Query 003446
Match_columns 819
No_of_seqs 501 out of 3044
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 23:34:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003446.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003446hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 3.3E-51 7.1E-56 443.8 29.3 231 126-362 1-233 (307)
2 PTZ00262 subtilisin-like prote 100.0 5.1E-50 1.1E-54 449.8 21.5 162 151-347 312-477 (639)
3 cd07497 Peptidases_S8_14 Pepti 100.0 2.2E-48 4.8E-53 417.6 22.6 290 154-635 1-311 (311)
4 cd07479 Peptidases_S8_SKI-1_li 100.0 5.4E-48 1.2E-52 405.9 21.4 244 151-639 4-254 (255)
5 cd07478 Peptidases_S8_CspA-lik 100.0 1.1E-47 2.4E-52 432.7 24.2 430 152-666 1-455 (455)
6 cd05562 Peptidases_S53_like Pe 100.0 9.6E-48 2.1E-52 406.8 21.5 271 151-675 1-274 (275)
7 cd07475 Peptidases_S8_C5a_Pept 100.0 1.2E-46 2.7E-51 415.6 26.0 314 143-675 2-346 (346)
8 cd07489 Peptidases_S8_5 Peptid 100.0 1.3E-45 2.8E-50 401.2 24.9 295 143-681 5-304 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 1.7E-45 3.7E-50 388.7 22.3 249 143-642 2-256 (267)
10 cd07483 Peptidases_S8_Subtilis 100.0 2.7E-45 5.8E-50 393.3 23.5 267 155-636 1-291 (291)
11 cd07474 Peptidases_S8_subtilis 100.0 1.6E-44 3.4E-49 390.2 26.8 288 154-673 1-295 (295)
12 KOG1153 Subtilisin-related pro 100.0 1.9E-45 4.1E-50 384.2 18.2 336 28-636 76-461 (501)
13 cd05561 Peptidases_S8_4 Peptid 100.0 5.9E-45 1.3E-49 379.3 21.5 226 157-642 1-231 (239)
14 cd07493 Peptidases_S8_9 Peptid 100.0 3.6E-44 7.8E-49 379.9 23.9 246 156-636 1-261 (261)
15 cd07481 Peptidases_S8_Bacillop 100.0 6.6E-44 1.4E-48 378.4 23.9 247 154-636 1-264 (264)
16 cd04857 Peptidases_S8_Tripepti 100.0 8.1E-43 1.7E-47 380.9 25.3 220 231-638 182-412 (412)
17 cd07487 Peptidases_S8_1 Peptid 100.0 1.1E-42 2.3E-47 369.8 23.9 257 154-636 1-264 (264)
18 cd07494 Peptidases_S8_10 Pepti 100.0 3.3E-42 7.1E-47 369.1 24.6 162 136-365 7-174 (298)
19 cd07485 Peptidases_S8_Fervidol 100.0 5.6E-42 1.2E-46 365.4 23.7 260 143-634 2-273 (273)
20 cd04847 Peptidases_S8_Subtilis 100.0 1.6E-42 3.5E-47 373.0 19.3 261 158-636 2-291 (291)
21 cd07496 Peptidases_S8_13 Pepti 100.0 4E-42 8.6E-47 368.9 22.0 263 156-634 1-285 (285)
22 cd04077 Peptidases_S8_PCSK9_Pr 100.0 1.1E-41 2.5E-46 359.7 23.6 228 151-637 21-255 (255)
23 cd07484 Peptidases_S8_Thermita 100.0 1.5E-41 3.2E-46 360.0 22.4 246 134-638 13-259 (260)
24 cd07490 Peptidases_S8_6 Peptid 100.0 1.8E-41 3.8E-46 358.3 22.7 253 156-636 1-254 (254)
25 cd04843 Peptidases_S8_11 Pepti 100.0 2.3E-41 5E-46 358.5 21.7 147 138-346 3-155 (277)
26 cd04842 Peptidases_S8_Kp43_pro 100.0 1.3E-40 2.7E-45 359.4 25.0 277 150-636 2-293 (293)
27 cd07480 Peptidases_S8_12 Pepti 100.0 9.1E-41 2E-45 360.2 21.6 147 151-347 4-172 (297)
28 cd07498 Peptidases_S8_15 Pepti 100.0 8.3E-41 1.8E-45 350.4 19.8 240 157-634 1-242 (242)
29 cd07473 Peptidases_S8_Subtilis 100.0 4.3E-40 9.3E-45 348.7 22.9 249 155-636 2-259 (259)
30 cd07477 Peptidases_S8_Subtilis 100.0 6.2E-40 1.4E-44 341.0 21.2 226 156-634 1-229 (229)
31 cd07491 Peptidases_S8_7 Peptid 100.0 3E-40 6.6E-45 344.4 17.7 158 154-363 2-169 (247)
32 cd07482 Peptidases_S8_Lantibio 100.0 1.7E-39 3.7E-44 350.8 20.7 153 156-347 1-159 (294)
33 PF00082 Peptidase_S8: Subtila 100.0 4.2E-40 9E-45 353.4 14.6 276 158-675 1-282 (282)
34 cd04059 Peptidases_S8_Protein_ 100.0 5.7E-39 1.2E-43 347.1 19.0 171 143-363 31-212 (297)
35 cd07492 Peptidases_S8_8 Peptid 100.0 1.6E-38 3.6E-43 328.5 20.7 149 156-363 1-150 (222)
36 cd04848 Peptidases_S8_Autotran 100.0 3.9E-37 8.4E-42 327.5 21.7 246 153-636 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 9.5E-35 2.1E-39 311.1 27.1 262 151-675 197-465 (1033)
38 KOG1114 Tripeptidyl peptidase 100.0 8.3E-35 1.8E-39 324.7 21.0 239 233-675 309-557 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 2.2E-32 4.7E-37 284.2 12.7 117 230-364 33-159 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 1.2E-29 2.6E-34 264.6 21.6 122 229-364 39-166 (241)
41 COG1404 AprE Subtilisin-like s 99.9 2.9E-23 6.3E-28 240.5 22.3 148 151-347 138-290 (508)
42 KOG3526 Subtilisin-like propro 99.8 2.9E-20 6.3E-25 190.3 12.8 156 143-346 153-316 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 8.4E-17 1.8E-21 177.8 15.7 103 261-367 82-198 (361)
44 PF06280 DUF1034: Fn3-like dom 99.3 3.2E-11 7E-16 110.2 12.7 87 726-812 2-112 (112)
45 cd02133 PA_C5a_like PA_C5a_lik 98.9 1.5E-08 3.2E-13 96.9 11.0 103 429-554 40-142 (143)
46 PF05922 Inhibitor_I9: Peptida 98.8 1.8E-08 3.9E-13 86.5 8.3 79 34-129 1-82 (82)
47 cd02120 PA_subtilisin_like PA_ 98.8 5.7E-08 1.2E-12 90.9 12.2 118 373-512 2-120 (126)
48 COG4934 Predicted protease [Po 98.3 7.4E-06 1.6E-10 98.5 14.5 99 261-362 287-395 (1174)
49 cd02129 PA_hSPPL_like PA_hSPPL 98.3 5.6E-06 1.2E-10 75.5 9.7 82 421-510 30-114 (120)
50 PF02225 PA: PA domain; Inter 98.2 4.2E-06 9.2E-11 74.8 8.2 75 427-508 24-101 (101)
51 KOG3525 Subtilisin-like propro 98.2 9.3E-06 2E-10 91.0 12.6 159 143-348 25-189 (431)
52 cd04816 PA_SaNapH_like PA_SaNa 98.1 1.7E-05 3.6E-10 73.7 8.8 83 421-511 29-115 (122)
53 cd02127 PA_hPAP21_like PA_hPAP 98.0 1.9E-05 4.1E-10 72.5 8.6 83 421-512 21-110 (118)
54 cd02124 PA_PoS1_like PA_PoS1_l 98.0 3.7E-05 8E-10 71.7 10.3 83 420-511 40-122 (129)
55 cd04817 PA_VapT_like PA_VapT_l 98.0 1.6E-05 3.5E-10 74.6 7.8 74 430-510 50-133 (139)
56 cd02122 PA_GRAIL_like PA _GRAI 98.0 3.7E-05 8E-10 72.6 9.8 85 420-511 43-131 (138)
57 cd04813 PA_1 PA_1: Protease-as 97.9 3.3E-05 7.2E-10 70.7 8.3 81 420-510 26-111 (117)
58 cd04818 PA_subtilisin_1 PA_sub 97.9 4.4E-05 9.5E-10 70.4 9.0 83 420-511 26-111 (118)
59 cd02126 PA_EDEM3_like PA_EDEM3 97.9 3.9E-05 8.6E-10 71.4 8.4 82 421-511 27-119 (126)
60 cd00538 PA PA: Protease-associ 97.9 4.9E-05 1.1E-09 70.8 8.8 85 420-511 29-119 (126)
61 cd02125 PA_VSR PA_VSR: Proteas 97.9 5.6E-05 1.2E-09 70.3 8.9 84 421-511 22-120 (127)
62 cd02132 PA_GO-like PA_GO-like: 97.9 6.1E-05 1.3E-09 71.4 8.8 80 421-511 48-132 (139)
63 cd02130 PA_ScAPY_like PA_ScAPY 97.8 0.00024 5.1E-09 65.9 11.9 81 422-511 32-115 (122)
64 cd02123 PA_C_RZF_like PA_C-RZF 97.8 8.9E-05 1.9E-09 71.5 8.4 84 421-511 50-140 (153)
65 cd04819 PA_2 PA_2: Protease-as 97.4 0.0017 3.8E-08 60.5 11.6 75 430-511 38-120 (127)
66 PF14874 PapD-like: Flagellar- 96.7 0.044 9.5E-07 48.9 13.4 82 731-814 19-100 (102)
67 PF10633 NPCBM_assoc: NPCBM-as 96.2 0.016 3.4E-07 49.0 6.7 58 732-789 5-64 (78)
68 cd04815 PA_M28_2 PA_M28_2: Pro 95.8 0.028 6.1E-07 52.9 7.3 75 430-511 33-127 (134)
69 cd04814 PA_M28_1 PA_M28_1: Pro 95.8 0.035 7.6E-07 52.4 7.6 69 396-477 20-100 (142)
70 PF06030 DUF916: Bacterial pro 95.7 0.083 1.8E-06 48.7 9.6 69 731-800 26-119 (121)
71 cd04822 PA_M28_1_3 PA_M28_1_3: 95.4 0.06 1.3E-06 51.5 7.7 56 422-478 34-101 (151)
72 PF11614 FixG_C: IG-like fold 95.3 0.087 1.9E-06 48.4 8.5 55 735-789 34-88 (118)
73 cd02128 PA_TfR PA_TfR: Proteas 95.2 0.028 6E-07 55.3 4.9 40 432-477 51-90 (183)
74 cd04820 PA_M28_1_1 PA_M28_1_1: 95.1 0.073 1.6E-06 50.0 7.2 55 422-477 36-96 (137)
75 cd02131 PA_hNAALADL2_like PA_h 93.4 0.11 2.5E-06 49.0 4.6 39 433-477 37-75 (153)
76 cd02121 PA_GCPII_like PA_GCPII 92.1 0.23 5E-06 50.6 5.2 41 432-478 67-107 (220)
77 KOG2442 Uncharacterized conser 91.9 0.45 9.7E-06 52.7 7.5 68 432-506 91-163 (541)
78 PF00345 PapD_N: Pili and flag 91.1 4.8 0.0001 37.0 12.6 67 734-801 16-90 (122)
79 COG1470 Predicted membrane pro 90.3 2.8 6E-05 46.7 11.5 57 732-788 284-346 (513)
80 COG1470 Predicted membrane pro 89.9 1.6 3.4E-05 48.6 9.2 71 731-802 396-470 (513)
81 PF07718 Coatamer_beta_C: Coat 89.3 3.1 6.8E-05 38.9 9.5 66 736-801 73-139 (140)
82 PF05506 DUF756: Domain of unk 88.4 6.5 0.00014 34.0 10.5 63 733-804 19-81 (89)
83 TIGR02745 ccoG_rdxA_fixG cytoc 87.8 2 4.4E-05 48.6 8.8 55 734-788 348-402 (434)
84 KOG4628 Predicted E3 ubiquitin 87.4 1.1 2.3E-05 48.6 5.9 69 433-508 76-147 (348)
85 smart00635 BID_2 Bacterial Ig- 82.6 5.5 0.00012 33.7 7.1 45 761-808 4-48 (81)
86 cd04821 PA_M28_1_2 PA_M28_1_2: 82.3 3.1 6.8E-05 40.1 6.0 49 429-477 42-103 (157)
87 PF00635 Motile_Sperm: MSP (Ma 82.1 6.9 0.00015 34.9 8.0 52 734-787 20-71 (109)
88 PRK15308 putative fimbrial pro 77.8 14 0.00031 38.1 9.4 66 734-801 33-114 (234)
89 PF07705 CARDB: CARDB; InterP 75.2 19 0.0004 31.3 8.5 53 731-786 18-72 (101)
90 PLN03080 Probable beta-xylosid 67.9 17 0.00036 44.8 8.4 78 733-810 685-778 (779)
91 PF14016 DUF4232: Protein of u 67.0 36 0.00079 31.6 8.8 78 732-811 18-112 (131)
92 PF12690 BsuPI: Intracellular 66.5 46 0.00099 28.3 8.4 53 735-787 3-72 (82)
93 PF07610 DUF1573: Protein of u 65.5 19 0.00041 26.7 5.2 44 738-783 2-45 (45)
94 PF13598 DUF4139: Domain of un 64.8 27 0.00059 37.9 8.7 54 733-786 243-314 (317)
95 PF02368 Big_2: Bacterial Ig-l 63.8 7.4 0.00016 32.7 3.1 45 761-809 4-48 (79)
96 PRK15098 beta-D-glucoside gluc 61.5 23 0.00049 43.6 8.0 53 733-787 668-729 (765)
97 PF00927 Transglut_C: Transglu 59.2 42 0.00092 29.9 7.4 57 731-788 14-79 (107)
98 PF04744 Monooxygenase_B: Mono 58.2 2.1E+02 0.0047 31.4 13.4 87 732-819 263-380 (381)
99 TIGR00192 urease_beta urease, 57.9 22 0.00047 31.2 4.9 50 733-782 19-82 (101)
100 cd00407 Urease_beta Urease bet 55.8 29 0.00062 30.5 5.3 50 733-782 19-82 (101)
101 PRK13203 ureB urease subunit b 55.5 28 0.0006 30.7 5.1 51 732-782 18-82 (102)
102 KOG3920 Uncharacterized conser 55.2 13 0.00028 35.2 3.3 50 421-478 74-123 (193)
103 PRK13202 ureB urease subunit b 52.2 38 0.00082 29.9 5.5 49 734-782 21-83 (104)
104 PF00699 Urease_beta: Urease b 51.4 23 0.00051 31.0 4.1 51 732-782 17-81 (100)
105 PF07233 DUF1425: Protein of u 49.4 1.4E+02 0.0031 26.0 8.9 52 731-782 23-79 (94)
106 PRK13201 ureB urease subunit b 46.8 34 0.00073 31.6 4.5 50 733-782 19-82 (136)
107 PF11611 DUF4352: Domain of un 46.5 1.1E+02 0.0024 27.6 8.3 58 734-791 38-107 (123)
108 PRK09918 putative fimbrial cha 46.4 2.8E+02 0.0062 28.6 12.1 67 733-801 39-110 (230)
109 PRK13205 ureB urease subunit b 45.0 45 0.00097 31.5 5.1 51 732-782 18-82 (162)
110 PRK13204 ureB urease subunit b 42.3 42 0.00091 31.8 4.5 51 732-782 41-105 (159)
111 TIGR02231 conserved hypothetic 41.1 1.2E+02 0.0026 35.6 9.4 54 734-787 444-518 (525)
112 PF08260 Kinin: Insect kinin p 40.6 12 0.00026 17.2 0.3 6 546-551 3-8 (8)
113 PRK13198 ureB urease subunit b 39.9 48 0.001 31.3 4.5 51 732-782 46-110 (158)
114 TIGR03079 CH4_NH3mon_ox_B meth 33.7 79 0.0017 34.5 5.5 82 733-817 283-397 (399)
115 COG0832 UreB Urea amidohydrola 33.5 86 0.0019 27.5 4.7 49 734-782 20-82 (106)
116 cd09030 DUF1425 Putative perip 32.2 1.5E+02 0.0033 26.1 6.5 51 732-782 32-87 (101)
117 PF05753 TRAP_beta: Translocon 32.0 3.1E+02 0.0068 27.2 9.2 55 732-787 38-99 (181)
118 smart00237 Calx_beta Domains i 31.0 3.4E+02 0.0074 23.2 8.4 60 723-785 9-73 (90)
119 PF02845 CUE: CUE domain; Int 30.6 50 0.0011 23.9 2.6 23 613-635 6-28 (42)
120 PF08821 CGGC: CGGC domain; I 30.5 2.8E+02 0.0061 24.9 7.8 73 262-338 30-104 (107)
121 PF08626 TRAPPC9-Trs120: Trans 30.2 2.3E+02 0.0051 36.9 10.2 85 731-816 798-919 (1185)
122 TIGR00845 caca sodium/calcium 29.2 3.8E+02 0.0083 33.5 11.0 51 735-785 417-474 (928)
123 PRK15019 CsdA-binding activato 29.0 54 0.0012 31.3 3.1 31 598-629 79-109 (147)
124 KOG1058 Vesicle coat complex C 28.9 1.2E+02 0.0027 36.2 6.5 47 756-802 759-805 (948)
125 PF14263 DUF4354: Domain of un 28.8 1.5E+02 0.0033 27.4 5.8 63 733-811 48-118 (124)
126 PRK13192 bifunctional urease s 28.2 79 0.0017 31.5 4.2 51 732-782 127-191 (208)
127 PF13620 CarboxypepD_reg: Carb 27.9 2.4E+02 0.0052 23.2 6.8 42 739-784 41-82 (82)
128 PF14310 Fn3-like: Fibronectin 27.1 75 0.0016 26.0 3.3 21 767-787 25-45 (71)
129 TIGR03391 FeS_syn_CsdE cystein 27.0 62 0.0013 30.6 3.1 33 597-630 73-105 (138)
130 TIGR01451 B_ant_repeat conserv 25.9 2E+02 0.0042 22.1 5.2 39 731-771 11-50 (53)
131 PF00553 CBM_2: Cellulose bind 25.0 4.7E+02 0.01 22.9 9.9 31 732-762 13-44 (101)
132 PRK09296 cysteine desufuration 24.8 71 0.0015 30.2 3.1 32 597-629 68-99 (138)
133 PRK13986 urease subunit alpha; 24.6 1.2E+02 0.0027 30.6 4.8 51 732-782 123-187 (225)
134 PF13940 Ldr_toxin: Toxin Ldr, 23.3 68 0.0015 22.1 1.8 13 603-615 14-26 (35)
135 COG2166 sufE Cysteine desulfur 22.7 76 0.0017 30.0 2.8 30 598-628 74-103 (144)
136 PF03160 Calx-beta: Calx-beta 22.6 2.9E+02 0.0062 23.9 6.5 28 758-785 57-85 (100)
137 PF02657 SufE: Fe-S metabolism 22.0 92 0.002 28.8 3.2 33 597-630 59-91 (125)
138 TIGR03102 halo_cynanin halocya 21.4 1.5E+02 0.0033 27.0 4.5 20 761-780 36-55 (115)
139 PF13473 Cupredoxin_1: Cupredo 21.2 1.4E+02 0.003 26.4 4.1 48 729-786 38-85 (104)
140 PF02601 Exonuc_VII_L: Exonucl 21.1 2.5E+02 0.0054 30.4 7.0 78 265-345 38-119 (319)
141 PF04255 DUF433: Protein of un 20.6 84 0.0018 24.5 2.3 37 596-632 12-54 (56)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.3e-51 Score=443.78 Aligned_cols=231 Identities=48% Similarity=0.759 Sum_probs=189.4
Q ss_pred ccccccCCCCccCCCcccccc-cCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCc
Q 003446 126 AKLMTSYTPQFLGLPQGVWTQ-RGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGK 204 (819)
Q Consensus 126 ~~~~~~~~~~~~g~~~~~w~~-~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~k 204 (819)
+++++++++.+++++. .|.. .+..+++|+||+|||||||||++||+|.+. ........|.+.|..+..+....||+|
T Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k 78 (307)
T cd04852 1 YQLHTTRSPDFLGLPG-AWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADV-GGGPYPHTWPGDCVTGEDFNPFSCNNK 78 (307)
T ss_pred CCccccCCHHHcCCCC-CCCcccccccCCCCccEEEEEeCCCCCCCcCcccC-CCCCCCCCCCCcccCCCCcCccCcCCe
Confidence 4677889999999987 8876 455689999999999999999999999986 112223389999999988888889999
Q ss_pred eEEEEEcccchhhccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCC-CCC
Q 003446 205 IVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-VGT 283 (819)
Q Consensus 205 i~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~-g~~ 283 (819)
+++.++|.++.......+...+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++.. .+.
T Consensus 79 i~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~ 158 (307)
T cd04852 79 LIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCF 158 (307)
T ss_pred EEEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCcc
Confidence 9999999876433222223344567789999999999999998765555555566678899999999999999984 488
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCCcceEEEcc
Q 003446 284 LADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAA 362 (819)
Q Consensus 284 ~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA 362 (819)
.+++++||++|++++++|||||||.... ..+.+.++.++..+.++|++||+||||+|+...+.++..||+++|||
T Consensus 159 ~~~~~~ai~~a~~~g~~Vin~S~G~~~~----~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga 233 (307)
T cd04852 159 GSDILAAIDQAIADGVDVISYSIGGGSP----DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAA 233 (307)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCC----CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEe
Confidence 8999999999999999999999998643 22446788888999999999999999999877777778888888875
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=5.1e-50 Score=449.83 Aligned_cols=162 Identities=20% Similarity=0.251 Sum_probs=121.9
Q ss_pred CCCCCCeEEEEecceeccCCCCCCCCC-CCCCCCCCCCCccccCCCCCCCCCCCc--eEEEEEcccchhhccccCCCCCC
Q 003446 151 KNAGEGIVIGFVDTGINPSHPSFANYN-PFEPNISHFSGDCETGPRFPLSSCNGK--IVSARFFSAGAQAVATLNTSVDF 227 (819)
Q Consensus 151 ~~~G~gv~VaVIDtGid~~Hp~f~~~~-~~~~~~~~~~~~~~~g~~~~~~~~n~k--i~g~~~~~~~~~~~~~~~~~~~~ 227 (819)
+.+|+||+|||||||||++||||.++. .....+...++... ..|+. -+.+++|+++ .
T Consensus 312 ~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el~GrdgiDd--------D~nG~vdd~~G~nfVd~------------~ 371 (639)
T PTZ00262 312 PHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKELHGRKGIDD--------DNNGNVDDEYGANFVNN------------D 371 (639)
T ss_pred ccCCCCcEEEEEccCCCCCChhhhhhcccccccccCcccccc--------ccCCcccccccccccCC------------C
Confidence 478999999999999999999999871 10100000111110 01111 1234555532 2
Q ss_pred CCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCCcEEEeCC
Q 003446 228 LSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGVDILTLSI 306 (819)
Q Consensus 228 ~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~Sl 306 (819)
.+|.|.+||||||||||||...++ ..+.||||+|+|+++|+++..| +..+++++||+||++.|++||||||
T Consensus 372 ~~P~D~~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSl 443 (639)
T PTZ00262 372 GGPMDDNYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSF 443 (639)
T ss_pred CCCCCCCCcchHHHHHHhccccCC--------CceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEecc
Confidence 457899999999999999975322 2368999999999999999877 8889999999999999999999999
Q ss_pred CCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCC
Q 003446 307 GPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAP 347 (819)
Q Consensus 307 G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~ 347 (819)
|+.. +...+..|+++|.++||+||+||||+|...
T Consensus 444 G~~~-------~s~~l~~AV~~A~~kGILVVAAAGN~g~~~ 477 (639)
T PTZ00262 444 SFDE-------YSGIFNESVKYLEEKGILFVVSASNCSHTK 477 (639)
T ss_pred ccCC-------ccHHHHHHHHHHHHCCCEEEEeCCCCCCCc
Confidence 9743 235788999999999999999999998653
No 3
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.2e-48 Score=417.56 Aligned_cols=290 Identities=30% Similarity=0.351 Sum_probs=190.3
Q ss_pred CCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCC
Q 003446 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDA 233 (819)
Q Consensus 154 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 233 (819)
|+||+|||||||||++||||.++... .|...++ +.++++.+.++..+ ....+.|+
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~-----~~~~~~d---------~~~~~~~g~d~~~~-----------~~~~~~D~ 55 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF-----SWKLKFD---------YKAYLLPGMDKWGG-----------FYVIMYDF 55 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC-----CcccccC---------cCCCccCCcCCCCC-----------ccCCCCCc
Confidence 89999999999999999999865100 1111000 00112222222211 11346789
Q ss_pred CCCccccccccccCCCcccccccc-cccccccccCCCeEEEEEeecCCC-CCHHHHHH-------HHHHH--HhCCCcEE
Q 003446 234 VGHGSHVASTAAGNAGVPVVVDGF-FYGLASGMAPCARIAVYKAMYPTV-GTLADVIA-------AIDQA--TMDGVDIL 302 (819)
Q Consensus 234 ~gHGThVAGiiag~~~~~~~~~g~-~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~-------ai~~a--~~~g~dVI 302 (819)
+||||||||||||.........++ ....+.||||+|+|+++|++...+ .....+.. +++|+ .+++++||
T Consensus 56 ~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VI 135 (311)
T cd07497 56 FSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVI 135 (311)
T ss_pred cccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEE
Confidence 999999999999975321110000 112468999999999999997543 32222222 34444 36899999
Q ss_pred EeCCCCCCCC-CCccccccHHHHHHHHH-HhCCcEEEEeCCCCCCCCC--CcccCCcceEEEccccccceeeeeEEeCCC
Q 003446 303 TLSIGPDEPP-RDTITMLGIFDVLMLFA-RRAGVFVVQAAGNQGPAPS--TVVSYSPWAVAAAACTTDRIYPGSLLLGNG 378 (819)
Q Consensus 303 n~SlG~~~~~-~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgAs~~~~~~~~~~~~~~g 378 (819)
|||||..... .....-.+..+.+++.+ .++||++|+||||+|+... ..|+.++++|+|||++.....+
T Consensus 136 N~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~-------- 207 (311)
T cd07497 136 SNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRP-------- 207 (311)
T ss_pred EecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccc--------
Confidence 9999975422 11000112333333332 4899999999999998643 3466789999999975321100
Q ss_pred eEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHH
Q 003446 379 LKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAV 458 (819)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~ 458 (819)
.|... .|
T Consensus 208 ------------------~~~~~---------------------~~---------------------------------- 214 (311)
T cd07497 208 ------------------FYLFG---------------------YL---------------------------------- 214 (311)
T ss_pred ------------------hhhhc---------------------cc----------------------------------
Confidence 00000 00
Q ss_pred HHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeecc
Q 003446 459 INTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFE 538 (819)
Q Consensus 459 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (819)
.
T Consensus 215 -------------------------------------------------------------------------------~ 215 (311)
T cd07497 215 -------------------------------------------------------------------------------P 215 (311)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred CCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHh
Q 003446 539 GRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQH 618 (819)
Q Consensus 539 ~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~ 618 (819)
...+.++.||||||+.+ +++||||+|||++|+++.+.............|..++|||||||||||++|||+|+
T Consensus 216 ~~~~~~~~fSs~Gp~~~-------g~~kPdv~ApG~~i~s~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VaG~aALll~~ 288 (311)
T cd07497 216 GGSGDVVSWSSRGPSIA-------GDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPMTAGSAALVISA 288 (311)
T ss_pred CCCCCccccccCCCCcc-------cCCCCceeccCcceEeecccCCCCcccCCCcceeeecchhhhhHHHHHHHHHHHHH
Confidence 11246899999999986 79999999999999998764432111112347999999999999999999999998
Q ss_pred CC------CCCHHHHHHHHHhcc
Q 003446 619 NP------SWTPTMIASAISSTA 635 (819)
Q Consensus 619 ~P------~~sp~~ik~~L~~TA 635 (819)
+| .++|++||++|++||
T Consensus 289 ~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 289 LKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred hhhhcCCCCCCHHHHHHHHHhcC
Confidence 76 589999999999997
No 4
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=5.4e-48 Score=405.89 Aligned_cols=244 Identities=27% Similarity=0.366 Sum_probs=193.8
Q ss_pred CCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCC
Q 003446 151 KNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSP 230 (819)
Q Consensus 151 ~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 230 (819)
+++|+||+|||||||||.+||+|.+... ..+|.. ....
T Consensus 4 g~tG~gv~VaviDsGv~~~hp~l~~~~~-----------------------------~~~~~~-------------~~~~ 41 (255)
T cd07479 4 GYTGAGVKVAVFDTGLAKDHPHFRNVKE-----------------------------RTNWTN-------------EKTL 41 (255)
T ss_pred CCCCCCCEEEEEeCCCCCCCcchhcccc-----------------------------ccccCC-------------CCCC
Confidence 8999999999999999999999985310 011111 1234
Q ss_pred CCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCC
Q 003446 231 FDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGVDILTLSIGPD 309 (819)
Q Consensus 231 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~ 309 (819)
.|..||||||||||+|+.. ...||||+|+|+.+|++.+.+ +..+.++++++||+++++||||||||..
T Consensus 42 ~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~ 110 (255)
T cd07479 42 DDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGP 110 (255)
T ss_pred CCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCC
Confidence 5778999999999999742 247999999999999998876 6678899999999999999999999975
Q ss_pred CCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCC--cccCCcceEEEccccccceeeeeEEeCCCeEEeeecCC
Q 003446 310 EPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPST--VVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLS 387 (819)
Q Consensus 310 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~~ 387 (819)
.. ....+.+++.++.++|++||+||||+|+...+ .|+..+++|+|||+..
T Consensus 111 ~~------~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~---------------------- 162 (255)
T cd07479 111 DF------MDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF---------------------- 162 (255)
T ss_pred CC------CCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc----------------------
Confidence 32 22456677888899999999999999975433 4556678888876321
Q ss_pred CCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCc
Q 003446 388 GPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGF 467 (819)
Q Consensus 388 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga 467 (819)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeecc
Q 003446 468 MGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRF 547 (819)
Q Consensus 468 ~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~F 547 (819)
.+.++.|
T Consensus 163 -------------------------------------------------------------------------~~~~~~~ 169 (255)
T cd07479 163 -------------------------------------------------------------------------DDNIARF 169 (255)
T ss_pred -------------------------------------------------------------------------CCccccc
Confidence 1346788
Q ss_pred cccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCC----CCC
Q 003446 548 SSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNP----SWT 623 (819)
Q Consensus 548 SS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P----~~s 623 (819)
||+|++.... +...+++||||.|||.+|+++.. ++.|..++|||||||||||++|||+|++| .++
T Consensus 170 S~~g~~~~~~-p~~~g~~~~di~apG~~i~~~~~----------~~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~ 238 (255)
T cd07479 170 SSRGMTTWEL-PGGYGRVKPDIVTYGSGVYGSKL----------KGGCRALSGTSVASPVVAGAVALLLSTVPEKRDLIN 238 (255)
T ss_pred cCCCCCcccc-cCCCCCcCccEEecCCCeecccc----------CCCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCC
Confidence 9999653110 00126789999999999998763 34789999999999999999999999998 689
Q ss_pred HHHHHHHHHhcccccc
Q 003446 624 PTMIASAISSTATKYD 639 (819)
Q Consensus 624 p~~ik~~L~~TA~~~~ 639 (819)
|.+||++|++||+++.
T Consensus 239 p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 239 PASMKQALIESATRLP 254 (255)
T ss_pred HHHHHHHHHhhcccCC
Confidence 9999999999998763
No 5
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=1.1e-47 Score=432.66 Aligned_cols=430 Identities=21% Similarity=0.242 Sum_probs=237.5
Q ss_pred CCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccc-hhhccccCCCCCCCCC
Q 003446 152 NAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAG-AQAVATLNTSVDFLSP 230 (819)
Q Consensus 152 ~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~-~~~~~~~~~~~~~~~~ 230 (819)
++|+||+|||||||||+.||+|...++..+.+..|++....+.... ...++..+... ...........+....
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~p~~~~~~ 74 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPG------GYYGGGEYTEEIINAALASDNPYDIVPS 74 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCCc------cccCceEEeHHHHHHHHhcCCccccCcC
Confidence 4799999999999999999999988888888889999877543211 12222222221 1011011111222445
Q ss_pred CCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-----------CCHHHHHHHHHHHHhC--
Q 003446 231 FDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-----------GTLADVIAAIDQATMD-- 297 (819)
Q Consensus 231 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-----------~~~~~i~~ai~~a~~~-- 297 (819)
.|.+||||||||||||+...+ ..+.||||+|+|+++|++...+ +..++++.||+|+++.
T Consensus 75 ~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~ 146 (455)
T cd07478 75 RDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKAL 146 (455)
T ss_pred CCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHH
Confidence 689999999999999986421 3468999999999999998865 4678999999999975
Q ss_pred ---CCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhC-CcEEEEeCCCCCCCCCCcccCCcceEEEccccccceeeeeE
Q 003446 298 ---GVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRA-GVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGSL 373 (819)
Q Consensus 298 ---g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~~~~~~~~ 373 (819)
.+.|||||||...++. ...+.++++++.+..+ |++||+||||+|....+.... +... ...-.-.+
T Consensus 147 ~~~~p~VInlSlG~~~g~~---~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~----~~~~----~~~~~ie~ 215 (455)
T cd07478 147 ELNKPLVINISLGTNFGSH---DGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGG----IVPN----GETKTVEL 215 (455)
T ss_pred HhCCCeEEEEccCcCCCCC---CCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeee----eccC----CceEEEEE
Confidence 3579999999876552 1236788888887776 999999999999854333210 0000 00000111
Q ss_pred EeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCcc
Q 003446 374 LLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTS 453 (819)
Q Consensus 374 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~ 453 (819)
.++.++......+....+ ..+.+..-........... ..... ...+....-..+|.+..+......|..
T Consensus 216 ~v~~~~~~~~~eiW~~~~----d~~~v~i~sP~Ge~~~~i~----~~~~~---~~~~~~~~~~t~i~v~y~~~~~~~g~~ 284 (455)
T cd07478 216 NVGEGEKGFNLEIWGDFP----DRFSVSIISPSGESSGRIN----PGIGG---SESYKFVFEGTTVYVYYYLPEPYTGDQ 284 (455)
T ss_pred EECCCCcceEEEEecCCC----CEEEEEEECCCCCccCccC----cCCCc---ceeEEEEECCeEEEEEEcCCCCCCCCe
Confidence 122211110000000000 0111100000000000000 00000 000000001112222222111111111
Q ss_pred chHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccce
Q 003446 454 TLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGR 533 (819)
Q Consensus 454 ~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (819)
.+.....+ ...|-.-+.++......+ ....++|.-.+...+. .++... ...++++.... ....
T Consensus 285 ~i~i~~~~-~~~GiW~i~~~~~~~~~g----~~~~Wlp~~~~~~~~t-----~f~~~~-----~~~tit~Pa~~--~~vi 347 (455)
T cd07478 285 LIFIRFKN-IKPGIWKIRLTGVSITDG----RFDAWLPSRGLLSENT-----RFLEPD-----PYTTLTIPGTA--RSVI 347 (455)
T ss_pred EEEEEccC-CCccceEEEEEeccCCCc----eEEEEecCcCcCCCCC-----EeecCC-----CCceEecCCCC--CCcE
Confidence 11111111 112333333333221111 1122233222211100 000000 00111111100 0000
Q ss_pred e-eeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHH
Q 003446 534 V-ASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIA 612 (819)
Q Consensus 534 ~-~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~a 612 (819)
. ..+....+.++.||||||+.+ +++||||+|||++|+++++ ++.|..++|||||||||||++
T Consensus 348 tVga~~~~~~~~~~~Ss~G~~~~-------~~~kpdi~APG~~i~s~~~----------~~~~~~~sGTS~Aap~vaG~a 410 (455)
T cd07478 348 TVGAYNQNNNSIAIFSGRGPTRD-------GRIKPDIAAPGVNILTASP----------GGGYTTRSGTSVAAAIVAGAC 410 (455)
T ss_pred EEEEEeCCCCcccCccCCCcCCC-------CCcCceEEecCCCEEEeec----------CCcEEeeCcHHHHHHHHHHHH
Confidence 1 112233457999999999987 6999999999999999985 458999999999999999999
Q ss_pred HHHHHhC------CCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccc
Q 003446 613 ALIKQHN------PSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSG 666 (819)
Q Consensus 613 ALl~q~~------P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG 666 (819)
|||+|++ |.|++++||++|++||++.. ...+++++||||
T Consensus 411 ALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~---------------~~~~pn~~~GyG 455 (455)
T cd07478 411 ALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRP---------------GDEYPNPEWGYG 455 (455)
T ss_pred HHHHHhchhccCCCCCCHHHHHHHHHHhCccCC---------------CCCCCCCCCCCC
Confidence 9999975 56799999999999998874 124567889998
No 6
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=9.6e-48 Score=406.75 Aligned_cols=271 Identities=27% Similarity=0.241 Sum_probs=201.0
Q ss_pred CCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCC
Q 003446 151 KNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSP 230 (819)
Q Consensus 151 ~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 230 (819)
+++|+||+|||||||||.+||++.+...+ ++.+...+.. .....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~------------------------~l~~~~~~~~------------~~~~~ 44 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASG------------------------DLPGNVNVLG------------DLDGG 44 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCC------------------------CCCcceeecc------------ccCCC
Confidence 57999999999999999998855432000 1111111110 01234
Q ss_pred CCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHhCCCcEEEeCCCCCC
Q 003446 231 FDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVDILTLSIGPDE 310 (819)
Q Consensus 231 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 310 (819)
.|.++|||||||||+ ||||+|+|+.+|+.. ..+++++||+|++++|++|||||||...
T Consensus 45 ~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~~----~~~~i~~ai~~a~~~g~~Vin~S~g~~~ 102 (275)
T cd05562 45 SGGGDEGRAMLEIIH------------------DIAPGAELAFHTAGG----GELDFAAAIRALAAAGADIIVDDIGYLN 102 (275)
T ss_pred CCCCchHHHHHHHHh------------------ccCCCCEEEEEecCC----CHHHHHHHHHHHHHcCCCEEEecccccC
Confidence 578899999999983 899999999988743 4788999999999999999999999754
Q ss_pred CCCCccccccHHHHHHHHHHhC-CcEEEEeCCCCCCCCC-CcccCCcceEEEccccccceeeeeEEeCCCeEEeeecCCC
Q 003446 311 PPRDTITMLGIFDVLMLFARRA-GVFVVQAAGNQGPAPS-TVVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLSG 388 (819)
Q Consensus 311 ~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~~~ 388 (819)
.+. .....+..+++++.++ |++||+||||+|.... ..|+..|++|+|||++.+.....
T Consensus 103 ~~~---~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~----------------- 162 (275)
T cd05562 103 EPF---FQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAF----------------- 162 (275)
T ss_pred CCc---ccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccc-----------------
Confidence 321 1224678888888887 9999999999998543 34678899999999754321000
Q ss_pred CCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCce
Q 003446 389 PTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFM 468 (819)
Q Consensus 389 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~ 468 (819)
..|. + .
T Consensus 163 ---------------------------------~s~~-------------------------~---------------~- 168 (275)
T cd05562 163 ---------------------------------GSDP-------------------------A---------------P- 168 (275)
T ss_pred ---------------------------------cccc-------------------------c---------------c-
Confidence 0000 0 0
Q ss_pred EEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeeccc
Q 003446 469 GFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFS 548 (819)
Q Consensus 469 g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~FS 548 (819)
.......+.||
T Consensus 169 ---------------------------------------------------------------------~~~~s~~~~~~ 179 (275)
T cd05562 169 ---------------------------------------------------------------------GGTPSSFDPVG 179 (275)
T ss_pred ---------------------------------------------------------------------CCCcccccCCc
Confidence 00001345678
Q ss_pred ccCCCCCCCCCCCCCCCCCccccCCC-eEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCCCHHHH
Q 003446 549 SRGPDFTDLSRNPTDVLKPDVIAPGH-QIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627 (819)
Q Consensus 549 S~Gp~~~~~~~~~~~~~KPDI~APG~-~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~i 627 (819)
++||+.+ +++||||+|||+ ++.+++ .++.|..++|||||||||||++|||+|++|+|++.||
T Consensus 180 ~~~p~~~-------~~~~~di~Apgg~~~~~~~----------~~~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v 242 (275)
T cd05562 180 IRLPTPE-------VRQKPDVTAPDGVNGTVDG----------DGDGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADI 242 (275)
T ss_pred ccCcCCC-------CCcCCeEEcCCcccccCCC----------cCCceeecccchHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 8999875 589999999975 445443 3458999999999999999999999999999999999
Q ss_pred HHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCC
Q 003446 628 ASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675 (819)
Q Consensus 628 k~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~ 675 (819)
|++|++||+++...+ .+..||||+||+.+|++
T Consensus 243 ~~~L~~tA~~~~~~g----------------~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 243 RDALRSTALDMGEPG----------------YDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHHHhCcccCCCC----------------CCCCcCcCcccHHHHhh
Confidence 999999998874322 34679999999999986
No 7
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=1.2e-46 Score=415.64 Aligned_cols=314 Identities=28% Similarity=0.358 Sum_probs=230.3
Q ss_pred cccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCcc----ccCCCCCCCCCCCceEEEEEcccchhhc
Q 003446 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDC----ETGPRFPLSSCNGKIVSARFFSAGAQAV 218 (819)
Q Consensus 143 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~----~~g~~~~~~~~n~ki~g~~~~~~~~~~~ 218 (819)
+|++. .++|+||+|||||||||++||+|.+...... .|++.+ .........+++.+++++++|.+...
T Consensus 2 ~w~~~---~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 73 (346)
T cd07475 2 LWDKG---GYKGEGMVVAVIDSGVDPTHDAFRLDDDSKA---KYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNND-- 73 (346)
T ss_pred hhhhc---CCCCCCcEEEEEeCCCCCCChhHccCCCccc---ccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCC--
Confidence 67762 2489999999999999999999998722211 111001 11122334567889999999986510
Q ss_pred cccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecC--CC-CCHHHHHHHHHHHH
Q 003446 219 ATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYP--TV-GTLADVIAAIDQAT 295 (819)
Q Consensus 219 ~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~--~g-~~~~~i~~ai~~a~ 295 (819)
+.....|..+|||||||||+|...... ....+.||||+|+|+.+|+++. .+ .....+++++++++
T Consensus 74 -------~~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~ 141 (346)
T cd07475 74 -------DILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAV 141 (346)
T ss_pred -------ccCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHH
Confidence 111144788999999999999864311 1134689999999999999974 33 67788999999999
Q ss_pred hCCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcc----------------cCCcceEE
Q 003446 296 MDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVV----------------SYSPWAVA 359 (819)
Q Consensus 296 ~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~----------------~~~p~vit 359 (819)
+.|++|||||||...... .....+..+++++.++|++||+||||+|....... ...+++|+
T Consensus 142 ~~g~~Vin~S~G~~~~~~---~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~ 218 (346)
T cd07475 142 KLGADVINMSLGSTAGFV---DLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLT 218 (346)
T ss_pred HcCCCEEEECCCcCCCCC---CCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceE
Confidence 999999999999865432 34567888999999999999999999986543211 11122222
Q ss_pred EccccccceeeeeEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceE
Q 003446 360 AAACTTDRIYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSV 439 (819)
Q Consensus 360 VgAs~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gki 439 (819)
||++..
T Consensus 219 Vga~~~-------------------------------------------------------------------------- 224 (346)
T cd07475 219 VASANK-------------------------------------------------------------------------- 224 (346)
T ss_pred Eeeccc--------------------------------------------------------------------------
Confidence 222110
Q ss_pred EEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcc
Q 003446 440 VICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGV 519 (819)
Q Consensus 440 v~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~ 519 (819)
T Consensus 225 -------------------------------------------------------------------------------- 224 (346)
T cd07475 225 -------------------------------------------------------------------------------- 224 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeceeeeeccceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecc
Q 003446 520 AIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLS 599 (819)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~s 599 (819)
.......+.++.||+|||+.. .++||||+|||.+|+++.. ++.|..++
T Consensus 225 ---------------~~~~~~~~~~~~~S~~G~~~~-------~~~~pdi~apG~~i~s~~~----------~~~~~~~~ 272 (346)
T cd07475 225 ---------------KVPNPNGGQMSGFSSWGPTPD-------LDLKPDITAPGGNIYSTVN----------DNTYGYMS 272 (346)
T ss_pred ---------------ccCCCCCCccCCCcCCCCCcc-------cCcCCeEEeCCCCeEEecC----------CCceEeeC
Confidence 000112356889999999986 6899999999999999873 45799999
Q ss_pred cccchhhHHHHHHHHHHHh----CCCCCHHH----HHHHHHhcccccccCCCccccccccccccCCCCCccccccccccc
Q 003446 600 GTSMATPHIAGIAALIKQH----NPSWTPTM----IASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSAT 671 (819)
Q Consensus 600 GTSMAaP~VAG~aALl~q~----~P~~sp~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~ 671 (819)
|||||||+|||++|||+|+ +|.|++.+ ||.+|++||.+..... .....+.+.++|+|+||+.
T Consensus 273 GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~~----------~~~~~~~~~~~G~G~vn~~ 342 (346)
T cd07475 273 GTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSE----------DTKTYYSPRRQGAGLIDVA 342 (346)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccccC----------CCCccCCccccCcchhcHH
Confidence 9999999999999999997 79999877 7889999998532111 1345667888999999999
Q ss_pred ccCC
Q 003446 672 RALD 675 (819)
Q Consensus 672 ~Al~ 675 (819)
+|++
T Consensus 343 ~Av~ 346 (346)
T cd07475 343 KAIA 346 (346)
T ss_pred HhhC
Confidence 9985
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-45 Score=401.18 Aligned_cols=295 Identities=33% Similarity=0.385 Sum_probs=224.8
Q ss_pred cccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccC
Q 003446 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLN 222 (819)
Q Consensus 143 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~ 222 (819)
+|+. +++|+||+|||||+|||++||+|.++.... .++.+.++|..+... ..+
T Consensus 5 ~~~~----g~tG~gv~VaViDsGid~~hp~l~~~~~~~----------------------~~~~~~~d~~~~~~~--~~~ 56 (312)
T cd07489 5 LHAE----GITGKGVKVAVVDTGIDYTHPALGGCFGPG----------------------CKVAGGYDFVGDDYD--GTN 56 (312)
T ss_pred HHhC----CCCCCCCEEEEEECCCCCCChhhhcCCCCC----------------------ceeccccccCCcccc--ccc
Confidence 6776 899999999999999999999999862110 123333333322110 011
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCCcE
Q 003446 223 TSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGVDI 301 (819)
Q Consensus 223 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dV 301 (819)
...+...+.|..+|||||||||+|...+ ..+.||||+|+|+.+|+++..+ ...+.++++++||++++++|
T Consensus 57 ~~~~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~i 127 (312)
T cd07489 57 PPVPDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADV 127 (312)
T ss_pred CCCCCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCE
Confidence 1223356678899999999999998642 2358999999999999998766 66777899999999999999
Q ss_pred EEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCC---CcccCCcceEEEccccccceeeeeEEeCCC
Q 003446 302 LTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPS---TVVSYSPWAVAAAACTTDRIYPGSLLLGNG 378 (819)
Q Consensus 302 In~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgAs~~~~~~~~~~~~~~g 378 (819)
||||||....+. ...+..+++++.++|+++|+||||+|.... ..++..+++|+||+++
T Consensus 128 In~S~g~~~~~~-----~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~-------------- 188 (312)
T cd07489 128 ITASLGGPSGWS-----EDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD-------------- 188 (312)
T ss_pred EEeCCCcCCCCC-----CCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec--------------
Confidence 999999865432 256777888899999999999999986432 2233445555555310
Q ss_pred eEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHH
Q 003446 379 LKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAV 458 (819)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~ 458 (819)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeecc
Q 003446 459 INTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFE 538 (819)
Q Consensus 459 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (819)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHh
Q 003446 539 GRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQH 618 (819)
Q Consensus 539 ~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~ 618 (819)
+.||+|||+.+ ...||||+|||++|+++++.. .+.|..++|||||||+|||++|||+|+
T Consensus 189 ------~~~s~~g~~~~-------~~~kpdv~ApG~~i~~~~~~~--------~~~~~~~~GTS~Aap~vaG~~Al~~~~ 247 (312)
T cd07489 189 ------SYFSSWGPTNE-------LYLKPDVAAPGGNILSTYPLA--------GGGYAVLSGTSMATPYVAGAAALLIQA 247 (312)
T ss_pred ------CCccCCCCCCC-------CCcCccEEcCCCCEEEeeeCC--------CCceEeeccHHHHHHHHHHHHHHHHHh
Confidence 45789999886 589999999999999998642 236999999999999999999999999
Q ss_pred C-CCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCCCCeEEe
Q 003446 619 N-PSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALDPGLVLS 681 (819)
Q Consensus 619 ~-P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~~~lv~d 681 (819)
+ |.+++.+||++|++||.++...+..- ....+++...+|+|+||+.+|++..-.++
T Consensus 248 ~~~~~~~~~v~~~l~~ta~~~~~~~~~~-------~~~~~~~~~~~G~G~vn~~~a~~~~~~~~ 304 (312)
T cd07489 248 RHGKLSPAELRDLLASTAKPLPWSDGTS-------ALPDLAPVAQQGAGLVNAYKALYATTTLS 304 (312)
T ss_pred cCCCCCHHHHHHHHHHhCccccccCCCc-------cccCCCCHhhcCcceeeHHHHhcCCcccc
Confidence 9 99999999999999999876443210 01113567889999999999999765443
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=1.7e-45 Score=388.67 Aligned_cols=249 Identities=28% Similarity=0.321 Sum_probs=201.2
Q ss_pred cccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccC
Q 003446 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLN 222 (819)
Q Consensus 143 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~ 222 (819)
+|.. +++|+||+|||||+|||++||+|.+.. ... ...+..
T Consensus 2 lw~~----g~~g~gV~VaViDsGid~~hp~l~~~~--~~~-------------------------~~~~~~--------- 41 (267)
T cd07476 2 LFAF----GGGDPRITIAILDGPVDRTHPCFRGAN--LTP-------------------------LFTYAA--------- 41 (267)
T ss_pred ceec----cCCCCCeEEEEeCCCcCCCChhhCCCc--ccc-------------------------ccCccc---------
Confidence 5766 899999999999999999999999751 000 000000
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC--CCHHHHHHHHHHHHhCCCc
Q 003446 223 TSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV--GTLADVIAAIDQATMDGVD 300 (819)
Q Consensus 223 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~d 300 (819)
......|..+|||||||||+|+... .+.||||+|+|+.+|++...+ ....++++||+||+++|++
T Consensus 42 ---~~~~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~ 108 (267)
T cd07476 42 ---AACQDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAH 108 (267)
T ss_pred ---cCCCCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 0123456789999999999987531 357999999999999998754 3467899999999999999
Q ss_pred EEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCCcceEEEccccccceeeeeEEeCCCeE
Q 003446 301 ILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGSLLLGNGLK 380 (819)
Q Consensus 301 VIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~ 380 (819)
|||||||..... ......+.+++++|.++|++||+||||+|......|+..|++|+|||+..+
T Consensus 109 VIN~S~G~~~~~---~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------- 171 (267)
T cd07476 109 IINISGGRLTQT---GEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD-------------- 171 (267)
T ss_pred EEEecCCcCCCC---CCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC--------------
Confidence 999999975422 123467889999999999999999999998777778888999999874210
Q ss_pred EeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHH
Q 003446 381 LGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVIN 460 (819)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~ 460 (819)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCC
Q 003446 461 TAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGR 540 (819)
Q Consensus 461 ~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (819)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCC
Q 003446 541 APIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNP 620 (819)
Q Consensus 541 ~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P 620 (819)
+.++.||+||+.. .||||+|||.+|+++.+ ++.|..++|||||||||||++|||+|++|
T Consensus 172 -~~~~~~s~~g~~~----------~~~~l~ApG~~i~~~~~----------~~~~~~~sGTS~AaP~vaG~aALl~s~~~ 230 (267)
T cd07476 172 -GLPLKFSNWGADY----------RKKGILAPGENILGAAL----------GGEVVRRSGTSFAAAIVAGIAALLLSLQL 230 (267)
T ss_pred -CCeeeecCCCCCC----------CCceEEecCCCceeecC----------CCCeEEeccHHHHHHHHHHHHHHHHHhhh
Confidence 2356789999764 47899999999999874 45899999999999999999999999988
Q ss_pred C----CCHHHHHHHHHhcccccccCC
Q 003446 621 S----WTPTMIASAISSTATKYDNYG 642 (819)
Q Consensus 621 ~----~sp~~ik~~L~~TA~~~~~~g 642 (819)
. ++|++||++|++||+++...+
T Consensus 231 ~~~~~~~~~~vk~~L~~tA~~~~~~~ 256 (267)
T cd07476 231 RRGAPPDPLAVRRALLETATPCDPEA 256 (267)
T ss_pred hhCCCCCHHHHHHHHHHhCccCCCcc
Confidence 7 899999999999999986443
No 10
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=2.7e-45 Score=393.29 Aligned_cols=267 Identities=24% Similarity=0.315 Sum_probs=187.9
Q ss_pred CCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCce--EEEEEcccchhhc-----cccC-----
Q 003446 155 EGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKI--VSARFFSAGAQAV-----ATLN----- 222 (819)
Q Consensus 155 ~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki--~g~~~~~~~~~~~-----~~~~----- 222 (819)
|+|+|||||||||++||||++. .|....+...+-..+..|+.+ +++++|....... ...+
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~--------~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~ 72 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK--------LWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKG 72 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh--------hhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCcccccccc
Confidence 6899999999999999999987 333222210000011112211 3455554311000 0000
Q ss_pred -CCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHhCCCcE
Q 003446 223 -TSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVDI 301 (819)
Q Consensus 223 -~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dV 301 (819)
...+...+.+..+|||||||||+|...++ ..+.||||+|+|+.+|++.......+++++||+||++.|++|
T Consensus 73 ~g~~~~~~~~~~~gHGT~VAGiIaa~~~n~--------~g~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~I 144 (291)
T cd07483 73 YGNNDVNGPISDADHGTHVAGIIAAVRDNG--------IGIDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKV 144 (291)
T ss_pred ccccccCCCCCCCCcHHHHHHHHhCcCCCC--------CceEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcE
Confidence 01122345578999999999999975432 236799999999999998654467789999999999999999
Q ss_pred EEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCccc-----------CCcceEEEccccccceee
Q 003446 302 LTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVS-----------YSPWAVAAAACTTDRIYP 370 (819)
Q Consensus 302 In~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~-----------~~p~vitVgAs~~~~~~~ 370 (819)
||||||..... ....++.++++|.++|+++|+||||+|.+....+. ..+++|+|||+..
T Consensus 145 iN~S~G~~~~~-----~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~----- 214 (291)
T cd07483 145 INMSFGKSFSP-----NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSK----- 214 (291)
T ss_pred EEeCCCCCCCC-----ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccc-----
Confidence 99999965322 12467888999999999999999999864321110 1122333332110
Q ss_pred eeEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccC
Q 003446 371 GSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYN 450 (819)
Q Consensus 371 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~ 450 (819)
T Consensus 215 -------------------------------------------------------------------------------- 214 (291)
T cd07483 215 -------------------------------------------------------------------------------- 214 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeec
Q 003446 451 QTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIG 530 (819)
Q Consensus 451 g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (819)
T Consensus 215 -------------------------------------------------------------------------------- 214 (291)
T cd07483 215 -------------------------------------------------------------------------------- 214 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHH
Q 003446 531 EGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAG 610 (819)
Q Consensus 531 ~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG 610 (819)
......++.||++|+. +|||.|||.+|+++.+ ++.|..++|||||||||||
T Consensus 215 -------~~~~~~~~~~Sn~G~~------------~vdi~APG~~i~s~~~----------~~~~~~~sGTS~AaP~vaG 265 (291)
T cd07483 215 -------KYENNLVANFSNYGKK------------NVDVFAPGERIYSTTP----------DNEYETDSGTSMAAPVVSG 265 (291)
T ss_pred -------cCCcccccccCCCCCC------------ceEEEeCCCCeEeccC----------cCCeEeeccHHHHHHHHHH
Confidence 0001247889999974 3499999999999873 4589999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhccc
Q 003446 611 IAALIKQHNPSWTPTMIASAISSTAT 636 (819)
Q Consensus 611 ~aALl~q~~P~~sp~~ik~~L~~TA~ 636 (819)
++|||+|++|+|++.|||++|++||.
T Consensus 266 ~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 266 VAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999984
No 11
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-44 Score=390.22 Aligned_cols=288 Identities=37% Similarity=0.512 Sum_probs=217.2
Q ss_pred CCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccC---CCCCCCCC
Q 003446 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLN---TSVDFLSP 230 (819)
Q Consensus 154 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~---~~~~~~~~ 230 (819)
|+||+|||||+||+++||+|.+.. +.++++..+++|........... ........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG----------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASA 58 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC----------------------CCCCceeeeeECccCCCCcccccccccccccCCC
Confidence 899999999999999999999651 12345666666654311100000 00011224
Q ss_pred CCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCC
Q 003446 231 FDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGVDILTLSIGPD 309 (819)
Q Consensus 231 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~ 309 (819)
.|..+|||||||+|+|...+. ..+.||||+|+|+.+|+++..+ +...+++++|+|+++++++|||||||..
T Consensus 59 ~~~~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~ 130 (295)
T cd07474 59 GDATGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSS 130 (295)
T ss_pred CCCCCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCC
Confidence 568899999999999885431 3467999999999999998554 7888999999999999999999999975
Q ss_pred CCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCc--ccCCcceEEEccccccceeeeeEEeCCCeEEeeecCC
Q 003446 310 EPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTV--VSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLS 387 (819)
Q Consensus 310 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~~ 387 (819)
... ..+.+..+++++.++|+++|+||||+|...... ++..+++|+|||+.....
T Consensus 131 ~~~-----~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~------------------- 186 (295)
T cd07474 131 VNG-----PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV------------------- 186 (295)
T ss_pred CCC-----CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc-------------------
Confidence 432 236788889999999999999999998765543 566889999998531000
Q ss_pred CCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCc
Q 003446 388 GPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGF 467 (819)
Q Consensus 388 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga 467 (819)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeecc
Q 003446 468 MGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRF 547 (819)
Q Consensus 468 ~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~F 547 (819)
........|
T Consensus 187 -----------------------------------------------------------------------~~~~~~~~~ 195 (295)
T cd07474 187 -----------------------------------------------------------------------AEADTVGPS 195 (295)
T ss_pred -----------------------------------------------------------------------CCCCceecc
Confidence 000123334
Q ss_pred ccc-CCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCCCHHH
Q 003446 548 SSR-GPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTM 626 (819)
Q Consensus 548 SS~-Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~ 626 (819)
+++ |+... ..+||||+|||++|++++... ++.|..++|||||||+|||++|||+|++|+|++++
T Consensus 196 ~s~~~~~~~-------~~~kpdv~apG~~i~~~~~~~--------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~ 260 (295)
T cd07474 196 SSRGPPTSD-------SAIKPDIVAPGVDIMSTAPGS--------GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQ 260 (295)
T ss_pred CCCCCCCCC-------CCcCCCEECCcCceEeeccCC--------CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHH
Confidence 444 45443 689999999999999998542 24799999999999999999999999999999999
Q ss_pred HHHHHHhcccccccCCCccccccccccccCCCCCccccccccccccc
Q 003446 627 IASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRA 673 (819)
Q Consensus 627 ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A 673 (819)
||++|++||++....+. ...++..+|+|+||+.+|
T Consensus 261 v~~~L~~tA~~~~~~~~------------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 261 IKAALMNTAKPLYDSDG------------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred HHHHHHhhCcccccCCC------------CcCChhccCcceeccccC
Confidence 99999999998765432 122456899999999987
No 12
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-45 Score=384.21 Aligned_cols=336 Identities=24% Similarity=0.355 Sum_probs=256.8
Q ss_pred CCCCCcEEEEEeCCCCccccCCCCcccccccchhhhhhhhhHHHHHHHHHHHhhccC---------------cccEEEEe
Q 003446 28 FAEERDIYLVLIEGEPLAFHGSDDKRRFDLNSDAYKGQTKRLMDSHDRILQSTLEIG---------------SYNKLYSF 92 (819)
Q Consensus 28 ~~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------~~~~~~~~ 92 (819)
....+++|||.|+..+ ..+.++.+.++++..|..-...+.... ..+..+..
T Consensus 76 ~~~~~~~YiV~f~~~~--------------~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i 141 (501)
T KOG1153|consen 76 EEALPSRYIVVFKPDA--------------SQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDI 141 (501)
T ss_pred hcccccceEEEeCCCc--------------cHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhccccccccc
Confidence 3456789999999554 234455666666666554332211111 13334444
Q ss_pred ee-eeeEEEEEcCHHHHHHHhcCCCceEEEeCccccccc-----cCCCCccCCCc---------ccccccCCCCCCCCCe
Q 003446 93 KY-TVNGFAVHLTPTQAKKLENAPQVKLVERDRRAKLMT-----SYTPQFLGLPQ---------GVWTQRGGDKNAGEGI 157 (819)
Q Consensus 93 ~~-~~ng~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~-----~~~~~~~g~~~---------~~w~~~~~~~~~G~gv 157 (819)
.. +|+|+...++.+.+..++..|-++.++++..++... ......|++.+ ..|...-..-..|+||
T Consensus 142 ~~~~~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gv 221 (501)
T KOG1153|consen 142 GGRVFRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGV 221 (501)
T ss_pred ccchhhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCe
Confidence 44 788899999999999999999999999998877654 22233455532 1233222223589999
Q ss_pred EEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCCCCCc
Q 003446 158 VIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHG 237 (819)
Q Consensus 158 ~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHG 237 (819)
..+|+||||+.+||||.++. .|. .| ++ +.....|++|||
T Consensus 222 taYv~DTGVni~H~dFegRa-------~wG-a~-----i~----------------------------~~~~~~D~nGHG 260 (501)
T KOG1153|consen 222 TAYVLDTGVNIEHPDFEGRA-------IWG-AT-----IP----------------------------PKDGDEDCNGHG 260 (501)
T ss_pred EEEEecccccccccccccce-------ecc-cc-----cC----------------------------CCCcccccCCCc
Confidence 99999999999999999981 221 11 00 013346899999
Q ss_pred cccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhC---------CCcEEEeCCC
Q 003446 238 SHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMD---------GVDILTLSIG 307 (819)
Q Consensus 238 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~---------g~dVIn~SlG 307 (819)
|||||+|++.. .|||.+++|+++||+.++| +..+++++++|++++. +..|.|||+|
T Consensus 261 TH~AG~I~sKt--------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlG 326 (501)
T KOG1153|consen 261 THVAGLIGSKT--------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLG 326 (501)
T ss_pred ceeeeeeeccc--------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecC
Confidence 99999999984 5999999999999999999 9999999999999987 4579999999
Q ss_pred CCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCC-CcccCCcceEEEccccccceeeeeEEeCCCeEEeeecC
Q 003446 308 PDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPS-TVVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGL 386 (819)
Q Consensus 308 ~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~ 386 (819)
+... -+++.|++.|.+.||++++||||+..+.+ +.|+.+..+|||||++..
T Consensus 327 g~~S--------~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~-------------------- 378 (501)
T KOG1153|consen 327 GFRS--------AALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN-------------------- 378 (501)
T ss_pred Cccc--------HHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc--------------------
Confidence 8643 58999999999999999999999998765 456778899999986311
Q ss_pred CCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcC
Q 003446 387 SGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLG 466 (819)
Q Consensus 387 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~G 466 (819)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeec
Q 003446 467 FMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSR 546 (819)
Q Consensus 467 a~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 546 (819)
+.++.
T Consensus 379 ---------------------------------------------------------------------------D~iA~ 383 (501)
T KOG1153|consen 379 ---------------------------------------------------------------------------DTIAF 383 (501)
T ss_pred ---------------------------------------------------------------------------cchhh
Confidence 36899
Q ss_pred ccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCC-----
Q 003446 547 FSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPS----- 621 (819)
Q Consensus 547 FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~----- 621 (819)
||+||+++ ||.|||++|+|+|.+.. ..-.++||||||+|||||++|.+++.+|.
T Consensus 384 FSN~G~CV-------------diFAPGv~IlSs~iGs~--------~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f 442 (501)
T KOG1153|consen 384 FSNWGKCV-------------DIFAPGVNILSSWIGSN--------NATAILSGTSMASPHVAGLAAYFLSLGPLPDSSF 442 (501)
T ss_pred hcCcccee-------------eeecCchhhhhhhhcCc--------cchheeecccccCcchhhhHHHhhhcCCCChHHh
Confidence 99999999 89999999999997543 36689999999999999999999999883
Q ss_pred ----CCHHHHHHHHHhccc
Q 003446 622 ----WTPTMIASAISSTAT 636 (819)
Q Consensus 622 ----~sp~~ik~~L~~TA~ 636 (819)
.+|.++|..+..-..
T Consensus 443 ~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 443 ANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hhccCChHHhhhhhhcccc
Confidence 378888877775443
No 13
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.9e-45 Score=379.34 Aligned_cols=226 Identities=27% Similarity=0.440 Sum_probs=183.9
Q ss_pred eEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCCCCC
Q 003446 157 IVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGH 236 (819)
Q Consensus 157 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 236 (819)
|+|||||||||.+||+|.++ ++..+++.. ..+.|..+|
T Consensus 1 V~VavIDsGvd~~hp~l~~~----------------------------~~~~~~~~~--------------~~~~~~~~H 38 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAV----------------------------VIARLFFAG--------------PGAPAPSAH 38 (239)
T ss_pred CEEEEEeCCCCCCCcccccC----------------------------ccccccCCC--------------CCCCCCCCC
Confidence 78999999999999999875 111111110 134567899
Q ss_pred ccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC----CCHHHHHHHHHHHHhCCCcEEEeCCCCCCCC
Q 003446 237 GSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV----GTLADVIAAIDQATMDGVDILTLSIGPDEPP 312 (819)
Q Consensus 237 GThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g----~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 312 (819)
||||||||+|.... ..||||+|+|+.+|++...+ ++..++++||+||++.|++|||||||+..
T Consensus 39 GT~vAgiia~~~~~-----------~~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-- 105 (239)
T cd05561 39 GTAVASLLAGAGAQ-----------RPGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-- 105 (239)
T ss_pred HHHHHHHHhCCCCC-----------CcccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--
Confidence 99999999997531 16999999999999998642 66788999999999999999999999642
Q ss_pred CCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCC-CCcccCCcceEEEccccccceeeeeEEeCCCeEEeeecCCCCCC
Q 003446 313 RDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAP-STVVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLSGPTC 391 (819)
Q Consensus 313 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 391 (819)
...++.+++++.++|++||+||||+|... ..+|+..+++|+|||++.+
T Consensus 106 ------~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~------------------------- 154 (239)
T cd05561 106 ------NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR------------------------- 154 (239)
T ss_pred ------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC-------------------------
Confidence 25788899999999999999999999753 3456667888888763210
Q ss_pred CCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEE
Q 003446 392 GRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFI 471 (819)
Q Consensus 392 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i 471 (819)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeecccccC
Q 003446 472 LIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRG 551 (819)
Q Consensus 472 ~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~FSS~G 551 (819)
+.++.||++|
T Consensus 155 ----------------------------------------------------------------------~~~~~~s~~g 164 (239)
T cd05561 155 ----------------------------------------------------------------------GRLYREANRG 164 (239)
T ss_pred ----------------------------------------------------------------------CCccccCCCC
Confidence 2456789999
Q ss_pred CCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003446 552 PDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAI 631 (819)
Q Consensus 552 p~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~ik~~L 631 (819)
+.. ||.|||.+|+++.+ ++.|..++|||||||||||++|||+|++| ++++|||++|
T Consensus 165 ~~~-------------di~ApG~~i~~~~~----------~~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L 220 (239)
T cd05561 165 AHV-------------DFAAPGVDVWVAAP----------GGGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARL 220 (239)
T ss_pred Ccc-------------eEEccccceecccC----------CCCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHH
Confidence 865 89999999999763 45899999999999999999999999999 9999999999
Q ss_pred HhcccccccCC
Q 003446 632 SSTATKYDNYG 642 (819)
Q Consensus 632 ~~TA~~~~~~g 642 (819)
++||+++...+
T Consensus 221 ~~ta~~~g~~~ 231 (239)
T cd05561 221 AATAKDLGPPG 231 (239)
T ss_pred HHHhhccCCCC
Confidence 99998775443
No 14
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.6e-44 Score=379.87 Aligned_cols=246 Identities=29% Similarity=0.364 Sum_probs=197.4
Q ss_pred CeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCC-CCCCC
Q 003446 156 GIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLS-PFDAV 234 (819)
Q Consensus 156 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~-~~d~~ 234 (819)
||+||||||||+++||+|... .+ ..+.++.+.++|.+.. .. ..|.+
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~--------~~-------------~~~~~i~~~~~~~~~~------------~~~~~~~~ 47 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFK--------HL-------------FKNLRILGEYDFVDNS------------NNTNYTDD 47 (261)
T ss_pred CCEEEEEccCCCccCcchhhh--------cc-------------ccCCceeeeecCccCC------------CCCCCCCC
Confidence 799999999999999999532 00 1234678888887641 22 35788
Q ss_pred CCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC---CCHHHHHHHHHHHHhCCCcEEEeCCCCCCC
Q 003446 235 GHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV---GTLADVIAAIDQATMDGVDILTLSIGPDEP 311 (819)
Q Consensus 235 gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~ 311 (819)
+|||||||||+|+.. +.+.||||+|+|+.+|+..... ....+++.|++|+.+.|++|||||||....
T Consensus 48 ~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~ 117 (261)
T cd07493 48 DHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTF 117 (261)
T ss_pred CchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCC
Confidence 999999999999753 2357999999999999876533 345678999999999999999999997654
Q ss_pred CCC--------ccccccHHHHHHHHHHhCCcEEEEeCCCCCCCC---CCcccCCcceEEEccccccceeeeeEEeCCCeE
Q 003446 312 PRD--------TITMLGIFDVLMLFARRAGVFVVQAAGNQGPAP---STVVSYSPWAVAAAACTTDRIYPGSLLLGNGLK 380 (819)
Q Consensus 312 ~~~--------~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~ 380 (819)
... .......+.++++++.++|+++|+||||+|... ...|+..+++|+|||...+
T Consensus 118 ~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~-------------- 183 (261)
T cd07493 118 DNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN-------------- 183 (261)
T ss_pred CCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC--------------
Confidence 311 111234678899999999999999999999863 4456677888888863210
Q ss_pred EeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHH
Q 003446 381 LGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVIN 460 (819)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~ 460 (819)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCC
Q 003446 461 TAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGR 540 (819)
Q Consensus 461 ~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (819)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCC
Q 003446 541 APIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNP 620 (819)
Q Consensus 541 ~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P 620 (819)
+.++.||++||+.+ +++||||+|||.+|++.. .++.|..++|||||||||||++|||+|++|
T Consensus 184 -~~~~~~S~~G~~~~-------~~~~pdi~a~G~~~~~~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p 245 (261)
T cd07493 184 -GNKASFSSIGPTAD-------GRLKPDVMALGTGIYVIN----------GDGNITYANGTSFSCPLIAGLIACLWQAHP 245 (261)
T ss_pred -CCCCccCCcCCCCC-------CCcCCceEecCCCeEEEc----------CCCcEEeeCcHHHHHHHHHHHHHHHHHHCC
Confidence 24678999999886 689999999999999854 245799999999999999999999999999
Q ss_pred CCCHHHHHHHHHhccc
Q 003446 621 SWTPTMIASAISSTAT 636 (819)
Q Consensus 621 ~~sp~~ik~~L~~TA~ 636 (819)
+|++.|||++|++||+
T Consensus 246 ~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 246 NWTNLQIKEAILKSAS 261 (261)
T ss_pred CCCHHHHHHHHHHhcC
Confidence 9999999999999984
No 15
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=6.6e-44 Score=378.37 Aligned_cols=247 Identities=34% Similarity=0.446 Sum_probs=194.3
Q ss_pred CCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCC
Q 003446 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDA 233 (819)
Q Consensus 154 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 233 (819)
|+||+|||||+||+++||+|.+.... |.. . ++...+.+. +.......|.|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~~~------~~~---~-----------~~~~~~~~~---------d~~~~~~~~~d~ 51 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKYRG------WGG---G-----------SADHDYNWF---------DPVGNTPLPYDD 51 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhcccc------cCC---C-----------Ccccccccc---------cCCCCCCCCCCC
Confidence 89999999999999999999986111 000 0 000000110 111112456788
Q ss_pred CCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHh------------CCCcE
Q 003446 234 VGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATM------------DGVDI 301 (819)
Q Consensus 234 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~------------~g~dV 301 (819)
.+|||||||||+|.... +...||||+|+|+.+|+++..++...+++++++|+++ .|++|
T Consensus 52 ~~HGT~vagii~g~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~I 122 (264)
T cd07481 52 NGHGTHTMGTMVGNDGD---------GQQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDV 122 (264)
T ss_pred CCchhhhhhheeecCCC---------CCceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeE
Confidence 99999999999987532 1237999999999999999877888899999999975 78999
Q ss_pred EEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCC---cccCCcceEEEccccccceeeeeEEeCCC
Q 003446 302 LTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPST---VVSYSPWAVAAAACTTDRIYPGSLLLGNG 378 (819)
Q Consensus 302 In~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVgAs~~~~~~~~~~~~~~g 378 (819)
||||||.... ....+..+++.+.++|++||+||||++..... .|+..+++|+|||++.
T Consensus 123 in~S~G~~~~------~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~------------- 183 (264)
T cd07481 123 INNSWGGPSG------DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR------------- 183 (264)
T ss_pred EEeCCCcCCC------CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC-------------
Confidence 9999997543 23567778889999999999999999875432 4566778888876321
Q ss_pred eEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHH
Q 003446 379 LKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAV 458 (819)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~ 458 (819)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeecc
Q 003446 459 INTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFE 538 (819)
Q Consensus 459 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (819)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHh
Q 003446 539 GRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQH 618 (819)
Q Consensus 539 ~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~ 618 (819)
.+.++.||++||... ++.||||+|||.+|+++++ ++.|..++|||||||+|||++|||+|+
T Consensus 184 --~~~~~~~S~~g~~~~-------~~~~~dv~ApG~~i~s~~~----------~~~~~~~~GTS~AaP~vaG~aAll~~~ 244 (264)
T cd07481 184 --NDVLADFSSRGPSTY-------GRIKPDISAPGVNIRSAVP----------GGGYGSSSGTSMAAPHVAGVAALLWSA 244 (264)
T ss_pred --CCCCccccCCCCCCC-------CCcCceEEECCCCeEEecC----------CCceEeeCcHHHHHHHHHHHHHHHHHh
Confidence 134678999999986 6899999999999999984 357999999999999999999999999
Q ss_pred CCC--CCHHHHHHHHHhccc
Q 003446 619 NPS--WTPTMIASAISSTAT 636 (819)
Q Consensus 619 ~P~--~sp~~ik~~L~~TA~ 636 (819)
+|+ ++++|||++|++||+
T Consensus 245 ~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 245 NPSLIGDVDATEAILTETAR 264 (264)
T ss_pred CCCCCCCHHHHHHHHHHhcC
Confidence 999 999999999999985
No 16
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=8.1e-43 Score=380.86 Aligned_cols=220 Identities=30% Similarity=0.331 Sum_probs=165.4
Q ss_pred CCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCC---CHHHHHHHHHHHHhCCCcEEEeCCC
Q 003446 231 FDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVG---TLADVIAAIDQATMDGVDILTLSIG 307 (819)
Q Consensus 231 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~---~~~~i~~ai~~a~~~g~dVIn~SlG 307 (819)
.|+++|||||||||||+..++ ..+.||||+|+|+++|+++...+ ...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 367899999999999985321 34689999999999999875432 2356899999999999999999999
Q ss_pred CCCCCCCccccccHHHHHHH-HHHhCCcEEEEeCCCCCCCCCCc--cc-CCcceEEEccccccceeeeeEEeCCCeEEee
Q 003446 308 PDEPPRDTITMLGIFDVLML-FARRAGVFVVQAAGNQGPAPSTV--VS-YSPWAVAAAACTTDRIYPGSLLLGNGLKLGG 383 (819)
Q Consensus 308 ~~~~~~~~~~~~~~~~~a~~-~a~~~Gi~vV~AAGN~g~~~~~~--~~-~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~ 383 (819)
........ ..+.+++. .+.++||++|+||||+|+...++ |+ ..+++|+|||+.......
T Consensus 254 ~~~~~~~~----~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~------------- 316 (412)
T cd04857 254 EATHWPNS----GRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMA------------- 316 (412)
T ss_pred cCCCCccc----hHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccc-------------
Confidence 86543211 12333343 44578999999999999876654 32 468999999864221000
Q ss_pred ecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHH
Q 003446 384 VGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAI 463 (819)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~ 463 (819)
..|.+
T Consensus 317 ------------~~y~~--------------------------------------------------------------- 321 (412)
T cd04857 317 ------------AEYSL--------------------------------------------------------------- 321 (412)
T ss_pred ------------ccccc---------------------------------------------------------------
Confidence 00000
Q ss_pred hcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCe
Q 003446 464 TLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPI 543 (819)
Q Consensus 464 ~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (819)
.....+.
T Consensus 322 -------------------------------------------------------------------------~~~~~~~ 328 (412)
T cd04857 322 -------------------------------------------------------------------------REKLPGN 328 (412)
T ss_pred -------------------------------------------------------------------------ccccCCc
Confidence 0001245
Q ss_pred eecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHH----hC
Q 003446 544 VSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQ----HN 619 (819)
Q Consensus 544 ~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~ 619 (819)
++.||||||+.+ +.+||||+|||+.|.|+-. . ....|..|+|||||||||||++|||++ .+
T Consensus 329 ~~~fSSrGP~~d-------G~~~pdI~APG~~I~s~p~-~-------~~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~ 393 (412)
T cd04857 329 QYTWSSRGPTAD-------GALGVSISAPGGAIASVPN-W-------TLQGSQLMNGTSMSSPNACGGIALLLSGLKAEG 393 (412)
T ss_pred cccccccCCccc-------CCcCceEEeCCCcEEEccc-C-------CCCCeEEecccHHHHHHHHHHHHHHHhhhhhcC
Confidence 899999999997 7999999999999988521 1 234789999999999999999999985 47
Q ss_pred CCCCHHHHHHHHHhccccc
Q 003446 620 PSWTPTMIASAISSTATKY 638 (819)
Q Consensus 620 P~~sp~~ik~~L~~TA~~~ 638 (819)
|+|+|.+||++|++||+++
T Consensus 394 ~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 394 IPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CCCCHHHHHHHHHHhCccC
Confidence 8999999999999999864
No 17
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-42 Score=369.83 Aligned_cols=257 Identities=35% Similarity=0.495 Sum_probs=203.4
Q ss_pred CCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCC
Q 003446 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDA 233 (819)
Q Consensus 154 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 233 (819)
|+||+|+|||+||+++||+|.+.... . +.+... ........|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~-----~-----------------------~~~~~~---------~~~~~~~~d~ 43 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR-----F-----------------------ADFVNT---------VNGRTTPYDD 43 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc-----c-----------------------cccccc---------ccCCCCCCCC
Confidence 89999999999999999999986110 0 000000 0112445677
Q ss_pred CCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhC----CCcEEEeCCCC
Q 003446 234 VGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMD----GVDILTLSIGP 308 (819)
Q Consensus 234 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~----g~dVIn~SlG~ 308 (819)
.+|||||||+|+|..... .+.+.||||+|+|+.+|+++..+ +..+++++||+|+++. +++|||||||.
T Consensus 44 ~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~ 116 (264)
T cd07487 44 NGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGA 116 (264)
T ss_pred CCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCC
Confidence 899999999999985421 13468999999999999999876 7788999999999998 99999999998
Q ss_pred CCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCC--CcccCCcceEEEccccccceeeeeEEeCCCeEEeeecC
Q 003446 309 DEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPS--TVVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGL 386 (819)
Q Consensus 309 ~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~ 386 (819)
.... ....+.+.++++++.++|++||+||||++.... ..|+..+++|+|||+..+..
T Consensus 117 ~~~~---~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------------ 175 (264)
T cd07487 117 PPDP---SYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------------ 175 (264)
T ss_pred CCCC---CCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC------------------
Confidence 6542 234578889999999999999999999998765 45667889999997532210
Q ss_pred CCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcC
Q 003446 387 SGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLG 466 (819)
Q Consensus 387 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~G 466 (819)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeec
Q 003446 467 FMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSR 546 (819)
Q Consensus 467 a~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 546 (819)
....++.
T Consensus 176 -------------------------------------------------------------------------~~~~~~~ 182 (264)
T cd07487 176 -------------------------------------------------------------------------HDDGISY 182 (264)
T ss_pred -------------------------------------------------------------------------CCccccc
Confidence 0013678
Q ss_pred ccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCCCHHH
Q 003446 547 FSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTM 626 (819)
Q Consensus 547 FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~ 626 (819)
||++||+.+ +++||||+|||++|+++.+..... ....++.|..++|||||||+|||++|||+|++|.+++.+
T Consensus 183 ~s~~G~~~~-------~~~~~di~apG~~i~~~~~~~~~~-~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ 254 (264)
T cd07487 183 FSSRGPTGD-------GRIKPDVVAPGENIVSCRSPGGNP-GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDE 254 (264)
T ss_pred cccCCCCCC-------CCcCCCEEccccceEecccccccc-CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHH
Confidence 999999986 699999999999999986543111 112345899999999999999999999999999999999
Q ss_pred HHHHHHhccc
Q 003446 627 IASAISSTAT 636 (819)
Q Consensus 627 ik~~L~~TA~ 636 (819)
||++|++||+
T Consensus 255 ik~~L~~tA~ 264 (264)
T cd07487 255 VKCILRDTAT 264 (264)
T ss_pred HHHHHHhhcC
Confidence 9999999984
No 18
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.3e-42 Score=369.15 Aligned_cols=162 Identities=24% Similarity=0.295 Sum_probs=123.3
Q ss_pred ccCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccch
Q 003446 136 FLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGA 215 (819)
Q Consensus 136 ~~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~ 215 (819)
.+++.+ +|+. +++|+||+||||||||+..|| |... .+.+ ++ .+..+
T Consensus 7 ~l~~~~-~~~~----G~~G~Gv~VaViDTGv~~~h~-~~~~--------~~~~---------------~~----~~~~~- 52 (298)
T cd07494 7 LLNATR-VHQR----GITGRGVRVAMVDTGFYAHPF-FESR--------GYQV---------------RV----VLAPG- 52 (298)
T ss_pred hcChhH-HHhc----CCCCCCcEEEEEeCCCcCCch-hhcC--------Cccc---------------ee----ecCCC-
Confidence 456555 7876 899999999999999999998 6654 1110 00 00000
Q ss_pred hhccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHH
Q 003446 216 QAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQAT 295 (819)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~ 295 (819)
......|++||||||||++ .||||+|+|+.+|++++ ..+++++||+||+
T Consensus 53 ----------~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~ 101 (298)
T cd07494 53 ----------ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAI 101 (298)
T ss_pred ----------CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHH
Confidence 1133567889999999864 48999999999999875 4567899999999
Q ss_pred hCCCcEEEeCCCCCCCCCC------ccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCCcceEEEccccc
Q 003446 296 MDGVDILTLSIGPDEPPRD------TITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTT 365 (819)
Q Consensus 296 ~~g~dVIn~SlG~~~~~~~------~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~ 365 (819)
+++++|||||||.....+. .....+.+++++++|.++|++||+||||++. .+|+..|++|+|||+..
T Consensus 102 ~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~ 174 (298)
T cd07494 102 SLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFV 174 (298)
T ss_pred hcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEec
Confidence 9999999999998643221 0112456889999999999999999999974 46888999999998643
No 19
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=5.6e-42 Score=365.43 Aligned_cols=260 Identities=29% Similarity=0.334 Sum_probs=197.4
Q ss_pred cccccCCCCCCCCCeEEEEecceeccCCCCCCCC-C-CCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccc
Q 003446 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANY-N-PFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVAT 220 (819)
Q Consensus 143 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~-~-~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~ 220 (819)
+|.. +++|+||+|+|||||||++||+|.+. . ..+.+ ....+.+..
T Consensus 2 aw~~----g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~~~----------------------~~~~~~~~~------- 48 (273)
T cd07485 2 AWEF----GTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDP----------------------AVNGYNFVP------- 48 (273)
T ss_pred cccc----ccCCCCcEEEEEeCCCCCCChhhccCCCCCCccc----------------------ccCCccccc-------
Confidence 6777 89999999999999999999999986 1 11110 000000000
Q ss_pred cCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCC
Q 003446 221 LNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGV 299 (819)
Q Consensus 221 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~ 299 (819)
+.........|..+|||||||||+|+........|.. ...|+||+|+|+.+|++...+ ...++++++|+|+++.|+
T Consensus 49 -~~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~ 125 (273)
T cd07485 49 -NVGDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGA 125 (273)
T ss_pred -ccCCcCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCC
Confidence 0000113445678999999999999754322111111 235799999999999999865 677889999999999999
Q ss_pred cEEEeCCCCCCCCCCccccccHHHHHHHHHHhC-------CcEEEEeCCCCCCCCCCcccCCcceEEEccccccceeeee
Q 003446 300 DILTLSIGPDEPPRDTITMLGIFDVLMLFARRA-------GVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGS 372 (819)
Q Consensus 300 dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~~~~~~~ 372 (819)
+|||||||.... ..+...+..+++.+.++ |++||+||||++......|+..+++|+||+++.+
T Consensus 126 ~Vin~S~g~~~~----~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~------ 195 (273)
T cd07485 126 VILQNSWGGTGG----GIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN------ 195 (273)
T ss_pred cEEEecCCCCCc----cccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC------
Confidence 999999997542 12345677888888888 9999999999998776667778889999864210
Q ss_pred EEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCc
Q 003446 373 LLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQT 452 (819)
Q Consensus 373 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~ 452 (819)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccc
Q 003446 453 STLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEG 532 (819)
Q Consensus 453 ~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (819)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCC-eEEEeecCCCCCCCCcCCCcceecccccchhhHHHHH
Q 003446 533 RVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGH-QIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGI 611 (819)
Q Consensus 533 ~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~-~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~ 611 (819)
+.++.||++|+.. ||+|||. .|+++++.... ...+.|..++|||||||+|||+
T Consensus 196 ---------~~~~~~S~~g~~~-------------~i~apG~~~i~~~~~~~~~----~~~~~~~~~sGTS~AaP~VaG~ 249 (273)
T cd07485 196 ---------DNKASFSNYGRWV-------------DIAAPGVGTILSTVPKLDG----DGGGNYEYLSGTSMAAPHVSGV 249 (273)
T ss_pred ---------CCcCccccCCCce-------------EEEeCCCCccccccccccC----CCCCCeEeeccHHHHHHHHHHH
Confidence 2456899999876 8999999 99988764321 1234799999999999999999
Q ss_pred HHHHHHhCCC-CCHHHHHHHHHhc
Q 003446 612 AALIKQHNPS-WTPTMIASAISST 634 (819)
Q Consensus 612 aALl~q~~P~-~sp~~ik~~L~~T 634 (819)
+|||+|++|. |+|+|||++|++|
T Consensus 250 aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 250 AALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhC
Confidence 9999999999 9999999999986
No 20
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-42 Score=373.05 Aligned_cols=261 Identities=25% Similarity=0.245 Sum_probs=187.2
Q ss_pred EEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCCCCCc
Q 003446 158 VIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHG 237 (819)
Q Consensus 158 ~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHG 237 (819)
+|||||||||.+||+|.+.. .....+... + ..+.|.+|||
T Consensus 2 ~VaviDtGi~~~hp~l~~~~----------------------------~~~~~~~~~-----------~-~~~~d~~gHG 41 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPAL----------------------------AEDDLDSDE-----------P-GWTADDLGHG 41 (291)
T ss_pred EEEEecCCCCCCChhhhhhh----------------------------ccccccccC-----------C-CCcCCCCCCh
Confidence 79999999999999999761 101111100 0 1156889999
Q ss_pred cccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-----CCHHHHHHHHHHHHhCC---CcEEEeCCCCC
Q 003446 238 SHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-----GTLADVIAAIDQATMDG---VDILTLSIGPD 309 (819)
Q Consensus 238 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-----~~~~~i~~ai~~a~~~g---~dVIn~SlG~~ 309 (819)
|||||||++.... .....|+||+|+|+.+|++...| ...+++++||+|+++.+ ++|||||||..
T Consensus 42 T~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~ 113 (291)
T cd04847 42 TAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSP 113 (291)
T ss_pred HHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCC
Confidence 9999999875421 12357999999999999999864 45678999999999853 48999999986
Q ss_pred CCCCCccccccHHHHHHH-HHHhCCcEEEEeCCCCCCCCCC------------cccCCcceEEEccccccceeeeeEEeC
Q 003446 310 EPPRDTITMLGIFDVLML-FARRAGVFVVQAAGNQGPAPST------------VVSYSPWAVAAAACTTDRIYPGSLLLG 376 (819)
Q Consensus 310 ~~~~~~~~~~~~~~~a~~-~a~~~Gi~vV~AAGN~g~~~~~------------~~~~~p~vitVgAs~~~~~~~~~~~~~ 376 (819)
...... ....+..+++ .+.++|++||+||||++..... .|+.++++|+|||++.+.....
T Consensus 114 ~~~~~~--~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~----- 186 (291)
T cd04847 114 LPIDDG--RPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITD----- 186 (291)
T ss_pred CCccCC--CCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCC-----
Confidence 543211 1124455554 4568999999999999987543 2456789999998754321000
Q ss_pred CCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchH
Q 003446 377 NGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLT 456 (819)
Q Consensus 377 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~ 456 (819)
| . . . +
T Consensus 187 ---------------------~-------------------------s----~--------------~------~----- 191 (291)
T cd04847 187 ---------------------R-------------------------A----R--------------Y------S----- 191 (291)
T ss_pred ---------------------c-------------------------c----c--------------c------c-----
Confidence 0 0 0 0 0
Q ss_pred HHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeee
Q 003446 457 AVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVAS 536 (819)
Q Consensus 457 ~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (819)
T Consensus 192 -------------------------------------------------------------------------------- 191 (291)
T cd04847 192 -------------------------------------------------------------------------------- 191 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCC--------CCCcCCCcceecccccchhhHH
Q 003446 537 FEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSAL--------DPMLTGCNFALLSGTSMATPHI 608 (819)
Q Consensus 537 ~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~--------~~~~~~~~y~~~sGTSMAaP~V 608 (819)
.......+.||||||... +.+||||+|||++|.+..+..... .....++.|..++|||||||||
T Consensus 192 -~~~~~~~~~fs~~Gp~~~-------~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~V 263 (291)
T cd04847 192 -AVGPAPAGATTSSGPGSP-------GPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLA 263 (291)
T ss_pred -ccccccCCCccccCCCCC-------CCcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHH
Confidence 000011334999999986 799999999999998865321100 0011345899999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 003446 609 AGIAALIKQHNPSWTPTMIASAISSTAT 636 (819)
Q Consensus 609 AG~aALl~q~~P~~sp~~ik~~L~~TA~ 636 (819)
||++|||+|++|+++|++||++|++||+
T Consensus 264 ag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 264 ARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999984
No 21
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4e-42 Score=368.88 Aligned_cols=263 Identities=31% Similarity=0.366 Sum_probs=192.0
Q ss_pred CeEEEEecceeccCCCCCCCCC-CCCCCCCC----CCCccc-cCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCC
Q 003446 156 GIVIGFVDTGINPSHPSFANYN-PFEPNISH----FSGDCE-TGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLS 229 (819)
Q Consensus 156 gv~VaVIDtGid~~Hp~f~~~~-~~~~~~~~----~~~~~~-~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 229 (819)
||+|||||||||++||+|.++. .++..+.. .++.-. .....+..+.+++.. .........
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--------------~~~~~~~~~ 66 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLPGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDV--------------PPGGFCGSG 66 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccccCcccccCcccccCCCCCCCCCCCcccccccccc--------------cccccccCC
Confidence 7999999999999999999872 22221110 000000 000000011111100 000111234
Q ss_pred CCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHH----------hCCC
Q 003446 230 PFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQAT----------MDGV 299 (819)
Q Consensus 230 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~----------~~g~ 299 (819)
..+..+|||||||||+|...++ ..+.||||+|+|+.+|+++..++..+++++|++|++ .+++
T Consensus 67 ~~~~~~HGT~vAgiiaa~~~~~--------~~~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~ 138 (285)
T cd07496 67 VSPSSWHGTHVAGTIAAVTNNG--------VGVAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPA 138 (285)
T ss_pred CCCCCCCHHHHHHHHhCcCCCC--------CCceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCC
Confidence 4567899999999999975421 235799999999999999987788899999999998 4578
Q ss_pred cEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCC-CCcccCCcceEEEccccccceeeeeEEeCCC
Q 003446 300 DILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAP-STVVSYSPWAVAAAACTTDRIYPGSLLLGNG 378 (819)
Q Consensus 300 dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgAs~~~~~~~~~~~~~~g 378 (819)
+|||||||..... ...+..+++.+.++|++||+||||++... ...|+..+++|+|||++.+
T Consensus 139 ~Iin~S~G~~~~~------~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------ 200 (285)
T cd07496 139 KVINLSLGGDGAC------SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR------------ 200 (285)
T ss_pred eEEEeCCCCCCCC------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC------------
Confidence 9999999975431 35788899999999999999999999876 5567778889999874211
Q ss_pred eEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHH
Q 003446 379 LKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAV 458 (819)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~ 458 (819)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeecc
Q 003446 459 INTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFE 538 (819)
Q Consensus 459 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (819)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCC-----CCCcCCCcceecccccchhhHHHHHHH
Q 003446 539 GRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSAL-----DPMLTGCNFALLSGTSMATPHIAGIAA 613 (819)
Q Consensus 539 ~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~-----~~~~~~~~y~~~sGTSMAaP~VAG~aA 613 (819)
+.++.||++|+.. ||+|||++|.++....... ........|..++|||||||+|||++|
T Consensus 201 ---~~~~~~S~~g~~v-------------di~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aA 264 (285)
T cd07496 201 ---GQRASYSNYGPAV-------------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAA 264 (285)
T ss_pred ---CCcccccCCCCCC-------------CEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHH
Confidence 2467899999976 8999999999887543210 111234578999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHhc
Q 003446 614 LIKQHNPSWTPTMIASAISST 634 (819)
Q Consensus 614 Ll~q~~P~~sp~~ik~~L~~T 634 (819)
||+|++|+|++++||++|++|
T Consensus 265 lv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 265 LMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred HHHHhCCCCCHHHHHHHHHhC
Confidence 999999999999999999976
No 22
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=1.1e-41 Score=359.72 Aligned_cols=228 Identities=33% Similarity=0.482 Sum_probs=191.9
Q ss_pred CCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCC
Q 003446 151 KNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSP 230 (819)
Q Consensus 151 ~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 230 (819)
+++|+||+|||||+||+++||+|.++ +...+++... ...
T Consensus 21 ~~~G~gv~VaViDsGi~~~h~~~~~~----------------------------~~~~~~~~~~-------------~~~ 59 (255)
T cd04077 21 SSTGSGVDVYVLDTGIRTTHVEFGGR----------------------------AIWGADFVGG-------------DPD 59 (255)
T ss_pred CCCCCCcEEEEEcCCCCCCChhhhCC----------------------------eeeeeecCCC-------------CCC
Confidence 69999999999999999999999875 2223333321 225
Q ss_pred CCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCC-----CcEEEe
Q 003446 231 FDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDG-----VDILTL 304 (819)
Q Consensus 231 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g-----~dVIn~ 304 (819)
.|..+|||||||||+++. .||||+|+|+.+|+++..+ +..++++++++|++++. ++||||
T Consensus 60 ~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~ 125 (255)
T cd04077 60 SDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANM 125 (255)
T ss_pred CCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEe
Confidence 678899999999999863 5999999999999999876 77889999999999874 899999
Q ss_pred CCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCC-CCcccCCcceEEEccccccceeeeeEEeCCCeEEee
Q 003446 305 SIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAP-STVVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGG 383 (819)
Q Consensus 305 SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~ 383 (819)
|||... ...+..+++++.++|+++|+||||+|... ...|+..+++|+|||++.+
T Consensus 126 S~g~~~--------~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~----------------- 180 (255)
T cd04077 126 SLGGGA--------STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD----------------- 180 (255)
T ss_pred CCCCCC--------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-----------------
Confidence 999753 25788889999999999999999999765 3556678899999874211
Q ss_pred ecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHH
Q 003446 384 VGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAI 463 (819)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~ 463 (819)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCe
Q 003446 464 TLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPI 543 (819)
Q Consensus 464 ~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (819)
+.
T Consensus 181 ------------------------------------------------------------------------------~~ 182 (255)
T cd04077 181 ------------------------------------------------------------------------------DA 182 (255)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 23
Q ss_pred eecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCCC
Q 003446 544 VSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWT 623 (819)
Q Consensus 544 ~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~s 623 (819)
++.||++||.. ||+|||.+|.++... .++.|..++|||||||+|||++|||+|++|+++
T Consensus 183 ~~~~S~~g~~~-------------~i~apG~~i~~~~~~--------~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~ 241 (255)
T cd04077 183 RASFSNYGSCV-------------DIFAPGVDILSAWIG--------SDTATATLSGTSMAAPHVAGLAAYLLSLGPDLS 241 (255)
T ss_pred ccCcccCCCCC-------------cEEeCCCCeEecccC--------CCCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCC
Confidence 57789999876 899999999998753 134899999999999999999999999999999
Q ss_pred HHHHHHHHHhcccc
Q 003446 624 PTMIASAISSTATK 637 (819)
Q Consensus 624 p~~ik~~L~~TA~~ 637 (819)
+++||++|++||++
T Consensus 242 ~~~v~~~L~~tA~~ 255 (255)
T cd04077 242 PAEVKARLLNLATK 255 (255)
T ss_pred HHHHHHHHHhhccC
Confidence 99999999999974
No 23
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=1.5e-41 Score=360.02 Aligned_cols=246 Identities=34% Similarity=0.501 Sum_probs=202.3
Q ss_pred CCccCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEccc
Q 003446 134 PQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSA 213 (819)
Q Consensus 134 ~~~~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~ 213 (819)
...++.+. +|.. + +|+||+|+|||+||+++||+|... ++...+++.+
T Consensus 13 ~~~~~~~~-~~~~----~-~G~gv~I~viDsGi~~~h~~l~~~---------------------------~~~~~~~~~~ 59 (260)
T cd07484 13 LDQIGAPK-AWDI----T-GGSGVTVAVVDTGVDPTHPDLLKV---------------------------KFVLGYDFVD 59 (260)
T ss_pred ccccChHH-HHhh----c-CCCCCEEEEEeCCCCCCCcccccC---------------------------CcccceeccC
Confidence 34455554 8887 3 999999999999999999998543 2223333332
Q ss_pred chhhccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHH
Q 003446 214 GAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAID 292 (819)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~ 292 (819)
. ...+.|..+|||||||||++..... ..+.|+||+|+|+.+|+++..+ +...+++++|+
T Consensus 60 ~------------~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~ 119 (260)
T cd07484 60 N------------DSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANGSGSLADIANGIR 119 (260)
T ss_pred C------------CCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCCCcCHHHHHHHHH
Confidence 1 1335678899999999999875322 2357999999999999998866 77889999999
Q ss_pred HHHhCCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCCcceEEEccccccceeeee
Q 003446 293 QATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGS 372 (819)
Q Consensus 293 ~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~~~~~~~ 372 (819)
++++.|++|||||||... ....+.++++.+.++|++||+||||+|.....+|+..+++|+||+.+.+
T Consensus 120 ~a~~~~~~iin~S~g~~~-------~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------ 186 (260)
T cd07484 120 YAADKGAKVINLSLGGGL-------GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD------ 186 (260)
T ss_pred HHHHCCCeEEEecCCCCC-------CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC------
Confidence 999999999999999753 3367888999999999999999999999887888888999999864211
Q ss_pred EEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCc
Q 003446 373 LLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQT 452 (819)
Q Consensus 373 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~ 452 (819)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccc
Q 003446 453 STLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEG 532 (819)
Q Consensus 453 ~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (819)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHH
Q 003446 533 RVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIA 612 (819)
Q Consensus 533 ~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~a 612 (819)
+.++.||++|+.. |+.|||.+|+++.+ .+.|..++|||||||+|||++
T Consensus 187 ---------~~~~~~s~~g~~~-------------~~~apG~~i~~~~~----------~~~~~~~~GTS~Aap~vag~~ 234 (260)
T cd07484 187 ---------DKRASFSNYGKWV-------------DVSAPGGGILSTTP----------DGDYAYMSGTSMATPHVAGVA 234 (260)
T ss_pred ---------CCcCCcCCCCCCc-------------eEEeCCCCcEeecC----------CCCEEEeeeHHHHHHHHHHHH
Confidence 2356788999765 89999999999874 347999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHhccccc
Q 003446 613 ALIKQHNPSWTPTMIASAISSTATKY 638 (819)
Q Consensus 613 ALl~q~~P~~sp~~ik~~L~~TA~~~ 638 (819)
|||+|++| |++.+||++|++||+++
T Consensus 235 Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 235 ALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred HHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 99999999 99999999999999865
No 24
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-41 Score=358.27 Aligned_cols=253 Identities=28% Similarity=0.418 Sum_probs=189.3
Q ss_pred CeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCCCC
Q 003446 156 GIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVG 235 (819)
Q Consensus 156 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g 235 (819)
||+|||||+|||++||+|.+.. ....+|... ...+.....|..+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~----------------------------~~~~~~~~~--------~~~~~~~~~d~~~ 44 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV----------------------------AQWADFDEN--------RRISATEVFDAGG 44 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc----------------------------CCceeccCC--------CCCCCCCCCCCCC
Confidence 7999999999999999998751 111112110 0011234557789
Q ss_pred CccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCCc
Q 003446 236 HGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVDILTLSIGPDEPPRDT 315 (819)
Q Consensus 236 HGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~ 315 (819)
|||||||||+|+... +...||||+|+|+.+|++...++..++++++|+|+++.+++|||||||.....
T Consensus 45 HGT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--- 112 (254)
T cd07490 45 HGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--- 112 (254)
T ss_pred cHHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC---
Confidence 999999999998541 23579999999999999988777889999999999999999999999976432
Q ss_pred cccccHHHHHHHHHHh-CCcEEEEeCCCCCCCCCCcccCCcceEEEccccccceeeeeEEeCCCeEEeeecCCCCCCCCC
Q 003446 316 ITMLGIFDVLMLFARR-AGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLSGPTCGRP 394 (819)
Q Consensus 316 ~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 394 (819)
.+.+..+++.+.+ +|++||+||||+|......|+..+++|+|||++.+.....
T Consensus 113 ---~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~----------------------- 166 (254)
T cd07490 113 ---EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAW----------------------- 166 (254)
T ss_pred ---CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccC-----------------------
Confidence 3456666666655 6999999999999887777888999999998654321000
Q ss_pred CceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEe
Q 003446 395 LFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIA 474 (819)
Q Consensus 395 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n 474 (819)
...+
T Consensus 167 --------------------------~s~~-------------------------------------------------- 170 (254)
T cd07490 167 --------------------------FSSF-------------------------------------------------- 170 (254)
T ss_pred --------------------------ccCC--------------------------------------------------
Confidence 0000
Q ss_pred cCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeecccccCCCC
Q 003446 475 NSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGPDF 554 (819)
Q Consensus 475 ~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~FSS~Gp~~ 554 (819)
........+.+|..
T Consensus 171 ------------------------------------------------------------------g~~~~~~~~~~~~~ 184 (254)
T cd07490 171 ------------------------------------------------------------------GSSGASLVSAPDSP 184 (254)
T ss_pred ------------------------------------------------------------------cccccccccCCCCC
Confidence 00011122333333
Q ss_pred CCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 003446 555 TDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISST 634 (819)
Q Consensus 555 ~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~ik~~L~~T 634 (819)
.. ...||||.|||.+|+++..... .++.|..++|||||||+|||++|||+|++|+|++.+||++|++|
T Consensus 185 ~~------~~~~~d~~apG~~i~~~~~~~~------~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~t 252 (254)
T cd07490 185 PD------EYTKPDVAAPGVDVYSARQGAN------GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTET 252 (254)
T ss_pred cc------CCcCceEEeccCCeEccccCCC------CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 21 4689999999999999653211 34589999999999999999999999999999999999999999
Q ss_pred cc
Q 003446 635 AT 636 (819)
Q Consensus 635 A~ 636 (819)
|+
T Consensus 253 A~ 254 (254)
T cd07490 253 AY 254 (254)
T ss_pred cC
Confidence 84
No 25
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.3e-41 Score=358.47 Aligned_cols=147 Identities=22% Similarity=0.258 Sum_probs=106.3
Q ss_pred CCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhh
Q 003446 138 GLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQA 217 (819)
Q Consensus 138 g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~ 217 (819)
++++ +|+.. +..|+||+|+|||+|||.+||||.++.- . ..
T Consensus 3 ~~~~-aw~~~---~g~G~gV~VaviDtGid~~Hpdl~~~~~-----~--------------------------~~----- 42 (277)
T cd04843 3 NARY-AWTKP---GGSGQGVTFVDIEQGWNLNHEDLVGNGI-----T--------------------------LI----- 42 (277)
T ss_pred ChHH-HHHhc---CCCCCcEEEEEecCCCCCCChhhccccc-----c--------------------------cc-----
Confidence 4444 78874 2458999999999999999999997610 0 00
Q ss_pred ccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHh-
Q 003446 218 VATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATM- 296 (819)
Q Consensus 218 ~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~- 296 (819)
....+.|+++|||||||||+|..+ + ..+.||||+|+|+.+|+++ .++++++|+||++
T Consensus 43 --------~~~~~~d~~gHGT~VAGiIaa~~n------~---~G~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~ 100 (277)
T cd04843 43 --------SGLTDQADSDHGTAVLGIIVAKDN------G---IGVTGIAHGAQAAVVSSTR-----VSNTADAILDAADY 100 (277)
T ss_pred --------CCCCCCCCCCCcchhheeeeeecC------C---CceeeeccCCEEEEEEecC-----CCCHHHHHHHHHhc
Confidence 001145778999999999998642 1 1257999999999999986 2345666666666
Q ss_pred ---CCCcEEEeCCCCCCCCCC--ccccccHHHHHHHHHHhCCcEEEEeCCCCCCC
Q 003446 297 ---DGVDILTLSIGPDEPPRD--TITMLGIFDVLMLFARRAGVFVVQAAGNQGPA 346 (819)
Q Consensus 297 ---~g~dVIn~SlG~~~~~~~--~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~ 346 (819)
.++.+||||||....... .....+.+..++++|.++|+++|+||||++..
T Consensus 101 ~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~ 155 (277)
T cd04843 101 LSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQD 155 (277)
T ss_pred cCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCcc
Confidence 345679999998642210 01234566778999999999999999999874
No 26
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=1.3e-40 Score=359.39 Aligned_cols=277 Identities=26% Similarity=0.293 Sum_probs=201.4
Q ss_pred CCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCC
Q 003446 150 DKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLS 229 (819)
Q Consensus 150 ~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 229 (819)
.+++|+||+|||||||||++||+|.+.... ...+.++++.....+.. .
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~-----------------~~~~~~~~~~~~~~~~~---------------~ 49 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN-----------------KTNLFHRKIVRYDSLSD---------------T 49 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC-----------------cCccCcccEEEeeccCC---------------C
Confidence 379999999999999999999999875110 01122344544443332 1
Q ss_pred CCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC--CCHHHHHHHHHHHHhCCCcEEEeCCC
Q 003446 230 PFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV--GTLADVIAAIDQATMDGVDILTLSIG 307 (819)
Q Consensus 230 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIn~SlG 307 (819)
..|..+|||||||||+|....... ...+.||||+|+|+.+|+++..+ ....++..+++++.+.+++|||||||
T Consensus 50 ~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G 124 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWG 124 (293)
T ss_pred CCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCC
Confidence 227899999999999998643210 11468999999999999998765 55667899999999999999999999
Q ss_pred CCCCCCCccccccHHHHHHHHHH-h-CCcEEEEeCCCCCCCCC---CcccCCcceEEEccccccceeeeeEEeCCCeEEe
Q 003446 308 PDEPPRDTITMLGIFDVLMLFAR-R-AGVFVVQAAGNQGPAPS---TVVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLG 382 (819)
Q Consensus 308 ~~~~~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~ 382 (819)
..... .......++.++. + +|++||+||||+|.... ..|+..+++|+|||++......
T Consensus 125 ~~~~~-----~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~------------ 187 (293)
T cd04842 125 SPVNN-----GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN------------ 187 (293)
T ss_pred CCCcc-----ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc------------
Confidence 86431 1133444444443 3 79999999999998765 5677889999999875432100
Q ss_pred eecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHH
Q 003446 383 GVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTA 462 (819)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~ 462 (819)
...|..
T Consensus 188 --------------------------------------~~~~~~------------------------------------ 193 (293)
T cd04842 188 --------------------------------------GEGGLG------------------------------------ 193 (293)
T ss_pred --------------------------------------cccccc------------------------------------
Confidence 000000
Q ss_pred HhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCC
Q 003446 463 ITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAP 542 (819)
Q Consensus 463 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (819)
.....+
T Consensus 194 --------------------------------------------------------------------------~~~~~~ 199 (293)
T cd04842 194 --------------------------------------------------------------------------QSDNSD 199 (293)
T ss_pred --------------------------------------------------------------------------ccCCCC
Confidence 001124
Q ss_pred eeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhC---
Q 003446 543 IVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHN--- 619 (819)
Q Consensus 543 ~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~--- 619 (819)
.++.||++||+.. +++||||+|||++|+++...... ........|...+|||||||||||++|||+|++
T Consensus 200 ~~~~~S~~G~~~~-------~~~~pdv~ApG~~i~~~~~~~~~-~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~ 271 (293)
T cd04842 200 TVASFSSRGPTYD-------GRIKPDLVAPGTGILSARSGGGG-IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDG 271 (293)
T ss_pred ccccccCcCCCCC-------CCcCCCEECCCCCeEeccCCCCC-CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999986 69999999999999999754210 011134579999999999999999999999985
Q ss_pred --C---CCCHHHHHHHHHhccc
Q 003446 620 --P---SWTPTMIASAISSTAT 636 (819)
Q Consensus 620 --P---~~sp~~ik~~L~~TA~ 636 (819)
| .+++.++|++|++||+
T Consensus 272 ~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 272 YYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CcCCCcCcCHHHHHHHHHhcCC
Confidence 4 6677899999999985
No 27
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.1e-41 Score=360.19 Aligned_cols=147 Identities=30% Similarity=0.476 Sum_probs=110.0
Q ss_pred CCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCC
Q 003446 151 KNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSP 230 (819)
Q Consensus 151 ~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 230 (819)
+++|+||+|||||+|||.+||+|.+.. +..++|.+. ..+
T Consensus 4 ~~tG~gv~VaVlDsGv~~~hp~l~~~~----------------------------~~~~~~~~~-------------~~~ 42 (297)
T cd07480 4 PFTGAGVRVAVLDTGIDLTHPAFAGRD----------------------------ITTKSFVGG-------------EDV 42 (297)
T ss_pred CCCCCCCEEEEEcCCCCCCChhhcCCc----------------------------ccCcccCCC-------------CCC
Confidence 699999999999999999999999761 111122211 224
Q ss_pred CCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCC
Q 003446 231 FDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGVDILTLSIGPD 309 (819)
Q Consensus 231 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~ 309 (819)
.|.++|||||||||+|+... +...||||+|+|+.+|++...+ +...++++||+||++.|++|||||||..
T Consensus 43 ~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~ 113 (297)
T cd07480 43 QDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGAD 113 (297)
T ss_pred CCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCC
Confidence 67899999999999997542 2246999999999999998755 6777899999999999999999999985
Q ss_pred CC------CCCccccccHHHHHHHHH---------------HhCCcEEEEeCCCCCCCC
Q 003446 310 EP------PRDTITMLGIFDVLMLFA---------------RRAGVFVVQAAGNQGPAP 347 (819)
Q Consensus 310 ~~------~~~~~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~ 347 (819)
.. +.........++.+.+.+ .++|++||+||||++...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~ 172 (297)
T cd07480 114 FPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRP 172 (297)
T ss_pred CcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCC
Confidence 41 111111223344444444 789999999999998643
No 28
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.3e-41 Score=350.43 Aligned_cols=240 Identities=28% Similarity=0.414 Sum_probs=190.2
Q ss_pred eEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCCCCC
Q 003446 157 IVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGH 236 (819)
Q Consensus 157 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 236 (819)
|+|||||+||+++||+|.+. .+ +...+++.. +...+.|..+|
T Consensus 1 V~VaviDsGi~~~hp~l~~~---~~-----------------------~~~~~~~~~------------~~~~~~~~~~H 42 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGK---PK-----------------------LVPGWNFVS------------NNDPTSDIDGH 42 (242)
T ss_pred CEEEEecCCCCCCChhhccC---cC-----------------------ccCCccccC------------CCCCCCCCCCC
Confidence 68999999999999999974 00 111111111 11234678999
Q ss_pred ccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCCc
Q 003446 237 GSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGVDILTLSIGPDEPPRDT 315 (819)
Q Consensus 237 GThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~ 315 (819)
||||||||+|+..+. ..+.||||+|+|+.+|++...+ +..+++.++++|+++.+++|||||||.....
T Consensus 43 GT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--- 111 (242)
T cd07498 43 GTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDST--- 111 (242)
T ss_pred HHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCC---
Confidence 999999999975321 2357999999999999998765 6788899999999999999999999976432
Q ss_pred cccccHHHHHHHHHHh-CCcEEEEeCCCCCCCCCCcccCCcceEEEccccccceeeeeEEeCCCeEEeeecCCCCCCCCC
Q 003446 316 ITMLGIFDVLMLFARR-AGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLSGPTCGRP 394 (819)
Q Consensus 316 ~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 394 (819)
..+...++.+++.+.+ +|+++|+||||+|......++..+++|+|||++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~---------------------------- 163 (242)
T cd07498 112 ESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN---------------------------- 163 (242)
T ss_pred chHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC----------------------------
Confidence 2345678888889988 99999999999998776677888999999974211
Q ss_pred CceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEe
Q 003446 395 LFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIA 474 (819)
Q Consensus 395 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n 474 (819)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeecccccCCCC
Q 003446 475 NSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGPDF 554 (819)
Q Consensus 475 ~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~FSS~Gp~~ 554 (819)
+.++.||+|||..
T Consensus 164 -------------------------------------------------------------------~~~~~~s~~g~~~ 176 (242)
T cd07498 164 -------------------------------------------------------------------DARASYSNYGNYV 176 (242)
T ss_pred -------------------------------------------------------------------CCccCcCCCCCCe
Confidence 2357889999876
Q ss_pred CCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 003446 555 TDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISST 634 (819)
Q Consensus 555 ~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~ik~~L~~T 634 (819)
|++|||+++.+....... .....++.|..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 177 -------------~~~apG~~~~~~~~~~~~-~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 177 -------------DLVAPGVGIWTTGTGRGS-AGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred -------------EEEeCcCCcccCCccccc-cccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 899999999887543211 111235678999999999999999999999999999999999999975
No 29
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.3e-40 Score=348.72 Aligned_cols=249 Identities=31% Similarity=0.374 Sum_probs=188.2
Q ss_pred CCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCc---cccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCC
Q 003446 155 EGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGD---CETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPF 231 (819)
Q Consensus 155 ~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~---~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 231 (819)
+||+|||||||||++||+|.++ .|... +..+.+......-++ ...++|. .+..++.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------~~~~~~~ 60 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN--------MWVNPGEIPGNGIDDDGNGYVDD-IYGWNFV------------NNDNDPM 60 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc--------cccCcccccccCcccCCCCcccC-CCccccc------------CCCCCCC
Confidence 6899999999999999999987 23211 111111000000000 1111111 1224567
Q ss_pred CCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCCC
Q 003446 232 DAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGVDILTLSIGPDE 310 (819)
Q Consensus 232 d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 310 (819)
|..+|||||||||+|..... ..+.||||+|+|+.+|++...+ +...+++++++|+++.+++|||+|||...
T Consensus 61 d~~~HGT~va~ii~~~~~~~--------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~ 132 (259)
T cd07473 61 DDNGHGTHVAGIIGAVGNNG--------IGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGG 132 (259)
T ss_pred CCCCcHHHHHHHHHCcCCCC--------CceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCC
Confidence 88999999999999975422 2357999999999999999877 78889999999999999999999999753
Q ss_pred CCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCC---Cccc--CCcceEEEccccccceeeeeEEeCCCeEEeeec
Q 003446 311 PPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPS---TVVS--YSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVG 385 (819)
Q Consensus 311 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~--~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~ 385 (819)
. ...+..+++++.++|++||+||||+|.... .++. ..+++|+||+.+.
T Consensus 133 ~-------~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~-------------------- 185 (259)
T cd07473 133 P-------SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS-------------------- 185 (259)
T ss_pred C-------CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC--------------------
Confidence 2 367888889999999999999999987532 2232 2356666665311
Q ss_pred CCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhc
Q 003446 386 LSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITL 465 (819)
Q Consensus 386 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~ 465 (819)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeee
Q 003446 466 GFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVS 545 (819)
Q Consensus 466 Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 545 (819)
.+.++
T Consensus 186 ---------------------------------------------------------------------------~~~~~ 190 (259)
T cd07473 186 ---------------------------------------------------------------------------NDALA 190 (259)
T ss_pred ---------------------------------------------------------------------------CCCcC
Confidence 12456
Q ss_pred cccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCCCHH
Q 003446 546 RFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPT 625 (819)
Q Consensus 546 ~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~ 625 (819)
.||++||.. ||+.|||.++++.. .++.|..++|||||||+|||++|||+|++|.++++
T Consensus 191 ~~s~~g~~~------------~~~~apG~~~~~~~----------~~~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~ 248 (259)
T cd07473 191 SFSNYGKKT------------VDLAAPGVDILSTS----------PGGGYGYMSGTSMATPHVAGAAALLLSLNPNLTAA 248 (259)
T ss_pred cccCCCCCC------------cEEEeccCCeEecc----------CCCcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHH
Confidence 689999753 49999999999965 34589999999999999999999999999999999
Q ss_pred HHHHHHHhccc
Q 003446 626 MIASAISSTAT 636 (819)
Q Consensus 626 ~ik~~L~~TA~ 636 (819)
+||++|++||+
T Consensus 249 ~v~~~L~~tA~ 259 (259)
T cd07473 249 QIKDAILSSAD 259 (259)
T ss_pred HHHHHHHHhCC
Confidence 99999999984
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=6.2e-40 Score=340.95 Aligned_cols=226 Identities=35% Similarity=0.519 Sum_probs=185.8
Q ss_pred CeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCCCC
Q 003446 156 GIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVG 235 (819)
Q Consensus 156 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g 235 (819)
||+|||||+||+++||+|.+. +...++|... ....+.|..+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~----------------------------~~~~~~~~~~-----------~~~~~~~~~~ 41 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN----------------------------IVGGANFTGD-----------DNNDYQDGNG 41 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc----------------------------ccCcccccCC-----------CCCCCCCCCC
Confidence 799999999999999999875 1112222211 0024457789
Q ss_pred CccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCC
Q 003446 236 HGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGVDILTLSIGPDEPPRD 314 (819)
Q Consensus 236 HGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~ 314 (819)
|||||||+|++.... ..+.|+||+|+|+.+|+++..+ +...+++++++|+++.|++|||||||....
T Consensus 42 HGT~vA~ii~~~~~~---------~~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~~--- 109 (229)
T cd07477 42 HGTHVAGIIAALDNG---------VGVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSD--- 109 (229)
T ss_pred CHHHHHHHHhcccCC---------CccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCCC---
Confidence 999999999997532 1357999999999999999876 677899999999999999999999997532
Q ss_pred ccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCc--ccCCcceEEEccccccceeeeeEEeCCCeEEeeecCCCCCCC
Q 003446 315 TITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTV--VSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLSGPTCG 392 (819)
Q Consensus 315 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 392 (819)
...+..+++.+.++|+++|+||||++...... |+..+++|+||+++.+
T Consensus 110 ----~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~-------------------------- 159 (229)
T cd07477 110 ----SPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN-------------------------- 159 (229)
T ss_pred ----CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC--------------------------
Confidence 25677888899999999999999999876654 7778899999874311
Q ss_pred CCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEE
Q 003446 393 RPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFIL 472 (819)
Q Consensus 393 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~ 472 (819)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeecccccCC
Q 003446 473 IANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGP 552 (819)
Q Consensus 473 ~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~FSS~Gp 552 (819)
+.++.||++|+
T Consensus 160 ---------------------------------------------------------------------~~~~~~s~~g~ 170 (229)
T cd07477 160 ---------------------------------------------------------------------NNRASFSSTGP 170 (229)
T ss_pred ---------------------------------------------------------------------CCcCCccCCCC
Confidence 23557899998
Q ss_pred CCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003446 553 DFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAIS 632 (819)
Q Consensus 553 ~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~ik~~L~ 632 (819)
.. |+.|||.+|+++++ .+.|..++|||||||+|||++|||+|++|+++|.+||++|+
T Consensus 171 ~~-------------~~~apg~~i~~~~~----------~~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~ 227 (229)
T cd07477 171 EV-------------ELAAPGVDILSTYP----------NNDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALN 227 (229)
T ss_pred Cc-------------eEEeCCCCeEEecC----------CCCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 65 89999999999874 35789999999999999999999999999999999999999
Q ss_pred hc
Q 003446 633 ST 634 (819)
Q Consensus 633 ~T 634 (819)
+|
T Consensus 228 ~t 229 (229)
T cd07477 228 KT 229 (229)
T ss_pred hC
Confidence 76
No 31
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3e-40 Score=344.35 Aligned_cols=158 Identities=20% Similarity=0.206 Sum_probs=118.3
Q ss_pred CCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCC
Q 003446 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDA 233 (819)
Q Consensus 154 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 233 (819)
+++|+|||||||||++||+|.++ +..+++|.... .+.........|.
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~----------------------------i~~~~~~~~~~-----~~~~~~~~~~~d~ 48 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK----------------------------IIGGKSFSPYE-----GDGNKVSPYYVSA 48 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc----------------------------cccCCCCCCCC-----CCcccCCCCCCCC
Confidence 78999999999999999999976 11111121110 0000011223468
Q ss_pred CCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-------CCHHHHHHHHHHHHhCCCcEEEeCC
Q 003446 234 VGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-------GTLADVIAAIDQATMDGVDILTLSI 306 (819)
Q Consensus 234 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-------~~~~~i~~ai~~a~~~g~dVIn~Sl 306 (819)
+||||||||||+ |+||+|+|+.+|+++..+ +....+++||+||+++|+|||||||
T Consensus 49 ~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~ 110 (247)
T cd07491 49 DGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSW 110 (247)
T ss_pred CCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeee
Confidence 899999999984 689999999999998744 3567899999999999999999999
Q ss_pred CCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCC-Cc--ccCCcceEEEccc
Q 003446 307 GPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPS-TV--VSYSPWAVAAAAC 363 (819)
Q Consensus 307 G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~--~~~~p~vitVgAs 363 (819)
|....... ......++.++++|.++|++||+||||+|.... .+ ++..|++|+|||+
T Consensus 111 g~~~~~~~-~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~ 169 (247)
T cd07491 111 TIKKPEDN-DNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAA 169 (247)
T ss_pred eccccccc-ccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEee
Confidence 97543210 123468899999999999999999999998764 32 4557889999874
No 32
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=1.7e-39 Score=350.76 Aligned_cols=153 Identities=27% Similarity=0.407 Sum_probs=110.0
Q ss_pred CeEEEEecceeccCCCCCCCCCC-CCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCCC
Q 003446 156 GIVIGFVDTGINPSHPSFANYNP-FEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAV 234 (819)
Q Consensus 156 gv~VaVIDtGid~~Hp~f~~~~~-~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 234 (819)
.|+|||||||||++||+|.+... ....+ ... ..+... ......+.....|..
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~~~~~-------~~~---------------~~~~~~-----~~~~~~~~~~~~d~~ 53 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSYSKNL-------VPK---------------GGYDGK-----EAGETGDINDIVDKL 53 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccccccc-------ccC---------------CCcCCc-----cccccCCCCcCCCCC
Confidence 38999999999999999997511 10000 000 000000 000011123456789
Q ss_pred CCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCC
Q 003446 235 GHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGVDILTLSIGPDEPPR 313 (819)
Q Consensus 235 gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~ 313 (819)
||||||||+|+|+.. ..||||+|+|+.+|+++..+ ....+++++|+||++++++|||||||......
T Consensus 54 gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~ 121 (294)
T cd07482 54 GHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIG 121 (294)
T ss_pred CcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCC
Confidence 999999999998742 35999999999999998876 48889999999999999999999999754332
Q ss_pred Cc----cccccHHHHHHHHHHhCCcEEEEeCCCCCCCC
Q 003446 314 DT----ITMLGIFDVLMLFARRAGVFVVQAAGNQGPAP 347 (819)
Q Consensus 314 ~~----~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~ 347 (819)
.. ....+.+..+++.+.++|++||+||||+|...
T Consensus 122 ~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 122 GEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred cccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 11 12235677888889999999999999999753
No 33
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=4.2e-40 Score=353.37 Aligned_cols=276 Identities=32% Similarity=0.488 Sum_probs=208.8
Q ss_pred EEEEecceeccCCCCCC-CCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCCCCC
Q 003446 158 VIGFVDTGINPSHPSFA-NYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGH 236 (819)
Q Consensus 158 ~VaVIDtGid~~Hp~f~-~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 236 (819)
+|||||||||++||+|. ++. ...++.+.+.|.+.. .......|..+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~~-----------------------~~~~~~~~~~~~~~~---------~~~~~~~~~~~H 48 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF-----------------------IWSKVPGGYNFVDGN---------PNPSPSDDDNGH 48 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE-----------------------EEEEEEEEEETTTTB---------STTTSSSTSSSH
T ss_pred CEEEEcCCcCCCChhHccCCc-----------------------ccccccceeeccCCC---------CCcCccccCCCc
Confidence 69999999999999999 540 012344566666541 112445678899
Q ss_pred ccccccccccCC-CcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHH-hCCCcEEEeCCCCCCCCCC
Q 003446 237 GSHVASTAAGNA-GVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQAT-MDGVDILTLSIGPDEPPRD 314 (819)
Q Consensus 237 GThVAGiiag~~-~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~-~~g~dVIn~SlG~~~~~~~ 314 (819)
||||||+|+|.. ..+ ..+.|+||+|+|+.+|++...+....++++++++++ +.+++|||||||..... .
T Consensus 49 GT~va~ii~~~~~~~~--------~~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~-~ 119 (282)
T PF00082_consen 49 GTHVAGIIAGNGGNNG--------PGINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGP-P 119 (282)
T ss_dssp HHHHHHHHHHTTSSSS--------SSETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESS-S
T ss_pred cchhhhhccccccccc--------cccccccccccccccccccccccccccccchhhhhhhccCCccccccccccccc-c
Confidence 999999999985 211 235899999999999998877677888999999999 89999999999873211 1
Q ss_pred ccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCC---cccCCcceEEEccccccceeeeeEEeCCCeEEeeecCCCCCC
Q 003446 315 TITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPST---VVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLSGPTC 391 (819)
Q Consensus 315 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 391 (819)
.....+.+..+++.+.++|+++|+||||+|..... .|...+++|+||++...
T Consensus 120 ~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~------------------------- 174 (282)
T PF00082_consen 120 DPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN------------------------- 174 (282)
T ss_dssp HSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT-------------------------
T ss_pred ccccccccccccccccccCcceeeccccccccccccccccccccccccccccccc-------------------------
Confidence 11234556778889999999999999999876543 44555777777753210
Q ss_pred CCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEE
Q 003446 392 GRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFI 471 (819)
Q Consensus 392 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i 471 (819)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeecccccC
Q 003446 472 LIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRG 551 (819)
Q Consensus 472 ~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~FSS~G 551 (819)
+.++.||++|
T Consensus 175 ----------------------------------------------------------------------~~~~~~s~~g 184 (282)
T PF00082_consen 175 ----------------------------------------------------------------------GQPASYSNYG 184 (282)
T ss_dssp ----------------------------------------------------------------------SSBSTTSSBS
T ss_pred ----------------------------------------------------------------------cccccccccc
Confidence 2357889997
Q ss_pred CCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003446 552 PDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAI 631 (819)
Q Consensus 552 p~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~ik~~L 631 (819)
+... .+++||||+|||.+|+++++... ...|..++|||||||+|||++|||+|++|+|++.+||.+|
T Consensus 185 ~~~~------~~~~~~di~a~G~~i~~~~~~~~-------~~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l 251 (282)
T PF00082_consen 185 GPSD------DGRIKPDIAAPGGNILSAVPGSD-------RGSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALL 251 (282)
T ss_dssp TTET------TCTTCEEEEEECSSEEEEETTTE-------SEEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred cccc------ccccccccccccccccccccccc-------cccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 6653 26899999999999999885321 1358899999999999999999999999999999999999
Q ss_pred HhcccccccCCCccccccccccccCCCCCcccccccccccccCC
Q 003446 632 SSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675 (819)
Q Consensus 632 ~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~ 675 (819)
++||.++...+ .......||+|+||+.+|++
T Consensus 252 ~~ta~~~~~~~-------------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 252 INTADDLGSTN-------------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHSBESSETT-------------SSSSHHHHTTSBE-HHHHHH
T ss_pred HHhCcccCcCC-------------CCCCCCCccCChhCHHHHhC
Confidence 99999886221 12345678999999999974
No 34
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=5.7e-39 Score=347.10 Aligned_cols=171 Identities=21% Similarity=0.236 Sum_probs=113.3
Q ss_pred cccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccC
Q 003446 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLN 222 (819)
Q Consensus 143 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~ 222 (819)
+|.. +++|+||+|+|||||||++||+|.++... ...++|...
T Consensus 31 ~w~~----g~~G~gv~VaViDtGv~~~h~~l~~~~~~--------------------------~~~~~~~~~-------- 72 (297)
T cd04059 31 AWEQ----GITGKGVTVAVVDDGLEITHPDLKDNYDP--------------------------EASYDFNDN-------- 72 (297)
T ss_pred HHhC----CCCCcceEEEEEeCCcccCCHhHhhcccc--------------------------cccccccCC--------
Confidence 7776 79999999999999999999999976110 011112111
Q ss_pred CCCCCCCC--CCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHhCCCc
Q 003446 223 TSVDFLSP--FDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVD 300 (819)
Q Consensus 223 ~~~~~~~~--~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~d 300 (819)
.....+ .|..+|||||||||+|+.... ....||||+|+|+.+|+++.. .....+..++.++.+ .++
T Consensus 73 --~~~~~~~~~~~~gHGT~vAgiiag~~~~~--------~~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~ 140 (297)
T cd04059 73 --DPDPTPRYDDDNSHGTRCAGEIAAVGNNG--------ICGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YID 140 (297)
T ss_pred --CCCCCCccccccccCcceeeEEEeecCCC--------cccccccccceEeEEEecCCc-cccHHHHHHHhcccC-Cce
Confidence 000122 277899999999999985321 124799999999999998765 333445566666554 459
Q ss_pred EEEeCCCCCCCCCCccccccHHHHHHHHHHh-----CCcEEEEeCCCCCCCCCC----cccCCcceEEEccc
Q 003446 301 ILTLSIGPDEPPRDTITMLGIFDVLMLFARR-----AGVFVVQAAGNQGPAPST----VVSYSPWAVAAAAC 363 (819)
Q Consensus 301 VIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~----~~~~~p~vitVgAs 363 (819)
|||||||..............+..+++++.+ +|++||+||||+|..... .+...+++|+|||+
T Consensus 141 Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~ 212 (297)
T cd04059 141 IYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAV 212 (297)
T ss_pred EEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEee
Confidence 9999999764321111122344455555544 699999999999973221 12345677777764
No 35
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-38 Score=328.46 Aligned_cols=149 Identities=21% Similarity=0.230 Sum_probs=114.5
Q ss_pred CeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCCCC
Q 003446 156 GIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVG 235 (819)
Q Consensus 156 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g 235 (819)
||+|||||||||++||+|.++.... +.+... ....+.....|..|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~~----------------------------~~~~~~-------~~~~~~~~~~d~~g 45 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALDG----------------------------EVTIDL-------EIIVVSAEGGDKDG 45 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccccc----------------------------cccccc-------ccccCCCCCCCCCC
Confidence 7999999999999999999861110 000000 00011234567889
Q ss_pred CccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCC
Q 003446 236 HGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGVDILTLSIGPDEPPRD 314 (819)
Q Consensus 236 HGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~ 314 (819)
|||||||||++. +|+++|+.+|+++..+ +..+++++||+|++++|++|||||||.....
T Consensus 46 HGT~vAgiia~~------------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-- 105 (222)
T cd07492 46 HGTACAGIIKKY------------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-- 105 (222)
T ss_pred cHHHHHHHHHcc------------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC--
Confidence 999999999753 5999999999998876 7788899999999999999999999975421
Q ss_pred ccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCCcceEEEccc
Q 003446 315 TITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAAC 363 (819)
Q Consensus 315 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs 363 (819)
....+..+++++.++|+++|+||||++.... .|+..+++|+|++.
T Consensus 106 ---~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~ 150 (222)
T cd07492 106 ---DFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSD 150 (222)
T ss_pred ---cCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEec
Confidence 2356788888999999999999999987543 36667888888863
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=3.9e-37 Score=327.45 Aligned_cols=246 Identities=30% Similarity=0.365 Sum_probs=185.0
Q ss_pred CCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCC
Q 003446 153 AGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFD 232 (819)
Q Consensus 153 ~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d 232 (819)
+|+||+|+|||+||+.+||+|.+....... +.. ..........|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~----------------------------~~~--------~~~~~~~~~~~ 44 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASY----------------------------YVA--------VNDAGYASNGD 44 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccccc----------------------------ccc--------cccccCCCCCC
Confidence 699999999999999999999987111000 000 00000133457
Q ss_pred CCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC--CCHHHHHHHHHHHHhCCCcEEEeCCCCCC
Q 003446 233 AVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV--GTLADVIAAIDQATMDGVDILTLSIGPDE 310 (819)
Q Consensus 233 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 310 (819)
.++|||||||+|+|+... ....|+||+|+|+.+|+++..+ .....+.++++++++.+++|||||||...
T Consensus 45 ~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~ 115 (267)
T cd04848 45 GDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNP 115 (267)
T ss_pred CCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCC
Confidence 789999999999998542 3468999999999999998764 55677899999999999999999999865
Q ss_pred CCCC--------ccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCc---------ccCCcceEEEccccccceeeeeE
Q 003446 311 PPRD--------TITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTV---------VSYSPWAVAAAACTTDRIYPGSL 373 (819)
Q Consensus 311 ~~~~--------~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~---------~~~~p~vitVgAs~~~~~~~~~~ 373 (819)
.... .......+..+++.+.++|+++|+||||++...... +...+++|+||+++.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~------- 188 (267)
T cd04848 116 AIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN------- 188 (267)
T ss_pred cccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC-------
Confidence 3311 012456778888899999999999999998754332 1234566666654221
Q ss_pred EeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCcc
Q 003446 374 LLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTS 453 (819)
Q Consensus 374 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~ 453 (819)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccce
Q 003446 454 TLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGR 533 (819)
Q Consensus 454 ~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (819)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccCCCCeeec--ccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHH
Q 003446 534 VASFEGRAPIVSR--FSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGI 611 (819)
Q Consensus 534 ~~~~~~~~~~~a~--FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~ 611 (819)
+.... ||++|+... .+++.|||.+|+++.+. .+..|..++|||||||+|||+
T Consensus 189 --------~~~~~~~~s~~~~~~~----------~~~~~apG~~i~~~~~~--------~~~~~~~~~GTS~Aap~vaG~ 242 (267)
T cd04848 189 --------GTIASYSYSNRCGVAA----------NWCLAAPGENIYSTDPD--------GGNGYGRVSGTSFAAPHVSGA 242 (267)
T ss_pred --------CCcccccccccchhhh----------hheeecCcCceeecccC--------CCCcccccceeEchHHHHHHH
Confidence 11222 477776542 34799999999998752 134789999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhccc
Q 003446 612 AALIKQHNPSWTPTMIASAISSTAT 636 (819)
Q Consensus 612 aALl~q~~P~~sp~~ik~~L~~TA~ 636 (819)
+|||+|++|+|+++|||++|++||+
T Consensus 243 ~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 243 AALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred HHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-35 Score=311.12 Aligned_cols=262 Identities=24% Similarity=0.341 Sum_probs=204.0
Q ss_pred CCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCC
Q 003446 151 KNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSP 230 (819)
Q Consensus 151 ~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 230 (819)
|++|++|+|||.|||+.-+||-|+.-.+.+ .|. ++ ..-
T Consensus 197 GyTGa~VkvAiFDTGl~~~HPHFrnvKERT----NWT-------------------------NE-------------~tL 234 (1033)
T KOG4266|consen 197 GYTGAKVKVAIFDTGLRADHPHFRNVKERT----NWT-------------------------NE-------------DTL 234 (1033)
T ss_pred cccCCceEEEEeecccccCCccccchhhhc----CCc-------------------------Cc-------------ccc
Confidence 899999999999999999999999752111 221 11 234
Q ss_pred CCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCC
Q 003446 231 FDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGVDILTLSIGPD 309 (819)
Q Consensus 231 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~ 309 (819)
.|..||||.|||+|||... -.|.||+++|+++|||.+.. .+.+.++.|++||+....||+|+|+|++
T Consensus 235 dD~lgHGTFVAGvia~~~e------------c~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP 302 (1033)
T KOG4266|consen 235 DDNLGHGTFVAGVIAGRNE------------CLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP 302 (1033)
T ss_pred ccCcccceeEeeeeccchh------------hcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc
Confidence 4678999999999999852 36999999999999999866 7889999999999999999999999986
Q ss_pred CCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCC--cceEEEccccccceeeeeEEeCCCeEEeeecCC
Q 003446 310 EPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYS--PWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLS 387 (819)
Q Consensus 310 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~--p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~~ 387 (819)
. +...++-.-+.+.....|++|.|+||+||-..+..+++ ..||.||.
T Consensus 303 D------fmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGG------------------------- 351 (1033)
T KOG4266|consen 303 D------FMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGG------------------------- 351 (1033)
T ss_pred c------cccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecc-------------------------
Confidence 3 34456666677788999999999999998655443321 12222221
Q ss_pred CCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCc
Q 003446 388 GPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGF 467 (819)
Q Consensus 388 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga 467 (819)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeecc
Q 003446 468 MGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRF 547 (819)
Q Consensus 468 ~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~F 547 (819)
.+..+.++.|
T Consensus 352 ----------------------------------------------------------------------IdfdD~IA~F 361 (1033)
T KOG4266|consen 352 ----------------------------------------------------------------------IDFDDHIASF 361 (1033)
T ss_pred ----------------------------------------------------------------------ccccchhhhh
Confidence 1112579999
Q ss_pred cccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHH----hCCCCC
Q 003446 548 SSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQ----HNPSWT 623 (819)
Q Consensus 548 SS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~P~~s 623 (819)
||||-+.-.+ +..-|+.||||++-|.+|..... ..+...+||||.|+|.|||+++||.+ +.--++
T Consensus 362 SSRGMtTWEL-P~GYGRmkpDiVtYG~~v~GS~v----------~~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~N 430 (1033)
T KOG4266|consen 362 SSRGMTTWEL-PHGYGRMKPDIVTYGRDVMGSKV----------STGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLN 430 (1033)
T ss_pred ccCCcceeec-CCcccccCCceEeeccccccCcc----------cccchhccCCcccchhhhceeeeEeeeheehhhccC
Confidence 9999765321 11337999999999999986542 23678999999999999999999977 233368
Q ss_pred HHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCC
Q 003446 624 PTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675 (819)
Q Consensus 624 p~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~ 675 (819)
|+-+|.+|+..|.+++... -+.||+|++|+.++.+
T Consensus 431 PASmKQaLiegA~kLpg~N-----------------MfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 431 PASMKQALIEGAAKLPGPN-----------------MFEQGAGKLDLLESYQ 465 (1033)
T ss_pred HHHHHHHHHhHHhhCCCCc-----------------hhhccCcchhHHHHHH
Confidence 9999999999999886432 2679999999998875
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-35 Score=324.66 Aligned_cols=239 Identities=29% Similarity=0.354 Sum_probs=179.4
Q ss_pred CCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCC-C--CCHHHHHHHHHHHHhCCCcEEEeCCCCC
Q 003446 233 AVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-V--GTLADVIAAIDQATMDGVDILTLSIGPD 309 (819)
Q Consensus 233 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~-g--~~~~~i~~ai~~a~~~g~dVIn~SlG~~ 309 (819)
...||||||||++|+.... ....||||+|+|+++++-+.. | .+...+.+|+..++++.+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~--------p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPET--------PELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCC--------ccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 3469999999999997543 245799999999999997653 2 3344689999999999999999999988
Q ss_pred CCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCccc---CCcceEEEccccccceeeeeEEeCCCeEEeeecC
Q 003446 310 EPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVS---YSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGL 386 (819)
Q Consensus 310 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~---~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~ 386 (819)
..++... +.++.+-+.+-+.||++|+||||+||.-.++++ ....+|.|||........
T Consensus 381 a~~pn~G---RviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~---------------- 441 (1304)
T KOG1114|consen 381 AHLPNSG---RVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQ---------------- 441 (1304)
T ss_pred CCCCCcc---hHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHH----------------
Confidence 7775433 344444445568899999999999998777654 345788888743221100
Q ss_pred CCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcC
Q 003446 387 SGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLG 466 (819)
Q Consensus 387 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~G 466 (819)
..|.+
T Consensus 442 ---------a~y~~------------------------------------------------------------------ 446 (1304)
T KOG1114|consen 442 ---------AEYSV------------------------------------------------------------------ 446 (1304)
T ss_pred ---------hhhhh------------------------------------------------------------------
Confidence 00000
Q ss_pred ceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeec
Q 003446 467 FMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSR 546 (819)
Q Consensus 467 a~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 546 (819)
.......+..
T Consensus 447 ----------------------------------------------------------------------~e~vp~~~Yt 456 (1304)
T KOG1114|consen 447 ----------------------------------------------------------------------REPVPSNPYT 456 (1304)
T ss_pred ----------------------------------------------------------------------hccCCCCccc
Confidence 0001134678
Q ss_pred ccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHH----hCCCC
Q 003446 547 FSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQ----HNPSW 622 (819)
Q Consensus 547 FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~P~~ 622 (819)
+|||||+.| |.+--.|.|||+.|.|-- .. .-..-..|.|||||+|+++|.+|||++ .+-.|
T Consensus 457 WsSRgP~~D-------G~lGVsi~APggAiAsVP-~~-------tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~y 521 (1304)
T KOG1114|consen 457 WSSRGPCLD-------GDLGVSISAPGGAIASVP-QY-------TLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPY 521 (1304)
T ss_pred cccCCCCcC-------CCcceEEecCCccccCCc-hh-------hhhhhhhhCCcccCCccccchHHHHHHHHHhcCCCC
Confidence 899999998 678889999999997642 11 122457899999999999999999976 46789
Q ss_pred CHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCC
Q 003446 623 TPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675 (819)
Q Consensus 623 sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~ 675 (819)
||..||.+|++||.+++.. .+|.||.|+|++++|.+
T Consensus 522 tpysVrrAlenTa~~l~~i-----------------d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 522 TPYSVRRALENTATKLGDI-----------------DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred cHHHHHHHHHhcccccCcc-----------------chhccCcceeehhHHHH
Confidence 9999999999999988532 35889999999999986
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.97 E-value=2.2e-32 Score=284.24 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=84.4
Q ss_pred CCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHH--HhCCCcEEEeCCC
Q 003446 230 PFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQA--TMDGVDILTLSIG 307 (819)
Q Consensus 230 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a--~~~g~dVIn~SlG 307 (819)
..|.++|||||||||||.. |++|+|+|+..++... ..+.+.++++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~~---------------~~~p~a~~~~~~~~~~---~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGRD---------------GGLPAVNLYSSAFGIK---SNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhcc---------------CCCCccceehhhhCCC---CCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 4478999999999999973 5679999987555222 233466777888 6789999999999
Q ss_pred CCCCCCC--ccccccHHHHHHHHHHhC-CcEEEEeCCCCCCCC-----CCcccCCcceEEEcccc
Q 003446 308 PDEPPRD--TITMLGIFDVLMLFARRA-GVFVVQAAGNQGPAP-----STVVSYSPWAVAAAACT 364 (819)
Q Consensus 308 ~~~~~~~--~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVgAs~ 364 (819)
....... .......+..+++.+.++ |+++|+||||+|... ...+..++++|+|||++
T Consensus 95 ~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d 159 (247)
T cd07488 95 EGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTD 159 (247)
T ss_pred cCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEec
Confidence 7644310 001224567778777666 999999999999853 22355678889999754
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.97 E-value=1.2e-29 Score=264.57 Aligned_cols=122 Identities=35% Similarity=0.477 Sum_probs=100.3
Q ss_pred CCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHH-hCCCcEEEeCC
Q 003446 229 SPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQAT-MDGVDILTLSI 306 (819)
Q Consensus 229 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~-~~g~dVIn~Sl 306 (819)
...+..+||||||++|++..... ...|+||+++|+.+|+....+ .....+++++++++ ..+++||||||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~---------~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNG---------GGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCC---------CCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 34567899999999999986432 126999999999999998766 67788999999999 89999999999
Q ss_pred CCCCCCCCccccccHHHHHHHHHHhC-CcEEEEeCCCCCCCCC---CcccCCcceEEEcccc
Q 003446 307 GPDEPPRDTITMLGIFDVLMLFARRA-GVFVVQAAGNQGPAPS---TVVSYSPWAVAAAACT 364 (819)
Q Consensus 307 G~~~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgAs~ 364 (819)
|..... ....+..++..+.++ |+++|+||||.+.... ..++..+++|+||+++
T Consensus 110 g~~~~~-----~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~ 166 (241)
T cd00306 110 GGPGSP-----PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVD 166 (241)
T ss_pred CCCCCC-----CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecC
Confidence 986432 235677778888887 9999999999998776 4677789999999753
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.9e-23 Score=240.52 Aligned_cols=148 Identities=31% Similarity=0.401 Sum_probs=113.4
Q ss_pred CCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCC
Q 003446 151 KNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSP 230 (819)
Q Consensus 151 ~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 230 (819)
+++|+|++|+|||+||+..||+|.+.... .++|.+. .+....
T Consensus 138 ~~~g~gv~~~vid~gv~~~~~~~~~~~~~----------------------------~~~~~~~----------~~~~~~ 179 (508)
T COG1404 138 GLTGKGVTVAVIDTGVDASHPDLAGSAVA----------------------------GGDFVDG----------DPEPPF 179 (508)
T ss_pred CCCCCCeEEEEeccCCCCCChhhhccccc----------------------------ccccccC----------CCCCCC
Confidence 68999999999999999999999986110 0122211 000124
Q ss_pred CCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCC-C-CCHHHHHHHHHHHHhCC--CcEEEeCC
Q 003446 231 FDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-V-GTLADVIAAIDQATMDG--VDILTLSI 306 (819)
Q Consensus 231 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~-g-~~~~~i~~ai~~a~~~g--~dVIn~Sl 306 (819)
.|.++|||||+|++++.... +.....|++|+++++.+|++... | +..++++.+++++++.+ +++||||+
T Consensus 180 ~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~ 252 (508)
T COG1404 180 LDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSL 252 (508)
T ss_pred CCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecC
Confidence 68899999999999984210 01235799999999999999976 5 77788899999999999 99999999
Q ss_pred CCCCCCCCccccccHHHHHHHHHHhCC-cEEEEeCCCCCCCC
Q 003446 307 GPDEPPRDTITMLGIFDVLMLFARRAG-VFVVQAAGNQGPAP 347 (819)
Q Consensus 307 G~~~~~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~ 347 (819)
|.. .. ......+..++..++..| +++|+++||.+...
T Consensus 253 g~~-~~---~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~ 290 (508)
T COG1404 253 GGS-LS---DSASPALGDALAAAANAGGVVIVAAAGNDGSNA 290 (508)
T ss_pred CCC-cc---ccccHHHHHHHHHHHHcCCEEEEEecccCCCCC
Confidence 975 11 123467788888888888 99999999998764
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.9e-20 Score=190.25 Aligned_cols=156 Identities=17% Similarity=0.246 Sum_probs=100.3
Q ss_pred cccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccC
Q 003446 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLN 222 (819)
Q Consensus 143 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~ 222 (819)
+|.. +++||+|+++|+|.||||-||||+.+ |. --..|+|...
T Consensus 153 awa~----g~tgknvttaimddgvdymhpdlk~n---yn-----------------------aeasydfssn-------- 194 (629)
T KOG3526|consen 153 AWAL----GYTGKNVTTAIMDDGVDYMHPDLKSN---YN-----------------------AEASYDFSSN-------- 194 (629)
T ss_pred HHhh----cccCCCceEEeecCCchhcCcchhcc---cC-----------------------ceeecccccC--------
Confidence 6776 89999999999999999999999976 11 1123344332
Q ss_pred CCCCCCCCCC--CCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHh-CCC
Q 003446 223 TSVDFLSPFD--AVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATM-DGV 299 (819)
Q Consensus 223 ~~~~~~~~~d--~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~ 299 (819)
.+-+++...| .+.|||.|||-+++..+++.. -.|||.+.++..+|.++. -+..|+++|-...-+ ...
T Consensus 195 dpfpyprytddwfnshgtrcagev~aardngic--------gvgvaydskvagirmldq--pymtdlieansmghep~ki 264 (629)
T KOG3526|consen 195 DPFPYPRYTDDWFNSHGTRCAGEVVAARDNGIC--------GVGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKI 264 (629)
T ss_pred CCCCCCcccchhhhccCccccceeeeeccCCce--------eeeeeeccccceeeecCC--chhhhhhhhcccCCCCceE
Confidence 1112222222 579999999987766554432 159999999999999986 456677665432222 346
Q ss_pred cEEEeCCCCCCCCCCccccccHHHHHHHHHHh-----CCcEEEEeCCCCCCC
Q 003446 300 DILTLSIGPDEPPRDTITMLGIFDVLMLFARR-----AGVFVVQAAGNQGPA 346 (819)
Q Consensus 300 dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~ 346 (819)
+|.+.|||.....-.-+....+.-+|+-.-++ .|-+.|.|.|..|.+
T Consensus 265 hiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 265 HIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred EEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 89999999653220001112233334433333 467899999988764
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.71 E-value=8.4e-17 Score=177.77 Aligned_cols=103 Identities=23% Similarity=0.257 Sum_probs=82.8
Q ss_pred ccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHhC---CCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEE
Q 003446 261 LASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMD---GVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVV 337 (819)
Q Consensus 261 ~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~---g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV 337 (819)
.+.||||+|+|+.|++.++. ...++.++.+++.+ +++|||+|||....... ..+.+.++.++++|..+||+||
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~-~~~~~~~~~~~~~a~~~Gitvv 157 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLP-PAYAQRVCNLFAQAAAQGITVL 157 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccC-HHHHHHHHHHHHHHHhCCeEEE
Confidence 46899999999999997753 34577888888887 99999999998653311 2345678899999999999999
Q ss_pred EeCCCCCCCCC-----------CcccCCcceEEEccccccc
Q 003446 338 QAAGNQGPAPS-----------TVVSYSPWAVAAAACTTDR 367 (819)
Q Consensus 338 ~AAGN~g~~~~-----------~~~~~~p~vitVgAs~~~~ 367 (819)
+||||+|.... ..|+.+|+|++||+++...
T Consensus 158 aAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 158 AASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 99999997653 3467899999999987653
No 44
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=99.29 E-value=3.2e-11 Score=110.18 Aligned_cols=87 Identities=24% Similarity=0.328 Sum_probs=63.4
Q ss_pred EEecccceEEEEEEEEEecCCceeEEEEEeC--------CCC----------c-eEEEeCCeEEEeCCcEEEEEEEEEEe
Q 003446 726 TVSAVAKSLILQRSLKNVGNKTETYLTSVVH--------PNG----------T-TVSLYPPWFTIAPQGTQDLAIQFNVT 786 (819)
Q Consensus 726 ~~~~~~~~~~~~~tv~N~g~~~~ty~~~~~~--------~~g----------~-~v~~~p~~~tv~~g~~~~~~v~~~~~ 786 (819)
++.+.....+++++|+|.|+++.+|++++.. ..| + .+.+++.+|||+||++++|+|+|++|
T Consensus 2 ~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p 81 (112)
T PF06280_consen 2 SLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPP 81 (112)
T ss_dssp EEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--
T ss_pred CccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEeh
Confidence 3445555678889999999999999999871 011 1 57788999999999999999999998
Q ss_pred cC----CCCeEEEEEEEEeCCcc-EEEEeEE
Q 003446 787 QA----IGDFSFGEIVLTGSLNH-IVRIPLS 812 (819)
Q Consensus 787 ~~----~~~~~~G~i~~~~~~~~-~l~~P~~ 812 (819)
+. .+.|++|||.|++++++ .|+|||+
T Consensus 82 ~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 82 SGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred hcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 83 47899999999998886 9999996
No 45
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=98.86 E-value=1.5e-08 Score=96.93 Aligned_cols=103 Identities=23% Similarity=0.256 Sum_probs=73.3
Q ss_pred CCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHH
Q 003446 429 AFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYY 508 (819)
Q Consensus 429 ~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~ 508 (819)
++...+++|||+||+| |.|.+.+|..+++.+||.|+|++|+..............+|.++| +.++++.|++|+
T Consensus 40 d~~~~dv~GkIvL~~r------g~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~I-s~~dG~~L~~~l 112 (143)
T cd02133 40 DFEGKDVKGKIALIQR------GEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFI-SKEDGEALKAAL 112 (143)
T ss_pred ccCCCCccceEEEEEC------CCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEe-cHHHHHHHHHHH
Confidence 4455679999999998 568899999999999999999999875321111111346888887 889999999999
Q ss_pred hhccccCCCcceeeeceeeeeccceeeeccCCCCeeecccccCCCC
Q 003446 509 EQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGPDF 554 (819)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~FSS~Gp~~ 554 (819)
++ . ..+.|... .. ....+.++.||||||+-
T Consensus 113 ~~-~------~~i~~~~~--------~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 113 ES-S------KKLTFNTK--------KE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred hC-C------CeEEEEec--------cc-cccCCccccccCcCCCC
Confidence 76 1 12222211 11 23456799999999963
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.80 E-value=1.8e-08 Score=86.51 Aligned_cols=79 Identities=29% Similarity=0.410 Sum_probs=54.8
Q ss_pred EEEEEeCCCCccccCCCCcccccccchhhhhhhhhHHHHHHHHHHHhh---ccCcccEEEEeeeeeeEEEEEcCHHHHHH
Q 003446 34 IYLVLIEGEPLAFHGSDDKRRFDLNSDAYKGQTKRLMDSHDRILQSTL---EIGSYNKLYSFKYTVNGFAVHLTPTQAKK 110 (819)
Q Consensus 34 ~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~ng~~~~~~~~~~~~ 110 (819)
+|||.|++.... +...+.+.+.+.+++.+.. .....++.+.|...||||+++++++++++
T Consensus 1 ~YIV~~k~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~ 63 (82)
T PF05922_consen 1 RYIVVFKDDASA-----------------ASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEK 63 (82)
T ss_dssp EEEEEE-TTSTH-----------------HCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHH
T ss_pred CEEEEECCCCCc-----------------chhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHH
Confidence 699999998532 1123344444444444432 23357889999989999999999999999
Q ss_pred HhcCCCceEEEeCcccccc
Q 003446 111 LENAPQVKLVERDRRAKLM 129 (819)
Q Consensus 111 L~~~p~V~~v~~~~~~~~~ 129 (819)
|+++|+|++|+||..++++
T Consensus 64 L~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 64 LRKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp HHTSTTEEEEEEECEEEE-
T ss_pred HHcCCCeEEEEeCceEecC
Confidence 9999999999999998763
No 47
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.79 E-value=5.7e-08 Score=90.86 Aligned_cols=118 Identities=22% Similarity=0.263 Sum_probs=86.8
Q ss_pred EEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCc
Q 003446 373 LLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQT 452 (819)
Q Consensus 373 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~ 452 (819)
++++||+++.|+++.+... ..+++++...... ......|.. ..+...+++||||+|+++ .
T Consensus 2 i~LGng~~i~G~sl~~~~~----~~~~~~~~~~~~~---------~~~~~~C~~-~~~~~~~v~GkIVlc~~~------~ 61 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL----KTYPLVYKSANSG---------DVDASLCLP-GSLDPSKVKGKIVLCDRG------G 61 (126)
T ss_pred EEeCCCCEEEEEEccCCCC----CccceEeccCcCC---------CCccccCCC-CCCChhhccccEEEEeCC------C
Confidence 5789999999999996542 3567766332111 234578963 445557899999999884 4
Q ss_pred c-chHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhcc
Q 003446 453 S-TLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQT 512 (819)
Q Consensus 453 ~-~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~ 512 (819)
+ .+.++..+++++||.|+|++|+....... ......+|.+.| ..++++.|++|+++..
T Consensus 62 ~~~~~~k~~~~~~~GA~gvI~~~~~~~~~~~-~~~~~~iP~v~I-~~~~g~~l~~y~~~~~ 120 (126)
T cd02120 62 NTSRVAKGDAVKAAGGAGMILANDPTDGLDV-VADAHVLPAVHV-DYEDGTAILSYINSTS 120 (126)
T ss_pred CccHHHHHHHHHHcCCcEEEEEecCCCCcee-cccccccceEEE-CHHHHHHHHHHHHcCC
Confidence 5 77889999999999999999987642222 222467999998 7799999999998753
No 48
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=7.4e-06 Score=98.53 Aligned_cols=99 Identities=21% Similarity=0.253 Sum_probs=62.9
Q ss_pred ccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHhCCC-cEEEeCCCCCCCC-CCccccccHHHHHHHHHHhCCcEEEE
Q 003446 261 LASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGV-DILTLSIGPDEPP-RDTITMLGIFDVLMLFARRAGVFVVQ 338 (819)
Q Consensus 261 ~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~-dVIn~SlG~~~~~-~~~~~~~~~~~~a~~~a~~~Gi~vV~ 338 (819)
..+-+||+|+|..+-. .. .....+..|+.+...+=+ -+|-.||+....- .....+.+.++.....|..+||.+++
T Consensus 287 ~s~A~AP~A~I~lvva--p~-~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~A 363 (1174)
T COG4934 287 WSHAMAPKANIDLVVA--PN-PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFA 363 (1174)
T ss_pred hhhccCccCceEEEEc--CC-CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEE
Confidence 3568999999998866 21 222223333333222211 2333566652211 11122557788888899999999999
Q ss_pred eCCCCCCCCCC--------cccCCcceEEEcc
Q 003446 339 AAGNQGPAPST--------VVSYSPWAVAAAA 362 (819)
Q Consensus 339 AAGN~g~~~~~--------~~~~~p~vitVgA 362 (819)
|+|.+|....+ .|+.+|++.+||.
T Consensus 364 ASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 364 ASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999876543 4678999999997
No 49
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.26 E-value=5.6e-06 Score=75.50 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=63.1
Q ss_pred ccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCc---cccccCCCCCeEEecC
Q 003446 421 IEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDF---VAEPIPFAVPGILIPK 497 (819)
Q Consensus 421 ~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~---~~~~~~~~~p~~~i~~ 497 (819)
...|. ...+...+++|||++++| |.|+|.+|..+|+++||.++||||+...... ........||.++| +
T Consensus 30 ~~gC~-~~~~~~~~l~gkIaLV~R------G~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~I-s 101 (120)
T cd02129 30 SVLCS-ASDVPPGGLKGKAVVVMR------GNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALL-S 101 (120)
T ss_pred cCCCC-ccccCccccCCeEEEEEC------CCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEE-e
Confidence 36687 444555678999999999 7899999999999999999999998753111 11124567899997 7
Q ss_pred cchHHHHHHHHhh
Q 003446 498 VSTSEIILQYYEQ 510 (819)
Q Consensus 498 ~~~~~~l~~~~~~ 510 (819)
.++++.|++.+..
T Consensus 102 ~~dG~~i~~~l~~ 114 (120)
T cd02129 102 YKDMLDIQQTFGD 114 (120)
T ss_pred HHHHHHHHHHhcc
Confidence 8899999887653
No 50
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.23 E-value=4.2e-06 Score=74.77 Aligned_cols=75 Identities=21% Similarity=0.357 Sum_probs=58.2
Q ss_pred CCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCC---CCccccccCCCCCeEEecCcchHHH
Q 003446 427 PEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHY---GDFVAEPIPFAVPGILIPKVSTSEI 503 (819)
Q Consensus 427 ~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~---~~~~~~~~~~~~p~~~i~~~~~~~~ 503 (819)
...+...+++||||+|+| |.|++.+|+.+++++||.|+|++|.... ...........+|.++| +.++++.
T Consensus 24 ~~~~~~~~~~gkIvlv~r------g~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I-~~~~g~~ 96 (101)
T PF02225_consen 24 PSDYNGSDVKGKIVLVER------GSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFI-SYEDGEA 96 (101)
T ss_dssp HHHTSTSTCTTSEEEEES------TSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE--HHHHHH
T ss_pred ccccCCccccceEEEEec------CCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEe-CHHHHhh
Confidence 345667789999999987 7899999999999999999999992211 12223455678999999 8899999
Q ss_pred HHHHH
Q 003446 504 ILQYY 508 (819)
Q Consensus 504 l~~~~ 508 (819)
|++|+
T Consensus 97 L~~~i 101 (101)
T PF02225_consen 97 LLAYI 101 (101)
T ss_dssp HHHHH
T ss_pred hhccC
Confidence 99875
No 51
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=9.3e-06 Score=90.98 Aligned_cols=159 Identities=20% Similarity=0.254 Sum_probs=96.5
Q ss_pred cccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccC
Q 003446 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLN 222 (819)
Q Consensus 143 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~ 222 (819)
+|.. +++|+++.|+|+|+|+...||++..... ..+.+++.... +
T Consensus 25 ~~~~----~~~g~~~~~~i~ddgl~~~h~~~~~~~~--------------------------~~~s~d~~~~~------~ 68 (431)
T KOG3525|consen 25 AWCK----GYTGTRVSVTILDDGLECSHPDLRNNYD--------------------------PLGSYDVNRHD------N 68 (431)
T ss_pred cccc----CCCCCceEEEEeeccccccCcccccccC--------------------------cceeEeeecCC------C
Confidence 6766 8999999999999999999999997611 22223332210 1
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHH-hCCCcE
Q 003446 223 TSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQAT-MDGVDI 301 (819)
Q Consensus 223 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~-~~g~dV 301 (819)
...+..+......|||-|++-.+...... .=..|+++++++..+|++... ..+...+..... ..-.++
T Consensus 69 ~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~--------~C~vg~~~~~~~~g~~~l~~~---v~~~~~~~~~~~~~~~~di 137 (431)
T KOG3525|consen 69 DPEPRCDGTNENKHGTRCAGCVAARANNL--------TCGVGVAYNATIGGIRMLAGC---VSDAVEAPSLGFGPCHIDI 137 (431)
T ss_pred CcccccCCCCccccCCCCCcccccccCCC--------cCCCCcccCccccceeeeeee---cccceecccccCCCCCcee
Confidence 11111222345899999999988775211 113699999999999987641 112222222112 234688
Q ss_pred EEeCCCCCCCCCCccccccHHHHHHHHH-----HhCCcEEEEeCCCCCCCCC
Q 003446 302 LTLSIGPDEPPRDTITMLGIFDVLMLFA-----RRAGVFVVQAAGNQGPAPS 348 (819)
Q Consensus 302 In~SlG~~~~~~~~~~~~~~~~~a~~~a-----~~~Gi~vV~AAGN~g~~~~ 348 (819)
-..|||......--+.-......+...+ ..+|-+.|+|.||.|....
T Consensus 138 ~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 138 YSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred ecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 9999996532200011122333344333 3578899999999886543
No 52
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.06 E-value=1.7e-05 Score=73.68 Aligned_cols=83 Identities=18% Similarity=0.256 Sum_probs=63.1
Q ss_pred ccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCc--cc-cc-cCCCCCeEEec
Q 003446 421 IEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDF--VA-EP-IPFAVPGILIP 496 (819)
Q Consensus 421 ~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~~-~~-~~~~~p~~~i~ 496 (819)
.+.|.+ ..+...+++|||++|.| |.|.+.+|..+++++||.++|++|+...... .. .+ ....+|.++|
T Consensus 29 ~~gC~~-~~~~~~~~~GkIvLv~r------g~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~I- 100 (122)
T cd04816 29 PAGCDA-SDYDGLDVKGAIVLVDR------GGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVI- 100 (122)
T ss_pred ccCCCc-cccCCCCcCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEE-
Confidence 467864 34455679999999998 6788999999999999999999998762111 11 11 3456898887
Q ss_pred CcchHHHHHHHHhhc
Q 003446 497 KVSTSEIILQYYEQQ 511 (819)
Q Consensus 497 ~~~~~~~l~~~~~~~ 511 (819)
+.++++.|++++...
T Consensus 101 s~~~G~~l~~~l~~g 115 (122)
T cd04816 101 TKAAGAALRRRLGAG 115 (122)
T ss_pred cHHHHHHHHHHHcCC
Confidence 779999999998654
No 53
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.05 E-value=1.9e-05 Score=72.46 Aligned_cols=83 Identities=11% Similarity=0.165 Sum_probs=62.8
Q ss_pred ccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCC-Ccc--cc----ccCCCCCeE
Q 003446 421 IEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYG-DFV--AE----PIPFAVPGI 493 (819)
Q Consensus 421 ~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~~--~~----~~~~~~p~~ 493 (819)
.+.|..+. ...+++|||+|++| |.|+|.+|..+|+++||.++|+||+.... ... +. .....||.+
T Consensus 21 ~~gC~~~~--~~~~~~g~I~Lv~R------G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v 92 (118)
T cd02127 21 LEACEELR--NIHDINGNIALIER------GGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAA 92 (118)
T ss_pred cccCCCCC--CccccCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEE
Confidence 46797532 24568999999998 68999999999999999999999986531 111 11 234578998
Q ss_pred EecCcchHHHHHHHHhhcc
Q 003446 494 LIPKVSTSEIILQYYEQQT 512 (819)
Q Consensus 494 ~i~~~~~~~~l~~~~~~~~ 512 (819)
+| +.++++.|++.+..+.
T Consensus 93 ~I-s~~dG~~L~~~l~~g~ 110 (118)
T cd02127 93 FL-LGKNGYMIRKTLERLG 110 (118)
T ss_pred Ee-cHHHHHHHHHHHHcCC
Confidence 87 7789999988876543
No 54
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.02 E-value=3.7e-05 Score=71.72 Aligned_cols=83 Identities=12% Similarity=0.021 Sum_probs=60.7
Q ss_pred cccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcc
Q 003446 420 YIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVS 499 (819)
Q Consensus 420 ~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~ 499 (819)
..++|.+..... .+++|||+|++| |.|.+.+|..+++++||+++|+||+....-.........+|.+.+ .+
T Consensus 40 ~~~gC~~~~~~~-~~~~g~IaLv~r------g~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~--~~ 110 (129)
T cd02124 40 ADDACQPLPDDT-PDLSGYIVLVRR------GTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT--PE 110 (129)
T ss_pred CcccCcCCCccc-ccccCeEEEEEC------CCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe--HH
Confidence 457898654433 368999999998 579999999999999999999999875321111223334565544 88
Q ss_pred hHHHHHHHHhhc
Q 003446 500 TSEIILQYYEQQ 511 (819)
Q Consensus 500 ~~~~l~~~~~~~ 511 (819)
+|+.|++.+..+
T Consensus 111 ~G~~l~~~l~~G 122 (129)
T cd02124 111 DGEAWIDALAAG 122 (129)
T ss_pred HHHHHHHHHhcC
Confidence 999999888654
No 55
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.02 E-value=1.6e-05 Score=74.61 Aligned_cols=74 Identities=9% Similarity=0.154 Sum_probs=58.0
Q ss_pred CCCCccCceEEEEEecCCccCCccc-----hHHHHHHHHhcCceEEEEEecCCCCCc---cccc-c-CCCCCeEEecCcc
Q 003446 430 FEPSLVQGSVVICTFSDGFYNQTST-----LTAVINTAITLGFMGFILIANSHYGDF---VAEP-I-PFAVPGILIPKVS 499 (819)
Q Consensus 430 ~~~~~~~Gkiv~~~~~~~~~~g~~~-----~~~~~~~~~~~Ga~g~i~~n~~~~~~~---~~~~-~-~~~~p~~~i~~~~ 499 (819)
+...+++|||+|++| |.|. |.+|.++|+++||.|+|+||+....+. .+.. . ...||.++| +.+
T Consensus 50 ~~~~d~~GkIaLI~R------G~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~i-s~~ 122 (139)
T cd04817 50 YICGGMAGKICLIER------GGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSV-DRA 122 (139)
T ss_pred ccCCCcCccEEEEEC------CCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEe-eHH
Confidence 445578999999999 5777 999999999999999999999843221 1222 1 468999998 778
Q ss_pred hHHHHHHHHhh
Q 003446 500 TSEIILQYYEQ 510 (819)
Q Consensus 500 ~~~~l~~~~~~ 510 (819)
++++|++.+..
T Consensus 123 dG~~L~~~l~~ 133 (139)
T cd04817 123 DGQALLAALGQ 133 (139)
T ss_pred HHHHHHHHhcC
Confidence 99999887743
No 56
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=97.99 E-value=3.7e-05 Score=72.58 Aligned_cols=85 Identities=16% Similarity=0.144 Sum_probs=64.0
Q ss_pred cccccCCCCCC-CCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCC-CCcc--ccccCCCCCeEEe
Q 003446 420 YIEECQYPEAF-EPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHY-GDFV--AEPIPFAVPGILI 495 (819)
Q Consensus 420 ~~~~C~~~~~~-~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-~~~~--~~~~~~~~p~~~i 495 (819)
..++|.+.... ...++.|+|+|++| |.|.|.+|..+|+.+||.++|+||+... .... .......+|.++|
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~R------G~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~I 116 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQR------GNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMI 116 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEE
Confidence 35679865542 34568999999998 6899999999999999999999998862 1111 1122346887776
Q ss_pred cCcchHHHHHHHHhhc
Q 003446 496 PKVSTSEIILQYYEQQ 511 (819)
Q Consensus 496 ~~~~~~~~l~~~~~~~ 511 (819)
+..+|+.|++++..+
T Consensus 117 -s~~~G~~l~~~l~~G 131 (138)
T cd02122 117 -TNPKGMEILELLERG 131 (138)
T ss_pred -cHHHHHHHHHHHHcC
Confidence 779999999988654
No 57
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=97.95 E-value=3.3e-05 Score=70.68 Aligned_cols=81 Identities=10% Similarity=0.147 Sum_probs=61.9
Q ss_pred cccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCc-cc----cccCCCCCeEE
Q 003446 420 YIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDF-VA----EPIPFAVPGIL 494 (819)
Q Consensus 420 ~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~~----~~~~~~~p~~~ 494 (819)
..+.|... +..+++|||+|+.| |.|+|.+|..+++++||+++|+||+....+. .+ ......+|.++
T Consensus 26 p~~gC~~~---~~~~l~gkIvLV~R------G~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~ 96 (117)
T cd04813 26 PTDACSLQ---EHAEIDGKVALVLR------GGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMF 96 (117)
T ss_pred CCCCCCCC---CcCCcCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEE
Confidence 34679644 45778999999998 6899999999999999999999998753211 11 12345789988
Q ss_pred ecCcchHHHHHHHHhh
Q 003446 495 IPKVSTSEIILQYYEQ 510 (819)
Q Consensus 495 i~~~~~~~~l~~~~~~ 510 (819)
+ +.+++++|..+...
T Consensus 97 I-s~~~g~~L~~l~~~ 111 (117)
T cd04813 97 T-SRTSYHLLSSLLPK 111 (117)
T ss_pred E-cHHHHHHHHHhccc
Confidence 8 67888888877654
No 58
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=97.93 E-value=4.4e-05 Score=70.42 Aligned_cols=83 Identities=13% Similarity=0.193 Sum_probs=62.0
Q ss_pred cccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCc-ccc--ccCCCCCeEEec
Q 003446 420 YIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDF-VAE--PIPFAVPGILIP 496 (819)
Q Consensus 420 ~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~~~--~~~~~~p~~~i~ 496 (819)
....|.+... . .+++|||++|+| +.|.+.+|..+++++||.|+|++|+...... .+. .....+|.++|
T Consensus 26 ~~~~C~~~~~-~-~~v~GkIvL~~r------g~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V- 96 (118)
T cd04818 26 NTDGCTAFTN-A-AAFAGKIALIDR------GTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMI- 96 (118)
T ss_pred cccccCCCCc-C-CCCCCEEEEEEC------CCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEe-
Confidence 3467965443 2 359999999987 4688999999999999999999998764111 111 12346898887
Q ss_pred CcchHHHHHHHHhhc
Q 003446 497 KVSTSEIILQYYEQQ 511 (819)
Q Consensus 497 ~~~~~~~l~~~~~~~ 511 (819)
+.++++.|++|++..
T Consensus 97 ~~~~g~~l~~~l~~g 111 (118)
T cd04818 97 SQADGDALKAALAAG 111 (118)
T ss_pred cHHHHHHHHHHHhcC
Confidence 789999999999754
No 59
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=97.92 E-value=3.9e-05 Score=71.42 Aligned_cols=82 Identities=13% Similarity=0.199 Sum_probs=62.0
Q ss_pred ccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCC-----Cc-cc--cc---cCCC
Q 003446 421 IEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYG-----DF-VA--EP---IPFA 489 (819)
Q Consensus 421 ~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-----~~-~~--~~---~~~~ 489 (819)
...|.... ....++|||++++| |.|+|.+|..+|+++||.++|++|+.... .. .+ .+ ....
T Consensus 27 ~~gC~~~~--~~~~~~gkIaLv~R------G~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~ 98 (126)
T cd02126 27 YRACSEIT--NAEEVKGKIAIMER------GDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVT 98 (126)
T ss_pred hhcccCCC--CccccCceEEEEEC------CCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCe
Confidence 46787432 24568999999999 68999999999999999999999876532 11 11 11 2457
Q ss_pred CCeEEecCcchHHHHHHHHhhc
Q 003446 490 VPGILIPKVSTSEIILQYYEQQ 511 (819)
Q Consensus 490 ~p~~~i~~~~~~~~l~~~~~~~ 511 (819)
||.++| +..+|+.|++++..+
T Consensus 99 IP~v~I-~~~dG~~L~~~l~~~ 119 (126)
T cd02126 99 IPVVFL-FSKEGSKLLAAIKEH 119 (126)
T ss_pred EEEEEE-EHHHHHHHHHHHHhC
Confidence 899887 778999999988754
No 60
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=97.89 E-value=4.9e-05 Score=70.81 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=63.9
Q ss_pred cccccCCCC-CCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCcccc-----ccCCCCCeE
Q 003446 420 YIEECQYPE-AFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAE-----PIPFAVPGI 493 (819)
Q Consensus 420 ~~~~C~~~~-~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~-----~~~~~~p~~ 493 (819)
....|.... .+...+++||||+|.+ |.|.+.+|..+++.+||.|+|++|+......... .....+|.+
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~------g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~ 102 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRR------GGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTV 102 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEEC------CCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEE
Confidence 445685332 1456779999999987 5688999999999999999999998763211111 134578988
Q ss_pred EecCcchHHHHHHHHhhc
Q 003446 494 LIPKVSTSEIILQYYEQQ 511 (819)
Q Consensus 494 ~i~~~~~~~~l~~~~~~~ 511 (819)
.| +.++++.|++|+.+.
T Consensus 103 ~i-s~~~g~~l~~~~~~~ 119 (126)
T cd00538 103 GI-SYADGEALLSLLEAG 119 (126)
T ss_pred Ee-CHHHHHHHHHHHhcC
Confidence 88 779999999999753
No 61
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=97.89 E-value=5.6e-05 Score=70.32 Aligned_cols=84 Identities=13% Similarity=0.076 Sum_probs=62.7
Q ss_pred ccccCCCCCCC-CC----ccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccc----------cc
Q 003446 421 IEECQYPEAFE-PS----LVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVA----------EP 485 (819)
Q Consensus 421 ~~~C~~~~~~~-~~----~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----------~~ 485 (819)
.+.|.+..... +. ...++|+|++| |.|+|.+|..+|+++||.++|+||+....-..+ ..
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~R------G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~ 95 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDR------GGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYI 95 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEEC------CCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccC
Confidence 46787665433 22 36889999998 689999999999999999999999865311111 11
Q ss_pred cCCCCCeEEecCcchHHHHHHHHhhc
Q 003446 486 IPFAVPGILIPKVSTSEIILQYYEQQ 511 (819)
Q Consensus 486 ~~~~~p~~~i~~~~~~~~l~~~~~~~ 511 (819)
....||.++| +.++++.|++.+..+
T Consensus 96 ~~i~IP~v~I-s~~~G~~L~~~l~~g 120 (127)
T cd02125 96 EKITIPSALI-TKAFGEKLKKAISNG 120 (127)
T ss_pred CCceEeEEEE-CHHHHHHHHHHHhcC
Confidence 2346898888 778999999888654
No 62
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.86 E-value=6.1e-05 Score=71.44 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=60.9
Q ss_pred ccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccc-c----ccCCCCCeEEe
Q 003446 421 IEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVA-E----PIPFAVPGILI 495 (819)
Q Consensus 421 ~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~-~----~~~~~~p~~~i 495 (819)
.+.|.+.. .+++|||+|++| |.|+|.+|..+++++||.++|+||+........ . .....||.++|
T Consensus 48 ~~gC~~~~----~~~~g~IvLV~R------G~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~I 117 (139)
T cd02132 48 LDCCSPST----SKLSGSIALVER------GECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMI 117 (139)
T ss_pred ccccCCCC----cccCCeEEEEEC------CCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEe
Confidence 46787543 368999999998 789999999999999999999999775311111 1 11357897766
Q ss_pred cCcchHHHHHHHHhhc
Q 003446 496 PKVSTSEIILQYYEQQ 511 (819)
Q Consensus 496 ~~~~~~~~l~~~~~~~ 511 (819)
+..+++.|++++...
T Consensus 118 -s~~~G~~L~~~l~~g 132 (139)
T cd02132 118 -PQSAGDALNKSLDQG 132 (139)
T ss_pred -cHHHHHHHHHHHHcC
Confidence 779999999988654
No 63
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=97.82 E-value=0.00024 Score=65.93 Aligned_cols=81 Identities=17% Similarity=0.234 Sum_probs=60.2
Q ss_pred cccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCc---cccccCCCCCeEEecCc
Q 003446 422 EECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDF---VAEPIPFAVPGILIPKV 498 (819)
Q Consensus 422 ~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~---~~~~~~~~~p~~~i~~~ 498 (819)
..|.+. .+ +.+++|||++++| |.|.+.+|+.+++++||.++|+||+...... ...+....+|.++| +.
T Consensus 32 ~gC~~~-~~-~~~~~gkIvlv~r------g~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~I-s~ 102 (122)
T cd02130 32 LGCDAA-DY-PASVAGNIALIER------GECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGI-SQ 102 (122)
T ss_pred CCCCcc-cC-CcCCCCEEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEe-cH
Confidence 467632 22 2468999999998 6789999999999999999999998732111 11223456888887 77
Q ss_pred chHHHHHHHHhhc
Q 003446 499 STSEIILQYYEQQ 511 (819)
Q Consensus 499 ~~~~~l~~~~~~~ 511 (819)
++++.|++.+.+.
T Consensus 103 ~~G~~L~~~l~~g 115 (122)
T cd02130 103 EDGKALVAALANG 115 (122)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988764
No 64
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=97.77 E-value=8.9e-05 Score=71.48 Aligned_cols=84 Identities=14% Similarity=0.254 Sum_probs=63.5
Q ss_pred ccccCCCCC--CCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccccc-----cCCCCCeE
Q 003446 421 IEECQYPEA--FEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEP-----IPFAVPGI 493 (819)
Q Consensus 421 ~~~C~~~~~--~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~-----~~~~~p~~ 493 (819)
.++|..... .....+.|||++++| |.|+|.+|..+|+++||.++|++|+.......+.. ....||.+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~R------G~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v 123 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRR------GNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSV 123 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEEC------CCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEE
Confidence 457874433 133678999999998 68999999999999999999999987532222211 24579999
Q ss_pred EecCcchHHHHHHHHhhc
Q 003446 494 LIPKVSTSEIILQYYEQQ 511 (819)
Q Consensus 494 ~i~~~~~~~~l~~~~~~~ 511 (819)
+| +.++++.|.+++...
T Consensus 124 ~I-s~~dg~~L~~~l~~~ 140 (153)
T cd02123 124 FV-GKSTGEILKKYASYE 140 (153)
T ss_pred Ee-eHHHHHHHHHHHhcC
Confidence 98 778999998888654
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.42 E-value=0.0017 Score=60.55 Aligned_cols=75 Identities=11% Similarity=0.145 Sum_probs=56.0
Q ss_pred CCCCccCceEEEEEecCCccCCcc--chHHHHHHHHhcCceEEEEEecCCCCCcc-----c-cccCCCCCeEEecCcchH
Q 003446 430 FEPSLVQGSVVICTFSDGFYNQTS--TLTAVINTAITLGFMGFILIANSHYGDFV-----A-EPIPFAVPGILIPKVSTS 501 (819)
Q Consensus 430 ~~~~~~~Gkiv~~~~~~~~~~g~~--~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-----~-~~~~~~~p~~~i~~~~~~ 501 (819)
+...+++||||++.++ .+ .+.+|+.++++.||+|+|++|+....-.. . ......+|.+.| +.+++
T Consensus 38 ~~~~~v~GkIvlv~~g------~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~I-s~edg 110 (127)
T cd04819 38 FDGLDLEGKIAVVKRD------DPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASV-SGEDG 110 (127)
T ss_pred cCCCCCCCeEEEEEcC------CCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEE-eHHHH
Confidence 3455699999999984 44 67899999999999999999876432110 0 122356999987 78899
Q ss_pred HHHHHHHhhc
Q 003446 502 EIILQYYEQQ 511 (819)
Q Consensus 502 ~~l~~~~~~~ 511 (819)
+.|...++.+
T Consensus 111 ~~L~~~l~~g 120 (127)
T cd04819 111 LRLARVAERN 120 (127)
T ss_pred HHHHHHHhcC
Confidence 9999888653
No 66
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.71 E-value=0.044 Score=48.86 Aligned_cols=82 Identities=21% Similarity=0.319 Sum_probs=61.9
Q ss_pred cceEEEEEEEEEecCCceeEEEEEeCCCCceEEEeCCeEEEeCCcEEEEEEEEEEecCCCCeEEEEEEEEeCCccEEEEe
Q 003446 731 AKSLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQAIGDFSFGEIVLTGSLNHIVRIP 810 (819)
Q Consensus 731 ~~~~~~~~tv~N~g~~~~ty~~~~~~~~g~~v~~~p~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~~~~~~l~~P 810 (819)
+...+.+++|+|.|..+..|++.......-.++++|..-.++||++.++.|+|.++...+. +++.|.+.-. +..+.+|
T Consensus 19 g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~~~~g~-~~~~l~i~~e-~~~~~i~ 96 (102)
T PF14874_consen 19 GQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPTKPLGD-YEGSLVITTE-GGSFEIP 96 (102)
T ss_pred CCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeCCCCce-EEEEEEEEEC-CeEEEEE
Confidence 3445566799999999999998764423445778888888999999999999997665454 5699998754 4578888
Q ss_pred EEEE
Q 003446 811 LSVK 814 (819)
Q Consensus 811 ~~~~ 814 (819)
+-..
T Consensus 97 v~a~ 100 (102)
T PF14874_consen 97 VKAE 100 (102)
T ss_pred EEEE
Confidence 6544
No 67
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=96.18 E-value=0.016 Score=49.04 Aligned_cols=58 Identities=19% Similarity=0.303 Sum_probs=37.2
Q ss_pred ceEEEEEEEEEecCCc-eeEEEEEeCCCCceEEEeCCeE-EEeCCcEEEEEEEEEEecCC
Q 003446 732 KSLILQRSLKNVGNKT-ETYLTSVVHPNGTTVSLYPPWF-TIAPQGTQDLAIQFNVTQAI 789 (819)
Q Consensus 732 ~~~~~~~tv~N~g~~~-~ty~~~~~~~~g~~v~~~p~~~-tv~~g~~~~~~v~~~~~~~~ 789 (819)
...+++.+|+|.|..+ ...+++...|.|-++.+.+.++ .|+||++++++++|++|...
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a 64 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADA 64 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT-
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCC
Confidence 4567888999999765 4578888889998876777665 68999999999999999863
No 68
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=95.81 E-value=0.028 Score=52.92 Aligned_cols=75 Identities=11% Similarity=0.106 Sum_probs=53.4
Q ss_pred CCCCccCceEEEEEecCCccCCcc------chHHH-------HHHHHhcCceEEEEEecCCC------CCcccc-ccCCC
Q 003446 430 FEPSLVQGSVVICTFSDGFYNQTS------TLTAV-------INTAITLGFMGFILIANSHY------GDFVAE-PIPFA 489 (819)
Q Consensus 430 ~~~~~~~Gkiv~~~~~~~~~~g~~------~~~~~-------~~~~~~~Ga~g~i~~n~~~~------~~~~~~-~~~~~ 489 (819)
+...+++||||++.+ +.| .+..| ...+++.||.++|++|.... .+.... .....
T Consensus 33 ~~~~~v~GKIvlv~~------~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~ 106 (134)
T cd04815 33 APAGAVKGKIVFFNQ------PMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPK 106 (134)
T ss_pred cchhhcCCeEEEecC------CccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCC
Confidence 345679999999988 345 56666 68899999999999996421 122112 22346
Q ss_pred CCeEEecCcchHHHHHHHHhhc
Q 003446 490 VPGILIPKVSTSEIILQYYEQQ 511 (819)
Q Consensus 490 ~p~~~i~~~~~~~~l~~~~~~~ 511 (819)
+|.+.| +.+++..|...+...
T Consensus 107 IP~v~i-s~ed~~~L~r~l~~g 127 (134)
T cd04815 107 IPAAAI-SVEDADMLERLAARG 127 (134)
T ss_pred CCEEEe-chhcHHHHHHHHhCC
Confidence 999997 778888888777654
No 69
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=95.76 E-value=0.035 Score=52.43 Aligned_cols=69 Identities=19% Similarity=0.101 Sum_probs=47.7
Q ss_pred ceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccC------Cc------cchHHHHHHHH
Q 003446 396 FLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYN------QT------STLTAVINTAI 463 (819)
Q Consensus 396 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~------g~------~~~~~~~~~~~ 463 (819)
...++++.+.... ...|. ..++...+++||||++.++..... +. .++..|...++
T Consensus 20 ~~aelVfvGyGi~------------a~~~~-~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~ 86 (142)
T cd04814 20 KDAPLVFVGYGIK------------APELS-WDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAA 86 (142)
T ss_pred cceeeEEecCCcC------------CCCCC-hhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHH
Confidence 5677777664321 23454 346667789999999988522100 00 15778999999
Q ss_pred hcCceEEEEEecCC
Q 003446 464 TLGFMGFILIANSH 477 (819)
Q Consensus 464 ~~Ga~g~i~~n~~~ 477 (819)
+.||.|+|++|+..
T Consensus 87 ~~GA~gvIii~~~~ 100 (142)
T cd04814 87 RHGAAGVLIVHELA 100 (142)
T ss_pred HCCCcEEEEEeCCC
Confidence 99999999999875
No 70
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=95.67 E-value=0.083 Score=48.69 Aligned_cols=69 Identities=19% Similarity=0.313 Sum_probs=50.6
Q ss_pred cceEEEEEEEEEecCCceeEEEEEeC----CCC--------------ce------EEEeCCeEEEeCCcEEEEEEEEEEe
Q 003446 731 AKSLILQRSLKNVGNKTETYLTSVVH----PNG--------------TT------VSLYPPWFTIAPQGTQDLAIQFNVT 786 (819)
Q Consensus 731 ~~~~~~~~tv~N~g~~~~ty~~~~~~----~~g--------------~~------v~~~p~~~tv~~g~~~~~~v~~~~~ 786 (819)
..++++.++|+|.++++.+|.+.... ..| +. +++ |..|+|+||++++|+++++.|
T Consensus 26 ~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 26 GQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTLPPNESKTVTFTIKMP 104 (121)
T ss_pred CCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEECCCCEEEEEEEEEcC
Confidence 45678999999999999999987631 111 11 222 556999999999999999999
Q ss_pred cCC-CCeEEEEEEEE
Q 003446 787 QAI-GDFSFGEIVLT 800 (819)
Q Consensus 787 ~~~-~~~~~G~i~~~ 800 (819)
... .+.+-|-|.++
T Consensus 105 ~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 105 KKAFDGIILGGIYFS 119 (121)
T ss_pred CCCcCCEEEeeEEEE
Confidence 862 34444777765
No 71
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.35 E-value=0.06 Score=51.47 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=41.1
Q ss_pred cccCCCCCCCCCccCceEEEEEecCCc------------cCCccchHHHHHHHHhcCceEEEEEecCCC
Q 003446 422 EECQYPEAFEPSLVQGSVVICTFSDGF------------YNQTSTLTAVINTAITLGFMGFILIANSHY 478 (819)
Q Consensus 422 ~~C~~~~~~~~~~~~Gkiv~~~~~~~~------------~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 478 (819)
..|. ..++...+++||||++.++... ....+++..|..+|...||.|+|+||++..
T Consensus 34 ~~~~-~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~ 101 (151)
T cd04822 34 PELG-YDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNS 101 (151)
T ss_pred cccc-hhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 3453 3355567899999999886320 011257789999999999999999998764
No 72
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=95.31 E-value=0.087 Score=48.41 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=40.6
Q ss_pred EEEEEEEEecCCceeEEEEEeCCCCceEEEeCCeEEEeCCcEEEEEEEEEEecCC
Q 003446 735 ILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQAI 789 (819)
Q Consensus 735 ~~~~tv~N~g~~~~ty~~~~~~~~g~~v~~~p~~~tv~~g~~~~~~v~~~~~~~~ 789 (819)
.++..|.|.+..+.+|++++..++++++......++|+||++.++.|.+.+|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEECHHH
Confidence 5677999999999999999998889998665589999999999999999999863
No 73
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=95.15 E-value=0.028 Score=55.35 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=35.5
Q ss_pred CCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCC
Q 003446 432 PSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSH 477 (819)
Q Consensus 432 ~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 477 (819)
..+++|||+|+.+ |.+.+.+|+.+|+++||+|+|+|+++.
T Consensus 51 gv~v~GkIvLvr~------G~~~~~~Kv~~A~~~GA~gvIiy~Dp~ 90 (183)
T cd02128 51 GVSVNGSVVLVRA------GKISFAEKVANAEKLGAVGVLIYPDPA 90 (183)
T ss_pred CCCCCCeEEEEEC------CCCCHHHHHHHHHHCCCEEEEEecCHH
Confidence 3468999999998 567889999999999999999999863
No 74
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.06 E-value=0.073 Score=49.97 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=39.9
Q ss_pred cccCCCCCCCCCccCceEEEEEecCCccCC------ccchHHHHHHHHhcCceEEEEEecCC
Q 003446 422 EECQYPEAFEPSLVQGSVVICTFSDGFYNQ------TSTLTAVINTAITLGFMGFILIANSH 477 (819)
Q Consensus 422 ~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g------~~~~~~~~~~~~~~Ga~g~i~~n~~~ 477 (819)
..|. ..++...+++||||++.++.....+ ...+..|.++|...||.|+|+++++.
T Consensus 36 ~~~~-~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 36 PELG-HDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred cCcC-HhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 3454 3455567899999999985321111 12477899999999999999999875
No 75
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=93.36 E-value=0.11 Score=49.01 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=34.2
Q ss_pred CccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCC
Q 003446 433 SLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSH 477 (819)
Q Consensus 433 ~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 477 (819)
-+++|||+++.. |......|+++|+..||.|+|||.++.
T Consensus 37 V~v~GkIvi~Ry------G~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKL------GQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEec------cCcchHHHHHHHHHCCCeEEEEecChh
Confidence 568999999998 455678899999999999999999875
No 76
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=92.06 E-value=0.23 Score=50.63 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=34.9
Q ss_pred CCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCC
Q 003446 432 PSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHY 478 (819)
Q Consensus 432 ~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 478 (819)
..+++||||++.+ |.+...+|+.+|+..||+|+|+|+++..
T Consensus 67 gvdv~GKIvLvr~------G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 67 GIDVKGKIVIARY------GGIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred CCCCCCeEEEEEC------CCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 4579999999987 4556678999999999999999998753
No 77
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=91.94 E-value=0.45 Score=52.70 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=52.2
Q ss_pred CCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCC-----CccccccCCCCCeEEecCcchHHHHHH
Q 003446 432 PSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYG-----DFVAEPIPFAVPGILIPKVSTSEIILQ 506 (819)
Q Consensus 432 ~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-----~~~~~~~~~~~p~~~i~~~~~~~~l~~ 506 (819)
....+||+++..| |.|.|.+|...|+++||.++++.|+.... +.........||..+| +.+++..+.+
T Consensus 91 ~~kl~~~~~~v~R------GnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi-~~~~~~~l~~ 163 (541)
T KOG2442|consen 91 QSKLSGKVALVFR------GNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMI-SYSDGRDLNK 163 (541)
T ss_pred CccccceeEEEec------ccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEE-EhhhHHHHHh
Confidence 4568999999998 79999999999999999999999995421 1112234567999888 5566666654
No 78
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=91.14 E-value=4.8 Score=37.00 Aligned_cols=67 Identities=13% Similarity=0.192 Sum_probs=47.5
Q ss_pred EEEEEEEEEecCCceeEEEEEeC---CCC----ceEEEeCCeEEEeCCcEEEEEEEEEEecC-CCCeEEEEEEEEe
Q 003446 734 LILQRSLKNVGNKTETYLTSVVH---PNG----TTVSLYPPWFTIAPQGTQDLAIQFNVTQA-IGDFSFGEIVLTG 801 (819)
Q Consensus 734 ~~~~~tv~N~g~~~~ty~~~~~~---~~g----~~v~~~p~~~tv~~g~~~~~~v~~~~~~~-~~~~~~G~i~~~~ 801 (819)
...+++|+|.++.+..+.+.+.. ... -.+-++|..|+++||+++.|.| +..+.. .+....-+|.++.
T Consensus 16 ~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~~ 90 (122)
T PF00345_consen 16 RSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRGSKLPIDRESLYRLSFRE 90 (122)
T ss_dssp SEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EECSGS-SSS-EEEEEEEEE
T ss_pred CEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-EecCCCCCCceEEEEEEEEE
Confidence 45567999999988888777764 111 1577999999999999999999 664332 3333445677765
No 79
>COG1470 Predicted membrane protein [Function unknown]
Probab=90.30 E-value=2.8 Score=46.68 Aligned_cols=57 Identities=16% Similarity=0.301 Sum_probs=48.6
Q ss_pred ceEEEEEEEEEecCCceeEEEEEe-CCCCceEEEeC-----CeEEEeCCcEEEEEEEEEEecC
Q 003446 732 KSLILQRSLKNVGNKTETYLTSVV-HPNGTTVSLYP-----PWFTIAPQGTQDLAIQFNVTQA 788 (819)
Q Consensus 732 ~~~~~~~tv~N~g~~~~ty~~~~~-~~~g~~v~~~p-----~~~tv~~g~~~~~~v~~~~~~~ 788 (819)
.+..+++++.|.|..+.+|.++.. .|++-+..|.- .++.|.||++++|+|.+.++..
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~n 346 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLN 346 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCC
Confidence 455788899999999999999998 78887776653 3688899999999999999886
No 80
>COG1470 Predicted membrane protein [Function unknown]
Probab=89.93 E-value=1.6 Score=48.58 Aligned_cols=71 Identities=18% Similarity=0.320 Sum_probs=54.0
Q ss_pred cceEEEEEEEEEecCCcee-EEEEEeCCCCceEEEeCCeE-EEeCCcEEEEEEEEEEecCC--CCeEEEEEEEEeC
Q 003446 731 AKSLILQRSLKNVGNKTET-YLTSVVHPNGTTVSLYPPWF-TIAPQGTQDLAIQFNVTQAI--GDFSFGEIVLTGS 802 (819)
Q Consensus 731 ~~~~~~~~tv~N~g~~~~t-y~~~~~~~~g~~v~~~p~~~-tv~~g~~~~~~v~~~~~~~~--~~~~~G~i~~~~~ 802 (819)
....++...+.|.|+.+-| -++++..|.|-++.|++.++ .++||++++|++|+++|... +.|. =.|.-++|
T Consensus 396 Gee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~-i~i~~ksD 470 (513)
T COG1470 396 GEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYR-ITITAKSD 470 (513)
T ss_pred CccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEE-EEEEEeec
Confidence 3456788899999987644 56888899999999998866 45899999999999999874 4554 33444433
No 81
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=89.33 E-value=3.1 Score=38.94 Aligned_cols=66 Identities=24% Similarity=0.323 Sum_probs=48.8
Q ss_pred EEEEEEEecCCc-eeEEEEEeCCCCceEEEeCCeEEEeCCcEEEEEEEEEEecCCCCeEEEEEEEEe
Q 003446 736 LQRSLKNVGNKT-ETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQAIGDFSFGEIVLTG 801 (819)
Q Consensus 736 ~~~tv~N~g~~~-~ty~~~~~~~~g~~v~~~p~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~ 801 (819)
+.+.|-|..+.. +..++....-...++--.|..+++.|++.+++..+|++.+...++.+|+|++.+
T Consensus 73 LDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL~P~~~~~i~~~iKVsStetGvIfG~I~Yd~ 139 (140)
T PF07718_consen 73 LDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITLAPHGFARIKATIKVSSTETGVIFGNIVYDG 139 (140)
T ss_pred EEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceeeCCCcEEEEEEEEEEEeccCCEEEEEEEEec
Confidence 344556665432 223344434455676667999999999999999999999988889999999864
No 82
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=88.39 E-value=6.5 Score=33.96 Aligned_cols=63 Identities=21% Similarity=0.154 Sum_probs=42.7
Q ss_pred eEEEEEEEEEecCCceeEEEEEeCCCCceEEEeCCeEEEeCCcEEEEEEEEEEecCCCCeEEEEEEEEeCCc
Q 003446 733 SLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQAIGDFSFGEIVLTGSLN 804 (819)
Q Consensus 733 ~~~~~~tv~N~g~~~~ty~~~~~~~~g~~v~~~p~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~~~~ 804 (819)
...+.++++|.|....++++.-..-. .-.|.+++|+||++.++.+.+.. .+.||+ |.+++.++
T Consensus 19 ~g~l~l~l~N~g~~~~~~~v~~~~y~----~~~~~~~~v~ag~~~~~~w~l~~---s~gwYD--l~v~~~~~ 81 (89)
T PF05506_consen 19 TGNLRLTLSNPGSAAVTFTVYDNAYG----GGGPWTYTVAAGQTVSLTWPLAA---SGGWYD--LTVTGPNG 81 (89)
T ss_pred CCEEEEEEEeCCCCcEEEEEEeCCcC----CCCCEEEEECCCCEEEEEEeecC---CCCcEE--EEEEcCCC
Confidence 34678899999998888877652111 12367899999999888887732 345554 66665444
No 83
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=87.83 E-value=2 Score=48.58 Aligned_cols=55 Identities=11% Similarity=0.071 Sum_probs=48.3
Q ss_pred EEEEEEEEEecCCceeEEEEEeCCCCceEEEeCCeEEEeCCcEEEEEEEEEEecC
Q 003446 734 LILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQA 788 (819)
Q Consensus 734 ~~~~~tv~N~g~~~~ty~~~~~~~~g~~v~~~p~~~tv~~g~~~~~~v~~~~~~~ 788 (819)
..++..+.|.+.++.+|++++...+++++...++.|+|+||++.++.|.+.++..
T Consensus 348 N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~~~ 402 (434)
T TIGR02745 348 NTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTPPD 402 (434)
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEechh
Confidence 3567799999999999999999888888887656899999999999999999864
No 84
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.45 E-value=1.1 Score=48.61 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=49.8
Q ss_pred CccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccc---cccCCCCCeEEecCcchHHHHHHHH
Q 003446 433 SLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVA---EPIPFAVPGILIPKVSTSEIILQYY 508 (819)
Q Consensus 433 ~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~---~~~~~~~p~~~i~~~~~~~~l~~~~ 508 (819)
......++++.| |+|+|.+|+.+|+++|..++|+||+........ .+....++.+++ +...++.+..|.
T Consensus 76 ~~~~~~laLI~R------g~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~v-s~~~ge~l~~~~ 147 (348)
T KOG4628|consen 76 TRSTSFLALIRR------GGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFV-SVFSGELLSSYA 147 (348)
T ss_pred CCCcceEEEEEc------cCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEE-eeehHHHHHHhh
Confidence 345668889998 679999999999999999999999876432221 334455666666 445666666654
No 85
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=82.58 E-value=5.5 Score=33.69 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=35.9
Q ss_pred eEEEeCCeEEEeCCcEEEEEEEEEEecCCCCeEEEEEEEEeCCccEEE
Q 003446 761 TVSLYPPWFTIAPQGTQDLAIQFNVTQAIGDFSFGEIVLTGSLNHIVR 808 (819)
Q Consensus 761 ~v~~~p~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~~~~~~l~ 808 (819)
.|+++|..+++..|+++.|++++......+ ...+.|++++....+
T Consensus 4 ~i~i~p~~~~l~~G~~~~l~a~~~~~~~~~---~~~v~w~Ssn~~vat 48 (81)
T smart00635 4 SVTVTPTTASVKKGLTLQLTATVTPSSAKV---TGKVTWTSSNPSVAT 48 (81)
T ss_pred EEEEeCCeeEEeCCCeEEEEEEEECCCCCc---cceEEEEECCCcEEE
Confidence 578899999999999999999976544332 578999988776666
No 86
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=82.30 E-value=3.1 Score=40.15 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=35.6
Q ss_pred CCCCCccCceEEEEEecCCc-cCC------c------cchHHHHHHHHhcCceEEEEEecCC
Q 003446 429 AFEPSLVQGSVVICTFSDGF-YNQ------T------STLTAVINTAITLGFMGFILIANSH 477 (819)
Q Consensus 429 ~~~~~~~~Gkiv~~~~~~~~-~~g------~------~~~~~~~~~~~~~Ga~g~i~~n~~~ 477 (819)
++...+++||||++..+... ..+ . .+...|.+.+...||.|+|++++..
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 55667899999999875321 111 0 1345689999999999999998754
No 87
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=82.11 E-value=6.9 Score=34.91 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=40.7
Q ss_pred EEEEEEEEEecCCceeEEEEEeCCCCceEEEeCCeEEEeCCcEEEEEEEEEEec
Q 003446 734 LILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQ 787 (819)
Q Consensus 734 ~~~~~tv~N~g~~~~ty~~~~~~~~g~~v~~~p~~~tv~~g~~~~~~v~~~~~~ 787 (819)
.+..++|+|.++....|++....+.. ..+.|..-.|.||++.++.|++....
T Consensus 20 ~~~~l~l~N~s~~~i~fKiktt~~~~--y~v~P~~G~i~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 20 QSCELTLTNPSDKPIAFKIKTTNPNR--YRVKPSYGIIEPGESVEITITFQPFD 71 (109)
T ss_dssp EEEEEEEEE-SSSEEEEEEEES-TTT--EEEESSEEEE-TTEEEEEEEEE-SSS
T ss_pred EEEEEEEECCCCCcEEEEEEcCCCce--EEecCCCEEECCCCEEEEEEEEEecc
Confidence 45567999999999999999887764 56779999999999999999998744
No 88
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=77.76 E-value=14 Score=38.13 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=45.7
Q ss_pred EEEEEEEEEecCCceeEEEEEe---CC---C----------CceEEEeCCeEEEeCCcEEEEEEEEEEecCCCCeEEEEE
Q 003446 734 LILQRSLKNVGNKTETYLTSVV---HP---N----------GTTVSLYPPWFTIAPQGTQDLAIQFNVTQAIGDFSFGEI 797 (819)
Q Consensus 734 ~~~~~tv~N~g~~~~ty~~~~~---~~---~----------g~~v~~~p~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i 797 (819)
....++|.|.|+++..+++.+. .| . .-.+-++|..|+|+||+++.|.|.-.-+...+.+| +|
T Consensus 33 ~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q~IRli~lg~~~kE~~Y--Rl 110 (234)
T PRK15308 33 EATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTRTVRVISLQAPEREEAW--RV 110 (234)
T ss_pred ceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeEEEEEEEcCCCCcEEEE--EE
Confidence 3445699999998888887753 11 1 11477899999999999999998765544333333 56
Q ss_pred EEEe
Q 003446 798 VLTG 801 (819)
Q Consensus 798 ~~~~ 801 (819)
.|.+
T Consensus 111 ~~~p 114 (234)
T PRK15308 111 YFEP 114 (234)
T ss_pred EEEe
Confidence 6654
No 89
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=75.21 E-value=19 Score=31.26 Aligned_cols=53 Identities=15% Similarity=0.290 Sum_probs=33.7
Q ss_pred cceEEEEEEEEEecCCc-eeEEEEEeCCCCceEEEeCCeE-EEeCCcEEEEEEEEEEe
Q 003446 731 AKSLILQRSLKNVGNKT-ETYLTSVVHPNGTTVSLYPPWF-TIAPQGTQDLAIQFNVT 786 (819)
Q Consensus 731 ~~~~~~~~tv~N~g~~~-~ty~~~~~~~~g~~v~~~p~~~-tv~~g~~~~~~v~~~~~ 786 (819)
....+++.+|+|.|... ..+++.+... +..+ ....+ .|+||+++++++++.++
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCcCCCcEEEEEEEEEeC
Confidence 45567888999999864 4566665433 3233 22334 67899999999999988
No 90
>PLN03080 Probable beta-xylosidase; Provisional
Probab=67.94 E-value=17 Score=44.77 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=47.0
Q ss_pred eEEEEEEEEEecCCceeEEEEE--eCCCC-ce--EE-E-eCCeEEEeCCcEEEEEEEEEE-ecC-----CCCeE--EEE-
Q 003446 733 SLILQRSLKNVGNKTETYLTSV--VHPNG-TT--VS-L-YPPWFTIAPQGTQDLAIQFNV-TQA-----IGDFS--FGE- 796 (819)
Q Consensus 733 ~~~~~~tv~N~g~~~~ty~~~~--~~~~g-~~--v~-~-~p~~~tv~~g~~~~~~v~~~~-~~~-----~~~~~--~G~- 796 (819)
..+++++|||+|+.+....+.+ ..|.+ .. ++ + -=+++.|+|||+++|++++.. ..- .+.|. .|.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~y 764 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTASGRSTETEIVVDPCKHLSVANEEGKRVLPLGDH 764 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEeeCCCCEEEEEEEeCchHHceEEcCCCcEEEeCccE
Confidence 3578889999999776655543 22321 10 00 0 014688999999999999986 321 12232 233
Q ss_pred EEEEeCCccEEEEe
Q 003446 797 IVLTGSLNHIVRIP 810 (819)
Q Consensus 797 i~~~~~~~~~l~~P 810 (819)
-++.|+..|.|+++
T Consensus 765 ~l~vG~~~~~~~~~ 778 (779)
T PLN03080 765 VLMLGDLEHSLSIE 778 (779)
T ss_pred EEEEeCCccceEEe
Confidence 34456667777765
No 91
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=66.96 E-value=36 Score=31.64 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=46.2
Q ss_pred ceEEEEEEEEEecCCceeEEEE------EeCCCCceEE--E-----eCCeEEEeCCcEEEEEEEEEEecCCCC---eEEE
Q 003446 732 KSLILQRSLKNVGNKTETYLTS------VVHPNGTTVS--L-----YPPWFTIAPQGTQDLAIQFNVTQAIGD---FSFG 795 (819)
Q Consensus 732 ~~~~~~~tv~N~g~~~~ty~~~------~~~~~g~~v~--~-----~p~~~tv~~g~~~~~~v~~~~~~~~~~---~~~G 795 (819)
+.+.+.+++||.|+.+ .++. .....|..+. . .+..++|+||++..+.|+.......+. ...-
T Consensus 18 g~~~~~l~~tN~s~~~--C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~~~~~~~~~~~~~~ 95 (131)
T PF14016_consen 18 GQRHATLTFTNTSDTP--CTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSNVGSGGGCKPVTPA 95 (131)
T ss_pred CccEEEEEEEECCCCc--EEeccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEecCCCCCCcCccccC
Confidence 4457778999998743 3332 1112222111 1 256799999999999999988665322 2223
Q ss_pred EEEEEe-CCccEEEEeE
Q 003446 796 EIVLTG-SLNHIVRIPL 811 (819)
Q Consensus 796 ~i~~~~-~~~~~l~~P~ 811 (819)
.|.++. ++...+.+|+
T Consensus 96 ~l~V~~p~~~~~~~v~~ 112 (131)
T PF14016_consen 96 GLTVTPPGGTAPVTVPW 112 (131)
T ss_pred EEEEECCCCCccEEEeC
Confidence 344443 3445677765
No 92
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=66.54 E-value=46 Score=28.34 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=27.7
Q ss_pred EEEEEEEEecCCceeEE--------EEEeCCCCceEE-------Ee--CCeEEEeCCcEEEEEEEEEEec
Q 003446 735 ILQRSLKNVGNKTETYL--------TSVVHPNGTTVS-------LY--PPWFTIAPQGTQDLAIQFNVTQ 787 (819)
Q Consensus 735 ~~~~tv~N~g~~~~ty~--------~~~~~~~g~~v~-------~~--p~~~tv~~g~~~~~~v~~~~~~ 787 (819)
.++.+|+|.++.+.+.+ +.+..+.|-.|- |. -...+++||++.++..++....
T Consensus 3 ~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS--
T ss_pred EEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCC
Confidence 45678888888665543 333333443321 11 2368999999999999987654
No 93
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=65.53 E-value=19 Score=26.72 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=26.7
Q ss_pred EEEEEecCCceeEEEEEeCCCCceEEEeCCeEEEeCCcEEEEEEEE
Q 003446 738 RSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQF 783 (819)
Q Consensus 738 ~tv~N~g~~~~ty~~~~~~~~g~~v~~~p~~~tv~~g~~~~~~v~~ 783 (819)
.+++|.|+.+..-+ .++..=|- ..++.++=.++||++..+.|++
T Consensus 2 F~~~N~g~~~L~I~-~v~tsCgC-t~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVIT-DVQTSCGC-TTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEE-EeeEccCC-EEeeCCcceECCCCEEEEEEEC
Confidence 47899998665432 11222222 2333455668999999999874
No 94
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=64.78 E-value=27 Score=37.88 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=37.5
Q ss_pred eEEEEEEEEEecCCceeEEEEEeCC----CCceEEEeCC--------------eEEEeCCcEEEEEEEEEEe
Q 003446 733 SLILQRSLKNVGNKTETYLTSVVHP----NGTTVSLYPP--------------WFTIAPQGTQDLAIQFNVT 786 (819)
Q Consensus 733 ~~~~~~tv~N~g~~~~ty~~~~~~~----~g~~v~~~p~--------------~~tv~~g~~~~~~v~~~~~ 786 (819)
...++++|+|..+.+.+-++..+.| ..++|++... .++|+||+++++.+.+.+.
T Consensus 243 ~~~~~itv~N~~~~~v~v~v~d~iPvs~~~~I~V~~~~~~~~~~~~~~g~~~W~~~l~~g~~~~l~~~y~v~ 314 (317)
T PF13598_consen 243 TYEYTITVRNNKDEPVTVTVEDQIPVSEDEDIKVELLEPPEPNEDEKDGILEWKVTLPPGESRTLEFSYEVE 314 (317)
T ss_pred EEEEEEEEECCCCCCEEEEEEeCCCCCCCceEEEEEcCCCCCcccCCCCEEEEEEEECCCCEEEEEEEEEEE
Confidence 3456779999998888877776655 2344444321 4788888888888877664
No 95
>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 3NCX_B 3NCW_D 4AQ1_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 2L04_A.
Probab=63.78 E-value=7.4 Score=32.65 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=34.8
Q ss_pred eEEEeCCeEEEeCCcEEEEEEEEEEecCCCCeEEEEEEEEeCCccEEEE
Q 003446 761 TVSLYPPWFTIAPQGTQDLAIQFNVTQAIGDFSFGEIVLTGSLNHIVRI 809 (819)
Q Consensus 761 ~v~~~p~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~~~~~~l~~ 809 (819)
+|+++|..+++..|++..|.+.+.+..... ..+.|+.++....+|
T Consensus 4 ~I~i~~~~~~l~~G~~~~l~~~~~~~~~~~----~~v~w~ssn~~iatV 48 (79)
T PF02368_consen 4 SITITPTSVTLKVGQTQQLTATVTPSDGSN----SKVTWSSSNPSIATV 48 (79)
T ss_dssp SEEETTTEEECETTCEETTEEEEEEEESTT----SCEEEEESSTTTEEE
T ss_pred EEEEECCEEEEECCCEEEEEEEEEECCCcE----eEEEEEeCCCeEEEE
Confidence 478899999999999999999999887654 456777765544443
No 96
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=61.49 E-value=23 Score=43.62 Aligned_cols=53 Identities=13% Similarity=0.290 Sum_probs=35.9
Q ss_pred eEEEEEEEEEecCCceeEEEEE--eCCCCceEEEeC-------CeEEEeCCcEEEEEEEEEEec
Q 003446 733 SLILQRSLKNVGNKTETYLTSV--VHPNGTTVSLYP-------PWFTIAPQGTQDLAIQFNVTQ 787 (819)
Q Consensus 733 ~~~~~~tv~N~g~~~~ty~~~~--~~~~g~~v~~~p-------~~~tv~~g~~~~~~v~~~~~~ 787 (819)
..+++++|||+|+.+..-.+.+ ..|.+ .+. .| .++.|+|||+++|+|++...+
T Consensus 668 ~i~v~v~V~NtG~~~G~EVvQlYv~~~~~-~~~-~P~k~L~gF~Kv~L~pGes~~V~~~l~~~~ 729 (765)
T PRK15098 668 KVTASVTVTNTGKREGATVVQLYLQDVTA-SMS-RPVKELKGFEKIMLKPGETQTVSFPIDIEA 729 (765)
T ss_pred eEEEEEEEEECCCCCccEEEEEeccCCCC-CCC-CHHHhccCceeEeECCCCeEEEEEeecHHH
Confidence 4578889999998765544443 23322 111 12 367899999999999998654
No 97
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=59.18 E-value=42 Score=29.85 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=36.9
Q ss_pred cceEEEEEEEEEecCCc-eeEEEE-----EeCCCCce---EEEeCCeEEEeCCcEEEEEEEEEEecC
Q 003446 731 AKSLILQRSLKNVGNKT-ETYLTS-----VVHPNGTT---VSLYPPWFTIAPQGTQDLAIQFNVTQA 788 (819)
Q Consensus 731 ~~~~~~~~tv~N~g~~~-~ty~~~-----~~~~~g~~---v~~~p~~~tv~~g~~~~~~v~~~~~~~ 788 (819)
....++..+++|..+.. .+-++. +.. .|+. +......++|+||++.++.+++.+...
T Consensus 14 G~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~y-tG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~y 79 (107)
T PF00927_consen 14 GQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEY-TGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQY 79 (107)
T ss_dssp TSEEEEEEEEEE-SSS-EECEEEEEEEEEEEC-TTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHSH
T ss_pred CCCEEEEEEEEeCCcCccccceeEEEEEEEEE-CCcccccEeEEEcceeeCCCCEEEEEEEEEceeE
Confidence 45567888999999877 553322 222 3553 455567799999999999999988763
No 98
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=58.21 E-value=2.1e+02 Score=31.39 Aligned_cols=87 Identities=14% Similarity=0.153 Sum_probs=46.0
Q ss_pred ceEEEEEEEEEecCCceeEE------EEEeCC----------CC----ceEEEeCCeEEEeCCcEEEEEEEEEEec----
Q 003446 732 KSLILQRSLKNVGNKTETYL------TSVVHP----------NG----TTVSLYPPWFTIAPQGTQDLAIQFNVTQ---- 787 (819)
Q Consensus 732 ~~~~~~~tv~N~g~~~~ty~------~~~~~~----------~g----~~v~~~p~~~tv~~g~~~~~~v~~~~~~---- 787 (819)
.+-+++.+|||.|+++.... +....| +. --++++|+ =.++|||+++++|+++-..
T Consensus 263 R~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~-~pI~PGETrtl~V~a~dA~Weve 341 (381)
T PF04744_consen 263 RTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN-SPIAPGETRTLTVEAQDAAWEVE 341 (381)
T ss_dssp SEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES---S-B-TT-EEEEEEEEE-HHHHHT
T ss_pred cEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC-CCcCCCceEEEEEEeehhHHHHh
Confidence 45578889999999775431 111111 10 01344433 2458999999999886421
Q ss_pred -------CCCCeEEEEEEEEeCCccEEEEeEEEEeeecC
Q 003446 788 -------AIGDFSFGEIVLTGSLNHIVRIPLSVKPVSIF 819 (819)
Q Consensus 788 -------~~~~~~~G~i~~~~~~~~~l~~P~~~~~~~~~ 819 (819)
..+.-+-|-|.|.+..++..-+.+.....+.|
T Consensus 342 RL~~l~~D~dsrfgGLLff~d~~G~r~i~~I~gpvIP~F 380 (381)
T PF04744_consen 342 RLSDLIYDPDSRFGGLLFFFDASGNRYISEIAGPVIPKF 380 (381)
T ss_dssp TGGGGGGSSS-EEEEEEEEEETTS-EEEEEEEEE-EEE-
T ss_pred hhhhhhcCcccceeEEEEEEcCCCCEEEEeccCcccccc
Confidence 01334557777887778777777776666554
No 99
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=57.87 E-value=22 Score=31.25 Aligned_cols=50 Identities=10% Similarity=0.133 Sum_probs=31.1
Q ss_pred eEEEEEEEEEecCCceeEEEEE---eC----------CCCceEEE-eCCeEEEeCCcEEEEEEE
Q 003446 733 SLILQRSLKNVGNKTETYLTSV---VH----------PNGTTVSL-YPPWFTIAPQGTQDLAIQ 782 (819)
Q Consensus 733 ~~~~~~tv~N~g~~~~ty~~~~---~~----------~~g~~v~~-~p~~~tv~~g~~~~~~v~ 782 (819)
..+++++|+|.|+.+.---... +. .-|..+.+ +-..+.|.||++++|++.
T Consensus 19 r~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 19 RKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred CcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 3456779999999775321110 11 12444444 134788899999998875
No 100
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=55.80 E-value=29 Score=30.54 Aligned_cols=50 Identities=10% Similarity=0.141 Sum_probs=31.2
Q ss_pred eEEEEEEEEEecCCceeEEEEE---eC----------CCCceEEE-eCCeEEEeCCcEEEEEEE
Q 003446 733 SLILQRSLKNVGNKTETYLTSV---VH----------PNGTTVSL-YPPWFTIAPQGTQDLAIQ 782 (819)
Q Consensus 733 ~~~~~~tv~N~g~~~~ty~~~~---~~----------~~g~~v~~-~p~~~tv~~g~~~~~~v~ 782 (819)
..+++++|+|.|+.+.---... +. .-|..+.+ +-..+.|+||++++|++.
T Consensus 19 r~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T cd00407 19 REAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV 82 (101)
T ss_pred CCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE
Confidence 4466779999999775321110 11 12444444 134788899999998875
No 101
>PRK13203 ureB urease subunit beta; Reviewed
Probab=55.53 E-value=28 Score=30.68 Aligned_cols=51 Identities=10% Similarity=0.147 Sum_probs=31.5
Q ss_pred ceEEEEEEEEEecCCceeEEEEE---eC----------CCCceEEE-eCCeEEEeCCcEEEEEEE
Q 003446 732 KSLILQRSLKNVGNKTETYLTSV---VH----------PNGTTVSL-YPPWFTIAPQGTQDLAIQ 782 (819)
Q Consensus 732 ~~~~~~~tv~N~g~~~~ty~~~~---~~----------~~g~~v~~-~p~~~tv~~g~~~~~~v~ 782 (819)
+..+++++|+|+|+.+..--... +. .-|..+.+ +-..+.|+||++++|++.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (102)
T PRK13203 18 GRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV 82 (102)
T ss_pred CCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 34567779999999775421110 11 12444444 134788899999998875
No 102
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=55.21 E-value=13 Score=35.15 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=39.6
Q ss_pred ccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCC
Q 003446 421 IEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHY 478 (819)
Q Consensus 421 ~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 478 (819)
..+|+... +.-...|.|.+++| |+|+|..|..+++++||.++|+..+...
T Consensus 74 p~aC~elr--N~~f~~d~vaL~eR------GeCSFl~Ktl~~e~aGa~aiiitd~~~~ 123 (193)
T KOG3920|consen 74 PHACEELR--NEIFAPDSVALMER------GECSFLVKTLNGEKAGATAIIITDSQNY 123 (193)
T ss_pred hhHHHHHh--hcccCCCcEEEEec------CCceeeehhhhhhhcCceEEEEecCCCC
Confidence 45676322 23456789999998 7999999999999999999999987653
No 103
>PRK13202 ureB urease subunit beta; Reviewed
Probab=52.18 E-value=38 Score=29.91 Aligned_cols=49 Identities=14% Similarity=0.140 Sum_probs=30.6
Q ss_pred EEEEEEEEEecCCceeE----EEEEe---------CCCCceEEE-eCCeEEEeCCcEEEEEEE
Q 003446 734 LILQRSLKNVGNKTETY----LTSVV---------HPNGTTVSL-YPPWFTIAPQGTQDLAIQ 782 (819)
Q Consensus 734 ~~~~~tv~N~g~~~~ty----~~~~~---------~~~g~~v~~-~p~~~tv~~g~~~~~~v~ 782 (819)
.+++++|+|.|+.+.-- .+--. ..-|..+.+ +-..+.|+||++++|++.
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 46778999999977532 11111 112334444 134788899999998875
No 104
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=51.36 E-value=23 Score=30.98 Aligned_cols=51 Identities=10% Similarity=0.116 Sum_probs=26.8
Q ss_pred ceEEEEEEEEEecCCceeEEEEE---eCC----------CCceEEEe-CCeEEEeCCcEEEEEEE
Q 003446 732 KSLILQRSLKNVGNKTETYLTSV---VHP----------NGTTVSLY-PPWFTIAPQGTQDLAIQ 782 (819)
Q Consensus 732 ~~~~~~~tv~N~g~~~~ty~~~~---~~~----------~g~~v~~~-p~~~tv~~g~~~~~~v~ 782 (819)
+..+++++|+|.|+.+..--... ++. -|..+.+- -..+.|.||++++|++.
T Consensus 17 gr~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV 81 (100)
T PF00699_consen 17 GRERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELV 81 (100)
T ss_dssp TSEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEE
T ss_pred CCcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEE
Confidence 44567789999999775321100 111 24445541 24688899999998875
No 105
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=49.40 E-value=1.4e+02 Score=26.01 Aligned_cols=52 Identities=21% Similarity=0.068 Sum_probs=32.5
Q ss_pred cceEEEEEEEEEecCCc--eeEEEEEeCCCCceEEEe---CCeEEEeCCcEEEEEEE
Q 003446 731 AKSLILQRSLKNVGNKT--ETYLTSVVHPNGTTVSLY---PPWFTIAPQGTQDLAIQ 782 (819)
Q Consensus 731 ~~~~~~~~tv~N~g~~~--~ty~~~~~~~~g~~v~~~---p~~~tv~~g~~~~~~v~ 782 (819)
.+..+.+.+++|..+.+ ..|++..-...|+++.-. ..+++|+++++.+|.-.
T Consensus 23 ~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~~~l~~~~~~~l~~~ 79 (94)
T PF07233_consen 23 NGLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPEQSPWQSLTLPGGQTVTLSAV 79 (94)
T ss_dssp CCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--TT---EEEEE-TT-EEEEEEE
T ss_pred CCeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCCCCCCEEEEEcCCCEEEEEEE
Confidence 45567788999999776 568888888899876533 13799999997766544
No 106
>PRK13201 ureB urease subunit beta; Reviewed
Probab=46.78 E-value=34 Score=31.59 Aligned_cols=50 Identities=8% Similarity=0.086 Sum_probs=30.9
Q ss_pred eEEEEEEEEEecCCceeE----EEEEe---------CCCCceEEEe-CCeEEEeCCcEEEEEEE
Q 003446 733 SLILQRSLKNVGNKTETY----LTSVV---------HPNGTTVSLY-PPWFTIAPQGTQDLAIQ 782 (819)
Q Consensus 733 ~~~~~~tv~N~g~~~~ty----~~~~~---------~~~g~~v~~~-p~~~tv~~g~~~~~~v~ 782 (819)
..+++++|+|+|+.+..- .+--. ..-|..+.+- -..+.|.||++++|++.
T Consensus 19 r~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 82 (136)
T PRK13201 19 HPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLV 82 (136)
T ss_pred CCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 445777999999977542 11100 1124444441 34688899999998875
No 107
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=46.45 E-value=1.1e+02 Score=27.57 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=32.6
Q ss_pred EEEEEEEEEecCCceeEE---EEEeCCCCceEEEe---------CCeEEEeCCcEEEEEEEEEEecCCCC
Q 003446 734 LILQRSLKNVGNKTETYL---TSVVHPNGTTVSLY---------PPWFTIAPQGTQDLAIQFNVTQAIGD 791 (819)
Q Consensus 734 ~~~~~tv~N~g~~~~ty~---~~~~~~~g~~v~~~---------p~~~tv~~g~~~~~~v~~~~~~~~~~ 791 (819)
..+.++|+|.|+++..+. +.+....|-..... ...-+|+||++.+..+.|.+|.....
T Consensus 38 v~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~vp~~~~~ 107 (123)
T PF11611_consen 38 VVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEVPKDDKP 107 (123)
T ss_dssp EEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEESTT-GG
T ss_pred EEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEECCCCcc
Confidence 467789999998776643 22322333222211 13578999999999999999987543
No 108
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=46.42 E-value=2.8e+02 Score=28.57 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=41.5
Q ss_pred eEEEEEEEEEecCCceeEEEEE--eCC---CCceEEEeCCeEEEeCCcEEEEEEEEEEecCCCCeEEEEEEEEe
Q 003446 733 SLILQRSLKNVGNKTETYLTSV--VHP---NGTTVSLYPPWFTIAPQGTQDLAIQFNVTQAIGDFSFGEIVLTG 801 (819)
Q Consensus 733 ~~~~~~tv~N~g~~~~ty~~~~--~~~---~g~~v~~~p~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~ 801 (819)
....+++|+|.++. .|-+.. +.. ....+-++|.-+.++||+++.+.|...-+-..+...-=||.+.+
T Consensus 39 ~~~~si~v~N~~~~--p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~~lp~drEs~f~l~v~~ 110 (230)
T PRK09918 39 DGEGSINVKNTDSN--PILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKSGSPLNTEHLLRVSFEG 110 (230)
T ss_pred CCeEEEEEEcCCCC--cEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECCCCCCCeeEEEEEEEEE
Confidence 34456689998864 344432 211 11357789999999999999999876532222333334566654
No 109
>PRK13205 ureB urease subunit beta; Reviewed
Probab=44.95 E-value=45 Score=31.47 Aligned_cols=51 Identities=10% Similarity=0.112 Sum_probs=31.6
Q ss_pred ceEEEEEEEEEecCCceeE----EEEEe---------CCCCceEEE-eCCeEEEeCCcEEEEEEE
Q 003446 732 KSLILQRSLKNVGNKTETY----LTSVV---------HPNGTTVSL-YPPWFTIAPQGTQDLAIQ 782 (819)
Q Consensus 732 ~~~~~~~tv~N~g~~~~ty----~~~~~---------~~~g~~v~~-~p~~~tv~~g~~~~~~v~ 782 (819)
+..+++++|+|+|+.+.-- .+--. ..-|..+.+ +-..+.|.||++++|++.
T Consensus 18 GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV 82 (162)
T PRK13205 18 GREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLV 82 (162)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 3456778999999977532 21111 112444444 134688899999998875
No 110
>PRK13204 ureB urease subunit beta; Reviewed
Probab=42.32 E-value=42 Score=31.78 Aligned_cols=51 Identities=10% Similarity=0.132 Sum_probs=31.6
Q ss_pred ceEEEEEEEEEecCCceeE----EEEEe---------CCCCceEEE-eCCeEEEeCCcEEEEEEE
Q 003446 732 KSLILQRSLKNVGNKTETY----LTSVV---------HPNGTTVSL-YPPWFTIAPQGTQDLAIQ 782 (819)
Q Consensus 732 ~~~~~~~tv~N~g~~~~ty----~~~~~---------~~~g~~v~~-~p~~~tv~~g~~~~~~v~ 782 (819)
+..+++++|+|.|+.+.-- .+--. ..-|..+.+ +-..+.|.||++++|++.
T Consensus 41 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 105 (159)
T PRK13204 41 GRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLV 105 (159)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 3456778999999977532 11111 112444444 134788899999998875
No 111
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=41.14 E-value=1.2e+02 Score=35.63 Aligned_cols=54 Identities=26% Similarity=0.408 Sum_probs=36.8
Q ss_pred EEEEEEEEEecCCceeEEEEEeCC----CCceEEEe-CC----------------eEEEeCCcEEEEEEEEEEec
Q 003446 734 LILQRSLKNVGNKTETYLTSVVHP----NGTTVSLY-PP----------------WFTIAPQGTQDLAIQFNVTQ 787 (819)
Q Consensus 734 ~~~~~tv~N~g~~~~ty~~~~~~~----~g~~v~~~-p~----------------~~tv~~g~~~~~~v~~~~~~ 787 (819)
..++++|+|..+.+.+-++..+.| ..++|++. |. .|+|+||++++|.+.+++.-
T Consensus 444 ~~~~i~v~N~~~~~v~v~v~d~~PvS~d~~i~V~~~~~~~~~~~~~~~~~G~~~W~l~L~pg~~~~l~~~y~v~~ 518 (525)
T TIGR02231 444 YAYRITLKNLRKEPERVQIEEQLPVSENEDIKVKLLSPTTPGYDEEDKKDGILEWKLTLKPGEKRDLKFKFKVEH 518 (525)
T ss_pred EEEEEEEEcCCCCceEEEEEeeccCCCCCeeEEEEecCCCccccccccCCCeEEEEEEECCCCeEEEEEEEEEec
Confidence 456678999998888777776655 23444432 11 37888888888887777654
No 112
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=40.57 E-value=12 Score=17.16 Aligned_cols=6 Identities=50% Similarity=0.806 Sum_probs=4.3
Q ss_pred cccccC
Q 003446 546 RFSSRG 551 (819)
Q Consensus 546 ~FSS~G 551 (819)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 113
>PRK13198 ureB urease subunit beta; Reviewed
Probab=39.88 E-value=48 Score=31.34 Aligned_cols=51 Identities=10% Similarity=0.195 Sum_probs=31.7
Q ss_pred ceEEEEEEEEEecCCceeE----EEEEe---------CCCCceEEEe-CCeEEEeCCcEEEEEEE
Q 003446 732 KSLILQRSLKNVGNKTETY----LTSVV---------HPNGTTVSLY-PPWFTIAPQGTQDLAIQ 782 (819)
Q Consensus 732 ~~~~~~~tv~N~g~~~~ty----~~~~~---------~~~g~~v~~~-p~~~tv~~g~~~~~~v~ 782 (819)
+..+++++|+|.|+.+.-- .+--. ..-|..+.+- -..+.|.||++++|++.
T Consensus 46 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 110 (158)
T PRK13198 46 NKPVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLI 110 (158)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEE
Confidence 3456778999999977532 11100 1124444441 34688899999998876
No 114
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=33.72 E-value=79 Score=34.51 Aligned_cols=82 Identities=12% Similarity=0.134 Sum_probs=44.2
Q ss_pred eEEEEEEEEEecCCcee---EE-EEEe--C-----------CC-----CceEEEeCCeEEEeCCcEEEEEEEEEEecC--
Q 003446 733 SLILQRSLKNVGNKTET---YL-TSVV--H-----------PN-----GTTVSLYPPWFTIAPQGTQDLAIQFNVTQA-- 788 (819)
Q Consensus 733 ~~~~~~tv~N~g~~~~t---y~-~~~~--~-----------~~-----g~~v~~~p~~~tv~~g~~~~~~v~~~~~~~-- 788 (819)
.-+++.+|||.|+++.. |+ +.+. . |+ |+ ++++ .-.+.|||+++++|+++-..=
T Consensus 283 ~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL--~v~d-~~pI~PGETr~v~v~aqdA~WEv 359 (399)
T TIGR03079 283 ALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGL--EVDD-QSAIAPGETVEVKMEAKDALWEV 359 (399)
T ss_pred EEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccc--eeCC-CCCcCCCcceEEEEEEehhhhHH
Confidence 45677889999987643 22 2221 1 11 32 3322 234689999999988764320
Q ss_pred ---------CCCeEEEEEEEEeCCccEEEEeEEEEeee
Q 003446 789 ---------IGDFSFGEIVLTGSLNHIVRIPLSVKPVS 817 (819)
Q Consensus 789 ---------~~~~~~G~i~~~~~~~~~l~~P~~~~~~~ 817 (819)
.+.-..|-|.|....+...-..+.....+
T Consensus 360 eRL~~L~~DpdSrfgGLLff~d~~G~R~~~~I~gpvIP 397 (399)
T TIGR03079 360 QRLMALLGDPESRFGGLLMFWDPEGNRIINSIAGPVIP 397 (399)
T ss_pred HHHHHHhcCcccccceEEEEEcCCCCEEehhccCcccc
Confidence 12223355555555566555555443333
No 115
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=33.52 E-value=86 Score=27.49 Aligned_cols=49 Identities=10% Similarity=0.189 Sum_probs=29.2
Q ss_pred EEEEEEEEEecCCcee----EEEEEe---------CCCCceEEEe-CCeEEEeCCcEEEEEEE
Q 003446 734 LILQRSLKNVGNKTET----YLTSVV---------HPNGTTVSLY-PPWFTIAPQGTQDLAIQ 782 (819)
Q Consensus 734 ~~~~~tv~N~g~~~~t----y~~~~~---------~~~g~~v~~~-p~~~tv~~g~~~~~~v~ 782 (819)
.+.+.+|.|+|+.+.. |.+--. ..-|..+.+. -.-+.|.||++++|++.
T Consensus 20 ~~~~i~V~NtGDRPIQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRFEPG~~k~V~LV 82 (106)
T COG0832 20 PTVTIEVANTGDRPIQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRFEPGDEKEVELV 82 (106)
T ss_pred cceEEEEeecCCCceEeecceeehhhCcceeechhhhcceEecccCCceEeeCCCCccEEEEE
Confidence 3455689999997743 222110 1124444442 24588899999998875
No 116
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=32.19 E-value=1.5e+02 Score=26.06 Aligned_cols=51 Identities=24% Similarity=0.091 Sum_probs=37.7
Q ss_pred ceEEEEEEEEEecCC--ceeEEEEEeCCCCceEEEe---CCeEEEeCCcEEEEEEE
Q 003446 732 KSLILQRSLKNVGNK--TETYLTSVVHPNGTTVSLY---PPWFTIAPQGTQDLAIQ 782 (819)
Q Consensus 732 ~~~~~~~tv~N~g~~--~~ty~~~~~~~~g~~v~~~---p~~~tv~~g~~~~~~v~ 782 (819)
+..+.+.+|+|..+. ...|++..-...|+++.-. ...++|+++++.++.-.
T Consensus 32 g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~l~l~~~~~~~l~~~ 87 (101)
T cd09030 32 GLLEAQATLSNTSSKPLTLQYRFYWYDAQGLEVEPEQEPWQSLTLPGGQTVTLQAV 87 (101)
T ss_pred CeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCCCCCCEEEEECCCCeEEEEEE
Confidence 445677899999854 4668888888889877643 34799999887766544
No 117
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=32.04 E-value=3.1e+02 Score=27.16 Aligned_cols=55 Identities=13% Similarity=0.158 Sum_probs=35.3
Q ss_pred ceEEEEEEEEEecCCceeEEEEEeC---C-CCceEEEeCCe---EEEeCCcEEEEEEEEEEec
Q 003446 732 KSLILQRSLKNVGNKTETYLTSVVH---P-NGTTVSLYPPW---FTIAPQGTQDLAIQFNVTQ 787 (819)
Q Consensus 732 ~~~~~~~tv~N~g~~~~ty~~~~~~---~-~g~~v~~~p~~---~tv~~g~~~~~~v~~~~~~ 787 (819)
...+++.+|.|.|+.+ -|.++... | +..++.=-..+ =+++||++.+..+++.+..
T Consensus 38 ~~v~V~~~iyN~G~~~-A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~ 99 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSSA-AYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKK 99 (181)
T ss_pred cEEEEEEEEEECCCCe-EEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeee
Confidence 4567888999999854 46666654 2 33332100011 2568999999999998754
No 118
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=30.97 E-value=3.4e+02 Score=23.22 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=31.0
Q ss_pred CcEEEecccceEEEEEEEEEecCCceeEEEEEe-----CCCCceEEEeCCeEEEeCCcEEEEEEEEEE
Q 003446 723 PSVTVSAVAKSLILQRSLKNVGNKTETYLTSVV-----HPNGTTVSLYPPWFTIAPQGTQDLAIQFNV 785 (819)
Q Consensus 723 ps~~~~~~~~~~~~~~tv~N~g~~~~ty~~~~~-----~~~g~~v~~~p~~~tv~~g~~~~~~v~~~~ 785 (819)
+++++.+-.+ +++++|.-.|......++.+. +..|........+|++++|+ .+-+|++.+
T Consensus 9 ~~~~V~E~~g--~~~v~V~R~g~~~~~~~V~~~t~~gtA~~g~Dy~~~~g~l~F~~ge-~~k~i~i~i 73 (90)
T smart00237 9 PVYTVSESDG--EVEVCVVRTGGARGTVVVPYRTEDGTATAGSDYEPVEGTLTFPPGE-TEKCIRIKI 73 (90)
T ss_pred CeEEEEECCe--EEEEEEEecCCCCcEEEEEEEEcCCcCCCCCCccccceEEEECCCC-EEEEEEEEE
Confidence 3445544333 344455544554444444443 23444444446789999996 333444443
No 119
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=30.61 E-value=50 Score=23.93 Aligned_cols=23 Identities=9% Similarity=0.252 Sum_probs=18.3
Q ss_pred HHHHHhCCCCCHHHHHHHHHhcc
Q 003446 613 ALIKQHNPSWTPTMIASAISSTA 635 (819)
Q Consensus 613 ALl~q~~P~~sp~~ik~~L~~TA 635 (819)
--|++.+|+|++..|+..|...-
T Consensus 6 ~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 6 QQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHCCCCCHHHHHHHHHHcC
Confidence 45788999999999999997543
No 120
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=30.51 E-value=2.8e+02 Score=24.90 Aligned_cols=73 Identities=11% Similarity=0.062 Sum_probs=45.4
Q ss_pred ccccc-CCCeEEEEEeecCCCCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCC-CccccccHHHHHHHHHHhCCcEEEE
Q 003446 262 ASGMA-PCARIAVYKAMYPTVGTLADVIAAIDQATMDGVDILTLSIGPDEPPR-DTITMLGIFDVLMLFARRAGVFVVQ 338 (819)
Q Consensus 262 ~~GvA-P~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~-~~~~~~~~~~~a~~~a~~~Gi~vV~ 338 (819)
+.... ++++|+.+ +.+.|+....++.-+++..+.|+|+|-+|-......+ +.=...+.+...++... |+-||.
T Consensus 30 F~~y~~~~~elvgf--~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~--gi~VV~ 104 (107)
T PF08821_consen 30 FARYDDEDVELVGF--FTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKF--GIEVVE 104 (107)
T ss_pred cccCCCCCeEEEEE--eeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHh--CCCEee
Confidence 34444 46788765 4555677788899999999999999999876543221 01112234444333332 888774
No 121
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=30.17 E-value=2.3e+02 Score=36.93 Aligned_cols=85 Identities=15% Similarity=0.249 Sum_probs=48.4
Q ss_pred cceEEEEEEEEEecCCceeEE-EEEeC----C-------CCc----------------eEEEeCCeEEEeCCcEEEEEEE
Q 003446 731 AKSLILQRSLKNVGNKTETYL-TSVVH----P-------NGT----------------TVSLYPPWFTIAPQGTQDLAIQ 782 (819)
Q Consensus 731 ~~~~~~~~tv~N~g~~~~ty~-~~~~~----~-------~g~----------------~v~~~p~~~tv~~g~~~~~~v~ 782 (819)
++.+++++|++|.|..+..|- ++... + ..+ .+++.... .++||++.+|+|.
T Consensus 798 GE~~~~~ItL~N~S~~pvd~l~~sf~DS~~~~~~~~l~~k~l~~~e~yelE~~l~~~~~~~i~~~~-~I~Pg~~~~~~~~ 876 (1185)
T PF08626_consen 798 GEKQTFTITLRNTSSVPVDFLSFSFQDSTIEPLQKALSNKDLSPDELYELEWQLFKLPAFRILNKP-PIPPGESATFTVE 876 (1185)
T ss_pred CcEEEEEEEEEECCccccceEEEEEEeccHHHHhhhhhcccCChhhhhhhhhhhhcCcceeecccC-ccCCCCEEEEEEE
Confidence 356789999999998776652 33220 0 000 01111111 8899999999999
Q ss_pred EEEecCCCCeEEEEEEEEeC------C---ccEEEEeEEEEee
Q 003446 783 FNVTQAIGDFSFGEIVLTGS------L---NHIVRIPLSVKPV 816 (819)
Q Consensus 783 ~~~~~~~~~~~~G~i~~~~~------~---~~~l~~P~~~~~~ 816 (819)
+....+.-......|.+.-. . ...|++|+.+-+.
T Consensus 877 ~~~~~~~~~~~~~~i~l~y~~~~~~~~~~y~Rql~ipl~vtV~ 919 (1185)
T PF08626_consen 877 VDGKPGPIQLTYADIQLEYGYSGEDSSTFYTRQLSIPLTVTVN 919 (1185)
T ss_pred ecCcccccceeeeeEEEEecccCCCCCCCeeEEEEEEEEEEEe
Confidence 86554422233333433311 1 2468999887654
No 122
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=29.16 E-value=3.8e+02 Score=33.54 Aligned_cols=51 Identities=14% Similarity=0.146 Sum_probs=29.7
Q ss_pred EEEEEEEEec-CCceeEEEEEe-----CCCCceEEEeCCeEEEeCCcE-EEEEEEEEE
Q 003446 735 ILQRSLKNVG-NKTETYLTSVV-----HPNGTTVSLYPPWFTIAPQGT-QDLAIQFNV 785 (819)
Q Consensus 735 ~~~~tv~N~g-~~~~ty~~~~~-----~~~g~~v~~~p~~~tv~~g~~-~~~~v~~~~ 785 (819)
+++++|+=.| +...+.++... +..|........+++++|||+ ++++|.+.-
T Consensus 417 tV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~~~sGTLtF~PGEt~KtItV~IID 474 (928)
T TIGR00845 417 TVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEFTEGTLVFKPGETQKEFRIGIID 474 (928)
T ss_pred EEEEEEEEccCCCCceEEEEEEccCCccCCCCCccccCceEEECCCceEEEEEEEEcc
Confidence 4555665444 43444444443 334556666678999999976 455555543
No 123
>PRK15019 CsdA-binding activator; Provisional
Probab=28.96 E-value=54 Score=31.33 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=26.3
Q ss_pred cccccchhhHHHHHHHHHHHhCCCCCHHHHHH
Q 003446 598 LSGTSMATPHIAGIAALIKQHNPSWTPTMIAS 629 (819)
Q Consensus 598 ~sGTSMAaP~VAG~aALl~q~~P~~sp~~ik~ 629 (819)
+.|.| =|++|-|.+|||.+.+-+.+|++|.+
T Consensus 79 f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 79 FFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 33445 48999999999999999999999875
No 124
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.92 E-value=1.2e+02 Score=36.23 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=41.5
Q ss_pred CCCCceEEEeCCeEEEeCCcEEEEEEEEEEecCCCCeEEEEEEEEeC
Q 003446 756 HPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQAIGDFSFGEIVLTGS 802 (819)
Q Consensus 756 ~~~g~~v~~~p~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~~ 802 (819)
.-.+.++...|..+++.|+.-.++++||.+.+...++.||.|++.++
T Consensus 759 TlgdLKlve~p~p~~Laph~f~~ikatvKVsStenGvIfGnIvY~~~ 805 (948)
T KOG1058|consen 759 TLGDLKLVERPTPFSLAPHDFVNIKATVKVSSTENGVIFGNIVYDTS 805 (948)
T ss_pred eccCceeeecCCCcccCcccceeEEEEEEEeeccCcEEEEEEEecCc
Confidence 34567888889999999999999999999999888999999999874
No 125
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=28.80 E-value=1.5e+02 Score=27.37 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=29.3
Q ss_pred eEEEEEEEEEecCCceeE---EEEEeCCCCceEEEeC---CeE--EEeCCcEEEEEEEEEEecCCCCeEEEEEEEEeCCc
Q 003446 733 SLILQRSLKNVGNKTETY---LTSVVHPNGTTVSLYP---PWF--TIAPQGTQDLAIQFNVTQAIGDFSFGEIVLTGSLN 804 (819)
Q Consensus 733 ~~~~~~tv~N~g~~~~ty---~~~~~~~~g~~v~~~p---~~~--tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~~~~ 804 (819)
+++|.++|-|.++++... =+....+.|-++.+.. +-. +++||++ ..|.++|.+++.
T Consensus 48 tktF~V~vaN~s~~~idLsk~Cf~a~~~~gk~f~ldTVd~~L~~g~lK~g~s----------------~kG~avFaS~d~ 111 (124)
T PF14263_consen 48 TKTFDVTVANLSDKDIDLSKMCFKAYSPDGKEFKLDTVDEELTSGTLKPGES----------------VKGIAVFASDDD 111 (124)
T ss_dssp EEEEEEEEEE-SSS-EE-TT-EEEEEETTS-EEEEEEE-GGGG-SEE-TT-E----------------EEEEEEEEESSS
T ss_pred EEEEEEEEecCCCCccccccchhhhccccCCEEEecccchhhhhccccCCCc----------------eeEEEEEeeCCh
Confidence 467778888888755431 1222234443333211 111 3455554 458888887665
Q ss_pred cEEEEeE
Q 003446 805 HIVRIPL 811 (819)
Q Consensus 805 ~~l~~P~ 811 (819)
.....|+
T Consensus 112 sVy~a~~ 118 (124)
T PF14263_consen 112 SVYQASL 118 (124)
T ss_dssp GGGGEEE
T ss_pred hhhccce
Confidence 5444444
No 126
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=28.24 E-value=79 Score=31.53 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=31.6
Q ss_pred ceEEEEEEEEEecCCcee----EEEEEeC---------CCCceEEE-eCCeEEEeCCcEEEEEEE
Q 003446 732 KSLILQRSLKNVGNKTET----YLTSVVH---------PNGTTVSL-YPPWFTIAPQGTQDLAIQ 782 (819)
Q Consensus 732 ~~~~~~~tv~N~g~~~~t----y~~~~~~---------~~g~~v~~-~p~~~tv~~g~~~~~~v~ 782 (819)
+..+++++|+|.|+.+.- |.+--.. .-|..+.+ +-..+.|.||++++|++.
T Consensus 127 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 191 (208)
T PRK13192 127 GRPAVTLDVTNTGDRPIQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLV 191 (208)
T ss_pred CCCEEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 345677899999997743 2211111 12444444 134788899999998875
No 127
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=27.87 E-value=2.4e+02 Score=23.18 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=25.2
Q ss_pred EEEEecCCceeEEEEEeCCCCceEEEeCCeEEEeCCcEEEEEEEEE
Q 003446 739 SLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFN 784 (819)
Q Consensus 739 tv~N~g~~~~ty~~~~~~~~g~~v~~~p~~~tv~~g~~~~~~v~~~ 784 (819)
.+.++. +.+|++.+..+.-.... ...|+|.+|++.+++|+++
T Consensus 41 ~~~~l~--~g~Y~l~v~~~g~~~~~--~~~v~v~~~~~~~~~i~L~ 82 (82)
T PF13620_consen 41 SFEGLP--PGTYTLRVSAPGYQPQT--QENVTVTAGQTTTVDITLE 82 (82)
T ss_dssp EEEEE---SEEEEEEEEBTTEE-EE--EEEEEESSSSEEE--EEEE
T ss_pred EEEccC--CEeEEEEEEECCcceEE--EEEEEEeCCCEEEEEEEEC
Confidence 445553 36788887766432222 2468999999999888774
No 128
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=27.08 E-value=75 Score=25.97 Aligned_cols=21 Identities=10% Similarity=0.279 Sum_probs=16.0
Q ss_pred CeEEEeCCcEEEEEEEEEEec
Q 003446 767 PWFTIAPQGTQDLAIQFNVTQ 787 (819)
Q Consensus 767 ~~~tv~~g~~~~~~v~~~~~~ 787 (819)
.++.|+||++++++++++..+
T Consensus 25 ~rv~l~pGes~~v~~~l~~~~ 45 (71)
T PF14310_consen 25 ERVSLAPGESKTVSFTLPPED 45 (71)
T ss_dssp EEEEE-TT-EEEEEEEEEHHH
T ss_pred EEEEECCCCEEEEEEEECHHH
Confidence 467899999999999998754
No 129
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=26.99 E-value=62 Score=30.58 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=27.2
Q ss_pred ecccccchhhHHHHHHHHHHHhCCCCCHHHHHHH
Q 003446 597 LLSGTSMATPHIAGIAALIKQHNPSWTPTMIASA 630 (819)
Q Consensus 597 ~~sGTSMAaP~VAG~aALl~q~~P~~sp~~ik~~ 630 (819)
.+.|.| =|+.|-|++|||.+.+-+.+|++|.+.
T Consensus 73 ~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 73 HFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 344555 489999999999999999999998743
No 130
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=25.93 E-value=2e+02 Score=22.13 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=22.5
Q ss_pred cceEEEEEEEEEecCCcee-EEEEEeCCCCceEEEeCCeEEE
Q 003446 731 AKSLILQRSLKNVGNKTET-YLTSVVHPNGTTVSLYPPWFTI 771 (819)
Q Consensus 731 ~~~~~~~~tv~N~g~~~~t-y~~~~~~~~g~~v~~~p~~~tv 771 (819)
....+++++++|.|..+.+ ..+.-..|.|. ++.+.++++
T Consensus 11 Gd~v~Yti~v~N~g~~~a~~v~v~D~lP~g~--~~v~~S~~~ 50 (53)
T TIGR01451 11 GDTITYTITVTNNGNVPATNVVVTDILPSGT--TFVSNSVTV 50 (53)
T ss_pred CCEEEEEEEEEECCCCceEeEEEEEcCCCCC--EEEeCcEEE
Confidence 4566788899999986654 22232345553 333455544
No 131
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=25.04 E-value=4.7e+02 Score=22.91 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=22.3
Q ss_pred ceEEEEEEEEEecCCc-eeEEEEEeCCCCceE
Q 003446 732 KSLILQRSLKNVGNKT-ETYLTSVVHPNGTTV 762 (819)
Q Consensus 732 ~~~~~~~tv~N~g~~~-~ty~~~~~~~~g~~v 762 (819)
+.....++|+|.++.+ ..|++++..|.+.+|
T Consensus 13 ~Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i 44 (101)
T PF00553_consen 13 GGFQGEVTVTNNGSSPINGWTVTFTFPSGQTI 44 (101)
T ss_dssp SEEEEEEEEEESSSSTEESEEEEEEESTTEEE
T ss_pred CCeEEEEEEEECCCCccCCEEEEEEeCCCCEE
Confidence 3445567999999877 469998887755544
No 132
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=24.82 E-value=71 Score=30.17 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=26.7
Q ss_pred ecccccchhhHHHHHHHHHHHhCCCCCHHHHHH
Q 003446 597 LLSGTSMATPHIAGIAALIKQHNPSWTPTMIAS 629 (819)
Q Consensus 597 ~~sGTSMAaP~VAG~aALl~q~~P~~sp~~ik~ 629 (819)
.+.|.| =|+.|-|.+|||.+.+-+.+|++|.+
T Consensus 68 ~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 68 ELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 333445 58999999999999999999999864
No 133
>PRK13986 urease subunit alpha; Provisional
Probab=24.56 E-value=1.2e+02 Score=30.58 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=31.6
Q ss_pred ceEEEEEEEEEecCCcee----EEEEEe---------CCCCceEEE-eCCeEEEeCCcEEEEEEE
Q 003446 732 KSLILQRSLKNVGNKTET----YLTSVV---------HPNGTTVSL-YPPWFTIAPQGTQDLAIQ 782 (819)
Q Consensus 732 ~~~~~~~tv~N~g~~~~t----y~~~~~---------~~~g~~v~~-~p~~~tv~~g~~~~~~v~ 782 (819)
+..+++++|+|.|+.+.- |.+--. ..-|..+.+ +-..+.|.||++++|++.
T Consensus 123 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 187 (225)
T PRK13986 123 GKKAVSVKVKNVGDRPVQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELI 187 (225)
T ss_pred CCcEEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 345677899999997743 211111 112444444 134788899999998875
No 134
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=23.32 E-value=68 Score=22.09 Aligned_cols=13 Identities=54% Similarity=0.782 Sum_probs=10.8
Q ss_pred chhhHHHHHHHHH
Q 003446 603 MATPHIAGIAALI 615 (819)
Q Consensus 603 MAaP~VAG~aALl 615 (819)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998755
No 135
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=22.71 E-value=76 Score=30.05 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=24.8
Q ss_pred cccccchhhHHHHHHHHHHHhCCCCCHHHHH
Q 003446 598 LSGTSMATPHIAGIAALIKQHNPSWTPTMIA 628 (819)
Q Consensus 598 ~sGTSMAaP~VAG~aALl~q~~P~~sp~~ik 628 (819)
+.|=|= |++|.|.+|++.+.+-..+|++|.
T Consensus 74 F~gdSd-A~ivrGL~aill~~~~G~t~~eI~ 103 (144)
T COG2166 74 FFGDSD-ARIVRGLLAILLAAYSGKTAAEIL 103 (144)
T ss_pred Eeccch-hHHHHHHHHHHHHHHcCCCHHHHH
Confidence 334443 699999999999999999999985
No 136
>PF03160 Calx-beta: Calx-beta domain; InterPro: IPR003644 The calx-beta motif is present as a tandem repeat in the cytoplasmic domains of Calx Na-Ca exchangers, which are used to expel calcium from cells. This motif overlaps domains used for calcium binding and regulation. The calx-beta motif is also present in the cytoplasmic tail of mammalian integrin-beta4, which mediates the bi-directional transfer of signals across the plasma membrane, as well as in some cyanobacterial proteins. This motif contains a series of beta-strands and turns that form a self-contained beta-sheet [, ].; GO: 0007154 cell communication, 0016021 integral to membrane; PDB: 3H6A_B 3FSO_A 3FQ4_B 2DPK_A 2QVM_A 3GIN_B 2QVK_A 2FWU_A 2FWS_A 3E9U_A ....
Probab=22.61 E-value=2.9e+02 Score=23.90 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=15.1
Q ss_pred CCceEEEeCCeEEEeCCcE-EEEEEEEEE
Q 003446 758 NGTTVSLYPPWFTIAPQGT-QDLAIQFNV 785 (819)
Q Consensus 758 ~g~~v~~~p~~~tv~~g~~-~~~~v~~~~ 785 (819)
.|......+.++++++|++ +.+.|++--
T Consensus 57 ~~~Dy~~~~~~v~f~~g~t~~~i~i~i~d 85 (100)
T PF03160_consen 57 AGSDYSPTSGTVTFPPGETSKTINITIID 85 (100)
T ss_dssp TTTSBE--EEEEEE-TT-SEEEEEEEB--
T ss_pred cccccccceeEEEECCCCeEEEEEEEEeC
Confidence 3555566667899999944 566666533
No 137
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=21.98 E-value=92 Score=28.85 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=25.8
Q ss_pred ecccccchhhHHHHHHHHHHHhCCCCCHHHHHHH
Q 003446 597 LLSGTSMATPHIAGIAALIKQHNPSWTPTMIASA 630 (819)
Q Consensus 597 ~~sGTSMAaP~VAG~aALl~q~~P~~sp~~ik~~ 630 (819)
.+.|.|= |+.|-|++|||.+.+-+.+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4445554 67999999999999999999998653
No 138
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=21.37 E-value=1.5e+02 Score=26.97 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=16.7
Q ss_pred eEEEeCCeEEEeCCcEEEEE
Q 003446 761 TVSLYPPWFTIAPQGTQDLA 780 (819)
Q Consensus 761 ~v~~~p~~~tv~~g~~~~~~ 780 (819)
...++|..|+|++|.+.++.
T Consensus 36 ~~~F~P~~ltV~~GdTVtw~ 55 (115)
T TIGR03102 36 GFAFDPPAIRVDPGTTVVWE 55 (115)
T ss_pred ceeEeCCEEEECCCCEEEEE
Confidence 56788999999999987765
No 139
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=21.22 E-value=1.4e+02 Score=26.38 Aligned_cols=48 Identities=8% Similarity=0.054 Sum_probs=0.0
Q ss_pred cccceEEEEEEEEEecCCceeEEEEEeCCCCceEEEeCCeEEEeCCcEEEEEEEEEEe
Q 003446 729 AVAKSLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVT 786 (819)
Q Consensus 729 ~~~~~~~~~~tv~N~g~~~~ty~~~~~~~~g~~v~~~p~~~tv~~g~~~~~~v~~~~~ 786 (819)
.++....++++++|.+....++.+.- .-....+++|++.+++++..-+
T Consensus 38 ~v~~G~~v~l~~~N~~~~~h~~~i~~----------~~~~~~l~~g~~~~~~f~~~~~ 85 (104)
T PF13473_consen 38 TVKAGQPVTLTFTNNDSRPHEFVIPD----------LGISKVLPPGETATVTFTPLKP 85 (104)
T ss_dssp EEETTCEEEEEEEE-SSS-EEEEEGG----------GTEEEEE-TT-EEEEEEEE-S-
T ss_pred EEcCCCeEEEEEEECCCCcEEEEECC----------CceEEEECCCCEEEEEEcCCCC
No 140
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=21.14 E-value=2.5e+02 Score=30.42 Aligned_cols=78 Identities=18% Similarity=0.169 Sum_probs=51.4
Q ss_pred ccCCCeEEEEEeecCCCCCHHHHHHHHHHHHhCC----CcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeC
Q 003446 265 MAPCARIAVYKAMYPTVGTLADVIAAIDQATMDG----VDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAA 340 (819)
Q Consensus 265 vAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g----~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AA 340 (819)
-.|.+++..|.+.-..-.....|+.||+.+.+.+ +|||=+-=||+.-.+=+.+-...+ +....+.-+.|+.+-
T Consensus 38 r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~v---arai~~~~~PvisaI 114 (319)
T PF02601_consen 38 RNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEV---ARAIAASPIPVISAI 114 (319)
T ss_pred hCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHH---HHHHHhCCCCEEEec
Confidence 3466777666554432267889999999998875 899999888764322111112223 334456789999999
Q ss_pred CCCCC
Q 003446 341 GNQGP 345 (819)
Q Consensus 341 GN~g~ 345 (819)
|-+-.
T Consensus 115 GHe~D 119 (319)
T PF02601_consen 115 GHETD 119 (319)
T ss_pred CCCCC
Confidence 98743
No 141
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=20.64 E-value=84 Score=24.49 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=20.8
Q ss_pred eecccccchhhHHHHHH------HHHHHhCCCCCHHHHHHHHH
Q 003446 596 ALLSGTSMATPHIAGIA------ALIKQHNPSWTPTMIASAIS 632 (819)
Q Consensus 596 ~~~sGTSMAaP~VAG~a------ALl~q~~P~~sp~~ik~~L~ 632 (819)
-.+.||=+..=.|.... .-+.+.||++++++|+++|.
T Consensus 12 P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 12 PVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp -EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred ceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 34556665544444332 12455699999999999874
Done!