+.++.-++.+ .++.|+.-++..+...+.+... -..|..+..+|+|++||..+ +..|.|..+..+.
T Consensus 29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 3455555443 3577877787644333444322 23578899999999999986 4678888886221
Q ss_pred ---EEEEEec------CCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCCC--eEEEEEe---------cCCCCeEEE
Q 003445 135 ---CIHTYKG------HTRGVNAIRFTP---DGRWVVSGGEDNTVKLWDLTAG--KLLHDFK---------CHEGQIQCI 191 (819)
Q Consensus 135 ---~i~~~~~------h~~~I~sl~fsp---dg~~L~sgs~Dg~I~IwDl~t~--~~i~~~~---------~h~~~I~sl 191 (819)
..+.+.- ...+|..+.|+| .+..|++-..|+.|++||+... ++. .++ .....|.++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence 1233332 246799999999 4568999999999999999852 122 222 123568899
Q ss_pred EEeCCCCEEEEEE--CCCeEEEE
Q 003445 192 DFHPHEFLLATGS--ADRTVKFW 212 (819)
Q Consensus 192 ~fspdg~~Lasgs--~Dg~I~iw 212 (819)
+|..++-.|+..+ .+|.|+-.
T Consensus 186 ~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EECTTSSCEEEEECTTSCEEEEE
T ss_pred EEcCCCcEEEEEecCCCCCEEEE
Confidence 9999887777755 77877654
No 335
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.031 Score=60.55 Aligned_cols=189 Identities=11% Similarity=-0.000 Sum_probs=111.7
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCC-CCCeEEEEE--cC-CCCEEEEE-ECCCeEEEEECCCCeEEEEEcC----C
Q 003445 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGH-TSGIDSVSF--DS-SEVLVAAG-AASGTIKLWDLEEAKIVRTLTG----H 100 (819)
Q Consensus 30 ~~Latgs~Dg~V~IWdl~~~~~i~~l~~h-~~~V~~l~f--sp-dg~~Lasg-s~DG~I~IWDl~s~~~i~~l~~----h 100 (819)
.+++.++.||.|+-+|..+|+....+... ..++....- .+ ++..++.. +.||.|..++..+|.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46889999999999999999999998753 122222110 01 22333333 5799999999998865544331 1
Q ss_pred CCCeEE----EEE----ecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCC--C-----eEEEEEc-----CCCCEEEE
Q 003445 101 RSNCIS----VDF----HPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTR--G-----VNAIRFT-----PDGRWVVS 160 (819)
Q Consensus 101 ~~~I~s----l~f----sp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~--~-----I~sl~fs-----pdg~~L~s 160 (819)
..++.. +.. ...+..+++|+.+|.++..|+++|+.+..+..... . ..|.... ..+..++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 122221 000 01456789999999999999999999999864211 0 1112111 12456777
Q ss_pred EECCCeEEEEECCCCeEEEEEe-----cCCCC--e-EEEEEeCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003445 161 GGEDNTVKLWDLTAGKLLHDFK-----CHEGQ--I-QCIDFHPHEFLLATGSADRTVKFWDLETFELIG 221 (819)
Q Consensus 161 gs~Dg~I~IwDl~t~~~i~~~~-----~h~~~--I-~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~ 221 (819)
+..+..+.+.+ ++|+ +..++ ..... + .+-.++.++.+ +.++.||.|.-+|..+|..+.
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77777777777 4453 22111 10000 0 00001123555 557889999999999998875
No 336
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.96 E-value=0.53 Score=52.13 Aligned_cols=140 Identities=15% Similarity=0.123 Sum_probs=92.1
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEecCC----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----------
Q 003445 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGH----TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK----------- 92 (819)
Q Consensus 28 ~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h----~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~----------- 92 (819)
++.-++.+- ++.|+.-++......+.+... -..|..+..+|+|.+||..+ +..|.|..+..+.
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 344444443 367887787754455554432 23688899999999999875 6689999887321
Q ss_pred -EEEEEcC------CCCCeEEEEEecCC---CEEEEEECCCcEEEEECCCC--eEEEEEe---------cCCCCeEEEEE
Q 003445 93 -IVRTLTG------HRSNCISVDFHPFG---EFFASGSLDTNLKIWDIRKK--GCIHTYK---------GHTRGVNAIRF 151 (819)
Q Consensus 93 -~i~~l~~------h~~~I~sl~fsp~g---~~Lasgs~Dg~I~IwDi~t~--~~i~~~~---------~h~~~I~sl~f 151 (819)
..+.+.- ...+|..+.|||-+ ..|++-..|+.|++||+... ++. .++ .....|.+++|
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence 1233332 25679999999954 57999999999999999852 222 332 12246788888
Q ss_pred cCCCCEEEEEE--CCCeEEEE
Q 003445 152 TPDGRWVVSGG--EDNTVKLW 170 (819)
Q Consensus 152 spdg~~L~sgs--~Dg~I~Iw 170 (819)
..++-.|+..+ .+|.|+-.
T Consensus 188 g~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 188 SKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CTTSSCEEEEECTTSCEEEEE
T ss_pred cCCCcEEEEEecCCCCCEEEE
Confidence 88766566544 55665543
No 337
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.80 E-value=0.68 Score=52.84 Aligned_cols=226 Identities=11% Similarity=0.164 Sum_probs=140.7
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEcCCC-------------------------CC--eEEEEEe---cCCCEEEEEE-C
Q 003445 73 LVAAGAASGTIKLWDLEEAKIVRTLTGHR-------------------------SN--CISVDFH---PFGEFFASGS-L 121 (819)
Q Consensus 73 ~Lasgs~DG~I~IWDl~s~~~i~~l~~h~-------------------------~~--I~sl~fs---p~g~~Lasgs-~ 121 (819)
.|.+|+..|.|+|+-+.+++.+..+.... +. -..+.+. -||++|+.-. .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 47789999999999999999888764111 00 1123332 2567777776 4
Q ss_pred CCcEEEEECCCCeEEEEEec-CCCCeEEEEEc--CCCCEEEEEEC-------CCeE------------EEEECCCCeEEE
Q 003445 122 DTNLKIWDIRKKGCIHTYKG-HTRGVNAIRFT--PDGRWVVSGGE-------DNTV------------KLWDLTAGKLLH 179 (819)
Q Consensus 122 Dg~I~IwDi~t~~~i~~~~~-h~~~I~sl~fs--pdg~~L~sgs~-------Dg~I------------~IwDl~t~~~i~ 179 (819)
+..|-..+++..++-..+.- ....+..++|. |+..|+++++. ||.. ...|..+.+...
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence 67788899999888766653 34668888886 68888888875 2331 112223333322
Q ss_pred EEecCCCCeEEEEEeCCCCEEEEEECCC---------------eEEEEECC--------------C--CeEEEEeCC---
Q 003445 180 DFKCHEGQIQCIDFHPHEFLLATGSADR---------------TVKFWDLE--------------T--FELIGSAGP--- 225 (819)
Q Consensus 180 ~~~~h~~~I~sl~fspdg~~Lasgs~Dg---------------~I~iwDl~--------------~--~~~l~~~~~--- 225 (819)
++.. .+....+...++|.|.++.+.+. .+.++++. + +-.+.....
T Consensus 232 Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~ 310 (638)
T 3sbq_A 232 QVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDG 310 (638)
T ss_dssp EEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTT
T ss_pred EEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccc
Confidence 2221 22333455567788888776442 25566542 1 111111111
Q ss_pred ----------CCCCeeEEEEeCCCCEEEEEECC--CEEEEEecCCce-------------eeeeeccccceeEeEecCCC
Q 003445 226 ----------ETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRC-------------HDAVDVGWSRLSDLNVHEGK 280 (819)
Q Consensus 226 ----------~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~-------------~~~~~~~~s~i~~l~~~dg~ 280 (819)
-......+.++|||+++++++.- .+.|++++.... ...+..+..++...+-.+|.
T Consensus 311 ~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~ 390 (638)
T 3sbq_A 311 KDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGN 390 (638)
T ss_dssp BCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSE
T ss_pred cCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCc
Confidence 11234567899999999988654 699999985221 23345667777666667786
Q ss_pred EEEEEEcCCeEEEEEecCC
Q 003445 281 LLGCSYNQSCVGVWVVDIS 299 (819)
Q Consensus 281 lLa~~~~Dg~V~IW~ld~~ 299 (819)
...+-+-|..|--|+++..
T Consensus 391 aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 391 AYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EEEEETTTTEEEEEEHHHH
T ss_pred eEeeeeecceEEEEeccHH
Confidence 6667779999999999853
No 338
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.77 E-value=0.24 Score=58.85 Aligned_cols=192 Identities=14% Similarity=0.153 Sum_probs=108.3
Q ss_pred CCcEEEEEeCC----CeEEEEECCCCceEEEe-c------CCCCCeEEEEEcC-CCCEEEEEECC------CeEEEEECC
Q 003445 28 SSRVLVTGGED----HKVNLWAIGKPNAILSL-S------GHTSGIDSVSFDS-SEVLVAAGAAS------GTIKLWDLE 89 (819)
Q Consensus 28 ~~~~Latgs~D----g~V~IWdl~~~~~i~~l-~------~h~~~V~~l~fsp-dg~~Lasgs~D------G~I~IWDl~ 89 (819)
++.+++.||.+ ..+.+||..+.+....- . .....-.+++... ++.+++.||.+ ..+.+||+.
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 56677778753 46888998777654433 1 1111112233333 77788887754 358899998
Q ss_pred CCeEEEE--EcCCCCCeEEEEEecCCCEEEEEECCC--cEEEEECCCCeEEEEEe-----cCCCCeEEEEEcCC-CCEEE
Q 003445 90 EAKIVRT--LTGHRSNCISVDFHPFGEFFASGSLDT--NLKIWDIRKKGCIHTYK-----GHTRGVNAIRFTPD-GRWVV 159 (819)
Q Consensus 90 s~~~i~~--l~~h~~~I~sl~fsp~g~~Lasgs~Dg--~I~IwDi~t~~~i~~~~-----~h~~~I~sl~fspd-g~~L~ 159 (819)
+.+.... +....... +++...++..++.|+.++ .+.+||..+......-. .......++.+..+ ++.++
T Consensus 477 t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 477 TREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 8654332 11111122 223323778888887654 69999998876443221 11122233555554 66777
Q ss_pred EEEC--C-----CeEEEEECCCCeE-----EEEEecC--CC-CeEEEEEeCCCCEEEEEEC--------CCeEEEEECCC
Q 003445 160 SGGE--D-----NTVKLWDLTAGKL-----LHDFKCH--EG-QIQCIDFHPHEFLLATGSA--------DRTVKFWDLET 216 (819)
Q Consensus 160 sgs~--D-----g~I~IwDl~t~~~-----i~~~~~h--~~-~I~sl~fspdg~~Lasgs~--------Dg~I~iwDl~~ 216 (819)
.|+. + +.+.+||+.+... ...+... .. .-.++....++.+++.|+. ...+.+||+.+
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 7765 2 4688999987761 1222111 11 1112333344777888774 34699999988
Q ss_pred CeEE
Q 003445 217 FELI 220 (819)
Q Consensus 217 ~~~l 220 (819)
.+-.
T Consensus 636 ~~W~ 639 (695)
T 2zwa_A 636 ETLT 639 (695)
T ss_dssp TEEE
T ss_pred CeEE
Confidence 7654
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.59 E-value=0.22 Score=59.29 Aligned_cols=192 Identities=14% Similarity=0.126 Sum_probs=107.1
Q ss_pred CCCCEEEEEECC----CeEEEEECCCCeEEEEE-c------CCCCCeEEEEEec-CCCEEEEEECC------CcEEEEEC
Q 003445 69 SSEVLVAAGAAS----GTIKLWDLEEAKIVRTL-T------GHRSNCISVDFHP-FGEFFASGSLD------TNLKIWDI 130 (819)
Q Consensus 69 pdg~~Lasgs~D----G~I~IWDl~s~~~i~~l-~------~h~~~I~sl~fsp-~g~~Lasgs~D------g~I~IwDi 130 (819)
-++.+++.||.+ ..+.+||..+++....- . .....-.+++... ++..++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 466777777753 46889999887654433 1 1111122333333 67777777754 35889999
Q ss_pred CCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEECCC--eEEEEECCCCeEEEEEe-----cCCCCeEEEEEeCC-CCEEE
Q 003445 131 RKKGCIHTYKG-HTRGVNAIRFTPDGRWVVSGGEDN--TVKLWDLTAGKLLHDFK-----CHEGQIQCIDFHPH-EFLLA 201 (819)
Q Consensus 131 ~t~~~i~~~~~-h~~~I~sl~fspdg~~L~sgs~Dg--~I~IwDl~t~~~i~~~~-----~h~~~I~sl~fspd-g~~La 201 (819)
.+......-.. ....-.+++...++..++.|+.++ .+.+||..+.+-...-. .......++.+..+ +.+++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 88654332111 111122333334788888888655 69999998876433211 11122233555655 67777
Q ss_pred EEEC--C-----CeEEEEECCCCe--------EEEEeC-CCCCCeeEEEEeCCCCEEEEEEC---------CCEEEEEec
Q 003445 202 TGSA--D-----RTVKFWDLETFE--------LIGSAG-PETSGVRCLTFNPDGRTLLCGLH---------ESLKVFSWE 256 (819)
Q Consensus 202 sgs~--D-----g~I~iwDl~~~~--------~l~~~~-~~~~~I~sl~fspdg~~Lasgs~---------d~I~Vwd~~ 256 (819)
.|+. + ..+.+||+.+.+ .+.... ...... +++...++++++.|+. +.+.+||..
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 7765 2 468999998765 222211 111122 3333333677776652 348888877
Q ss_pred CCcee
Q 003445 257 PIRCH 261 (819)
Q Consensus 257 ~~~~~ 261 (819)
+.+-.
T Consensus 635 t~~W~ 639 (695)
T 2zwa_A 635 SETLT 639 (695)
T ss_dssp TTEEE
T ss_pred CCeEE
Confidence 66543
No 340
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.31 E-value=4 Score=44.06 Aligned_cols=229 Identities=11% Similarity=0.111 Sum_probs=120.4
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE--EEE----cCCCCCeEEEEEecC---CCEEEEE-E--CC
Q 003445 55 LSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIV--RTL----TGHRSNCISVDFHPF---GEFFASG-S--LD 122 (819)
Q Consensus 55 l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i--~~l----~~h~~~I~sl~fsp~---g~~Lasg-s--~D 122 (819)
+...-...+.|+|.|+++++++--..|.|++++...++.. ..+ .........|+|+|+ +..|.+. + .+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 3333456789999999998777544899999987665542 222 123456789999995 3344332 2 34
Q ss_pred CcEEEEECCC----------CeEEE-EEec-CCCCeEEEEEcCCCCEEEEEEC-------------CCeEEEEECCCC--
Q 003445 123 TNLKIWDIRK----------KGCIH-TYKG-HTRGVNAIRFTPDGRWVVSGGE-------------DNTVKLWDLTAG-- 175 (819)
Q Consensus 123 g~I~IwDi~t----------~~~i~-~~~~-h~~~I~sl~fspdg~~L~sgs~-------------Dg~I~IwDl~t~-- 175 (819)
+.|.-|.+.. .+.+. .+.. .......|.|.|||.+.++.+. .|.|.-++....
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 5666666554 12222 2221 1123467999999987776543 355555555422
Q ss_pred -------eEEEEEecCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCe------------------EEEEeCCCCCC
Q 003445 176 -------KLLHDFKCHEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLETFE------------------LIGSAGPETSG 229 (819)
Q Consensus 176 -------~~i~~~~~h~~~I~sl~fspdg~~Lasgs-~Dg~I~iwDl~~~~------------------~l~~~~~~~~~ 229 (819)
..+.. .+|. ....++|+|+|.+.++=. .|+.=.|.-+..+. ++..+..+...
T Consensus 187 ~~nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~a 264 (347)
T 3das_A 187 PGNPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEAS 264 (347)
T ss_dssp TTCSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCC
T ss_pred CCCCCCCCeEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCC
Confidence 11111 1332 346889999876655432 22212222222211 12222222234
Q ss_pred eeEEEEeCCCCEEEEEECC-CEEEEEecCCce----eeeeeccccceeEeEe-cCCCEEEEEE
Q 003445 230 VRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRC----HDAVDVGWSRLSDLNV-HEGKLLGCSY 286 (819)
Q Consensus 230 I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~----~~~~~~~~s~i~~l~~-~dg~lLa~~~ 286 (819)
...++|. +|..+.....+ .|..+.++.... ...+...+..+.++.. +||.++++..
T Consensus 265 p~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 265 PSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 5677777 45554444333 455555554322 2223334555555554 5665555443
No 341
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.21 E-value=3.8 Score=43.22 Aligned_cols=216 Identities=9% Similarity=0.015 Sum_probs=118.7
Q ss_pred CCCCEEEEEE--CCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECC--------------CcEEEEECCC
Q 003445 69 SSEVLVAAGA--ASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD--------------TNLKIWDIRK 132 (819)
Q Consensus 69 pdg~~Lasgs--~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~D--------------g~I~IwDi~t 132 (819)
.++..|+... .++.|...+.+.... ..+... .+--+++++.+|+.+... ..|+..++..
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~-~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNI-HKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSC-EEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCC-EEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 3555555543 246666666544332 222211 123457888887776542 4677788876
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEE----CCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEEC-CC
Q 003445 133 KGCIHTYKGHTRGVNAIRFTPDGRWVVSGG----EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA-DR 207 (819)
Q Consensus 133 ~~~i~~~~~h~~~I~sl~fspdg~~L~sgs----~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~-Dg 207 (819)
.+... +.. .. +..|++++++|+-.. ....|...++.... ...+..+.. ..|++++..|+-.+. ..
T Consensus 98 ~~~~~-l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 98 HGSTV-LDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp CCCEE-EEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred CcceE-eec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence 65332 221 11 236777899988776 34467777776443 333333322 456778888886665 57
Q ss_pred eEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEE--EecCCceeeeeeccccceeEeEecCCCEEEE
Q 003445 208 TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVF--SWEPIRCHDAVDVGWSRLSDLNVHEGKLLGC 284 (819)
Q Consensus 208 ~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vw--d~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~ 284 (819)
.|+..++..+.....+. +.. ...++|++.+|+....+ .-+|+ +++......... ..+..+. +++..|..
T Consensus 168 ~Iy~~~l~g~~~~~l~~---~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~---~~~~~~~-~~g~~Iy~ 239 (302)
T 3s25_A 168 QLYRYDTASQSEALFYD---CNC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTE---ANIEHYN-VYGSLIFY 239 (302)
T ss_dssp CEEEEETTTTEEEEEEC---SCE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSC---SCEEEEE-EETTEEEE
T ss_pred eEEEEECCCCCEEEEeC---CCc-cceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeC---CCcceEE-ECCCEEEE
Confidence 88888988766443333 222 23467999999876543 23444 444333222221 1122233 45555554
Q ss_pred EE--cCCeEEEEEecCCceeeeeec
Q 003445 285 SY--NQSCVGVWVVDISRIEPYTIG 307 (819)
Q Consensus 285 ~~--~Dg~V~IW~ld~~~~~p~~~~ 307 (819)
+. ..+.|..-+++....+.+..+
T Consensus 240 ~~~~~~~~i~~~~~DG~~r~~l~~~ 264 (302)
T 3s25_A 240 QRGGDNPALCVVKNDGTGFKELAKG 264 (302)
T ss_dssp EECSSSCEEEEEETTSCCCEEEEES
T ss_pred EECCCCcEEEEEECCCCccEEeeCC
Confidence 32 235677777777666555443
No 342
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.87 E-value=5.1 Score=43.00 Aligned_cols=140 Identities=11% Similarity=0.103 Sum_probs=78.0
Q ss_pred CeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEc-------CCCCCeEEEEEecC---CCEEEEE-EC-------
Q 003445 61 GIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVRTLT-------GHRSNCISVDFHPF---GEFFASG-SL------- 121 (819)
Q Consensus 61 ~V~~l~fspdg~-~Lasgs~DG~I~IWDl~s~~~i~~l~-------~h~~~I~sl~fsp~---g~~Lasg-s~------- 121 (819)
....|+|.|+++ ++ ++...|.|++++.. ++....+. ........|+|+|+ +..|.+. +.
T Consensus 19 ~P~~i~~~pdG~~l~-V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLPDNHGML-ITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECSTTCCEE-EEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CcEEEEEcCCCCEEE-EEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 568999999999 55 45678999999853 43221111 12345689999996 4444433 22
Q ss_pred CCcEEEEECCCC--e--EEEE-Eec------CCCCeEEEEEcCCCCEEEEEEC-------------CCeEEEEECCCCe-
Q 003445 122 DTNLKIWDIRKK--G--CIHT-YKG------HTRGVNAIRFTPDGRWVVSGGE-------------DNTVKLWDLTAGK- 176 (819)
Q Consensus 122 Dg~I~IwDi~t~--~--~i~~-~~~------h~~~I~sl~fspdg~~L~sgs~-------------Dg~I~IwDl~t~~- 176 (819)
...|..|++... . .... +.. ....-..|+|.|||.++++.+. .|.|.-+|....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235666766532 1 1111 111 1112357999999965555433 2467777765320
Q ss_pred -----------EEEEEecCCCCeEEEEEeC-CCCEEEE
Q 003445 177 -----------LLHDFKCHEGQIQCIDFHP-HEFLLAT 202 (819)
Q Consensus 177 -----------~i~~~~~h~~~I~sl~fsp-dg~~Las 202 (819)
....+.........++|+| ++.++++
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE
Confidence 1111111123367899999 5554444
No 343
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.51 E-value=0.33 Score=52.47 Aligned_cols=114 Identities=12% Similarity=0.096 Sum_probs=76.8
Q ss_pred CCEEEEEECCCcEEEEECCCCeEEEEEecC-CCCeEEEEEc--CCCCEEEEE--ECCCeEEEEECCCCeEEEEEec----
Q 003445 113 GEFFASGSLDTNLKIWDIRKKGCIHTYKGH-TRGVNAIRFT--PDGRWVVSG--GEDNTVKLWDLTAGKLLHDFKC---- 183 (819)
Q Consensus 113 g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h-~~~I~sl~fs--pdg~~L~sg--s~Dg~I~IwDl~t~~~i~~~~~---- 183 (819)
+..+++++.||.|+-+|..+|+.+.+++.. ..++....-. +.+..++.+ +.||.|..+|..+|.....+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 347899999999999999999999998754 1222221100 112234444 5899999999998866555442
Q ss_pred CCCCeEE----EEEe----CCCCEEEEEECCCeEEEEECCCCeEEEEeCCC
Q 003445 184 HEGQIQC----IDFH----PHEFLLATGSADRTVKFWDLETFELIGSAGPE 226 (819)
Q Consensus 184 h~~~I~s----l~fs----pdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~ 226 (819)
...++.. +... ..+..+++|+.+|.+.-.|+.+|+.+..+...
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 2222221 0000 14568899999999999999999999988654
No 344
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.46 E-value=1.8 Score=48.61 Aligned_cols=116 Identities=8% Similarity=0.114 Sum_probs=70.1
Q ss_pred ccceEEEEeccCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce--EEEecC------CCCCeEEEEEcCC---CCE
Q 003445 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA--ILSLSG------HTSGIDSVSFDSS---EVL 73 (819)
Q Consensus 5 r~~kl~~~~~H~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~--i~~l~~------h~~~V~~l~fspd---g~~ 73 (819)
..+++..+...-...+.|+|.| +++++++-...+.|.+++..++.. +..+.. ....+..|+|+|+ +..
T Consensus 15 ~gf~~~~~a~~l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~ 93 (454)
T 1cru_A 15 ENFDKKVILSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPY 93 (454)
T ss_dssp TTSCEEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCE
T ss_pred CCeEEEEEECCCCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCE
Confidence 3466666766566788999999 566666554435788887654543 222321 2456789999995 555
Q ss_pred EEEEEC-------------CCeEEEEECCCC-------eEEE-EEcC-CCCCeEEEEEecCCCEEEEEEC
Q 003445 74 VAAGAA-------------SGTIKLWDLEEA-------KIVR-TLTG-HRSNCISVDFHPFGEFFASGSL 121 (819)
Q Consensus 74 Lasgs~-------------DG~I~IWDl~s~-------~~i~-~l~~-h~~~I~sl~fsp~g~~Lasgs~ 121 (819)
|+.... ...|..|++..+ +.+. .+.. .......|+|.|+|.++++.+.
T Consensus 94 lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 94 IYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp EEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred EEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 544432 235666665432 1121 1221 2235789999999987776543
No 345
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.40 E-value=0.88 Score=57.48 Aligned_cols=198 Identities=10% Similarity=0.158 Sum_probs=120.2
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CeEEEEEcCC----CC
Q 003445 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE-AKIVRTLTGH----RS 102 (819)
Q Consensus 28 ~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s-~~~i~~l~~h----~~ 102 (819)
..+++|.-. ..++.|+|+++...+..+.- ...|..=.|-.+..+-++ + +..|.-|++.. ..++..+..| ..
T Consensus 76 ~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~lV-T-~~aVyHW~~~~~s~P~k~fdR~~~L~~~ 151 (1630)
T 1xi4_A 76 ASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALV-T-DNAVYHWSMEGESQPVKMFDRHSSLAGC 151 (1630)
T ss_pred CcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEEE-c-CCeEEEeccCCCCccHHHHhcchhcccC
Confidence 344555543 67899999988888777663 456777777554443333 2 56899999974 3444444444 34
Q ss_pred CeEEEEEecCCCEEEEEE-------CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC--C-CCEEEEEEC---CCeEEE
Q 003445 103 NCISVDFHPFGEFFASGS-------LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP--D-GRWVVSGGE---DNTVKL 169 (819)
Q Consensus 103 ~I~sl~fsp~g~~Lasgs-------~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fsp--d-g~~L~sgs~---Dg~I~I 169 (819)
.|..-..+++.+.++..| ..|.+.+|..+.+ .-+.+.||......+.+.. . ...++.+.. .+.++|
T Consensus 152 QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi 230 (1630)
T 1xi4_A 152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 230 (1630)
T ss_pred eeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEE
Confidence 566667777888766443 3578889988654 3445566655444443321 1 122222221 378899
Q ss_pred EECCCC---eE------EEEEec---CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCe
Q 003445 170 WDLTAG---KL------LHDFKC---HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGV 230 (819)
Q Consensus 170 wDl~t~---~~------i~~~~~---h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I 230 (819)
.++... .. +..+.. ...-..++..++.-.++..-+.-|.|++||+.++.++..-+-....|
T Consensus 231 ~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~i 303 (1630)
T 1xi4_A 231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETI 303 (1630)
T ss_pred EecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCce
Confidence 888532 11 111111 12224567777777788888889999999999998876654433333
No 346
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.37 E-value=2.1 Score=48.03 Aligned_cols=105 Identities=11% Similarity=0.169 Sum_probs=63.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE--EEEcC------CCCCeEEEEEecC---CCEEEEEEC------
Q 003445 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIV--RTLTG------HRSNCISVDFHPF---GEFFASGSL------ 121 (819)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i--~~l~~------h~~~I~sl~fsp~---g~~Lasgs~------ 121 (819)
-...+.|+|.|+|+++++-...+.|.+++..+++.. ..+.. .......|+|+|+ +..|.+...
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345689999999998776443347988887655432 22321 2456789999995 444444332
Q ss_pred -------CCcEEEEECCCC-------eEEEE-Eec-CCCCeEEEEEcCCCCEEEEEEC
Q 003445 122 -------DTNLKIWDIRKK-------GCIHT-YKG-HTRGVNAIRFTPDGRWVVSGGE 163 (819)
Q Consensus 122 -------Dg~I~IwDi~t~-------~~i~~-~~~-h~~~I~sl~fspdg~~L~sgs~ 163 (819)
...|.-|+.... +.+.. +.. .......|+|.|||.+.++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666655321 11221 221 1234689999999987776554
No 347
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.28 E-value=1.8 Score=43.77 Aligned_cols=169 Identities=12% Similarity=0.041 Sum_probs=93.4
Q ss_pred CcEEEEEeCCCeEEEEECCCCc------eEEEecCC--CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE------E
Q 003445 29 SRVLVTGGEDHKVNLWAIGKPN------AILSLSGH--TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI------V 94 (819)
Q Consensus 29 ~~~Latgs~Dg~V~IWdl~~~~------~i~~l~~h--~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~------i 94 (819)
..+|++..+| +++.=....+. ....+ ++ =..+.+++|+|++.+.++ .+|.+.-.+..+... -
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 4567777777 65554443333 11222 22 236789999999987666 688877776644111 1
Q ss_pred EEE-c-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeE-------EEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003445 95 RTL-T-GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC-------IHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (819)
Q Consensus 95 ~~l-~-~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~-------i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg 165 (819)
..+ . +-. ...++.|.|+|.+.++ .||.|+-++..+... ...-..-=..+..|.|.|+|.+.+.. |+
T Consensus 80 t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg 154 (236)
T 1tl2_A 80 KKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQ 154 (236)
T ss_dssp EEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TT
T ss_pred cEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CC
Confidence 111 0 111 1468899999988777 569998887633211 11111111457999999999866655 88
Q ss_pred eEEEEECCCCe------EEEEEe-cCCCCeEEEEEeCCCCEEEEEECCCe
Q 003445 166 TVKLWDLTAGK------LLHDFK-CHEGQIQCIDFHPHEFLLATGSADRT 208 (819)
Q Consensus 166 ~I~IwDl~t~~------~i~~~~-~h~~~I~sl~fspdg~~Lasgs~Dg~ 208 (819)
.++-+..-++. ....+- ..-..-..+.|.+++.+.++. +|.
T Consensus 155 ~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~ 202 (236)
T 1tl2_A 155 QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGK 202 (236)
T ss_dssp EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred cEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCe
Confidence 75543332211 011111 111223446677777666665 553
No 348
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.37 E-value=0.56 Score=47.40 Aligned_cols=142 Identities=13% Similarity=0.059 Sum_probs=82.0
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceE------EEec--CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI------LSLS--GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i------~~l~--~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (819)
..+.+++|+| ++.+.++ .+|.++-.+..+.... ..+- +-. ...++.|.+++.+.++ .||.|.-|+-
T Consensus 41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 3677999999 6665555 6787666555332111 1111 111 1478999999988877 5699988876
Q ss_pred CCCe-------EEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe------EEEEEe-cCCCCeEEEEEcCC
Q 003445 89 EEAK-------IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG------CIHTYK-GHTRGVNAIRFTPD 154 (819)
Q Consensus 89 ~s~~-------~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~------~i~~~~-~h~~~I~sl~fspd 154 (819)
.+.. -...-.+--..+..|.|.|+|.+.++. |+.++-+...++. ....+. ..-....-+.|.++
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~ 192 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV 192 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCC
Confidence 3311 011112122467899999999888777 7776544332211 011111 22223445668888
Q ss_pred CCEEEEEECCCeEE
Q 003445 155 GRWVVSGGEDNTVK 168 (819)
Q Consensus 155 g~~L~sgs~Dg~I~ 168 (819)
|...++. +|.+.
T Consensus 193 G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 193 GTLFGVQ--GGKFY 204 (236)
T ss_dssp SCEEEEE--TTEEE
T ss_pred CcEEEEe--CCeEE
Confidence 8766555 66443
No 349
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.23 E-value=1.6 Score=45.57 Aligned_cols=221 Identities=15% Similarity=0.084 Sum_probs=109.9
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 003445 61 GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK 140 (819)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~ 140 (819)
.|..++..... .++. . ||.|..|-....-.+..-......|..++...+. .++. . ||.|+.|-......+-.-.
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 56777764432 2223 5 8999999765321111111122356666665322 2333 5 8999999765322111111
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEE
Q 003445 141 GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI 220 (819)
Q Consensus 141 ~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l 220 (819)
.-...|..++...+ +.+.-. +|.|+.|-....-.+-.-......|..++...+. .++ -. ||.|+.|-......+
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n~~gql 172 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT-ALA-VK-NGGVIAWGDNYFGQT 172 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEE-EE-TTEEEEEECCTTSTT
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE-EEE-EE-CCEEEEecCCCCCCC
Confidence 11245777776533 444445 9999999765321111011123456666654332 222 33 789999976542222
Q ss_pred EEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeeeeeccccceeEeEecCCCEEEEEEcCCeEEEEEec
Q 003445 221 GSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 221 ~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~s~i~~l~~~dg~lLa~~~~Dg~V~IW~ld 297 (819)
..-......|..++...+. .++. .++.+..|-....-....-......+..+.......++.. |+.|..|--.
T Consensus 173 g~p~~~~~~v~~i~~G~~h-s~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~--~g~v~~wG~n 245 (282)
T 3qhy_B 173 TVPAEAQSGVDDVAGGIFH-SLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK--NGKVIAWGSS 245 (282)
T ss_dssp SCCGGGGSSEEEEEECSSE-EEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE--TTEEEEESTT
T ss_pred CCceecCCCeEEEEecCCE-EEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE--CCEEEEecCC
Confidence 1111112456666654332 3334 5555666655433222211122344555555555666655 8999999544
No 350
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.11 E-value=15 Score=39.56 Aligned_cols=183 Identities=7% Similarity=-0.083 Sum_probs=91.3
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCC----eEEEEECCCCceEEEecC--------------CCCCeEEEEEcCC--CCEEE
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDH----KVNLWAIGKPNAILSLSG--------------HTSGIDSVSFDSS--EVLVA 75 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg----~V~IWdl~~~~~i~~l~~--------------h~~~V~~l~fspd--g~~La 75 (819)
...|.+|++.|.+...|++++..| .|...+ ..++.-..+.. +...|.++++.|. ...|+
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 457999999984444455555555 444432 22332222211 1124778999862 45556
Q ss_pred EEECCCeEEEEECCCCeEEEEEcC-------------------CCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCeE
Q 003445 76 AGAASGTIKLWDLEEAKIVRTLTG-------------------HRSNCISVDFHPF-GEFFASGSLDTNLKIWDIRKKGC 135 (819)
Q Consensus 76 sgs~DG~I~IWDl~s~~~i~~l~~-------------------h~~~I~sl~fsp~-g~~Lasgs~Dg~I~IwDi~t~~~ 135 (819)
+++..+.|...+- .++....+.. ....+.+|.+.|. ...++.+..++.|+..+ ..++.
T Consensus 133 ~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTD 210 (394)
T ss_dssp EEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSS
T ss_pred EEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCC
Confidence 6665666655532 2222222211 1235788999874 34455554445455443 22222
Q ss_pred EEEEec-----C--------CCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEec--CC---CCeEEEEEeCC
Q 003445 136 IHTYKG-----H--------TRGVNAIRFTPD-GRWVVSGGEDNTVKLWDLTAGKLLHDFKC--HE---GQIQCIDFHPH 196 (819)
Q Consensus 136 i~~~~~-----h--------~~~I~sl~fspd-g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~--h~---~~I~sl~fspd 196 (819)
-..+.. + ...+.++.+.|. ...|+.+...+ |...+- .++....+.. .. ..+.++.++|.
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~ 288 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQR 288 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEECCC
Confidence 222211 0 124889999985 45677776544 444442 2333333321 11 23567888763
Q ss_pred -CCEEEEE
Q 003445 197 -EFLLATG 203 (819)
Q Consensus 197 -g~~Lasg 203 (819)
...|+++
T Consensus 289 ~~~~l~~~ 296 (394)
T 3b7f_A 289 DPRTVWVF 296 (394)
T ss_dssp CTTCEEEE
T ss_pred CCCEEEEE
Confidence 3444444
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=90.72 E-value=24 Score=39.37 Aligned_cols=246 Identities=11% Similarity=0.094 Sum_probs=130.1
Q ss_pred ceEEEEeccCCCEEEEEEeeCCC-cEEEEEeCCCeEEEEECCCC---ceEEEec---------CCCCCeEEEEEcCC---
Q 003445 7 YKLQEFVAHSSTVNCLKIGRKSS-RVLVTGGEDHKVNLWAIGKP---NAILSLS---------GHTSGIDSVSFDSS--- 70 (819)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~-~~Latgs~Dg~V~IWdl~~~---~~i~~l~---------~h~~~V~~l~fspd--- 70 (819)
+++..+..--..-+.|+|.|++. ++|+ +...|.|++++.... ..+..+. ........|+|+|+
T Consensus 4 f~v~~va~gL~~P~~~a~~pdG~~rl~V-~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~ 82 (463)
T 2wg3_C 4 FCIQEVVSGLRQPVGALHSGDGSQRLFI-LEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKK 82 (463)
T ss_dssp EEEEEEEEEESSEEEEECCSSSSCCEEE-EETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHH
T ss_pred eEEEEeccCCCCceEEEECCCCCeEEEE-EeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcC
Confidence 45555555556788999999654 4554 567899999975322 1223222 11457889999996
Q ss_pred -CCEEEEEEC--C----------CeEEEEECCC----------CeEEEEEc--CCCCCeEEEEEecCCCEEEEEECCC--
Q 003445 71 -EVLVAAGAA--S----------GTIKLWDLEE----------AKIVRTLT--GHRSNCISVDFHPFGEFFASGSLDT-- 123 (819)
Q Consensus 71 -g~~Lasgs~--D----------G~I~IWDl~s----------~~~i~~l~--~h~~~I~sl~fsp~g~~Lasgs~Dg-- 123 (819)
+.+.++-+. + ..|.-|.+.. .+.+..+. ........|.|.|||.++++.+..+
T Consensus 83 n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~ 162 (463)
T 2wg3_C 83 NGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMIT 162 (463)
T ss_dssp HCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCC
T ss_pred CCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCC
Confidence 433333222 1 1455566642 23333332 2234568899999998777665433
Q ss_pred ---------------cEEEEECCCC---------------------eEEEEEecCCCCeEEEEEcCC-----CC-EEEEE
Q 003445 124 ---------------NLKIWDIRKK---------------------GCIHTYKGHTRGVNAIRFTPD-----GR-WVVSG 161 (819)
Q Consensus 124 ---------------~I~IwDi~t~---------------------~~i~~~~~h~~~I~sl~fspd-----g~-~L~sg 161 (819)
.|.-.|.... ..+..+ +|.. ...++|.|. |+ +++.+
T Consensus 163 ~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~-G~RN-p~gla~dp~tg~~~G~l~~~~~ 240 (463)
T 2wg3_C 163 LDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAH-GLHD-PGRCAVDRHPTDININLTILCS 240 (463)
T ss_dssp HHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEE-CCSS-CCBEEEESSCSSTTCSEEEEEE
T ss_pred CCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEE-CCCC-cceEEECCCCCCcccceEEEec
Confidence 2333344331 012222 3444 457899986 34 45544
Q ss_pred ECCC----eEEEEECCCC------eEEEEEecCC-CCeEEEEEeCC-------CCEEEEEECCCeEEEEECCCCe---EE
Q 003445 162 GEDN----TVKLWDLTAG------KLLHDFKCHE-GQIQCIDFHPH-------EFLLATGSADRTVKFWDLETFE---LI 220 (819)
Q Consensus 162 s~Dg----~I~IwDl~t~------~~i~~~~~h~-~~I~sl~fspd-------g~~Lasgs~Dg~I~iwDl~~~~---~l 220 (819)
...| .-.|..+..+ ..+..+..|. ..+..+.|-.. +.+|+ +...+.|....++... ..
T Consensus 241 D~~G~~~~~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~-~~~~g~i~~~~~~~~~~~~~~ 319 (463)
T 2wg3_C 241 DSNGKNRSSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVF-GDRNGNFLTLQQSPVTKQWQE 319 (463)
T ss_dssp CC------CEEEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEE-EETTSCEEEEEC-----CCEE
T ss_pred ccCCCCCCCCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEE-ecCCCcEEEEEeCCCCceeeE
Confidence 3212 1233333222 1333443221 46777877532 33444 4445777666664331 11
Q ss_pred EEe---------CCCCCCeeEEEEeCCCCEEEEEEC------CCEEEEEec
Q 003445 221 GSA---------GPETSGVRCLTFNPDGRTLLCGLH------ESLKVFSWE 256 (819)
Q Consensus 221 ~~~---------~~~~~~I~sl~fspdg~~Lasgs~------d~I~Vwd~~ 256 (819)
..+ ......+..+.+.|||.++++... ..-+||.+.
T Consensus 320 ~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~ 370 (463)
T 2wg3_C 320 KPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIV 370 (463)
T ss_dssp EEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred EEeecCCcccccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEec
Confidence 111 112356899999999998887753 345788765
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=89.67 E-value=5.4 Score=41.49 Aligned_cols=222 Identities=14% Similarity=0.089 Sum_probs=110.2
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003445 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL 97 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l 97 (819)
.|..++... ...++. . ||.|+.|-....-.+-.-......|..++......++ . . ||.|..|-....-.+..-
T Consensus 25 ~i~~ia~G~--~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~-l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 25 GVDAIAGGY--FHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLA-L-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SCCEEEECS--SEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEE-E-E-TTEEEEEECCTTSTTCCC
T ss_pred CCcEEEeCC--CeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEE-E-E-CCEEEEeeCCCCCCCCCC
Confidence 577777653 233443 4 8999999764322111111122357777765443333 3 4 899999976532111110
Q ss_pred cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003445 98 TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL 177 (819)
Q Consensus 98 ~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~ 177 (819)
..-...|..++... .+.+.-. ||.|+.|-......+-.-......|..++...+ +.+.-. ||.|+.|-......
T Consensus 98 ~~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gq 171 (282)
T 3qhy_B 98 AEARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQ 171 (282)
T ss_dssp GGGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTST
T ss_pred cccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCC
Confidence 11124677777653 3444445 899999976542211111112345666665533 233333 79999997653211
Q ss_pred EEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecC
Q 003445 178 LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEP 257 (819)
Q Consensus 178 i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~ 257 (819)
+..-......|..++.-.+. .++. .||.|+.|=......+..-......|..++.... ..++.. ++.+..|-...
T Consensus 172 lg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~-h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 172 TTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW-YSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp TSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS-CEEEEE-TTEEEEESTTC
T ss_pred CCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCC-EEEEEE-CCEEEEecCCC
Confidence 11000112456777654433 3333 4899999976543222111111234666665443 344444 55555554433
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=88.71 E-value=30 Score=37.58 Aligned_cols=181 Identities=8% Similarity=0.098 Sum_probs=107.1
Q ss_pred eEEEEECCCC--ceEEEecC------CCCCeEEEEEc---CC----CCEEEEEE-CCCeEEEEECCCCeEEEEEcCCCCC
Q 003445 40 KVNLWAIGKP--NAILSLSG------HTSGIDSVSFD---SS----EVLVAAGA-ASGTIKLWDLEEAKIVRTLTGHRSN 103 (819)
Q Consensus 40 ~V~IWdl~~~--~~i~~l~~------h~~~V~~l~fs---pd----g~~Lasgs-~DG~I~IWDl~s~~~i~~l~~h~~~ 103 (819)
+|.+||+.+. +.++.+.- ....+..+.+. ++ +.+++... ..+-|.++|+.+++..+.+.. .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~--~- 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHP--T- 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECG--G-
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccC--C-
Confidence 6889999999 88887653 23468888887 22 34544444 467899999999998877632 1
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC----CCEEEEEECCCe-EEEEE---CCCC
Q 003445 104 CISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD----GRWVVSGGEDNT-VKLWD---LTAG 175 (819)
Q Consensus 104 I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~h~~~I~sl~fspd----g~~L~sgs~Dg~-I~IwD---l~t~ 175 (819)
|.|+....++ .+|.-. .+ ...+..|+++|+ +++|+-....+. ++-.. ++..
T Consensus 201 -----~~pd~~~~~~--i~G~~~-----------~~---~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~ 259 (381)
T 3q6k_A 201 -----FKAERPTKFD--YGGKEY-----------EF---KAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQK 259 (381)
T ss_dssp -----GSCCSCEEEE--ETTEEE-----------EE---CCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSST
T ss_pred -----CccccCcceE--ECCEEe-----------Ee---ccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCc
Confidence 3444111111 122211 11 345889999997 778877765553 33222 1211
Q ss_pred ---eEEEEEecC--CCCeEEEEEe-CCCCEEEEEECCCeEEEEECCC-----C--eEEEEeCCCCCCeeEEEEeCCCCEE
Q 003445 176 ---KLLHDFKCH--EGQIQCIDFH-PHEFLLATGSADRTVKFWDLET-----F--ELIGSAGPETSGVRCLTFNPDGRTL 242 (819)
Q Consensus 176 ---~~i~~~~~h--~~~I~sl~fs-pdg~~Lasgs~Dg~I~iwDl~~-----~--~~l~~~~~~~~~I~sl~fspdg~~L 242 (819)
..+..+-.. .+.-..+++. .+|.++++--....|..|+..+ . ..+.. ...-..+..+.+..+|.+.
T Consensus 260 ~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~-d~~l~~pd~~~i~~~g~Lw 338 (381)
T 3q6k_A 260 GGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYT-SSRFVFGTDISVDSKGGLW 338 (381)
T ss_dssp TCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEE-CTTCCSEEEEEECTTSCEE
T ss_pred chhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEE-CCCccccCeEEECCCCeEE
Confidence 122222111 2334456776 5787777777888999999875 1 22222 2244567788887777655
Q ss_pred EEE
Q 003445 243 LCG 245 (819)
Q Consensus 243 asg 245 (819)
+..
T Consensus 339 v~s 341 (381)
T 3q6k_A 339 FMS 341 (381)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 354
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=88.27 E-value=30 Score=37.06 Aligned_cols=202 Identities=13% Similarity=0.018 Sum_probs=100.5
Q ss_pred CcEEEEEeCCCeEEEEECCC-CceEEEe--cCCCCCeEEEEEcC--CCCEEEEEECCC----eEEEEECCCCeEEEEEcC
Q 003445 29 SRVLVTGGEDHKVNLWAIGK-PNAILSL--SGHTSGIDSVSFDS--SEVLVAAGAASG----TIKLWDLEEAKIVRTLTG 99 (819)
Q Consensus 29 ~~~Latgs~Dg~V~IWdl~~-~~~i~~l--~~h~~~V~~l~fsp--dg~~Lasgs~DG----~I~IWDl~s~~~i~~l~~ 99 (819)
...|++|...| +.+++... +.....+ ......|.+|++.| .+.++ +++..| .|...+ ..++....+..
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~-~g~~~g~~g~gl~~s~-D~G~tW~~~~~ 98 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERML-MAARTGHLGPTVFRSD-DGGGNWTEATR 98 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEE-EEEEC--CCEEEEEES-STTSCCEECSB
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEE-EEecCCCCCccEEEeC-CCCCCceECCc
Confidence 44677788777 55555432 2222221 12345799999998 44444 444444 444432 22322222211
Q ss_pred --------------CCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCCeEEEEEec-------------------CCC
Q 003445 100 --------------HRSNCISVDFHPF--GEFFASGSLDTNLKIWDIRKKGCIHTYKG-------------------HTR 144 (819)
Q Consensus 100 --------------h~~~I~sl~fsp~--g~~Lasgs~Dg~I~IwDi~t~~~i~~~~~-------------------h~~ 144 (819)
....|.++++.|. ...+.+++..+.|+..+- .++.-..+.. ...
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCC
Confidence 1124778889872 455566555666655542 2222112211 123
Q ss_pred CeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEecC-------------CCCeEEEEEeCC-CCEEEEEECCCeE
Q 003445 145 GVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH-------------EGQIQCIDFHPH-EFLLATGSADRTV 209 (819)
Q Consensus 145 ~I~sl~fsp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h-------------~~~I~sl~fspd-g~~Lasgs~Dg~I 209 (819)
.+.+|.+.| +...|+.+..++.|...+ ..++....+... ...+.++.++|+ ...|+++...+ |
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l 255 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-I 255 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-E
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-E
Confidence 578999987 344455555555444432 223322222110 124889999986 45666676544 5
Q ss_pred EEEECCCCeEEEEeCC--CC---CCeeEEEEeC
Q 003445 210 KFWDLETFELIGSAGP--ET---SGVRCLTFNP 237 (819)
Q Consensus 210 ~iwDl~~~~~l~~~~~--~~---~~I~sl~fsp 237 (819)
...+ ..++....+.. .. ..+.++.++|
T Consensus 256 ~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p 287 (394)
T 3b7f_A 256 YRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQ 287 (394)
T ss_dssp EEEE-TTTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred EEeC-CCCCcceECCCCCCCCCccceEEEEECC
Confidence 4443 22333333221 11 3456778876
No 355
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=81.22 E-value=53 Score=33.81 Aligned_cols=195 Identities=10% Similarity=-0.043 Sum_probs=113.3
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEEC---CCCceEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC-
Q 003445 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAI---GKPNAILSLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEEA- 91 (819)
Q Consensus 17 ~~V~~lafsp~~~~~Latgs~Dg~V~IWdl---~~~~~i~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~s~- 91 (819)
+.+..+.... ....|+.-+.+|.++--.+ ........+. ....|..+.... ++.+++..+.+|.++...+..-
T Consensus 24 D~~~~~~~~~-t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 24 APVVNILRVP-FTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCEEEEEEEE-TTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CeEEEEEEEC-CCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 4566666555 3344566667787765433 2221110133 345666664421 4678999999999999987543
Q ss_pred -----eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC---------CeEEEEEecCCCCeEEEEEcCCCCE
Q 003445 92 -----KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK---------KGCIHTYKGHTRGVNAIRFTPDGRW 157 (819)
Q Consensus 92 -----~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t---------~~~i~~~~~h~~~I~sl~fspdg~~ 157 (819)
.....+. ..+.+..+........++..+..|.++.+.... |.....+. ....|..+...+++..
T Consensus 102 ~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 102 YKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPY 179 (276)
T ss_dssp TCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSE
T ss_pred hhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCE
Confidence 2222233 234566665655666888889999988887532 11222232 2345666655566678
Q ss_pred EEEEECCCeEEEEECCC-------CeEEEEEecCCCCeEEEEEeCCCCEEEEEECCCeEEE--EECCC
Q 003445 158 VVSGGEDNTVKLWDLTA-------GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKF--WDLET 216 (819)
Q Consensus 158 L~sgs~Dg~I~IwDl~t-------~~~i~~~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~i--wDl~~ 216 (819)
++..+..|.++...+.. ++-+..+ ...+.+..+....++..++..+.+|.+.. ++...
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 99999999999887632 2223333 23344554443334445666667777776 76643
No 356
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=80.77 E-value=61 Score=34.27 Aligned_cols=195 Identities=9% Similarity=0.035 Sum_probs=112.3
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEEC---C------CCceEEE---ecCCCCCeEEEE-EcC--CCCEEEEEECCCe
Q 003445 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAI---G------KPNAILS---LSGHTSGIDSVS-FDS--SEVLVAAGAASGT 82 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latgs~Dg~V~IWdl---~------~~~~i~~---l~~h~~~V~~l~-fsp--dg~~Lasgs~DG~ 82 (819)
.+..+.... ....|+.-+..|.++-... . .|..+.. +. ....|..+. +.. ++.+++..+.+|.
T Consensus 43 ~~~~~~~~~-t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~ 120 (327)
T 3uc1_A 43 IVAHFFVCS-THDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGL 120 (327)
T ss_dssp CEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSE
T ss_pred EEEEEEEeC-CCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCE
Confidence 444444444 3444555566676665543 2 1222111 22 234555554 332 5779999999999
Q ss_pred EEEEECCCC-------eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC--CC---------eEEEEEecCCC
Q 003445 83 IKLWDLEEA-------KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR--KK---------GCIHTYKGHTR 144 (819)
Q Consensus 83 I~IWDl~s~-------~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~--t~---------~~i~~~~~h~~ 144 (819)
++...+... .....+.. .+.+..+........++..+..|.+..+... .- .....+. ...
T Consensus 121 iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d 198 (327)
T 3uc1_A 121 VKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDD 198 (327)
T ss_dssp EEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTC
T ss_pred EEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCC
Confidence 999987542 22223333 3456556555566788888899998888766 21 1111122 234
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCC-------CeEEEEEe--cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECC
Q 003445 145 GVNAIRFTPDGRWVVSGGEDNTVKLWDLTA-------GKLLHDFK--CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE 215 (819)
Q Consensus 145 ~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t-------~~~i~~~~--~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~ 215 (819)
.|.++...+++.+++..+..|.++.-.+.. ++-+..++ ...+.+..+....+...++..+.+|.+.-++..
T Consensus 199 ~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 199 RLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp CEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 577776666677899999999999887532 12222222 213445555444444566666777877777765
Q ss_pred C
Q 003445 216 T 216 (819)
Q Consensus 216 ~ 216 (819)
.
T Consensus 279 ~ 279 (327)
T 3uc1_A 279 Q 279 (327)
T ss_dssp G
T ss_pred h
Confidence 4
No 357
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=80.13 E-value=62 Score=33.91 Aligned_cols=186 Identities=8% Similarity=-0.004 Sum_probs=111.5
Q ss_pred CCcEEEEEeCCCeEEEEECCCCce-------EE--EecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE----
Q 003445 28 SSRVLVTGGEDHKVNLWAIGKPNA-------IL--SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIV---- 94 (819)
Q Consensus 28 ~~~~Latgs~Dg~V~IWdl~~~~~-------i~--~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i---- 94 (819)
...++++.+.+|.|+-..+..... +. .+.. .+.+..+........++..+..|.++-+....-...
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 456788899999999887643211 11 1222 234555555555566777788998877765321110
Q ss_pred --------EEEcCCCCCeEEEEEec---CCCEEEEEECCCcEEEEECCCC-------eEEEEEecCCCCeEEEEEcCCCC
Q 003445 95 --------RTLTGHRSNCISVDFHP---FGEFFASGSLDTNLKIWDIRKK-------GCIHTYKGHTRGVNAIRFTPDGR 156 (819)
Q Consensus 95 --------~~l~~h~~~I~sl~fsp---~g~~Lasgs~Dg~I~IwDi~t~-------~~i~~~~~h~~~I~sl~fspdg~ 156 (819)
..+. ....|.++...+ ...+|+..+..|.++...+... .....+.. .+.+..+....++.
T Consensus 86 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 86 KGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE 163 (312)
T ss_dssp --CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred CCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence 0112 223455554433 4668888999999999877432 22222332 45566665555566
Q ss_pred EEEEEECCCeEEEEECCC----C---eEEEEEec-CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 003445 157 WVVSGGEDNTVKLWDLTA----G---KLLHDFKC-HEGQIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (819)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t----~---~~i~~~~~-h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~ 216 (819)
.++..+.+|.+..+.... + +-+..++. ....|..+....++..|++.+..|..+..++..
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 788899999998887643 1 11222221 234566666555666788888999999988754
No 358
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=79.76 E-value=51 Score=34.91 Aligned_cols=156 Identities=10% Similarity=-0.033 Sum_probs=94.3
Q ss_pred CCCEEEEEEeeC--CCcEEEEEeCCCeEEEEECCCC-------ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003445 16 SSTVNCLKIGRK--SSRVLVTGGEDHKVNLWAIGKP-------NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (819)
Q Consensus 16 ~~~V~~lafsp~--~~~~Latgs~Dg~V~IWdl~~~-------~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (819)
...|..+...++ ...++++.+.+|.++-..+... .....+.. .+.+..+........|+..+..|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence 345665544432 4678999999999999886432 22223333 3455555555556677788899999988
Q ss_pred ECC--CC---------eEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-------eEEEEEe--cCCCCe
Q 003445 87 DLE--EA---------KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-------GCIHTYK--GHTRGV 146 (819)
Q Consensus 87 Dl~--s~---------~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~-------~~i~~~~--~h~~~I 146 (819)
... .- .....+. ....|.++...+.+.+++..+..|.++.-.+..- +-+..++ ...+.+
T Consensus 173 ~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~l 251 (327)
T 3uc1_A 173 SATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRL 251 (327)
T ss_dssp ECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSE
T ss_pred ECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeE
Confidence 776 21 1111122 3456777766666778999999999998875421 1122222 213345
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECC
Q 003445 147 NAIRFTPDGRWVVSGGEDNTVKLWDLT 173 (819)
Q Consensus 147 ~sl~fspdg~~L~sgs~Dg~I~IwDl~ 173 (819)
..+....+...++..+.+|.+.-++..
T Consensus 252 v~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 252 VGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 444444445567777778877777654
No 359
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=76.40 E-value=1e+02 Score=34.30 Aligned_cols=104 Identities=14% Similarity=0.201 Sum_probs=61.2
Q ss_pred CeEEEEEcCCCC-EEEEEECCCeEEEEECCCC---eEEEEEc---------CCCCCeEEEEEecC----CCEEEEEEC--
Q 003445 61 GIDSVSFDSSEV-LVAAGAASGTIKLWDLEEA---KIVRTLT---------GHRSNCISVDFHPF----GEFFASGSL-- 121 (819)
Q Consensus 61 ~V~~l~fspdg~-~Lasgs~DG~I~IWDl~s~---~~i~~l~---------~h~~~I~sl~fsp~----g~~Lasgs~-- 121 (819)
..+.|+|.|++. .|+++...|.|++++.... ..+..+. ........|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 467899999985 3444578999999975422 1222221 11356789999996 333333221
Q ss_pred C----------CcEEEEECCC----------CeEEEEEe--cCCCCeEEEEEcCCCCEEEEEECC
Q 003445 122 D----------TNLKIWDIRK----------KGCIHTYK--GHTRGVNAIRFTPDGRWVVSGGED 164 (819)
Q Consensus 122 D----------g~I~IwDi~t----------~~~i~~~~--~h~~~I~sl~fspdg~~L~sgs~D 164 (819)
+ ..|.-|.+.. .+.+..+. ........|+|.|||.+.++.++.
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 1344455532 23344333 112346789999999877776654
No 360
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=69.48 E-value=1.1e+02 Score=31.50 Aligned_cols=154 Identities=8% Similarity=0.032 Sum_probs=93.2
Q ss_pred CCCEEEEEEeeC-CCcEEEEEeCCCeEEEEECCCCc------eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003445 16 SSTVNCLKIGRK-SSRVLVTGGEDHKVNLWAIGKPN------AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (819)
Q Consensus 16 ~~~V~~lafsp~-~~~~Latgs~Dg~V~IWdl~~~~------~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (819)
...|..+.. .+ +..+++..+.+|.++-..+.... ....+. ..+.+..+........|+..+..|.+..+..
T Consensus 67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSV 144 (276)
T ss_dssp TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEh
Confidence 456666644 32 45689999999999999875432 122233 2345666666656667888899999988876
Q ss_pred CC---------CeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-------CeEEEEEecCCCCeEEEEEc
Q 003445 89 EE---------AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK-------KGCIHTYKGHTRGVNAIRFT 152 (819)
Q Consensus 89 ~s---------~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t-------~~~i~~~~~h~~~I~sl~fs 152 (819)
.. |.....+. ..+.|.++....++.+++..+..|.++...+.. ++-+..+ ...+.+..+...
T Consensus 145 ~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~ 222 (276)
T 3no0_A 145 REVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPI 222 (276)
T ss_dssp GGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEE
T ss_pred hhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEe
Confidence 32 22222232 235566666566677899999999999887642 2222223 233444444333
Q ss_pred CCCCEEEEEECCCeEEE--EECC
Q 003445 153 PDGRWVVSGGEDNTVKL--WDLT 173 (819)
Q Consensus 153 pdg~~L~sgs~Dg~I~I--wDl~ 173 (819)
.+...++..+.+|.+.. ++..
T Consensus 223 ~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 223 KEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp SSEEEEEEEETTSCEEEEEEEGG
T ss_pred CCCCEEEEEcCCCeEEEeeeCHH
Confidence 33445666677777666 6543
No 361
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=68.19 E-value=2e+02 Score=34.17 Aligned_cols=147 Identities=10% Similarity=0.157 Sum_probs=79.3
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCC-------CCCeEEEEEcCCC-CEEEEEECCCe----E
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGH-------TSGIDSVSFDSSE-VLVAAGAASGT----I 83 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~~~~~i~~l~~h-------~~~V~~l~fspdg-~~Lasgs~DG~----I 83 (819)
.+.|.+|+++|.+...+++++..+.|...+ ..++.-..+..+ ...|.+|+++|.. ..++++..... -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 468999999997777788888777776665 334433333322 2469999999843 44444433211 2
Q ss_pred EEE-ECCCCeEEEEEcCC---------CCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeEEEEEec------CCCCe
Q 003445 84 KLW-DLEEAKIVRTLTGH---------RSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTYKG------HTRGV 146 (819)
Q Consensus 84 ~IW-Dl~s~~~i~~l~~h---------~~~I~sl~fsp~g-~~Lasgs~Dg~I~IwDi~t~~~i~~~~~------h~~~I 146 (819)
.|| ..+.|+.-..+... ...+..++++|.. ..++.+...+.|+ ...+.++.-..+.. ....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 333 33444443333210 1134568888754 4555555344332 12222222222211 12457
Q ss_pred EEEEEcC-CCCEEEEEECC
Q 003445 147 NAIRFTP-DGRWVVSGGED 164 (819)
Q Consensus 147 ~sl~fsp-dg~~L~sgs~D 164 (819)
..+.++| ++..++++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 8899988 44566666654
No 362
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=68.06 E-value=1.4e+02 Score=32.32 Aligned_cols=134 Identities=13% Similarity=0.170 Sum_probs=86.6
Q ss_pred CeEEEEECCCC--eEEEEEecC------CCCeEEEEEe---CC----CCEEEEEE-CCCeEEEEECCCCeEEEEeC----
Q 003445 165 NTVKLWDLTAG--KLLHDFKCH------EGQIQCIDFH---PH----EFLLATGS-ADRTVKFWDLETFELIGSAG---- 224 (819)
Q Consensus 165 g~I~IwDl~t~--~~i~~~~~h------~~~I~sl~fs---pd----g~~Lasgs-~Dg~I~iwDl~~~~~l~~~~---- 224 (819)
..|.+||+.++ +.++.+... .+.+..+.+. |+ +.++.... ..+-|.+||+.+++......
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 46889999999 888887642 2357888887 22 34544444 46789999999877554431
Q ss_pred CC--------------CCCeeEEEEeCC----CCEEEEEECCCEEEEEecCCcee--------eee-ecc-ccceeEeEe
Q 003445 225 PE--------------TSGVRCLTFNPD----GRTLLCGLHESLKVFSWEPIRCH--------DAV-DVG-WSRLSDLNV 276 (819)
Q Consensus 225 ~~--------------~~~I~sl~fspd----g~~Lasgs~d~I~Vwd~~~~~~~--------~~~-~~~-~s~i~~l~~ 276 (819)
+. ...+..|+++|+ ++.|+...-.+-++|.+.+.-.. ..+ ..+ .+....+..
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 11 247889999998 88998887777788887642111 111 111 111122333
Q ss_pred --cCCCEEEEEEcCCeEEEEEecC
Q 003445 277 --HEGKLLGCSYNQSCVGVWVVDI 298 (819)
Q Consensus 277 --~dg~lLa~~~~Dg~V~IW~ld~ 298 (819)
.+|.++++-.+.+.|..|+.+.
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTS
T ss_pred eCCCCeEEEEeccCCeEEEEeCCC
Confidence 3466667777888999999876
No 363
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=63.60 E-value=2.3e+02 Score=35.28 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=31.8
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe
Q 003445 146 VNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182 (819)
Q Consensus 146 I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~ 182 (819)
+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4556666788899999999999999999999988865
No 364
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=60.19 E-value=1.9e+02 Score=31.10 Aligned_cols=143 Identities=10% Similarity=0.020 Sum_probs=87.5
Q ss_pred CCcEEEEEeCCCeEEEEECCC---------CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC---------
Q 003445 28 SSRVLVTGGEDHKVNLWAIGK---------PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE--------- 89 (819)
Q Consensus 28 ~~~~Latgs~Dg~V~IWdl~~---------~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~--------- 89 (819)
...++++.+.+|.|+--.+.. +.....+. ....+..+........|+..+..|.++.+...
T Consensus 6 ~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a 84 (370)
T 3l6v_A 6 PEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNA 84 (370)
T ss_dssp CCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTS
T ss_pred CCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCccc
Confidence 556889999999999865421 23333444 34566666666666777777888988766542
Q ss_pred CCeEEEE---EcCCCCCeEEEEEec---CCCEEEEEECCCcEEEEECCC-------CeEEEEEecCCCCeEEEEEcCCCC
Q 003445 90 EAKIVRT---LTGHRSNCISVDFHP---FGEFFASGSLDTNLKIWDIRK-------KGCIHTYKGHTRGVNAIRFTPDGR 156 (819)
Q Consensus 90 s~~~i~~---l~~h~~~I~sl~fsp---~g~~Lasgs~Dg~I~IwDi~t-------~~~i~~~~~h~~~I~sl~fspdg~ 156 (819)
.|..+.. +. ....|.++.... .+.+|+.++..|.++...+.. +.....++. .+.+..+.......
T Consensus 85 ~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~~ 162 (370)
T 3l6v_A 85 RGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGDR 162 (370)
T ss_dssp CCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSCC
T ss_pred CCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCCc
Confidence 1222211 22 234565554432 356899999999999987642 111122332 34455555555556
Q ss_pred EEEEEECCCeEEEEECC
Q 003445 157 WVVSGGEDNTVKLWDLT 173 (819)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~ 173 (819)
.++..+.+|.+..++..
T Consensus 163 ~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 163 DVLLFASNGKTVRFGES 179 (370)
T ss_dssp EEEEEETTSEEEEEEGG
T ss_pred eEEEEeCCCeEEEEEcc
Confidence 78888899988888753
No 365
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=58.42 E-value=1.8e+02 Score=30.25 Aligned_cols=186 Identities=9% Similarity=0.001 Sum_probs=105.7
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEE---------EecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC---------
Q 003445 28 SSRVLVTGGEDHKVNLWAIGKPNAIL---------SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE--------- 89 (819)
Q Consensus 28 ~~~~Latgs~Dg~V~IWdl~~~~~i~---------~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~--------- 89 (819)
+..++++.+.+|.|+--.+...+... .+.. .+.+..+........|+..+..|.++-+...
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 34578888999999877664422211 1222 2344444444455566677788887766542
Q ss_pred CCeEEE---EEcCCCCCeEEEEEe---cCCCEEEEEECCCcEEEEECCC-------CeEEEEEecCCCCeEEEEEcCCCC
Q 003445 90 EAKIVR---TLTGHRSNCISVDFH---PFGEFFASGSLDTNLKIWDIRK-------KGCIHTYKGHTRGVNAIRFTPDGR 156 (819)
Q Consensus 90 s~~~i~---~l~~h~~~I~sl~fs---p~g~~Lasgs~Dg~I~IwDi~t-------~~~i~~~~~h~~~I~sl~fspdg~ 156 (819)
.|..+. .+. ....|.++..- .++.+++..+.+|.++-..+.. +.....+..+ +.+..+.......
T Consensus 81 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 81 RGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGED 158 (307)
T ss_dssp CCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTC
T ss_pred CCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCC
Confidence 122211 122 33456555442 3456899999999999987642 1111223333 4555555555556
Q ss_pred EEEEEECCCeEEEEECCCC-------eEEEEEec-CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 003445 157 WVVSGGEDNTVKLWDLTAG-------KLLHDFKC-HEGQIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (819)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t~-------~~i~~~~~-h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~ 216 (819)
.++..+.+|.+..++...- .-+.-+.. ....|.++....++..|++.+..|.++-.++..
T Consensus 159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 7888889999888876321 11111221 234566665555566788888999988887743
No 366
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=57.40 E-value=1.8e+02 Score=30.17 Aligned_cols=185 Identities=9% Similarity=0.023 Sum_probs=105.9
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeE-------EE--EEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC---CeEE
Q 003445 69 SSEVLVAAGAASGTIKLWDLEEAKI-------VR--TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK---KGCI 136 (819)
Q Consensus 69 pdg~~Lasgs~DG~I~IWDl~s~~~-------i~--~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t---~~~i 136 (819)
+++.++++.+.+|.|+-..+..-+. +. .+. ..+.+..+........++..+..|.++-+.... ....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 4667888899999999887653321 11 122 234455555555566788888889877765532 1100
Q ss_pred ---------EEEecCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCC-------CeEEEEEecCCCCeEEEEEeCCC
Q 003445 137 ---------HTYKGHTRGVNAIRFTP---DGRWVVSGGEDNTVKLWDLTA-------GKLLHDFKCHEGQIQCIDFHPHE 197 (819)
Q Consensus 137 ---------~~~~~h~~~I~sl~fsp---dg~~L~sgs~Dg~I~IwDl~t-------~~~i~~~~~h~~~I~sl~fspdg 197 (819)
..+. ....|..+...+ ++.+|+..+..|.++...+.. |.....+.. ...+..+.....+
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 0112 123454443332 467888999999999887742 222222332 4556666665556
Q ss_pred CEEEEEECCCeEEEEECCCC---------eEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecC
Q 003445 198 FLLATGSADRTVKFWDLETF---------ELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP 257 (819)
Q Consensus 198 ~~Lasgs~Dg~I~iwDl~~~---------~~l~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~ 257 (819)
..++..+.+|.+..+..... .....+.. ...|..+..-.++..+++.+.+ ..+.+.++.
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 67888889999998887542 12222222 3455666555455555555544 466666653
No 367
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=57.07 E-value=2.9e+02 Score=32.37 Aligned_cols=220 Identities=10% Similarity=0.030 Sum_probs=112.9
Q ss_pred EEE-EeeCCCcEEEEEeCC----CeEEEEECCCCceEEE-ec-CCCC------CeEEEEEcCCCCEEEEE----------
Q 003445 21 CLK-IGRKSSRVLVTGGED----HKVNLWAIGKPNAILS-LS-GHTS------GIDSVSFDSSEVLVAAG---------- 77 (819)
Q Consensus 21 ~la-fsp~~~~~Latgs~D----g~V~IWdl~~~~~i~~-l~-~h~~------~V~~l~fspdg~~Lasg---------- 77 (819)
.+. ++|++.+.+++-+.. ..++++|+.+++.+.. +. .-+. ....++|..++.++++.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~ 212 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSS 212 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcC
Confidence 344 677666655554443 4699999998877631 11 0000 01344776344444431
Q ss_pred ECCCeEEEEECCCCe--EEEEEcCCCCCe-EEEEEecCCC-----EEEEEECC---CcEEEEECCC--CeEEEEEecCCC
Q 003445 78 AASGTIKLWDLEEAK--IVRTLTGHRSNC-ISVDFHPFGE-----FFASGSLD---TNLKIWDIRK--KGCIHTYKGHTR 144 (819)
Q Consensus 78 s~DG~I~IWDl~s~~--~i~~l~~h~~~I-~sl~fsp~g~-----~Lasgs~D---g~I~IwDi~t--~~~i~~~~~h~~ 144 (819)
+...+|+.|.+.+.. -...+.+....+ ......+++. .+++.+.+ ..+++.|... ++ +..+.....
T Consensus 213 ~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 291 (711)
T 4hvt_A 213 LYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPSD 291 (711)
T ss_dssp SSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCTT
T ss_pred CCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCCc
Confidence 112578899886542 223344333332 3344556665 24444322 4566667653 33 223322222
Q ss_pred CeEEEEEcCCCCEEEEE----------ECCCeEEEEECCCCe-------EEEE-Eec-CCCCeEEEEEeCCCCEEEEEEC
Q 003445 145 GVNAIRFTPDGRWVVSG----------GEDNTVKLWDLTAGK-------LLHD-FKC-HEGQIQCIDFHPHEFLLATGSA 205 (819)
Q Consensus 145 ~I~sl~fspdg~~L~sg----------s~Dg~I~IwDl~t~~-------~i~~-~~~-h~~~I~sl~fspdg~~Lasgs~ 205 (819)
. .+..+.++.+++.. ...+.|...|+.++. .... +.. ....+..+.|..+ .++++...
T Consensus 292 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~ 368 (711)
T 4hvt_A 292 -A-TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYD 368 (711)
T ss_dssp -C-EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEE
T ss_pred -c-eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEE
Confidence 1 12334455444422 246779999987631 1222 322 2345778888866 56777777
Q ss_pred CCe--EEEEECCCCe-EEEE-eCCC-CCCeeEEEEeCCCCEEEE
Q 003445 206 DRT--VKFWDLETFE-LIGS-AGPE-TSGVRCLTFNPDGRTLLC 244 (819)
Q Consensus 206 Dg~--I~iwDl~~~~-~l~~-~~~~-~~~I~sl~fspdg~~Las 244 (819)
++. |.++|+.+++ .... +... .+.+....+.+++..++.
T Consensus 369 ~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~ 412 (711)
T 4hvt_A 369 NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALI 412 (711)
T ss_dssp TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEE
T ss_pred CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEE
Confidence 764 6777776664 1222 2222 345666677777655543
No 368
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=51.05 E-value=2.3e+02 Score=29.35 Aligned_cols=186 Identities=12% Similarity=0.015 Sum_probs=103.8
Q ss_pred CCcEEEEEeCCCeEEEEEC---C------CCceEE---EecCCCCCeEEEEE-c--CCCCEEEEEECCCeEEEEECCC--
Q 003445 28 SSRVLVTGGEDHKVNLWAI---G------KPNAIL---SLSGHTSGIDSVSF-D--SSEVLVAAGAASGTIKLWDLEE-- 90 (819)
Q Consensus 28 ~~~~Latgs~Dg~V~IWdl---~------~~~~i~---~l~~h~~~V~~l~f-s--pdg~~Lasgs~DG~I~IWDl~s-- 90 (819)
+...|+..+..|.++-+.. . .|..+. .+. ....|..+.. . .++.+++..+.+|.++...+..
T Consensus 52 ~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~ 130 (307)
T 1zi0_A 52 THDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFN 130 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGT
T ss_pred CCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhh
Confidence 3344555666777655543 1 122111 122 2345555543 2 3556788889999999998742
Q ss_pred -----CeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC---------CeEEEEEecCCCCeEEEEEcCCCC
Q 003445 91 -----AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK---------KGCIHTYKGHTRGVNAIRFTPDGR 156 (819)
Q Consensus 91 -----~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t---------~~~i~~~~~h~~~I~sl~fspdg~ 156 (819)
+.....+..+ +.+..+........++..+.+|.+..++... |.....+. ....|.++....++.
T Consensus 131 ~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~ 208 (307)
T 1zi0_A 131 RLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDG 208 (307)
T ss_dssp TCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSC
T ss_pred ccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCC
Confidence 2222223333 5566665655566788888899888887632 11111222 234566666555566
Q ss_pred EEEEEECCCeEEEEECCC-------CeEEEE--EecCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 003445 157 WVVSGGEDNTVKLWDLTA-------GKLLHD--FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (819)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t-------~~~i~~--~~~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~ 216 (819)
.+++.+..|.++-.++.. ++-+.. +....+.+..+....+...++..+.+|.+.-+++..
T Consensus 209 ~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 209 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 788899999999887632 111211 222234555444433444455566677766666654
No 369
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=49.61 E-value=1.8e+02 Score=33.46 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=43.9
Q ss_pred CeEEEEEcCCCCEEEEEECC------------CeEEEEECCCCeEEEEEcCC-CCCeEEEEEecCCCEEEEE
Q 003445 61 GIDSVSFDSSEVLVAAGAAS------------GTIKLWDLEEAKIVRTLTGH-RSNCISVDFHPFGEFFASG 119 (819)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~D------------G~I~IWDl~s~~~i~~l~~h-~~~I~sl~fsp~g~~Lasg 119 (819)
..-.|+|++.|+++++-..+ ..+.+.+..+++..+.+.++ ...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45779999999977665432 24666677788887777665 4589999999999877665
No 370
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=48.00 E-value=4.5e+02 Score=31.88 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=33.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe
Q 003445 145 GVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182 (819)
Q Consensus 145 ~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~ 182 (819)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46777888888999999999999999999999988765
No 371
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=47.54 E-value=2e+02 Score=32.91 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=44.4
Q ss_pred CCeEEEEEcCCCCEEEEEEC------------CCeEEEEECCCCeEEEEEcCC-CCCeEEEEEecCCCEEEEEE
Q 003445 60 SGIDSVSFDSSEVLVAAGAA------------SGTIKLWDLEEAKIVRTLTGH-RSNCISVDFHPFGEFFASGS 120 (819)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~------------DG~I~IWDl~s~~~i~~l~~h-~~~I~sl~fsp~g~~Lasgs 120 (819)
.....|.|.++|.+.++... ...|..++..+++....+.+. ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 35678999999988774322 125777777788877766543 35789999999999877663
No 372
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=46.85 E-value=2.9e+02 Score=29.32 Aligned_cols=182 Identities=11% Similarity=0.005 Sum_probs=90.6
Q ss_pred cEEEEEeCCCeEEEEECCC-C-------ceEEEe---cC-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC------
Q 003445 30 RVLVTGGEDHKVNLWAIGK-P-------NAILSL---SG-HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA------ 91 (819)
Q Consensus 30 ~~Latgs~Dg~V~IWdl~~-~-------~~i~~l---~~-h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~------ 91 (819)
+.++.-..||.|+.|=... + ...... .. ....|..++. .....+.-..||.|..|-....
T Consensus 11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g 88 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIG 88 (389)
T ss_dssp ----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSS
T ss_pred ccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCC
Confidence 3455556778888885432 1 111111 10 0113444443 3445555578999999964321
Q ss_pred -----eEEEEEcC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-----------eEEEEEec-CCCCeEEEEEcC
Q 003445 92 -----KIVRTLTG-HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-----------GCIHTYKG-HTRGVNAIRFTP 153 (819)
Q Consensus 92 -----~~i~~l~~-h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~-----------~~i~~~~~-h~~~I~sl~fsp 153 (819)
.....+.. ....+..++...-..+.+.-..||.|+.|-.... .....+.. ....|..++..
T Consensus 89 ~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G- 167 (389)
T 3kci_A 89 GTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG- 167 (389)
T ss_dssp SSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC-
T ss_pred CcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC-
Confidence 11122221 2234555666666677777788999999954321 01111111 12246666654
Q ss_pred CCCEEEEEECCCeEEEEECCCC---------e--EEEEEec-CCCCeEEEEEeCCCCEEEEEECCCeEEEEECC
Q 003445 154 DGRWVVSGGEDNTVKLWDLTAG---------K--LLHDFKC-HEGQIQCIDFHPHEFLLATGSADRTVKFWDLE 215 (819)
Q Consensus 154 dg~~L~sgs~Dg~I~IwDl~t~---------~--~i~~~~~-h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~ 215 (819)
..+.++-..+|.|+.|-.... . ....+.. ....|..++......+.++-..||.|+.|-..
T Consensus 168 -~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 168 -GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp -SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECC
T ss_pred -cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCC
Confidence 445666678999999965321 0 1111111 23456677665433566666789999999643
No 373
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=43.30 E-value=1.7e+02 Score=36.47 Aligned_cols=36 Identities=25% Similarity=0.197 Sum_probs=31.1
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 003445 188 IQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA 223 (819)
Q Consensus 188 I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~ 223 (819)
+.+++..++..++++-+.|+++++|++.+++++.+.
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 455666778899999999999999999999998874
No 374
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=40.60 E-value=3.4e+02 Score=28.33 Aligned_cols=186 Identities=10% Similarity=0.013 Sum_probs=107.7
Q ss_pred CCcEEEEEeCCCeEEEEECCCC----ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC---------CCeEE
Q 003445 28 SSRVLVTGGEDHKVNLWAIGKP----NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE---------EAKIV 94 (819)
Q Consensus 28 ~~~~Latgs~Dg~V~IWdl~~~----~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~---------s~~~i 94 (819)
...++++.+.+|.|+--.+... .....+.. .+.+..+........|+..+..|.++-+... .|.++
T Consensus 4 ~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i 82 (323)
T 1wp5_A 4 SEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHI 82 (323)
T ss_dssp CCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEG
T ss_pred CCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcCh
Confidence 4567888899999987765311 11112332 3345555555555666677888987766542 12221
Q ss_pred EE---EcCCCCCeEEEEEecC---CCEEEEEECCCcEEEEECCC--------CeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 003445 95 RT---LTGHRSNCISVDFHPF---GEFFASGSLDTNLKIWDIRK--------KGCIHTYKGHTRGVNAIRFTPDGRWVVS 160 (819)
Q Consensus 95 ~~---l~~h~~~I~sl~fsp~---g~~Lasgs~Dg~I~IwDi~t--------~~~i~~~~~h~~~I~sl~fspdg~~L~s 160 (819)
.. +. ....|.++...++ +.+++.++.+|.++...+.. +.....+.. .+.+..+........++.
T Consensus 83 ~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 83 ANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEE
T ss_pred hhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEE
Confidence 11 11 2344555433332 56899999999999987742 111112332 245555555555667888
Q ss_pred EECCCeEEEEECCC-------CeEEEEEec-CCCCeEEEEEeCCCC-EEEEEECCCeEEEEECCC
Q 003445 161 GGEDNTVKLWDLTA-------GKLLHDFKC-HEGQIQCIDFHPHEF-LLATGSADRTVKFWDLET 216 (819)
Q Consensus 161 gs~Dg~I~IwDl~t-------~~~i~~~~~-h~~~I~sl~fspdg~-~Lasgs~Dg~I~iwDl~~ 216 (819)
.+.+|.+..+.... .+-+.-++. ....|.++...+++. .|++.+..|..+..++..
T Consensus 161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 88999988887642 111222222 234566665544444 788888899888877754
No 375
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.71 E-value=6.2e+02 Score=30.59 Aligned_cols=37 Identities=24% Similarity=0.192 Sum_probs=33.1
Q ss_pred CeEEEEEeCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 003445 187 QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA 223 (819)
Q Consensus 187 ~I~sl~fspdg~~Lasgs~Dg~I~iwDl~~~~~l~~~ 223 (819)
.+.+++..++..++++-+.|+++++|++.+++++...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4677888888999999999999999999999988874
No 376
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=36.17 E-value=1.3e+02 Score=35.48 Aligned_cols=36 Identities=25% Similarity=0.578 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec
Q 003445 146 VNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC 183 (819)
Q Consensus 146 I~sl~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~ 183 (819)
|.++.+ +..++++-+.|..+|+||+.+++++.+...
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 555544 467999999999999999999998888764
No 377
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=34.69 E-value=6.1e+02 Score=29.58 Aligned_cols=193 Identities=11% Similarity=0.064 Sum_probs=100.7
Q ss_pred eEEEE-EcCCCCEEEEEEC-----CCeEEEEECCCCeEEEE-Ec-CCCC------CeEEEEEecCCCEEEEEEC------
Q 003445 62 IDSVS-FDSSEVLVAAGAA-----SGTIKLWDLEEAKIVRT-LT-GHRS------NCISVDFHPFGEFFASGSL------ 121 (819)
Q Consensus 62 V~~l~-fspdg~~Lasgs~-----DG~I~IWDl~s~~~i~~-l~-~h~~------~I~sl~fsp~g~~Lasgs~------ 121 (819)
...+. ++|++++++.+-. -..++++|+.+++.+.. +. .-+. ....++|..++ .++.+..
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~-~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKD-TIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETT-EEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCC-EEEEEeCCCCCCc
Confidence 34455 7899887665422 24799999999987631 11 0000 01344787444 4444321
Q ss_pred -----CCcEEEEECCCCe--EEEEEecCCCCe-EEEEEcCCCCE-----EEEEEC---CCeEEEEECCC--CeEEEEEec
Q 003445 122 -----DTNLKIWDIRKKG--CIHTYKGHTRGV-NAIRFTPDGRW-----VVSGGE---DNTVKLWDLTA--GKLLHDFKC 183 (819)
Q Consensus 122 -----Dg~I~IwDi~t~~--~i~~~~~h~~~I-~sl~fspdg~~-----L~sgs~---Dg~I~IwDl~t--~~~i~~~~~ 183 (819)
...|+.|.+-+.. -...+.+....+ .....++++++ +++.+. ...+.+.|... ++.. .+..
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ 288 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ-KINM 288 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE-ECCS
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce-Eeec
Confidence 2468888876542 233344333332 34455666662 444332 24567777653 4322 2222
Q ss_pred CCCCeEEEEEeCCCCEEEEE----------ECCCeEEEEECCCCe-------EEEE-e-CCCCCCeeEEEEeCCCCEEEE
Q 003445 184 HEGQIQCIDFHPHEFLLATG----------SADRTVKFWDLETFE-------LIGS-A-GPETSGVRCLTFNPDGRTLLC 244 (819)
Q Consensus 184 h~~~I~sl~fspdg~~Lasg----------s~Dg~I~iwDl~~~~-------~l~~-~-~~~~~~I~sl~fspdg~~Las 244 (819)
.... .+..+.++.+++.. ...+.|..+|+.++. .... + ......+..+.|..+ .++++
T Consensus 289 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 289 PSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp CTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred CCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 2221 22344566555532 246779999987631 1111 2 223445778888876 45555
Q ss_pred EECCC---EEEEEecCCc
Q 003445 245 GLHES---LKVFSWEPIR 259 (819)
Q Consensus 245 gs~d~---I~Vwd~~~~~ 259 (819)
...++ +.++++..+.
T Consensus 366 ~~~~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENEQ 383 (711)
T ss_dssp EEETTEEEEEEECEETTE
T ss_pred EEECCEEEEEEEECCCCc
Confidence 55553 6677765553
No 378
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=30.49 E-value=5.2e+02 Score=27.50 Aligned_cols=113 Identities=16% Similarity=0.102 Sum_probs=65.4
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC---------CCceEE---EecCCCCCeEEEEE-c--CCCCEEEEEECC
Q 003445 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG---------KPNAIL---SLSGHTSGIDSVSF-D--SSEVLVAAGAAS 80 (819)
Q Consensus 16 ~~~V~~lafsp~~~~~Latgs~Dg~V~IWdl~---------~~~~i~---~l~~h~~~V~~l~f-s--pdg~~Lasgs~D 80 (819)
.+.+..+.... +...|+..+..|.++-+... .|..+. .+. ....|.++.. . .++.+|+.++..
T Consensus 45 ~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~ 122 (370)
T 3l6v_A 45 EDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRN 122 (370)
T ss_dssp CCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETT
T ss_pred CCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCC
Confidence 34555555544 44456666677877665531 122211 122 2345555543 2 245688999999
Q ss_pred CeEEEEECCC-------CeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC
Q 003445 81 GTIKLWDLEE-------AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR 131 (819)
Q Consensus 81 G~I~IWDl~s-------~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~ 131 (819)
|.++...+.. |.....+.. .+.+..+........++..+.+|.+..++..
T Consensus 123 G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 123 GTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp SEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEEGG
T ss_pred CeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEEcc
Confidence 9999998743 222223332 3455555555556678888889988888653
No 379
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=27.99 E-value=1.3e+02 Score=34.70 Aligned_cols=59 Identities=24% Similarity=0.265 Sum_probs=42.6
Q ss_pred eEEEEEeCCCCEEEEEECC------------CeEEEEECCCCeEEEEeC-CCCCCeeEEEEeCCCCEEEEEE
Q 003445 188 IQCIDFHPHEFLLATGSAD------------RTVKFWDLETFELIGSAG-PETSGVRCLTFNPDGRTLLCGL 246 (819)
Q Consensus 188 I~sl~fspdg~~Lasgs~D------------g~I~iwDl~~~~~l~~~~-~~~~~I~sl~fspdg~~Lasgs 246 (819)
.-.|+|+|.|.+++.-..+ ..+.+.+..+++...-+. +....++.++|+||++.|++..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 4678999999866665432 246677777777655443 3456799999999999998763
No 380
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=27.09 E-value=5.5e+02 Score=26.66 Aligned_cols=196 Identities=8% Similarity=-0.008 Sum_probs=104.8
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECC---------CCceEE---EecCCCCCeEEE-EEcC--CCCEEEEEECCCe
Q 003445 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIG---------KPNAIL---SLSGHTSGIDSV-SFDS--SEVLVAAGAASGT 82 (819)
Q Consensus 18 ~V~~lafsp~~~~~Latgs~Dg~V~IWdl~---------~~~~i~---~l~~h~~~V~~l-~fsp--dg~~Lasgs~DG~ 82 (819)
.+..+.... +...|+..+..|.++-+... .|..+. .+. ....|..+ .... ++.+++..+.+|.
T Consensus 40 ~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~ 117 (323)
T 1wp5_A 40 RLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGM 117 (323)
T ss_dssp CEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSE
T ss_pred EEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCe
Confidence 344444443 44456666677876665541 122111 122 23345554 3432 3567888899999
Q ss_pred EEEEECCC--------CeEEEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-------eEEEEEec-CCCCe
Q 003445 83 IKLWDLEE--------AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-------GCIHTYKG-HTRGV 146 (819)
Q Consensus 83 I~IWDl~s--------~~~i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t~-------~~i~~~~~-h~~~I 146 (819)
++...+.. |.....+.. .+.+..+........++..+.+|.+..+....- .-+.-+.- ....|
T Consensus 118 iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~V 196 (323)
T 1wp5_A 118 VKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYI 196 (323)
T ss_dssp EEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCE
T ss_pred EEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEE
Confidence 99998742 222222332 255666666555667888889999888876421 11111211 23446
Q ss_pred EEEEEcCCCC-EEEEEECCCeEEEEECCC-------CeEEEEEe---cCCCCeEEEEEeCCCCEEEEEECCCeEEEEECC
Q 003445 147 NAIRFTPDGR-WVVSGGEDNTVKLWDLTA-------GKLLHDFK---CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE 215 (819)
Q Consensus 147 ~sl~fspdg~-~L~sgs~Dg~I~IwDl~t-------~~~i~~~~---~h~~~I~sl~fspdg~~Lasgs~Dg~I~iwDl~ 215 (819)
.++...+++. .|++.+..|..+..++.. ++-+..++ .....+..+....++..++..+.+|.+.-+.+.
T Consensus 197 v~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 197 VSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred EEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 6665444445 788888999988877643 22222222 112244433332333445555566666655554
Q ss_pred C
Q 003445 216 T 216 (819)
Q Consensus 216 ~ 216 (819)
.
T Consensus 277 ~ 277 (323)
T 1wp5_A 277 D 277 (323)
T ss_dssp G
T ss_pred h
Confidence 3
No 381
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=26.92 E-value=3.1e+02 Score=27.60 Aligned_cols=141 Identities=6% Similarity=-0.062 Sum_probs=78.5
Q ss_pred EEEEEECCCeEEEEECCCCeE-EEEEcCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC---C----CeEE---EEEec
Q 003445 73 LVAAGAASGTIKLWDLEEAKI-VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR---K----KGCI---HTYKG 141 (819)
Q Consensus 73 ~Lasgs~DG~I~IWDl~s~~~-i~~l~~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~---t----~~~i---~~~~~ 141 (819)
.+++.+.+|.|+--....... ...+.. .+.+..+........|+..+..|.++-+... . |..+ ..+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke-~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~- 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKA-GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP- 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCT-TCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCC-CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-
Confidence 455667788777665432110 001222 2344444444445566777778887655432 1 2211 0122
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-------CeEEEEEecCCCCeEEEEEe-CCCCEEEEEECCCeEEEEE
Q 003445 142 HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA-------GKLLHDFKCHEGQIQCIDFH-PHEFLLATGSADRTVKFWD 213 (819)
Q Consensus 142 h~~~I~sl~fspdg~~L~sgs~Dg~I~IwDl~t-------~~~i~~~~~h~~~I~sl~fs-pdg~~Lasgs~Dg~I~iwD 213 (819)
....|.++....++.+|+.++..|.++...+.. |.....++. ...+..+... ..+..|+..+.+|.+..|+
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 234566664434567788999999999987632 333333332 2345444444 3455777888899888888
Q ss_pred CCC
Q 003445 214 LET 216 (819)
Q Consensus 214 l~~ 216 (819)
...
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
Confidence 765
No 382
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=25.94 E-value=1.8e+02 Score=33.27 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=43.5
Q ss_pred CeEEEEEeCCCCEEEEEEC------------CCeEEEEECCCCeEEEEeCC-CCCCeeEEEEeCCCCEEEEEE
Q 003445 187 QIQCIDFHPHEFLLATGSA------------DRTVKFWDLETFELIGSAGP-ETSGVRCLTFNPDGRTLLCGL 246 (819)
Q Consensus 187 ~I~sl~fspdg~~Lasgs~------------Dg~I~iwDl~~~~~l~~~~~-~~~~I~sl~fspdg~~Lasgs 246 (819)
....|.|+++|.+.+.... .+.|..++..+++....+.. ....++.++|+||++.|++..
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3578999999987774321 22677788877876555543 345689999999999999874
No 383
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=25.22 E-value=4.5e+02 Score=26.34 Aligned_cols=141 Identities=9% Similarity=-0.057 Sum_probs=76.8
Q ss_pred cEEEEEeCCCeEEEEECCCCc-eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC---C----CeEEE---EEc
Q 003445 30 RVLVTGGEDHKVNLWAIGKPN-AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE---E----AKIVR---TLT 98 (819)
Q Consensus 30 ~~Latgs~Dg~V~IWdl~~~~-~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~---s----~~~i~---~l~ 98 (819)
.++++.+.+|.|+--...... ....+... +.+..+........|+..+..|.++-+... . |..+. .+.
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 356667778877765543211 01112322 344444443344455566788887766542 2 22111 122
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-------CeEEEEEecCCCCeEEEEEc-CCCCEEEEEECCCeEEEE
Q 003445 99 GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK-------KGCIHTYKGHTRGVNAIRFT-PDGRWVVSGGEDNTVKLW 170 (819)
Q Consensus 99 ~h~~~I~sl~fsp~g~~Lasgs~Dg~I~IwDi~t-------~~~i~~~~~h~~~I~sl~fs-pdg~~L~sgs~Dg~I~Iw 170 (819)
....|.++....++.+|+.++..|.++...+.. +.....++. .+.+..+... .++..++..+.+|.+..+
T Consensus 82 -~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf 159 (256)
T 1zvt_A 82 -PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMF 159 (256)
T ss_dssp -TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred -CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEE
Confidence 234566664434567788899999999987742 222223332 2344444444 345577788888887777
Q ss_pred ECC
Q 003445 171 DLT 173 (819)
Q Consensus 171 Dl~ 173 (819)
...
T Consensus 160 ~~~ 162 (256)
T 1zvt_A 160 PVS 162 (256)
T ss_dssp EGG
T ss_pred EHH
Confidence 764
No 384
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=23.68 E-value=8.5e+02 Score=27.70 Aligned_cols=268 Identities=13% Similarity=0.171 Sum_probs=136.6
Q ss_pred cCCCEEEEEEeeCCCcEEEEEeCCCe----------------------------EEEEECCCCceEEEecCC--CCC---
Q 003445 15 HSSTVNCLKIGRKSSRVLVTGGEDHK----------------------------VNLWAIGKPNAILSLSGH--TSG--- 61 (819)
Q Consensus 15 H~~~V~~lafsp~~~~~Latgs~Dg~----------------------------V~IWdl~~~~~i~~l~~h--~~~--- 61 (819)
|-..+....|.-++..-+++...+|+ |.|+|=.+++.+..+.-. .+.
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~ 256 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSD 256 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccc
Confidence 44556666777666666777766665 666766666666554321 111
Q ss_pred ------------eEEEEEc-CCCCEEEEEE---CCCeEEEEECCCCeEEEEE--cCCC-----------CCeEEEEEecC
Q 003445 62 ------------IDSVSFD-SSEVLVAAGA---ASGTIKLWDLEEAKIVRTL--TGHR-----------SNCISVDFHPF 112 (819)
Q Consensus 62 ------------V~~l~fs-pdg~~Lasgs---~DG~I~IWDl~s~~~i~~l--~~h~-----------~~I~sl~fsp~ 112 (819)
..++++. -+.-.++.+- .-..|..||+..+++.... .... ....-..+.-|
T Consensus 257 WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgD 336 (591)
T 2zux_A 257 WGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGD 336 (591)
T ss_dssp GTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSS
T ss_pred cccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCC
Confidence 1233321 1112222221 1235888998888764433 2110 23333444445
Q ss_pred CC-EEEEEECCCcEEEEECCCCeEEEEE-ecCCCCeEEEEEcCC--CCEEEEEECCC----eEEEEECCCCeEEEEEec-
Q 003445 113 GE-FFASGSLDTNLKIWDIRKKGCIHTY-KGHTRGVNAIRFTPD--GRWVVSGGEDN----TVKLWDLTAGKLLHDFKC- 183 (819)
Q Consensus 113 g~-~Lasgs~Dg~I~IwDi~t~~~i~~~-~~h~~~I~sl~fspd--g~~L~sgs~Dg----~I~IwDl~t~~~i~~~~~- 183 (819)
|+ .|+.|+. ++| ..++.+... .+|...+..-.|.|+ |..++.+.+++ -..+.|..+|+.+.....
T Consensus 337 G~dEIv~Gs~-----~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~~~ 410 (591)
T 2zux_A 337 GKDEIIFGSM-----AVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYAG 410 (591)
T ss_dssp SSCEEEETTE-----EEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCS
T ss_pred CCceEEEeee-----EEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcCCC
Confidence 54 3444331 223 233333332 378888888889886 45677766652 355689999999988764
Q ss_pred -CCCCeEEEEEeCC--CCEEEEEECCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCC-CEEEEEECCCEEEEEecCCc
Q 003445 184 -HEGQIQCIDFHPH--EFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG-RTLLCGLHESLKVFSWEPIR 259 (819)
Q Consensus 184 -h~~~I~sl~fspd--g~~Lasgs~Dg~I~iwDl~~~~~l~~~~~~~~~I~sl~fspdg-~~Lasgs~d~I~Vwd~~~~~ 259 (819)
+.+......|.|+ |.-+.+ ++ .+|+.. ++.+....+ ...-..+-|..|. +.|+- ...|.-|++...+
T Consensus 411 ~d~Gr~~~~Didp~~pG~E~w~---~~--~l~~~~-G~~i~~~~p-~~~N~~i~WdGDl~relld--~~~i~k~~~~~~~ 481 (591)
T 2zux_A 411 KDVGRGMAADIDPRYPGQEVWA---NG--SLYSAK-GVKIGSGVP-SSTNFGIWWDGDLLREQLD--SNRIDKWDYQNGV 481 (591)
T ss_dssp SCCCCEEEECCCTTSSSCEEEE---TT--EEECTT-SCBCSSCCC-SCCSEEECCSSSSSCEEEE--TTEEEEEETTTTE
T ss_pred CCCCceeEEecCCCCCceEEEe---cC--ceECCC-CCEecCCCC-CCcceeEEECCCCcHhhhC--CceEEecccCCCc
Confidence 3455566667776 233333 22 467754 444432211 1122356777665 33332 2246667666554
Q ss_pred eeeeeecc---------cc--ceeEeEec-CCCEEEEEEcCCeEEEEEec
Q 003445 260 CHDAVDVG---------WS--RLSDLNVH-EGKLLGCSYNQSCVGVWVVD 297 (819)
Q Consensus 260 ~~~~~~~~---------~s--~i~~l~~~-dg~lLa~~~~Dg~V~IW~ld 297 (819)
...++... .. ...++... -.+++.-...+..++||...
T Consensus 482 ~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~ 531 (591)
T 2zux_A 482 SKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTT 531 (591)
T ss_dssp EEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCC
T ss_pred eeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCC
Confidence 33332211 11 11222221 12444444556679998653
No 385
>3dd7_B PHD, prevent HOST death protein; all alpha, ribosome inhibitor; HET: MSE; 1.70A {Enterobacteria phage P1}
Probab=23.23 E-value=47 Score=20.85 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=16.2
Q ss_pred HHHHHHhhHHHHHHHHHHH...
Q 003445 651 ATADVMEQHSQFVSSMQSR... 669 (819)
Q Consensus 651 ~~~~l~~~h~~~~~~l~~R... 669 (819)
.++.||..|+.-+..|..|
T Consensus 5 EFaaIm~~hg~t~~~L~dR... 23 (23)
T 3dd7_B 5 EFASLFDTLDSTNKEMVNRxxx 26 (26)
T ss_pred HHHHHHHHHhHHHHHHhcC...
Confidence 3789999999999888765
No 386
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=20.52 E-value=57 Score=26.55 Aligned_cols=46 Identities=15% Similarity=0.320 Sum_probs=37.2
Q ss_pred hhhhhhhhhHHhhhcccccchHHHHHHHH------------HHHHHHHhHHHHhhhcC
Q 003445 718 DICSCLLPLLTGLLESDMDRHLSISLDIL------------LKLVRTFGSMIYSAISA 763 (819)
Q Consensus 718 ~~c~~~lp~~~~ll~s~~e~~~~~~~~~l------------~~~~~~f~~~i~~~~~~ 763 (819)
++|-.++-.++++|..+.|.-+.-+|+-+ ..+|+.|||.|-+.+.+
T Consensus 5 ~~C~~~v~~le~~l~n~Te~~I~~~L~~vC~~l~~~~~~~C~~~V~~y~~~Ii~~L~~ 62 (74)
T 1l9l_A 5 RTCLTIVQKLKKMVDKPTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVIQGLVA 62 (74)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhcccCHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999667888888877643 45788899999888754
No 387
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=20.07 E-value=1.4e+02 Score=35.20 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=30.3
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003445 61 GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (819)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~DG~I~IWDl~s~~~i~~l~~ 99 (819)
.|.++.+ +..++++-+.|.++++|++.+++++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555555 467999999999999999999998887664
Done!