BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003446
(819 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 219 bits (557), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 200/693 (28%), Positives = 305/693 (44%), Gaps = 85/693 (12%)
Query: 130 TSYTPQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGD 189
T+ + FLG P V + + N IV+G +DTGI P PSF + F P + G
Sbjct: 1 TTRSWDFLGFPLTVPRRSQVESN----IVVGVLDTGIWPESPSFDDEG-FSPPPPKWKGT 55
Query: 190 CETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAG 249
CET F CN KI+ AR + G + D P D GHG+H ASTAAG
Sbjct: 56 CETSNNF---RCNRKIIGARSYHIGRPI-----SPGDVNGPRDTNGHGTHTASTAAGGLV 107
Query: 250 VPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVDILTLSIGPD 309
+ G G A G P ARIA YK + + D++AA D A DGVDI++LS+G
Sbjct: 108 SQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGA 167
Query: 310 EPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIY 369
P + + I A G+ +AGN GP T S SPW ++ AA T DR +
Sbjct: 168 NPRHYFVDAIAIGS---FHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKF 224
Query: 370 PXXXXXXXXXXXXXXXXXXPTCGRPLFLSKLVLARDVILRVNGTFPR-TPQYIEECQYPE 428
T + LV RD+ N F + T ++ + +
Sbjct: 225 --VTQVQIGNGQSFQGVSINTFDNQYY--PLVSGRDI---PNTGFDKSTSRFCTD----K 273
Query: 429 AFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSH-YGDFVAEPIP 487
+ P+L++G +V+C S G + +L G G ++ +N+ Y D + P+P
Sbjct: 274 SVNPNLLKGKIVVCEASFGPHEFFKSLD---------GAAGVLMTSNTRDYAD--SYPLP 322
Query: 488 FAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRF 547
+V + ++++ + R K AP+V F
Sbjct: 323 SSV-------LDPNDLLATLRYIYSIRSPGATIFK----------STTILNASAPVVVSF 365
Query: 548 SSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPH 607
SSRGP+ R DV+KPD+ PG +I AAW V+ + + F ++SGTSM+ PH
Sbjct: 366 SSRGPN-----RATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPH 420
Query: 608 IAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYN-STHFDFGSG 666
I GIA +K +NP+W+P I SA+ +TA+ + + +N F +GSG
Sbjct: 421 ITGIATYVKTYNPTWSPAAIKSALMTTAS--------------PMNARFNPQAEFAYGSG 466
Query: 667 LVSATRALDPGLVLSVEFEDYISFLCSLADSDPVSIKAATGIWCNHSLSHPA---NLNLP 723
V+ +A+ PGLV DY+ FLC + +++ TG + + + +LN P
Sbjct: 467 HVNPLKAVRPGLVYDANESDYVKFLCGQG-YNTQAVRRITGDYSACTSGNTGRVWDLNYP 525
Query: 724 SVTVSAVAKSLILQ---RSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLA 780
S +S Q R+L +V + TY + P G T+S+ P + G + +
Sbjct: 526 SFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRK-S 584
Query: 781 IQFNVTQAIGDFSFGEIVLTGSLNHIVRIPLSV 813
V +I F ++ H VR P+++
Sbjct: 585 FTLTVRGSIKGFVVSASLVWSDGVHYVRSPITI 617
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 208 bits (530), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 219/728 (30%), Positives = 340/728 (46%), Gaps = 124/728 (17%)
Query: 130 TSYTPQFLGL--PQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNI-SHF 186
T++T FL L G+W G G+ +++ +D+GI P SF + P I +
Sbjct: 1 TTHTSDFLKLNPSSGLWPASG----LGQDVIVAVLDSGIWPESASFQDDG--MPEIPKRW 54
Query: 187 SGDCETGPRFPLSSCNGKIVSARFFSAGAQAV-ATLNTSVDFLSPFDAVGHGSHVASTAA 245
G C+ G +F S CN K++ A +F+ G A T+N +++ S D GHG+H AS A
Sbjct: 55 KGICKPGTQFNASMCNRKLIGANYFNKGILANDPTVNITMN--SARDTDGHGTHCASITA 112
Query: 246 GNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVDILTLS 305
GN V G+ G A G+AP AR+AVYK + +D+IAA+DQA DGVD++++S
Sbjct: 113 GNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISIS 172
Query: 306 IGPDEPP--RDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAAC 363
G P D I++ F +M GV V +AGN+GP ++ + SPW + A+
Sbjct: 173 YGYRFIPLYEDAISIAS-FGAMM-----KGVLVSASAGNRGPGIGSLNNGSPWILCVASG 226
Query: 364 TTDRIYPXXXXXXXXXXXXXXXXXXPTCGRPLFLSKLVLARDVILRVNGTFP--RTPQYI 421
TDR + G LF ++ RD + N T + + +
Sbjct: 227 HTDRTFAGTLTLGNGLKIR---------GWSLFPAR-AFVRDSPVIYNKTLSDCSSEELL 276
Query: 422 EECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLT-AVINTAITLGFMGFILIANSHYGD 480
+ + PE ++VIC + F +Q +T A + AI FI + G
Sbjct: 277 SQVENPE--------NTIVICDDNGDFSDQMRIITRARLKAAI------FI---SEDPGV 319
Query: 481 FVAEPIPFAVPGILIPKVSTSEIILQYYE-----------QQTHRDERGVAIKFNAQAGI 529
F + P PG+++ K ++I Y + Q+T+ D +
Sbjct: 320 FRSATFPN--PGVVVNKKEGKQVI-NYVKNSVTPTATITFQETYLDTK------------ 364
Query: 530 GEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSP----VSA 585
AP+V+ S+RGP SR+ + KPD++APG I AA+ P S
Sbjct: 365 ----------PAPVVAASSARGP-----SRSYLGISKPDILAPGVLILAAYPPNVFATSI 409
Query: 586 LDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLI 645
+L ++ L SGTSMA PH AGIAA++K +P W+P+ I SA+ +TA DN + I
Sbjct: 410 GTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPI 469
Query: 646 MAEGFEITSTYNSTHFDFGSGLVSATRALDPGLVLSVEFEDYISFLCSLADSDPVSIKAA 705
+ + +T D G+G V RALDPGLV +DY++ LCSL ++ K
Sbjct: 470 K----DSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEE-QFKTI 524
Query: 706 TGIWCNHSLSHP-ANLNLPS-VTVSAVAKSLIL-----QRSLKNVGNKTETYLTSVVHPN 758
+H+ S+P A+LN PS + + ++ + L +R++ NVG TY + P
Sbjct: 525 ARSSASHNCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPK 584
Query: 759 GTTVSLYPPWFTIAPQGTQD---LAIQFNVTQAIGDFSFGEIVLTGSL-------NHIVR 808
+T+S+ P + + L I++ IGD G+ GS+ NH VR
Sbjct: 585 NSTISVSPQILVFKNKNEKQSYTLTIRY-----IGD--EGQSRNVGSITWVEQNGNHSVR 637
Query: 809 IPLSVKPV 816
P+ P+
Sbjct: 638 SPIVTSPI 645
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 77/160 (48%), Gaps = 33/160 (20%)
Query: 540 RAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLS 599
+ +++ FSSRGP + LKP+V+APG+ I AA + +++ + +
Sbjct: 305 KYDVITDFSSRGP-------TADNRLKPEVVAPGNWIIAARASGTSMGQPINDY-YTAAP 356
Query: 600 GTSMATPHIAGIAALIKQHNPSWTPTMIASAISST-----------------------AT 636
GT+MATPH+AGIAAL+ Q +PSWTP + +A+ T A
Sbjct: 357 GTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIVKPDEIADIAYGAGRVNAYKAA 416
Query: 637 KYDNYGQLIMAEGFEITSTYNSTHFDF-GSGLVSATRALD 675
YDNY +L G+ S F G+G V+AT D
Sbjct: 417 YYDNYAKLTFT-GYVSNKGSQSHQFTISGAGFVTATLYWD 455
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 20/137 (14%)
Query: 225 VDFL----SPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT 280
VDF+ +P+D GHG+HVAS AAG G GMAP A++ K +
Sbjct: 165 VDFVNGKTTPYDDNGHGTHVASIAAGTGAAS-------NGKYKGMAPGAKLVGIKVLNGQ 217
Query: 281 -VGTLADVIAAIDQATMD----GVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVF 335
G+++D+I +D A + G+ ++ LS+G + T ++ + A AG+
Sbjct: 218 GSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVN----NAWDAGLV 273
Query: 336 VVQAAGNQGPAPSTVVS 352
VV AAGN GP TV S
Sbjct: 274 VVVAAGNSGPNKYTVGS 290
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 14/85 (16%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
D++APG + + + G +A L+GTSMATPH+AG+AAL+KQ NPSW+ I
Sbjct: 191 DIVAPGVNVQSTY----------PGSTYASLNGTSMATPHVAGVAALVKQKNPSWSNVQI 240
Query: 628 ASAISSTATKYDN---YGQ-LIMAE 648
+ + +TAT N YG L+ AE
Sbjct: 241 RNHLKNTATGLGNTNLYGSGLVNAE 265
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 23/142 (16%)
Query: 229 SPFDAVGHGSHVAST-AAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADV 287
S D GHG+HVA T AA N + V+ G+AP A + K + +
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGVL----------GVAPSAELYAVKVLGASGSGSVSS 104
Query: 288 IA-AIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPA 346
IA ++ A +G+ + LS+G P + + A GV VV A+GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPSA-------TLEQAVNSATSRGVLVVAASGNSGAG 157
Query: 347 PSTVVSY-SPWAVAAAACTTDR 367
+SY + +A A A TD+
Sbjct: 158 S---ISYPARYANAMAVGATDQ 176
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 63/124 (50%), Gaps = 31/124 (25%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S RAP FSS GP+ DV+APG I +
Sbjct: 166 IAVGAVDSSNQRAP----FSSVGPEL-------------DVMAPGVSICS---------- 198
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDN---YGQ-L 644
L G + LSGTSMA+PH+AG AALI +P+WT T + S++ +TATK + YG+ L
Sbjct: 199 TLPGGKYGALSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTATKLGDSFYYGKGL 258
Query: 645 IMAE 648
I E
Sbjct: 259 INVE 262
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 63/124 (50%), Gaps = 31/124 (25%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S RAP FSS GP+ DV+APG I +
Sbjct: 166 IAVGAVDSSNQRAP----FSSVGPEL-------------DVMAPGVSICS---------- 198
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDN---YGQ-L 644
L G + LSGT+MA+PH+AG AALI +P+WT T + S++ +TATK + YG+ L
Sbjct: 199 TLPGGKYGALSGTAMASPHVAGAAALILSKHPNWTNTQVRSSLENTATKLGDSFYYGKGL 258
Query: 645 IMAE 648
I E
Sbjct: 259 INVE 262
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 14/85 (16%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
D++APG + + + G +A L+GTSMATPH+AG AAL+KQ NPSW+ I
Sbjct: 191 DIVAPGVNVQSTY----------PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQI 240
Query: 628 ASAISSTATKYDN---YGQ-LIMAE 648
+ + +TAT + YG L+ AE
Sbjct: 241 RNHLKNTATSLGSTNLYGSGLVNAE 265
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 23/142 (16%)
Query: 229 SPFDAVGHGSHVAST-AAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAM-YPTVGTLAD 286
S D GHG+HVA T AA N + V+ G+AP A + K + G ++
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGVL----------GVAPSAELYAVKVLGADGRGAISS 104
Query: 287 VIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPA 346
+ ++ A +G+ + LS+G P + + A GV VV A+GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPSA-------TLEQAVNSATSRGVLVVAASGNSG-- 155
Query: 347 PSTVVSY-SPWAVAAAACTTDR 367
++ +SY + +A A A TD+
Sbjct: 156 -ASSISYPARYANAMAVGATDQ 176
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 29/106 (27%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
D++APG + + + G +A L+GTSMATPH+AG AAL+KQ NPSW+ I
Sbjct: 191 DIVAPGVNVQSTY----------PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQI 240
Query: 628 ASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRA 673
+ + +TAT + ST+ +GSGLV+A A
Sbjct: 241 RNHLKNTAT------------------SLGSTNL-YGSGLVNAEAA 267
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 23/142 (16%)
Query: 229 SPFDAVGHGSHVAST-AAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADV 287
S D GHG+HVA T AA N + V+ G+AP A + K + +
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGVL----------GVAPNAELYAVKVLGASGSGSVSS 104
Query: 288 IA-AIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPA 346
IA ++ A +G+ + LS+G P + + A GV VV A+GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPS-------ATLEQAVNSATSRGVLVVAASGNSGAG 157
Query: 347 PSTVVSY-SPWAVAAAACTTDR 367
+SY + +A A A TD+
Sbjct: 158 S---ISYPARYANAMAVGATDQ 176
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 29/106 (27%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
D++APG + + + G +A L+GTSMATPH+AG AAL+KQ NPSW+ I
Sbjct: 191 DIVAPGVNVQSTY----------PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQI 240
Query: 628 ASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRA 673
+ + +TAT + ST+ +GSGLV+A A
Sbjct: 241 RNHLKNTAT------------------SLGSTNL-YGSGLVNAEAA 267
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 23/142 (16%)
Query: 229 SPFDAVGHGSHVAST-AAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADV 287
S D GHG+HVA T AA N + V+ G+AP A + K + + G
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGVL----------GVAPNAELYAVKVLGASGGGSNSS 104
Query: 288 IA-AIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPA 346
IA ++ A +G+ + LS+G P + + A GV VV A+GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPS-------ATLEQAVNSATSRGVLVVAASGNSGAG 157
Query: 347 PSTVVSY-SPWAVAAAACTTDR 367
+SY + +A A A TD+
Sbjct: 158 S---ISYPARYANAMAVGATDQ 176
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 29/106 (27%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
D++APG + + + G +A L+GTSMATPH+AG AAL+KQ NPSW+ I
Sbjct: 191 DIVAPGVNVQSTY----------PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQI 240
Query: 628 ASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRA 673
+ + +TAT + ST+ +GSGLV+A A
Sbjct: 241 RNHLKNTAT------------------SLGSTNL-YGSGLVNAEAA 267
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 23/142 (16%)
Query: 229 SPFDAVGHGSHVAST-AAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADV 287
S D GHG+HVA T AA N + V+ G+AP A + K + +
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGVL----------GVAPSAELYAVKVLGASGSGSVSS 104
Query: 288 IA-AIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPA 346
IA ++ A +G+ + LS+G P + + A GV VV A+GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPS-------ATLEQAVNSATSRGVLVVAASGNSGAG 157
Query: 347 PSTVVSY-SPWAVAAAACTTDR 367
+SY + +A A A TD+
Sbjct: 158 S---ISYPARYANAMAVGATDQ 176
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 60/124 (48%), Gaps = 31/124 (25%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S RA FSS GP+ DV+APG IW+
Sbjct: 163 IAVGAVDSSNQRA----SFSSVGPEL-------------DVMAPGVSIWS---------- 195
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDN---YGQ-L 644
L G + SGT MA+PH+AG AALI +P+WT T + S++ +T TK + YG+ L
Sbjct: 196 TLPGNKYGAKSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGL 255
Query: 645 IMAE 648
I E
Sbjct: 256 INVE 259
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 29/106 (27%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
D++APG + + + G +A L+GTSMATPH+AG AAL+KQ NPSW+ I
Sbjct: 191 DIVAPGVNVQSTY----------PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQI 240
Query: 628 ASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRA 673
+ + +TAT + ST+ +GSGLV+A A
Sbjct: 241 RNHLKNTAT------------------SLGSTNL-YGSGLVNAEAA 267
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 29/106 (27%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
D++APG + + + G +A L+GT MATPH+AG AAL+KQ NPSW+ I
Sbjct: 191 DIVAPGVNVQSTY----------PGSTYASLNGTXMATPHVAGAAALVKQKNPSWSNVQI 240
Query: 628 ASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRA 673
+ + +TAT + ST+ +GSGLV+A A
Sbjct: 241 RNHLKNTAT------------------SLGSTNL-YGSGLVNAEAA 267
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 229 SPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-VGTLADV 287
S D GHG+HVA T A +D L G+AP A + K + + G ++ +
Sbjct: 55 STQDGNGHGTHVAGTIA-------ALDNSIGVL--GVAPSAELYAVKVLGASGSGAISSI 105
Query: 288 IAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQG 344
++ A +G+ + LS+G P + + A GV VV A+GN+G
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSA-------TLEQAVNSATSRGVLVVAASGNEG 155
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 29/106 (27%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
D++APG + + + G +A L+GT MATPH+AG AAL+KQ NPSW+ I
Sbjct: 191 DIVAPGVNVQSTY----------PGSTYASLNGTXMATPHVAGAAALVKQKNPSWSNVQI 240
Query: 628 ASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRA 673
+ + +TAT + ST+ +GSGLV+A A
Sbjct: 241 RNHLKNTAT------------------SLGSTNL-YGSGLVNAEAA 267
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 23/142 (16%)
Query: 229 SPFDAVGHGSHVAST-AAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADV 287
S D GHG+HVA T AA N + V+ G+AP A + K + +
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGVL----------GVAPNAELYAVKVLGASGSGSVSS 104
Query: 288 IA-AIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPA 346
IA ++ A +G+ + LS+G P + + A GV VV A+GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPS-------ATLEQAVNSATSRGVLVVAASGNSGAG 157
Query: 347 PSTVVSY-SPWAVAAAACTTDR 367
+SY + +A A A TD+
Sbjct: 158 S---ISYPARYANAMAVGATDQ 176
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 14/85 (16%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
D++APG + + + G +A L+GT MATPH+AG AAL+KQ NPSW+ I
Sbjct: 191 DIVAPGVNVQSTY----------PGSTYASLNGTXMATPHVAGAAALVKQKNPSWSNVQI 240
Query: 628 ASAISSTATKYDN---YGQ-LIMAE 648
+ + +TAT + YG L+ AE
Sbjct: 241 RNHLKNTATSLGSTNLYGSGLVNAE 265
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 21/141 (14%)
Query: 229 SPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-VGTLADV 287
S D GHG+HVA T A +D L G+AP A + K + + G ++ +
Sbjct: 55 STQDGNGHGTHVAGTIA-------ALDNSIGVL--GVAPSAELYAVKVLGASGSGAISSI 105
Query: 288 IAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAP 347
++ A +G+ + LS+G P + + A GV VV A+GN G
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSA-------TLEQAVNSATSRGVLVVAASGNSGAGS 158
Query: 348 STVVSY-SPWAVAAAACTTDR 367
+SY + +A A A TD+
Sbjct: 159 ---ISYPARYANAMAVGATDQ 176
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 59/121 (48%), Gaps = 30/121 (24%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S RA FSS GP+ DV+APG I +
Sbjct: 166 IAVGAVDSSNQRA----SFSSVGPEL-------------DVMAPGVSICS---------- 198
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDN---YGQLI 645
L G + SGTSMA+PH+AG AALI +P+WT T + S++ +T TK N YG+ +
Sbjct: 199 TLPGNKYGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGNSFYYGKGL 258
Query: 646 M 646
+
Sbjct: 259 I 259
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 29/106 (27%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
D++APG + + + G +A L+GT MATPH+AG AAL+KQ NPSW+ I
Sbjct: 191 DIVAPGVNVQSTY----------PGSTYASLNGTXMATPHVAGAAALVKQKNPSWSNVQI 240
Query: 628 ASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRA 673
+ + +TAT + ST+ +GSGLV+A A
Sbjct: 241 RNHLKNTAT------------------SLGSTNL-YGSGLVNAEAA 267
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 53/109 (48%), Gaps = 27/109 (24%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S RA FSS GP+ DV+APG I +
Sbjct: 175 IAVGAVDSSNQRA----SFSSVGPEL-------------DVMAPGVSIXS---------- 207
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATK 637
L G + SGTSMA+PH+AG AALI +P+WT T + S++ +T TK
Sbjct: 208 TLPGNKYGAYSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTK 256
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 52/109 (47%), Gaps = 27/109 (24%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S RA FSS GP+ DV+APG I
Sbjct: 175 IAVGAVDSSNQRA----SFSSVGPEL-------------DVMAPGVSI----------QS 207
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATK 637
L G + SGTSMA+PH+AG AALI +P+WT T + S++ +T TK
Sbjct: 208 TLPGNKYGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTK 256
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 53/109 (48%), Gaps = 27/109 (24%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S RA FSS GP+ DV+APG I +
Sbjct: 175 IAVGAVDSSNQRA----SFSSVGPEL-------------DVMAPGVSICS---------- 207
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATK 637
L G + SGTSMA+PH+AG AALI +P+WT T + S++ +T TK
Sbjct: 208 TLPGNKYGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTK 256
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 60/124 (48%), Gaps = 31/124 (25%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S RA FSS GP+ DV+APG I +
Sbjct: 166 IAVGAVDSSNQRA----SFSSVGPEL-------------DVMAPGVSICS---------- 198
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDN---YGQ-L 644
L G + SGTSMA+PH+AG AALI +P+WT T + S++ +T TK + YG+ L
Sbjct: 199 TLPGNKYGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGL 258
Query: 645 IMAE 648
I E
Sbjct: 259 INVE 262
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 59/121 (48%), Gaps = 30/121 (24%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S RA FSS GP+ DV+APG I +
Sbjct: 175 IAVGAVDSSNQRA----SFSSVGPEL-------------DVMAPGVSICS---------- 207
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDN---YGQLI 645
L G + SGTSMA+PH+AG AALI +P+WT T + S++ +T TK + YG+ +
Sbjct: 208 TLPGNKYGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGL 267
Query: 646 M 646
+
Sbjct: 268 I 268
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 52/109 (47%), Gaps = 27/109 (24%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S RA FSS GP+ DV+APG I
Sbjct: 175 IAVGAVDSSNQRA----SFSSVGPEL-------------DVMAPGVSI----------QS 207
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATK 637
L G + +GTSMA+PH+AG AALI +P+WT T + S++ +T TK
Sbjct: 208 TLPGNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTK 256
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 52/109 (47%), Gaps = 27/109 (24%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S RA FSS GP+ DV+APG I
Sbjct: 175 IAVGAVDSSNQRA----SFSSVGPEL-------------DVMAPGVSI----------QS 207
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATK 637
L G + +GTSMA+PH+AG AALI +P+WT T + S++ +T TK
Sbjct: 208 TLPGNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTK 256
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 52/109 (47%), Gaps = 27/109 (24%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S RA FSS GP+ DV+APG I
Sbjct: 175 IAVGAVDSSNQRA----SFSSVGPEL-------------DVMAPGVSI----------QS 207
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATK 637
L G + +GTSMA+PH+AG AALI +P+WT T + S++ +T TK
Sbjct: 208 TLPGNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLQNTTTK 256
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 52/109 (47%), Gaps = 27/109 (24%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S RA FSS GP+ DV+APG I
Sbjct: 175 IAVGAVDSSNQRA----SFSSVGPEL-------------DVMAPGVSI----------QS 207
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATK 637
L G + +GTSMA+PH+AG AALI +P+WT T + S++ +T TK
Sbjct: 208 TLPGNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLQNTTTK 256
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 53/109 (48%), Gaps = 27/109 (24%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S RA FSS GP+ DV+APG I +
Sbjct: 175 IAVGAVDSSNQRA----SFSSVGPEL-------------DVMAPGVSIQS---------- 207
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATK 637
L G + +GTSMA+PH+AG AALI +P+WT T + S++ +T TK
Sbjct: 208 TLPGNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTK 256
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 51/109 (46%), Gaps = 27/109 (24%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S RA FSS GP+ DV+APG I
Sbjct: 175 IAVGAVDSSNQRA----SFSSVGPEL-------------DVMAPGVSI----------QS 207
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATK 637
L G + SGT MA+PH+AG AALI +P+WT T + S++ +T TK
Sbjct: 208 TLPGNKYGAYSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTK 256
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 51/109 (46%), Gaps = 27/109 (24%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S RA FSS GP+ DV+APG I
Sbjct: 175 IAVGAVDSSNQRA----SFSSVGPEL-------------DVMAPGVSI----------QS 207
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATK 637
L G + SGT MA+PH+AG AALI +P+WT T + S++ +T TK
Sbjct: 208 TLPGNKYGAYSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTK 256
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 62/145 (42%), Gaps = 46/145 (31%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S RA FSS GP+ DV+APG I +
Sbjct: 175 IAVGAVDSSNQRA----SFSSVGPEL-------------DVMAPGVSIXS---------- 207
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAE 648
L G + SGTSMA+PH+AG AALI +P+WT T + S++
Sbjct: 208 TLPGNKYGAYSGTSMASPHVAGAAALILSKHPNWTNTQVRSSL----------------- 250
Query: 649 GFEITSTYNSTHFDFGSGLVSATRA 673
E T+TY F +G GL++ A
Sbjct: 251 --ENTTTYLGDSFYYGKGLINVQAA 273
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 51/109 (46%), Gaps = 27/109 (24%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S RA FSS GP+ DV+APG I
Sbjct: 175 IAVGAVDSSNQRA----SFSSVGPEL-------------DVMAPGVSI----------QS 207
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATK 637
L G + SGT MA+PH+AG AALI +P+WT T + S++ +T TK
Sbjct: 208 TLPGNKYGAKSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTK 256
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 60/124 (48%), Gaps = 31/124 (25%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S RA FSS GP+ DV+APG I +
Sbjct: 166 IAVGAVDSSNQRA----SFSSVGPEL-------------DVMAPGVSIVS---------- 198
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDN---YGQ-L 644
L G + SGT+MA+PH+AG AALI +P+WT T + S++ +T TK + YG+ L
Sbjct: 199 TLPGNKYGAKSGTAMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGL 258
Query: 645 IMAE 648
I E
Sbjct: 259 INVE 262
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 53/109 (48%), Gaps = 27/109 (24%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S RA FSS GP+ DV+APG I +
Sbjct: 166 IAVGAVDSSNQRA----SFSSVGPEL-------------DVMAPGVSIVS---------- 198
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATK 637
L G + SGT+MA+PH+AG AALI +P+WT T + S++ +T TK
Sbjct: 199 TLPGNKYGAKSGTAMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTK 247
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 59/124 (47%), Gaps = 31/124 (25%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S RA FSS GP+ DV+APG I +
Sbjct: 166 IAVGAVDSSNQRA----SFSSVGPEL-------------DVMAPGVSICS---------- 198
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDN---YGQ-L 644
L G + SGT MA+PH+AG AALI +P+WT T + S++ +T TK + YG+ L
Sbjct: 199 TLPGNKYGAKSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGL 258
Query: 645 IMAE 648
I E
Sbjct: 259 INVE 262
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
D+ APG I +AW + L+GTSMATPH+AG+AAL + NPS TP +
Sbjct: 196 DLFAPGASIPSAW--------YTSDTATQTLNGTSMATPHVAGVAALYLEQNPSATPASV 247
Query: 628 ASAISSTAT 636
ASAI + AT
Sbjct: 248 ASAILNGAT 256
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 51/109 (46%), Gaps = 27/109 (24%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S RA FSS GP+ DV+APG I
Sbjct: 175 IAVGAVDSSNQRA----SFSSVGPEL-------------DVMAPGVSI----------QS 207
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATK 637
L G + +GT MA+PH+AG AALI +P+WT T + S++ +T TK
Sbjct: 208 TLPGNKYGAYNGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTK 256
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 51/109 (46%), Gaps = 27/109 (24%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S RA FSS GP+ DV+APG I
Sbjct: 175 IAVGAVDSSNQRA----SFSSVGPEL-------------DVMAPGVSI----------QS 207
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATK 637
L G + +GT MA+PH+AG AALI +P+WT T + S++ +T TK
Sbjct: 208 TLPGNKYGAYNGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTK 256
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 51/109 (46%), Gaps = 27/109 (24%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S RA FSS GP+ DV+APG I
Sbjct: 175 IAVGAVDSSNQRA----SFSSVGPEL-------------DVMAPGVSI----------QS 207
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATK 637
L G + +GTS A+PH+AG AALI +P+WT T + S++ +T TK
Sbjct: 208 TLPGNKYGAYNGTSXASPHVAGAAALILSKHPNWTNTQVRSSLENTTTK 256
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 82/206 (39%), Gaps = 62/206 (30%)
Query: 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCE--TGPRFPLS-SCNGKIVSARF 210
G GI I +DTG+N SHP N N+ C+ TG P++ SC
Sbjct: 25 GSGINIAVLDTGVNTSHPDLVN------NVEQ----CKDFTGATTPINNSCT-------- 66
Query: 211 FSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCAR 270
D GHG+HVA TA + G G + G+AP A
Sbjct: 67 ---------------------DRNGHGTHVAGTALADGGSDQA--GIY-----GVAPDAD 98
Query: 271 IAVYKAMYPTVGTLADVIA-----AIDQATMDGVD-ILTLSIGPDEPPRDTITMLGIFDV 324
+ YK + + +D IA A DQAT G I+++S+G +
Sbjct: 99 LWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANNS-------LISS 151
Query: 325 LMLFARRAGVFVVQAAGNQGPAPSTV 350
+ +A GV +V AAGN G + T+
Sbjct: 152 AVNYAYSKGVLIVAAAGNSGYSQGTI 177
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 21/115 (18%)
Query: 544 VSRFSSRGPDFT--DLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGT 601
V+ +SSRG T D D+ ++ APG +++ W + +SGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDI---EISAPGSSVYSTW----------YNGGYNTISGT 249
Query: 602 SMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYD---NYGQLI---MAEGF 650
SMATPH++G+AA I NPS + T + S + A D YG I A GF
Sbjct: 250 SMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDDYASGF 304
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 82/206 (39%), Gaps = 62/206 (30%)
Query: 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCE--TGPRFPLS-SCNGKIVSARF 210
G GI I +DTG+N SHP N N+ C+ TG P++ SC
Sbjct: 25 GSGINIAVLDTGVNTSHPDLVN------NVEQ----CKDFTGATTPINNSCT-------- 66
Query: 211 FSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCAR 270
D GHG+HVA TA + G G + G+AP A
Sbjct: 67 ---------------------DRNGHGTHVAGTALADGGSDQA--GIY-----GVAPDAD 98
Query: 271 IAVYKAMYPTVGTLADVIA-----AIDQATMDGVD-ILTLSIGPDEPPRDTITMLGIFDV 324
+ YK + + +D IA A DQAT G I+++S+G +
Sbjct: 99 LWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANNS-------LISS 151
Query: 325 LMLFARRAGVFVVQAAGNQGPAPSTV 350
+ +A GV +V AAGN G + T+
Sbjct: 152 AVNYAYSKGVLIVAAAGNSGYSQGTI 177
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 21/115 (18%)
Query: 544 VSRFSSRGPDFT--DLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGT 601
V+ +SSRG T D D+ ++ APG +++ W + +SGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDI---EISAPGSSVYSTW----------YNGGYNTISGT 249
Query: 602 SMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYD---NYGQLI---MAEGF 650
MATPH++G+AA I NPS + T + S + A D YG I A GF
Sbjct: 250 XMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDDYASGF 304
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 10/70 (14%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
D+ APG QI +AW + +SGTSMATPH+AG+AAL Q N TP +
Sbjct: 196 DLFAPGSQIKSAWYDGG----------YKTISGTSMATPHVAGVAALYLQENNGLTPLQL 245
Query: 628 ASAISSTATK 637
++S A++
Sbjct: 246 TGLLNSRASE 255
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
DV+APG I L G + +GTSMATPH+AG AALI +P+WT +
Sbjct: 197 DVMAPGVSI----------QSTLPGGTYGAYNGTSMATPHVAGAAALILSKHPTWTNAQV 246
Query: 628 ASAISSTAT 636
+ STAT
Sbjct: 247 RDRLESTAT 255
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 19/120 (15%)
Query: 232 DAVGHGSHVAST-AAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-VGTLADVIA 289
D HG+HVA T AA N + V+ G+AP A + K + T G + +I
Sbjct: 60 DGSSHGTHVAGTIAALNNSIGVL----------GVAPSASLYAVKVLDSTGSGQYSWIIN 109
Query: 290 AIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPST 349
I+ A + +D++ +S+G P + + + D A +G+ V AAGN+G + ST
Sbjct: 110 GIEWAISNNMDVINMSLGG---PTGSTALKTVVD----KAVSSGIVVAAAAGNEGSSGST 162
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 13/82 (15%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
DV+APG I L G + +GT MATPH+AG AALI +P+WT +
Sbjct: 197 DVMAPGVSI----------QSTLPGGTYGAYNGTXMATPHVAGAAALILSKHPTWTNAQV 246
Query: 628 ASAISSTATKYDN---YGQLIM 646
+ STAT N YG+ ++
Sbjct: 247 RDRLESTATYLGNSFYYGKGLI 268
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 19/120 (15%)
Query: 232 DAVGHGSHVAST-AAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-VGTLADVIA 289
D HG+HVA T AA N + V+ G+AP A + K + T G + +I
Sbjct: 60 DGSSHGTHVAGTIAALNNSIGVL----------GVAPSASLYAVKVLDSTGSGQYSWIIN 109
Query: 290 AIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPST 349
I+ A + +D++ +S+G P + + + D A +G+ V AAGN+G + ST
Sbjct: 110 GIEWAISNNMDVINMSLGG---PTGSTALKTVVD----KAVSSGIVVAAAAGNEGSSGST 162
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 13/82 (15%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
DV+APG I L G + +GT MATPH+AG AALI +P+WT +
Sbjct: 197 DVMAPGVSI----------QSTLPGGTYGAYNGTCMATPHVAGAAALILSKHPTWTNAQV 246
Query: 628 ASAISSTATKYDN---YGQLIM 646
+ STAT N YG+ ++
Sbjct: 247 RDRLESTATYLGNSFYYGKGLI 268
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 19/120 (15%)
Query: 232 DAVGHGSHVAST-AAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-VGTLADVIA 289
D HG+HVA T AA N + V+ G++P A + K + T G + +I
Sbjct: 60 DGSSHGTHVAGTIAALNNSIGVL----------GVSPSASLYAVKVLDSTGSGQYSWIIN 109
Query: 290 AIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPST 349
I+ A + +D++ +S+G P + + + D A +G+ V AAGN+G + ST
Sbjct: 110 GIEWAISNNMDVINMSLGG---PTGSTALKTVVD----KAVSSGIVVAAAAGNEGSSGST 162
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 74/203 (36%), Gaps = 55/203 (27%)
Query: 153 AGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFS 212
G GI I +DTG+N +HP +N N+ D G F +SC
Sbjct: 24 GGAGINIAVLDTGVNTNHPDLSN------NVEQCK-DFTVGTNFTDNSCT---------- 66
Query: 213 AGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIA 272
D GHG+HVA +A N G V G+AP A +
Sbjct: 67 -------------------DRQGHGTHVAGSALANGGTGSGV--------YGVAPEADLW 99
Query: 273 VYKAMYPTVGTLADVIA-----AIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLML 327
YK + AD IA A DQAT ++ IT +
Sbjct: 100 AYKVLGDDGSGYADDIAEAIRHAGDQATALNTKVVINMSLGSSGESSLITNA------VD 153
Query: 328 FARRAGVFVVQAAGNQGPAPSTV 350
+A GV ++ AAGN GP P ++
Sbjct: 154 YAYDKGVLIIAAAGNSGPKPGSI 176
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 15/98 (15%)
Query: 544 VSRFSSRGPDFT--DLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGT 601
V+ FSSRG T D DV ++ APG +++ W D +A +SGT
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDV---EISAPGAAVYSTW-----FD-----GGYATISGT 248
Query: 602 SMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYD 639
SMA+PH AG+AA I +P+ + + + + A+ D
Sbjct: 249 SMASPHAAGLAAKIWAQSPAASNVDVRGELQTRASVND 286
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 82/211 (38%), Gaps = 57/211 (27%)
Query: 140 PQGVWTQRGGDKNAGE-GIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPL 198
PQ +T D G G I +DTG++ +HP
Sbjct: 15 PQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDL------------------------- 49
Query: 199 SSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFF 258
+GK++ F ++ D P D HG+HVA AA
Sbjct: 50 ---DGKVIKGYDF---------VDNDYD---PMDLNNHGTHVAGIAAAETNNAT------ 88
Query: 259 YGLASGMAPCARIAVYKAMYPT-VGTLADVIAAIDQATMDGVDILTLSIGPDEPPRDTIT 317
G+A GMAP RI +A+ GTL+D+ AI A G +++ LS+G D T T
Sbjct: 89 -GIA-GMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCD---CHTTT 143
Query: 318 MLGIFDVLMLFARRAGVFVVQAAGNQGPAPS 348
+ + +A G VV AAGN G + +
Sbjct: 144 LENAVN----YAWNKGSVVVAAAGNNGSSTT 170
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 12/70 (17%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
DV+APG I VS +TG +A +SGTSMA+PH+AG+AAL+ + I
Sbjct: 202 DVVAPGVDI------VS----TITGNRYAYMSGTSMASPHVAGLAALLASQGRN--NIEI 249
Query: 628 ASAISSTATK 637
AI TA K
Sbjct: 250 RQAIEQTADK 259
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 10/69 (14%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
+V+APG +++ + P T +A L+GTSMA+PH+AG AALI +P+ + + +
Sbjct: 196 EVMAPGAGVYSTY-------PTNT---YATLNGTSMASPHVAGAAALILSKHPNLSASQV 245
Query: 628 ASAISSTAT 636
+ +SSTAT
Sbjct: 246 RNRLSSTAT 254
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 10/69 (14%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
+V+APG +++ + P T +A L+GTSMA+PH+AG AALI +P+ + + +
Sbjct: 196 EVMAPGAGVYSTY-------PTNT---YATLNGTSMASPHVAGAAALILSKHPNLSASQV 245
Query: 628 ASAISSTAT 636
+ +SSTAT
Sbjct: 246 RNRLSSTAT 254
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 10/69 (14%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
+V+APG +++ + P T +A L+GTSMA+PH+AG AALI +P+ + + +
Sbjct: 196 EVMAPGAGVYSTY-------PTNT---YATLNGTSMASPHVAGAAALILSKHPNLSASQV 245
Query: 628 ASAISSTAT 636
+ +SSTAT
Sbjct: 246 RNRLSSTAT 254
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 10/69 (14%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
+V+APG +++ + P T +A L+GTSMA+PH+AG AALI +P+ + + +
Sbjct: 197 EVMAPGAGVYSTY-------PTNT---YATLNGTSMASPHVAGAAALILSKHPNLSASQV 246
Query: 628 ASAISSTAT 636
+ +SSTAT
Sbjct: 247 RNRLSSTAT 255
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 10/69 (14%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
+V+APG +++ + P T +A L+GTSMA+PH+AG AALI +P+ + + +
Sbjct: 197 EVMAPGAGVYSTY-------PTNT---YATLNGTSMASPHVAGAAALILSKHPNLSASQV 246
Query: 628 ASAISSTAT 636
+ +SSTAT
Sbjct: 247 RNRLSSTAT 255
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 10/69 (14%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
+V+APG +++ + P T +A L+GTSMA+PH+AG AALI +P+ + + +
Sbjct: 196 EVMAPGAGVYSTY-------PTNT---YATLNGTSMASPHVAGAAALILSKHPNLSASQV 245
Query: 628 ASAISSTAT 636
+ +SSTAT
Sbjct: 246 RNRLSSTAT 254
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 138/343 (40%), Gaps = 94/343 (27%)
Query: 65 QTKRLMDSHDRIL---QSTLEIGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVE 121
T R++ S D+ L IG + +Y FK + V + KL+ P V+ VE
Sbjct: 4 NTIRVIVSVDKAKFNPHEVLGIGGH-IVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVE 61
Query: 122 RDRRAKLMTSYTPQFLG---------LPQG--------VWTQRGGDKNAGEGIVIGFVDT 164
D +A L+ P +LG +P G VW+ G + I + +DT
Sbjct: 62 FDHQAVLLGK--PSWLGGGSTQPAQTIPWGIERVKAPSVWSITDGSVSV---IQVAVLDT 116
Query: 165 GINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTS 224
G++ HP A NI+ + +S+ GK+ S
Sbjct: 117 GVDYDHPDLA------ANIA-----------WCVSTLRGKV------------------S 141
Query: 225 VDFLSPFDAVGHGSHVAST-AAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-VG 282
D GHG+HV T AA N + VV G+AP +I + + G
Sbjct: 142 TKLRDCADQNGHGTHVIGTIAALNNDIGVV----------GVAPGVQIYSVRVLDARGSG 191
Query: 283 TLADVIAAIDQATM--------DGVDILTLSIGPDEPPRDTITM-LG-------IFDVLM 326
+ +D+ I+QA + DG I+ PD+ + I+M LG ++D ++
Sbjct: 192 SYSDIAIGIEQAILGPDGVADKDGDGIIAGD--PDDAAAEVISMSLGGPADDSYLYD-MI 248
Query: 327 LFARRAGVFVVQAAGNQG-PAPSTVVSYSPWAVAAAACTTDRI 368
+ A AG+ +V A+GN+G P+PS +Y A + D I
Sbjct: 249 IQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNI 291
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 10/51 (19%)
Query: 566 KPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIK 616
+P+V APG I + + S + L GT+MATPH++G+ ALI+
Sbjct: 298 QPEVSAPGVDILSTYPDDS----------YETLMGTAMATPHVSGVVALIQ 338
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 138/343 (40%), Gaps = 94/343 (27%)
Query: 65 QTKRLMDSHDRIL---QSTLEIGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVE 121
T R++ S D+ L IG + +Y FK + V + KL+ P V+ VE
Sbjct: 4 NTIRVIVSVDKAKFNPHEVLGIGGH-IVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVE 61
Query: 122 RDRRAKLMTSYTPQFLG---------LPQG--------VWTQRGGDKNAGEGIVIGFVDT 164
D +A L+ P +LG +P G VW+ G + I + +DT
Sbjct: 62 FDHQAVLLGK--PSWLGGGSTQPAQTIPWGIERVKAPSVWSITDGSVSV---IQVAVLDT 116
Query: 165 GINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTS 224
G++ HP A NI+ + +S+ GK+ S
Sbjct: 117 GVDYDHPDLA------ANIA-----------WCVSTLRGKV------------------S 141
Query: 225 VDFLSPFDAVGHGSHVAST-AAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-VG 282
D GHG+HV T AA N + VV G+AP +I + + G
Sbjct: 142 TKLRDCADQNGHGTHVIGTIAALNNDIGVV----------GVAPGVQIYSVRVLDARGSG 191
Query: 283 TLADVIAAIDQATM--------DGVDILTLSIGPDEPPRDTITM-LG-------IFDVLM 326
+ +D+ I+QA + DG I+ PD+ + I+M LG ++D ++
Sbjct: 192 SYSDIAIGIEQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYD-MI 248
Query: 327 LFARRAGVFVVQAAGNQG-PAPSTVVSYSPWAVAAAACTTDRI 368
+ A AG+ +V A+GN+G P+PS +Y A + D I
Sbjct: 249 IQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNI 291
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 10/51 (19%)
Query: 566 KPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIK 616
+P+V APG I + + S + L GT+MATPH++G+ ALI+
Sbjct: 298 QPEVSAPGVDILSTYPDDS----------YETLMGTAMATPHVSGVVALIQ 338
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 138/343 (40%), Gaps = 94/343 (27%)
Query: 65 QTKRLMDSHDRIL---QSTLEIGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVE 121
T R++ S D+ L IG + +Y FK + V + KL+ P V+ VE
Sbjct: 4 NTIRVIVSVDKAKFNPHEVLGIGGH-IVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVE 61
Query: 122 RDRRAKLMTSYTPQFLG---------LPQG--------VWTQRGGDKNAGEGIVIGFVDT 164
D +A L+ P +LG +P G VW+ G + I + +DT
Sbjct: 62 FDHQAVLLGK--PSWLGGGSTQPAQTIPWGIERVKAPSVWSITDGSVSV---IQVAVLDT 116
Query: 165 GINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTS 224
G++ HP A NI+ + +S+ GK+ S
Sbjct: 117 GVDYDHPDLA------ANIA-----------WCVSTLRGKV------------------S 141
Query: 225 VDFLSPFDAVGHGSHVAST-AAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-VG 282
D GHG+HV T AA N + VV G+AP +I + + G
Sbjct: 142 TKLRDCADQNGHGTHVIGTIAALNNDIGVV----------GVAPGVQIYSVRVLDARGSG 191
Query: 283 TLADVIAAIDQATM--------DGVDILTLSIGPDEPPRDTITM-LG-------IFDVLM 326
+ +D+ I+QA + DG I+ PD+ + I+M LG ++D ++
Sbjct: 192 SYSDIAIGIEQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYD-MI 248
Query: 327 LFARRAGVFVVQAAGNQG-PAPSTVVSYSPWAVAAAACTTDRI 368
+ A AG+ +V A+GN+G P+PS +Y A + D I
Sbjct: 249 IQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNI 291
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 10/51 (19%)
Query: 566 KPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIK 616
+P+V APG I + + S + L GT+MATPH++G+ ALI+
Sbjct: 298 QPEVSAPGVDILSTYPDDS----------YETLMGTAMATPHVSGVVALIQ 338
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 138/343 (40%), Gaps = 94/343 (27%)
Query: 65 QTKRLMDSHDRIL---QSTLEIGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVE 121
T R++ S D+ L IG + +Y FK + V + KL+ P V+ VE
Sbjct: 1 NTIRVIVSVDKAKFNPHEVLGIGGH-IVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVE 58
Query: 122 RDRRAKLMTSYTPQFLG---------LPQG--------VWTQRGGDKNAGEGIVIGFVDT 164
D +A L+ P +LG +P G VW+ G + I + +DT
Sbjct: 59 FDHQAVLLGK--PSWLGGGSTQPAQTIPWGIERVKAPSVWSITDGSVSV---IQVAVLDT 113
Query: 165 GINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTS 224
G++ HP A NI+ + +S+ GK+ S
Sbjct: 114 GVDYDHPDLA------ANIA-----------WCVSTLRGKV------------------S 138
Query: 225 VDFLSPFDAVGHGSHVAST-AAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-VG 282
D GHG+HV T AA N + VV G+AP +I + + G
Sbjct: 139 TKLRDCADQNGHGTHVIGTIAALNNDIGVV----------GVAPGVQIYSVRVLDARGSG 188
Query: 283 TLADVIAAIDQATM--------DGVDILTLSIGPDEPPRDTITM-LG-------IFDVLM 326
+ +D+ I+QA + DG I+ PD+ + I+M LG ++D ++
Sbjct: 189 SYSDIAIGIEQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYD-MI 245
Query: 327 LFARRAGVFVVQAAGNQG-PAPSTVVSYSPWAVAAAACTTDRI 368
+ A AG+ +V A+GN+G P+PS +Y A + D I
Sbjct: 246 IQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNI 288
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 10/51 (19%)
Query: 566 KPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIK 616
+P+V APG I + + S + L GT+MATPH++G+ ALI+
Sbjct: 295 QPEVSAPGVDILSTYPDDS----------YETLMGTAMATPHVSGVVALIQ 335
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 10/70 (14%)
Query: 568 DVIAPGHQIWAAW-SPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTM 626
D+ APG I ++W + SA + +SGTSMA+PH+AG+AAL NP+ +P
Sbjct: 198 DIYAPGSSITSSWYTSNSATN---------TISGTSMASPHVAGVAALYLDENPNLSPAQ 248
Query: 627 IASAISSTAT 636
+ + + + AT
Sbjct: 249 VTNLLKTRAT 258
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 9/77 (11%)
Query: 544 VSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTG--CNFALLSGT 601
V++FSSRGP T R +KPDV+APG I +A S ++ +A + GT
Sbjct: 202 VAQFSSRGP--TKDGR-----IKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGT 254
Query: 602 SMATPHIAGIAALIKQH 618
SMATP +AG A +++H
Sbjct: 255 SMATPIVAGNVAQLREH 271
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 20/123 (16%)
Query: 232 DAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTL----ADV 287
D GHG+HVA + GN GMAP A + V++++ + G L +++
Sbjct: 64 DTNGHGTHVAGSVLGNGST-----------NKGMAPQANL-VFQSIMDSGGGLGGLPSNL 111
Query: 288 IAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAP 347
QA G I T S G T + D + R+ + ++ AAGN+GP
Sbjct: 112 QTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDD----YVRKNDMTILFAAGNEGPNG 167
Query: 348 STV 350
T+
Sbjct: 168 GTI 170
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 10/69 (14%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
+V+APG +++ + P T +A L+GT MA+PH+AG AALI +P+ + + +
Sbjct: 196 EVMAPGAGVYSTY-------PTNT---YATLNGTXMASPHVAGAAALILSKHPNLSASQV 245
Query: 628 ASAISSTAT 636
+ +SSTAT
Sbjct: 246 RNRLSSTAT 254
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 137/343 (39%), Gaps = 94/343 (27%)
Query: 65 QTKRLMDSHDRIL---QSTLEIGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVE 121
T R++ S D+ L IG + +Y FK + V + KL+ P V+ VE
Sbjct: 4 NTIRVIVSVDKAKFNPHEVLGIGGH-IVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVE 61
Query: 122 RDRRAKLMTSYTPQFLG---------LPQG--------VWTQRGGDKNAGEGIVIGFVDT 164
D +A L+ P +LG +P G VW+ G + I + +DT
Sbjct: 62 FDHQAVLLGK--PSWLGGGSTQPAQTIPWGIERVKAPSVWSITDGSVSV---IQVAVLDT 116
Query: 165 GINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTS 224
G++ HP A NI+ + +S+ GK+ S
Sbjct: 117 GVDYDHPDLA------ANIA-----------WCVSTLRGKV------------------S 141
Query: 225 VDFLSPFDAVGHGSHVAST-AAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-VG 282
D GHG+HV T AA N + VV G+AP +I + + G
Sbjct: 142 TKLRDCADQNGHGTHVIGTIAALNNDIGVV----------GVAPGVQIYSVRVLDARGSG 191
Query: 283 TLADVIAAIDQATM--------DGVDILTLSIGPDEPPRDTITM-LG-------IFDVLM 326
+ +D+ I+QA + DG I+ PD + I+M LG ++D ++
Sbjct: 192 SYSDIAIGIEQAILGPDGVADKDGDGIIAGD--PDADAAEVISMSLGGPADDSYLYD-MI 248
Query: 327 LFARRAGVFVVQAAGNQG-PAPSTVVSYSPWAVAAAACTTDRI 368
+ A AG+ +V A+GN+G P+PS +Y A + D I
Sbjct: 249 IQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNI 291
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 10/51 (19%)
Query: 566 KPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIK 616
+P+V APG I + + S + L GT+MATPH++G+ ALI+
Sbjct: 298 QPEVSAPGVDILSTYPDDS----------YETLMGTAMATPHVSGVVALIQ 338
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Query: 588 PMLTGCNFALLSGTSMATPHIAGIAAL----IKQHNPSWTPTMIASAISSTATKY----- 638
P T L +GTS A PH+AG AL +KQ N ++P I AIS TATK
Sbjct: 448 PQFTXSKSQLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYVDP 507
Query: 639 --DNYGQLIMAEGFE 651
+G L + + FE
Sbjct: 508 FAQGHGLLNVEKAFE 522
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 20/123 (16%)
Query: 236 HGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGT------LADVIA 289
HG+HV+S A+GN V G+AP A+I +G+ L
Sbjct: 272 HGTHVSSIASGNHSSRDV---------DGVAPNAKIVSXTIGDGRLGSXETGTALVRAXT 322
Query: 290 AIDQATMDG--VDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAP 347
+ + DG +D++ S G ++ I ++ + GV V +AGN GPA
Sbjct: 323 KVXELCRDGRRIDVINXSYGEHANWSNSGR---IGELXNEVVNKYGVVWVASAGNHGPAL 379
Query: 348 STV 350
TV
Sbjct: 380 CTV 382
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 27/109 (24%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I G V S + RA FSS G + +V+APG +++ + P
Sbjct: 174 IAVGAVDSNKNRA----SFSSVGSEL-------------EVMAPGVSVYSTY-------P 209
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATK 637
T + L+GTSMA+PH+AG AALI P+ + + + + +SSTAT
Sbjct: 210 SNT---YTSLNGTSMASPHVAGAAALILSKYPTLSASQVRNRLSSTATN 255
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 17/118 (14%)
Query: 232 DAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-VGTLADVIAA 290
D GHG+HVA T A V+ G+AP + K + + G+ + +++
Sbjct: 59 DGNGHGTHVAGTVAALDNTTGVL---------GVAPNVSLYAIKVLNSSGSGSYSAIVSG 109
Query: 291 IDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPS 348
I+ AT +G+D++ +S+G P + + D A +G+ VV AAGN G + S
Sbjct: 110 IEWATQNGLDVINMSLG---GPSGSTALKQAVD----KAYASGIVVVAAAGNSGNSGS 160
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 12/70 (17%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
DV APG I++ + P T +A LSGTSMATPH+AG+A L+ S + I
Sbjct: 201 DVAAPGSSIYSTY-------PTST---YASLSGTSMATPHVAGVAGLLASQGRS--ASNI 248
Query: 628 ASAISSTATK 637
+AI +TA K
Sbjct: 249 RAAIENTADK 258
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 63/178 (35%), Gaps = 57/178 (32%)
Query: 132 YTPQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCE 191
Y PQ + PQ W D G G I VDTG+ +HP A
Sbjct: 13 YGPQKIQAPQ-AW-----DIAEGSGAKIAIVDTGVQSNHPDLA----------------- 49
Query: 192 TGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLS-PFDAVGHGSHVASTAAGNAGV 250
GK+V F VD S P + GHG+H AG+
Sbjct: 50 -----------GKVVGGWDF-------------VDNDSTPQNGNGHGTHC-------AGI 78
Query: 251 PVVVDGFFYGLASGMAPCARIAVYKAMYPT-VGTLADVIAAIDQATMDGVDILTLSIG 307
V G+A G AP A I + + + GT V I A G +++LS+G
Sbjct: 79 AAAVTNNSTGIA-GTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLG 135
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 26/133 (19%)
Query: 544 VSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSM 603
+SRFSS G L+ + +KPD+ APG I ++ + +A LSGTSM
Sbjct: 375 LSRFSSWG-----LTADGN--IKPDIAAPGQDILSS----------VANNKYAKLSGTSM 417
Query: 604 ATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHF-- 661
+ P +AGI L+++ + P M S A K ++M+ + +F
Sbjct: 418 SAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKK------VLMSSATALYDEDEKAYFSP 471
Query: 662 -DFGSGLVSATRA 673
G+G V A +A
Sbjct: 472 RQQGAGAVDAKKA 484
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 12/70 (17%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
DV APG I++ + P T +A LSGTSMATPH+AG+A L+ S + I
Sbjct: 201 DVAAPGSWIYSTY-------PTST---YASLSGTSMATPHVAGVAGLLASQGRS--ASNI 248
Query: 628 ASAISSTATK 637
+AI +TA K
Sbjct: 249 RAAIENTADK 258
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 63/178 (35%), Gaps = 57/178 (32%)
Query: 132 YTPQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCE 191
Y PQ + PQ W D G G I VDTG+ +HP A
Sbjct: 13 YGPQKIQAPQ-AW-----DIAEGSGAKIAIVDTGVQSNHPDLA----------------- 49
Query: 192 TGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLS-PFDAVGHGSHVASTAAGNAGV 250
GK+V F VD S P + GHG+H AG+
Sbjct: 50 -----------GKVVGGWDF-------------VDNDSTPQNGNGHGTHC-------AGI 78
Query: 251 PVVVDGFFYGLASGMAPCARIAVYKAMYPT-VGTLADVIAAIDQATMDGVDILTLSIG 307
V G+A G AP A I + + + GT V I A G +++LS+G
Sbjct: 79 AAAVTNNSTGIA-GTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLG 135
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 544 VSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTG--CNFALLSGT 601
V++FSSRGP T R +KPDV+APG I +A S ++ +A GT
Sbjct: 202 VAQFSSRGP--TKDGR-----IKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYXGGT 254
Query: 602 SMATPHIAGIAALIKQH 618
S ATP +AG A +++H
Sbjct: 255 SXATPIVAGNVAQLREH 271
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 20/123 (16%)
Query: 232 DAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTL----ADV 287
D GHG+HVA + GN GMAP A + V++++ + G L +++
Sbjct: 64 DTNGHGTHVAGSVLGNGST-----------NKGMAPQANL-VFQSIMDSGGGLGGLPSNL 111
Query: 288 IAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAP 347
QA G I T S G T + D + R+ + ++ AAGN+GP
Sbjct: 112 QTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDD----YVRKNDMTILFAAGNEGPNG 167
Query: 348 STV 350
T+
Sbjct: 168 GTI 170
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 588 PMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYG 642
P G + GTSMA PH+ G+ A++ Q P+ P I + +TA ++ G
Sbjct: 367 PATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG 421
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 31/42 (73%)
Query: 594 NFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTA 635
++ +GTSMATPH++G+A L+ ++P + + + +A+++TA
Sbjct: 361 DYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATA 402
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 595 FALLSGTSMATPHIAGIAALI----KQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGF 650
++ ++GTSMATPH++G+AAL+ N + TP + + ST + ++ G+L A G
Sbjct: 269 YSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFN--GRLDRALGS 326
Query: 651 EI 652
I
Sbjct: 327 GI 328
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 595 FALLSGTSMATPHIAGIAALI----KQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGF 650
++ ++GTSMATPH++G+AAL+ N + TP + + ST + ++ G+L A G
Sbjct: 269 YSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFN--GRLDRALGS 326
Query: 651 EI 652
I
Sbjct: 327 GI 328
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALI----KQHNPSWT 623
D+ APG I S V + ++ ++GTSMATPH++G+AAL+ N + T
Sbjct: 245 DLAAPGQDIL---STVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLT 301
Query: 624 PTMIASAISSTATKYDNYGQLIMAEGFEI 652
P + + ST + ++ G+L A G I
Sbjct: 302 PAELKDVLVSTTSPFN--GRLDRALGSGI 328
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 17/94 (18%)
Query: 544 VSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSM 603
+SRFSS G L+ + +KPD+ APG I ++ + +A LSGTS
Sbjct: 366 LSRFSSWG-----LTADGN--IKPDIAAPGQDILSS----------VANNKYAKLSGTSX 408
Query: 604 ATPHIAGIAALIKQHNPSWTPTMIASAISSTATK 637
+ P +AGI L+++ + P S A K
Sbjct: 409 SAPLVAGIXGLLQKQYETQYPDXTPSERLDLAKK 442
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 10/48 (20%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALI 615
D+ APG I + W G +SGTSMATPHIAG+AA +
Sbjct: 201 DIFAPGTSITSTW----------IGGRTNTISGTSMATPHIAGLAAYL 238
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 17/75 (22%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
D+ PG I + W G + +SGTSMATPH+AG+AA + + T
Sbjct: 200 DIFGPGTDILSTW----------IGGSTRSISGTSMATPHVAGLAAYLM----TLGKTTA 245
Query: 628 ASA---ISSTATKYD 639
ASA I+ TA K D
Sbjct: 246 ASACRYIADTANKGD 260
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 150 DKNAGEGIVIGFVDTGINPSHPSF 173
D++AG+G + +DTGI SHP F
Sbjct: 26 DESAGQGSCVYVIDTGIEASHPEF 49
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 17/75 (22%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
D+ PG I + W G + +SGTSMATPH+AG+AA + + T
Sbjct: 200 DIFGPGTSILSTW----------IGGSTRSISGTSMATPHVAGLAAYLM----TLGKTTA 245
Query: 628 ASA---ISSTATKYD 639
ASA I+ TA K D
Sbjct: 246 ASACRYIADTANKGD 260
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 150 DKNAGEGIVIGFVDTGINPSHPSF 173
D++AG+G + +DTGI SHP F
Sbjct: 26 DESAGQGSCVYVIDTGIEASHPEF 49
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 17/75 (22%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
D+ PG I + W G + +SGTSMATPH+AG+AA + + T
Sbjct: 200 DIFGPGTSILSTW----------IGGSTRSISGTSMATPHVAGLAAYLM----TLGKTTA 245
Query: 628 ASA---ISSTATKYD 639
ASA I+ TA K D
Sbjct: 246 ASACRYIADTANKGD 260
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 150 DKNAGEGIVIGFVDTGINPSHPSF 173
D++AG+G + +DTGI SHP F
Sbjct: 26 DESAGQGSCVYVIDTGIEASHPEF 49
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 16/69 (23%)
Query: 547 FSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATP 606
F R DFT+ + + D++APG I + + LD +A LSGT+MA P
Sbjct: 211 FDLRLSDFTNTNE------EIDIVAPGVGIKSTY-----LD-----SGYAELSGTAMAAP 254
Query: 607 HIAGIAALI 615
H+AG ALI
Sbjct: 255 HVAGALALI 263
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 83/210 (39%), Gaps = 65/210 (30%)
Query: 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCN 202
VW R K AG+ +IG +DTG HP A N++ G ET
Sbjct: 33 VW--RASAKGAGQ--IIGVIDTGXQVDHPDLAERIIGGVNLTTDYGGDETN--------- 79
Query: 203 GKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVAST-AAGNAGVPVVVDGFFYGL 261
FS D GHG+HVA T AA G VV
Sbjct: 80 --------FS-------------------DNNGHGTHVAGTVAAAETGSGVV-------- 104
Query: 262 ASGMAPCARIAVYKAM----YPTVGTLADVIA-AIDQATMDG--VDILTLSIGPDEPPRD 314
G+AP A + + KA+ +G +A I A+D G + I+T+S+G P D
Sbjct: 105 --GVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLG---GPTD 159
Query: 315 TITMLGIFDVLMLFARRAGVFVVQAAGNQG 344
+ + D + +A V VV AAGN+G
Sbjct: 160 SEEL---HDAVK-YAVSNNVSVVXAAGNEG 185
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 32/156 (20%)
Query: 232 DAVGHGSHVAST-AAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-VGTLADVIA 289
D GHG+HV T AA N + VV G+AP +I + + G+ +D+
Sbjct: 69 DQNGHGTHVIGTIAALNNDIGVV----------GVAPGVQIYSVRVLDARGSGSYSDIAI 118
Query: 290 AIDQATM--------DGVDILTLSIGPDEPPRDTITM-LG-------IFDVLMLFARRAG 333
I+QA + DG I+ PD+ + I+M LG ++D +++ A AG
Sbjct: 119 GIEQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYD-MIIQAYNAG 175
Query: 334 VFVVQAAGNQG-PAPSTVVSYSPWAVAAAACTTDRI 368
+ +V A+GN+G P+PS +Y A + D I
Sbjct: 176 IVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNI 211
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 566 KPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIK 616
+P+V APG I + + S + L GT MATPH++G+ ALI+
Sbjct: 218 QPEVSAPGVDILSTYPDDS----------YETLMGTXMATPHVSGVVALIQ 258
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 16/69 (23%)
Query: 547 FSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATP 606
F R DFT+ + + D++APG I + + LD +A LSGT+MA P
Sbjct: 211 FDLRLSDFTNTNE------EIDIVAPGVGIKSTY-----LD-----SGYAELSGTAMAAP 254
Query: 607 HIAGIAALI 615
H+AG ALI
Sbjct: 255 HVAGALALI 263
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 83/210 (39%), Gaps = 65/210 (30%)
Query: 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCN 202
VW R K AG+ +IG +DTG HP A N++ G ET
Sbjct: 33 VW--RASAKGAGQ--IIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETN--------- 79
Query: 203 GKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVAST-AAGNAGVPVVVDGFFYGL 261
FS D GHG+HVA T AA G VV
Sbjct: 80 --------FS-------------------DNNGHGTHVAGTVAAAETGSGVV-------- 104
Query: 262 ASGMAPCARIAVYKAM----YPTVGTLADVIA-AIDQATMDG--VDILTLSIGPDEPPRD 314
G+AP A + + KA+ +G +A I A+D G + I+T+S+G P D
Sbjct: 105 --GVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLG---GPTD 159
Query: 315 TITMLGIFDVLMLFARRAGVFVVQAAGNQG 344
+ + D + +A V VV AAGN+G
Sbjct: 160 SEEL---HDAVK-YAVSNNVSVVXAAGNEG 185
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 16/69 (23%)
Query: 547 FSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATP 606
F R DFT+ + + D++APG I + + LD +A LSGT+MA P
Sbjct: 211 FDLRLSDFTNTNE------EIDIVAPGVGIKSTY-----LD-----SGYAELSGTAMAAP 254
Query: 607 HIAGIAALI 615
H+AG ALI
Sbjct: 255 HVAGALALI 263
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 83/210 (39%), Gaps = 65/210 (30%)
Query: 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCN 202
VW R K AG+ +IG +DTG HP A N++ G ET
Sbjct: 33 VW--RASAKGAGQ--IIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETN--------- 79
Query: 203 GKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVAST-AAGNAGVPVVVDGFFYGL 261
FS D GHG+HVA T AA G VV
Sbjct: 80 --------FS-------------------DNNGHGTHVAGTVAAAETGSGVV-------- 104
Query: 262 ASGMAPCARIAVYKAM----YPTVGTLADVIA-AIDQATMDG--VDILTLSIGPDEPPRD 314
G+AP A + + KA+ +G +A I A+D G + I+T+S+G P D
Sbjct: 105 --GVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLG---GPTD 159
Query: 315 TITMLGIFDVLMLFARRAGVFVVQAAGNQG 344
+ + D + +A V VV AAGN+G
Sbjct: 160 SEEL---HDAVK-YAVSNNVSVVCAAGNEG 185
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 32/156 (20%)
Query: 232 DAVGHGSHVAST-AAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-VGTLADVIA 289
D GHG+HV T AA N + VV G+AP +I + + G+ +D+
Sbjct: 69 DQNGHGTHVIGTIAALNNDIGVV----------GVAPGVQIYSVRVLDARGSGSYSDIAI 118
Query: 290 AIDQATM--------DGVDILTLSIGPDEPPRDTITM-LG-------IFDVLMLFARRAG 333
I+QA + DG I+ PD+ + I+M LG ++D +++ A AG
Sbjct: 119 GIEQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYD-MIIQAYNAG 175
Query: 334 VFVVQAAGNQG-PAPSTVVSYSPWAVAAAACTTDRI 368
+ +V A+GN+G P+PS +Y A + D I
Sbjct: 176 IVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNI 211
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 10/51 (19%)
Query: 566 KPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIK 616
+P+V APG I + + S + L GT+MATPH++G+ ALI+
Sbjct: 218 QPEVSAPGVDILSTYPDDS----------YETLMGTAMATPHVSGVVALIQ 258
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 32/156 (20%)
Query: 232 DAVGHGSHVAST-AAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-VGTLADVIA 289
D GHG+HV T AA N + VV G+AP +I + + G+ +D+
Sbjct: 71 DQNGHGTHVIGTIAALNNDIGVV----------GVAPGVQIYSVRVLDARGSGSYSDIAI 120
Query: 290 AIDQATM--------DGVDILTLSIGPDEPPRDTITM-LG-------IFDVLMLFARRAG 333
I+QA + DG I+ PD+ + I+M LG ++D +++ A AG
Sbjct: 121 GIEQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYD-MIIQAYNAG 177
Query: 334 VFVVQAAGNQG-PAPSTVVSYSPWAVAAAACTTDRI 368
+ +V A+GN+G P+PS +Y A + D I
Sbjct: 178 IVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNI 213
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 10/51 (19%)
Query: 566 KPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIK 616
+P+V APG I + + S + L GT+MATPH++G+ ALI+
Sbjct: 220 QPEVSAPGVDILSTYPDDS----------YETLMGTAMATPHVSGVVALIQ 260
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 16/69 (23%)
Query: 547 FSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATP 606
F R DFT+ + + D++APG I + + LD +A LSGT+MA P
Sbjct: 193 FDLRLSDFTNTNE------EIDIVAPGVGIKSTY-----LD-----SGYAELSGTAMAAP 236
Query: 607 HIAGIAALI 615
H+AG ALI
Sbjct: 237 HVAGALALI 245
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 83/210 (39%), Gaps = 65/210 (30%)
Query: 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCN 202
VW R K AG+ +IG +DTG HP A N++ G ET
Sbjct: 15 VW--RASAKGAGQ--IIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETN--------- 61
Query: 203 GKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVAST-AAGNAGVPVVVDGFFYGL 261
FS D GHG+HVA T AA G VV
Sbjct: 62 --------FS-------------------DNNGHGTHVAGTVAAAETGSGVV-------- 86
Query: 262 ASGMAPCARIAVYKAM----YPTVGTLADVIA-AIDQATMDG--VDILTLSIGPDEPPRD 314
G+AP A + + KA+ +G +A I A+D G + I+T+S+G P D
Sbjct: 87 --GVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLG---GPTD 141
Query: 315 TITMLGIFDVLMLFARRAGVFVVQAAGNQG 344
+ + D + +A V VV AAGN+G
Sbjct: 142 SEEL---HDAVK-YAVSNNVSVVCAAGNEG 167
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 32/156 (20%)
Query: 232 DAVGHGSHVAST-AAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-VGTLADVIA 289
D GHG+HV T AA N + VV G+AP +I + + G+ +D+
Sbjct: 69 DQNGHGTHVIGTIAALNNDIGVV----------GVAPGVQIYSVRVLDARGSGSYSDIAI 118
Query: 290 AIDQATM--------DGVDILTLSIGPDEPPRDTITM-LG-------IFDVLMLFARRAG 333
I+QA + DG I+ PD+ + I+M LG ++D +++ A AG
Sbjct: 119 GIEQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYD-MIIQAYNAG 175
Query: 334 VFVVQAAGNQG-PAPSTVVSYSPWAVAAAACTTDRI 368
+ +V A+GN+G P+PS +Y A + D I
Sbjct: 176 IVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNI 211
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 566 KPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIK 616
+P+V APG I + + S + L GT MATPH++G+ ALI+
Sbjct: 218 QPEVSAPGVDILSTYPDDS----------YETLMGTCMATPHVSGVVALIQ 258
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 32/156 (20%)
Query: 232 DAVGHGSHVAST-AAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-VGTLADVIA 289
D GHG+HV T AA N + VV G+AP +I + + G+ +D+
Sbjct: 80 DQNGHGTHVIGTIAALNNDIGVV----------GVAPGVQIYSVRVLDARGSGSYSDIAI 129
Query: 290 AIDQATM--------DGVDILTLSIGPDEPPRDTITM-LG-------IFDVLMLFARRAG 333
I+QA + DG I+ PD+ + I+M LG ++D +++ A AG
Sbjct: 130 GIEQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYD-MIIQAYNAG 186
Query: 334 VFVVQAAGNQG-PAPSTVVSYSPWAVAAAACTTDRI 368
+ +V A+GN+G P+PS +Y A + D I
Sbjct: 187 IVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNI 222
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 10/51 (19%)
Query: 566 KPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIK 616
+P+V APG I + + S + L GT+MATPH++G+ ALI+
Sbjct: 229 QPEVSAPGVDILSTYPDDS----------YETLMGTAMATPHVSGVVALIQ 269
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALI 615
D+ APG I + W G +SGTSMATPHI G+ A +
Sbjct: 203 DIFAPGSNILSTW----------IGGTTNTISGTSMATPHIVGLGAYL 240
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 32/156 (20%)
Query: 232 DAVGHGSHVAST-AAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-VGTLADVIA 289
D GHG+HV T AA N + VV G+AP +I + + G+ +D+
Sbjct: 80 DQNGHGTHVIGTIAALNNDIGVV----------GVAPGVQIYSVRVLDARGSGSYSDIAI 129
Query: 290 AIDQATM--------DGVDILTLSIGPDEPPRDTITM-LG-------IFDVLMLFARRAG 333
I QA + DG I+ PD+ + I+M LG ++D +++ A AG
Sbjct: 130 GIAQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYD-MIIQAYNAG 186
Query: 334 VFVVQAAGNQG-PAPSTVVSYSPWAVAAAACTTDRI 368
+ +V A+GN+G P+PS +Y A + D I
Sbjct: 187 IVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNI 222
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 10/51 (19%)
Query: 566 KPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIK 616
+P+V APG I + + S + L GT+MATPH++G+ ALI+
Sbjct: 229 QPEVSAPGVDILSTYPDDS----------YETLMGTAMATPHVSGVVALIQ 269
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 15/82 (18%)
Query: 595 FALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITS 654
+ + +GTSMA PH++G+AAL+ S T+ S +S + TS
Sbjct: 270 YGMKAGTSMAAPHVSGVAALVISAANSIGKTLTPSELSDILVR--------------TTS 315
Query: 655 TYNST-HFDFGSGLVSATRALD 675
+N GSG+V A A++
Sbjct: 316 RFNGRLDRGLGSGIVDANAAVN 337
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 15/82 (18%)
Query: 595 FALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITS 654
+ + +GTSMA PH++G+AAL+ S T+ S +S + TS
Sbjct: 270 YGMKAGTSMAAPHVSGVAALVISAANSIGKTLTPSELSDILVR--------------TTS 315
Query: 655 TYNST-HFDFGSGLVSATRALD 675
+N GSG+V A A++
Sbjct: 316 RFNGRLDRGLGSGIVDANAAVN 337
>pdb|3SZA|A Chain A, Crystal Structure Of Human Aldh3a1 - Apo Form
pdb|3SZA|B Chain B, Crystal Structure Of Human Aldh3a1 - Apo Form
pdb|3SZB|A Chain A, Crystal Structure Of Human Aldh3a1 Modified With The
Beta-Elimination Product Of Aldi-1; 1-Phenyl-
2-Propen-1-One
pdb|3SZB|B Chain B, Crystal Structure Of Human Aldh3a1 Modified With The
Beta-Elimination Product Of Aldi-1; 1-Phenyl-
2-Propen-1-One
Length = 469
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 697 SDPVSIKAATGIWCNHSLSHPANLNL-PSVTVSAVAKSLILQRSLKNVGNKTETYLTSVV 755
S+P+ + G W ++P NL + P V A +++L+ S + + L +++
Sbjct: 118 SEPLGVVLVIGTW-----NYPFNLTIQPMVGAIAAGNAVVLKPS--ELSENMASLLATII 170
Query: 756 HPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQAIGDFSFGEIVLTGSLNHIVRIPLSV 813
P LYP P+ T+ L +F+ G G+I++T + H+ + L +
Sbjct: 171 -PQYLDKDLYPVINGGVPETTELLKERFDHILYTGSTGVGKIIMTAAAKHLTPVTLEL 227
>pdb|1TON|A Chain A, Rat Submaxillary Gland Serine Protease, Tonin. Structure
Solution And Refinement At 1.8 Angstroms Resolution
Length = 235
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 243 TAAGNAGVPVVVDGFFYGLASGMA-PCAR 270
T AG++G P++ DG G+ SG A PCA+
Sbjct: 182 TCAGDSGGPLICDGVLQGITSGGATPCAK 210
>pdb|4E7N|A Chain A, Crystal Structure Of Ahv_tl-I, A Glycosylated Snake-Venom
Thrombin- Like Enzyme From Agkistrodon Halys
Length = 238
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 243 TAAGNAGVPVVVDGFFYGLAS-GMAPCA---RIAVYKAMYPTVGTLADVIAAIDQAT 295
T G++G P++ +G F G+AS G PCA + A Y ++ + + ++IA A+
Sbjct: 179 TCKGDSGGPLICNGQFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENIIAGNTDAS 235
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 17/112 (15%)
Query: 236 HGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCAR---IAVYKAMYPTVGTLADVIAAID 292
HG+HVAS G PV +G+AP R + V+ + L D+ AI+
Sbjct: 64 HGTHVASIIFGQHDSPV----------TGIAPQCRGLIVPVFADESLKLSQL-DLSRAIE 112
Query: 293 QATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQG 344
QA +G +I+ +S G + T L + + + V ++ A GN G
Sbjct: 113 QAVNNGANIINVSAGQLTDAGEADTWL---EKAIQLCQENNVLLIAATGNDG 161
>pdb|4AHC|A Chain A, Crystal Structure Of An Evolved Replicating Dna Polymerase
pdb|4AHC|B Chain B, Crystal Structure Of An Evolved Replicating Dna Polymerase
pdb|4AIL|C Chain C, Crystal Structure Of An Evolved Replicating Dna Polymerase
Length = 775
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 5/106 (4%)
Query: 629 SAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALDPGLVLSVEFEDYI 688
+SS + ++I + +I TYN FDF A RA G+ L++ +
Sbjct: 182 EVVSSEREMIKRFLRIIREKDPDIIVTYNGDSFDFP---YLAKRAEKLGIKLTIGRDGSE 238
Query: 689 SFLCSLADSDPVSIKAATGIWCNHSLSHPANLNLPSVTVSAVAKSL 734
+ + D V +K H ++ +NLP+ T+ AV +++
Sbjct: 239 PKMQRIGDMTAVEVKGRIHFDLYHVITR--TINLPTYTLEAVYEAI 282
>pdb|1P8J|A Chain A, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|B Chain B, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|C Chain C, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|D Chain D, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|E Chain E, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|F Chain F, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|G Chain G, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|H Chain H, Crystal Structure Of The Proprotein Convertase Furin
Length = 471
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 154 GEGIVIGFVDTGINPSHPSFA-NYNP 178
G GIV+ +D GI +HP A NY+P
Sbjct: 37 GHGIVVSILDDGIEKNHPDLAGNYDP 62
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 593 CNF-ALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMA---- 647
C++ +++GTS ATP +G AL+ P + + ++ +AT+ D Q +M
Sbjct: 326 CDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVMVSYTS 385
Query: 648 -----------EGFEITSTYNSTHFDFGSGLVSATRALD 675
EG+E + +G GL+ +AL+
Sbjct: 386 STGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALE 424
>pdb|1ZVJ|A Chain A, Structure Of Kumamolisin-As Mutant, D164n
Length = 364
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 261 LASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLG 320
+A +AP A+ AVY A G L + AI T+ ++++S G P D+ T
Sbjct: 85 VAGALAPGAKFAVYFAPNTDAGFLDAITTAIHDPTLK-PSVVSISWG---GPEDSWTSAA 140
Query: 321 I--FDVLMLFARRAGVFVVQAAGNQG 344
I + L A GV V+ AAGN G
Sbjct: 141 IAAMNRAFLDAAALGVTVLAAAGNSG 166
>pdb|1ZVK|A Chain A, Structure Of Double Mutant, D164n, E78h Of Kumamolisin-as
pdb|1ZVK|B Chain B, Structure Of Double Mutant, D164n, E78h Of Kumamolisin-as
Length = 358
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 261 LASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLG 320
+A +AP A+ AVY A G L + AI T+ ++++S G P D+ T
Sbjct: 85 VAGALAPGAKFAVYFAPNTDAGFLDAITTAIHDPTLK-PSVVSISWG---GPEDSWTSAA 140
Query: 321 I--FDVLMLFARRAGVFVVQAAGNQG 344
I + L A GV V+ AAGN G
Sbjct: 141 IAAMNRAFLDAAALGVTVLAAAGNSG 166
>pdb|1NPM|A Chain A, Neuropsin, A Serine Protease Expressed In The Limbic
System Of Mouse Brain
pdb|1NPM|B Chain B, Neuropsin, A Serine Protease Expressed In The Limbic
System Of Mouse Brain
Length = 225
Score = 30.0 bits (66), Expect = 5.4, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 238 SHVASTAAGNAGVPVVVDGFFYGLAS-GMAPCAR 270
S+ A T G++G P+V DG G+ S G PC +
Sbjct: 170 SNGADTCQGDSGGPLVCDGMLQGITSWGSDPCGK 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,384,216
Number of Sequences: 62578
Number of extensions: 986128
Number of successful extensions: 2839
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2422
Number of HSP's gapped (non-prelim): 339
length of query: 819
length of database: 14,973,337
effective HSP length: 107
effective length of query: 712
effective length of database: 8,277,491
effective search space: 5893573592
effective search space used: 5893573592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)