Query 003449
Match_columns 819
No_of_seqs 788 out of 4111
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 23:37:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003449.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003449hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.7E-82 5.9E-87 729.8 75.5 653 134-818 52-707 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 2.5E-79 5.5E-84 705.2 74.0 639 131-802 84-724 (857)
3 PLN03218 maturation of RBCL 1; 100.0 3.8E-69 8.3E-74 604.6 71.8 546 205-769 367-915 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 7.8E-69 1.7E-73 602.1 71.1 545 172-735 369-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 5.3E-64 1.2E-68 563.9 55.4 472 134-626 88-560 (697)
6 PLN03081 pentatricopeptide (PP 100.0 7.3E-62 1.6E-66 546.6 53.3 513 206-770 85-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-37 4E-42 369.1 90.7 612 183-816 271-883 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-37 3.6E-42 369.5 87.2 627 145-797 273-899 (899)
9 PRK11447 cellulose synthase su 100.0 2.4E-28 5.3E-33 288.7 80.5 637 136-797 31-739 (1157)
10 PRK11447 cellulose synthase su 100.0 4.6E-27 1E-31 277.9 77.7 609 176-804 31-706 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 2.5E-24 5.4E-29 241.9 73.6 610 145-806 56-714 (987)
12 KOG2002 TPR-containing nuclear 100.0 2E-23 4.3E-28 217.8 62.8 663 134-810 42-757 (1018)
13 PRK09782 bacteriophage N4 rece 100.0 2.9E-22 6.2E-27 225.4 70.7 581 185-809 56-683 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 2.6E-23 5.7E-28 205.4 40.9 442 353-811 52-498 (966)
15 KOG2002 TPR-containing nuclear 99.9 2E-20 4.3E-25 195.7 59.3 597 189-801 146-801 (1018)
16 KOG4626 O-linked N-acetylgluco 99.9 1.7E-22 3.8E-27 199.7 39.1 447 282-781 51-502 (966)
17 TIGR00990 3a0801s09 mitochondr 99.9 3.1E-19 6.8E-24 198.5 53.6 96 315-413 128-223 (615)
18 KOG0495 HAT repeat protein [RN 99.9 1.4E-16 3E-21 159.4 62.2 591 187-806 265-888 (913)
19 TIGR00990 3a0801s09 mitochondr 99.9 3.2E-18 7E-23 190.4 54.7 431 279-762 127-570 (615)
20 PRK15174 Vi polysaccharide exp 99.9 1.7E-18 3.6E-23 191.5 46.3 359 394-762 15-380 (656)
21 PRK11788 tetratricopeptide rep 99.9 2.5E-19 5.5E-24 189.5 36.8 301 182-490 44-354 (389)
22 PRK10049 pgaA outer membrane p 99.9 1.6E-17 3.4E-22 188.1 53.3 412 352-806 18-464 (765)
23 PRK14574 hmsH outer membrane p 99.9 7E-17 1.5E-21 178.4 56.7 451 323-806 43-521 (822)
24 PRK11788 tetratricopeptide rep 99.9 4.5E-19 9.8E-24 187.6 36.7 298 462-797 43-346 (389)
25 KOG2076 RNA polymerase III tra 99.9 3.2E-15 6.8E-20 156.3 62.6 615 180-802 146-853 (895)
26 PRK15174 Vi polysaccharide exp 99.9 1.2E-17 2.7E-22 184.6 47.2 382 359-763 15-403 (656)
27 PRK10049 pgaA outer membrane p 99.9 2.5E-16 5.5E-21 178.3 53.5 426 311-779 12-470 (765)
28 KOG2076 RNA polymerase III tra 99.9 2.2E-14 4.7E-19 150.1 62.4 641 141-796 147-893 (895)
29 PRK14574 hmsH outer membrane p 99.8 3.5E-15 7.5E-20 165.1 56.2 439 289-762 44-512 (822)
30 KOG0495 HAT repeat protein [RN 99.8 4.6E-13 9.9E-18 134.7 62.5 559 221-806 264-854 (913)
31 KOG4422 Uncharacterized conser 99.8 3.5E-15 7.7E-20 142.1 42.7 360 348-729 206-591 (625)
32 KOG4422 Uncharacterized conser 99.8 7.6E-15 1.6E-19 139.9 43.4 297 185-486 127-465 (625)
33 KOG1915 Cell cycle control pro 99.8 1E-13 2.3E-18 133.9 50.4 474 316-802 75-589 (677)
34 KOG2003 TPR repeat-containing 99.8 9.9E-16 2.1E-20 146.7 34.6 489 286-796 208-720 (840)
35 KOG2003 TPR repeat-containing 99.8 7.2E-15 1.6E-19 140.8 39.4 485 205-714 198-709 (840)
36 KOG1915 Cell cycle control pro 99.7 5.4E-12 1.2E-16 122.3 49.3 233 488-727 321-584 (677)
37 KOG1173 Anaphase-promoting com 99.7 1.1E-12 2.4E-17 130.4 37.9 278 521-805 241-525 (611)
38 KOG2047 mRNA splicing factor [ 99.7 8.1E-10 1.8E-14 111.7 58.2 507 280-802 103-692 (835)
39 KOG0547 Translocase of outer m 99.7 3.7E-13 8E-18 131.0 33.4 224 570-802 337-570 (606)
40 KOG1155 Anaphase-promoting com 99.7 5.5E-12 1.2E-16 122.2 40.7 384 414-816 159-552 (559)
41 KOG2047 mRNA splicing factor [ 99.7 5.7E-10 1.2E-14 112.7 55.7 546 208-785 102-710 (835)
42 KOG1155 Anaphase-promoting com 99.7 5.4E-11 1.2E-15 115.5 46.0 366 309-692 159-535 (559)
43 KOG4318 Bicoid mRNA stability 99.7 2.8E-12 6.2E-17 133.7 38.6 246 199-469 16-286 (1088)
44 KOG4162 Predicted calmodulin-b 99.6 9.6E-11 2.1E-15 121.2 48.9 440 346-805 320-790 (799)
45 KOG3785 Uncharacterized conser 99.6 1.1E-11 2.5E-16 115.6 36.3 498 287-816 30-551 (557)
46 TIGR00540 hemY_coli hemY prote 99.6 1.8E-12 3.9E-17 136.2 35.0 289 501-798 96-399 (409)
47 PRK10747 putative protoheme IX 99.6 2.6E-12 5.7E-17 134.0 35.5 286 502-799 97-391 (398)
48 KOG1126 DNA-binding cell divis 99.6 1.8E-13 3.8E-18 139.0 25.0 210 591-806 418-628 (638)
49 KOG4318 Bicoid mRNA stability 99.6 5.9E-12 1.3E-16 131.4 35.6 129 668-799 463-595 (1088)
50 PF13429 TPR_15: Tetratricopep 99.6 5.3E-15 1.2E-19 147.5 12.4 260 530-798 14-277 (280)
51 KOG0547 Translocase of outer m 99.6 1.3E-11 2.9E-16 120.3 33.9 222 534-762 336-565 (606)
52 KOG1173 Anaphase-promoting com 99.6 1.2E-10 2.6E-15 116.1 40.5 498 179-706 22-529 (611)
53 PRK10747 putative protoheme IX 99.6 1.5E-11 3.3E-16 128.4 36.1 289 432-762 97-389 (398)
54 TIGR00540 hemY_coli hemY prote 99.6 9.2E-12 2E-16 130.8 34.5 292 432-762 97-398 (409)
55 KOG0985 Vesicle coat protein c 99.5 3E-08 6.4E-13 105.4 56.1 214 558-795 983-1246(1666)
56 PF13429 TPR_15: Tetratricopep 99.5 4.2E-14 9E-19 141.1 12.8 262 494-762 13-276 (280)
57 COG2956 Predicted N-acetylgluc 99.5 4.5E-11 9.8E-16 110.6 30.5 289 467-762 48-346 (389)
58 KOG1126 DNA-binding cell divis 99.5 4.3E-12 9.4E-17 129.1 26.1 263 490-763 354-620 (638)
59 KOG3785 Uncharacterized conser 99.5 2.3E-10 4.9E-15 107.1 35.0 452 322-802 30-494 (557)
60 COG2956 Predicted N-acetylgluc 99.5 8.7E-11 1.9E-15 108.8 31.9 289 502-797 48-346 (389)
61 KOG1174 Anaphase-promoting com 99.5 1.8E-09 3.8E-14 103.5 41.3 310 485-804 190-506 (564)
62 KOG1156 N-terminal acetyltrans 99.5 5E-09 1.1E-13 106.6 45.5 473 281-797 10-510 (700)
63 COG3071 HemY Uncharacterized e 99.5 1.9E-10 4.2E-15 110.1 33.5 286 503-798 98-390 (400)
64 COG3071 HemY Uncharacterized e 99.5 3E-10 6.4E-15 108.9 33.7 286 362-657 97-389 (400)
65 KOG1156 N-terminal acetyltrans 99.5 1.9E-08 4E-13 102.5 47.1 422 253-690 51-508 (700)
66 KOG3617 WD40 and TPR repeat-co 99.5 1.6E-08 3.5E-13 105.1 46.2 559 146-807 741-1368(1416)
67 KOG4162 Predicted calmodulin-b 99.4 4.2E-08 9.1E-13 102.1 46.6 440 303-762 312-782 (799)
68 KOG0985 Vesicle coat protein c 99.4 2E-07 4.2E-12 99.4 50.0 581 174-801 607-1311(1666)
69 KOG1129 TPR repeat-containing 99.4 4.2E-11 9E-16 110.7 19.3 240 528-808 227-468 (478)
70 KOG2376 Signal recognition par 99.4 4.3E-08 9.2E-13 98.9 40.8 148 644-795 356-517 (652)
71 KOG2376 Signal recognition par 99.4 4.1E-08 8.8E-13 99.0 40.3 182 538-725 321-517 (652)
72 TIGR02521 type_IV_pilW type IV 99.4 5.5E-10 1.2E-14 109.0 27.4 203 594-800 31-234 (234)
73 KOG1174 Anaphase-promoting com 99.4 6.8E-08 1.5E-12 92.9 38.7 293 465-768 207-503 (564)
74 KOG3616 Selective LIM binding 99.3 3.2E-07 6.9E-12 94.5 45.7 384 223-686 546-930 (1636)
75 PF12569 NARP1: NMDA receptor- 99.3 4.9E-08 1.1E-12 102.8 41.5 291 288-587 13-333 (517)
76 KOG1129 TPR repeat-containing 99.3 1.1E-09 2.5E-14 101.4 25.2 234 206-447 221-457 (478)
77 PRK12370 invasion protein regu 99.3 1.1E-09 2.3E-14 119.9 29.6 216 573-799 318-536 (553)
78 KOG1127 TPR repeat-containing 99.3 2.6E-06 5.7E-11 91.4 51.8 127 677-806 1051-1183(1238)
79 KOG3616 Selective LIM binding 99.3 9.8E-07 2.1E-11 91.0 46.6 188 184-406 743-930 (1636)
80 PF12569 NARP1: NMDA receptor- 99.3 1E-07 2.2E-12 100.3 41.0 292 321-622 11-333 (517)
81 KOG1840 Kinesin light chain [C 99.3 3E-09 6.6E-14 110.1 29.0 197 565-761 247-477 (508)
82 KOG1127 TPR repeat-containing 99.3 1.3E-06 2.8E-11 93.7 48.2 568 209-803 493-1109(1238)
83 KOG1840 Kinesin light chain [C 99.3 2.1E-09 4.5E-14 111.3 26.8 28 490-517 284-311 (508)
84 PRK11189 lipoprotein NlpI; Pro 99.3 3E-09 6.5E-14 106.2 27.0 231 573-812 40-279 (296)
85 PRK12370 invasion protein regu 99.3 3.1E-09 6.7E-14 116.3 28.7 217 538-763 318-535 (553)
86 TIGR02521 type_IV_pilW type IV 99.3 5.6E-09 1.2E-13 101.8 27.8 199 208-411 31-230 (234)
87 KOG0548 Molecular co-chaperone 99.2 4E-08 8.7E-13 98.2 31.6 93 707-802 366-459 (539)
88 PF13041 PPR_2: PPR repeat fam 99.2 4.6E-11 1E-15 82.3 6.6 49 347-395 1-49 (50)
89 KOG0548 Molecular co-chaperone 99.2 1.9E-07 4.1E-12 93.5 33.3 234 529-780 229-471 (539)
90 KOG0624 dsRNA-activated protei 99.2 2.2E-07 4.9E-12 87.1 31.6 292 460-762 44-369 (504)
91 KOG3617 WD40 and TPR repeat-co 99.2 2.6E-06 5.6E-11 89.3 42.4 237 182-479 737-992 (1416)
92 COG3063 PilF Tfp pilus assembl 99.2 2.8E-08 6.1E-13 88.3 24.4 206 596-805 37-243 (250)
93 PF13041 PPR_2: PPR repeat fam 99.2 9.3E-11 2E-15 80.8 6.8 49 206-254 1-49 (50)
94 COG3063 PilF Tfp pilus assembl 99.2 1.2E-08 2.6E-13 90.6 21.2 168 631-802 37-206 (250)
95 KOG4340 Uncharacterized conser 99.1 5.3E-07 1.1E-11 83.0 28.4 315 211-549 13-335 (459)
96 PRK11189 lipoprotein NlpI; Pro 99.1 1.3E-07 2.9E-12 94.4 27.2 226 538-773 40-274 (296)
97 cd05804 StaR_like StaR_like; a 99.0 1.3E-06 2.9E-11 91.1 34.9 205 594-799 114-337 (355)
98 KOG0624 dsRNA-activated protei 99.0 1.5E-05 3.3E-10 75.2 36.2 368 386-802 40-426 (504)
99 KOG4340 Uncharacterized conser 99.0 6.8E-07 1.5E-11 82.3 26.7 349 178-550 15-372 (459)
100 KOG2053 Mitochondrial inherita 99.0 9.2E-05 2E-09 79.3 48.6 162 632-796 439-606 (932)
101 cd05804 StaR_like StaR_like; a 99.0 4.8E-06 1E-10 86.9 35.1 262 498-763 52-336 (355)
102 KOG1125 TPR repeat-containing 99.0 4.4E-08 9.5E-13 98.8 18.1 224 534-801 295-530 (579)
103 KOG1914 mRNA cleavage and poly 98.9 8.8E-05 1.9E-09 74.8 41.6 154 645-800 347-503 (656)
104 PRK04841 transcriptional regul 98.9 6.2E-06 1.3E-10 97.9 38.6 204 599-802 536-764 (903)
105 PF04733 Coatomer_E: Coatomer 98.9 7.9E-08 1.7E-12 94.2 18.0 153 639-803 112-270 (290)
106 PF04733 Coatomer_E: Coatomer 98.9 1.1E-07 2.3E-12 93.3 18.5 252 499-768 11-268 (290)
107 KOG1125 TPR repeat-containing 98.9 3.2E-07 7E-12 92.8 21.9 260 497-790 293-563 (579)
108 PRK04841 transcriptional regul 98.9 1.7E-05 3.7E-10 94.3 38.9 335 254-589 385-761 (903)
109 KOG1914 mRNA cleavage and poly 98.8 0.00023 5E-09 71.9 42.0 418 171-622 18-500 (656)
110 PRK15359 type III secretion sy 98.8 2.3E-07 5E-12 81.0 15.8 115 684-806 13-129 (144)
111 PRK10370 formate-dependent nit 98.8 1.4E-06 3.1E-11 80.5 21.5 160 636-814 23-187 (198)
112 PLN02789 farnesyltranstransfer 98.8 6.2E-06 1.3E-10 82.1 27.1 221 572-800 50-304 (320)
113 KOG1128 Uncharacterized conser 98.8 2.1E-06 4.6E-11 89.3 23.3 214 563-798 402-616 (777)
114 KOG2053 Mitochondrial inherita 98.7 0.00073 1.6E-08 72.8 47.1 121 667-791 439-563 (932)
115 TIGR03302 OM_YfiO outer membra 98.7 1.9E-06 4.1E-11 83.7 21.0 190 591-801 30-235 (235)
116 KOG3060 Uncharacterized conser 98.7 1.2E-05 2.6E-10 72.9 23.5 187 571-762 24-219 (289)
117 PLN02789 farnesyltranstransfer 98.7 1.1E-05 2.3E-10 80.4 25.5 204 604-814 47-265 (320)
118 COG5010 TadD Flp pilus assembl 98.7 6E-06 1.3E-10 75.6 20.6 160 633-797 70-230 (257)
119 PRK15179 Vi polysaccharide bio 98.7 9.5E-06 2.1E-10 89.3 25.8 148 661-815 83-233 (694)
120 KOG3081 Vesicle coat complex C 98.6 2.1E-05 4.6E-10 71.9 22.9 248 498-762 17-270 (299)
121 KOG1128 Uncharacterized conser 98.6 4.2E-06 9.1E-11 87.2 20.7 116 642-761 498-614 (777)
122 PRK14720 transcript cleavage f 98.6 1.9E-05 4.1E-10 87.6 26.9 150 595-780 117-268 (906)
123 PRK14720 transcript cleavage f 98.6 2.1E-05 4.5E-10 87.3 26.4 238 523-816 30-269 (906)
124 PF12854 PPR_1: PPR repeat 98.6 6.4E-08 1.4E-12 59.4 4.0 32 309-340 2-33 (34)
125 KOG1070 rRNA processing protei 98.6 3.6E-05 7.7E-10 86.0 26.9 204 525-734 1459-1669(1710)
126 KOG1070 rRNA processing protei 98.6 4.2E-05 9.1E-10 85.5 27.5 239 542-788 1443-1690(1710)
127 TIGR02552 LcrH_SycD type III s 98.6 3.3E-06 7.2E-11 73.6 15.5 115 686-804 5-120 (135)
128 PF12854 PPR_1: PPR repeat 98.5 1.1E-07 2.4E-12 58.3 4.0 32 344-375 2-33 (34)
129 COG5010 TadD Flp pilus assembl 98.5 4.2E-05 9E-10 70.3 20.8 160 598-761 70-229 (257)
130 PRK15359 type III secretion sy 98.5 1.2E-05 2.6E-10 70.3 17.1 122 650-779 14-136 (144)
131 PRK10370 formate-dependent nit 98.5 2.7E-05 5.9E-10 72.1 20.2 124 642-769 52-178 (198)
132 COG4783 Putative Zn-dependent 98.4 0.00032 6.9E-09 70.5 27.2 150 600-772 312-462 (484)
133 KOG3081 Vesicle coat complex C 98.4 0.00024 5.2E-09 65.3 23.9 193 207-413 40-236 (299)
134 TIGR03302 OM_YfiO outer membra 98.4 5.3E-05 1.1E-09 73.5 20.9 60 354-413 171-232 (235)
135 PRK15179 Vi polysaccharide bio 98.4 0.00011 2.5E-09 81.0 25.4 134 591-727 83-216 (694)
136 COG4783 Putative Zn-dependent 98.4 0.00035 7.5E-09 70.2 25.1 138 640-799 317-455 (484)
137 KOG3060 Uncharacterized conser 98.3 0.00061 1.3E-08 62.2 24.2 187 537-727 25-219 (289)
138 PF09976 TPR_21: Tetratricopep 98.3 3.8E-05 8.2E-10 67.6 15.8 126 667-796 15-145 (145)
139 TIGR02552 LcrH_SycD type III s 98.3 3.7E-05 8.1E-10 67.0 15.5 116 651-771 5-120 (135)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.9E-05 8.6E-10 77.9 17.1 128 666-800 171-299 (395)
141 PF07079 DUF1347: Protein of u 98.3 0.0065 1.4E-07 60.6 46.1 121 674-797 389-523 (549)
142 KOG0553 TPR repeat-containing 98.2 1.5E-05 3.2E-10 74.7 12.2 91 709-803 91-183 (304)
143 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.6E-05 7.8E-10 65.4 12.8 105 700-804 3-111 (119)
144 PF09976 TPR_21: Tetratricopep 98.1 0.00016 3.4E-09 63.6 15.6 125 632-760 15-144 (145)
145 PRK15363 pathogenicity island 98.1 7.5E-05 1.6E-09 63.9 12.6 97 699-799 35-133 (157)
146 PLN03088 SGT1, suppressor of 98.0 7.6E-05 1.6E-09 76.5 14.0 89 671-762 9-98 (356)
147 PF13414 TPR_11: TPR repeat; P 98.0 1.8E-05 3.9E-10 59.2 7.0 66 733-800 2-69 (69)
148 cd00189 TPR Tetratricopeptide 98.0 8.2E-05 1.8E-09 60.1 11.7 97 702-800 3-99 (100)
149 KOG2041 WD40 repeat protein [G 98.0 0.017 3.8E-07 60.5 29.7 156 292-479 747-903 (1189)
150 PF13432 TPR_16: Tetratricopep 98.0 1.7E-05 3.6E-10 58.5 6.1 62 739-802 2-64 (65)
151 PRK02603 photosystem I assembl 98.0 0.00026 5.6E-09 64.5 15.0 113 667-802 38-153 (172)
152 PF12895 Apc3: Anaphase-promot 98.0 1.4E-05 3E-10 62.5 5.7 81 712-795 2-84 (84)
153 KOG0550 Molecular chaperone (D 98.0 0.0015 3.2E-08 64.1 20.0 154 569-727 179-349 (486)
154 COG4700 Uncharacterized protei 97.9 0.0044 9.5E-08 53.8 20.0 134 626-761 86-220 (251)
155 TIGR00756 PPR pentatricopeptid 97.9 2E-05 4.4E-10 49.3 4.6 33 351-383 2-34 (35)
156 PRK10153 DNA-binding transcrip 97.9 0.00081 1.8E-08 72.0 19.3 140 661-804 334-488 (517)
157 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00093 2E-08 68.1 18.7 122 282-410 172-294 (395)
158 KOG0553 TPR repeat-containing 97.9 0.00017 3.6E-09 67.8 12.0 94 639-737 91-185 (304)
159 PF14938 SNAP: Soluble NSF att 97.9 0.0034 7.4E-08 62.3 22.3 123 673-797 123-262 (282)
160 KOG0550 Molecular chaperone (D 97.9 0.0028 6.1E-08 62.2 20.2 88 710-799 260-351 (486)
161 KOG1130 Predicted G-alpha GTPa 97.9 0.00085 1.8E-08 65.4 16.4 132 666-797 197-343 (639)
162 KOG2041 WD40 repeat protein [G 97.9 0.04 8.8E-07 57.9 29.0 61 700-760 1022-1083(1189)
163 COG4700 Uncharacterized protei 97.9 0.0053 1.2E-07 53.2 19.0 133 661-797 86-221 (251)
164 CHL00033 ycf3 photosystem I as 97.8 0.00054 1.2E-08 62.2 14.1 122 680-803 15-154 (168)
165 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.045 9.7E-07 54.7 35.0 135 664-802 397-535 (660)
166 TIGR00756 PPR pentatricopeptid 97.8 4E-05 8.6E-10 48.0 4.6 33 210-242 2-34 (35)
167 KOG1924 RhoA GTPase effector D 97.8 0.049 1.1E-06 58.0 28.8 18 313-330 837-854 (1102)
168 PF13812 PPR_3: Pentatricopept 97.8 5E-05 1.1E-09 47.1 4.4 32 351-382 3-34 (34)
169 PF05843 Suf: Suppressor of fo 97.8 0.00096 2.1E-08 65.9 15.5 128 632-762 4-135 (280)
170 PF14559 TPR_19: Tetratricopep 97.7 9.7E-05 2.1E-09 55.0 6.4 56 745-802 2-58 (68)
171 COG4235 Cytochrome c biogenesi 97.7 0.0016 3.4E-08 61.9 15.6 121 680-805 138-263 (287)
172 PRK15363 pathogenicity island 97.7 0.0011 2.4E-08 56.9 13.2 96 666-763 37-132 (157)
173 PF13812 PPR_3: Pentatricopept 97.7 6.1E-05 1.3E-09 46.7 4.2 33 209-241 2-34 (34)
174 PF12895 Apc3: Anaphase-promot 97.7 8.4E-05 1.8E-09 58.1 5.9 81 677-760 2-84 (84)
175 KOG1538 Uncharacterized conser 97.7 0.0065 1.4E-07 63.0 20.4 102 384-514 556-657 (1081)
176 COG3898 Uncharacterized membra 97.7 0.063 1.4E-06 52.7 31.7 283 503-802 98-396 (531)
177 PF07079 DUF1347: Protein of u 97.7 0.073 1.6E-06 53.4 47.7 135 219-359 17-177 (549)
178 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00099 2.2E-08 56.4 12.9 98 666-763 4-105 (119)
179 PF14938 SNAP: Soluble NSF att 97.7 0.0021 4.6E-08 63.8 16.8 124 679-804 89-231 (282)
180 PRK10803 tol-pal system protei 97.7 0.0007 1.5E-08 65.4 12.8 102 700-805 144-253 (263)
181 cd00189 TPR Tetratricopeptide 97.7 0.00092 2E-08 53.8 11.8 94 667-762 3-96 (100)
182 PLN03088 SGT1, suppressor of 97.6 0.0014 3.1E-08 67.2 15.4 87 639-727 12-98 (356)
183 PF08579 RPM2: Mitochondrial r 97.6 0.0011 2.4E-08 52.4 10.7 76 213-288 30-113 (120)
184 PRK10153 DNA-binding transcrip 97.6 0.0036 7.8E-08 67.2 18.6 141 626-772 334-489 (517)
185 PRK02603 photosystem I assembl 97.6 0.0038 8.3E-08 56.8 16.1 129 629-783 35-165 (172)
186 PF12688 TPR_5: Tetratrico pep 97.6 0.0029 6.3E-08 52.4 13.7 57 671-727 8-66 (120)
187 KOG1538 Uncharacterized conser 97.6 0.0097 2.1E-07 61.8 19.9 96 179-304 562-657 (1081)
188 PF10037 MRP-S27: Mitochondria 97.6 0.0013 2.9E-08 67.2 14.1 121 277-397 64-186 (429)
189 PF13371 TPR_9: Tetratricopept 97.6 0.00033 7.2E-09 53.0 7.5 63 741-805 2-65 (73)
190 PF05843 Suf: Suppressor of fo 97.6 0.0012 2.6E-08 65.1 13.2 128 597-727 4-135 (280)
191 PF01535 PPR: PPR repeat; Int 97.6 0.0001 2.3E-09 44.4 3.5 26 317-342 3-28 (31)
192 PF01535 PPR: PPR repeat; Int 97.5 0.00011 2.4E-09 44.3 3.5 29 351-379 2-30 (31)
193 CHL00033 ycf3 photosystem I as 97.5 0.002 4.4E-08 58.4 13.3 95 664-760 35-139 (168)
194 PF10037 MRP-S27: Mitochondria 97.5 0.00085 1.8E-08 68.6 11.7 118 134-254 67-184 (429)
195 PRK15331 chaperone protein Sic 97.5 0.0061 1.3E-07 52.6 14.5 95 705-802 43-137 (165)
196 PF08579 RPM2: Mitochondrial r 97.5 0.0016 3.5E-08 51.5 10.0 77 284-360 30-115 (120)
197 PRK10866 outer membrane biogen 97.5 0.028 6E-07 54.1 20.5 185 593-796 31-239 (243)
198 KOG2796 Uncharacterized conser 97.4 0.03 6.5E-07 51.7 18.3 132 669-801 182-318 (366)
199 PF06239 ECSIT: Evolutionarily 97.4 0.0041 8.9E-08 56.0 12.4 103 207-329 46-153 (228)
200 PRK10866 outer membrane biogen 97.3 0.064 1.4E-06 51.6 21.2 58 704-761 180-239 (243)
201 KOG1130 Predicted G-alpha GTPa 97.3 0.0022 4.7E-08 62.7 10.5 131 386-516 197-342 (639)
202 PF13432 TPR_16: Tetratricopep 97.3 0.0011 2.3E-08 48.7 6.9 56 705-762 3-59 (65)
203 PF12688 TPR_5: Tetratrico pep 97.3 0.017 3.7E-07 47.9 14.4 106 704-815 6-117 (120)
204 PF13414 TPR_11: TPR repeat; P 97.2 0.0013 2.8E-08 49.0 7.0 63 698-762 2-66 (69)
205 PF06239 ECSIT: Evolutionarily 97.2 0.0045 9.8E-08 55.8 11.3 87 292-397 65-151 (228)
206 COG4235 Cytochrome c biogenesi 97.2 0.022 4.8E-07 54.4 15.8 100 661-763 153-256 (287)
207 PF13281 DUF4071: Domain of un 97.1 0.079 1.7E-06 53.3 19.8 163 638-802 150-338 (374)
208 KOG0543 FKBP-type peptidyl-pro 97.1 0.01 2.3E-07 58.7 12.9 68 736-804 259-326 (397)
209 PF04840 Vps16_C: Vps16, C-ter 97.1 0.41 8.9E-06 47.9 27.8 107 351-477 179-285 (319)
210 KOG1941 Acetylcholine receptor 97.0 0.037 8E-07 53.6 15.6 168 630-798 84-275 (518)
211 PF13424 TPR_12: Tetratricopep 97.0 0.0019 4.1E-08 49.5 6.0 63 736-798 7-75 (78)
212 PRK10803 tol-pal system protei 97.0 0.016 3.4E-07 56.2 13.4 102 665-770 144-251 (263)
213 COG1729 Uncharacterized protei 97.0 0.024 5.2E-07 53.4 13.8 106 701-807 144-253 (262)
214 KOG2114 Vacuolar assembly/sort 97.0 0.84 1.8E-05 49.9 28.4 147 175-340 370-516 (933)
215 KOG0543 FKBP-type peptidyl-pro 97.0 0.021 4.4E-07 56.7 13.8 101 699-802 257-359 (397)
216 COG0457 NrfG FOG: TPR repeat [ 96.9 0.43 9.4E-06 46.2 30.3 203 595-801 60-268 (291)
217 PF14559 TPR_19: Tetratricopep 96.9 0.0042 9.1E-08 46.0 7.1 63 184-249 2-64 (68)
218 PF13512 TPR_18: Tetratricopep 96.9 0.013 2.9E-07 49.4 10.5 58 706-763 17-76 (142)
219 PF13525 YfiO: Outer membrane 96.9 0.11 2.4E-06 48.6 18.1 56 288-343 14-71 (203)
220 PF13525 YfiO: Outer membrane 96.8 0.23 4.9E-06 46.5 19.6 74 180-253 12-87 (203)
221 KOG1258 mRNA processing protei 96.8 0.98 2.1E-05 47.7 35.2 185 523-713 296-489 (577)
222 KOG2280 Vacuolar assembly/sort 96.7 1.2 2.5E-05 48.3 34.9 334 425-794 443-795 (829)
223 PRK11906 transcriptional regul 96.7 0.067 1.5E-06 54.7 15.7 150 644-799 273-437 (458)
224 KOG2796 Uncharacterized conser 96.7 0.53 1.1E-05 43.9 22.8 132 631-763 179-315 (366)
225 KOG1586 Protein required for f 96.7 0.49 1.1E-05 43.3 19.9 88 678-767 128-226 (288)
226 PRK15331 chaperone protein Sic 96.6 0.055 1.2E-06 46.9 12.4 90 671-762 44-133 (165)
227 PF13371 TPR_9: Tetratricopept 96.6 0.013 2.8E-07 44.1 7.9 55 707-762 3-57 (73)
228 COG3898 Uncharacterized membra 96.6 0.86 1.9E-05 45.2 33.5 80 467-552 133-216 (531)
229 KOG1941 Acetylcholine receptor 96.6 0.28 6E-06 47.8 17.9 128 599-726 127-273 (518)
230 PF13281 DUF4071: Domain of un 96.6 0.66 1.4E-05 46.9 21.5 173 563-763 145-334 (374)
231 PF13512 TPR_18: Tetratricopep 96.6 0.1 2.2E-06 44.2 13.4 122 666-805 12-135 (142)
232 PF13424 TPR_12: Tetratricopep 96.6 0.011 2.3E-07 45.3 7.2 63 700-762 6-74 (78)
233 KOG2280 Vacuolar assembly/sort 96.6 1.5 3.3E-05 47.4 26.3 108 457-583 687-794 (829)
234 PRK11906 transcriptional regul 96.5 0.33 7.1E-06 49.9 19.1 148 609-762 273-435 (458)
235 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.012 2.6E-07 59.8 8.9 110 698-813 74-191 (453)
236 PF10300 DUF3808: Protein of u 96.5 0.15 3.2E-06 54.6 17.8 166 632-800 191-378 (468)
237 PF04184 ST7: ST7 protein; In 96.5 0.28 6.1E-06 50.3 18.0 103 703-805 263-382 (539)
238 PF04840 Vps16_C: Vps16, C-ter 96.5 1.2 2.5E-05 44.8 30.5 111 421-551 179-289 (319)
239 PF13428 TPR_14: Tetratricopep 96.4 0.0063 1.4E-07 40.1 4.5 37 770-806 2-38 (44)
240 KOG1258 mRNA processing protei 96.4 1.8 3.8E-05 45.9 37.3 186 557-748 295-489 (577)
241 KOG2114 Vacuolar assembly/sort 96.4 1 2.2E-05 49.4 22.1 179 281-480 336-516 (933)
242 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.095 2.1E-06 53.5 13.1 66 661-728 72-141 (453)
243 PF07719 TPR_2: Tetratricopept 96.2 0.011 2.5E-07 36.2 4.4 33 770-802 2-34 (34)
244 PF03704 BTAD: Bacterial trans 96.2 0.097 2.1E-06 46.0 12.0 114 674-806 16-138 (146)
245 KOG1585 Protein required for f 96.2 0.58 1.2E-05 43.2 16.3 55 352-407 193-250 (308)
246 PF02259 FAT: FAT domain; Int 96.0 2.4 5.3E-05 43.9 23.6 137 663-801 145-341 (352)
247 KOG1920 IkappaB kinase complex 95.9 4.4 9.6E-05 46.6 25.8 108 492-619 942-1051(1265)
248 PF00515 TPR_1: Tetratricopept 95.9 0.014 3E-07 35.9 3.7 32 770-801 2-33 (34)
249 KOG4555 TPR repeat-containing 95.9 0.15 3.3E-06 41.6 10.3 53 674-727 53-105 (175)
250 COG2976 Uncharacterized protei 95.9 0.58 1.3E-05 41.7 14.7 94 706-803 96-193 (207)
251 COG5107 RNA14 Pre-mRNA 3'-end 95.8 2.4 5.3E-05 43.0 41.5 129 490-622 398-530 (660)
252 COG3118 Thioredoxin domain-con 95.8 1.1 2.5E-05 42.9 17.6 121 639-763 144-265 (304)
253 KOG1585 Protein required for f 95.8 1.4 3.1E-05 40.7 17.1 93 701-794 152-252 (308)
254 KOG1550 Extracellular protein 95.7 4.2 9.1E-05 44.9 27.5 181 609-803 343-543 (552)
255 KOG4234 TPR repeat-containing 95.6 0.13 2.7E-06 45.7 9.7 92 708-803 104-202 (271)
256 KOG2610 Uncharacterized conser 95.6 0.3 6.5E-06 47.1 12.7 154 605-761 114-274 (491)
257 KOG1920 IkappaB kinase complex 95.6 6.2 0.00013 45.5 26.0 110 632-761 942-1053(1265)
258 PF13428 TPR_14: Tetratricopep 95.5 0.046 9.9E-07 36.0 5.3 39 736-776 3-42 (44)
259 PF03704 BTAD: Bacterial trans 95.5 0.1 2.2E-06 46.0 9.0 55 320-375 68-122 (146)
260 COG0457 NrfG FOG: TPR repeat [ 95.4 2.7 5.8E-05 40.4 32.7 200 560-763 60-265 (291)
261 PF10300 DUF3808: Protein of u 95.3 1.2 2.7E-05 47.7 18.1 26 562-587 191-216 (468)
262 COG3118 Thioredoxin domain-con 95.3 1.3 2.9E-05 42.5 15.8 140 672-815 142-283 (304)
263 smart00299 CLH Clathrin heavy 95.2 1.4 3E-05 38.3 15.5 84 319-410 12-95 (140)
264 COG4649 Uncharacterized protei 95.1 2 4.3E-05 37.5 14.9 123 675-797 69-195 (221)
265 KOG4648 Uncharacterized conser 95.1 0.084 1.8E-06 50.8 7.6 94 707-803 105-199 (536)
266 PF12921 ATP13: Mitochondrial 95.1 0.31 6.7E-06 41.0 10.3 49 346-394 49-98 (126)
267 smart00299 CLH Clathrin heavy 95.1 1.3 2.8E-05 38.5 14.7 42 214-256 13-54 (140)
268 COG4105 ComL DNA uptake lipopr 95.1 3.2 6.9E-05 39.2 20.9 57 495-551 173-231 (254)
269 PF09205 DUF1955: Domain of un 95.0 1.8 3.8E-05 35.9 14.1 59 635-694 92-150 (161)
270 COG1729 Uncharacterized protei 94.9 0.46 1E-05 45.0 11.9 97 666-763 144-244 (262)
271 PF04053 Coatomer_WDAD: Coatom 94.9 0.75 1.6E-05 48.5 14.8 155 499-689 271-427 (443)
272 PF12921 ATP13: Mitochondrial 94.9 0.54 1.2E-05 39.6 11.0 52 379-430 47-99 (126)
273 KOG2610 Uncharacterized conser 94.8 2.2 4.9E-05 41.4 16.0 154 571-727 115-275 (491)
274 PF13431 TPR_17: Tetratricopep 94.8 0.039 8.4E-07 33.7 3.0 31 757-789 2-33 (34)
275 KOG4555 TPR repeat-containing 94.6 0.83 1.8E-05 37.5 10.7 90 638-728 52-144 (175)
276 PF13176 TPR_7: Tetratricopept 94.6 0.033 7.1E-07 34.7 2.4 26 772-797 2-27 (36)
277 KOG2062 26S proteasome regulat 94.5 8.7 0.00019 41.9 39.3 156 216-378 67-239 (929)
278 KOG3941 Intermediate in Toll s 94.5 0.35 7.7E-06 45.4 9.8 88 223-330 87-174 (406)
279 PF04053 Coatomer_WDAD: Coatom 94.3 0.56 1.2E-05 49.4 12.1 100 324-444 328-427 (443)
280 COG4105 ComL DNA uptake lipopr 94.3 4.9 0.00011 38.0 22.9 53 291-343 46-100 (254)
281 PF13181 TPR_8: Tetratricopept 94.3 0.075 1.6E-06 32.5 3.6 32 770-801 2-33 (34)
282 PF07035 Mic1: Colon cancer-as 94.2 3.8 8.3E-05 36.2 15.5 131 266-412 16-148 (167)
283 PF04184 ST7: ST7 protein; In 94.1 3.9 8.5E-05 42.4 17.0 63 315-377 260-323 (539)
284 PF09205 DUF1955: Domain of un 94.1 2.9 6.3E-05 34.7 14.6 63 457-520 89-151 (161)
285 PF13170 DUF4003: Protein of u 94.0 7.1 0.00015 38.8 20.2 49 366-414 79-133 (297)
286 KOG3364 Membrane protein invol 94.0 1.2 2.7E-05 36.9 10.7 74 731-805 29-107 (149)
287 PF08631 SPO22: Meiosis protei 93.9 7.4 0.00016 38.6 26.3 16 464-479 256-271 (278)
288 PF08631 SPO22: Meiosis protei 93.8 7.5 0.00016 38.5 26.3 20 777-796 254-273 (278)
289 PF02259 FAT: FAT domain; Int 93.8 9.5 0.00021 39.5 21.4 108 698-805 145-294 (352)
290 COG2976 Uncharacterized protei 93.8 3.9 8.4E-05 36.7 14.2 93 670-764 95-189 (207)
291 PF10602 RPN7: 26S proteasome 93.5 2.2 4.8E-05 38.6 13.0 100 699-798 36-142 (177)
292 COG0790 FOG: TPR repeat, SEL1 93.5 9 0.0002 38.4 25.1 158 643-810 91-278 (292)
293 COG3629 DnrI DNA-binding trans 93.5 0.8 1.7E-05 44.2 10.5 75 699-774 153-232 (280)
294 KOG3941 Intermediate in Toll s 93.5 0.77 1.7E-05 43.3 9.9 88 398-504 86-173 (406)
295 PF10602 RPN7: 26S proteasome 93.3 1.3 2.8E-05 40.2 11.1 93 352-446 39-140 (177)
296 COG2909 MalT ATP-dependent tra 93.3 17 0.00037 40.9 25.4 203 599-801 420-650 (894)
297 PF13174 TPR_6: Tetratricopept 93.2 0.17 3.7E-06 30.5 3.8 31 771-801 2-32 (33)
298 PF09613 HrpB1_HrpK: Bacterial 93.1 4.5 9.9E-05 35.3 13.4 120 664-790 7-130 (160)
299 PF13170 DUF4003: Protein of u 92.9 11 0.00024 37.5 19.1 48 296-343 79-132 (297)
300 COG1747 Uncharacterized N-term 92.8 14 0.0003 38.6 23.1 165 591-763 63-234 (711)
301 PF06552 TOM20_plant: Plant sp 92.7 1.3 2.7E-05 39.2 9.6 94 680-778 7-122 (186)
302 PF13176 TPR_7: Tetratricopept 92.7 0.26 5.7E-06 30.6 4.2 27 736-762 1-27 (36)
303 PF14853 Fis1_TPR_C: Fis1 C-te 92.6 0.41 8.9E-06 32.7 5.1 34 772-805 4-37 (53)
304 PF10345 Cohesin_load: Cohesin 92.4 23 0.00049 39.9 43.8 167 279-446 59-252 (608)
305 COG3947 Response regulator con 92.3 10 0.00023 36.4 15.4 69 736-806 281-355 (361)
306 PF00515 TPR_1: Tetratricopept 92.1 0.37 7.9E-06 29.3 4.3 27 736-762 3-29 (34)
307 KOG1550 Extracellular protein 92.1 23 0.00049 39.2 27.2 77 679-763 454-538 (552)
308 KOG2471 TPR repeat-containing 92.1 2.9 6.2E-05 43.0 12.3 110 672-782 248-382 (696)
309 PF04097 Nic96: Nup93/Nic96; 92.0 24 0.00053 39.5 21.7 17 709-725 515-531 (613)
310 PF02284 COX5A: Cytochrome c o 92.0 2.7 5.9E-05 33.0 9.4 62 752-814 28-89 (108)
311 COG4649 Uncharacterized protei 91.8 8.5 0.00018 33.8 15.7 54 184-237 69-123 (221)
312 PF07719 TPR_2: Tetratricopept 91.7 0.43 9.2E-06 29.0 4.3 27 736-762 3-29 (34)
313 PF09986 DUF2225: Uncharacteri 91.3 3 6.6E-05 39.0 11.3 105 711-818 89-211 (214)
314 KOG2066 Vacuolar assembly/sort 91.2 28 0.00061 38.6 28.7 170 180-377 363-533 (846)
315 PF11207 DUF2989: Protein of u 90.6 3.6 7.7E-05 37.4 10.3 81 709-791 117-200 (203)
316 PRK09687 putative lyase; Provi 90.4 20 0.00043 35.5 27.9 125 662-800 140-265 (280)
317 TIGR02561 HrpB1_HrpK type III 90.3 9.4 0.0002 32.8 11.9 61 664-728 7-73 (153)
318 COG4785 NlpI Lipoprotein NlpI, 90.2 15 0.00032 33.8 20.2 188 603-802 74-270 (297)
319 PF06552 TOM20_plant: Plant sp 90.2 2.7 5.8E-05 37.3 9.0 110 645-765 7-138 (186)
320 COG3629 DnrI DNA-binding trans 90.1 3.7 7.9E-05 39.9 10.8 78 664-742 153-235 (280)
321 KOG4234 TPR repeat-containing 90.0 7.2 0.00016 35.1 11.4 86 674-762 105-196 (271)
322 PF10345 Cohesin_load: Cohesin 89.9 38 0.00083 38.1 43.8 187 294-481 36-252 (608)
323 cd00923 Cyt_c_Oxidase_Va Cytoc 89.7 7.3 0.00016 30.4 9.7 64 750-814 23-86 (103)
324 COG3947 Response regulator con 89.3 22 0.00047 34.4 16.1 57 319-376 284-340 (361)
325 COG4455 ImpE Protein of avirul 89.0 3.5 7.6E-05 37.6 8.9 59 703-762 5-63 (273)
326 PF13431 TPR_17: Tetratricopep 89.0 0.54 1.2E-05 28.7 2.9 19 735-753 14-32 (34)
327 KOG0276 Vesicle coat complex C 88.6 5.1 0.00011 42.5 11.0 147 327-513 599-745 (794)
328 KOG4642 Chaperone-dependent E3 88.4 4.4 9.5E-05 37.6 9.3 118 673-794 19-142 (284)
329 TIGR03504 FimV_Cterm FimV C-te 88.3 0.79 1.7E-05 29.8 3.4 24 774-797 4-27 (44)
330 PF09613 HrpB1_HrpK: Bacterial 88.1 17 0.00038 31.8 13.7 70 184-256 21-90 (160)
331 PF13374 TPR_10: Tetratricopep 88.0 1 2.2E-05 28.9 4.0 28 770-797 3-30 (42)
332 smart00028 TPR Tetratricopepti 88.0 0.9 1.9E-05 26.6 3.6 31 771-801 3-33 (34)
333 KOG4570 Uncharacterized conser 87.9 6 0.00013 38.3 10.2 103 203-308 59-164 (418)
334 PF04097 Nic96: Nup93/Nic96; 87.6 54 0.0012 36.9 22.9 88 426-518 265-356 (613)
335 KOG0276 Vesicle coat complex C 87.1 9.4 0.0002 40.6 11.8 132 281-445 616-747 (794)
336 COG0790 FOG: TPR repeat, SEL1 86.9 36 0.00077 34.1 23.6 118 644-768 128-271 (292)
337 PF07035 Mic1: Colon cancer-as 86.6 23 0.00049 31.5 15.9 56 317-376 92-147 (167)
338 KOG4642 Chaperone-dependent E3 86.6 12 0.00027 34.8 11.0 119 638-760 19-143 (284)
339 COG5178 PRP8 U5 snRNP spliceos 86.4 0.58 1.2E-05 52.5 3.2 15 5-19 2-16 (2365)
340 KOG1464 COP9 signalosome, subu 85.9 32 0.0007 32.6 17.5 49 293-341 41-92 (440)
341 PF13181 TPR_8: Tetratricopept 85.7 1.5 3.2E-05 26.5 3.6 27 736-762 3-29 (34)
342 KOG0687 26S proteasome regulat 85.4 40 0.00086 33.2 16.5 97 349-447 104-209 (393)
343 KOG0403 Neoplastic transformat 84.8 51 0.0011 34.0 27.9 73 668-745 513-585 (645)
344 COG2909 MalT ATP-dependent tra 84.8 78 0.0017 36.0 28.2 20 180-199 367-386 (894)
345 cd00923 Cyt_c_Oxidase_Va Cytoc 84.7 8.7 0.00019 30.0 7.7 44 718-761 26-69 (103)
346 COG1747 Uncharacterized N-term 84.7 56 0.0012 34.4 25.9 162 632-801 69-237 (711)
347 KOG0292 Vesicle coat complex C 84.5 78 0.0017 35.9 22.1 108 709-816 1001-1131(1202)
348 PF13374 TPR_10: Tetratricopep 84.4 2.5 5.5E-05 26.9 4.5 28 735-762 3-30 (42)
349 KOG4507 Uncharacterized conser 84.4 3.3 7.2E-05 43.5 7.2 96 709-805 617-712 (886)
350 PRK10941 hypothetical protein; 84.1 11 0.00023 36.8 10.3 77 737-815 184-262 (269)
351 KOG4570 Uncharacterized conser 83.9 13 0.00029 36.0 10.4 103 589-693 59-164 (418)
352 KOG0545 Aryl-hydrocarbon recep 83.7 23 0.0005 33.2 11.4 71 736-808 232-303 (329)
353 KOG4648 Uncharacterized conser 83.0 7.2 0.00016 38.2 8.4 94 636-733 104-197 (536)
354 PRK15180 Vi polysaccharide bio 82.8 64 0.0014 33.6 31.8 121 325-449 300-421 (831)
355 PRK11619 lytic murein transgly 82.6 92 0.002 35.2 38.6 205 571-795 253-465 (644)
356 COG4785 NlpI Lipoprotein NlpI, 82.6 40 0.00087 31.1 18.3 159 594-763 99-266 (297)
357 KOG4077 Cytochrome c oxidase, 82.6 25 0.00054 29.0 9.8 62 752-814 67-128 (149)
358 PF02284 COX5A: Cytochrome c o 82.1 9.3 0.0002 30.2 7.1 45 718-762 29-73 (108)
359 KOG2063 Vacuolar assembly/sort 81.8 1.1E+02 0.0024 35.5 23.6 27 457-483 507-533 (877)
360 PF11207 DUF2989: Protein of u 81.6 14 0.00031 33.6 9.3 71 472-543 124-197 (203)
361 PF13174 TPR_6: Tetratricopept 81.0 2.2 4.8E-05 25.4 3.0 26 737-762 3-28 (33)
362 KOG3364 Membrane protein invol 81.0 25 0.00054 29.6 9.6 66 662-727 30-99 (149)
363 KOG1464 COP9 signalosome, subu 80.5 54 0.0012 31.2 18.1 208 519-726 21-258 (440)
364 PF04910 Tcf25: Transcriptiona 80.2 77 0.0017 32.7 16.7 55 707-761 111-166 (360)
365 PF07721 TPR_4: Tetratricopept 79.4 2.7 5.9E-05 23.6 2.7 21 773-793 5-25 (26)
366 PF07575 Nucleopor_Nup85: Nup8 79.2 70 0.0015 35.7 16.0 24 208-232 149-172 (566)
367 KOG2396 HAT (Half-A-TPR) repea 78.6 94 0.002 32.8 38.5 100 696-797 456-558 (568)
368 KOG2062 26S proteasome regulat 78.5 1.2E+02 0.0025 33.9 37.0 122 602-727 509-634 (929)
369 PF09986 DUF2225: Uncharacteri 78.0 47 0.001 31.2 12.0 25 704-728 170-194 (214)
370 TIGR03504 FimV_Cterm FimV C-te 77.7 5 0.00011 26.2 3.9 23 320-342 5-27 (44)
371 TIGR02561 HrpB1_HrpK type III 77.7 46 0.00099 28.8 12.5 53 185-238 22-74 (153)
372 PRK09687 putative lyase; Provi 77.4 79 0.0017 31.3 28.5 121 418-552 141-262 (280)
373 COG4976 Predicted methyltransf 76.9 4.9 0.00011 37.0 4.9 56 745-802 6-62 (287)
374 PF07720 TPR_3: Tetratricopept 76.2 8.3 0.00018 23.9 4.4 31 771-801 3-35 (36)
375 COG5187 RPN7 26S proteasome re 76.1 77 0.0017 30.7 12.4 160 651-812 60-235 (412)
376 TIGR02508 type_III_yscG type I 75.5 25 0.00054 27.7 7.5 51 323-379 48-98 (115)
377 KOG2391 Vacuolar sorting prote 75.3 89 0.0019 30.9 14.0 53 204-257 295-347 (365)
378 COG4941 Predicted RNA polymera 75.3 65 0.0014 31.9 12.0 124 680-806 272-402 (415)
379 KOG4507 Uncharacterized conser 74.3 13 0.00027 39.5 7.6 127 648-778 592-719 (886)
380 PF07721 TPR_4: Tetratricopept 74.2 5 0.00011 22.5 2.8 21 738-758 5-25 (26)
381 PF10579 Rapsyn_N: Rapsyn N-te 73.6 13 0.00027 27.9 5.4 50 745-794 17-68 (80)
382 KOG0376 Serine-threonine phosp 73.6 4.9 0.00011 41.5 4.6 102 672-779 12-115 (476)
383 KOG1785 Tyrosine kinase negati 73.5 11 0.00025 37.3 6.7 6 4-9 481-486 (563)
384 COG4455 ImpE Protein of avirul 72.5 53 0.0012 30.4 10.1 123 667-802 4-138 (273)
385 KOG1586 Protein required for f 70.9 94 0.002 29.2 23.5 183 499-727 24-223 (288)
386 PHA02537 M terminase endonucle 70.8 80 0.0017 29.9 11.4 113 673-807 92-216 (230)
387 smart00028 TPR Tetratricopepti 70.7 8.8 0.00019 21.9 3.8 27 736-762 3-29 (34)
388 PF14853 Fis1_TPR_C: Fis1 C-te 70.5 16 0.00034 25.1 5.1 29 739-769 6-34 (53)
389 PF00637 Clathrin: Region in C 70.5 1.5 3.3E-05 38.2 0.2 50 289-338 17-66 (143)
390 KOG0551 Hsp90 co-chaperone CNS 69.8 34 0.00073 33.8 8.9 95 666-762 83-181 (390)
391 PHA02940 hypothetical protein; 69.7 98 0.0021 29.0 14.0 75 736-818 144-218 (315)
392 PF14689 SPOB_a: Sensor_kinase 69.7 11 0.00024 26.9 4.5 45 716-762 7-51 (62)
393 PF00637 Clathrin: Region in C 69.2 1.2 2.7E-05 38.7 -0.6 83 635-724 13-95 (143)
394 PF07163 Pex26: Pex26 protein; 68.8 1.2E+02 0.0026 29.5 12.8 87 671-757 90-181 (309)
395 PF10579 Rapsyn_N: Rapsyn N-te 68.5 18 0.0004 27.1 5.3 14 679-692 21-34 (80)
396 KOG2297 Predicted translation 68.1 1.3E+02 0.0027 29.6 15.8 20 419-438 321-340 (412)
397 PF11846 DUF3366: Domain of un 66.7 15 0.00033 34.0 6.0 44 755-800 132-175 (193)
398 TIGR02508 type_III_yscG type I 66.5 64 0.0014 25.6 8.8 51 358-414 48-98 (115)
399 KOG0545 Aryl-hydrocarbon recep 66.1 48 0.001 31.2 8.6 48 771-819 232-279 (329)
400 PF08424 NRDE-2: NRDE-2, neces 65.7 1.6E+02 0.0035 29.9 20.4 119 645-765 47-185 (321)
401 PF14669 Asp_Glu_race_2: Putat 65.5 1.1E+02 0.0023 27.8 14.1 54 635-688 138-205 (233)
402 KOG2659 LisH motif-containing 65.2 1.2E+02 0.0027 28.4 11.9 62 662-725 24-90 (228)
403 KOG2422 Uncharacterized conser 65.2 2.1E+02 0.0045 31.0 15.8 94 707-800 350-450 (665)
404 PF12862 Apc5: Anaphase-promot 64.9 24 0.00053 27.8 6.1 23 740-762 47-69 (94)
405 KOG4077 Cytochrome c oxidase, 64.9 51 0.0011 27.3 7.6 44 719-762 69-112 (149)
406 KOG2396 HAT (Half-A-TPR) repea 63.9 2E+02 0.0044 30.5 40.6 93 633-727 464-558 (568)
407 COG5159 RPN6 26S proteasome re 63.4 1.5E+02 0.0032 28.8 19.2 121 182-302 12-148 (421)
408 KOG0551 Hsp90 co-chaperone CNS 63.3 1.6E+02 0.0035 29.4 12.0 96 629-726 81-180 (390)
409 PF10255 Paf67: RNA polymerase 62.6 92 0.002 32.4 11.0 61 702-762 125-192 (404)
410 KOG2471 TPR repeat-containing 62.6 2.1E+02 0.0046 30.2 24.5 38 533-571 344-381 (696)
411 PF13929 mRNA_stabil: mRNA sta 61.5 1.7E+02 0.0037 28.8 17.9 115 330-444 144-263 (292)
412 PF04190 DUF410: Protein of un 61.4 1.7E+02 0.0036 28.7 19.9 103 326-443 2-114 (260)
413 KOG2908 26S proteasome regulat 61.3 1.6E+02 0.0034 29.5 11.5 82 672-753 83-176 (380)
414 PF14561 TPR_20: Tetratricopep 61.2 52 0.0011 25.7 7.1 31 733-763 21-51 (90)
415 PF07163 Pex26: Pex26 protein; 60.8 1.7E+02 0.0037 28.5 13.6 92 210-302 85-181 (309)
416 KOG2297 Predicted translation 60.7 1.8E+02 0.0038 28.7 19.8 20 490-509 322-341 (412)
417 KOG0890 Protein kinase of the 60.6 5E+02 0.011 33.9 35.0 321 459-800 1388-1733(2382)
418 cd00280 TRFH Telomeric Repeat 59.1 68 0.0015 28.8 8.0 48 715-762 85-139 (200)
419 PF12862 Apc5: Anaphase-promot 58.6 72 0.0016 25.1 7.7 22 706-727 48-69 (94)
420 KOG3824 Huntingtin interacting 58.2 37 0.0008 33.0 6.7 61 744-806 126-187 (472)
421 PHA02875 ankyrin repeat protei 58.2 2.5E+02 0.0055 29.7 14.5 16 322-337 73-88 (413)
422 KOG2066 Vacuolar assembly/sort 57.7 3.3E+02 0.0071 30.9 32.5 55 356-412 363-420 (846)
423 KOG0128 RNA-binding protein SA 57.4 3.4E+02 0.0074 31.0 36.2 435 326-794 91-559 (881)
424 PF10366 Vps39_1: Vacuolar sor 56.8 48 0.001 27.0 6.5 27 351-377 41-67 (108)
425 KOG2063 Vacuolar assembly/sort 56.7 3.8E+02 0.0083 31.3 27.2 62 176-237 310-375 (877)
426 PF14689 SPOB_a: Sensor_kinase 56.6 25 0.00054 25.2 4.2 46 750-797 6-51 (62)
427 PRK12798 chemotaxis protein; R 55.7 2.6E+02 0.0057 29.1 19.7 193 606-805 124-331 (421)
428 PF09670 Cas_Cas02710: CRISPR- 54.3 1.3E+02 0.0029 31.3 10.9 56 637-693 139-198 (379)
429 cd00280 TRFH Telomeric Repeat 53.4 1.7E+02 0.0038 26.4 11.5 48 330-377 85-139 (200)
430 PF09477 Type_III_YscG: Bacter 53.2 1.2E+02 0.0026 24.5 8.5 78 294-378 21-98 (116)
431 KOG1308 Hsp70-interacting prot 52.7 19 0.00042 35.6 4.1 85 642-729 127-212 (377)
432 KOG0376 Serine-threonine phosp 52.3 35 0.00076 35.6 6.0 102 636-743 11-114 (476)
433 KOG2391 Vacuolar sorting prote 52.0 52 0.0011 32.5 6.7 52 172-224 298-349 (365)
434 smart00777 Mad3_BUB1_I Mad3/BU 51.4 94 0.002 26.2 7.4 41 718-758 82-123 (125)
435 PF00244 14-3-3: 14-3-3 protei 50.8 2.3E+02 0.0051 27.1 14.8 58 599-656 6-64 (236)
436 PRK11619 lytic murein transgly 50.6 4.3E+02 0.0092 30.1 39.8 322 280-621 35-373 (644)
437 cd08819 CARD_MDA5_2 Caspase ac 50.0 1.2E+02 0.0025 23.5 6.9 63 475-543 23-85 (88)
438 PF09670 Cas_Cas02710: CRISPR- 49.8 2.1E+02 0.0046 29.8 11.6 53 324-377 141-197 (379)
439 PF11817 Foie-gras_1: Foie gra 49.7 93 0.002 30.1 8.5 56 739-794 183-243 (247)
440 KOG2581 26S proteasome regulat 49.2 3.2E+02 0.007 28.2 16.9 95 705-803 175-281 (493)
441 KOG0687 26S proteasome regulat 48.8 2.9E+02 0.0063 27.6 18.6 98 699-798 104-210 (393)
442 PF11848 DUF3368: Domain of un 47.0 69 0.0015 21.4 4.9 30 292-321 15-44 (48)
443 KOG3677 RNA polymerase I-assoc 46.7 2.6E+02 0.0057 28.9 10.7 62 174-235 236-299 (525)
444 KOG0530 Protein farnesyltransf 45.9 2.9E+02 0.0062 26.7 13.8 187 630-819 44-238 (318)
445 PF04190 DUF410: Protein of un 45.2 3.1E+02 0.0066 26.8 19.5 25 278-302 89-113 (260)
446 PF13929 mRNA_stabil: mRNA sta 45.2 3.1E+02 0.0068 27.0 17.4 63 311-373 199-262 (292)
447 KOG1308 Hsp70-interacting prot 44.2 35 0.00076 33.9 4.4 88 606-696 126-214 (377)
448 PRK10564 maltose regulon perip 44.0 51 0.0011 32.3 5.4 34 774-807 262-295 (303)
449 PF11848 DUF3368: Domain of un 43.6 98 0.0021 20.7 5.3 27 362-388 15-41 (48)
450 COG5191 Uncharacterized conser 43.4 53 0.0012 32.1 5.3 64 698-762 106-170 (435)
451 PF11846 DUF3366: Domain of un 43.1 74 0.0016 29.4 6.4 33 730-762 140-172 (193)
452 PRK13342 recombination factor 42.9 4.4E+02 0.0095 28.0 19.8 46 352-397 230-278 (413)
453 PF12968 DUF3856: Domain of Un 42.4 2E+02 0.0043 23.9 8.2 62 736-797 57-128 (144)
454 PF11663 Toxin_YhaV: Toxin wit 42.3 22 0.00048 29.8 2.4 34 217-252 104-137 (140)
455 KOG0991 Replication factor C, 42.2 3.1E+02 0.0066 26.0 12.8 18 645-662 254-271 (333)
456 smart00386 HAT HAT (Half-A-TPR 42.1 57 0.0012 18.8 3.8 17 784-800 2-18 (33)
457 PF02184 HAT: HAT (Half-A-TPR) 41.5 63 0.0014 19.4 3.5 25 750-776 3-27 (32)
458 PF07575 Nucleopor_Nup85: Nup8 41.5 1.1E+02 0.0023 34.2 8.5 21 319-339 410-430 (566)
459 KOG0686 COP9 signalosome, subu 41.1 4.3E+02 0.0094 27.4 15.1 62 315-377 151-215 (466)
460 KOG4279 Serine/threonine prote 40.9 5.4E+02 0.012 29.1 12.6 191 611-818 180-393 (1226)
461 PRK10564 maltose regulon perip 40.1 59 0.0013 32.0 5.2 30 317-346 260-289 (303)
462 PHA02875 ankyrin repeat protei 40.0 4.8E+02 0.01 27.6 14.6 48 286-337 106-155 (413)
463 PF15297 CKAP2_C: Cytoskeleton 39.1 3.2E+02 0.007 27.7 10.0 63 716-780 120-186 (353)
464 PF13762 MNE1: Mitochondrial s 39.0 1.7E+02 0.0036 25.4 7.2 85 136-220 42-127 (145)
465 PF11817 Foie-gras_1: Foie gra 38.6 1.7E+02 0.0037 28.4 8.3 57 704-760 183-244 (247)
466 PRK15180 Vi polysaccharide bio 38.4 5.1E+02 0.011 27.4 29.5 120 291-414 301-421 (831)
467 PF14669 Asp_Glu_race_2: Putat 38.2 3.2E+02 0.0068 25.0 14.9 57 388-444 136-206 (233)
468 PF10516 SHNi-TPR: SHNi-TPR; 38.2 55 0.0012 20.6 3.1 28 771-798 3-30 (38)
469 PRK13800 putative oxidoreducta 38.0 7.8E+02 0.017 29.5 29.2 247 522-797 633-880 (897)
470 PF15469 Sec5: Exocyst complex 37.5 3.2E+02 0.0069 24.9 11.7 25 783-807 153-177 (182)
471 KOG0889 Histone acetyltransfer 37.3 1.3E+03 0.029 32.0 28.2 407 361-798 2392-2841(3550)
472 KOG4279 Serine/threonine prote 37.3 6.6E+02 0.014 28.5 16.6 232 541-802 145-399 (1226)
473 PRK07003 DNA polymerase III su 37.2 7.1E+02 0.015 28.8 15.1 135 679-816 179-337 (830)
474 PF04910 Tcf25: Transcriptiona 37.1 5E+02 0.011 26.9 22.0 211 318-537 14-272 (360)
475 PF15297 CKAP2_C: Cytoskeleton 36.7 3.8E+02 0.0083 27.2 10.2 82 666-749 105-190 (353)
476 COG5159 RPN6 26S proteasome re 36.6 4.2E+02 0.009 25.9 22.0 288 390-678 9-333 (421)
477 KOG3779 Homeobox transcription 36.6 1.6E+02 0.0035 30.2 7.6 93 3-95 437-541 (737)
478 PF01213 CAP_N: Adenylate cycl 36.3 12 0.00026 37.3 0.0 21 2-22 227-247 (312)
479 PF08311 Mad3_BUB1_I: Mad3/BUB 36.2 2.6E+02 0.0057 23.5 10.6 95 136-233 29-124 (126)
480 PF08424 NRDE-2: NRDE-2, neces 35.3 4.9E+02 0.011 26.4 18.2 151 541-695 3-185 (321)
481 COG5187 RPN7 26S proteasome re 35.2 4.4E+02 0.0096 25.8 20.7 244 296-551 55-330 (412)
482 cd02680 MIT_calpain7_2 MIT: do 35.1 67 0.0015 24.0 3.7 34 749-798 2-35 (75)
483 PRK13342 recombination factor 34.8 5.8E+02 0.013 27.1 19.8 170 609-797 152-333 (413)
484 KOG0686 COP9 signalosome, subu 33.9 5.6E+02 0.012 26.6 15.2 181 489-672 150-352 (466)
485 COG2178 Predicted RNA-binding 33.6 3.8E+02 0.0083 24.6 10.5 108 646-762 20-149 (204)
486 KOG1922 Rho GTPase effector BN 33.5 1.3E+02 0.0029 35.5 8.0 86 6-94 315-408 (833)
487 KOG0396 Uncharacterized conser 33.3 4.6E+02 0.01 26.7 10.0 117 697-815 114-237 (389)
488 KOG3397 Acetyltransferases [Ge 33.2 58 0.0013 28.5 3.5 51 2-52 158-208 (225)
489 PF13762 MNE1: Mitochondrial s 33.2 3.3E+02 0.0071 23.7 12.4 114 430-571 5-127 (145)
490 PF06957 COPI_C: Coatomer (COP 33.1 1.3E+02 0.0029 31.5 6.8 130 671-817 211-348 (422)
491 PF11663 Toxin_YhaV: Toxin wit 32.9 48 0.001 28.0 2.9 32 326-359 107-138 (140)
492 PHA03211 serine/threonine kina 32.8 50 0.0011 35.6 4.0 49 6-54 22-70 (461)
493 TIGR02710 CRISPR-associated pr 32.8 5.9E+02 0.013 26.5 12.0 130 669-798 135-275 (380)
494 KOG0292 Vesicle coat complex C 32.5 8.6E+02 0.019 28.3 22.7 380 284-717 625-1137(1202)
495 KOG1839 Uncharacterized protei 32.3 5.6E+02 0.012 31.1 12.1 158 287-444 940-1124(1236)
496 smart00777 Mad3_BUB1_I Mad3/BU 31.9 3.1E+02 0.0068 23.1 9.2 75 715-794 49-124 (125)
497 PRK10941 hypothetical protein; 31.8 5.1E+02 0.011 25.5 11.4 85 699-784 181-266 (269)
498 KOG4425 Uncharacterized conser 31.5 50 0.0011 33.9 3.4 48 8-55 60-116 (900)
499 PF09477 Type_III_YscG: Bacter 31.4 2.9E+02 0.0062 22.5 8.4 77 331-414 23-99 (116)
500 PF11768 DUF3312: Protein of u 31.2 5.1E+02 0.011 28.2 10.6 130 355-510 414-544 (545)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.7e-82 Score=729.84 Aligned_cols=653 Identities=19% Similarity=0.318 Sum_probs=618.5
Q ss_pred ccHHHHHHhhcCCCChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 003449 134 ADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTS 213 (819)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 213 (819)
.....++..+++.|+++.|+.+|+.+.+. +...+..+|..++..|.+.+.++.+.+++..+.+.+..++..+++.
T Consensus 52 ~~~n~~i~~l~~~g~~~~A~~l~~~m~~~-----g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 52 HDSNSQLRALCSHGQLEQALKLLESMQEL-----RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 34567788888999999999999999772 2345677899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 003449 214 LITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGS 293 (819)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g 293 (819)
|+.+|++.|+++.|..+|++|. .||.++||.+|.+|++.| ++++|.++|++|...|+.||..||+.++.+|+..+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g-~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAG-YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 9999999999999999999996 469999999999999999 89999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 003449 294 LHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKT 373 (819)
Q Consensus 294 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 373 (819)
+++.+.+++..|.+.|+.||..+||+|+.+|++.|++++|.++|++| ..+|.++||++|.+|++.|++++|+++|.
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m----~~~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC----CCCCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 45799999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 003449 374 QMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPD 453 (819)
Q Consensus 374 ~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 453 (819)
+|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++++.+|++.|++++|.++|++|. .||
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d 353 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKD 353 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 578
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003449 454 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAA 533 (819)
Q Consensus 454 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 533 (819)
..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.++..+|+.++.+
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHH
Q 003449 534 LARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDT 613 (819)
Q Consensus 534 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 613 (819)
|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+.+|++|.. ++.|+..++..++.+|++.|+++.+
T Consensus 434 y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~ 508 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCG 508 (857)
T ss_pred HHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHh
Confidence 9999999999999999974 5788999999999999999999999999986 4899999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003449 614 ERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK 693 (819)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 693 (819)
.+++..+.+.|+.++..+++.|+++|++.|++++|.++|+.+ .+|..+|++++.+|++.|+.++|.++|++|.+.
T Consensus 509 ~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~ 583 (857)
T PLN03077 509 KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583 (857)
T ss_pred HHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999987 589999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003449 694 GIKPDIISYNTVIFAYCRNGRMKEASRIFSEMR-DSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTY 772 (819)
Q Consensus 694 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 772 (819)
|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++.+|++.|++++|.+++++|. +.||..+|
T Consensus 584 g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~ 660 (857)
T PLN03077 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVW 660 (857)
T ss_pred CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHH
Confidence 999999999999999999999999999999999 67999999999999999999999999999999983 78999999
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh--hc
Q 003449 773 NSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAK--KW 818 (819)
Q Consensus 773 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~~--~~ 818 (819)
..|+.+|...|+.+.|....+++.+++|++. ..|..|...+++ +|
T Consensus 661 ~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~-~~y~ll~n~ya~~g~~ 707 (857)
T PLN03077 661 GALLNACRIHRHVELGELAAQHIFELDPNSV-GYYILLCNLYADAGKW 707 (857)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCc-chHHHHHHHHHHCCCh
Confidence 9999999999999999999999999999874 455666655543 55
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.5e-79 Score=705.21 Aligned_cols=639 Identities=19% Similarity=0.248 Sum_probs=607.2
Q ss_pred CccccHHHHHHhhcCCCChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH
Q 003449 131 DLGADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYA 210 (819)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 210 (819)
.....+..+++.+...+..+.|..++..+... ....+..+++.++..|++.|+++.|.++|++|.+ +|..+
T Consensus 84 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~ 154 (857)
T PLN03077 84 VDEDAYVALFRLCEWKRAVEEGSRVCSRALSS-----HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFS 154 (857)
T ss_pred CChhHHHHHHHHHhhCCCHHHHHHHHHHHHHc-----CCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeE
Confidence 34445777888888889999999999988762 2235677899999999999999999999999975 48899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003449 211 YTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCR 290 (819)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~ 290 (819)
|+.+|.+|++.|++++|..+|++|...|+.||..||+.++.+|++.+ ++..+.+++..|.+.|+.||..+|+.|+.+|+
T Consensus 155 ~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~ 233 (857)
T PLN03077 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP-DLARGREVHAHVVRFGFELDVDVVNALITMYV 233 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc-chhhHHHHHHHHHHcCCCcccchHhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 003449 291 RGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAME 370 (819)
Q Consensus 291 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 370 (819)
+.|++++|.++|++|.. +|..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+.+.|.+
T Consensus 234 k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 234 KCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred cCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 99999999999999963 68899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 003449 371 LKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNC 450 (819)
Q Consensus 371 ~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 450 (819)
++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999964 6889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003449 451 KPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAV 530 (819)
Q Consensus 451 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 530 (819)
.||..+|+.++.+|++.|+.++|.++++.|.+.|+.|+..+++.|+++|++.|++++|.++|++|.+ +|..+|+.+
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~m 461 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSI 461 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999976 488899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCH
Q 003449 531 LAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLL 610 (819)
Q Consensus 531 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 610 (819)
+.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|..++..+++.++++|+++|++
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 9999999999999999999986 589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003449 611 MDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREI 690 (819)
Q Consensus 611 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 690 (819)
++|..+|+.+ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|
T Consensus 541 ~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 541 NYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred HHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 9999999987 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-C
Q 003449 691 L-AKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-N 768 (819)
Q Consensus 691 ~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~ 768 (819)
. +.|+.|+..+|+.++++|++.|++++|.+++++|. +.||..+|..++.+|...|+.+.|....+++.+ +.| +
T Consensus 616 ~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~ 690 (857)
T PLN03077 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNS 690 (857)
T ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCC
Confidence 9 78999999999999999999999999999999984 799999999999999999999999999999998 577 6
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCC
Q 003449 769 QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 769 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
...|..+.+.|...|+|++|.++.+.|.+.+...
T Consensus 691 ~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k 724 (857)
T PLN03077 691 VGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724 (857)
T ss_pred cchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Confidence 7788899999999999999999999999876553
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.8e-69 Score=604.55 Aligned_cols=546 Identities=18% Similarity=0.278 Sum_probs=500.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003449 205 DIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGC-KPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFN 283 (819)
Q Consensus 205 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~ 283 (819)
..+...|..++..|++.|++++|+++|++|.+.|+ .++..+++.++.+|++.| ..++|..+++.|.. ||..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g-~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQR-AVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCC-CHHHHHHHHHHcCC----CCHHHHH
Confidence 45678899999999999999999999999999986 467888889999999999 89999999999974 8999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcC
Q 003449 284 TLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDG 363 (819)
Q Consensus 284 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 363 (819)
.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 003449 364 LLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRS--AGCKPNICTFNALIKMHGNRGNFVEMMKV 441 (819)
Q Consensus 364 ~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 441 (819)
++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 67899999999999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003449 442 FDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVT 521 (819)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 521 (819)
|++|.+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003449 522 PDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLI 601 (819)
Q Consensus 522 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 601 (819)
|+..+|+.++.+|++.|++++|.++|++|.+.++.||..+|+.++.+|++.|++++|.+++++|...++.|+..+|..++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003449 602 LVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFA 681 (819)
Q Consensus 602 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 681 (819)
.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ ++++|.++.+.+.... + +......+..+
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~--~--------g~~~~~n~w~~ 829 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFD--S--------GRPQIENKWTS 829 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhh--c--------cccccccchHH
Confidence 9999999999999999999999999999999999876542 4666666554443211 0 11111223346
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003449 682 RAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMI 761 (819)
Q Consensus 682 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 761 (819)
+|..+|++|.+.|+.||..+|+.++.+++..+..+.+..+++.|...+..|+..+|+.++.++++. .++|..++++|.
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 799999999999999999999999988888888999999998888888888889999999987432 368999999999
Q ss_pred HcCCCCCH
Q 003449 762 KQGCKPNQ 769 (819)
Q Consensus 762 ~~g~~p~~ 769 (819)
+.|+.|+.
T Consensus 908 ~~Gi~p~~ 915 (1060)
T PLN03218 908 SLGVVPSV 915 (1060)
T ss_pred HcCCCCCc
Confidence 99999875
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.8e-69 Score=602.06 Aligned_cols=545 Identities=20% Similarity=0.301 Sum_probs=505.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003449 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGF-DIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVIL 250 (819)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 250 (819)
+...|..++..|++.|++++|.++|++|.+.|+ .++...++.++..|++.|..++|..+|+.|.. ||..+|+.++
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL 444 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLM 444 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHH
Confidence 345677888888999999999999999999886 46777888999999999999999999999974 8999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCH
Q 003449 251 NVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRP 330 (819)
Q Consensus 251 ~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 330 (819)
.+|++.| +++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 445 ~a~~k~g-~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 445 SVCASSQ-DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 9999999 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003449 331 KEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVE--IGITPDVFTYTTLLSGFEKAGKDESAMKVFE 408 (819)
Q Consensus 331 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~ 408 (819)
++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ .|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987 6789999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003449 409 EMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPE 488 (819)
Q Consensus 409 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 488 (819)
+|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.++|.+++++|.+.|+.|+
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003449 489 RDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHA 568 (819)
Q Consensus 489 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 568 (819)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003449 569 YANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKT 648 (819)
Q Consensus 569 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 648 (819)
|++.|++++|..++.+|.+.|+.|+..+++.++..|. +.+++|....+.+... +. .......+..++|
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f---------~~-g~~~~~n~w~~~A 831 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSF---------DS-GRPQIENKWTSWA 831 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhh---------hc-cccccccchHHHH
Confidence 9999999999999999999999999999999986654 2455655554443321 10 1111122345779
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003449 649 NEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS 728 (819)
Q Consensus 649 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 728 (819)
..+|++|.+.|+.||..+|+.++.++++.+..+.+..+++.|...+..|+..+|+.+++++++. .++|..++++|.+.
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 9999999999999999999999998889999999999999998888889999999999998532 47899999999999
Q ss_pred CCCCCHH
Q 003449 729 GLVPDVI 735 (819)
Q Consensus 729 g~~p~~~ 735 (819)
|+.|+..
T Consensus 910 Gi~p~~~ 916 (1060)
T PLN03218 910 GVVPSVS 916 (1060)
T ss_pred CCCCCcc
Confidence 9999874
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.3e-64 Score=563.93 Aligned_cols=472 Identities=22% Similarity=0.347 Sum_probs=443.4
Q ss_pred ccHHHHHHhhcCCCChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 003449 134 ADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTS 213 (819)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 213 (819)
..+..++..+...|+++.|+++|.+|.. .....++..+|+.++.+|++.++++.|.+++..|.+.|+.+|..+|+.
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~----~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEA----GCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3577888999999999999999999976 122346889999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 003449 214 LITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGS 293 (819)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g 293 (819)
|+++|++.|++++|..+|++|. .||.++||.++.+|++.| ++++|.++|++|.+.|+.|+..||+.++.+|++.|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g-~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAG-NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCc-CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 9999999999999999999996 479999999999999999 89999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 003449 294 LHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKT 373 (819)
Q Consensus 294 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 373 (819)
..+.+.+++..+.+.|+.+|..+||+|+.+|+++|++++|.++|++| ..+|.++||.||.+|++.|++++|+++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m----~~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM----PEKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC----CCCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 45699999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 003449 374 QMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPD 453 (819)
Q Consensus 374 ~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 453 (819)
+|.+.|+.||..||+.++.+|++.|++++|.+++++|.+.|+.+|..+|++|+++|++.|++++|.++|++|. .+|
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 479
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 003449 454 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLE-AGVTPDLSTYNAVLA 532 (819)
Q Consensus 454 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~ 532 (819)
..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 599999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHH
Q 003449 533 ALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMD 612 (819)
Q Consensus 533 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 612 (819)
+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++.+.. +.+...|..+++.|++.|++++
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHH
Confidence 999999999999999876 468999999999999999999999999999987643 3345677788888888888888
Q ss_pred HHHHHHHHHHCCCC
Q 003449 613 TERAFLELKKKGFS 626 (819)
Q Consensus 613 a~~~~~~~~~~~~~ 626 (819)
|.++++.|.+.|+.
T Consensus 547 A~~v~~~m~~~g~~ 560 (697)
T PLN03081 547 AAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHHHHcCCc
Confidence 88888888877764
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.3e-62 Score=546.62 Aligned_cols=513 Identities=19% Similarity=0.319 Sum_probs=421.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003449 206 IDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTL 285 (819)
Q Consensus 206 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~l 285 (819)
.+...|+.+|..|.+.|++++|..+|+.|...+ ++.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~-----------------------------------~~~~~~~t~~~l 129 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGC-----------------------------------PFTLPASTYDAL 129 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcC-----------------------------------CCCCCHHHHHHH
Confidence 345567777777777777777777777666542 134455555555
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCH
Q 003449 286 ISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLL 365 (819)
Q Consensus 286 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 365 (819)
+.+|++.++.+.|.+++..|.+.|+.||..+||.|+.+|++.|++++|.++|++| ..||.++|+.+|.+|++.|++
T Consensus 130 l~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m----~~~~~~t~n~li~~~~~~g~~ 205 (697)
T PLN03081 130 VEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM----PERNLASWGTIIGGLVDAGNY 205 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcC----CCCCeeeHHHHHHHHHHCcCH
Confidence 5555555666777777777777788888888888888888888888888888888 347888888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003449 366 EEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEI 445 (819)
Q Consensus 366 ~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 445 (819)
++|+++|++|.+.|+.||..+|+.++.+|+..|+.+.+.+++..+.+.|+.+|..+|++|+.+|++.|++++|.++|++|
T Consensus 206 ~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m 285 (697)
T PLN03081 206 REAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM 285 (697)
T ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 003449 446 NKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLS 525 (819)
Q Consensus 446 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 525 (819)
. .+|+.+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.+|..
T Consensus 286 ~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~ 361 (697)
T PLN03081 286 P----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361 (697)
T ss_pred C----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee
Confidence 6 468888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 003449 526 TYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYS 605 (819)
Q Consensus 526 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 605 (819)
+|+.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+++|++|.+.|+.|+..+|..++.+|+
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 437 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 888999989888999999998888863 6788889999999999999999999998888888889888999999999
Q ss_pred cCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003449 606 KSDLLMDTERAFLELKK-KGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAE 684 (819)
Q Consensus 606 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 684 (819)
+.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++++.+|...|+++.|.
T Consensus 438 ~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~ 514 (697)
T PLN03081 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGR 514 (697)
T ss_pred cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999975 689999999999999999999999999998875 56899999999999999999999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH-------HHHHH----hcCChH
Q 003449 685 DVLREILAKGIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI-TYNTF-------VASYA----ADSLFV 751 (819)
Q Consensus 685 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l-------~~~~~----~~g~~~ 751 (819)
.+++++.+. .| +..+|..|+++|++.|++++|.+++++|.+.|+...+. +|..+ +..-. ...-++
T Consensus 515 ~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~ 592 (697)
T PLN03081 515 LAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQ 592 (697)
T ss_pred HHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHH
Confidence 999999764 44 47899999999999999999999999999998753321 22111 00000 011245
Q ss_pred HHHHHHHHHHHcCCCCCHH
Q 003449 752 EALDVVRYMIKQGCKPNQN 770 (819)
Q Consensus 752 ~A~~~~~~~~~~g~~p~~~ 770 (819)
...++.++|.+.|+.||..
T Consensus 593 ~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 593 KLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHHHHcCCCCCcc
Confidence 6667888888899999743
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.8e-37 Score=369.06 Aligned_cols=612 Identities=13% Similarity=0.072 Sum_probs=463.7
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHH
Q 003449 183 LGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNK 262 (819)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~ 262 (819)
+...|++++|...++.+.+.+.. ....+..+..++...|++++|...|+++.+.. +.+...+..+...+.+.| ++++
T Consensus 271 ~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g-~~~~ 347 (899)
T TIGR02917 271 DFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLG-RVDE 347 (899)
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCC-CHHH
Confidence 33455555555555555444322 22333444555666666666666666666553 224555666666677777 6777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 003449 263 IMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKI 342 (819)
Q Consensus 263 a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 342 (819)
|...++++.... ..+...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 348 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 425 (899)
T TIGR02917 348 AIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQ 425 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 777777776544 2356667777777777777777777777776653 23455666677777777777777777777766
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003449 343 NGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTF 422 (819)
Q Consensus 343 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 422 (819)
... ........++..+.+.|++++|.++++++... .+.+..++..+...+...|++++|.+.|+++.+.. +.+...+
T Consensus 426 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 502 (899)
T TIGR02917 426 LDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAA 502 (899)
T ss_pred hCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHH
Confidence 532 23445556677777788888888888877764 34466678888888888888888888888887653 3356677
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003449 423 NALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRC 502 (819)
Q Consensus 423 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 502 (819)
..++..+...|++++|.+.|+++...+ +.+..++..+...+.+.|+.++|...++++.+.+. .+...+..++..+...
T Consensus 503 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 580 (899)
T TIGR02917 503 ANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGK 580 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHC
Confidence 778888888888888888888887654 45677888888888888888999888888877643 3566777888888889
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 003449 503 GSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALS 582 (819)
Q Consensus 503 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 582 (819)
|++++|.++++.+.+... .+...|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...+
T Consensus 581 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 581 GQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred CCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999988877543 367888888889999999999999999887653 445667888888888899999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 003449 583 EEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTP 662 (819)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 662 (819)
+++.+.. +.+...+..++..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.+.++.+...+ |
T Consensus 659 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~ 734 (899)
T TIGR02917 659 KRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--P 734 (899)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--C
Confidence 9888754 5567788888888999999999999999888765 3466778888888899999999999999988764 5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003449 663 SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVA 742 (819)
Q Consensus 663 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 742 (819)
+..++..++.++.+.|++++|.+.++++.+.. +.+...+..++..|...|++++|..+|+++.+.+ ..+..++..++.
T Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~ 812 (899)
T TIGR02917 735 SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAW 812 (899)
T ss_pred CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 55777788889999999999999999998764 4468888899999999999999999999998864 346778889999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Q 003449 743 SYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAK 816 (819)
Q Consensus 743 ~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~~ 816 (819)
.+...|+ .+|+.+++++.+. .| +..++..++..+...|++++|..+++++++.+|.+ ...+..+...+.+
T Consensus 813 ~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~ 883 (899)
T TIGR02917 813 LYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA-AAIRYHLALALLA 883 (899)
T ss_pred HHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHH
Confidence 9999999 8899999999884 45 67788899999999999999999999999999985 4555555555543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.6e-37 Score=369.46 Aligned_cols=627 Identities=13% Similarity=0.050 Sum_probs=539.3
Q ss_pred CCCChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 003449 145 FHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRY 224 (819)
Q Consensus 145 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 224 (819)
..|+++.|+..|..+.+. ++. ....+..+..++...|+++.|...++.+.+... .+...+..+...+.+.|++
T Consensus 273 ~~~~~~~A~~~~~~~l~~---~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~ 345 (899)
T TIGR02917 273 QKKNYEDARETLQDALKS---APE---YLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRV 345 (899)
T ss_pred HhcCHHHHHHHHHHHHHh---CCC---chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCH
Confidence 456777777777766551 111 223344556677889999999999999887644 3677888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003449 225 REAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEE 304 (819)
Q Consensus 225 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 304 (819)
++|...++++.+.. +.+...+..+...+.+.| ++++|.++|+++.+... .+...+..+...+...|++++|.+.++.
T Consensus 346 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 422 (899)
T TIGR02917 346 DEAIATLSPALGLD-PDDPAALSLLGEAYLALG-DFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLET 422 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 99999999998774 347888999999999999 89999999999988653 3567788888899999999999999999
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 003449 305 MKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDV 384 (819)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 384 (819)
+.+... ........++..+.+.|++++|..+++++... .+.+..+|..+...|...|++++|.+.|+++.+.. +.+.
T Consensus 423 a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 499 (899)
T TIGR02917 423 AAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFF 499 (899)
T ss_pred HHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcH
Confidence 988743 24456677888999999999999999999876 45578899999999999999999999999998864 3356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003449 385 FTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVF 464 (819)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 464 (819)
..+..+...+...|++++|.+.++++...+ +.+..++..+...+...|+.++|...++++...+ +.+...+..++..+
T Consensus 500 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 577 (899)
T TIGR02917 500 PAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYY 577 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHH
Confidence 678888999999999999999999998764 3477889999999999999999999999998765 55678888999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003449 465 GQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSE 544 (819)
Q Consensus 465 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 544 (819)
...|++++|..+++.+.+.. +.+...+..++..+...|++++|...|+.+.+.... +...+..+...+.+.|++++|.
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998764 447788999999999999999999999999886533 6778889999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Q 003449 545 KIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKG 624 (819)
Q Consensus 545 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 624 (819)
..|+++.+.. +.+..++..++..+...|++++|..+++.+.... +.+...+..++..+...|++++|...|+.+...+
T Consensus 656 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 656 TSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 9999998763 4567889999999999999999999999998875 5667788889999999999999999999999874
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003449 625 FSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNT 704 (819)
Q Consensus 625 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 704 (819)
|+..++..++..+.+.|++++|.+.++.+.+.. +.+...+..++..|...|++++|..+|+++.+.. +.+...++.
T Consensus 734 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 809 (899)
T TIGR02917 734 --PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNN 809 (899)
T ss_pred --CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 445777888999999999999999999999864 6678889999999999999999999999999874 457889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc
Q 003449 705 VIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQ 784 (819)
Q Consensus 705 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 784 (819)
++..+...|+ ++|+.+++++.+.. .-+...+..++..+...|++++|..+++++++.+. .+..++..++.++.+.|+
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGR 886 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCC
Confidence 9999999999 88999999998852 22456778899999999999999999999999642 288999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 003449 785 RYEAITFVNNLSK 797 (819)
Q Consensus 785 ~~~A~~~~~~~~~ 797 (819)
.++|.+.++++++
T Consensus 887 ~~~A~~~~~~~~~ 899 (899)
T TIGR02917 887 KAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999864
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.4e-28 Score=288.71 Aligned_cols=637 Identities=15% Similarity=0.082 Sum_probs=474.5
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH-----
Q 003449 136 LLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYA----- 210 (819)
Q Consensus 136 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----- 210 (819)
+..-++-....++.+.|.+.+..+.. .+++ ++.++..++.++.+.|+.++|.+.++.+.+..+. +...
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~---~~p~---~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~ 103 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLEL---IDPN---NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRT 103 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHc---cCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHH
Confidence 55555666667899999999998876 2333 6778889999999999999999999999887544 3222
Q ss_pred -----------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC
Q 003449 211 -----------YTSLITTYASNGRYREAVMVFKKMEEEGCKPTLI-TYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPD 278 (819)
Q Consensus 211 -----------~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~ 278 (819)
...+.+.+.+.|++++|+..|+++.+.+.. +.. ....+.......| ++++|.+.++++.+.... +
T Consensus 104 ~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g-~~~~A~~~L~~ll~~~P~-~ 180 (1157)
T PRK11447 104 TMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPA-QRPEAINQLQRLNADYPG-N 180 (1157)
T ss_pred HHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCc-cHHHHHHHHHHHHHhCCC-C
Confidence 234456788999999999999999876433 322 1111122222346 899999999999987533 6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-------------------HHhHHHHHHHHHhCCCHHHHHHHHHH
Q 003449 279 SYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPD-------------------KVTYNALLDVYGKCRRPKEAMQVLRE 339 (819)
Q Consensus 279 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------------~~~~~~l~~~~~~~g~~~~A~~~~~~ 339 (819)
...+..+...+...|+.++|.+.++++........ ...+...+..+-.....+.|...+.+
T Consensus 181 ~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~ 260 (1157)
T PRK11447 181 TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAE 260 (1157)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 67788888999999999999999999876421100 00111112222222234556666655
Q ss_pred HHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C
Q 003449 340 MKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKP-N 418 (819)
Q Consensus 340 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~ 418 (819)
+......|.... ......+...|++++|+..|++.++.. +.+...+..+...+.+.|++++|+..|++..+..... .
T Consensus 261 ~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~ 338 (1157)
T PRK11447 261 QQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN 338 (1157)
T ss_pred HHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc
Confidence 544322333221 234567788999999999999999863 3367788999999999999999999999998764221 1
Q ss_pred HHHH------------HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003449 419 ICTF------------NALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFI 486 (819)
Q Consensus 419 ~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 486 (819)
...+ ......+.+.|++++|++.|+++.... +.+...+..+...+...|++++|++.|+++.+....
T Consensus 339 ~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 339 RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 1111 223456778999999999999998874 456778888999999999999999999999986432
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003449 487 PERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVT--------PDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPN 558 (819)
Q Consensus 487 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 558 (819)
+...+..+...+. .++.++|..+++.+...... .....+..+...+...|++++|++.|++..+.. +-+
T Consensus 418 -~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~ 494 (1157)
T PRK11447 418 -NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGS 494 (1157)
T ss_pred -CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 4566666777664 46789999888765432100 012345566778889999999999999998863 335
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHH--------
Q 003449 559 ELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIP-------- 630 (819)
Q Consensus 559 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------- 630 (819)
...+..+...|...|++++|...+++++... +.+...+..+...+...++.++|...++.+......++..
T Consensus 495 ~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~ 573 (1157)
T PRK11447 495 VWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQS 573 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhh
Confidence 6677888899999999999999999998754 4455556666667788999999999998875432222221
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003449 631 -TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAY 709 (819)
Q Consensus 631 -~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 709 (819)
.+..++..+...|+.++|.++++. .+.+...+..+...+.+.|++++|++.|+++++.. +.+...+..++..|
T Consensus 574 ~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~ 647 (1157)
T PRK11447 574 DQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVD 647 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 233456778899999999999872 25566778889999999999999999999999864 33688999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C---CHHHHHHHHHHHHhcC
Q 003449 710 CRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCK--P---NQNTYNSIVDGYCKLN 783 (819)
Q Consensus 710 ~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--p---~~~~~~~l~~~~~~~g 783 (819)
...|++++|++.++++.+. .| +...+..++.++...|++++|..+++++++..-. | +..++..++..+...|
T Consensus 648 ~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G 725 (1157)
T PRK11447 648 IAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTG 725 (1157)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcC
Confidence 9999999999999988874 44 4456778889999999999999999999874211 1 2356777899999999
Q ss_pred cHHHHHHHHHHhhh
Q 003449 784 QRYEAITFVNNLSK 797 (819)
Q Consensus 784 ~~~~A~~~~~~~~~ 797 (819)
+.++|+..++++..
T Consensus 726 ~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 726 QPQQALETYKDAMV 739 (1157)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999975
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4.6e-27 Score=277.89 Aligned_cols=609 Identities=10% Similarity=0.026 Sum_probs=455.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH---------
Q 003449 176 IAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITY--------- 246 (819)
Q Consensus 176 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--------- 246 (819)
+-..++.....++.+.|.+.+.++...... ++.++..++..+.+.|+.++|...+++..+..+. +....
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhc
Confidence 444566677889999999999998877554 7889999999999999999999999999987533 22221
Q ss_pred -------HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 003449 247 -------NVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNA 319 (819)
Q Consensus 247 -------~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 319 (819)
......+.+.| ++++|++.|+++.+.+..........+.......|+.++|.+.++++.+.. +.+...+..
T Consensus 109 ~~~~~~~l~~A~ll~~~g-~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~ 186 (1157)
T PRK11447 109 TPEGRQALQQARLLATTG-RTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNT 186 (1157)
T ss_pred CCchhhHHHHHHHHHhCC-CHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 23344677888 899999999999876433222222222222335699999999999999884 446777889
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HhhH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003449 320 LLDVYGKCRRPKEAMQVLREMKINGCLPS--IVTY-----------------NSLISAYARDGLLEEAMELKTQMVEIGI 380 (819)
Q Consensus 320 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~ 380 (819)
+...+...|+.++|+..++++........ ...| ...+..+-.....+.|...+.++.....
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999865421100 0111 1111111122234556666666554433
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC-CHHHHH-
Q 003449 381 TPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKP-DIVTWN- 458 (819)
Q Consensus 381 ~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~- 458 (819)
.|+... ......+...|++++|+..|++.++.. +.+..++..+...+.+.|++++|+..|++..+..... ....|.
T Consensus 267 dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 267 DPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred CcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 333322 233566778999999999999999864 3378889999999999999999999999998763221 112222
Q ss_pred -----------HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 003449 459 -----------TLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTY 527 (819)
Q Consensus 459 -----------~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 527 (819)
.....+.+.|++++|...|+++.+... .+...+..+...+...|++++|++.|+++.+.... +...+
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~ 422 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAV 422 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 224467789999999999999998743 35667888999999999999999999999986443 55667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC--------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003449 528 NAVLAALARGGMWEQSEKIFAEMKGGRC--------KPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKT 599 (819)
Q Consensus 528 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 599 (819)
..+...+. .++.++|+.+++.+..... ......+..+...+...|++++|+..+++.++.. +.+...+..
T Consensus 423 ~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~ 500 (1157)
T PRK11447 423 RGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYR 500 (1157)
T ss_pred HHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 77777664 5678999998876543210 0112234556777889999999999999999875 456778888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH---------HHHHH
Q 003449 600 LILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLT---------TYNTL 670 (819)
Q Consensus 600 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~---------~~~~l 670 (819)
++..|.+.|++++|...++++.+... .+...+..+...+...++.++|+..++.+......++.. .+..+
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 99999999999999999999987642 355555556666778999999999998865432222221 12345
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 003449 671 MYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSL 749 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 749 (819)
...+...|+.++|+++++. .+.+...+..+...+.+.|++++|++.|+++.+. .| +...+..++..|...|+
T Consensus 580 a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGD 652 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 6778899999999999872 2446677788999999999999999999999985 34 56788999999999999
Q ss_pred hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCH
Q 003449 750 FVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 750 ~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
+++|+..++.+.+ ..| +..++..++.++...|++++|...++++.+..|+++.
T Consensus 653 ~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 653 LAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 9999999999887 355 5677888999999999999999999999998876554
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=2.5e-24 Score=241.85 Aligned_cols=610 Identities=10% Similarity=0.013 Sum_probs=415.6
Q ss_pred CCCChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 003449 145 FHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRY 224 (819)
Q Consensus 145 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 224 (819)
..|+++.|+..|+.+.+ .+|+ +..++..+..++.+.|++++|+..+++..+..+ .|...+..+.. + +++
T Consensus 56 ~~Gd~~~A~~~l~~Al~---~dP~---n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~La~-i---~~~ 124 (987)
T PRK09782 56 KNNDEATAIREFEYIHQ---QVPD---NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSLAA-I---PVE 124 (987)
T ss_pred hCCCHHHHHHHHHHHHH---hCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHHHH-h---ccC
Confidence 34889999999998877 3333 467788999999999999999999999888754 35555554422 2 888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--------HHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHcCCCH
Q 003449 225 REAVMVFKKMEEEGCKPTLITYNVILNV--------YGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTL-ISCCRRGSLH 295 (819)
Q Consensus 225 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~--------~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~l-l~~~~~~g~~ 295 (819)
.+|..+++++.+..+. +...+..+... |.+ +++|.+.++ .......|+..+.... ...|.+.|++
T Consensus 125 ~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q----~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 125 VKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQ----LPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred hhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhh----HHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 9999999999987433 34444444443 443 566666666 4444455556655555 8889999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh-CCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 003449 296 EEAAGVFEEMKLAGFSPDKVTYNALLDVYGK-CRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQ 374 (819)
Q Consensus 296 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 374 (819)
++|++++.++.+.+ +.+......|...|.. .++ +++..+++.. ...+...+..++..|.+.|+.++|.+++++
T Consensus 199 ~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 199 SQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999999986 3355557777778887 466 7888886542 335788888999999999999999999998
Q ss_pred HHHcCCC-CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003449 375 MVEIGIT-PDVFTYTTLLSGFEKAGKDE-SAMKVFEEMRSAGCKPN-ICTFNALIKMHGNRGNFVEMMKVFDEINKCNCK 451 (819)
Q Consensus 375 m~~~g~~-pd~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 451 (819)
+...-.. |+..++.-+ +.+.+... .|..-|.+ + ..++ ......++..+.+.++++.+.++.. +.
T Consensus 273 ~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 339 (987)
T PRK09782 273 NKPLFTTDAQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLLA------TL 339 (987)
T ss_pred CcccccCCCccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CC
Confidence 8765332 444443322 33444332 11111111 0 0111 1223344677777788776665522 13
Q ss_pred CCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHH
Q 003449 452 PDIVTWNTLLAV--FGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA--GVTPDLSTY 527 (819)
Q Consensus 452 ~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 527 (819)
|.... ..++. ....+...++...++.|.+... -+......+.-.....|+.++|..+|+..... +...+....
T Consensus 340 ~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 416 (987)
T PRK09782 340 PANEM--LEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLM 416 (987)
T ss_pred CcchH--HHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHH
Confidence 33332 12222 2234566666666666666522 24455555555566778888888888877762 122234445
Q ss_pred HHHHHHHHhcCC---HHHHHHH-------------------------HHHHHhCCCCC--CHHHHHHHHHHHHccCCHHH
Q 003449 528 NAVLAALARGGM---WEQSEKI-------------------------FAEMKGGRCKP--NELTYSSLLHAYANGREIDQ 577 (819)
Q Consensus 528 ~~l~~~~~~~g~---~~~A~~~-------------------------~~~m~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 577 (819)
..++..|.+.+. ..++..+ +...... .++ +...|..+..++.. ++.++
T Consensus 417 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~e 494 (987)
T PRK09782 417 ARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGV 494 (987)
T ss_pred HHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHH
Confidence 566666666554 2222222 2222221 123 56677777777766 78888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 003449 578 MLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMND 657 (819)
Q Consensus 578 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 657 (819)
|+..+.+..... |+......++..+...|++++|...|+++... .|+...+..+...+.+.|+.++|...++...+
T Consensus 495 Ai~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~ 570 (987)
T PRK09782 495 ALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ 570 (987)
T ss_pred HHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999888877654 44444444556667899999999999987654 34445566777788889999999999998887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHH
Q 003449 658 SGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVIT 736 (819)
Q Consensus 658 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~ 736 (819)
.. +.+...+..+.....+.|++++|...+++.++. .|+...|..+..++.+.|++++|...+++..+. .| +...
T Consensus 571 l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a 645 (987)
T PRK09782 571 RG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNY 645 (987)
T ss_pred cC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 64 333333444444555669999999999999875 467888888999999999999999999999884 44 4457
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHH
Q 003449 737 YNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 737 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
+..++.++...|++++|+..++++++ ..| +...+..++.++...|++++|...+++++++.|+...+.
T Consensus 646 ~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 646 QAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 78888889999999999999999988 466 678888999999999999999999999999999886654
No 12
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2e-23 Score=217.80 Aligned_cols=663 Identities=13% Similarity=0.075 Sum_probs=470.0
Q ss_pred ccHHHHHHhhcCCCChHHHHHHHHHHhhcccCCCCccc-h-HHHHHHHHHHHHhcC-----------ChHHHHHHHHHHh
Q 003449 134 ADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVL-R-GSVIAVLISMLGKEG-----------KVSVAASLLHGLH 200 (819)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~-----------~~~~a~~~~~~~~ 200 (819)
..++.+...+..+|+.++.+.+++.....+........ + ..++..+...++..+ .+..|.-+|+...
T Consensus 42 e~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ 121 (1018)
T KOG2002|consen 42 EAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLAD 121 (1018)
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHH
Confidence 45677888999999999999988876521111111000 1 112222222221111 1333444444332
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CC
Q 003449 201 KDGFDIDVYAYTSLITTYASNGR--YREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAG--VK 276 (819)
Q Consensus 201 ~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g--~~ 276 (819)
+.....+...+..- ..|...|. ++.|...|..+.+.. ++++..+-.=.......+ ++..|+.+|....... ..
T Consensus 122 ki~m~~~~~l~~~~-~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkk-dY~~al~yyk~al~inp~~~ 198 (1018)
T KOG2002|consen 122 KIDMYEDSHLLVQR-GFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKK-DYRGALKYYKKALRINPACK 198 (1018)
T ss_pred HhhccCcchhhhhh-hhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccc-cHHHHHHHHHHHHhcCcccC
Confidence 22111111111111 11223333 689999999998873 223333222222223334 8999999999976543 33
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhC---CCHHHHHHHHHHHHHCCCCCCHhhHH
Q 003449 277 PDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKC---RRPKEAMQVLREMKINGCLPSIVTYN 353 (819)
Q Consensus 277 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~ 353 (819)
||.. ..+..++.+.|+.+.|...|+...+.+. .++.++-.|...-... ..+..+..++...-.. ..-+.+..+
T Consensus 199 aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~-n~~nP~~l~ 274 (1018)
T KOG2002|consen 199 ADVR--IGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE-NNENPVALN 274 (1018)
T ss_pred CCcc--chhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh-cCCCcHHHH
Confidence 4432 2334567789999999999999998842 2344444443322222 3456677777776655 334788899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003449 354 SLISAYARDGLLEEAMELKTQMVEIGIT--PDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGN 431 (819)
Q Consensus 354 ~li~~~~~~g~~~~A~~~~~~m~~~g~~--pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 431 (819)
.|.+.|...|+++.+.++...+...... .-...|-.+.++|-..|++++|...|.+..+..-.--...+..+..+|.+
T Consensus 275 ~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~ 354 (1018)
T KOG2002|consen 275 HLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK 354 (1018)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHH
Confidence 9999999999999999999998875311 11235778899999999999999999998876422224556678899999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 003449 432 RGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNG----MDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQ 507 (819)
Q Consensus 432 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 507 (819)
.|+++.+...|+.+.+.. +-+..+...|...|...+ ..+.|..++.+..+.. +.|...|..+...+... +...
T Consensus 355 ~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~ 431 (1018)
T KOG2002|consen 355 RGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWA 431 (1018)
T ss_pred hchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHH
Confidence 999999999999998874 445777788888887775 4567777777776654 34777888887777654 4444
Q ss_pred HHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC------CCHHHHHHHHHHHHccCC
Q 003449 508 AMSIYKRML----EAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGG---RCK------PNELTYSSLLHAYANGRE 574 (819)
Q Consensus 508 A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~------~~~~~~~~l~~~~~~~~~ 574 (819)
++.+|..+. ..+..+..+..|.+...+...|++++|...|...... ... ++..+-..+..++-..++
T Consensus 432 sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~ 511 (1018)
T KOG2002|consen 432 SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHD 511 (1018)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhh
Confidence 477776654 3455578999999999999999999999999988754 112 222344456667777889
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003449 575 IDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHF 654 (819)
Q Consensus 575 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 654 (819)
.+.|.+.|..++... +.-...+..++......+...+|...+....... ..++..+..+.+.+.+...+..|.+-|..
T Consensus 512 ~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~ 589 (1018)
T KOG2002|consen 512 TEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFET 589 (1018)
T ss_pred hhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHH
Confidence 999999999999864 4456666666655566788999999999988754 34677777888888888888889887777
Q ss_pred HhhCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003449 655 MNDSG-FTPSLTTYNTLMYMYSR------------SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRI 721 (819)
Q Consensus 655 ~~~~~-~~p~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 721 (819)
+.+.- ..+|.++..+|.+.|.+ .+..++|+++|.++++.. +-|...-|.+.-.++..|++.+|..+
T Consensus 590 i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dI 668 (1018)
T KOG2002|consen 590 ILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDI 668 (1018)
T ss_pred HHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHH
Confidence 66542 23677887777776643 356788999999999874 33788888899999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCC
Q 003449 722 FSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGC-KPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 722 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 800 (819)
|.++.+... -...+|.+++++|...|+|..|+++|+...+.-. .-+..+...|++++++.|++.+|.+.+..+....|
T Consensus 669 FsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 669 FSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 999998743 2456899999999999999999999999886533 33788999999999999999999999999999999
Q ss_pred CCCHHHHHHH
Q 003449 801 HVTKELECKL 810 (819)
Q Consensus 801 ~~~~~~~~~l 810 (819)
.++...++..
T Consensus 748 ~~~~v~FN~a 757 (1018)
T KOG2002|consen 748 SNTSVKFNLA 757 (1018)
T ss_pred ccchHHhHHH
Confidence 9999877763
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=2.9e-22 Score=225.37 Aligned_cols=581 Identities=12% Similarity=0.050 Sum_probs=413.8
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHH
Q 003449 185 KEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIM 264 (819)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~ 264 (819)
..|++++|+..|+.+.+..+. +..++..|...|.+.|++++|+..+++..+. .|+...|..++..+ + ++.+|.
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~-~~~kA~ 128 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---P-VEVKSV 128 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---c-cChhHH
Confidence 459999999999999988766 5889999999999999999999999999987 44444444444444 5 688999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHH--------HHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHH-HHHHHhCCCHHHHHH
Q 003449 265 ALVEGMKSAGVKPDSYTFNTLISC--------CRRGSLHEEAAGVFEEMKLAGFSPDKVTYNAL-LDVYGKCRRPKEAMQ 335 (819)
Q Consensus 265 ~~~~~~~~~g~~p~~~~~~~ll~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~ 335 (819)
..++++.+.... +..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|++
T Consensus 129 ~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 129 TTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 999999987533 44555555444 5544 56666665 3333333345444444 899999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003449 336 VLREMKINGCLPSIVTYNSLISAYAR-DGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAG 414 (819)
Q Consensus 336 ~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 414 (819)
+++++.+.+. .+......|..+|.. .++ +++..+++. .++-|......++..|.+.|+.++|.++++++....
T Consensus 204 lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 204 LYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 9999999853 355667778788888 477 888888654 233578889999999999999999999999976543
Q ss_pred CC-CCHHHHHHHHHHHHccCCHH-HHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 003449 415 CK-PNICTFNALIKMHGNRGNFV-EMMKVFDEINKCNCKPD-IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDT 491 (819)
Q Consensus 415 ~~-~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 491 (819)
.. |...++..++. +.+... .|..-|.+ + ..++ ....-.++..+.+.++++.++++.. +.|....
T Consensus 278 ~~~~~~~~~~~~l~---r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 344 (987)
T PRK09782 278 TTDAQEKSWLYLLS---KYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM 344 (987)
T ss_pred cCCCccHHHHHHHH---hccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH
Confidence 22 44444443333 333321 12211211 0 0111 1122334777888999987665522 3333333
Q ss_pred HHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHH
Q 003449 492 FNTLISAY--SRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGG-R-CKPNELTYSSLLH 567 (819)
Q Consensus 492 ~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~-~~~~~~~~~~l~~ 567 (819)
. .+... ...+...++.+.+..|...... +......+.-...+.|+.++|.++|+..... + ...+.....-++.
T Consensus 345 ~--~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~ 421 (987)
T PRK09782 345 L--EERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLAS 421 (987)
T ss_pred H--HHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHH
Confidence 2 22222 2346777888888888775332 6666666666788999999999999998762 1 2234445557777
Q ss_pred HHHccCC---HHHHHHH----------------------HHHHHhC--CCCC--CHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003449 568 AYANGRE---IDQMLAL----------------------SEEIYSG--IIEP--HAVLLKTLILVYSKSDLLMDTERAFL 618 (819)
Q Consensus 568 ~~~~~~~---~~~a~~~----------------------~~~~~~~--~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 618 (819)
.|...+. ..++..+ ++..... ..+. +...+..++.++.. ++..+|...+.
T Consensus 422 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~ 500 (987)
T PRK09782 422 LLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWL 500 (987)
T ss_pred HHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHH
Confidence 7777655 3333222 1111111 1133 66778888888877 88999999888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003449 619 ELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD 698 (819)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 698 (819)
+.... .|+......+...+...|++++|...++++... +|+...+..+..++.+.|+.++|...+++.++.+ ..+
T Consensus 501 ~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~ 575 (987)
T PRK09782 501 QAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGD 575 (987)
T ss_pred HHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Ccc
Confidence 88776 355544444555567899999999999998764 4555667777888999999999999999999864 223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003449 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 777 (819)
...+..+...+...|++++|...+++..+ ..|+...+..++.++.+.|++++|+..++++++ ..| +...+..++.
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~ 651 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGY 651 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 34444444455566999999999999998 567888999999999999999999999999998 467 6788899999
Q ss_pred HHHhcCcHHHHHHHHHHhhhcCCCCCHHHHHH
Q 003449 778 GYCKLNQRYEAITFVNNLSKLDPHVTKELECK 809 (819)
Q Consensus 778 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 809 (819)
.+...|++++|+..++++++.+|++....++.
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nL 683 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKGLPDDPALIRQL 683 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999999999999987665443
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=2.6e-23 Score=205.43 Aligned_cols=442 Identities=14% Similarity=0.102 Sum_probs=309.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 003449 353 NSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNR 432 (819)
Q Consensus 353 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 432 (819)
..|..-..+.|++++|++.-...-..+. -+......+-..+.+..+.+....--....+.. +.-..+|..+...+...
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 3445555566666666665443333211 111122222233444444444443333333321 22345666677777777
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHH
Q 003449 433 GNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDT-FNTLISAYSRCGSFDQAMSI 511 (819)
Q Consensus 433 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~ 511 (819)
|++++|+.+++.+.+.. +..+..|..+..++...|+.+.|...|.+..+. .|+... ...+...+-..|++.+|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 77777777777776653 334666777777777777777777777776654 333332 23344455557888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 003449 512 YKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPN-ELTYSSLLHAYANGREIDQMLALSEEIYSGII 590 (819)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 590 (819)
|.+.++.... =...|+.|...+..+|+...|+..|++..+. .|+ ...|..|...|...+.++.|+..|...+...
T Consensus 207 YlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 207 YLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 8777765332 3466777777888888888888888888765 344 3577778888888888888888888877653
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003449 591 EPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTL 670 (819)
Q Consensus 591 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 670 (819)
+.....+..++..|...|.++-|++.|++.++..+ .-..+|+.|..++-..|++.+|.+.+.+..... +-.....+.|
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL 360 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL 360 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 45567777788888888888888888888887631 236778888888888888888888888888753 3445677888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC
Q 003449 671 MYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI-TYNTFVASYAADS 748 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g 748 (819)
...|.+.|.+++|..+|....+- .|. ....+.|...|.++|++++|+..+++.+. +.|+.. .|..++..|-..|
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhh
Confidence 88888888888888888888874 444 66788888888888888888888888887 677654 7888888888888
Q ss_pred ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 003449 749 LFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLS 811 (819)
Q Consensus 749 ~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~ 811 (819)
+.+.|+..+.+++. +.| -......|+..|...|...+|+.-|+.++++.|+.++...+.+.
T Consensus 437 ~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh 498 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH 498 (966)
T ss_pred hHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHH
Confidence 88888888888887 567 45777888888888888888888888888888888776655443
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2e-20 Score=195.67 Aligned_cols=597 Identities=14% Similarity=0.101 Sum_probs=429.3
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 003449 189 VSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEG--CKPTLITYNVILNVYGKMGMPWNKIMAL 266 (819)
Q Consensus 189 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~~a~~~ 266 (819)
++.|.+.|..+.+..+. ++-.+-.-.......|++..|+.+|......+ +.||+. -.+.-++.+.| ..+.|...
T Consensus 146 ~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~-~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPD-NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLG-MSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhCCc-chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhcc-chhhHHHH
Confidence 68888888888877543 44444444444556778999999999876553 344443 23334566778 78899999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 003449 267 VEGMKSAGVKPDSYTFNTLISCCRR---GSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKIN 343 (819)
Q Consensus 267 ~~~~~~~g~~p~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 343 (819)
|++..+.+. -++.++..|...-.. ...+..+...+...-... .-|..+.+.|...|.-.|+++.+..+...+...
T Consensus 222 ~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 222 FERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 998888653 233333333322222 234556666666555443 346777888999999999999999998888764
Q ss_pred CCC--CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003449 344 GCL--PSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICT 421 (819)
Q Consensus 344 g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 421 (819)
-.. --...|..+.++|-..|++++|...|.+..+..-.--+..+..+...+...|+++.+...|+.+.+.. +.+..+
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~et 378 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYET 378 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHH
Confidence 211 12345788899999999999999999888775322223456677888999999999999999988763 335667
Q ss_pred HHHHHHHHHccC----CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----HHCCCCCCHHHHH
Q 003449 422 FNALIKMHGNRG----NFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEM----KRAGFIPERDTFN 493 (819)
Q Consensus 422 ~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~~~~~~~~ 493 (819)
...|...|...+ ..+.|..++.+..+.- +.|...|-.+...+....-+.. +..|... ...+-.+.....+
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHH
Confidence 777777777664 5677888888777653 5577778777777766554444 6666544 3455557788899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC---CCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHH
Q 003449 494 TLISAYSRCGSFDQAMSIYKRMLEA---GVTP------DLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNE-LTYS 563 (819)
Q Consensus 494 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~ 563 (819)
.+.......|++..|...|+..... ...+ +..+--.+...+-..++.+.|.+.|..+.+. -|.. ..|.
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~yl 534 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYL 534 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHH
Confidence 9999999999999999999988765 1122 2223334555666678899999999999876 3433 3344
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHH--
Q 003449 564 SLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGF-SPDIPTLNAMISIYG-- 640 (819)
Q Consensus 564 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-- 640 (819)
-+...-...+...+|...+.+++..+ ..++..+..++..+.+...+..|..-|..+.+.-. .+|..+...|.+.|.
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 44323334577888999999988765 66677778888889999999888887777765322 257777777777553
Q ss_pred ----------hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003449 641 ----------RRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC 710 (819)
Q Consensus 641 ----------~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 710 (819)
..+..++|+++|.+.++.. +-|.+.-|.+..+++..|++..|..+|.++.+.. ..+..+|..++++|.
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYV 691 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHH
Confidence 2356788999999998864 6688888999999999999999999999999864 336678999999999
Q ss_pred hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH--------
Q 003449 711 RNGRMKEASRIFSEMRDS-GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYC-------- 780 (819)
Q Consensus 711 ~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~-------- 780 (819)
.+|++-.|+++|+...+. +-..+..+...|+.++...|++.+|.+.+..+.. ..| |......++....
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~--~~p~~~~v~FN~a~v~kkla~s~lr 769 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH--LAPSNTSVKFNLALVLKKLAESILR 769 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCccchHHhHHHHHHHHHHHHHHh
Confidence 999999999999998875 3345677899999999999999999999999887 455 4443333433322
Q ss_pred -----------hcCcHHHHHHHHHHhhhcCCC
Q 003449 781 -----------KLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 781 -----------~~g~~~~A~~~~~~~~~~~p~ 801 (819)
..+..++|.++|..+...++.
T Consensus 770 ~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 770 LEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 235578889999998887665
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.7e-22 Score=199.72 Aligned_cols=447 Identities=14% Similarity=0.155 Sum_probs=265.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH
Q 003449 282 FNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYAR 361 (819)
Q Consensus 282 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 361 (819)
...|..-..+.|++++|++.-...-..+ +.+....-.+-.++....+.+.....-....+. .+.-..+|+.+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 3445555566666666665544333332 112222222233444455555444333333222 22245566666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCHHHHH
Q 003449 362 DGLLEEAMELKTQMVEIGITP-DVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICT-FNALIKMHGNRGNFVEMM 439 (819)
Q Consensus 362 ~g~~~~A~~~~~~m~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~ 439 (819)
.|++++|+.+++.+++. +| ....|..+..++...|+.+.|.+.|.+.++. .|+... ...+...+...|++++|.
T Consensus 129 rg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 66666666666666664 22 3345666666666666666666666666554 233222 222333333455555555
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003449 440 KVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAG 519 (819)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 519 (819)
..+.+..+.. +--...|.. |...+-.+|+...|++.|++..+.+
T Consensus 205 ~cYlkAi~~q-p~fAiawsn-----------------------------------Lg~~f~~~Gei~~aiq~y~eAvkld 248 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSN-----------------------------------LGCVFNAQGEIWLAIQHYEEAVKLD 248 (966)
T ss_pred HHHHHHHhhC-Cceeeeehh-----------------------------------cchHHhhcchHHHHHHHHHHhhcCC
Confidence 5555544431 111233444 4444445555555555555544432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003449 520 VTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKT 599 (819)
Q Consensus 520 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 599 (819)
.. -...|-.|...|...+.+++|...|.+..... +.....+..+...|..+|.++-|+..|++.++.. +.-...|+.
T Consensus 249 P~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~N 325 (966)
T KOG4626|consen 249 PN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNN 325 (966)
T ss_pred Cc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhH
Confidence 11 23445555555555555555555555554431 2223344444444555666666666666655542 333556666
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 003449 600 LILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSEN 679 (819)
Q Consensus 600 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 679 (819)
++.++-..|++.+|.+.|.+.+... ..-..+.+.|..+|...|.+++|..+|....+.. +--....+.|...|-.+|+
T Consensus 326 lanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 326 LANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhccc
Confidence 6666666677777777776666542 2245667788888888888888888888877642 2233557888888888999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHH
Q 003449 680 FARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVV 757 (819)
Q Consensus 680 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 757 (819)
+++|+..+++.+. ++|+ ...|+.+...|...|+.+.|...+.+.+. +.|.. ..++.|+..|-..|++.+|+..|
T Consensus 404 l~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 404 LDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred HHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 9999999988887 5666 67888888889999999999999888887 55544 47788888888999999999999
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHHh
Q 003449 758 RYMIKQGCKPN-QNTYNSIVDGYCK 781 (819)
Q Consensus 758 ~~~~~~g~~p~-~~~~~~l~~~~~~ 781 (819)
+.+++ ++|| +..+..++.++.-
T Consensus 480 ~~aLk--lkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 480 RTALK--LKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHHc--cCCCCchhhhHHHHHHHH
Confidence 99888 6775 4566666666543
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=3.1e-19 Score=198.49 Aligned_cols=96 Identities=13% Similarity=0.059 Sum_probs=70.0
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003449 315 VTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGF 394 (819)
Q Consensus 315 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~ 394 (819)
..+......|.+.|++++|+..|++.... .|+...|..+..+|.+.|++++|++.+.+.++.. +.+...+..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 34556667778888888888888887763 4566777778888888888888888888877753 22455677777788
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 003449 395 EKAGKDESAMKVFEEMRSA 413 (819)
Q Consensus 395 ~~~g~~~~A~~~~~~~~~~ 413 (819)
...|++++|+..|..+...
T Consensus 205 ~~lg~~~eA~~~~~~~~~~ 223 (615)
T TIGR00990 205 DGLGKYADALLDLTASCII 223 (615)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888777665544
No 18
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.90 E-value=1.4e-16 Score=159.45 Aligned_cols=591 Identities=11% Similarity=0.064 Sum_probs=450.3
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------------HH
Q 003449 187 GKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILN-------------VY 253 (819)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~-------------~~ 253 (819)
++...|+-++..+.+.++. ++..|-+-.+.=-..|++..|..+..+=-+. ++.+...|.--++ +.
T Consensus 265 ~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeaiRLhp~d~aK~vvA~Av 342 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAIRLHPPDVAKTVVANAV 342 (913)
T ss_pred HHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHHhcCChHHHHHHHHHHH
Confidence 4567777788877777654 3445544444445566666666555433222 2222333322211 11
Q ss_pred H----------hcC---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 003449 254 G----------KMG---MPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNAL 320 (819)
Q Consensus 254 ~----------~~g---~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 320 (819)
- +.- .+...-.+++.+..+. ++.++..|.. ......-+.|..++.+..+. ++.....
T Consensus 343 r~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKa----AVelE~~~darilL~rAvec-cp~s~dL---- 412 (913)
T KOG0495|consen 343 RFLPTSVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKA----AVELEEPEDARILLERAVEC-CPQSMDL---- 412 (913)
T ss_pred HhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHH----HHhccChHHHHHHHHHHHHh-ccchHHH----
Confidence 0 000 0111112233333332 2222333332 22334455577777777765 3333333
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHh
Q 003449 321 LDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQM----VEIGITPDVFTYTTLLSGFEK 396 (819)
Q Consensus 321 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~pd~~~~~~l~~~~~~ 396 (819)
.-+|.+..-++.|.++++...+. ++.+...|.+-...--.+|+.+...+++++- ...|+..+...|..=...|-.
T Consensus 413 wlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 34556677889999999998886 7778889998888888899999998887764 446888888888888889999
Q ss_pred cCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003449 397 AGKDESAMKVFEEMRSAGCKP--NICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVS 474 (819)
Q Consensus 397 ~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 474 (819)
.|..-.+..+....+..|+.. -..+|+.-.+.|.+.+.++-|..+|....+.. +.+...|......--..|..++..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHH
Confidence 999999999999998887653 25688999999999999999999999888753 456778888888888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003449 475 GVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGR 554 (819)
Q Consensus 475 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 554 (819)
.+|++....- +-....+......+-..|+...|..++....+.... +...|-.-+.....+..++.|..+|.+....
T Consensus 571 Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~- 647 (913)
T KOG0495|consen 571 ALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI- 647 (913)
T ss_pred HHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence 9999998863 335566777788888899999999999999987655 7888989999999999999999999998874
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003449 555 CKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNA 634 (819)
Q Consensus 555 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 634 (819)
.++...|..-+..---.++.++|++++++.++.. +.-..+|..+++.+.+.++++.|...|..-.+. ++..+..|..
T Consensus 648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWll 724 (913)
T KOG0495|consen 648 -SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLL 724 (913)
T ss_pred -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHH
Confidence 6777788777777777899999999999998863 666888999999999999999999999887765 3446777888
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003449 635 MISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR 714 (819)
Q Consensus 635 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 714 (819)
|...-.+.|.+-.|..++++..-.+ +-+...|...+.+-.+.|+.+.|..+..++++. ++.+...|..-|....+.++
T Consensus 725 LakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCccc
Confidence 8888889999999999999998765 667788999999999999999999999999876 55567788888877777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003449 715 MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVN 793 (819)
Q Consensus 715 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 793 (819)
-....+.+++ ...|+.+...++..+....++++|.++|.++++. .| +-.+|..+...+...|.-++-.++++
T Consensus 803 kTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 803 KTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred chHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 6666665555 4568889999999999999999999999999984 45 56889889999999999999999999
Q ss_pred HhhhcCCCCCHHH
Q 003449 794 NLSKLDPHVTKEL 806 (819)
Q Consensus 794 ~~~~~~p~~~~~~ 806 (819)
+....+|...+..
T Consensus 876 ~c~~~EP~hG~~W 888 (913)
T KOG0495|consen 876 KCETAEPTHGELW 888 (913)
T ss_pred HHhccCCCCCcHH
Confidence 9999999876554
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=3.2e-18 Score=190.43 Aligned_cols=431 Identities=10% Similarity=-0.027 Sum_probs=251.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 003449 279 SYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISA 358 (819)
Q Consensus 279 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 358 (819)
...+......+.+.|++++|...|++.+.. .|+...|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a 203 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 445677788899999999999999999876 5678889999999999999999999999998863 3467789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 003449 359 YARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEM 438 (819)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 438 (819)
|...|++++|+..|......+-..+.. ...++..+.. ..+........+.. +.+...+..+.. |......+..
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~ 276 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPR 276 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcc
Confidence 999999999999887766543221221 1112211111 12222222222221 111111111111 1110000000
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH---HHhcCChHHHHHHHHH
Q 003449 439 MKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPE-RDTFNTLISA---YSRCGSFDQAMSIYKR 514 (819)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~---~~~~g~~~~A~~~~~~ 514 (819)
..-+.+ ..+. .+. ...+..+... ....+++++|.+.|+.
T Consensus 277 ~~~~~~-----------------------------------~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~ 319 (615)
T TIGR00990 277 PAGLED-----------------------------------SNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEK 319 (615)
T ss_pred hhhhhc-----------------------------------cccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 000000 0000 000 0000011000 1223566677777776
Q ss_pred HHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 003449 515 MLEAG-VTP-DLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEP 592 (819)
Q Consensus 515 ~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 592 (819)
..+.+ ..| ....+..+...+...|++++|+..|++..+.. +.....|..+...+...|++++|+..++++++.. +.
T Consensus 320 al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~ 397 (615)
T TIGR00990 320 ALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SE 397 (615)
T ss_pred HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 66543 112 33455666666667777777777777766542 2224456666666666777777777777766643 34
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003449 593 HAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMY 672 (819)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 672 (819)
+..++..++.++...|++++|...|++.++.. +.+...+..+...+.+.|++++|+..++...+.. +.+...++.+..
T Consensus 398 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~ 475 (615)
T TIGR00990 398 DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGE 475 (615)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45566666666777777777777777766653 2245556666667777777777777777766542 344566677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 003449 673 MYSRSENFARAEDVLREILAKGIKPDII------SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYA 745 (819)
Q Consensus 673 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~ 745 (819)
++...|++++|++.|++.+......+.. .++..+..+...|++++|.+++++..+. .|+. ..+..++..+.
T Consensus 476 ~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~ 553 (615)
T TIGR00990 476 LLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLL 553 (615)
T ss_pred HHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence 7777777777777777776542111110 1111122233356777777777776663 3333 35666777777
Q ss_pred hcCChHHHHHHHHHHHH
Q 003449 746 ADSLFVEALDVVRYMIK 762 (819)
Q Consensus 746 ~~g~~~~A~~~~~~~~~ 762 (819)
..|++++|+.+++++.+
T Consensus 554 ~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 554 QQGDVDEALKLFERAAE 570 (615)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 77777777777777765
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=1.7e-18 Score=191.51 Aligned_cols=359 Identities=9% Similarity=-0.042 Sum_probs=201.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChH
Q 003449 394 FEKAGKDESAMKVFEEMRSAG--CKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDS 471 (819)
Q Consensus 394 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 471 (819)
+.+..+++.-.-+|....++. ..-+..-...++..+...|++++|..+++.+.... +-+...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHH
Confidence 344556665555554433221 00112223334455556677777777776666553 233444555555666677777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003449 472 EVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMK 551 (819)
Q Consensus 472 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 551 (819)
+|...++++.+.... +...+..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 777777776665322 4455666666666777777777777766664322 45556666666667777777777666665
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHH
Q 003449 552 GGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPT 631 (819)
Q Consensus 552 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 631 (819)
... +.+...+..+ ..+...|++++|...++.++......+......++..+...|++++|...++++.... +.+...
T Consensus 172 ~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 432 1222222222 2355666666666666666554322333333344555666666666666666666543 224555
Q ss_pred HHHHHHHHHhcCChHH----HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003449 632 LNAMISIYGRRQMVAK----TNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIF 707 (819)
Q Consensus 632 ~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 707 (819)
+..+...+...|++++ |...+++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 5566666666666654 566666666542 3344556666666666666666666666666542 113445555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 708 AYCRNGRMKEASRIFSEMRDSGLVPDVI-TYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 708 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+|.+.|++++|...++++.+. .|+.. .+..++.++...|++++|+..++++++
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666666653 33332 233345556666666666666666665
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=2.5e-19 Score=189.54 Aligned_cols=301 Identities=13% Similarity=0.081 Sum_probs=199.5
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCC
Q 003449 182 MLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPT---LITYNVILNVYGKMGM 258 (819)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~ 258 (819)
.+...|+++.|...|.++.+.+.. +..++..+...|.+.|++++|..+++.+.+.+..++ ...+..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g- 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG- 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC-
Confidence 344667788888888887776432 556777788888888888888888887776432211 245667777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhCCCHHHHH
Q 003449 259 PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPD----KVTYNALLDVYGKCRRPKEAM 334 (819)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 334 (819)
++++|..+|+++.+.. ..+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 7777777777777642 23566777777777777777777777777776543221 123445666667777777777
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003449 335 QVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAG 414 (819)
Q Consensus 335 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 414 (819)
..|+++.+.. +.+...+..++..|.+.|++++|.++|+++.+.+......++..++.+|...|++++|...++++.+.
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 7777776642 23455666677777777777777777777776532222345666777777777777777777777665
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHH
Q 003449 415 CKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQ---NGMDSEVSGVFKEMKRAGFIPERD 490 (819)
Q Consensus 415 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 490 (819)
.|+...+..++..+.+.|++++|.++++++.+. .|+...++.++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 244445566777777777777777777776654 4666666666666553 446677777777777665555444
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=1.6e-17 Score=188.13 Aligned_cols=412 Identities=12% Similarity=0.051 Sum_probs=250.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003449 352 YNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGN 431 (819)
Q Consensus 352 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 431 (819)
..-.+......|+.++|++++.+..... +.+...+..+...+...|++++|..++++.++.. +.+...+..++..+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344445555666666666666665421 2233345566666666666666666666665542 2234445555556666
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003449 432 RGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSI 511 (819)
Q Consensus 432 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 511 (819)
.|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.... +...+..+...+...|..+.|++.
T Consensus 96 ~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHH
Confidence 666666666666665542 22333 555555555556666666666555554322 333344445555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HccCCH---HHHHHHHH
Q 003449 512 YKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAY-----ANGREI---DQMLALSE 583 (819)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~-----~~~~~~---~~a~~~~~ 583 (819)
++.+.. .|+.. .. + ... ....++... ...+++ ++|+..++
T Consensus 173 l~~~~~---~p~~~--~~-l-------~~~-------------------~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 173 IDDANL---TPAEK--RD-L-------EAD-------------------AAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HHhCCC---CHHHH--HH-H-------HHH-------------------HHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 544332 11100 00 0 000 000111111 111222 56666666
Q ss_pred HHHhCC-CCCC--HHHH---HHHHHHHhcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 003449 584 EIYSGI-IEPH--AVLL---KTLILVYSKSDLLMDTERAFLELKKKGFS-PDIPTLNAMISIYGRRQMVAKTNEILHFMN 656 (819)
Q Consensus 584 ~~~~~~-~~~~--~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 656 (819)
.+++.. ..|+ .... ...+..+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+.+.
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 666431 1111 1111 11122345668888888888888776432 222 22224667888888999999888877
Q ss_pred hCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHH
Q 003449 657 DSGFTPS-----LTTYNTLMYMYSRSENFARAEDVLREILAKGI-----------KPD---IISYNTVIFAYCRNGRMKE 717 (819)
Q Consensus 657 ~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~ 717 (819)
+.. |. ......+..++...|++++|.+.++++..... .|+ ...+..++..+...|++++
T Consensus 300 ~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 300 YHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred hcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 642 22 23456666778888999999999988886421 122 2345667788889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhh
Q 003449 718 ASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLS 796 (819)
Q Consensus 718 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 796 (819)
|+++++++.... .-+...+..++..+...|++++|+..++++++ +.| +...+...+..+.+.|++++|...+++++
T Consensus 378 A~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 378 AEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999998852 22456788999999999999999999999998 567 56778888889999999999999999999
Q ss_pred hcCCCCCHHH
Q 003449 797 KLDPHVTKEL 806 (819)
Q Consensus 797 ~~~p~~~~~~ 806 (819)
+..|++..+.
T Consensus 455 ~~~Pd~~~~~ 464 (765)
T PRK10049 455 AREPQDPGVQ 464 (765)
T ss_pred HhCCCCHHHH
Confidence 9999987664
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=7e-17 Score=178.36 Aligned_cols=451 Identities=11% Similarity=0.080 Sum_probs=292.6
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003449 323 VYGKCRRPKEAMQVLREMKINGCLPSI--VTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKD 400 (819)
Q Consensus 323 ~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~ 400 (819)
...+.|+++.|+..|++..+. .|+. ..+ .++..+...|+.++|+..+++.... ..........+...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCH
Confidence 345777777777777777664 2332 223 6667777777777777777777621 111222333335566677777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003449 401 ESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 480 (819)
Q Consensus 401 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 480 (819)
++|+++++++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 77777777777664 224555666667777777777777777777655 344444433333333345555577777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003449 481 KRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNEL 560 (819)
Q Consensus 481 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 560 (819)
.+... .+...+..+...+.+.|-...|.++..+-... + +...+.-+- .+.|.+..+-... .+...
T Consensus 196 l~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~l~--------~~~~a~~vr~a~~---~~~~~ 260 (822)
T PRK14574 196 VRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQLE--------RDAAAEQVRMAVL---PTRSE 260 (822)
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHHHH--------HHHHHHHHhhccc---ccccc
Confidence 76642 25555666666666777666666554432110 0 111111100 0111111111100 00000
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003449 561 TYSSLLHAYANGREIDQMLALSEEIYSGI--IEPH----AVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNA 634 (819)
Q Consensus 561 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 634 (819)
-. +-.-.+.|+.-++.++..- .++. ..+....+-++...+++.++++.|+.+...+.+....+...
T Consensus 261 -----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a 332 (822)
T PRK14574 261 -----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW 332 (822)
T ss_pred -----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence 00 0002345556666655421 1222 12223445577788999999999999998776555667788
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC
Q 003449 635 MISIYGRRQMVAKTNEILHFMNDSG-----FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGI-----------KPD 698 (819)
Q Consensus 635 l~~~~~~~~~~~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~ 698 (819)
++++|...+++++|..+++.+.... .+++......|..+|...+++++|..+++++.+... .|+
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 8999999999999999999986642 123444467889999999999999999999987311 122
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHH
Q 003449 699 ---IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNS 774 (819)
Q Consensus 699 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~ 774 (819)
...+..++..+...|++.+|.+.++++.... .-|......++..+...|.+.+|+.+++.+.. +.| +..+...
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~ 489 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERA 489 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHH
Confidence 2344556778889999999999999998753 22677888999999999999999999988776 467 5677778
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHH
Q 003449 775 IVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 775 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
.+..+...|++++|....+++.+..|++..+.
T Consensus 490 ~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 490 QAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 89999999999999999999999999997664
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=4.5e-19 Score=187.62 Aligned_cols=298 Identities=13% Similarity=0.116 Sum_probs=141.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 003449 462 AVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPD---LSTYNAVLAALARGG 538 (819)
Q Consensus 462 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 538 (819)
..+...|++++|...|+++.+.+. .+..++..+...+...|++++|..+++.+......++ ...+..++..|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 344555666666666666665432 2344555555666666666666666665555321111 134455555555666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003449 539 MWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFL 618 (819)
Q Consensus 539 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 618 (819)
++++|..+|+++.+.. +.+..++..++..+...|++++|...++.+.+.+..+....
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 6666666666655431 23344555555555555555555555555554332111100
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003449 619 ELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD 698 (819)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 698 (819)
....+..++..+.+.|++++|...++++.+.. +.+...+..++..+.+.|++++|.++++++.+.+....
T Consensus 179 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 179 ---------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred ---------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 00112333444444455555555555544432 22233444444555555555555555555544321111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003449 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDG 778 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 778 (819)
..+++.++.+|+..|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++++. .|+...+..++..
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~ 324 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHH
Confidence 233444455555555555555555555442 333334444555555555555555555555442 3444444444444
Q ss_pred HHh---cCcHHHHHHHHHHhhh
Q 003449 779 YCK---LNQRYEAITFVNNLSK 797 (819)
Q Consensus 779 ~~~---~g~~~~A~~~~~~~~~ 797 (819)
+.. .|+.++|...++++.+
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hhhccCCccchhHHHHHHHHHH
Confidence 332 2344555555554443
No 25
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.87 E-value=3.2e-15 Score=156.27 Aligned_cols=615 Identities=12% Similarity=0.083 Sum_probs=417.6
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 003449 180 ISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMP 259 (819)
Q Consensus 180 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 259 (819)
...+...|++++|..++.++++.... ....|..|..+|-..|+.+++...+-.....++. |...|-.+.....+.| .
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~-~ 222 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLG-N 222 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcc-c
Confidence 33444459999999999999988655 6789999999999999999999988777766543 6789999999999999 8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHH----HHHHHHHhCCCHHHHHH
Q 003449 260 WNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYN----ALLDVYGKCRRPKEAMQ 335 (819)
Q Consensus 260 ~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~ 335 (819)
+++|.-.|.+.++.... +...+-.-...|-+.|+...|...|.++.....+.|..-.. ..++.|...++-+.|.+
T Consensus 223 i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999987633 44444555677889999999999999999884333333232 33566777788899999
Q ss_pred HHHHHHHC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------------------------CCCHHHH
Q 003449 336 VLREMKIN-GCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGI---------------------------TPDVFTY 387 (819)
Q Consensus 336 ~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------------------------~pd~~~~ 387 (819)
.++..... +-..+...++.++..|.+...++.|.....++..... .++...
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v- 380 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV- 380 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-
Confidence 98887663 2334666789999999999999999999888876222 222222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 003449 388 TTLLSGFEKAGKDESAMKVFEEMRSAG--CKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFG 465 (819)
Q Consensus 388 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 465 (819)
..++-++......+....+...+.... +.-+...|.-+.++|...|++.+|+.+|..+.......+...|-.+.+.|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 123334444555555555555555555 344577889999999999999999999999998866667889999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhc
Q 003449 466 QNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA--------GVTPDLSTYNAVLAALARG 537 (819)
Q Consensus 466 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~ 537 (819)
..|.+++|.+.|+..+.... .+...-..|...+.+.|+.++|.+.+..+..- +..|+....-.....+.+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 99999999999999988643 36667788889999999999999999986532 2334444444555677888
Q ss_pred CCHHHHHHHHHHHHhCC-----C-----------------CCCHHHHHHHHHHHHccCCHHHHHHHHH------HHHhCC
Q 003449 538 GMWEQSEKIFAEMKGGR-----C-----------------KPNELTYSSLLHAYANGREIDQMLALSE------EIYSGI 589 (819)
Q Consensus 538 g~~~~A~~~~~~m~~~~-----~-----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~ 589 (819)
|+.++=+.+-.+|+... + .-.......++.+-.+.++......-.. -....+
T Consensus 540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~ 619 (895)
T KOG2076|consen 540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG 619 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence 98888666665554311 1 1111122222333333222111111110 011111
Q ss_pred CCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHhcCChHHHHHHHHHHhhC-CCC
Q 003449 590 IEPH--AVLLKTLILVYSKSDLLMDTERAFLELKKKGF-SPDIP----TLNAMISIYGRRQMVAKTNEILHFMNDS-GFT 661 (819)
Q Consensus 590 ~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~ 661 (819)
..-+ -..+..++..+++.+++++|..+...+..... ..+.. .-...+.+....+++..|...++.|... +..
T Consensus 620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~ 699 (895)
T KOG2076|consen 620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY 699 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh
Confidence 1112 24566778889999999999999888775321 11222 2244555667889999999999988865 111
Q ss_pred --C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003449 662 --P-SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYN 738 (819)
Q Consensus 662 --p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 738 (819)
+ -...|+.....+.+.++-..-.+++..+......-++.......+.+..++.+..|+..+-++.. ..||....+
T Consensus 700 ~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~n 777 (895)
T KOG2076|consen 700 LDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QNPDSPLIN 777 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH--hCCCCcHHH
Confidence 1 12345655566666666555555555554432222233333344556677889999998887776 355532222
Q ss_pred -HHHHHHH----------hcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCC
Q 003449 739 -TFVASYA----------ADSLFVEALDVVRYMIKQGCK-PNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 739 -~l~~~~~----------~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
.++.++. ++-.+-.++.++++..+.... -...+++.++++|...|-.--|..+|+++++..|.+
T Consensus 778 l~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~ 853 (895)
T KOG2076|consen 778 LCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKD 853 (895)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccc
Confidence 2222221 111245667777777663211 146889999999999999999999999999997543
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.2e-17 Score=184.59 Aligned_cols=382 Identities=9% Similarity=-0.014 Sum_probs=265.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 003449 359 YARDGLLEEAMELKTQMVEIG--ITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFV 436 (819)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~g--~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 436 (819)
+.+..+++..--+|....+.- -.-+..-...++..+.+.|++++|..+++........ +......++......|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 445566666555555433320 0112223444566677888888888888888776433 3445555666667788888
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003449 437 EMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRML 516 (819)
Q Consensus 437 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 516 (819)
+|...|+++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 8888888887764 4456777778888888888888888888887753 2255677778888888888888888888776
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 003449 517 EAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVL 596 (819)
Q Consensus 517 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 596 (819)
..... +...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...+++++... +.+...
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 65433 23333333 3467788888888888887765433344444555667778888888888888888764 455677
Q ss_pred HHHHHHHHhcCCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003449 597 LKTLILVYSKSDLLMD----TERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMY 672 (819)
Q Consensus 597 ~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 672 (819)
+..++..+...|++++ |...|+++.+..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 7778888888888875 7888888877642 356778888888888888888888888888753 445566777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003449 673 MYSRSENFARAEDVLREILAKGIKPDI-ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFV 751 (819)
Q Consensus 673 ~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 751 (819)
++.+.|++++|+..++++... .|+. ..+..+..++...|++++|.+.|+++.+. .|+.. ...++
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~--~P~~~-----------~~~~~ 391 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA--RASHL-----------PQSFE 391 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Chhhc-----------hhhHH
Confidence 888888888888888888875 3443 33444567778888888888888888773 44432 34456
Q ss_pred HHHHHHHHHHHc
Q 003449 752 EALDVVRYMIKQ 763 (819)
Q Consensus 752 ~A~~~~~~~~~~ 763 (819)
+|...+.+.++.
T Consensus 392 ea~~~~~~~~~~ 403 (656)
T PRK15174 392 EGLLALDGQISA 403 (656)
T ss_pred HHHHHHHHHHHh
Confidence 777777776653
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=2.5e-16 Score=178.31 Aligned_cols=426 Identities=9% Similarity=0.032 Sum_probs=280.7
Q ss_pred CCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003449 311 SPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTL 390 (819)
Q Consensus 311 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 390 (819)
+.+.....-.+......|+.++|++++.+.... .+.+...+..+...+...|++++|.+++++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 445555666777888999999999999998763 24456679999999999999999999999998863 3356677788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh
Q 003449 391 LSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMD 470 (819)
Q Consensus 391 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 470 (819)
+..+...|+.++|...++++.+.. +.+.. +..+...+...|+.++|+..++++.+.. +.+...+..+...+...|..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence 889999999999999999998873 33556 8888999999999999999999999874 44566777788888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---H
Q 003449 471 SEVSGVFKEMKRAGFIPERD------TFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMW---E 541 (819)
Q Consensus 471 ~~a~~~~~~m~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~ 541 (819)
++|++.++.... .|+.. ....++......+ ....+++ +
T Consensus 167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~------------------------------~~~~~r~~~ad 213 (765)
T PRK10049 167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPT------------------------------RSEKERYAIAD 213 (765)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccc------------------------------cChhHHHHHHH
Confidence 999998876653 22210 0111111111100 0111112 3
Q ss_pred HHHHHHHHHHhC-CCCCCHH-HH----HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHH
Q 003449 542 QSEKIFAEMKGG-RCKPNEL-TY----SSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTER 615 (819)
Q Consensus 542 ~A~~~~~~m~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 615 (819)
+|++.++.+.+. ...|+.. .+ ...+..+...+++++|+..|+++...+.+........++.+|...|++++|+.
T Consensus 214 ~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 214 RALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 444444444422 0111110 00 00122233445555555555555544321111111223445555666666666
Q ss_pred HHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-----------CCCCH---HHHHHHHHHHHhcC
Q 003449 616 AFLELKKKGFSP---DIPTLNAMISIYGRRQMVAKTNEILHFMNDSG-----------FTPSL---TTYNTLMYMYSRSE 678 (819)
Q Consensus 616 ~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------~~p~~---~~~~~l~~~~~~~g 678 (819)
.|+++.+..... .......+..++...|++++|.+.++.+.+.. ..|+. ..+..++..+...|
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 666555432111 12334445555666677777777777666531 01231 24456677888899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 003449 679 NFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEALDVV 757 (819)
Q Consensus 679 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 757 (819)
++++|++.++++.... +.+...+..++..+...|++++|++.++++.+ +.|+ ...+...+..+...|++++|...+
T Consensus 374 ~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 374 DLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999998763 33578888889999999999999999999888 4565 456667777888999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHH
Q 003449 758 RYMIKQGCKPNQNTYNSIVDGY 779 (819)
Q Consensus 758 ~~~~~~g~~p~~~~~~~l~~~~ 779 (819)
+++++ ..|+......+-..+
T Consensus 451 ~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 451 DDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HHHHH--hCCCCHHHHHHHHHH
Confidence 99998 467554444444433
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=2.2e-14 Score=150.12 Aligned_cols=641 Identities=11% Similarity=0.055 Sum_probs=427.2
Q ss_pred HhhcCCCChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 003449 141 KGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYAS 220 (819)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 220 (819)
..+.-+|+.+.|.+++..+.. ..+.....|..+..++-..|+.+.+...+-.+....+. |...|..+.....+
T Consensus 147 N~lfarg~~eeA~~i~~EvIk------qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIK------QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHH------hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHh
Confidence 333445999999999999876 23456788999999999999999999888876665544 66899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHcCCCHH
Q 003449 221 NGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFN----TLISCCRRGSLHE 296 (819)
Q Consensus 221 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~----~ll~~~~~~g~~~ 296 (819)
.|.+++|.-.|.+..+..+. +...+---...|-+.| +...|..-|.++.....+.|-.-+. .++..+...++.+
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G-~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTG-DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred cccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhC-hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999988533 4444455566788899 8999999999999876533333333 3355677788889
Q ss_pred HHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCC---------------------------CCC
Q 003449 297 EAAGVFEEMKLAG-FSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGC---------------------------LPS 348 (819)
Q Consensus 297 ~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~---------------------------~~~ 348 (819)
.|.+.++.....+ -..+...++.++..|.+...++.|......+..... .++
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 9999998887632 234566789999999999999999988887765211 112
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003449 349 IVTYNSLISAYARDGLLEEAMELKTQMVEIG--ITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALI 426 (819)
Q Consensus 349 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 426 (819)
...+. +.-++......+....+.....+.. ..-++..|..+..++...|++.+|..++..+.....-.+..+|-.+.
T Consensus 378 l~v~r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVIR-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhHh-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 22211 1222333333344444444444444 33456689999999999999999999999999876666788999999
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--------CCCCCCHHHHHHHHHH
Q 003449 427 KMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKR--------AGFIPERDTFNTLISA 498 (819)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------~~~~~~~~~~~~l~~~ 498 (819)
.+|...|.+++|.+.|+.++... +-+...--.|...+.+.|+.++|.+.+..+.. .+..|+........+.
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 99999999999999999998763 34556667788889999999999999988542 2345555666667778
Q ss_pred HHhcCChHHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHH------HHH
Q 003449 499 YSRCGSFDQAMSIYKRMLEAG----------------------VTPDLSTYNAVLAALARGGMWEQSEKIF------AEM 550 (819)
Q Consensus 499 ~~~~g~~~~A~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~------~~m 550 (819)
+...|+.++-..+-..|+... ..........++.+-.+.++.....+-. .-.
T Consensus 536 l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~ 615 (895)
T KOG2076|consen 536 LFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAV 615 (895)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhh
Confidence 888898887666555554321 1111222223333333333322221111 111
Q ss_pred HhCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 003449 551 KGGRCKPNE--LTYSSLLHAYANGREIDQMLALSEEIYSGIIEP-HA----VLLKTLILVYSKSDLLMDTERAFLELKKK 623 (819)
Q Consensus 551 ~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 623 (819)
...+..-+. ..+..++.++++.+.+++|..+...+....... +. ..-...+.+.+..+++.+|...++.+...
T Consensus 616 e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 616 ELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred hhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 112222222 234556778889999999999999887654221 22 22334456677889999999999988753
Q ss_pred -CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003449 624 -GFSP---DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSL--TTYNTLMYMYSRSENFARAEDVLREILAKGIKP 697 (819)
Q Consensus 624 -~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 697 (819)
+... -...|+...+...+.++-.--...+...... .++. ..+.....-....+.+..|+..+-++... .|
T Consensus 696 ~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~--~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~p 771 (895)
T KOG2076|consen 696 FQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVK--NKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NP 771 (895)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CC
Confidence 1111 2334555555555555433333333333322 2222 22222334456678899999988887765 34
Q ss_pred CHHHHH-HHHHHHH----------hcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003449 698 DIISYN-TVIFAYC----------RNGRMKEASRIFSEMRDSG-LVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGC 765 (819)
Q Consensus 698 ~~~~~~-~l~~~~~----------~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 765 (819)
|.-..+ .++-++. ++-.+-.+..++++..+.. ..-...++.+++.+|-..|-..-|+.+|+++++...
T Consensus 772 d~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 772 DSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSP 851 (895)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCc
Confidence 522222 2222222 1112445666666665531 112356888999999999999999999999998421
Q ss_pred C-----------CCHHHHHHHHHHHHhcCcHHHHHHHHHHhh
Q 003449 766 K-----------PNQNTYNSIVDGYCKLNQRYEAITFVNNLS 796 (819)
Q Consensus 766 ~-----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 796 (819)
. --..+-..|.-.|..+|..+.|..++++..
T Consensus 852 ~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~kyl 893 (895)
T KOG2076|consen 852 KDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKYL 893 (895)
T ss_pred cccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhhc
Confidence 1 012344567778999999999999988753
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=3.5e-15 Score=165.10 Aligned_cols=439 Identities=14% Similarity=0.118 Sum_probs=224.1
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHH
Q 003449 289 CRRGSLHEEAAGVFEEMKLAGFSPDK--VTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLE 366 (819)
Q Consensus 289 ~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 366 (819)
..+.|+++.|...|++..+.. |+. ..+ .++..+...|+.++|+..+++.... ..........++..|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 456677777777777776652 332 233 6666666777777777777776511 1112222233345666667777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003449 367 EAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEIN 446 (819)
Q Consensus 367 ~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 446 (819)
+|+++|+++.+.... +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 777777777765322 3445556666677777777777777777665 3344444444444444555555777777777
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH------HHHHHHHHH-----HhcCC---hHHHHHHH
Q 003449 447 KCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERD------TFNTLISAY-----SRCGS---FDQAMSIY 512 (819)
Q Consensus 447 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~~~l~~~~-----~~~g~---~~~A~~~~ 512 (819)
+.. +-+...+..+..++.+.|-...|.++.++-.+. +.+... .....++.- ....+ .+.|+.-+
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 663 335666666777777777777776655442111 000000 000011000 00111 23344444
Q ss_pred HHHHHC-CCCCCH-HH----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003449 513 KRMLEA-GVTPDL-ST----YNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIY 586 (819)
Q Consensus 513 ~~~~~~-~~~~~~-~~----~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 586 (819)
+.+... +..|.. .. ..-.+-++...|++.++++.|+.+...+.+....+-..+..+|...+++++|..++..+.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 444432 111221 11 112334566677777777777777766544444566666777777777777777777765
Q ss_pred hCCC-----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 003449 587 SGII-----EPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPD-IPTLNAMISIYGRRQMVAKTNEILHFMNDSGF 660 (819)
Q Consensus 587 ~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 660 (819)
.... +++......|..++...+++++|..+++.+.+. .|. ...+ ... ....
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~-------~~~--------------~~~p 411 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVY-------GLP--------------GKEP 411 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEecc-------CCC--------------CCCC
Confidence 5321 112222345555566666666666666665542 110 0000 000 0000
Q ss_pred CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 003449 661 TPSLTT-YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VITYN 738 (819)
Q Consensus 661 ~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~ 738 (819)
.||-.. +..++..+...|++.+|++.++++.... +-|......+...+...|...+|...++.+.. +.|+ ..+..
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~ 488 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILER 488 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHH
Confidence 111111 2223344455555555555555555432 22455555555555555555555555544443 2332 22344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 003449 739 TFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
..+.++...|++++|..+.+.+.+
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh
Confidence 445555555555555555555554
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.83 E-value=4.6e-13 Score=134.72 Aligned_cols=559 Identities=12% Similarity=0.069 Sum_probs=392.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC------------CCCCHHHHHHHHHH
Q 003449 221 NGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAG------------VKPDSYTFNTLISC 288 (819)
Q Consensus 221 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g------------~~p~~~~~~~ll~~ 288 (819)
.++..+|+.++....+.++. +...|-+-.+.=...| .+..|..+..+-.+.- ..|....-..+..+
T Consensus 264 l~DikKaR~llKSvretnP~-hp~gWIAsArLEEvag-Kl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~A 341 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAG-KLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANA 341 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhh-HHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHH
Confidence 34678999999999988754 4444444433334444 4555555554433321 11111111111111
Q ss_pred ----------HHcC----CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 003449 289 ----------CRRG----SLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNS 354 (819)
Q Consensus 289 ----------~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 354 (819)
+++. .+...-.+++++.++. ++.++..|-. -....+.++|+-++.+..+. ++.+...|.+
T Consensus 342 vr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKa----AVelE~~~darilL~rAvec-cp~s~dLwlA 415 (913)
T KOG0495|consen 342 VRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKA----AVELEEPEDARILLERAVEC-CPQSMDLWLA 415 (913)
T ss_pred HHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHH----HHhccChHHHHHHHHHHHHh-ccchHHHHHH
Confidence 1111 1222233445554443 2333334433 33456667788888887775 4445555544
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHH
Q 003449 355 LISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEM----RSAGCKPNICTFNALIKMHG 430 (819)
Q Consensus 355 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~l~~~~~ 430 (819)
|++..-++.|.+++++..+. ++-|..+|.+-...-...|+.+...+++++- ...|+..+...|..=...+-
T Consensus 416 ----larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 416 ----LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred ----HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 45566688888888888876 6667778877777777888888888887764 35677778888888888888
Q ss_pred ccCCHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003449 431 NRGNFVEMMKVFDEINKCNCKP--DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQA 508 (819)
Q Consensus 431 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 508 (819)
..|..-.+..+...+...|+.- -..+|+.-...|.+.+..+-|..+|...++-- +-+...|...+..--..|..+..
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHH
Confidence 8888888888888887766543 24678888888888888888888888877652 22455666666555667888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 003449 509 MSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSG 588 (819)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 588 (819)
..+|++....-.+ ....|-.....+...|+...|..++....+.. +.+...|...+..-....+++.|..++.+....
T Consensus 570 ~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 570 EALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 8888888876332 45566666677788899999999988888764 346677888888888888999999998888763
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 003449 589 IIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYN 668 (819)
Q Consensus 589 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 668 (819)
.++..+|..-+......++.++|.+++++.++. ++.-...|..+...+.+.++++.|.+.|..-.+. ++-....|-
T Consensus 648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWl 723 (913)
T KOG0495|consen 648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWL 723 (913)
T ss_pred --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHH
Confidence 567777777777777788899999998888775 2333566778888888888888888888776654 355566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003449 669 TLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADS 748 (819)
Q Consensus 669 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 748 (819)
.+...-.+.|++-+|..++++..-.+.+ +...|...|.+-.+.|+.+.|..+..+.+.. +..+...|..-++..-+.+
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcc
Confidence 7777778888999999999988876533 7888888889889999999999888888764 3434556666666666666
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHH
Q 003449 749 LFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 749 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
+-...++.+++ .+-|+.+...++..+....++++|+++|.++.+.+|++.+..
T Consensus 802 rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~w 854 (913)
T KOG0495|consen 802 RKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAW 854 (913)
T ss_pred cchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHH
Confidence 64455544444 355778888999999999999999999999999999987763
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=3.5e-15 Score=142.09 Aligned_cols=360 Identities=15% Similarity=0.186 Sum_probs=203.9
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003449 348 SIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIK 427 (819)
Q Consensus 348 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 427 (819)
+..++..||.++|+--..+.|.+++++......+.+..+||.+|.+-.-.. ..+++.+|......||..|+|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHH
Confidence 444455555555555555555555555544444444555555544332111 1444555555555555555555555
Q ss_pred HHHccCCHHHH----HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHH----HCCCC---C-CHHHHHH
Q 003449 428 MHGNRGNFVEM----MKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSE-VSGVFKEMK----RAGFI---P-ERDTFNT 494 (819)
Q Consensus 428 ~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~----~~~~~---~-~~~~~~~ 494 (819)
+..+.|+++.| .+++.+|.+.|+.|...+|..+|..+++.++..+ +..++.++. ...+. | |...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 55555544432 3344455555555555555555555555554433 233333332 22222 2 4456777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003449 495 LISAYSRCGSFDQAMSIYKRMLEAG----VTPD---LSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLH 567 (819)
Q Consensus 495 l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 567 (819)
.+..|.+..+.+.|.++...+.... +.++ ...|..+....|+....+.-...|+.|.-.-..|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 8888888899999988877665431 2222 34466778888888999999999999998878899999999999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCh
Q 003449 568 AYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGR--RQMV 645 (819)
Q Consensus 568 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~ 645 (819)
+....+.++-.-+++.++...|...+..+...+... +....+.|+...-..+-....+ ..-.
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~----------------L~~~k~hp~tp~r~Ql~~~~ak~aad~~ 505 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILML----------------LARDKLHPLTPEREQLQVAFAKCAADIK 505 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHH----------------HhcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887755444444333333 3333223322211111111111 0111
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-C---CCHHHHHHHHHHHHhcCCHHHHHHH
Q 003449 646 AKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGI-K---PDIISYNTVIFAYCRNGRMKEASRI 721 (819)
Q Consensus 646 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~---p~~~~~~~l~~~~~~~g~~~~A~~~ 721 (819)
+.....-.++.+. .-.....+.++..+.+.|..++|.++|.-+.+.+- - |.......+++.-.+.+....|..+
T Consensus 506 e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~ 583 (625)
T KOG4422|consen 506 EAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEV 583 (625)
T ss_pred HHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 1112222333333 23444566666677778888888888777754432 1 2233333555666667777778888
Q ss_pred HHHHHHCC
Q 003449 722 FSEMRDSG 729 (819)
Q Consensus 722 ~~~~~~~g 729 (819)
++-|.+.+
T Consensus 584 lQ~a~~~n 591 (625)
T KOG4422|consen 584 LQLASAFN 591 (625)
T ss_pred HHHHHHcC
Confidence 87776654
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=7.6e-15 Score=139.86 Aligned_cols=297 Identities=18% Similarity=0.218 Sum_probs=205.1
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH--HcCCHH-HHHHHHHHHHHcCC-------------------CCC
Q 003449 185 KEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYA--SNGRYR-EAVMVFKKMEEEGC-------------------KPT 242 (819)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~-~A~~~~~~m~~~~~-------------------~~~ 242 (819)
..|.+.++.-+|+.|.+.|.+.+..+--.|.+.-+ ...+.- .-.+.|-.|...|- +-+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT 206 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKT 206 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCC
Confidence 46777788888888888887777777666665433 222211 12334444444331 235
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 003449 243 LITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLD 322 (819)
Q Consensus 243 ~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 322 (819)
..+|..||.++|+-. ..+.|.+++++......+.+..+||.+|.+-. +....++..+|....+.||..|+|+++.
T Consensus 207 ~et~s~mI~Gl~K~~-~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFS-SLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred chhHHHHHHHHHHHH-hHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 667888888888887 78888888888888777888888888876532 2223678888888888888888888888
Q ss_pred HHHhCCCHHHH----HHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHH-HHHHHHHHHH----cCCC---C-CHHHHHH
Q 003449 323 VYGKCRRPKEA----MQVLREMKINGCLPSIVTYNSLISAYARDGLLEE-AMELKTQMVE----IGIT---P-DVFTYTT 389 (819)
Q Consensus 323 ~~~~~g~~~~A----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~---p-d~~~~~~ 389 (819)
+..+.|+++.| .+++.+|++-|+.|...+|..+|..+++.++..+ |..++.++.. +.++ | |...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 88888877654 5677778888888888888888888888777644 3444444332 2222 2 4456667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003449 390 LLSGFEKAGKDESAMKVFEEMRSAG----CKPN---ICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLA 462 (819)
Q Consensus 390 l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 462 (819)
.+..|....+.+.|.++..-+.... +.++ ..-|..+....|.....+.....++.+.-+-.-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 7777888888888887776655321 1222 23455666777777778888888888877766777777778888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCC
Q 003449 463 VFGQNGMDSEVSGVFKEMKRAGFI 486 (819)
Q Consensus 463 ~~~~~g~~~~a~~~~~~m~~~~~~ 486 (819)
+..-.|.++-.-+++.++...|..
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhh
Confidence 888888888888888877776543
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1e-13 Score=133.95 Aligned_cols=474 Identities=12% Similarity=0.087 Sum_probs=348.3
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003449 316 TYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFE 395 (819)
Q Consensus 316 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~ 395 (819)
.|-...+--..++++..|..+|++....+ ..+...|-..+..-.++..+..|..++++.+..-...|.. |--.+.+-.
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE 152 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHH
Confidence 33333333344667778888998887763 4577778888888888999999999999988753333333 333344445
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003449 396 KAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSG 475 (819)
Q Consensus 396 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 475 (819)
..|++..|.++|+...+- .|+...|++.|+.-.+.+.++.|..++++..-. .|++.+|-.....-.++|....+..
T Consensus 153 ~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHH
Confidence 679999999999988764 789999999999999999999999999998764 6899999999999999999999999
Q ss_pred HHHHHHHC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH------
Q 003449 476 VFKEMKRA-GF-IPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTP-DLSTYNAVLAALARGGMWEQSEKI------ 546 (819)
Q Consensus 476 ~~~~m~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~------ 546 (819)
+|+...+. |- ..+...|.+.+..-.++..++.|.-+|+-.++.=..- ....|..+...-.+-|+.......
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 99887764 11 1122345555555556778899999999888762221 245566666555555654433332
Q ss_pred --HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHH--------HHHHhcCCCHHHHHH
Q 003449 547 --FAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHA-VLLKTL--------ILVYSKSDLLMDTER 615 (819)
Q Consensus 547 --~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l--------~~~~~~~~~~~~a~~ 615 (819)
|+.+...+ +.|..+|-..+..-...|+.+...++|+.++..-.+... ..+... +..-....+.+.+.+
T Consensus 309 ~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 309 FQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34444432 667888888888888899999999999999876433221 112111 112235688999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003449 616 AFLELKKKGFSPDIPTLNAMISIY----GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREIL 691 (819)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 691 (819)
+|+..++. ++....++.-+--.| .++.++..|.+++...+ |.-|...++...|..-.+.++++.+..++++.+
T Consensus 388 vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 388 VYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999884 444555554444433 57889999999999877 567999999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003449 692 AKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG-LVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQN 770 (819)
Q Consensus 692 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 770 (819)
+-+. -+-.+|...+..-...|+.+.|..+|+-++... +.-....|...+..-...|.++.|..+|+++++. .+...
T Consensus 465 e~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~k 541 (677)
T KOG1915|consen 465 EFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVK 541 (677)
T ss_pred hcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccch
Confidence 8653 367888888888889999999999999998752 2222346778888888999999999999999984 45566
Q ss_pred HHHHHHHHHH-----hcC-----------cHHHHHHHHHHhhhcCCCC
Q 003449 771 TYNSIVDGYC-----KLN-----------QRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 771 ~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~~p~~ 802 (819)
+|.+.+..-. +.| ....|.++|+++...--+.
T Consensus 542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~ 589 (677)
T KOG1915|consen 542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKES 589 (677)
T ss_pred HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhc
Confidence 8888776654 445 5778999999987654433
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=9.9e-16 Score=146.65 Aligned_cols=489 Identities=13% Similarity=0.113 Sum_probs=286.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhH-HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHH
Q 003449 286 ISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTY-NALLDVYGKCRRPKEAMQVLREMKINGCLPS----IVTYNSLISAYA 360 (819)
Q Consensus 286 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~ 360 (819)
...|.....+.+|+..++-+++...-|+.-.. -.+-..+.+..++.+|++.++.....-...+ +...+.+.-.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 33444555566666666666555444444322 2233445566666666666665544311111 223334444455
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--------HHHHHHHHcc
Q 003449 361 RDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTF--------NALIKMHGNR 432 (819)
Q Consensus 361 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~ 432 (819)
+.|.++.|+..|+...+. .|+..+-..|+-++...|+-++..+.|.+|+.....+|..-| ..|+.-..+.
T Consensus 288 q~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred ecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 666666666666665553 455554444454555556666666666666654333333211 1111111111
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHH----HHHHHHHHHhcCCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003449 433 GNFVEMMKVFDEINKCNCKPDIVT----WNTLLAVFGQNGMD----SEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGS 504 (819)
Q Consensus 433 g~~~~A~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~----~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 504 (819)
..++.|.+.+ +.+..- -..+|.-- -.-++ +-.++.++.-+.... -...-..-...+.+.|+
T Consensus 366 -------d~lk~~ek~~-ka~aek~i~ta~kiiapv-i~~~fa~g~dwcle~lk~s~~~~l--a~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 366 -------DHLKNMEKEN-KADAEKAIITAAKIIAPV-IAPDFAAGCDWCLESLKASQHAEL--AIDLEINKAGELLKNGD 434 (840)
T ss_pred -------HHHHHHHHhh-hhhHHHHHHHHHHHhccc-cccchhcccHHHHHHHHHhhhhhh--hhhhhhhHHHHHHhccC
Confidence 1111221111 111110 00000000 00000 111111111100000 00000112345778899
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 003449 505 FDQAMSIYKRMLEAGVTPDLSTYNAVLA-ALAR-GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALS 582 (819)
Q Consensus 505 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 582 (819)
++.|.++++-+.+..-+.-...-+.|-. .|.+ ..++.+|..+-+.....+ .-+......-.+.-...|++++|.+.|
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFY 513 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHH
Confidence 9999999988877643322222222222 2222 446777777776665432 223332222223334578999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 003449 583 EEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTP 662 (819)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 662 (819)
++.+... ......+..++..+...|++++|++.|-++... +..+...+..+.+.|....+..+|++++.+.... ++.
T Consensus 514 keal~nd-asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~ 590 (840)
T KOG2003|consen 514 KEALNND-ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPN 590 (840)
T ss_pred HHHHcCc-hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCC
Confidence 9998765 233444555666788899999999999887643 1347788888999999999999999999877664 577
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003449 663 SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVA 742 (819)
Q Consensus 663 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 742 (819)
|+.++..+...|-+.|+-..|...+-+--.. ++-+..+...|...|....-+++|+.+|++..- +.|+..-|-.++.
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmia 667 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIA 667 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHH
Confidence 8889999999999999999998887665554 455788888888888888889999999998765 7899988886665
Q ss_pred H-HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhh
Q 003449 743 S-YAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLS 796 (819)
Q Consensus 743 ~-~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 796 (819)
. +.+.|++.+|.++|+....+ +.-|...+.-|++.+...|- .+|.++.+++.
T Consensus 668 sc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~kle 720 (840)
T KOG2003|consen 668 SCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADKLE 720 (840)
T ss_pred HHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHHHH
Confidence 4 55789999999999999875 44488888888888877765 35555555543
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=7.2e-15 Score=140.82 Aligned_cols=485 Identities=13% Similarity=0.096 Sum_probs=306.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHhCCCCCC----H
Q 003449 205 DIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNV-ILNVYGKMGMPWNKIMALVEGMKSAGVKPD----S 279 (819)
Q Consensus 205 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~----~ 279 (819)
.....+...|..-|..+....+|+..|+-+.+...-|+...... +.+.+.+.. .+.+|+++|......-...+ .
T Consensus 198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr-~fskaikfyrmaldqvpsink~~ri 276 (840)
T KOG2003|consen 198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKR-EFSKAIKFYRMALDQVPSINKDMRI 276 (840)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehh-hHHHHHHHHHHHHhhccccchhhHH
Confidence 34445666677778888888999999998887766666554432 445566666 78999999887775432222 3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHh--------h
Q 003449 280 YTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIV--------T 351 (819)
Q Consensus 280 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~--------~ 351 (819)
.+.+.+...+.+.|.++.|...|+...+. .|+..+--.|+-++..-|+.++..+.|.+|..-...+|.. .
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 34555556688999999999999998876 6787776667777778899999999999987642222221 1
Q ss_pred HHHHHHHHHHcCCH-----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003449 352 YNSLISAYARDGLL-----------EEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNIC 420 (819)
Q Consensus 352 ~~~li~~~~~~g~~-----------~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 420 (819)
-..|+.--.+...+ ++++-.-.+++.--+.||-. . | .+-+.+.++.-... +.-..
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa---~--------g-~dwcle~lk~s~~~--~la~d 420 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA---A--------G-CDWCLESLKASQHA--ELAID 420 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh---c--------c-cHHHHHHHHHhhhh--hhhhh
Confidence 12222222221111 11111111111111112111 0 0 01111111111100 00001
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003449 421 TFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQ--NGMDSEVSGVFKEMKRAGFIPERDTFNTLISA 498 (819)
Q Consensus 421 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 498 (819)
.-..-...|.+.|+++.|+++++-+.+..-+.....-+.|...+.. -.++.+|...-+..+... .-+......-...
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~ 499 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNI 499 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCce
Confidence 1111233567889999999998888765434334444444433333 335666666655554332 1233333333334
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 003449 499 YSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQM 578 (819)
Q Consensus 499 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 578 (819)
....|++++|.+.|++.+...-.- ....-.+.-.+-..|++++|++.|-++... +..+......+...|....+..+|
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHH
Confidence 456789999999999988753221 112222223466788999999988776542 234666777788888888899999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 003449 579 LALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS 658 (819)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 658 (819)
++++.+.... ++.++.++..+...|.+.|+-..|.+.+-+--.. ++.+..+...|..-|....-+++++..|++..-
T Consensus 578 ie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal- 654 (840)
T KOG2003|consen 578 IELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL- 654 (840)
T ss_pred HHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-
Confidence 9998887664 5778888899999999999988888776555443 355778888888888888888899998888765
Q ss_pred CCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003449 659 GFTPSLTTYNTLMYMY-SRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR 714 (819)
Q Consensus 659 ~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 714 (819)
+.|+..-|..++..| .+.|++++|.++++.+... ++.|...+..|++.+...|-
T Consensus 655 -iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 -IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred -cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 478888888777654 5688999999999888765 56678888888877776664
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=5.4e-12 Score=122.34 Aligned_cols=233 Identities=9% Similarity=0.125 Sum_probs=137.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHH--------HHHhcCCHHHHHHHHHHHHhCCCCC
Q 003449 488 ERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDL--STYNAVLA--------ALARGGMWEQSEKIFAEMKGGRCKP 557 (819)
Q Consensus 488 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~--------~~~~~g~~~~A~~~~~~m~~~~~~~ 557 (819)
|-.+|-..++.-...|+.+...++|++.+.. ++|-. ..|...|. .-....+.+.+.++|+..++. ++-
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCc
Confidence 4555555555555556666666666666553 22211 11111111 112356667777777766653 344
Q ss_pred CHHHHHHHHHHH----HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003449 558 NELTYSSLLHAY----ANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLN 633 (819)
Q Consensus 558 ~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 633 (819)
...|+..+--.| .++.++..|.+++...+. .-|...++...+..-.+.++++.+..+|.+.++-++. +..+|.
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~ 475 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWS 475 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHH
Confidence 444554443333 346667777777666654 3566667777777777777777777777777766532 566677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--
Q 003449 634 AMISIYGRRQMVAKTNEILHFMNDSGF-TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC-- 710 (819)
Q Consensus 634 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-- 710 (819)
..+..-...|+.+.|..+|+....... .-....|.+.|+.-...|.+++|..+++++++. .+...+|..++..-.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~ 553 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASA 553 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccc
Confidence 776666777778888888877776421 112344666666667777888888888887765 234446655554333
Q ss_pred ---hcC-----------CHHHHHHHHHHHHH
Q 003449 711 ---RNG-----------RMKEASRIFSEMRD 727 (819)
Q Consensus 711 ---~~g-----------~~~~A~~~~~~~~~ 727 (819)
+.| ++..|.++|+++..
T Consensus 554 ~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 554 SEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred cccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 233 45667777776654
No 37
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.1e-12 Score=130.39 Aligned_cols=278 Identities=15% Similarity=0.067 Sum_probs=224.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003449 521 TPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTL 600 (819)
Q Consensus 521 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 600 (819)
.-+........+.+...+++.+..+++++..+.. ++....+..-|.++...|+..+-..+-.++++.. +.....|..+
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 3456666667777888999999999999998864 5666677777778888999888888888887753 6678889999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 003449 601 ILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENF 680 (819)
Q Consensus 601 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 680 (819)
+-.|...|+..+|++.|.+....+. --...|-.+...|+-.|..++|+..+..+.+.- +-...-+-.+.--|.+.+++
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccH
Confidence 9999999999999999999875431 135679999999999999999999888877641 11112223345557889999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCChHHHH
Q 003449 681 ARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS--GLVP----DVITYNTFVASYAADSLFVEAL 754 (819)
Q Consensus 681 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p----~~~~~~~l~~~~~~~g~~~~A~ 754 (819)
+.|.++|.++... .+-|+..++-+.....+.+.+.+|..+|+..+.. .+.+ -..+++.++.+|.+.+++++|+
T Consensus 397 kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999999999875 3447888898888888889999999999998842 1111 2346889999999999999999
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 755 DVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 755 ~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
..+++++.. .| |..++.+++..|...|+++.|++.|++++.+.|++...
T Consensus 476 ~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~ 525 (611)
T KOG1173|consen 476 DYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFI 525 (611)
T ss_pred HHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHH
Confidence 999999984 55 88999999999999999999999999999999998433
No 38
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.68 E-value=8.1e-10 Score=111.67 Aligned_cols=507 Identities=12% Similarity=0.109 Sum_probs=291.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 003449 280 YTFNTLISCCRRGSLHEEAAGVFEEMKLA-GFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISA 358 (819)
Q Consensus 280 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 358 (819)
.+|...+..+.++|++......|+..+.. .+.-....|...+......|-++-+..++++..+. +...-+..|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 45666666666677777777777666554 12222334555566555666666777777776543 33335556666
Q ss_pred HHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 003449 359 YARDGLLEEAMELKTQMVEIG------ITPDVFTYTTLLSGFEKAGKDE---SAMKVFEEMRSAGCKPN--ICTFNALIK 427 (819)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~g------~~pd~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~--~~~~~~l~~ 427 (819)
+++.+++++|.+.+...+... .+.+-..|.-+....++.-+.- ....+++.+..+ -+| ...|++|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 667777777766666654321 1223334444444443332221 223333333332 122 346677777
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----------------cC------ChHHHHHHHHHHHHCCC
Q 003449 428 MHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQ----------------NG------MDSEVSGVFKEMKRAGF 485 (819)
Q Consensus 428 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----------------~g------~~~~a~~~~~~m~~~~~ 485 (819)
.|.+.|.+++|..+|++.... ..++.-+..+.++|.+ .| +.+-...-|+.+.....
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 777777777777777766543 2222223333333321 11 11122333333333211
Q ss_pred -----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003449 486 -----------IPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTP------DLSTYNAVLAALARGGMWEQSEKIFA 548 (819)
Q Consensus 486 -----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 548 (819)
+-+...|..-+ -+..|+..+-...|.+.... +.| -...|..+.+.|-..|+++.|..+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 11222232222 22346677777777777764 111 23557788888999999999999999
Q ss_pred HHHhCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC----------C-------CHHHHHHHHHHHhcCC
Q 003449 549 EMKGGRCKPN---ELTYSSLLHAYANGREIDQMLALSEEIYSGIIE----------P-------HAVLLKTLILVYSKSD 608 (819)
Q Consensus 549 ~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~~~~~ 608 (819)
+..+-..+-- ..+|..-...=.+..+++.|+++.+......-. | +..++...++.....|
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 8876543221 223444444445677888888888876542211 1 2234555666666778
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHh---cCCHHHHH
Q 003449 609 LLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLT-TYNTLMYMYSR---SENFARAE 684 (819)
Q Consensus 609 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~---~g~~~~A~ 684 (819)
-++....+|+.+++..+. .+......+..+..+.-++++.+++++-...--.|+.. .|++.+.-+.+ ...++.|.
T Consensus 492 tfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred cHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 888899999999886543 44444444455566777888888888876654445553 46666655543 34688999
Q ss_pred HHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHH
Q 003449 685 DVLREILAKGIKPDII--SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV--ITYNTFVASYAADSLFVEALDVVRYM 760 (819)
Q Consensus 685 ~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 760 (819)
.+|++.++ |++|... .|......--+.|-...|..+++++... +.+.. ..|+.++.--...=-.....++|+++
T Consensus 571 dLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYeka 648 (835)
T KOG2047|consen 571 DLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKA 648 (835)
T ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Confidence 99999998 5666532 2222223334567788888888887653 33322 25665555444333345667788888
Q ss_pred HHcCCCCCH---HHHHHHHHHHHhcCcHHHHHHHHHHhhhc-CCCC
Q 003449 761 IKQGCKPNQ---NTYNSIVDGYCKLNQRYEAITFVNNLSKL-DPHV 802 (819)
Q Consensus 761 ~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~ 802 (819)
++. -||. ......++.-++.|..+.|+.++....+. +|..
T Consensus 649 Ie~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~ 692 (835)
T KOG2047|consen 649 IES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRV 692 (835)
T ss_pred HHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcC
Confidence 873 5543 34446666677889999998888887776 4443
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=3.7e-13 Score=130.96 Aligned_cols=224 Identities=11% Similarity=0.018 Sum_probs=170.5
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003449 570 ANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTN 649 (819)
Q Consensus 570 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 649 (819)
.-.|+.-.|..-++..+... +.+...|..+..+|...++-++....|+...+.+.. +..+|..-...+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 34677788888888887765 333334777778888888889999999988876533 5566666666667778899999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003449 650 EILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG 729 (819)
Q Consensus 650 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 729 (819)
.-|++.+... +-+...|..+.-+..+.+.++++...|++.++. ++-.+..|+.....+..++++++|.+.|+..++
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 9999988764 445566777777778888999999999999876 555688999999999999999999999999887
Q ss_pred CCCC-------HHHHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcC
Q 003449 730 LVPD-------VITYN--TFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLD 799 (819)
Q Consensus 730 ~~p~-------~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 799 (819)
+.|+ ...+. .++ .+.-.+++..|+++++++++ +.| ....|..++......|+.++|+++|++...+.
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3443 22221 222 12244889999999999998 567 56778899999999999999999999988775
Q ss_pred CCC
Q 003449 800 PHV 802 (819)
Q Consensus 800 p~~ 802 (819)
..-
T Consensus 568 rt~ 570 (606)
T KOG0547|consen 568 RTE 570 (606)
T ss_pred HhH
Confidence 443
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.5e-12 Score=122.20 Aligned_cols=384 Identities=14% Similarity=0.055 Sum_probs=273.7
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-
Q 003449 414 GCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTF- 492 (819)
Q Consensus 414 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~- 492 (819)
+...|...+......+.+.|....|++.|.+....- +-.=..|-.|.... .+.+. ...... +...+...+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~----~~~l~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEI----LSILVV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHH----HHHHHh-cCcccchHHH
Confidence 344566666666666778888999999998877541 22223333332221 22221 111211 122122211
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 003449 493 -NTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRC--KPNELTYSSLLHAY 569 (819)
Q Consensus 493 -~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~l~~~~ 569 (819)
-.+..++....+.+++.+-.......|+.-+...-+....+.....++++|+.+|+++.+.+. -.|..+|+.++-.
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv- 308 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV- 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH-
Confidence 234556667778888988888888888876666666666677788999999999999987641 1345566665533
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003449 570 ANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTN 649 (819)
Q Consensus 570 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 649 (819)
+..+ ..+..+.+-...-.+-.+.+...+++.|.-.++.++|...|++.++.+.. ...+|+.+.+-|....+...|.
T Consensus 309 -~~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 309 -KNDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred -Hhhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 2222 12222222222222445567777888899999999999999999987522 5678999999999999999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003449 650 EILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG 729 (819)
Q Consensus 650 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 729 (819)
+-++.+.+.. +-|-..|-.++++|.-.+...-|+-+|+++.... +-|...|.+|+.+|.+.++.++|++.|++....|
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 9999999875 6688899999999999999999999999999863 3379999999999999999999999999999865
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCC
Q 003449 730 LVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ----GCKPN--QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 730 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 803 (819)
-. +...+..++..|-+.++.++|...+++-++. |...+ ..+..-|+..+.+.+++++|..+..++...++.
T Consensus 463 dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e-- 539 (559)
T KOG1155|consen 463 DT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE-- 539 (559)
T ss_pred cc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch--
Confidence 33 5678999999999999999999999988762 32222 223334677788999999999999999887443
Q ss_pred HHHHHHHHHHHHh
Q 003449 804 KELECKLSDRIAK 816 (819)
Q Consensus 804 ~~~~~~l~~~l~~ 816 (819)
...-..|+..+++
T Consensus 540 ~eeak~LlReir~ 552 (559)
T KOG1155|consen 540 CEEAKALLREIRK 552 (559)
T ss_pred HHHHHHHHHHHHH
Confidence 3344556665554
No 41
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.67 E-value=5.7e-10 Score=112.75 Aligned_cols=546 Identities=12% Similarity=0.126 Sum_probs=343.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003449 208 VYAYTSLITTYASNGRYREAVMVFKKMEEE-GCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLI 286 (819)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll 286 (819)
+.+|-..+..+.++|+...-+..|++.+.. -+......|...+......| -.+-+..++++-.+- +...-+-.+
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~-lPets~rvyrRYLk~----~P~~~eeyi 176 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHG-LPETSIRVYRRYLKV----APEAREEYI 176 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCC-ChHHHHHHHHHHHhc----CHHHHHHHH
Confidence 357777788888999999999999887754 22334557888888888888 578888888888763 334467778
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCC------CCCCHHhHHHHHHHHHhCCCHH---HHHHHHHHHHHCCCCCC--HhhHHHH
Q 003449 287 SCCRRGSLHEEAAGVFEEMKLAG------FSPDKVTYNALLDVYGKCRRPK---EAMQVLREMKINGCLPS--IVTYNSL 355 (819)
Q Consensus 287 ~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~g~~~~--~~~~~~l 355 (819)
..+++.++.++|.+.+...+... .+.+...|..+-+...+.-+.- ....+++.+... -+| -..|+.|
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SL 254 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSL 254 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHH
Confidence 88889999999999888876541 1334555666655555443322 233445544432 233 3468899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCC
Q 003449 356 ISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMR-SAGCKPNICTFNALIKMHGNRGN 434 (819)
Q Consensus 356 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~ 434 (819)
..-|.+.|.+++|.++|++.... ...+.-|..+..+|+.-....-+..+= ... +.+-.-+.. +
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~-------------d 318 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDV-------------D 318 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------------h
Confidence 99999999999999999988774 223444556666665432221111111 010 111111111 1
Q ss_pred HHHHHHHHHHHhhC-----------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 003449 435 FVEMMKVFDEINKC-----------NCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPE------RDTFNTLIS 497 (819)
Q Consensus 435 ~~~A~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~------~~~~~~l~~ 497 (819)
++-.+.-|+.+... .-+.++..|..-+. +..|+..+....+.+..+. +.|. ...|..+.+
T Consensus 319 l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~fak 395 (835)
T KOG2047|consen 319 LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAK 395 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHH
Confidence 22222223222221 11334455543332 3456677777777777664 2221 235777888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----------CC------C
Q 003449 498 AYSRCGSFDQAMSIYKRMLEAGVTPD---LSTYNAVLAALARGGMWEQSEKIFAEMKGGR-----------CK------P 557 (819)
Q Consensus 498 ~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-----------~~------~ 557 (819)
.|-..|+++.|..+|++..+...+-- ..+|......-.+..+++.|+++++...-.. .+ -
T Consensus 396 lYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr 475 (835)
T KOG2047|consen 396 LYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR 475 (835)
T ss_pred HHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH
Confidence 88889999999999988887543321 3566666777777888888888887765321 11 1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 003449 558 NELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDI-PTLNAMI 636 (819)
Q Consensus 558 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~ 636 (819)
+...|...++.-...|-++....+|+.+++..+. ++......+..+....-++++.++|++-+..-.-|++ ..|+..+
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 2234555555555678888888899988876543 3333344444555566678888888776654333443 3455555
Q ss_pred HHHHh---cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 003449 637 SIYGR---RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYM--YSRSENFARAEDVLREILAKGIKPD--IISYNTVIFAY 709 (819)
Q Consensus 637 ~~~~~---~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~ 709 (819)
.-+.+ ...++.|..+|++..+ |.+|...-+-.++.+ -.+.|-...|+++++++... +++. ..+||..|.--
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~ka 632 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKA 632 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHH
Confidence 44432 3468999999999998 667655433333332 34567888899999997754 3433 46777776544
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCc
Q 003449 710 CRNGRMKEASRIFSEMRDSGLVPDVIT---YNTFVASYAADSLFVEALDVVRYMIKQGCKP--NQNTYNSIVDGYCKLNQ 784 (819)
Q Consensus 710 ~~~g~~~~A~~~~~~~~~~g~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~ 784 (819)
...=-+...+.+|++.++. -||..+ ...++..-++.|.++.|..+|.-..+. ..| +...|...-..-.+.|+
T Consensus 633 ae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 633 AEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCC
Confidence 4433455667888888874 556543 345556667889999999999888775 455 67788888888888888
Q ss_pred H
Q 003449 785 R 785 (819)
Q Consensus 785 ~ 785 (819)
-
T Consensus 710 e 710 (835)
T KOG2047|consen 710 E 710 (835)
T ss_pred H
Confidence 3
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5.4e-11 Score=115.45 Aligned_cols=366 Identities=14% Similarity=0.086 Sum_probs=238.2
Q ss_pred CCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--H
Q 003449 309 GFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVF--T 386 (819)
Q Consensus 309 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--~ 386 (819)
+...|...+-.....+-+.|....|++.|.+.... .+-.-.+|..|.... .+.+.+. .... |...|.. .
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~----~l~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILS----ILVV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHH----HHHh-cCcccchHHH
Confidence 33445544444444566778899999999887654 223444444443322 2222222 2221 2222221 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC---CHHHHHHHHHH
Q 003449 387 YTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKP---DIVTWNTLLAV 463 (819)
Q Consensus 387 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~ 463 (819)
-.-+..++....+.+++.+-.+.....|++.....-+....+.-...++|+|+.+|+++.+.. +- |..+|..++-+
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHH
Confidence 122445566667888888888888888887766666666667778889999999999998773 22 44555554432
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003449 464 FGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQS 543 (819)
Q Consensus 464 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 543 (819)
- +.... +..+..-.-.--+-...|+..+.+.|+-.++.+.|..+|++.++.+.. ....|+.+.+-|...++...|
T Consensus 309 ~--~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 309 K--NDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred H--hhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHH
Confidence 2 22111 111111111111224567778888888888899999999988887554 567788888888888888889
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 003449 544 EKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKK 623 (819)
Q Consensus 544 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 623 (819)
++.++...+-+ +-|-..|..|.++|.-.+-..=|+-.|++..... +.|...+..++.+|.+.++.++|++.|......
T Consensus 384 i~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 384 IESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 99888888764 5677788888888888888888888888887754 667788888888888888888888888888776
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003449 624 GFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS----GFTPS--LTTYNTLMYMYSRSENFARAEDVLREILA 692 (819)
Q Consensus 624 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 692 (819)
|-. +...+..|+..|.+.++.++|...+++-.+. |...+ .....-|..-+.+.+++++|..+......
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 522 4567788888888888888888777766542 22111 11222244455666777766665555443
No 43
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.65 E-value=2.8e-12 Score=133.68 Aligned_cols=246 Identities=15% Similarity=0.138 Sum_probs=128.9
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC
Q 003449 199 LHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPD 278 (819)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~ 278 (819)
+...|+.|+-.+|..+|..||..|+.+.|- +|.-|.-.....+...++.++.+....+ +.+.+. .|-
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~An-d~Enpk-----------ep~ 82 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEAN-DAENPK-----------EPL 82 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccc-cccCCC-----------CCc
Confidence 344455566666666666666666665555 5555554444445555666655555555 333222 455
Q ss_pred HHHHHHHHHHHHcCCCHHH-----------------------HHHHHHHHHHC-CCCCCHHhHHHHHHHHHhCCCHHHHH
Q 003449 279 SYTFNTLISCCRRGSLHEE-----------------------AAGVFEEMKLA-GFSPDKVTYNALLDVYGKCRRPKEAM 334 (819)
Q Consensus 279 ~~~~~~ll~~~~~~g~~~~-----------------------A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 334 (819)
+.||..|+.+|...||... -..++..+... ++-||.. ..+....-.|-++.++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLL 159 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHH
Confidence 5566666666666665543 22222111110 1112221 1122223334444444
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003449 335 QVLREMKINGCLPSIVTYNSLISAYARD-GLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSA 413 (819)
Q Consensus 335 ~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 413 (819)
+++..+...... . +....++-.... ..+++-..+.....+ .|+..+|..+++.-...|+.+.|..++.+|++.
T Consensus 160 kll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 160 KLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 444443211000 0 011112222221 223343333333333 467777777777777777777777777777777
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 003449 414 GCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGM 469 (819)
Q Consensus 414 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 469 (819)
|++.+..-|-.|+-+ .++...+..+++-|...|+.|+..|+...+..+..+|.
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 777766655555544 66667777777777777777777777776666666554
No 44
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.65 E-value=9.6e-11 Score=121.17 Aligned_cols=440 Identities=13% Similarity=0.062 Sum_probs=245.6
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003449 346 LPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNAL 425 (819)
Q Consensus 346 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 425 (819)
..+...|..|.-+....|+++.+.+.|++....-+. ....|..+...+...|....|..++++.......|+..+...+
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 345556666666667777777777777776654222 3445666666667777777777777765544322332222222
Q ss_pred H-HHHH-ccCCHHHHHHHHHHHhhC--C--CCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHHCCCCCC
Q 003449 426 I-KMHG-NRGNFVEMMKVFDEINKC--N--CKPDIVTWNTLLAVFGQN-----------GMDSEVSGVFKEMKRAGFIPE 488 (819)
Q Consensus 426 ~-~~~~-~~g~~~~A~~~~~~~~~~--~--~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~ 488 (819)
+ ..|. +.+.+++++.+-.++... + -......|..+.-+|... ....++++.+++..+.+.. |
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-D 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-C
Confidence 2 2222 445555555555554431 1 011233333333333321 1223455666666555433 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003449 489 RDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHA 568 (819)
Q Consensus 489 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 568 (819)
.....-+.--|+..++++.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+.....- .-|......-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhh
Confidence 233333333555666777777777777666444566666666666666777777777766655431 1111111111111
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCChH
Q 003449 569 YANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKK--KGFSPDIPTLNAMISIYGRRQMVA 646 (819)
Q Consensus 569 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~ 646 (819)
-..-++.++++.....++..- ...- .....++-....+....+.- ......+.++..+....... ..
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~w--------e~~~-~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~--~~ 625 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALW--------EAEY-GVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ--LK 625 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHH--------Hhhh-hHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh--hh
Confidence 222455555554444433210 0000 00000010111111111110 00011122222222211111 11
Q ss_pred HHHHHHHHHhhCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003449 647 KTNEILHFMNDSGFT--PS------LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEA 718 (819)
Q Consensus 647 ~A~~~~~~~~~~~~~--p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 718 (819)
.+..-.. +...... |+ ...|......+.+.++.++|...+.++.+. ..-....|......+...|..++|
T Consensus 626 ~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 626 SAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred hcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHH
Confidence 1100000 1111111 22 223556677788999999999999888875 234677888888889999999999
Q ss_pred HHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHH--HHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003449 719 SRIFSEMRDSGLVPDVI-TYNTFVASYAADSLFVEALD--VVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNN 794 (819)
Q Consensus 719 ~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~--~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 794 (819)
.+.|..... +.|+.+ ....++.++...|+..-|.. ++..+++ +.| +...|..++..+.+.|+.++|.+.|.-
T Consensus 704 ~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 704 KEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 999999887 667654 77899999999998777777 9999998 567 899999999999999999999999999
Q ss_pred hhhcCCCCCHH
Q 003449 795 LSKLDPHVTKE 805 (819)
Q Consensus 795 ~~~~~p~~~~~ 805 (819)
+.++++.++..
T Consensus 780 a~qLe~S~PV~ 790 (799)
T KOG4162|consen 780 ALQLEESNPVL 790 (799)
T ss_pred HHhhccCCCcc
Confidence 99999887654
No 45
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=1.1e-11 Score=115.58 Aligned_cols=498 Identities=14% Similarity=0.107 Sum_probs=307.3
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHH
Q 003449 287 SCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLE 366 (819)
Q Consensus 287 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 366 (819)
.-+....++..|..+++.-...+-+-...+---+..++...|++++|..++.-+.+. ..++...+..|...+.-.|.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHH
Confidence 334556778888887776654432222223333455677889999999999887765 4566777777888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003449 367 EAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEIN 446 (819)
Q Consensus 367 ~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 446 (819)
+|..+..+..+ +......|+....+.++-++-..+.+.+... ..-..+|.......-.+.+|++++.++.
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877665432 3344445556666778877777776666542 1223345555555556889999999887
Q ss_pred hCCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 003449 447 KCNCKPDIVTWNTLL-AVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLS 525 (819)
Q Consensus 447 ~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 525 (819)
.. .|+-...|..+ -.|.+..-++-+.++++...+. ++.+....+..+....+.=.-..|.+-.+.+...+-. .
T Consensus 179 ~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~-- 252 (557)
T KOG3785|consen 179 QD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E-- 252 (557)
T ss_pred hc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c--
Confidence 65 45555555443 4567788888888888877765 3334444555444444433333344444444443211 1
Q ss_pred HHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003449 526 TYNAVLAALARG-----GMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTL 600 (819)
Q Consensus 526 ~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 600 (819)
-..+.-+++. ..-+.|++++-.+.+. .|. .-..|+--|.+++++.+|..+.+++.- ..|...++..+
T Consensus 253 --~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgv 324 (557)
T KOG3785|consen 253 --YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGV 324 (557)
T ss_pred --chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHH
Confidence 1223333433 2347788887776653 332 334556668889999999988877643 23444444444
Q ss_pred HHH-----HhcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003449 601 ILV-----YSKSDLLMDTERAFLELKKKGFSPDI-PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMY 674 (819)
Q Consensus 601 ~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 674 (819)
..+ ......+.-|...|+..-+.+..-|. .--.+++..+.-..++++++-.+..+...-...|.+.+| +..++
T Consensus 325 v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk 403 (557)
T KOG3785|consen 325 VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAK 403 (557)
T ss_pred HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHH
Confidence 332 22233455677777766555544442 234556666666677899998888888765455555554 78899
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHH
Q 003449 675 SRSENFARAEDVLREILAKGIKPDIISY-NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVIT-YNTFVASYAADSLFVE 752 (819)
Q Consensus 675 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~ 752 (819)
+..|++.+|+++|-++....++ |..+| ..|+++|.++++.+-|.+++-++.. ..+... ...++..|.+.+.+--
T Consensus 404 ~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyy 479 (557)
T KOG3785|consen 404 LATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYY 479 (557)
T ss_pred HHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887655444 44454 4566899999999999887766532 223333 3355567889999988
Q ss_pred HHHHHHHHHHcCCCCCHHHHH-------HHHHHHHhc---CcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Q 003449 753 ALDVVRYMIKQGCKPNQNTYN-------SIVDGYCKL---NQRYEAITFVNNLSKLDPHVTKELECKLSDRIAK 816 (819)
Q Consensus 753 A~~~~~~~~~~g~~p~~~~~~-------~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~~ 816 (819)
|.+.+..+.. ..|++..|. .+...++.. |...+..+-.-.++...|+.....+.+++...++
T Consensus 480 aaKAFd~lE~--lDP~pEnWeGKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~nsq~E~mikvvrkwa~ 551 (557)
T KOG3785|consen 480 AAKAFDELEI--LDPTPENWEGKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPNSQCEFMIKVVRKWAE 551 (557)
T ss_pred HHHhhhHHHc--cCCCccccCCccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 8888888877 456655443 233333322 3344444444455566666655555555554443
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=1.8e-12 Score=136.19 Aligned_cols=289 Identities=11% Similarity=0.050 Sum_probs=180.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCCHHHH
Q 003449 501 RCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNE--LTYSSLLHAYANGREIDQM 578 (819)
Q Consensus 501 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~~~~a 578 (819)
..|+++.|.+.+....+.... ....+-....+..+.|+.+.|.+.+.+..+.. |+. .........+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 346666666666555443211 12223333445555666666666666655432 222 2222234555566666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCChHHHHHHHHH
Q 003449 579 LALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLN----AMISIYGRRQMVAKTNEILHF 654 (819)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~A~~~~~~ 654 (819)
...++.+.+.. +.+...+..+..++...|++++|.+.+..+.+.+.. +...+. .........+..+++.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 66666666654 444555666666666677777777777666665433 222221 111111222233333444544
Q ss_pred HhhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003449 655 MNDSG---FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIIS---YNTVIFAYCRNGRMKEASRIFSEMRDS 728 (819)
Q Consensus 655 ~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 728 (819)
+.+.. .+.+...+..++..+...|+.++|.+.+++..+.. ||... ...........++.+.+.+.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 44432 12377888889999999999999999999999863 33321 122222334457888999999988874
Q ss_pred CCCC-CH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc
Q 003449 729 GLVP-DV--ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 729 g~~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
.| |+ .....+++.+.+.|++++|.++++++......|+..++..++..+.+.|+.++|.+++++.+..
T Consensus 329 --~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 329 --VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred --CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44 33 5567999999999999999999995443336799988999999999999999999999997543
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=2.6e-12 Score=134.04 Aligned_cols=286 Identities=10% Similarity=0.065 Sum_probs=183.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHccCCHHHHH
Q 003449 502 CGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYS--SLLHAYANGREIDQML 579 (819)
Q Consensus 502 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 579 (819)
.|+++.|.+.+....+..-. ....|........+.|+++.|...+.++.+. .|+..... .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 35666665555544332111 1112222223335566666666666666543 33332222 2234455566666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHH
Q 003449 580 ALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDI-------PTLNAMISIYGRRQMVAKTNEIL 652 (819)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~ 652 (819)
..++++.+.. +.+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666665544 444555666666666666666666666666655433211 12222333333344455666666
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003449 653 HFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP 732 (819)
Q Consensus 653 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 732 (819)
+.+.+. .+.+......+...+...|+.++|.+++++..+. .++.... ++.+....++.+++.+.+++..+.. .-
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 665443 2557778888899999999999999999998874 4454322 2344456689999999999988753 22
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcC
Q 003449 733 DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLD 799 (819)
Q Consensus 733 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 799 (819)
|...+..++..+...|++++|.+.++++.+ ..|+...+..++..+.+.|+.++|...+++.+.+-
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 556778899999999999999999999998 57998888899999999999999999999987653
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=1.8e-13 Score=139.01 Aligned_cols=210 Identities=10% Similarity=-0.001 Sum_probs=164.5
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003449 591 EPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTL 670 (819)
Q Consensus 591 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 670 (819)
+..+.+|..++++|.-+++.+.|++.|++.++.+. -...+|+.+..-+.....+|.|...|+..+... +-+-..|..+
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGl 495 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGL 495 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhh
Confidence 44566666666666667777777777777665531 156677777777778888899988888877532 2233346667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003449 671 MYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLF 750 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 750 (819)
+-.|.+.++++.|+-.|+++.+-+. -+.+....+...+-+.|+.|+|+.+++++...... |+..-...+..+...+++
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcch
Confidence 7889999999999999999998542 25777778888899999999999999999875433 555666677889999999
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHH
Q 003449 751 VEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 751 ~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
++|+..++++.+ +.| +..++..++..|.+.|+.+.|+..+.-|.+++|....++
T Consensus 574 ~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i~ 628 (638)
T KOG1126|consen 574 VEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQIQ 628 (638)
T ss_pred HHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchhh
Confidence 999999999998 677 678888999999999999999999999999999876643
No 49
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.61 E-value=5.9e-12 Score=131.36 Aligned_cols=129 Identities=9% Similarity=-0.003 Sum_probs=78.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHH
Q 003449 668 NTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS--GLVPDVITYNTFVASYA 745 (819)
Q Consensus 668 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~~~~~ 745 (819)
+.++..++...+..+++..-++....-+ ...|..|++-++...+.+.|..+.++.... .+..|..-+..+.+.+.
T Consensus 463 ~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~ 539 (1088)
T KOG4318|consen 463 NQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ 539 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence 3445555555555565554444443211 256777788788888888888887777542 23344556667777777
Q ss_pred hcCChHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcC
Q 003449 746 ADSLFVEALDVVRYMIKQGC-KP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLD 799 (819)
Q Consensus 746 ~~g~~~~A~~~~~~~~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 799 (819)
+.+....+.++++++.+.-. .| -..+...+.+.....|+.+.-.+..+-+..++
T Consensus 540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslg 595 (1088)
T KOG4318|consen 540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLG 595 (1088)
T ss_pred HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhh
Confidence 88888888888887775311 22 13445566666667777666665555544443
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=5.3e-15 Score=147.53 Aligned_cols=260 Identities=15% Similarity=0.162 Sum_probs=107.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCC
Q 003449 530 VLAALARGGMWEQSEKIFAEMKGGRCKP-NELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSD 608 (819)
Q Consensus 530 l~~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 608 (819)
+...+.+.|++++|++++++......+| +...|..+.......++++.|...++++...+ +.+...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 3455566666666666664433332122 23333334444455666667777776666544 2244445555555 5677
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003449 609 LLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSG-FTPSLTTYNTLMYMYSRSENFARAEDVL 687 (819)
Q Consensus 609 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 687 (819)
++++|.+++....+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777666554 2455666777778888889999988888876532 3456777888888899999999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003449 688 REILAKGIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCK 766 (819)
Q Consensus 688 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 766 (819)
+++++. .| |......++..+...|+.+++.++++...+.. ..|+..+..++.++...|+.++|+.+++++.+. .
T Consensus 170 ~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~ 244 (280)
T PF13429_consen 170 RKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--N 244 (280)
T ss_dssp HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--S
T ss_pred HHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--c
Confidence 999886 34 57788888889999999999888888887753 335557788899999999999999999998874 4
Q ss_pred C-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc
Q 003449 767 P-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 767 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
| |+.+...+++++...|+.++|..+.+++.+.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 5 7888889999999999999999998887653
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.3e-11 Score=120.35 Aligned_cols=222 Identities=10% Similarity=0.050 Sum_probs=167.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHH
Q 003449 534 LARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDT 613 (819)
Q Consensus 534 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 613 (819)
+.-.|+.-.|..-|+..+.....++. .|-.+...|....+.++.+..|.+....+ +.+..+|..-++++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 44567888888888888876433322 26666777888889999999999888876 55666777778888888899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003449 614 ERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK 693 (819)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 693 (819)
..-|++.+.... .+...|-.+.-+..+.+.++++...|++..+. ++..+..|+.....+...+++++|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 999999887642 24566666766777888999999999998885 5777888999999999999999999999998864
Q ss_pred CCC-----CCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 694 GIK-----PDIIS--YNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 694 ~~~-----p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
... .+... .-.++..- -.+++..|..++.+..+ +.|.. ..|..|+..-.+.|+.++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 211 11111 12222222 23789999999999987 44433 4788999999999999999999998875
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.2e-10 Score=116.12 Aligned_cols=498 Identities=13% Similarity=0.077 Sum_probs=275.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003449 179 LISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGM 258 (819)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 258 (819)
+++-+..+.++..|.-+-+.+...+ .|+..-.-+..+|.-.|.+++|..+...-.-. ..|..+......++.+..
T Consensus 22 ~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk- 96 (611)
T KOG1173|consen 22 LVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLK- 96 (611)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHH-
Confidence 3333334445555555555554443 34444556677777777777777776554322 236666666777777766
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHH
Q 003449 259 PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLR 338 (819)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 338 (819)
+|++|..++..... .-+...|-.-=. ...-..+.+. ++.. .......+-.--..|....+.++|...|.
T Consensus 97 ~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~ar~~Y~ 165 (611)
T KOG1173|consen 97 EWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREEARDKYK 165 (611)
T ss_pred HHHHHHHHhcccch---hhcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHHHHHHHH
Confidence 67777776663211 001111000000 0000000000 0000 00001111111234555667777777777
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003449 339 EMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGI----TPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAG 414 (819)
Q Consensus 339 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 414 (819)
+.... |...+..+...- . ...-.+.+.|+.+..... .-|+.....+.........-+.....-++..-.+
T Consensus 166 ~Al~~----D~~c~Ea~~~lv-s-~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~ 239 (611)
T KOG1173|consen 166 EALLA----DAKCFEAFEKLV-S-AHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIG 239 (611)
T ss_pred HHHhc----chhhHHHHHHHH-H-HHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhh
Confidence 76543 333333322111 1 111112222222222110 1122222222221110000011111111111122
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 003449 415 CKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNT 494 (819)
Q Consensus 415 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 494 (819)
...+........+.+...+++.+..++++++.+.. ++....+..-|..+...|+..+-..+=.++++.- +-...+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 34456666677777888889999999999888764 5666677777778888888888887777887763 336678888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 003449 495 LISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGRE 574 (819)
Q Consensus 495 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 574 (819)
+.-.|...|+..+|++.|.+....+.. =...|-.+.+.|.-.|..|+|+..+...-+.- +-...-+.-+.--|...++
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhcc
Confidence 888888889999999999887764322 24678888888888899999988887765431 1111122233345777888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCChHHH
Q 003449 575 IDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKK--GFSP----DIPTLNAMISIYGRRQMVAKT 648 (819)
Q Consensus 575 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~A 648 (819)
.+-|.+.|.+..... +.++..++.++-+....+.+.+|...|+..+.. ...+ -..+++.|..+|.+.+.+++|
T Consensus 396 ~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 888888888877653 566777777777777778888888888776521 0011 223456666666666666666
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003449 649 NEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVI 706 (819)
Q Consensus 649 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 706 (819)
+..++...... +.+..++.+++..|...|+++.|.+.|.+.+. +.|+..+-..++
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL 529 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELL 529 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHH
Confidence 66666666542 45566666666666666666666666666655 345544433333
No 53
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=1.5e-11 Score=128.38 Aligned_cols=289 Identities=15% Similarity=0.080 Sum_probs=172.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChHHH
Q 003449 432 RGNFVEMMKVFDEINKCNCKPDIVT-WNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDT--FNTLISAYSRCGSFDQA 508 (819)
Q Consensus 432 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~l~~~~~~~g~~~~A 508 (819)
.|++++|.+.+....+.. +.... |.....+..+.|+++.|.+.+.++.+. .|+... .......+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 455555555554433321 11122 222223335556666666666665543 223221 11234566666777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHHHHh
Q 003449 509 MSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLL-HAYANGREIDQMLALSEEIYS 587 (819)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~ 587 (819)
.+.++.+.+.... +...+..+...|.+.|+|++|.+++..+.+.+..+ ......+- .++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~------------------ 232 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLEQQAW------------------ 232 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH------------------
Confidence 7777777665533 55666666677777777777777777776654322 11111110 000
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH
Q 003449 588 GIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTY 667 (819)
Q Consensus 588 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 667 (819)
..++.......+.+...++++.+.+. .+.+......++..+...|+.++|.+++++..+. +++....
T Consensus 233 ----------~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~ 299 (398)
T PRK10747 233 ----------IGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV 299 (398)
T ss_pred ----------HHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH
Confidence 01111111112223333334433322 1346677777888888888888888888888774 4555322
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003449 668 NTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD 747 (819)
Q Consensus 668 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 747 (819)
++.+....++.+++++..++..+.. +-|...+..+...|.+.|++++|.+.|+.+.+ ..|+...+..++.++.+.
T Consensus 300 --~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~ 374 (398)
T PRK10747 300 --LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRL 374 (398)
T ss_pred --HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHc
Confidence 2333445688888888888888763 33567778888888888888888888888887 578888888888888888
Q ss_pred CChHHHHHHHHHHHH
Q 003449 748 SLFVEALDVVRYMIK 762 (819)
Q Consensus 748 g~~~~A~~~~~~~~~ 762 (819)
|+.++|..++++...
T Consensus 375 g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 375 HKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHh
Confidence 888888888888765
No 54
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.58 E-value=9.2e-12 Score=130.85 Aligned_cols=292 Identities=11% Similarity=0.034 Sum_probs=145.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003449 432 RGNFVEMMKVFDEINKCNCKPD-IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMS 510 (819)
Q Consensus 432 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 510 (819)
.|+++.|.+.+.+..+. .|+ ...+-....++.+.|+.+.|.+.+++..+....+...........+...|+++.|.+
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 44555555554444332 122 222222334444445555555555554433211111222223455555666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHccCCHHHHHHHHHHHHhCC
Q 003449 511 IYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSL-LHAYANGREIDQMLALSEEIYSGI 589 (819)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~ 589 (819)
.++.+.+.... +...+..+...+.+.|++++|.+++..+.+.+.. +...+..+ ..++ .+
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~--~~---------------- 234 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE--IG---------------- 234 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH--HH----------------
Confidence 66666655432 4455555556666666666666666666655422 22111110 0000 00
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH
Q 003449 590 IEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGF---SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTT 666 (819)
Q Consensus 590 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 666 (819)
....+..+++...+..+.+... +.+...+..++..+...|+.++|.+++++..+.. |+...
T Consensus 235 --------------~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~ 298 (409)
T TIGR00540 235 --------------LLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRA 298 (409)
T ss_pred --------------HHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCccc
Confidence 0000011111112222222110 1255566666666667777777777777666642 33321
Q ss_pred ---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003449 667 ---YNTLMYMYSRSENFARAEDVLREILAKGIKPDI--ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFV 741 (819)
Q Consensus 667 ---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 741 (819)
...........++.+.+.+.+++..+.. +-|. ....++...|.+.|++++|.+.|+........|+...+..++
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La 377 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAA 377 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHH
Confidence 1111122233466677777777776642 2234 555677777777777777777777433333567777777777
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 003449 742 ASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 742 ~~~~~~g~~~~A~~~~~~~~~ 762 (819)
..+.+.|+.++|.+++++...
T Consensus 378 ~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777653
No 55
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=3e-08 Score=105.41 Aligned_cols=214 Identities=13% Similarity=0.134 Sum_probs=111.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--CCHHHHHH---------------------------HHHHHhcCC
Q 003449 558 NELTYSSLLHAYANGREIDQMLALSEEIYSGIIE--PHAVLLKT---------------------------LILVYSKSD 608 (819)
Q Consensus 558 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~---------------------------l~~~~~~~~ 608 (819)
|+...+.-+.++...+-..+-+++++++.-.... .+...-+. ++......+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~ 1062 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQ 1062 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhh
Confidence 4444555667777777788888888887643321 11111111 122223334
Q ss_pred CHHHHHHHHHHHHHCC---------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH
Q 003449 609 LLMDTERAFLELKKKG---------------------FSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTY 667 (819)
Q Consensus 609 ~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 667 (819)
-+++|..+|++.-..+ --.....|..++.+-.+.|.+.+|++-|-+ ..|+..|
T Consensus 1063 LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y 1136 (1666)
T KOG0985|consen 1063 LYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNY 1136 (1666)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHH
Confidence 4566666665531100 001233455555555555555555554433 1344556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003449 668 NTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD 747 (819)
Q Consensus 668 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 747 (819)
..+++...+.|.+++-.+++..+.+..-.|.+. ..|+.+|++.++..+-.+++ .-|+.......+.-|+..
T Consensus 1137 ~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~ 1207 (1666)
T KOG0985|consen 1137 LEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEE 1207 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhh
Confidence 666666666666666666666555543333332 35566666666665544443 244555555555556666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 003449 748 SLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNL 795 (819)
Q Consensus 748 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 795 (819)
|.++.|.-+|... ..|..|+..+...|+++.|....+++
T Consensus 1208 ~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1208 KMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 6555554444333 23445555555556666555554444
No 56
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=4.2e-14 Score=141.13 Aligned_cols=262 Identities=15% Similarity=0.176 Sum_probs=101.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 003449 494 TLISAYSRCGSFDQAMSIYKRMLEAG-VTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANG 572 (819)
Q Consensus 494 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 572 (819)
.+...+...|++++|+++++...... ...+...|..+.......++++.|...++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 34555666666666666664433332 122334444444555556666677776666665432 233344444444 566
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003449 573 REIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKG-FSPDIPTLNAMISIYGRRQMVAKTNEI 651 (819)
Q Consensus 573 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 651 (819)
+++++|..++++..+.. ++...+...+..+...++++++..+++.+.... ...+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66677766666655432 344555566666777777777777777765422 234667777888888888888888888
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003449 652 LHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV 731 (819)
Q Consensus 652 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 731 (819)
+++..+.. +.|....+.++..+...|+.+++.++++...+.. ..|...+..++.+|...|+.++|+.++++..+.. .
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 88888763 3356778888888888888888888888777652 3456677888888888889999999988888742 2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 732 PDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 732 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.|+.+...++.++...|+.++|..+.+++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 2677778888888888999998888887754
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=4.5e-11 Score=110.63 Aligned_cols=289 Identities=15% Similarity=0.109 Sum_probs=176.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC--CHHHHHHHHHHHHhcCCHHHH
Q 003449 467 NGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA-GVTP--DLSTYNAVLAALARGGMWEQS 543 (819)
Q Consensus 467 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~A 543 (819)
+.+.++|.++|-+|.+.... +..+-.+|.+.|.+.|..|.|+.+.+.+.++ +.+- .......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 45566777777777664221 3344556777777778888888777777765 1111 123344555667777888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003449 544 EKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPH----AVLLKTLILVYSKSDLLMDTERAFLE 619 (819)
Q Consensus 544 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 619 (819)
+.+|..+.+.+ .--......|+..|-...++++|++..+++.+.+..+. ..+|..+...+....+++.|...+.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 88888777654 23345566677777777777777777777766543333 33455566666666777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003449 620 LKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDI 699 (819)
Q Consensus 620 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 699 (819)
..+.+.. .+.+--.+.+.....|+++.|.+.++.+.+.+..--..+...+..+|...|+.++...++.++.+.. +..
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 7665322 3444445566667777777777777777765433333456667777777777777777777777642 233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHH
Q 003449 700 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA---DSLFVEALDVVRYMIK 762 (819)
Q Consensus 700 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 762 (819)
..-..+...-....-.+.|...+.+-+. -.|+...+..++..... .|...+-+..++.|+.
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3333344333334445555555555444 35677766666665432 2345566666666653
No 58
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=4.3e-12 Score=129.12 Aligned_cols=263 Identities=11% Similarity=0.058 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHH
Q 003449 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAGV--TPDLSTYNAVLAALARGGMWEQSEKIF-AEMKGGRCKPNELTYSSLL 566 (819)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~l~ 566 (819)
.....+..+|...+++++|.++|+.+.+... .-+.++|...+-.+.+. -++..+ +++.+.. +..+.+|-.+.
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~Laq~Li~~~-~~sPesWca~G 428 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLAQDLIDTD-PNSPESWCALG 428 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHHHHHHhhC-CCCcHHHHHhc
Confidence 3444555566666666666666666555421 11445555554333221 111111 2222221 33456666666
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003449 567 HAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVA 646 (819)
Q Consensus 567 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 646 (819)
++|.-+++.+.|++.|+..+..+ +....+|..++.-+.....++.|...|+..+....+ +-.+|..+.-.|.+.++++
T Consensus 429 NcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e 506 (638)
T KOG1126|consen 429 NCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQEKLE 506 (638)
T ss_pred chhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhheeccchhh
Confidence 66666667777777666666543 334566666666666667777777777776643211 2334555667788888899
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003449 647 KTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMR 726 (819)
Q Consensus 647 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 726 (819)
.|.-.|+++.+.+ +-+.+....++..+.+.|+.++|+.+++++...+.+ |+..-...+..+...+++++|+..++++.
T Consensus 507 ~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk 584 (638)
T KOG1126|consen 507 FAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELK 584 (638)
T ss_pred HHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 9988888888764 456677778888888999999999999998876433 55555566677788889999999999998
Q ss_pred HCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003449 727 DSGLVPDVI-TYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 727 ~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
+ +.|+.. ++..++..|-+.|+.+.|+..+--|.+.
T Consensus 585 ~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 585 E--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred H--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 8 677654 6778888888999999999988888874
No 59
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=2.3e-10 Score=107.06 Aligned_cols=452 Identities=15% Similarity=0.107 Sum_probs=260.9
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003449 322 DVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDE 401 (819)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~ 401 (819)
.-+....++..|+.+++--...+-.-...+---+...+...|++++|+..+.-+.+.. .++...+..|.-++.-.|.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 3344566777777777655433222111222223455667788888888888777643 445555555665556677788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003449 402 SAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMK 481 (819)
Q Consensus 402 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 481 (819)
+|..+-....+ +......|....-+.|+-++-..+-+.+... ...--.|.......-.+++|++++++..
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776554322 3334444555555667666655555444321 1122223333333445778888888776
Q ss_pred HCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003449 482 RAGFIPERDTFNT-LISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNEL 560 (819)
Q Consensus 482 ~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 560 (819)
..+ |+....+. +.-+|.+..-++.+.++++-..+. +.-+....|..+....+.=.-..|..-..++.+.+-..
T Consensus 179 ~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--- 252 (557)
T KOG3785|consen 179 QDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--- 252 (557)
T ss_pred hcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc---
Confidence 542 23333333 333556666677777777766654 22233444444333333222222333333333321110
Q ss_pred HHHHHHHHHHc-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003449 561 TYSSLLHAYAN-----GREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAM 635 (819)
Q Consensus 561 ~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 635 (819)
|- .+.-+++ -.+-+.|++++--+.+.. +..-..++-.|.+.+++++|..+.+++... .|-......+
T Consensus 253 -~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~I----PEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgv 324 (557)
T KOG3785|consen 253 -YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKHI----PEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGV 324 (557)
T ss_pred -ch-hHHHHHHcCeEEEeCCccHHHhchHHHhhC----hHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHH
Confidence 11 1111122 233456666655554432 223345666788999999999988776532 2222222222
Q ss_pred HH-----HHHhcCChHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003449 636 IS-----IYGRRQMVAKTNEILHFMNDSGFTPSLT-TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAY 709 (819)
Q Consensus 636 ~~-----~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 709 (819)
+. -........-|.+.|+..-+.+..-|.. --.++..++.-..++++.+-+++.+...-...|...+ .++.++
T Consensus 325 v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk 403 (557)
T KOG3785|consen 325 VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAK 403 (557)
T ss_pred HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHH
Confidence 21 1122334556666666655554333322 2345566666777899999999998876333334444 578899
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCcHHHH
Q 003449 710 CRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEA 788 (819)
Q Consensus 710 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A 788 (819)
+..|++.+|.++|-++....++.+..-...++.+|.+.++.+-|.+++-++-. ..+ ......++..|++.|++.-|
T Consensus 404 ~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyya 480 (557)
T KOG3785|consen 404 LATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYA 480 (557)
T ss_pred HHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876544453333445788899999999999887766532 122 34556778899999999999
Q ss_pred HHHHHHhhhcCCCC
Q 003449 789 ITFVNNLSKLDPHV 802 (819)
Q Consensus 789 ~~~~~~~~~~~p~~ 802 (819)
.+.|+.+..++|.+
T Consensus 481 aKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 481 AKAFDELEILDPTP 494 (557)
T ss_pred HHhhhHHHccCCCc
Confidence 99999999998876
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=8.7e-11 Score=108.77 Aligned_cols=289 Identities=11% Similarity=0.086 Sum_probs=216.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCCHHHH
Q 003449 502 CGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNE---LTYSSLLHAYANGREIDQM 578 (819)
Q Consensus 502 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~~~~~~a 578 (819)
.++.++|.+.|-+|.+.... +..+--+|.+.|.+.|..|.|+++...+.+..--+.. .....|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 57889999999999985332 4566667889999999999999999998875211111 2344566668889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHH
Q 003449 579 LALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDI----PTLNAMISIYGRRQMVAKTNEILHF 654 (819)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~ 654 (819)
..+|..+.+.+ +........++..|-...+|++|++.-.++.+.+..+.. ..|..+...+....+.+.|...+.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999998754 555677888999999999999999999999887654432 3466677777778889999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003449 655 MNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV 734 (819)
Q Consensus 655 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 734 (819)
..+.. +.....-..+.+.+...|+++.|.+.|+.+.+++..--..+...|..+|.+.|+.++...++.++.+... ..
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--Cc
Confidence 98864 3344444567788899999999999999999875443467788889999999999999999999988533 33
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hcCcHHHHHHHHHHhhh
Q 003449 735 ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYC---KLNQRYEAITFVNNLSK 797 (819)
Q Consensus 735 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~ 797 (819)
..-..+........-.+.|..++.+-+. -.|+...+..+++... ..|..++-...++++..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 4445555555555556777777666665 3788888887777654 33556666666666653
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.8e-09 Score=103.48 Aligned_cols=310 Identities=11% Similarity=0.045 Sum_probs=215.7
Q ss_pred CCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-
Q 003449 485 FIPERDTFNTLISAY--SRCGSFDQAMSIYKRMLEA-GVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNEL- 560 (819)
Q Consensus 485 ~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~- 560 (819)
..|...+...-+.++ +..++...|...+--+... .+.-+......+.+.+...|+.++|+..|++.... .|+..
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~ 267 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVE 267 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhh
Confidence 344444443333333 3344444454444433332 34456677778888888888888888888887654 23322
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003449 561 TYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYG 640 (819)
Q Consensus 561 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 640 (819)
......-.+...|+++....+...+.... .....-+..-+.......++..|..+-.+.++... .++..+-.-...+.
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLI 345 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHH
Confidence 22222333456777777777777766543 12222233334445566778888888777776532 25556665666778
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHH
Q 003449 641 RRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVI-FAYC-RNGRMKEA 718 (819)
Q Consensus 641 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A 718 (819)
..+++++|.-.|+..+... +-+..+|..++.+|...|.+.+|.-.-+...+. +.-+..+...+. ..|. ....-++|
T Consensus 346 ~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred hccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHH
Confidence 8899999999999888753 457789999999999999999999888877764 344566666553 3333 22335889
Q ss_pred HHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 003449 719 SRIFSEMRDSGLVPDVI-TYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 719 ~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
.+++++.++ +.|+.. ....++..+...|++++++.++++.+. ..||....+.|++.+...+.+++|...|..++.
T Consensus 424 Kkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 424 KKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999998877 567654 667788888999999999999999988 688999999999999999999999999999999
Q ss_pred cCCCCCH
Q 003449 798 LDPHVTK 804 (819)
Q Consensus 798 ~~p~~~~ 804 (819)
++|++..
T Consensus 500 ~dP~~~~ 506 (564)
T KOG1174|consen 500 QDPKSKR 506 (564)
T ss_pred cCccchH
Confidence 9999843
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.51 E-value=5e-09 Score=106.56 Aligned_cols=473 Identities=15% Similarity=0.170 Sum_probs=258.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 003449 281 TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYA 360 (819)
Q Consensus 281 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 360 (819)
.|..++. |...+++...++..+.+++. ++-...+.....-.++..|+-++|....+.-... ...+.+.|..+.-.+-
T Consensus 10 lF~~~lk-~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~-d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALK-CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN-DLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHH-HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhcc-CcccchhHHHHHHHHh
Confidence 3444454 44567888888888887774 3334444444444566778888888887776664 3346778888877777
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003449 361 RDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMK 440 (819)
Q Consensus 361 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 440 (819)
...++++|++.|......+ +.|...+.-+.-.-.+.|+++........+.+.. +.....|..++.++.-.|+...|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888887754 2245566555555556677777766666666542 2234556666666666777777777
Q ss_pred HHHHHhhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003449 441 VFDEINKCN-CKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAG 519 (819)
Q Consensus 441 ~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 519 (819)
++++..+.. -.|+...+......+- -.....+.|..+.|.+-+..-...
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly-----------------------------~n~i~~E~g~~q~ale~L~~~e~~- 214 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLY-----------------------------QNQILIEAGSLQKALEHLLDNEKQ- 214 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHH-----------------------------HHHHHHHcccHHHHHHHHHhhhhH-
Confidence 777665543 1344444333222111 011222334444444443332221
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHccCCHHHHH-HHHHHHHhCCCCCCHHHH
Q 003449 520 VTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHA-YANGREIDQML-ALSEEIYSGIIEPHAVLL 597 (819)
Q Consensus 520 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~ 597 (819)
+.-....-..-...+.+.+++++|..++..++.. .||...|...+.. +.+-.+.-+++ .+|....+.- +......
T Consensus 215 i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~ 291 (700)
T KOG1156|consen 215 IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY-PRHECPR 291 (700)
T ss_pred HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccccch
Confidence 1101111122233455556666666666666554 3444444443332 22222222333 3333333221 1111100
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH----HHHHhhCC----------CCCC
Q 003449 598 KTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEI----LHFMNDSG----------FTPS 663 (819)
Q Consensus 598 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~----------~~p~ 663 (819)
..-+.......-.+....++....+.|+++ ++..+...|-.....+-..++ ...+...| -+|.
T Consensus 292 Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pt 368 (700)
T KOG1156|consen 292 RLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPT 368 (700)
T ss_pred hccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCch
Confidence 111111111111222334445555555442 222333333221111101111 11111110 1455
Q ss_pred HHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003449 664 LTTY--NTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTF 740 (819)
Q Consensus 664 ~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 740 (819)
...| ..++..|-+.|+++.|..+++.+++. .|+ +..|..-++.+...|++++|..++++..+.. .+|...-..-
T Consensus 369 tllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKc 445 (700)
T KOG1156|consen 369 TLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKC 445 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHH
Confidence 5444 45677889999999999999999985 455 5566677799999999999999999998743 2233322245
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-C-----HHHHHHH--HHHHHhcCcHHHHHHHHHHhhh
Q 003449 741 VASYAADSLFVEALDVVRYMIKQGCKP-N-----QNTYNSI--VDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 741 ~~~~~~~g~~~~A~~~~~~~~~~g~~p-~-----~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
+.-..++++.++|.+++....+.|... + .-.|..+ +.+|.++|++.+|++-+..+.+
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 555678899999999999998776422 1 1234433 5667888999888887766544
No 63
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=1.9e-10 Score=110.14 Aligned_cols=286 Identities=14% Similarity=0.134 Sum_probs=177.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 003449 503 GSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALS 582 (819)
Q Consensus 503 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 582 (819)
|++.+|++...+..+.+-. ....|..-+.+--+.|+.+.+-.++.+..+..-.++..............|+++.|..-.
T Consensus 98 G~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5555555555554444332 223333334444455555555555555554322333333444444455555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHH
Q 003449 583 EEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDI-------PTLNAMISIYGRRQMVAKTNEILHFM 655 (819)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~ 655 (819)
.++.+.+ +.+........++|.+.|++.....++..+.+.|.-.+. .++..++.-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 5555543 444555555556666666666666666666655544333 23455555444444444444555554
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003449 656 NDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI 735 (819)
Q Consensus 656 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 735 (819)
-+. .+-++..-.+++.-+.++|+.++|.++.++..+++..|+ ... ...+.+-++...=++..++..+.. .-++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQH-PEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhC-CCChh
Confidence 443 345566667778888888999999999888888776655 112 223556677777777777766642 22456
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc
Q 003449 736 TYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
.+.+|+..|.+.+.|.+|.+.++.+++ ..|+..+|..+++++-+.|+.++|....++.+-.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 788888888999999999999998887 5788888999999999999999998888887643
No 64
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=3e-10 Score=108.90 Aligned_cols=286 Identities=13% Similarity=0.153 Sum_probs=181.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 003449 362 DGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKV 441 (819)
Q Consensus 362 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 441 (819)
.|++.+|+++..+-.+.+-.| ...|..-.++.-..|+.+.+-..+.++.+..-.++..++-+..+.....|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666655544332 2344444555556666666666666666553344555555666666666666666666
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 003449 442 FDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPER-------DTFNTLISAYSRCGSFDQAMSIYKR 514 (819)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 514 (819)
+.++.+.+ +..........++|.+.|++.+...++..|.+.|.--+. .++..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 66665544 445566666666666666666666666666666654333 2556666666665666665556666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 003449 515 MLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHA 594 (819)
Q Consensus 515 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 594 (819)
.... .+-++..-.+++.-+.++|+.++|.++.++..+++..++. ...-.+.+-++.+.-++..++..+.. +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 5443 2335667777888888999999999999888887655551 11223456677777777776666543 4455
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 003449 595 VLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMND 657 (819)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 657 (819)
..+.+++..|.+.+.+.+|...|+...+. .|+..+|+.+.+.+.+.|+.++|.+..++...
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 67777777777777777777777766655 56677777777777777777777776666553
No 65
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.48 E-value=1.9e-08 Score=102.52 Aligned_cols=422 Identities=13% Similarity=0.097 Sum_probs=206.0
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHH
Q 003449 253 YGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKE 332 (819)
Q Consensus 253 ~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 332 (819)
++..| +-++|........+..+. +.+.|..+.-.+....++++|.+.|......+ +.|...+.-|.-.-...++++.
T Consensus 51 L~~lg-~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 51 LNCLG-KKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhccc-chHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhh
Confidence 34444 445555555444443322 34445555555555555666666666555543 2344455444444445555555
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHH------HHHHhcCCHHHHHH
Q 003449 333 AMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIG-ITPDVFTYTTLL------SGFEKAGKDESAMK 405 (819)
Q Consensus 333 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~~~~~l~------~~~~~~g~~~~A~~ 405 (819)
....-.+..+. .+.....|..++.++.-.|++..|..+.++..+.. ..|+...|.... ....+.|..++|.+
T Consensus 128 ~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 128 YLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 55555444443 22344556666666666666666666666665543 134443333221 12334566666655
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHH-HHHHhcCChHHHH-HHHHHHHHC
Q 003449 406 VFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLL-AVFGQNGMDSEVS-GVFKEMKRA 483 (819)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~-~~~~~m~~~ 483 (819)
.+..-... +......-..-...+.+.+++++|..++..+... .||...|.... .++.+-.+..++. .+|....+.
T Consensus 207 ~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 207 HLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 55443322 1111222233445566677777777777776665 35544444433 3333333333333 444444332
Q ss_pred CCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCC----
Q 003449 484 GFIPERDTF-NTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQ----SEKIFAEMKGGR---- 554 (819)
Q Consensus 484 ~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~m~~~~---- 554 (819)
- |....- ..-+.......-.+..-+++..+.+.|+.+- +..+...|-.-...+- +..+...+...+
T Consensus 284 y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 284 Y--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred C--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCc
Confidence 1 111100 0001111111222334455555555555432 2222222211111110 111111111110
Q ss_pred ------CCCCHHHHH--HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC
Q 003449 555 ------CKPNELTYS--SLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFS 626 (819)
Q Consensus 555 ------~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 626 (819)
-+|....|. .++..|-..|+++.|...++..+..- +.-...|..-+..+...|++++|...+++..+.+ .
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT-PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~ 436 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT-PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-T 436 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-c
Confidence 144444443 35566777888888888888777642 2234555566677788888888888888877654 2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH--------HHH--HHHHHHhcCCHHHHHHHHHHH
Q 003449 627 PDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTT--------YNT--LMYMYSRSENFARAEDVLREI 690 (819)
Q Consensus 627 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~--------~~~--l~~~~~~~g~~~~A~~~~~~~ 690 (819)
+|...-.--+.-..+.++.++|.++.....+.|. +... |-. -+.+|.+.|.+..|++-|..+
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 2433333444555677888888888887777653 2221 111 134566777777666655544
No 66
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.6e-08 Score=105.11 Aligned_cols=559 Identities=14% Similarity=0.201 Sum_probs=283.6
Q ss_pred CCChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--------CCCCHHHHHHHHHH
Q 003449 146 HKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDG--------FDIDVYAYTSLITT 217 (819)
Q Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~ 217 (819)
.|+.+.|.+..+.++. ..+|..+.+.|.+.++++.|.--+-.|.... ...+...=..+...
T Consensus 741 iG~MD~AfksI~~IkS-----------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvL 809 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIKS-----------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVL 809 (1416)
T ss_pred eccHHHHHHHHHHHhh-----------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHH
Confidence 3555555555444432 3466667777777666666654443332110 00010111122222
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 003449 218 YASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEE 297 (819)
Q Consensus 218 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~ 297 (819)
-...|.+++|..+|++-++ |..|=..|...| .|++|.++-+.--+.. -..||.....-+-..++.+.
T Consensus 810 AieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g-~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR---------YDLLNKLYQSQG-MWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcc-cHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHH
Confidence 3356667777777776654 233334455556 6777766655332211 12355555555555666777
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003449 298 AAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVE 377 (819)
Q Consensus 298 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 377 (819)
|++.|++.... --.++..|. .++.......+.+ .|...|.-....+-..|+.+.|+.+|...++
T Consensus 877 AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 877 ALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 76666543211 111111111 1222222222332 2334455555555667888888888887664
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHH
Q 003449 378 IGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTW 457 (819)
Q Consensus 378 ~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 457 (819)
|.++++..|-.|+.++|-++-++- | |......+.+.|-..|++.+|...|.+... +
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------f 996 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQA---------F 996 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------H
Confidence 566778888888888888876653 2 556677788888888888888888877643 3
Q ss_pred HHHHHHHHhcCChHH---------------HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH--------
Q 003449 458 NTLLAVFGQNGMDSE---------------VSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKR-------- 514 (819)
Q Consensus 458 ~~li~~~~~~g~~~~---------------a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------- 514 (819)
...|+.+-.++.-++ |-..|++. |. -+...+..|-+.|.+.+|+++--+
T Consensus 997 snAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~ 1068 (1416)
T KOG3617|consen 997 SNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALD 1068 (1416)
T ss_pred HHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHH
Confidence 334444333332222 22222221 11 112233345566666666554321
Q ss_pred HHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-CCCC
Q 003449 515 MLEA--GVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYS-GIIE 591 (819)
Q Consensus 515 ~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~ 591 (819)
++.. ....|+...+...+.++...++++|..++-..++ |...+.. |+..++.-..++.+.|.- +.-.
T Consensus 1069 lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alql-C~~~nv~vtee~aE~mTp~Kd~~ 1138 (1416)
T KOG3617|consen 1069 LIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQL-CKNRNVRVTEEFAELMTPTKDDM 1138 (1416)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHH-HhcCCCchhHHHHHhcCcCcCCC
Confidence 1111 2334666677777777777777777777665543 2222222 233333333333333321 1112
Q ss_pred CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH----------------HHH
Q 003449 592 PH----AVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKT----------------NEI 651 (819)
Q Consensus 592 ~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A----------------~~~ 651 (819)
++ ..++..++..+.++|.+..|-+-|.+.-+. ..-+.++.+.|+.++- -..
T Consensus 1139 ~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANy 1209 (1416)
T KOG3617|consen 1139 PNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANY 1209 (1416)
T ss_pred ccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhh
Confidence 22 345667778888888888777666554321 1122333444444331 111
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003449 652 LHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV 731 (819)
Q Consensus 652 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 731 (819)
++ ......++.+...++..|.+..-++.--.+|+...+- ...-|..+-. ..|-+++|.+.+.++...+.
T Consensus 1210 LQ---tlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydK---a~gAl~eA~kCl~ka~~k~~- 1278 (1416)
T KOG3617|consen 1210 LQ---TLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI----EIEELQTYDK---AMGALEEAAKCLLKAEQKNM- 1278 (1416)
T ss_pred hh---hcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhH---HhHHHHHHHHHHHHHHhhcc-
Confidence 11 1122344444444444444433333333333322211 1111111111 12334555555555543321
Q ss_pred CCHHHHHH----------HHHHHH-hcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHhh
Q 003449 732 PDVITYNT----------FVASYA-ADSLFVEALDVVRYMIKQGCKPN----QNTYNSIVDGYCKLNQRYEAITFVNNLS 796 (819)
Q Consensus 732 p~~~~~~~----------l~~~~~-~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 796 (819)
....++. .+.... -..+..+.++-.+.|++...-|| ..+|..|+..+....++..|-+.++++.
T Consensus 1279 -~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~ 1357 (1416)
T KOG3617|consen 1279 -STTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQ 1357 (1416)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHh
Confidence 1112222 222211 12245566666777776543333 4678888999999999999999999999
Q ss_pred hcCCCCCHHHH
Q 003449 797 KLDPHVTKELE 807 (819)
Q Consensus 797 ~~~p~~~~~~~ 807 (819)
...|.-+..+|
T Consensus 1358 ~k~p~~~~s~~ 1368 (1416)
T KOG3617|consen 1358 KKVPNVDLSTF 1368 (1416)
T ss_pred hcCCccchhcc
Confidence 99998765543
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.44 E-value=4.2e-08 Score=102.12 Aligned_cols=440 Identities=11% Similarity=0.048 Sum_probs=280.9
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003449 303 EEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITP 382 (819)
Q Consensus 303 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 382 (819)
.++....+..|...|..|.-+...+|+++.+-+.|++.... .......|+.+...|...|.-..|..+.++-......|
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 33334445668888999988999999999999999987654 44567789999999999999999999988876654335
Q ss_pred CHH-HHHHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHH
Q 003449 383 DVF-TYTTLLSGFE-KAGKDESAMKVFEEMRSA--GC--KPNICTFNALIKMHGNR-----------GNFVEMMKVFDEI 445 (819)
Q Consensus 383 d~~-~~~~l~~~~~-~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~ 445 (819)
+.. .+...-..|. +.|..++++..-.++... +. ......|..+.-+|... ....++++.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 433 3433334443 457777777777766652 11 11233444444444321 1245677888888
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCH
Q 003449 446 NKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA-GVTPDL 524 (819)
Q Consensus 446 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~ 524 (819)
.+.+ +.|......+.--|...++.+.|.+..++..+.+-..+...|..|+-.+...+++.+|+.+.+...+. |. |.
T Consensus 471 v~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~ 547 (799)
T KOG4162|consen 471 VQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NH 547 (799)
T ss_pred HhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hh
Confidence 7765 34455555566678888999999999999999877778889999999999999999999999887764 11 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 003449 525 STYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSG--IIEPHAVLLKTLIL 602 (819)
Q Consensus 525 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~ 602 (819)
.....-++.-..-++.+++......+...- -+..... ..++-....++...+.-. .......++..+..
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~w--e~~~~~q-------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHKLALW--EAEYGVQ-------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHHHHHH--HhhhhHh-------hhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 111122223334677777777776665310 0000000 001111111111111000 00011111111111
Q ss_pred HHhcCCCHHHHHHHHHHHHHCCC--CCC------HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003449 603 VYSKSDLLMDTERAFLELKKKGF--SPD------IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMY 674 (819)
Q Consensus 603 ~~~~~~~~~~a~~~~~~~~~~~~--~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 674 (819)
.....+....-... +.+... .|+ ...|......+.+.+..++|..-+.+..... +-....|......+
T Consensus 619 l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~ 694 (799)
T KOG4162|consen 619 LVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLL 694 (799)
T ss_pred HHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHH
Confidence 11100000000000 111111 122 2335566677788888899987777776643 45666777788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003449 675 SRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASR--IFSEMRDSGLVPDVITYNTFVASYAADSLFV 751 (819)
Q Consensus 675 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 751 (819)
...|+.++|.+.|...... .|+ +.+..+++.++.+.|+..-|.+ ++..+.+.+.. ++..|..++..+-+.|+.+
T Consensus 695 ~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchH
Confidence 9999999999999999875 454 7788999999999999777777 99999985433 6779999999999999999
Q ss_pred HHHHHHHHHHH
Q 003449 752 EALDVVRYMIK 762 (819)
Q Consensus 752 ~A~~~~~~~~~ 762 (819)
+|.+.|..+.+
T Consensus 772 ~Aaecf~aa~q 782 (799)
T KOG4162|consen 772 QAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHHh
Confidence 99999999987
No 68
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=2e-07 Score=99.44 Aligned_cols=581 Identities=14% Similarity=0.174 Sum_probs=295.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003449 174 SVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTS-----LITTYASNGRYREAVMVFKKMEEEGCKPTLITYNV 248 (819)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 248 (819)
.....+...|.+.|-...|.+.+.++.+.. ...+-+. -+..|...-.++++.+.+..|...++..+..+.-.
T Consensus 607 yDra~IAqLCEKAGL~qraLehytDl~DIK---R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQ 683 (1666)
T KOG0985|consen 607 YDRAEIAQLCEKAGLLQRALEHYTDLYDIK---RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQ 683 (1666)
T ss_pred ccHHHHHHHHHhcchHHHHHHhcccHHHHH---HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 346778888999999988887777553210 0111111 12334444567888999999988888777777777
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH------------
Q 003449 249 ILNVYGKMGMPWNKIMALVEGMKSA-----------GVKPDSYTFNTLISCCRRGSLHEEAAGVFEEM------------ 305 (819)
Q Consensus 249 ll~~~~~~g~~~~~a~~~~~~~~~~-----------g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~------------ 305 (819)
+..-|+..- ..+...++|+..... ++.-|....-..|.+.|+.|++.+.+++-++-
T Consensus 684 vatky~eql-g~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfL 762 (1666)
T KOG0985|consen 684 VATKYHEQL-GAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFL 762 (1666)
T ss_pred HHHHHHHHh-CHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHH
Confidence 777776654 367777888776543 34556666777888899999999888776541
Q ss_pred HHC---------------CCCCCHHhH------HHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-----------CHhhHH
Q 003449 306 KLA---------------GFSPDKVTY------NALLDVYGKCRRPKEAMQVLREMKINGCLP-----------SIVTYN 353 (819)
Q Consensus 306 ~~~---------------~~~~~~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~-----------~~~~~~ 353 (819)
++. ++.+|.+.| ...|..|...=++...-.+.-.+...++.- ..+.-.
T Consensus 763 keAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~d 842 (1666)
T KOG0985|consen 763 KEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVD 842 (1666)
T ss_pred HhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChH
Confidence 111 222232222 112333333322222222222222211110 011112
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH-HH---HHH-----HH-HH-----------
Q 003449 354 SLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESA-MK---VFE-----EM-RS----------- 412 (819)
Q Consensus 354 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A-~~---~~~-----~~-~~----------- 412 (819)
.|+.-.-+.++..--+..++.....|.. |..++++|.+.|...++-.+- .+ .++ +. .+
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 2333344556666667777777777876 888888888887765433221 10 111 11 01
Q ss_pred CC--------CCCCHHHHHHHHHHHHccCCHHHHHHHH-----------HHHhhCCC--CCCHHHHHHHHHHHHhcCChH
Q 003449 413 AG--------CKPNICTFNALIKMHGNRGNFVEMMKVF-----------DEINKCNC--KPDIVTWNTLLAVFGQNGMDS 471 (819)
Q Consensus 413 ~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~-----------~~~~~~~~--~~~~~~~~~li~~~~~~g~~~ 471 (819)
+| +......|....+.+.+..+.+-=.+++ +...+.++ ..|+.....-+.++...+-..
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 11 0111223444445555555544333333 22222222 235566666778888888888
Q ss_pred HHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003449 472 EVSGVFKEMKRAGF--IPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAE 549 (819)
Q Consensus 472 ~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 549 (819)
+-+++++++.-.+. ..+...-+.|+-...+ -+...++++.+++-..+.. + +.......+-+++|..+|+.
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~-~------ia~iai~~~LyEEAF~ifkk 1073 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAP-D------IAEIAIENQLYEEAFAIFKK 1073 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCch-h------HHHHHhhhhHHHHHHHHHHH
Confidence 88888888764321 2222233444433333 3445666666665543211 1 22233445556666666655
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH
Q 003449 550 MKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDI 629 (819)
Q Consensus 550 m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 629 (819)
.- .+......|+. ..+..+.|.+..+.. ..+..|..++.+-.+.|.+.+|.+-|-+. .|+
T Consensus 1074 f~-----~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika------dDp 1133 (1666)
T KOG0985|consen 1074 FD-----MNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDP 1133 (1666)
T ss_pred hc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCc
Confidence 42 23333333332 223344444443332 12344555555555555555555544332 144
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003449 630 PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAY 709 (819)
Q Consensus 630 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 709 (819)
..|...++...+.|.+++-...+....+....|... ..++.+|++.+++.+-++++ ..||......+.+-|
T Consensus 1134 s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrc 1204 (1666)
T KOG0985|consen 1134 SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRC 1204 (1666)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHH
Confidence 555555555555555555555555554443333322 34555555555554433322 123444444444444
Q ss_pred HhcCCHHHHHHHHHHHHHC--------------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003449 710 CRNGRMKEASRIFSEMRDS--------------------GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQ 769 (819)
Q Consensus 710 ~~~g~~~~A~~~~~~~~~~--------------------g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 769 (819)
...|.++.|.-+|...... .-..+..+|.....+|...+.+.-|. |-..++....
T Consensus 1205 f~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivha 1279 (1666)
T KOG0985|consen 1205 FEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHA 1279 (1666)
T ss_pred hhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHH-----hcCceEEEeh
Confidence 4444444444433321100 00112335555555554444433321 1111122244
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC
Q 003449 770 NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 770 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
.-...++..|...|-++|-+.+++..+.+...
T Consensus 1280 deLeeli~~Yq~rGyFeElIsl~Ea~LGLERA 1311 (1666)
T KOG0985|consen 1280 DELEELIEYYQDRGYFEELISLLEAGLGLERA 1311 (1666)
T ss_pred HhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH
Confidence 55667777788888888888888877665443
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=4.2e-11 Score=110.70 Aligned_cols=240 Identities=12% Similarity=0.059 Sum_probs=138.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcC
Q 003449 528 NAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKS 607 (819)
Q Consensus 528 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 607 (819)
+.+.++|.+.|.+.+|.+-++...+. .|-..||..|-.+|.+..+.+.|+.++.+.++.. +.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~----------- 292 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTY----------- 292 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-Cchhhh-----------
Confidence 45667777777777777777776664 4566677777777777777777777777666542 222323
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003449 608 DLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVL 687 (819)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 687 (819)
...+...+...++.++|.++++...+.. +.+.....++...|.-.++.+-|+.++
T Consensus 293 ------------------------l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 293 ------------------------LLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred ------------------------hhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHH
Confidence 3334444444455555555555555432 334444444455555556666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003449 688 REILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV--ITYNTFVASYAADSLFVEALDVVRYMIKQGC 765 (819)
Q Consensus 688 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 765 (819)
+++++.|.. +...|+.+.-+|.-.+++|-++.-|++....--.|+. .+|.+++......|++.-|.+.++-++..+
T Consensus 348 RRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d- 425 (478)
T KOG1129|consen 348 RRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD- 425 (478)
T ss_pred HHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-
Confidence 666665543 5555555555555556666666666655543222222 355566666666666666666666665431
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHHH
Q 003449 766 KPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELEC 808 (819)
Q Consensus 766 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 808 (819)
.-+...++.|+-.-.+.|+.++|+.+++.+....|+-.+.+++
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~N 468 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTN 468 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccc
Confidence 1144556666666666666666666666666666665554443
No 70
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=4.3e-08 Score=98.87 Aligned_cols=148 Identities=15% Similarity=0.077 Sum_probs=96.0
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003449 644 MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLR--------EILAKGIKPDIISYNTVIFAYCRNGRM 715 (819)
Q Consensus 644 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~ 715 (819)
.+.++.+++....+..-.-...+.-.++......|+++.|++++. .+.+.+..| .+...+...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCC
Confidence 467777777777664311123455666777788899999999888 555544444 3444556667777776
Q ss_pred HHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 003449 716 KEASRIFSEMRDS--GLVPDV----ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAI 789 (819)
Q Consensus 716 ~~A~~~~~~~~~~--g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 789 (819)
+-|..++.+.+.. .-.+.. ..+..++..-.+.|+-++|..+++++.+.. .+|..+...++.+|+.. +.+.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHH
Confidence 6677776666542 011111 244455555567789999999999998842 34778888888888776 667777
Q ss_pred HHHHHh
Q 003449 790 TFVNNL 795 (819)
Q Consensus 790 ~~~~~~ 795 (819)
.+-+++
T Consensus 512 ~l~k~L 517 (652)
T KOG2376|consen 512 SLSKKL 517 (652)
T ss_pred HHhhcC
Confidence 765554
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=4.1e-08 Score=99.01 Aligned_cols=182 Identities=14% Similarity=0.084 Sum_probs=105.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHH
Q 003449 538 GMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYAN-GREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERA 616 (819)
Q Consensus 538 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 616 (819)
+..+.+.++....... .|....-..+..++.. ......+.+++....+........+....++.....|+++.|.++
T Consensus 321 nk~~q~r~~~a~lp~~--~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGM--SPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hhHHHHHHHHHhCCcc--CchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3345555554444322 3333333333333322 224667777777776665444466666777778888888888888
Q ss_pred HH--------HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCCHHH----HHHHHHHHHhcCCHHH
Q 003449 617 FL--------ELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS--GFTPSLTT----YNTLMYMYSRSENFAR 682 (819)
Q Consensus 617 ~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~----~~~l~~~~~~~g~~~~ 682 (819)
+. .+.+.+.. +.+...+...+.+.++.+.|..++...... .-.+.... +..++..-.+.|+.++
T Consensus 399 l~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 87 44444333 344455666666766666666666665532 00111122 2233333456688888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003449 683 AEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEM 725 (819)
Q Consensus 683 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 725 (819)
|...++++.+.. ++|..+...++.+|++. +.+.|..+-..+
T Consensus 477 a~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 477 ASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 888888888753 45777777888887775 567776665543
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=5.5e-10 Score=109.03 Aligned_cols=203 Identities=11% Similarity=0.059 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 003449 594 AVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYM 673 (819)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 673 (819)
...+..++..+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4556667777777888888888888777653 2346677778888888899999999998888764 4456677788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 003449 674 YSRSENFARAEDVLREILAKGIK-PDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVE 752 (819)
Q Consensus 674 ~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 752 (819)
+...|++++|.+.++++.+.... .....+..+..++...|++++|...+++..+... .+...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHH
Confidence 89999999999999998864222 2355677788889999999999999999887432 245678888899999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCC
Q 003449 753 ALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 753 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 800 (819)
|..+++++.+. ...+...+..++..+...|+.++|..+.+.+.+..|
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999999875 233667777888888899999999999888776543
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=6.8e-08 Score=92.89 Aligned_cols=293 Identities=13% Similarity=0.083 Sum_probs=214.5
Q ss_pred HhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003449 465 GQNGMDSEVSGVFKEMKRA-GFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQS 543 (819)
Q Consensus 465 ~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 543 (819)
+-.++...+...+-.+... -++-|.+....+...+...|+.++|...|+.....+.. +........-.+.+.|++++.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhH
Confidence 3455555555554444333 34556777888999999999999999999888765322 222233333445678888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 003449 544 EKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKK 623 (819)
Q Consensus 544 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 623 (819)
..+...+.... +-....|..-.......++++.|+.+.++.+... +.+...+..-+..+...++.++|.-.|+.....
T Consensus 286 ~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 286 SALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 88877776532 1233334444444556788999999999988765 445566666677888899999999999988765
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCC-HH
Q 003449 624 GFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLM-YMYS-RSENFARAEDVLREILAKGIKPD-II 700 (819)
Q Consensus 624 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~p~-~~ 700 (819)
. +-+...|..|+..|...|.+.+|..+-....+. ++.+..++..+. ..+. ....-++|.+++++.+.. .|+ ..
T Consensus 364 a-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~ 439 (564)
T KOG1174|consen 364 A-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTP 439 (564)
T ss_pred c-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHH
Confidence 3 237889999999999999999998887776654 345666665553 3332 334567899999988874 566 56
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003449 701 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 768 (819)
Q Consensus 701 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 768 (819)
..+.+...|...|..++++.++++.+. ..||....+.|+..+...+.+.+|++.|..++. +.|+
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~ 503 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPK 503 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCcc
Confidence 667788889999999999999999887 578999999999999999999999999999988 5674
No 74
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.35 E-value=3.2e-07 Score=94.49 Aligned_cols=384 Identities=16% Similarity=0.196 Sum_probs=200.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003449 223 RYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVF 302 (819)
Q Consensus 223 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 302 (819)
++.+|..+|-+-- ++ ...|..|.... .|++++.+-+. .|.+.-...-.+.+.++...|+-+.|-++-
T Consensus 546 kfk~ae~ifleqn------~t---e~aigmy~~lh-kwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk 612 (1636)
T KOG3616|consen 546 KFKEAEMIFLEQN------AT---EEAIGMYQELH-KWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELK 612 (1636)
T ss_pred hhhHHHHHHHhcc------cH---HHHHHHHHHHH-hHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhc
Confidence 4666666664321 11 12334444444 57776655432 232222223344555566666666555432
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003449 303 EEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITP 382 (819)
Q Consensus 303 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 382 (819)
.. +..+ -+.|+.|.|.|.+.+|.+....=.. ...|......+..++.+...+++|-++|+++..-
T Consensus 613 ----~s----dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~---- 677 (1636)
T KOG3616|consen 613 ----ES----DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---- 677 (1636)
T ss_pred ----cc----cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH----
Confidence 11 1111 2446778888888877665422111 2335556666666777777777777777776531
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003449 383 DVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTF-NALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLL 461 (819)
Q Consensus 383 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 461 (819)
.-.+.+|-+-..+.+|+++-+-. ++..+.+. ..-...+...|+++.|...|-+... ....+
T Consensus 678 -----dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kai 739 (1636)
T KOG3616|consen 678 -----DKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAI 739 (1636)
T ss_pred -----HHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHH
Confidence 12233333333344444443321 11111111 1122333455666666665544321 12234
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003449 462 AVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWE 541 (819)
Q Consensus 462 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 541 (819)
.+......+.+|+.+++.+++... ...-|..+.+.|...|+++.|.++|.+. ..++-.|.+|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 455566777777777777766532 2334666777777788888887777543 22344566777888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003449 542 QSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELK 621 (819)
Q Consensus 542 ~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 621 (819)
+|.++-++... .......|..-..-+-+.|++.+|.++|-.+- .|+ ..+.+|.+.|..++.+++..+..
T Consensus 809 da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhC
Confidence 88777666542 23334444444445666777777766654331 222 23455666666666666555433
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003449 622 KKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDV 686 (819)
Q Consensus 622 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 686 (819)
.. .-..+...+..-|...|++..|.+-|-+.. -|.+.+++|-..+-+++|.++
T Consensus 878 ~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 878 GD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred hh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHH
Confidence 21 112334445555666677777766554332 233445555555555555444
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.35 E-value=4.9e-08 Score=102.76 Aligned_cols=291 Identities=15% Similarity=0.103 Sum_probs=163.6
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc-----
Q 003449 288 CCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARD----- 362 (819)
Q Consensus 288 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~----- 362 (819)
.+...|++++|++.++.-... +......+......+.+.|+.++|..+++.+.+.+ +.|..-|..+..+....
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccc
Confidence 345667777777777664443 22223344455666777777777777777777653 22344444444444222
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 003449 363 GLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKD-ESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKV 441 (819)
Q Consensus 363 g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 441 (819)
...+...++++++.+.- |.......+.-.+..-..+ ..+...+..+..+|++ .+++.+-..|....+.+-..++
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 24566666777666542 2222222221112111112 2344455555666644 3455555555555444445555
Q ss_pred HHHHhhC--------------CCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003449 442 FDEINKC--------------NCKPDIV--TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSF 505 (819)
Q Consensus 442 ~~~~~~~--------------~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 505 (819)
+...... .-+|... ++..+...|...|++++|++..++.++.... ....|..-.+.+-+.|++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCH
Confidence 5544321 0123332 3455566677778888888888877776322 356677777777788888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHccCCHHH
Q 003449 506 DQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNEL------TY--SSLLHAYANGREIDQ 577 (819)
Q Consensus 506 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~--~~l~~~~~~~~~~~~ 577 (819)
++|.+.++.....+.. |...-+..+..+.++|++++|.+++....+.+..|-.. .| .....+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 8888888877776544 55666666777778888888888777776554322111 11 223445666677766
Q ss_pred HHHHHHHHHh
Q 003449 578 MLALSEEIYS 587 (819)
Q Consensus 578 a~~~~~~~~~ 587 (819)
|++.|..+.+
T Consensus 324 ALk~~~~v~k 333 (517)
T PF12569_consen 324 ALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=1.1e-09 Score=101.41 Aligned_cols=234 Identities=12% Similarity=0.080 Sum_probs=153.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHH-HH
Q 003449 206 IDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTF-NT 284 (819)
Q Consensus 206 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~-~~ 284 (819)
.|-+--+.+.+||.+.|.+.+|...|+.-++. .|-+.||..|-.+|.+.. +.+.|+.++.+-... .|-.+|| .-
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~rid-QP~~AL~~~~~gld~--fP~~VT~l~g 295 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRID-QPERALLVIGEGLDS--FPFDVTYLLG 295 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhc-cHHHHHHHHhhhhhc--CCchhhhhhh
Confidence 34455577889999999999999999888876 567777888888888887 778888777766643 3444443 33
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 003449 285 LISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGL 364 (819)
Q Consensus 285 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 364 (819)
+.+.+-..++.++|.++++...+.. +.++....++...|.-.++++-|++.++++.+.|+. +...|+.+.-.|.-.++
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQ 373 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcc
Confidence 4455666677777777777776653 345566666666677777777777777777776654 55566666666666677
Q ss_pred HHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 003449 365 LEEAMELKTQMVEIGITPDVF--TYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVF 442 (819)
Q Consensus 365 ~~~A~~~~~~m~~~g~~pd~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 442 (819)
++-++..|.+....--.|+.. .|-.+.......||+..|.+.|+-.+..+ ..+...+|.|.-.-.+.|++++|..++
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHH
Confidence 777777776666554334332 44455555556666666666666666543 224455666666666666666666666
Q ss_pred HHHhh
Q 003449 443 DEINK 447 (819)
Q Consensus 443 ~~~~~ 447 (819)
.....
T Consensus 453 ~~A~s 457 (478)
T KOG1129|consen 453 NAAKS 457 (478)
T ss_pred HHhhh
Confidence 65544
No 77
>PRK12370 invasion protein regulator; Provisional
Probab=99.33 E-value=1.1e-09 Score=119.86 Aligned_cols=216 Identities=11% Similarity=0.020 Sum_probs=135.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003449 573 REIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEIL 652 (819)
Q Consensus 573 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 652 (819)
+++++|...++++++.. +.+...+..++.++...|++++|...|++..+.. +.+...+..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34566666666666654 4455566666667777777777777777777664 224566777777778888888888888
Q ss_pred HHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003449 653 HFMNDSGFTPS-LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV 731 (819)
Q Consensus 653 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 731 (819)
++..+.. |+ ...+..++..+...|++++|+..++++.+...+-+...+..+..++...|++++|...+.++... .
T Consensus 396 ~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~ 471 (553)
T PRK12370 396 NECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--E 471 (553)
T ss_pred HHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--c
Confidence 8877753 33 22333344456667888888888888776432223555667777778888888888888776553 3
Q ss_pred CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcC
Q 003449 732 PDV-ITYNTFVASYAADSLFVEALDVVRYMIKQ-GCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLD 799 (819)
Q Consensus 732 p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 799 (819)
|+. ...+.+...|+..| ++|...++++.+. .-.+....+ +...|.-.|+.+.+..+ +++.+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 333 34445555666666 4777766666542 112222222 44455566776666666 6666553
No 78
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.32 E-value=2.6e-06 Score=91.43 Aligned_cols=127 Identities=9% Similarity=0.013 Sum_probs=73.1
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003449 677 SENFARAEDVLREILAKG-IKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEAL 754 (819)
Q Consensus 677 ~g~~~~A~~~~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 754 (819)
.++++++.+.|+++..-- -..+ +.....++.+....+.-+.|...+-+.... -.++......+...+.-..+-..-.
T Consensus 1051 kndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l-s~~~~~sll~L~A~~ild~da~~ss 1129 (1238)
T KOG1127|consen 1051 KNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL-SKVQASSLLPLPAVYILDADAHGSS 1129 (1238)
T ss_pred HhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh-CccchhhHHHHHHHHHHhhhhhhhH
Confidence 578888888888887421 1112 344555566666777778888877777664 2345555555544444333322222
Q ss_pred HHHHHHHHc----CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHH
Q 003449 755 DVVRYMIKQ----GCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 755 ~~~~~~~~~----g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
.+.+++.+. .+.-++.. ..-..|.++|+-.-..+.++++.-.+|.++..+
T Consensus 1130 aileel~kl~k~e~~~~~~~l--l~e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~W 1183 (1238)
T KOG1127|consen 1130 AILEELEKLLKLEWFCWPPGL--LKELIYALQGRSVAVKKQIQRAVHSNPGDPALW 1183 (1238)
T ss_pred HHHHHHHHhhhhHHhccChhH--HHHHHHHHhhhhHHHHHHHHHHHhcCCCChHHH
Confidence 233333221 01111111 122235688888899999999999999986654
No 79
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.31 E-value=9.8e-07 Score=91.04 Aligned_cols=188 Identities=16% Similarity=0.257 Sum_probs=96.5
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHH
Q 003449 184 GKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKI 263 (819)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a 263 (819)
.+.+.+..|..+++.+..+. ....-|..+.+-|+..|+++.|.++|.+. ..++-.|..|.+.| .|+.|
T Consensus 743 i~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~-kw~da 810 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAG-KWEDA 810 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccc-cHHHH
Confidence 34455555666655554442 12334555566666666666666666532 12344555666666 56666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 003449 264 MALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKIN 343 (819)
Q Consensus 264 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 343 (819)
.++-++.. |.......|.+-..-+-+.|++.+|++++-.+ | .|+ ..|.+|-+.|..++.+++.++-...
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~-----~aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cch-----HHHHHHHhhCcchHHHHHHHHhChh
Confidence 66554443 33333444444444555666666666655222 1 122 2345666666666666665543211
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003449 344 GCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKV 406 (819)
Q Consensus 344 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~ 406 (819)
.-..|...+..-|-..|+++.|..-|-+..+ |..-+++|-..+.|++|.++
T Consensus 880 ---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 880 ---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred ---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence 1223444455556666666666665544332 33344555555555555444
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.30 E-value=1e-07 Score=100.33 Aligned_cols=292 Identities=13% Similarity=0.149 Sum_probs=182.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHh---
Q 003449 321 LDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFT-YTTLLSGFEK--- 396 (819)
Q Consensus 321 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~-~~~l~~~~~~--- 396 (819)
...+...|++++|++.+++-... +.............+.+.|+.++|..++..+++.+ ||... |..+..+...
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34567889999999999886554 44445556667788999999999999999999974 45554 4444444422
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003449 397 --AGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFV-EMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEV 473 (819)
Q Consensus 397 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 473 (819)
..+.+....+++++...- |.......+.-.+..-..+. .+...+..+...|+++ +++.+-..|.......-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 235677788888887653 32222222221222212232 3445555666666432 344444455544444444
Q ss_pred HHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003449 474 SGVFKEMKRA----G----------FIPER--DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARG 537 (819)
Q Consensus 474 ~~~~~~m~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 537 (819)
..++...... + -.|.. .++..+...|...|++++|+++.+..+++... .+..|..-...+...
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHC
Confidence 5555554332 1 12222 24466677788888888888888888876433 467777777888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--------HHHHHHHHHHHhcCCC
Q 003449 538 GMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPH--------AVLLKTLILVYSKSDL 609 (819)
Q Consensus 538 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~ 609 (819)
|++++|.+.++..+..+ .-|-..=+..+..+.+.|++++|.+++......+..+. .......+.+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888888887654 23444445556667778888888888887776553222 1223445666777777
Q ss_pred HHHHHHHHHHHHH
Q 003449 610 LMDTERAFLELKK 622 (819)
Q Consensus 610 ~~~a~~~~~~~~~ 622 (819)
+..|.+.|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776666553
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=3e-09 Score=110.12 Aligned_cols=197 Identities=20% Similarity=0.250 Sum_probs=97.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-----CCC-CCCHH-
Q 003449 565 LLHAYANGREIDQMLALSEEIYSG-------IIEPHAVLLKTLILVYSKSDLLMDTERAFLELKK-----KGF-SPDIP- 630 (819)
Q Consensus 565 l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~~~~~- 630 (819)
+...|...+++++|..+|++++.. ..+.-..++..|..+|.+.|++++|...++...+ .|. .+.+.
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 334455555555555555544321 1122234455555666666666666655555432 111 11221
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CC
Q 003449 631 TLNAMISIYGRRQMVAKTNEILHFMNDS---GFTPS----LTTYNTLMYMYSRSENFARAEDVLREILAK----GI--KP 697 (819)
Q Consensus 631 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~p 697 (819)
.++.++..+...+++++|..+++...+. -+.++ ..+++.+...|...|++++|.+++++++.. +. .+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 2445555666666666666666544432 01111 134556666666666666666666665522 11 11
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003449 698 -DIISYNTVIFAYCRNGRMKEASRIFSEMRD----SGL-VPDV-ITYNTFVASYAADSLFVEALDVVRYMI 761 (819)
Q Consensus 698 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 761 (819)
....++.|...|.+.+++.+|.++|.+... .|. .|+. .+|..|+..|...|++++|+++.+.+.
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 133455555556666666666665555443 121 1222 255566666666666666666555544
No 82
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.30 E-value=1.3e-06 Score=93.72 Aligned_cols=568 Identities=11% Similarity=0.037 Sum_probs=283.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 003449 209 YAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVK-PDSYTFNTLIS 287 (819)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~-p~~~~~~~ll~ 287 (819)
..|..|...|+...+...|...|++..+.. ..+...+......|++.. .|+.|..+.-...+.... .-..-|....-
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~-~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEES-TWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccc-cHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 456667777776666777777777776653 225566666777777776 677776663322221100 00111222223
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHHcCCHH
Q 003449 288 CCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPS-IVTYNSLISAYARDGLLE 366 (819)
Q Consensus 288 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~ 366 (819)
.+.+.++...|..-|+...+.. +.|...|..+..+|..+|++..|.++|.+.... .|+ ...---.....+..|.++
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHH
Confidence 3555667777777777766654 236667777777777777777777777666543 222 222222233445567777
Q ss_pred HHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccC
Q 003449 367 EAMELKTQMVEI------GITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSA-------GCKPNICTFNALIKMHGNRG 433 (819)
Q Consensus 367 ~A~~~~~~m~~~------g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g 433 (819)
+|+..+...... +..--..++..+...+...|-...|..+++.-++. ....+...|..+-
T Consensus 648 eald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as------- 720 (1238)
T KOG1127|consen 648 EALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS------- 720 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh-------
Confidence 777766665432 00111123333333333444444444444443321 1011112221111
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh---H---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 003449 434 NFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMD---S---EVSGVFKEMKRAGFIPERDTFNTLISAYSR----CG 503 (819)
Q Consensus 434 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~---~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g 503 (819)
+|..+|-... .+ .|+......+..-....+.. + -+.+.+-.-. ....+..+|..++..|.+ .|
T Consensus 721 ---dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGinylr~f~~l~ 793 (1238)
T KOG1127|consen 721 ---DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINYLRYFLLLG 793 (1238)
T ss_pred ---HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHHHHHHHHcC
Confidence 1222222221 00 12222222222211112211 1 0000000000 011122333333333322 22
Q ss_pred ----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003449 504 ----SFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQML 579 (819)
Q Consensus 504 ----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 579 (819)
+...|...+...++..-. +..+|+.|.-. ...|.+.-|.-.|-+-... .+....+|..+...+.+..+++.|.
T Consensus 794 et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~ 870 (1238)
T KOG1127|consen 794 ETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAE 870 (1238)
T ss_pred CcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhh
Confidence 223566666665553222 55566655544 4456666666666555443 2445567777777777888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003449 580 ALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELK----KKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFM 655 (819)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 655 (819)
..+....... +.+...+..........|+.-++..+|..-. ..|--++..-+..-......+|+.++-+...+.+
T Consensus 871 ~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 871 PAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 8888776643 3444445444445556677777777766522 1222233333333333334555555544433333
Q ss_pred hhC---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHhcCCHHHHHHH
Q 003449 656 NDS---------GFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK-GIKPDIISYN----TVIFAYCRNGRMKEASRI 721 (819)
Q Consensus 656 ~~~---------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~g~~~~A~~~ 721 (819)
... +.+.+.+.|...+......+.++.|.+...+.+.. ..+-+...|+ .+.+.++..|.++.|..-
T Consensus 950 ~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 950 SSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 211 34555667777777777777777777777665411 0122444444 334556667777766554
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcC
Q 003449 722 FSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQG-CKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLD 799 (819)
Q Consensus 722 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 799 (819)
+...-. ..|......- -+.+-.|+++++.+.|+++...- -.-+ ......++.+....|..+.|...+-++..+.
T Consensus 1030 ~~~~~~---evdEdi~gt~-l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls 1105 (1238)
T KOG1127|consen 1030 SWKEWM---EVDEDIRGTD-LTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLS 1105 (1238)
T ss_pred hcccch---hHHHHHhhhh-HHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhC
Confidence 433211 1122111111 12355778888888888887521 0112 2445567777778888888888888877775
Q ss_pred CCCC
Q 003449 800 PHVT 803 (819)
Q Consensus 800 p~~~ 803 (819)
+...
T Consensus 1106 ~~~~ 1109 (1238)
T KOG1127|consen 1106 KVQA 1109 (1238)
T ss_pred ccch
Confidence 5543
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.29 E-value=2.1e-09 Score=111.29 Aligned_cols=28 Identities=36% Similarity=0.513 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 490 DTFNTLISAYSRCGSFDQAMSIYKRMLE 517 (819)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 517 (819)
.+++.|...|.+.|++++|...+++..+
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~ 311 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALE 311 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence 4677777888888888888888777654
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.28 E-value=3e-09 Score=106.17 Aligned_cols=231 Identities=12% Similarity=-0.003 Sum_probs=149.6
Q ss_pred CCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003449 573 REIDQMLALSEEIYSGII---EPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTN 649 (819)
Q Consensus 573 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 649 (819)
+..+.++..+.+++.... +.....+..++..+...|+.++|...|++..+... .+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 344555556666654221 12234566677777888888888888888877642 35778888888888888888888
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003449 650 EILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG 729 (819)
Q Consensus 650 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 729 (819)
+.|+...+.. +-+..++..++.++...|++++|.+.+++..+. .|+..........+...++.++|...+++....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 8888888753 335567777888888888888898888888875 343221222222344567788888888765542
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---C--CCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCC
Q 003449 730 LVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ---G--CKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 730 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 803 (819)
..++. |. ........|++.++ ..++.+.+. . +.| ....|..++..+.+.|++++|+..|+++++.+|.+.
T Consensus 195 ~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 LDKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred CCccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 22222 22 22334445665444 344444421 0 112 346788889999999999999999999999888765
Q ss_pred HHHHHHHHH
Q 003449 804 KELECKLSD 812 (819)
Q Consensus 804 ~~~~~~l~~ 812 (819)
..+.-.+++
T Consensus 271 ~e~~~~~~e 279 (296)
T PRK11189 271 VEHRYALLE 279 (296)
T ss_pred HHHHHHHHH
Confidence 555444444
No 85
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=3.1e-09 Score=116.31 Aligned_cols=217 Identities=10% Similarity=-0.041 Sum_probs=125.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 003449 538 GMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAF 617 (819)
Q Consensus 538 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 617 (819)
+++++|...+++..+.+ +.+...+..+...+...|++++|...++++++.. +.+...+..++.++...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33566666666666543 3344555555555666666666666666666654 344555566666666777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003449 618 LELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKP 697 (819)
Q Consensus 618 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 697 (819)
++..+..+. +...+..++..+...|++++|...++++.+...+-+...+..+..++...|++++|...++++.... ..
T Consensus 396 ~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~ 473 (553)
T PRK12370 396 NECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-IT 473 (553)
T ss_pred HHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-ch
Confidence 776665322 2222233333455567778888877777654312234456667777777888888888887766531 12
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003449 698 DIISYNTVIFAYCRNGRMKEASRIFSEMRDS-GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 698 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
+....+.+...|+..| ++|...++.+.+. ...+....+ +...+.-.|+-+.+..+ +++.+.
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 3444555555666666 4677766666553 111211122 44445566666666655 666653
No 86
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.26 E-value=5.6e-09 Score=101.84 Aligned_cols=199 Identities=12% Similarity=0.023 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003449 208 VYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLIS 287 (819)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~ 287 (819)
...+..+...|...|++++|...|++..+.. +.+...+..+...+...| ++++|.+.+++..+.... +...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLG-ELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 4556666666677777777777777666543 224455555666666666 666666666666554322 3445555555
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHH
Q 003449 288 CCRRGSLHEEAAGVFEEMKLAGF-SPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLE 366 (819)
Q Consensus 288 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 366 (819)
.+...|++++|.+.+++...... ......+..+...+...|++++|...+++..... +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 56666666666666666654321 1223345555556666666666666666665542 223445556666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003449 367 EAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMR 411 (819)
Q Consensus 367 ~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 411 (819)
+|.+.+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666666554 23334444455555556666666666555544
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=4e-08 Score=98.21 Aligned_cols=93 Identities=19% Similarity=0.201 Sum_probs=48.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcH
Q 003449 707 FAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQR 785 (819)
Q Consensus 707 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~ 785 (819)
..+.+.|++.+|++.|.++++.. .-|...|.+.+.+|.+.|.+..|+.=.+..++. .| ....|..-+.++....++
T Consensus 366 ne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 366 NEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555543 113445555555555555555555555555552 33 334444445555555555
Q ss_pred HHHHHHHHHhhhcCCCC
Q 003449 786 YEAITFVNNLSKLDPHV 802 (819)
Q Consensus 786 ~~A~~~~~~~~~~~p~~ 802 (819)
++|.+.|+++++.+|++
T Consensus 443 dkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 443 DKALEAYQEALELDPSN 459 (539)
T ss_pred HHHHHHHHHHHhcCchh
Confidence 55555555555555554
No 88
>PF13041 PPR_2: PPR repeat family
Probab=99.20 E-value=4.6e-11 Score=82.29 Aligned_cols=49 Identities=47% Similarity=0.858 Sum_probs=28.1
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003449 347 PSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFE 395 (819)
Q Consensus 347 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~ 395 (819)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.9e-07 Score=93.49 Aligned_cols=234 Identities=13% Similarity=0.083 Sum_probs=131.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHH
Q 003449 529 AVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPH------AVLLKTLIL 602 (819)
Q Consensus 529 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~ 602 (819)
.+.++..+..+++.|++-+....... -+..-++....+|...|.+.+.+..-...++.|-+.. ...+..++.
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34444444445555555555444432 2222333334444455544444444444333331110 111122344
Q ss_pred HHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHH
Q 003449 603 VYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLT-TYNTLMYMYSRSENFA 681 (819)
Q Consensus 603 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~ 681 (819)
+|.+.++++.++..|.+.+...-.|+. ..+....+++....+...-.+ |... -...-...+.+.|++.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHH
Confidence 566667777777777776543222222 122233455555444443322 3221 1223366678888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHH
Q 003449 682 RAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYM 760 (819)
Q Consensus 682 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 760 (819)
.|+..|.++++.. +-|...|..-.-+|.+.|.+..|++-.+..++. .|+. ..|..-+.++....+|++|.+.|++.
T Consensus 376 ~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 376 EAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888875 336888888888888888888888888887773 4443 35666677777778888888888888
Q ss_pred HHcCCCCC-HHHHHHHHHHHH
Q 003449 761 IKQGCKPN-QNTYNSIVDGYC 780 (819)
Q Consensus 761 ~~~g~~p~-~~~~~~l~~~~~ 780 (819)
++. .|+ ......+.+++.
T Consensus 453 le~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 453 LEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred Hhc--CchhHHHHHHHHHHHH
Confidence 883 463 344334444433
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.18 E-value=2.2e-07 Score=87.14 Aligned_cols=292 Identities=13% Similarity=0.108 Sum_probs=136.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcC
Q 003449 460 LLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTY-NAVLAALARGG 538 (819)
Q Consensus 460 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g 538 (819)
+...+...|++.+|+.-|...++.+.. +-.++..-...|...|+..-|+.-+.++++. +||-..- ..-...+.+.|
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 344445555555555555555443111 2222223334555556555555555555553 3332211 11223455666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHH----------------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003449 539 MWEQSEKIFAEMKGGRCKPNEL----------------TYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLIL 602 (819)
Q Consensus 539 ~~~~A~~~~~~m~~~~~~~~~~----------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 602 (819)
.+++|..-|+.++++. |+.. .....+..+...|+...++.....+++.. +-+..++..-..
T Consensus 121 ele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rak 197 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAK 197 (504)
T ss_pred cHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHH
Confidence 6666666666666542 2111 11122233445566666666666666542 444555555566
Q ss_pred HHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH----HHH--------
Q 003449 603 VYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTY----NTL-------- 670 (819)
Q Consensus 603 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~----~~l-------- 670 (819)
+|...|+...|+.-++...+.. ..+...+..+...+...|+.+.++...++-.+. .||.... ..+
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHH
Confidence 6666666666666665555432 224444445555556666666666666655543 3444321 100
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 003449 671 -MYMYSRSENFARAEDVLREILAKGIKPDI---ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VITYNTFVASYA 745 (819)
Q Consensus 671 -~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~ 745 (819)
+....+.+++.++++..+..++....... ..+..+-.++...|++.+|+....++++ +.|| ..++..-+.+|.
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYL 352 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHh
Confidence 11122334444444444444443211111 1122222333444445555555555444 3333 334444444455
Q ss_pred hcCChHHHHHHHHHHHH
Q 003449 746 ADSLFVEALDVVRYMIK 762 (819)
Q Consensus 746 ~~g~~~~A~~~~~~~~~ 762 (819)
...+|++|+.-|+++.+
T Consensus 353 ~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 353 GDEMYDDAIHDYEKALE 369 (504)
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 55555555555555544
No 91
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=2.6e-06 Score=89.27 Aligned_cols=237 Identities=13% Similarity=0.124 Sum_probs=122.1
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHH
Q 003449 182 MLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWN 261 (819)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 261 (819)
.|..-|+.+.|.+-...+.. ..+|..|.+.+.+..+++-|.-.+..|.... .-
T Consensus 737 fyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aR------ga--------------- 789 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNAR------GA--------------- 789 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhh------hH---------------
Confidence 45567899988887776653 4789999999999999999988888776431 00
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 003449 262 KIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMK 341 (819)
Q Consensus 262 ~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 341 (819)
+.+.+..+.|- .+=..+.......|.+++|+.++.+-++. ..|=..|-..|.+++|.++-+.-.
T Consensus 790 ---RAlR~a~q~~~----e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~D 853 (1416)
T KOG3617|consen 790 ---RALRRAQQNGE----EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKD 853 (1416)
T ss_pred ---HHHHHHHhCCc----chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcc
Confidence 11111222111 11111111223456667777777665543 233345556677777766654321
Q ss_pred HCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------CCCCHHHHHHHHHHHHhcCCHHH
Q 003449 342 INGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIG-------------------ITPDVFTYTTLLSGFEKAGKDES 402 (819)
Q Consensus 342 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------------~~pd~~~~~~l~~~~~~~g~~~~ 402 (819)
. +. -..||......+-..++++.|++.|++.-... -.-|...|.-....+...|+.+.
T Consensus 854 R--iH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 854 R--IH-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred c--ee-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHH
Confidence 1 11 22345555555555666777766666531100 01122233333333334444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003449 403 AMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKE 479 (819)
Q Consensus 403 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 479 (819)
|+.+|...+. |-++++..|-+|+.++|-++-++ .-|......|.+.|-..|++.+|...|-+
T Consensus 931 Al~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 931 ALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4444444332 23344444555555555554444 22444444455555555555555555443
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.18 E-value=2.8e-08 Score=88.32 Aligned_cols=206 Identities=9% Similarity=-0.028 Sum_probs=162.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 003449 596 LLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYS 675 (819)
Q Consensus 596 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 675 (819)
+...++..|...|+...|..-+++.++... .+..++..+...|.+.|+.+.|.+.|++..... +-+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 344566778888888888888888887742 256778888888999999999999999888764 456678888888899
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003449 676 RSENFARAEDVLREILAKGIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEAL 754 (819)
Q Consensus 676 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 754 (819)
..|.+++|...|++.+..-.-+ -..+|..+..+-.+.|+.+.|.+.|++.++.... ...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 9999999999999888642111 2568888888888899999999999998884222 3346778888889999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 755 DVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 755 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
-++++....+. +....+...+..-...|+.+.|-++=.++...-|...+.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 99998887653 777777777777788899988888888888888876443
No 93
>PF13041 PPR_2: PPR repeat family
Probab=99.17 E-value=9.3e-11 Score=80.76 Aligned_cols=49 Identities=39% Similarity=0.732 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003449 206 IDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYG 254 (819)
Q Consensus 206 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 254 (819)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3445555555555555555555555555555555555555555555554
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.16 E-value=1.2e-08 Score=90.57 Aligned_cols=168 Identities=12% Similarity=0.024 Sum_probs=145.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003449 631 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC 710 (819)
Q Consensus 631 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 710 (819)
+...|.-.|.+.|+...|..-+++.++.. +.+..++..+...|.+.|+.+.|.+.|++.++... -+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 45667788999999999999999999974 45567889999999999999999999999998642 26788999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHH
Q 003449 711 RNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEA 788 (819)
Q Consensus 711 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A 788 (819)
..|++++|...|++....-..+ -..+|.+++.+..+.|+++.|..++++.++ ..| .+.....++...++.|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999999752222 235899999999999999999999999999 456 567788999999999999999
Q ss_pred HHHHHHhhhcCCCC
Q 003449 789 ITFVNNLSKLDPHV 802 (819)
Q Consensus 789 ~~~~~~~~~~~p~~ 802 (819)
.-++++....++-.
T Consensus 193 r~~~~~~~~~~~~~ 206 (250)
T COG3063 193 RLYLERYQQRGGAQ 206 (250)
T ss_pred HHHHHHHHhccccc
Confidence 99999999887733
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=5.3e-07 Score=83.00 Aligned_cols=315 Identities=11% Similarity=0.094 Sum_probs=166.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHH
Q 003449 211 YTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTL-ISCC 289 (819)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~l-l~~~ 289 (819)
+++++..+.+..++++|++++..-.++..+ +......+..+|.... ++..|...++++... .|...-|... ...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q-~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQ-EFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHH-HHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 445555666666777777776666655321 5555566666666665 667777777766654 2333333322 3445
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH--HHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHH
Q 003449 290 RRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLD--VYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEE 367 (819)
Q Consensus 290 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 367 (819)
.+.+.+..|+.+...|... ++...-..-+. .....+++..+..++++.... .+..+.+.......+.|++++
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHH
Confidence 6667777777777666543 22221111122 223457777777777776432 244555555566677888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCCHHHHHHHHH
Q 003449 368 AMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNIC----TFNALIKMHGNRGNFVEMMKVFD 443 (819)
Q Consensus 368 A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~ 443 (819)
|.+-|+...+.|---....|+.. -+..+.|+.+.|.+...+++++|++..+. ...-.+++- ..|+ -..+-.
T Consensus 163 AvqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgN---t~~lh~ 237 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGN---TLVLHQ 237 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccc---hHHHHH
Confidence 88888887775333234556543 34556788888888888888777542211 000001100 0000 000000
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 003449 444 EINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA-GFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTP 522 (819)
Q Consensus 444 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 522 (819)
. .-+..+|.-...+.+.|+++.|.+.+-+|--+ ....|+.|...+.-.-. .+++....+-+.-+.+.+. -
T Consensus 238 S-------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-f 308 (459)
T KOG4340|consen 238 S-------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-F 308 (459)
T ss_pred H-------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-C
Confidence 0 01122333344455666666666666555322 12234555444332211 2334444444444444433 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003449 523 DLSTYNAVLAALARGGMWEQSEKIFAE 549 (819)
Q Consensus 523 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 549 (819)
..+|+..++-.||++.-++-|-.++.+
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 456666666677777777766666654
No 96
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=1.3e-07 Score=94.38 Aligned_cols=226 Identities=9% Similarity=-0.046 Sum_probs=143.0
Q ss_pred CCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 003449 538 GMWEQSEKIFAEMKGGR-CKPN--ELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTE 614 (819)
Q Consensus 538 g~~~~A~~~~~~m~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 614 (819)
+..+.++.-+.+++... ..|+ ...|..+...|...|+.++|...|++.++.. +.+...+..++..+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44566666666666432 1122 2345556666777777777777777777754 445677777888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003449 615 RAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKG 694 (819)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 694 (819)
..|+...+.... +..++..+...+...|++++|.+.++...+.. |+..........+...++.++|...|++....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 888888765322 45677778888888888999988888888753 43322222222334567889999998776543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003449 695 IKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS---GL--VP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 768 (819)
Q Consensus 695 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 768 (819)
..++...+ .......|+..++ +.++.+.+. .. .| ....|..++..+.+.|++++|+..|+++++.+ .||
T Consensus 195 ~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~ 269 (296)
T PRK11189 195 LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYN 269 (296)
T ss_pred CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cch
Confidence 23332222 2233345665554 345554432 11 11 23478899999999999999999999999843 235
Q ss_pred HHHHH
Q 003449 769 QNTYN 773 (819)
Q Consensus 769 ~~~~~ 773 (819)
..-+.
T Consensus 270 ~~e~~ 274 (296)
T PRK11189 270 FVEHR 274 (296)
T ss_pred HHHHH
Confidence 44443
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.04 E-value=1.3e-06 Score=91.08 Aligned_cols=205 Identities=8% Similarity=0.003 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCH--HHHHHH
Q 003449 594 AVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGF-TPSL--TTYNTL 670 (819)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~--~~~~~l 670 (819)
......++..+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++.....- .++. ..|..+
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l 192 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL 192 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence 3344455566677777777777777777653 22455666777777777778888777777665421 1222 234466
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHHCCCC--CCHHHHHHHHH
Q 003449 671 MYMYSRSENFARAEDVLREILAKGI-KPDIISY-N--TVIFAYCRNGRMKEASRI--FSEMRDSGLV--PDVITYNTFVA 742 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~~~~~~~g~~--p~~~~~~~l~~ 742 (819)
...+...|++++|..+++++..... .+..... + .++.-+...|..+.+.++ +......... .........+.
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~ 272 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAAL 272 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 7777778888888888887754321 1111111 1 223333444443333332 1111111001 01112225666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC-------C-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcC
Q 003449 743 SYAADSLFVEALDVVRYMIKQGCK-------P-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLD 799 (819)
Q Consensus 743 ~~~~~g~~~~A~~~~~~~~~~g~~-------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 799 (819)
++...|+.++|...++.+...... . ...+....+.++...|++++|.+.+..++.+.
T Consensus 273 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 273 ALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 777888888888888887653211 1 23344455666778899999999888887664
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.02 E-value=1.5e-05 Score=75.23 Aligned_cols=368 Identities=12% Similarity=0.074 Sum_probs=220.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHH-HHHHH
Q 003449 386 TYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNT-LLAVF 464 (819)
Q Consensus 386 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~ 464 (819)
-..-+.+.+...|++..|+..|...++.+ +.+-.++..-...|...|+-.-|+.-+.++++. +||-..-.. -...+
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 34445555555666666666666555431 111122222234455555555555555555543 454332221 12344
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003449 465 GQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSE 544 (819)
Q Consensus 465 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 544 (819)
.++|.+++|..-|+.+++.... ..+ ...++.+.-..++-. .....+..+.-.|+...|+
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s--~~~---~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPS--NGL---VLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCC--cch---hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHH
Confidence 5555555555555555544221 100 011111111111111 1112233455689999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Q 003449 545 KIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKG 624 (819)
Q Consensus 545 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 624 (819)
.....+++.. +-|...+..-..+|...|++..|+.-++...+.. ..+...+..+...+...|+.+.++...++.++.
T Consensus 176 ~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl- 252 (504)
T KOG0624|consen 176 EMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL- 252 (504)
T ss_pred HHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-
Confidence 9999998863 5677777778889999999999998888776654 455666777888899999999999999998886
Q ss_pred CCCCHHH----HHHH---------HHHHHhcCChHHHHHHHHHHhhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHH
Q 003449 625 FSPDIPT----LNAM---------ISIYGRRQMVAKTNEILHFMNDSGFTPSLTT---YNTLMYMYSRSENFARAEDVLR 688 (819)
Q Consensus 625 ~~~~~~~----~~~l---------~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~ 688 (819)
.||... |-.+ +......+++.++++..+...+..-...... +..+-.++...|++.+|+..-.
T Consensus 253 -dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 253 -DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred -CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 455432 2211 1123457788888888888887632212222 3455667788999999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003449 689 EILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP 767 (819)
Q Consensus 689 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 767 (819)
++++. .|+ +.++.--+.+|.-...+++|+.-|+...+. .++.. +..+.++-.+++.+..-+
T Consensus 332 evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~--n~sn~-------------~~reGle~Akrlkkqs~k- 393 (504)
T KOG0624|consen 332 EVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL--NESNT-------------RAREGLERAKRLKKQSGK- 393 (504)
T ss_pred HHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcccH-------------HHHHHHHHHHHHHHHhcc-
Confidence 99984 454 888888889999999999999999999884 33321 112333333444432111
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHhhh-cCCCC
Q 003449 768 NQNTYNSIVDGYCKLNQRYEAITFVNNLSK-LDPHV 802 (819)
Q Consensus 768 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~ 802 (819)
.. |+.++- -.++-...|..+.|+++.. -.|+|
T Consensus 394 -RD-YYKILG-VkRnAsKqEI~KAYRKlAqkWHPDN 426 (504)
T KOG0624|consen 394 -RD-YYKILG-VKRNASKQEITKAYRKLAQKWHPDN 426 (504)
T ss_pred -ch-HHHHhh-hcccccHHHHHHHHHHHHHhcCCcc
Confidence 12 333332 3355566677777777654 47765
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=6.8e-07 Score=82.30 Aligned_cols=349 Identities=12% Similarity=0.072 Sum_probs=204.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhc
Q 003449 178 VLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVI-LNVYGKM 256 (819)
Q Consensus 178 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~ 256 (819)
.++.-+-+..++++|.+++..-.+...+ +....+.|..||.+..++..|...++++-.. .|...-|... ...+.+.
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 3444445677788888887776665433 5566777788888888888888888887665 4454444432 3345566
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHH
Q 003449 257 GMPWNKIMALVEGMKSAGVKPDSYTFNTLI--SCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAM 334 (819)
Q Consensus 257 g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 334 (819)
+ .+..|+.+...|... ++...-..-+ ......+++..+..+.++....| +..+.+.......+.|++++|.
T Consensus 92 ~-i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 92 C-IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred c-ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 6 678888887777542 2221111111 22345677777777777665432 4444555555567899999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHH
Q 003449 335 QVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYT----TLLSGFEKAGKDESAMKVFEEM 410 (819)
Q Consensus 335 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~----~l~~~~~~~g~~~~A~~~~~~~ 410 (819)
+-|+...+.+.-.....||..+.. .+.|+++.|++...+++++|++..+..-. -.+.. -..|+ -..+....
T Consensus 165 qkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgN---t~~lh~Sa 239 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGN---TLVLHQSA 239 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccc---hHHHHHHH
Confidence 999998877555566777765544 46789999999999999988653221100 00000 00011 00011100
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 003449 411 RSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCN-CKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPER 489 (819)
Q Consensus 411 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 489 (819)
-+..+|.-...+.+.|+++.|.+-+.+|.-+. ...|++|...+.-. -..+++.+..+-+.-+.+.+. -..
T Consensus 240 -------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ 310 (459)
T KOG4340|consen 240 -------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPP 310 (459)
T ss_pred -------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CCh
Confidence 12334444555667888898988888875432 23466666554322 223445555555555555543 356
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003449 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVT-PDLSTYNAVLAALARGGMWEQSEKIFAEM 550 (819)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 550 (819)
.||..++-.||+..-++.|.+++.+-...... .+...|+.+=....-.-..++|++-++.+
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 78888888999988888888887653222111 12223332222222344566666655544
No 100
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.00 E-value=9.2e-05 Score=79.35 Aligned_cols=162 Identities=14% Similarity=0.167 Sum_probs=85.0
Q ss_pred HHHHHHHHHhcCChH---HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003449 632 LNAMISIYGRRQMVA---KTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFA 708 (819)
Q Consensus 632 ~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 708 (819)
.+.|++.+-+.++.. +|+-+++...... +-|..+-..++..|+-.|-+..|.+.|+.+--+.+.-|..-|. +..-
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~ 516 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRR 516 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHH
Confidence 456666776666544 4555555555442 3344445567777777788888888887775444544433332 2244
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH---HHHHHcCCCCCHHHHHHHHHHHHhcCcH
Q 003449 709 YCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVV---RYMIKQGCKPNQNTYNSIVDGYCKLNQR 785 (819)
Q Consensus 709 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 785 (819)
+...|++..+...+....+. +.-+..----++...++.|.|.+-.++. +++......--..+-+.+...++..++.
T Consensus 517 ~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~ 595 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRG 595 (932)
T ss_pred HHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 55667788887777776652 1111111112222334555555544432 2222211111123344555556666777
Q ss_pred HHHHHHHHHhh
Q 003449 786 YEAITFVNNLS 796 (819)
Q Consensus 786 ~~A~~~~~~~~ 796 (819)
++-...+..+.
T Consensus 596 ~q~~~~~~~~~ 606 (932)
T KOG2053|consen 596 TQLLKLLESMK 606 (932)
T ss_pred HHHHHHHhccc
Confidence 66666666555
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.96 E-value=4.8e-06 Score=86.92 Aligned_cols=262 Identities=9% Similarity=0.035 Sum_probs=140.6
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccC
Q 003449 498 AYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNA---VLAALARGGMWEQSEKIFAEMKGGRCKPN-ELTYSSLLHAYANGR 573 (819)
Q Consensus 498 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~ 573 (819)
.+...|++++|.+.+++..+.... +...+.. ........+..+.+.+.+.... ...|+ ......+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPR-DLLALKLHLGAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhHHHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcC
Confidence 444556666666666666654322 2333321 1111112334444444443311 11222 233334455666677
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCChHHHHH
Q 003449 574 EIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFS-PDI--PTLNAMISIYGRRQMVAKTNE 650 (819)
Q Consensus 574 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~A~~ 650 (819)
++++|...+++.++.. +.+...+..+..++...|++++|...+++..+.... ++. ..+..+...+...|++++|..
T Consensus 129 ~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 129 QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 7777777777777654 444556666777777777777777777776654221 222 234566777788888888888
Q ss_pred HHHHHhhCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--H-HHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003449 651 ILHFMNDSGF-TPSLTTY-N--TLMYMYSRSENFARAEDV--L-REILAKGI-KPDIISYNTVIFAYCRNGRMKEASRIF 722 (819)
Q Consensus 651 ~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~ 722 (819)
++++...... .+..... + .++.-+...|....+.+. + ........ ..........+.++...|+.++|..++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 8888754321 1111111 1 223333334433222222 1 11111100 111122234567778889999999999
Q ss_pred HHHHHCCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003449 723 SEMRDSGLV--------PDVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 723 ~~~~~~g~~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
+.+...... .........+.++...|++++|.+.+..++..
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888763211 01223345556678999999999999988763
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=4.4e-08 Score=98.82 Aligned_cols=224 Identities=13% Similarity=0.123 Sum_probs=137.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHH
Q 003449 534 LARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDT 613 (819)
Q Consensus 534 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 613 (819)
+.+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+++.++.. +.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~--------------------- 351 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PT--------------------- 351 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-Cc---------------------
Confidence 445666666666666665542 2334455555555555555555555555555433 33
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH---------HHHHhcCCHHHHH
Q 003449 614 ERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLM---------YMYSRSENFARAE 684 (819)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~---------~~~~~~g~~~~A~ 684 (819)
+..+...|...|...|.-.+|.+.++.-+... |.. .|.... ..+.....+.+..
T Consensus 352 --------------NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~--p~y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~ 414 (579)
T KOG1125|consen 352 --------------NLEALMALAVSYTNEGLQNQALKMLDKWIRNK--PKY-VHLVSAGENEDFENTKSFLDSSHLAHIQ 414 (579)
T ss_pred --------------cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--ccc-hhccccCccccccCCcCCCCHHHHHHHH
Confidence 34444444445555554455555544443321 000 000000 0011111233344
Q ss_pred HHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 685 DVLREIL-AKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 685 ~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
++|-++. ..+..+|+.+...|.-.|.-.|++++|++.|+.++. ..| |...|+.|+..++...+.++|+..|+++++
T Consensus 415 ~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 415 ELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred HHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 4444444 444446788888888888888899999999998887 455 455788888888888888999999999988
Q ss_pred cCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC
Q 003449 763 QGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 763 ~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
++|. ..+.+.|+-.|...|.++||.+.|-.++.+.+.
T Consensus 493 --LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 493 --LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred --cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 6785 467778888888999999999988888777655
No 103
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.94 E-value=8.8e-05 Score=74.80 Aligned_cols=154 Identities=10% Similarity=0.082 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003449 645 VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKP-DIISYNTVIFAYCRNGRMKEASRIFS 723 (819)
Q Consensus 645 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 723 (819)
.+...++++++.......-..+|..+++.-.+...++.|..+|.++.+.+..+ ++.++++++..||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 45555566665543222223457777777777788888888888888766555 57777777776654 56778888887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCC
Q 003449 724 EMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN--QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 724 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 800 (819)
--.+. +.-++.-....+.-+...++-..|..+|++.+..++.++ ..+|...+..-..-|+...+.++-++....-|
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 75553 222333444666667777777788888888887755553 47788888877888888888888777766655
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.93 E-value=6.2e-06 Score=97.92 Aligned_cols=204 Identities=9% Similarity=0.009 Sum_probs=87.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCC--CHHHH
Q 003449 599 TLILVYSKSDLLMDTERAFLELKK----KGFS--P-DIPTLNAMISIYGRRQMVAKTNEILHFMNDSG--FTP--SLTTY 667 (819)
Q Consensus 599 ~l~~~~~~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~p--~~~~~ 667 (819)
.+...+...|++++|...+++... .+.. + ....+..+...+...|++++|...+++..... ..+ ....+
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 615 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCL 615 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHH
Confidence 344445555555555555544432 1110 0 11122333344444566666655555543320 011 11223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHH--H--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHH
Q 003449 668 NTLMYMYSRSENFARAEDVLREILAKG--IKPDII--S--YNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV---ITYN 738 (819)
Q Consensus 668 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~--~--~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~ 738 (819)
..+...+...|++++|.+.++++.... ...... . ....+..+...|+.+.|..++............ ..+.
T Consensus 616 ~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 695 (903)
T PRK04841 616 AMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWR 695 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHH
Confidence 334444555666666666555553210 000000 0 000112233455566666655443321110000 1123
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCC
Q 003449 739 TFVASYAADSLFVEALDVVRYMIKQ----GCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
.++.++...|++++|..+++++.+. |... ...++..++.++.+.|+.++|...+.+++++....
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 4455555666666666666655432 2111 12344455555666666666666666666554433
No 105
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.91 E-value=7.9e-08 Score=94.24 Aligned_cols=153 Identities=15% Similarity=0.168 Sum_probs=73.4
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCC
Q 003449 639 YGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC----RNGR 714 (819)
Q Consensus 639 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~ 714 (819)
+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+. ..|. +...++.++. -.++
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchh
Confidence 34455555555554321 23444444555555566666666666555542 2221 1222222221 1223
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcH-HHHHHHH
Q 003449 715 MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQR-YEAITFV 792 (819)
Q Consensus 715 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~-~~A~~~~ 792 (819)
+++|..+|+++.+. +.++..+.+.++.++...|++++|.++++++.+. .| ++.++..++-+....|+. +.+.+++
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 56666666665443 3445555555666666666666666666665542 23 445555555555555555 4455555
Q ss_pred HHhhhcCCCCC
Q 003449 793 NNLSKLDPHVT 803 (819)
Q Consensus 793 ~~~~~~~p~~~ 803 (819)
.++....|+.+
T Consensus 260 ~qL~~~~p~h~ 270 (290)
T PF04733_consen 260 SQLKQSNPNHP 270 (290)
T ss_dssp HHCHHHTTTSH
T ss_pred HHHHHhCCCCh
Confidence 55555555543
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.90 E-value=1.1e-07 Score=93.32 Aligned_cols=252 Identities=12% Similarity=0.075 Sum_probs=144.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 003449 499 YSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQM 578 (819)
Q Consensus 499 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 578 (819)
+.-.|.+..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566665554443 111111112333344455666666655433 3333322 45555554444433333444555
Q ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 003449 579 LALSEEIYSGIIE-PHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMND 657 (819)
Q Consensus 579 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 657 (819)
+.-+++.+..... .+.......+.++...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5444444333222 22333333445666778888777776542 3566677777888888888888888888887
Q ss_pred CCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003449 658 SGFTPSLTTYNTLMYMYS----RSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD 733 (819)
Q Consensus 658 ~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 733 (819)
.. .|.. ...++.++. -.+.+++|..+|+++.+. +.+++.+.+.++.++...|++++|.+++++..+.+. -+
T Consensus 160 ~~--eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~ 234 (290)
T PF04733_consen 160 ID--EDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-ND 234 (290)
T ss_dssp CS--CCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CH
T ss_pred cC--CcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CC
Confidence 53 3433 333333332 233688889999987664 566788888888888889999999998888776432 25
Q ss_pred HHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCC
Q 003449 734 VITYNTFVASYAADSLF-VEALDVVRYMIKQGCKPN 768 (819)
Q Consensus 734 ~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~ 768 (819)
..++.+++.+....|+. +.+.+++..+... .|+
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~ 268 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPN 268 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTT
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCC
Confidence 56777788777788876 6677788877763 454
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=3.2e-07 Score=92.76 Aligned_cols=260 Identities=14% Similarity=0.117 Sum_probs=188.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 003449 497 SAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREID 576 (819)
Q Consensus 497 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 576 (819)
.-+.+.|++.+|.-.|+..+..+.. +...|..|.......++-..|+..+++..+.+ +.+....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 3467889999999999999988665 78999999999999999999999999999864 445667888888899999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH-HHH
Q 003449 577 QMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEIL-HFM 655 (819)
Q Consensus 577 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-~~~ 655 (819)
+|+..++..+....+ ...... -...++...- . -.++...+ ....++| +..
T Consensus 371 ~Al~~L~~Wi~~~p~-y~~l~~-----a~~~~~~~~~---------~-s~~~~~~l-------------~~i~~~fLeaa 421 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-YVHLVS-----AGENEDFENT---------K-SFLDSSHL-------------AHIQELFLEAA 421 (579)
T ss_pred HHHHHHHHHHHhCcc-chhccc-----cCccccccCC---------c-CCCCHHHH-------------HHHHHHHHHHH
Confidence 999999988775421 110000 0000000000 0 01122222 2223333 333
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003449 656 NDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI 735 (819)
Q Consensus 656 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 735 (819)
...+..+|..+...|.-.|.-.|++++|.+.|+.++... +-|..+||-|...++...+.++|+..|.++++ +.|..+
T Consensus 422 ~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yV 498 (579)
T KOG1125|consen 422 RQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYV 498 (579)
T ss_pred HhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCee
Confidence 444545788888899999999999999999999999853 22688999999999999999999999999998 677765
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHHHc---CC------CCCHHHHHHHHHHHHhcCcHHHHHH
Q 003449 736 -TYNTFVASYAADSLFVEALDVVRYMIKQ---GC------KPNQNTYNSIVDGYCKLNQRYEAIT 790 (819)
Q Consensus 736 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~------~p~~~~~~~l~~~~~~~g~~~~A~~ 790 (819)
+...|+-.|...|.|++|.+++-.++.. +. .++..+|..|-.++...++.|-+..
T Consensus 499 R~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 499 RVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred eeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 6667888899999999999998887642 11 1134678877777777777664443
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.86 E-value=1.7e-05 Score=94.26 Aligned_cols=335 Identities=10% Similarity=-0.001 Sum_probs=182.1
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC------CCC--HHhHHHHHHHHH
Q 003449 254 GKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGF------SPD--KVTYNALLDVYG 325 (819)
Q Consensus 254 ~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~------~~~--~~~~~~l~~~~~ 325 (819)
...| ++..+..+++.+.......+..........+...|++++|...+......-- .+. ......+...+.
T Consensus 385 ~~~g-~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 385 FNQG-ELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HhcC-ChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3445 5555555555442111111222223334444566777777777766543210 011 112222334455
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHh
Q 003449 326 KCRRPKEAMQVLREMKINGCLPS----IVTYNSLISAYARDGLLEEAMELKTQMVEI----GIT-PDVFTYTTLLSGFEK 396 (819)
Q Consensus 326 ~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-pd~~~~~~l~~~~~~ 396 (819)
..|++++|...+++....-...+ ....+.+...+...|++++|...+.+.... |.. ....++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 67777777777777654211111 123455566667777887777777776542 111 112244555666677
Q ss_pred cCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhC----CCCCCHHHHHHHHHHHH
Q 003449 397 AGKDESAMKVFEEMRS----AGCK--P-NICTFNALIKMHGNRGNFVEMMKVFDEINKC----NCKPDIVTWNTLLAVFG 465 (819)
Q Consensus 397 ~g~~~~A~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~ 465 (819)
.|++++|...+++... .+.. + ....+..+...+...|++++|...+++.... +.......+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 7888887777766543 2211 1 2233445556666678888887777765432 11112334445566677
Q ss_pred hcCChHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh
Q 003449 466 QNGMDSEVSGVFKEMKRAG--FIPERD--TF--NTLISAYSRCGSFDQAMSIYKRMLEAGVTPD---LSTYNAVLAALAR 536 (819)
Q Consensus 466 ~~g~~~~a~~~~~~m~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 536 (819)
..|+.++|...++...... ...... .. ...+..+...|+.+.|.+++........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 7788888877777664421 110111 11 1122444557788888888766544221111 1113455667778
Q ss_pred cCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 003449 537 GGMWEQSEKIFAEMKGG----RCKPN-ELTYSSLLHAYANGREIDQMLALSEEIYSGI 589 (819)
Q Consensus 537 ~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 589 (819)
.|++++|...+++.... +...+ ..+...+..++...|+.++|...+.+.++..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88888888888776542 22222 2355566667888888888888888887754
No 109
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.82 E-value=0.00023 Score=71.88 Aligned_cols=418 Identities=11% Similarity=0.095 Sum_probs=207.1
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003449 171 LRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVIL 250 (819)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 250 (819)
-+...|..+|+-+... .+++++..++++... ++-....|..-|..-.+..+++..+.+|.+.+.. ..+...|...+
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl 93 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYL 93 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHH
Confidence 3566677777766555 777777777777654 4446667777777777777777777777776654 33566666666
Q ss_pred HHHHhcCCCHH----HHHHHHHH-HHhCCCCCCH-HHHHHHHHH---------HHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 003449 251 NVYGKMGMPWN----KIMALVEG-MKSAGVKPDS-YTFNTLISC---------CRRGSLHEEAAGVFEEMKLAGFSPDKV 315 (819)
Q Consensus 251 ~~~~~~g~~~~----~a~~~~~~-~~~~g~~p~~-~~~~~ll~~---------~~~~g~~~~A~~~~~~~~~~~~~~~~~ 315 (819)
..-.+...... ...+.|+- +.+.|+.+-+ ..|+..+.. +..+.+++..++++++++..-+..=..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 55443321211 12222322 2334544332 234444332 333445666777777777652221111
Q ss_pred hHH----------HHH-HHH--HhCCCHHHHHHHHHHHHHC--CCCCCHhh---------------HHHHHHHHHHcCCH
Q 003449 316 TYN----------ALL-DVY--GKCRRPKEAMQVLREMKIN--GCLPSIVT---------------YNSLISAYARDGLL 365 (819)
Q Consensus 316 ~~~----------~l~-~~~--~~~g~~~~A~~~~~~~~~~--g~~~~~~~---------------~~~li~~~~~~g~~ 365 (819)
.|+ .+. .-+ -+...+..|+++++++... |...+..+ |..+|..--.++.-
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 121 111 111 1234566777887776532 33222221 33333322111110
Q ss_pred --------HHHHHHHHH-HHHcCCCCCHHH-HHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003449 366 --------EEAMELKTQ-MVEIGITPDVFT-YTTL----LSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGN 431 (819)
Q Consensus 366 --------~~A~~~~~~-m~~~g~~pd~~~-~~~l----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 431 (819)
....=.+++ |.-.+..|+... |... -+.+...|+...|.
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~--------------------------- 306 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAK--------------------------- 306 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccch---------------------------
Confidence 000000110 111122222110 0000 00111111111111
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH---hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003449 432 RGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFG---QNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQA 508 (819)
Q Consensus 432 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 508 (819)
..-+++..+++.....-..-+...|..+...-- +....+...+.++++...-...-..+|..+++...+..-+..|
T Consensus 307 -~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaa 385 (656)
T KOG1914|consen 307 -SLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAA 385 (656)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHH
Confidence 112344444444433222223333333332111 1112444555555555442222334566677777777777777
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 003449 509 MSIYKRMLEAGVTP-DLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYS 587 (819)
Q Consensus 509 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 587 (819)
..+|.++.+.+..+ ++..+++++..+| .++.+-|.++|+--.+. +..+..--...+.-+...++-..+..+|+.++.
T Consensus 386 R~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 386 RKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 77777777765554 6666777777666 45667777777764443 122233334455556667777777777777777
Q ss_pred CCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003449 588 GIIEPH--AVLLKTLILVYSKSDLLMDTERAFLELKK 622 (819)
Q Consensus 588 ~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 622 (819)
...+++ ..+|..++..-...|++..+.++-+++..
T Consensus 464 s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 464 SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 644443 56777777777777888777777666553
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.81 E-value=2.3e-07 Score=81.04 Aligned_cols=115 Identities=12% Similarity=0.070 Sum_probs=92.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 684 EDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 684 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
..++++.++. .|+ .+..+...+...|++++|...|+.+... .| +...|..++.++...|++++|+..++++++
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4566666663 344 3556777888899999999999998874 34 566888888899999999999999999998
Q ss_pred cCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHH
Q 003449 763 QGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 763 ~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
+.| +...+..++.++...|++++|+..++++++..|++....
T Consensus 87 --l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 87 --LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred --cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 456 778888999999999999999999999999999886665
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.80 E-value=1.4e-06 Score=80.54 Aligned_cols=160 Identities=8% Similarity=0.060 Sum_probs=118.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003449 636 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM 715 (819)
Q Consensus 636 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 715 (819)
+..|...|+++.+....+.+.. |. ..+...++.+++...+++.++.+ +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3456777887776444332221 11 01223667788888888888764 34788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-HhcCC--hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHH
Q 003449 716 KEASRIFSEMRDSGLVP-DVITYNTFVASY-AADSL--FVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAIT 790 (819)
Q Consensus 716 ~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~ 790 (819)
++|...|++..+. .| +...+..++.++ ...|+ .++|..+++++++ ..| +...+..++..+.+.|++++|+.
T Consensus 90 ~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 90 DNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999884 44 556777888764 67677 5999999999998 456 77888899999999999999999
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHH
Q 003449 791 FVNNLSKLDPHVTKELECKLSDRI 814 (819)
Q Consensus 791 ~~~~~~~~~p~~~~~~~~~l~~~l 814 (819)
.++++++..|.++.- ..+|..+
T Consensus 166 ~~~~aL~l~~~~~~r--~~~i~~i 187 (198)
T PRK10370 166 LWQKVLDLNSPRVNR--TQLVESI 187 (198)
T ss_pred HHHHHHhhCCCCccH--HHHHHHH
Confidence 999999998876543 2333544
No 112
>PLN02789 farnesyltranstransferase
Probab=98.80 E-value=6.2e-06 Score=82.10 Aligned_cols=221 Identities=10% Similarity=0.082 Sum_probs=131.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hHHH
Q 003449 572 GREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSD-LLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQM--VAKT 648 (819)
Q Consensus 572 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A 648 (819)
.+..++|+.+..+++... +.+..++.....++...| .+++++..++++.+... .+..+|+.....+.+.|. .+++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhHHH
Confidence 344455555555555432 223333333344444444 45666666666665432 244455544444444454 2566
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC----HHHHHHH
Q 003449 649 NEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN---GR----MKEASRI 721 (819)
Q Consensus 649 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~~~ 721 (819)
++.++.+.+.. +-+..+|+....++...|+++++++.++++++.+.. |...|+.....+.+. |. .+++.++
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 77777777654 456677777777888888888888888888876533 566676666555444 22 2456667
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC------------
Q 003449 722 FSEMRDSGLVP-DVITYNTFVASYAAD----SLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLN------------ 783 (819)
Q Consensus 722 ~~~~~~~g~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g------------ 783 (819)
..+++.. .| |...|+.+...+... ++..+|.+.+.+..+. .| +...+..|++.|+...
T Consensus 206 ~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 206 TIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--DSNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--cCCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 7666663 33 445677777766662 3445677777776653 44 5566677777776532
Q ss_pred ------cHHHHHHHHHHhhhcCC
Q 003449 784 ------QRYEAITFVNNLSKLDP 800 (819)
Q Consensus 784 ------~~~~A~~~~~~~~~~~p 800 (819)
..++|.++++.+.+.+|
T Consensus 282 ~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 282 LAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred cccccccHHHHHHHHHHHHhhCc
Confidence 34678888888855444
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.77 E-value=2.1e-06 Score=89.34 Aligned_cols=214 Identities=14% Similarity=0.131 Sum_probs=105.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003449 563 SSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRR 642 (819)
Q Consensus 563 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 642 (819)
..+...+.+.|-...|+.+++.+. .+..++.+|+..|+..+|..+..+..++ +|+...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 334444555555555555555432 2344455555555555555555554442 44555555555555544
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003449 643 QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIF 722 (819)
Q Consensus 643 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 722 (819)
.-+++|.++.+..... .-..+.......++++++.+.|+.-.+.+ .--..+|..+..+..+.++++.|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 4555555555443221 11111112223455555555555554432 113445555555555555555555555
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc
Q 003449 723 SEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 723 ~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
..... ..||. ..|+++..+|.+.++-.+|...++++.+.+ .-+-.+|.+......+.|.+++|++.++++...
T Consensus 543 ~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 543 HRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 55554 34433 355555555555555555555555555543 223344555555555555555555555555444
No 114
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.74 E-value=0.00073 Score=72.79 Aligned_cols=121 Identities=13% Similarity=0.131 Sum_probs=78.4
Q ss_pred HHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003449 667 YNTLMYMYSRSENFA---RAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 743 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 743 (819)
.+.+++.|.+.++.. +|+-+++...... +-|..+--.+++.|+-.|-+..|.++|+.+--..+..|...|.. ..-
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~ 516 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRR 516 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHH
Confidence 366778888888765 4555555555432 23556666778999999999999999999877667666554443 334
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHH
Q 003449 744 YAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITF 791 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 791 (819)
+...|++..|...+....+. +.. -..+-..++.+| +.|.+.+..++
T Consensus 517 ~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em 563 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPEM 563 (932)
T ss_pred HHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHHH
Confidence 56778999999988888763 111 123444444444 55565544443
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.73 E-value=1.9e-06 Score=83.68 Aligned_cols=190 Identities=13% Similarity=0.020 Sum_probs=120.5
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH---H
Q 003449 591 EPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFS-PD-IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSL---T 665 (819)
Q Consensus 591 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~---~ 665 (819)
+.....+...+..+...|++++|...|+++.+.... +. ..++..+..++.+.|++++|...++.+.+.. +.+. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHH
Confidence 344566667777777778888888888777665321 11 1355666777777788888888887777642 1111 1
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003449 666 TYNTLMYMYSRS--------ENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVIT 736 (819)
Q Consensus 666 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 736 (819)
++..+..++... |+.++|.+.++++++. .|+ ...+..+..... ... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~-------~~-------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN-------RL-------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH-------HH-------HHH
Confidence 344455555543 5677777777777764 233 222222111100 000 00 001
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC
Q 003449 737 YNTFVASYAADSLFVEALDVVRYMIKQGC-KP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 737 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
...++..+...|++++|+..++++++..- .| ....+..++.++.+.|++++|..+++.+....|+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 23566778999999999999999987421 23 3578899999999999999999999988776653
No 116
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=1.2e-05 Score=72.87 Aligned_cols=187 Identities=10% Similarity=0.079 Sum_probs=94.3
Q ss_pred ccCCHHHHHHHHHHHHhC---C-CCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003449 571 NGREIDQMLALSEEIYSG---I-IEPH-AVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMV 645 (819)
Q Consensus 571 ~~~~~~~a~~~~~~~~~~---~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 645 (819)
...+.++.++++.++... + ..++ ..++..++-+....|+...|...++.+.++- +.+...-..-+-.+...|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 355667777777766542 1 2222 2334445555555666666666666655542 11222211112223345556
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003449 646 AKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEM 725 (819)
Q Consensus 646 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 725 (819)
++|.++++.+.+.. +.|.+++-.-+...-..|.--+|++-+.+..+. +.-|...|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 66666666665543 344444544444444455555555555555554 3445556666666666666666666666665
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcC---ChHHHHHHHHHHHH
Q 003449 726 RDSGLVP-DVITYNTFVASYAADS---LFVEALDVVRYMIK 762 (819)
Q Consensus 726 ~~~g~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 762 (819)
+- +.| ++..+..++..++-.| +++-|.++|.+.++
T Consensus 181 ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 54 223 2333444555444333 34455555555555
No 117
>PLN02789 farnesyltranstransferase
Probab=98.70 E-value=1.1e-05 Score=80.42 Aligned_cols=204 Identities=7% Similarity=0.023 Sum_probs=153.6
Q ss_pred HhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH--
Q 003449 604 YSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQ-MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENF-- 680 (819)
Q Consensus 604 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-- 680 (819)
+...+..++|...+.++++... .+..+|+.-..++...| .++++++.++++.+.. +.+..+|+.....+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 3445788899999999987632 24556776666777777 6899999999999864 45666787777777777763
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC----hHHH
Q 003449 681 ARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD---SL----FVEA 753 (819)
Q Consensus 681 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g~----~~~A 753 (819)
++++.+++++++.+.+ |..+|+....++...|+++++++.++++++.+.. +..+|+.....+.+. |. .+++
T Consensus 125 ~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 7789999999986533 7889999999999999999999999999997554 566787777666554 32 3578
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHhc----CcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 003449 754 LDVVRYMIKQGCKP-NQNTYNSIVDGYCKL----NQRYEAITFVNNLSKLDPHVTKELECKLSDRI 814 (819)
Q Consensus 754 ~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l 814 (819)
+.+..++++ ..| |...|+.+...+... ++..+|.+++.++.+.+|+.+. .+.-|++.+
T Consensus 203 l~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~-al~~l~d~~ 265 (320)
T PLN02789 203 LKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVF-ALSDLLDLL 265 (320)
T ss_pred HHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHH-HHHHHHHHH
Confidence 888888888 467 788999999888873 4557799999998887776533 334444444
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.67 E-value=6e-06 Score=75.64 Aligned_cols=160 Identities=14% Similarity=0.044 Sum_probs=118.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003449 633 NAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN 712 (819)
Q Consensus 633 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 712 (819)
..+...+...|+-+....+....... .+.|.......+....+.|++..|...++++.... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 55566666677777777776665443 24565666677788888888888888888887653 45788888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHH
Q 003449 713 GRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITF 791 (819)
Q Consensus 713 g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 791 (819)
|++++|..-|.+..+. .| ++..+++++..|.-.|+++.|..++......+ .-|..+-..++......|++++|.++
T Consensus 148 Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 8888888888888874 33 45577788888888888888888888887642 22667777888888888888888887
Q ss_pred HHHhhh
Q 003449 792 VNNLSK 797 (819)
Q Consensus 792 ~~~~~~ 797 (819)
..+-+.
T Consensus 225 ~~~e~~ 230 (257)
T COG5010 225 AVQELL 230 (257)
T ss_pred cccccc
Confidence 665444
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.66 E-value=9.5e-06 Score=89.27 Aligned_cols=148 Identities=9% Similarity=-0.033 Sum_probs=101.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHH
Q 003449 661 TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYN 738 (819)
Q Consensus 661 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~ 738 (819)
+.+...+..|.......|.+++|..+++.+.+. .|+ ......++..+.+.+++++|+..+++.... .| +.....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 445666777777777777777777777777764 444 556666777777777777777777777764 33 334566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 003449 739 TFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIA 815 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~ 815 (819)
.++.++.+.|++++|..+|+++.+. .| +..++..++..+.+.|+.++|...|+++.+..-+-. ..|+.++..+.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~ 233 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA-RKLTRRLVDLN 233 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch-HHHHHHHHHHH
Confidence 6777777777777777777777762 34 467777777777777777777777777777654443 45555544443
No 120
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=2.1e-05 Score=71.91 Aligned_cols=248 Identities=15% Similarity=0.117 Sum_probs=141.9
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 003449 498 AYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQ 577 (819)
Q Consensus 498 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 577 (819)
-+.-.|.+..++..-....... -+...-..+..+|...|.+...+. ++.... .+.......+......-++.+.
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHH
Confidence 3444466655555444333321 233333334455555665433222 222222 3344444444443333444333
Q ss_pred HHH-HHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 003449 578 MLA-LSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMN 656 (819)
Q Consensus 578 a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 656 (819)
-+. +.+.+.......+......-+..|++.|++++|.+...... +......=+..+.+..+.+-|.+.++.|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 33333333333443444445566777888888877766522 23333333445566777888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003449 657 DSGFTPSLTTYNTLMYMYSR----SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP 732 (819)
Q Consensus 657 ~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 732 (819)
+. .+..+.+.|..++.+ .+.+.+|.-+|+++.++ ..|+..+.+..+.++...|++++|..++++.+.....
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~- 239 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK- 239 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-
Confidence 64 355667666666543 34677888888888764 5677888888888888888888888888888776433
Q ss_pred CHHHHHHHHHHHHhcCChHHHH-HHHHHHHH
Q 003449 733 DVITYNTFVASYAADSLFVEAL-DVVRYMIK 762 (819)
Q Consensus 733 ~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 762 (819)
++.++.+++.+-...|.-.++. +.+..+..
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 6677777777766777654443 44555544
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=4.2e-06 Score=87.18 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=56.1
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 003449 642 RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASR 720 (819)
Q Consensus 642 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 720 (819)
.++++++.+.|+.-.+.. +--..+|-.+..+..+.++++.|.+.|...... .|| ...||.+..+|.+.|+-.+|..
T Consensus 498 ~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred chhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHH
Confidence 444555555555444432 223344444444455555555555555554442 232 4455555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003449 721 IFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMI 761 (819)
Q Consensus 721 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 761 (819)
.+++..+.+.. +...|.+......+-|.+++|++.+.++.
T Consensus 575 ~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 575 KLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 55555554422 23344444444455555555555555554
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.63 E-value=1.9e-05 Score=87.61 Aligned_cols=150 Identities=13% Similarity=0.165 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003449 595 VLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMY 674 (819)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 674 (819)
.++..++.+|.+.|+.++|..+++++++.. +.|..+.|.++..|... ++++|.+++.+.... |
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~ 179 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------F 179 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------H
Confidence 345555555555555555555555555544 23555556666655555 566666655554432 3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHH
Q 003449 675 SRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS-GLVPDVITYNTFVASYAADSLFVEA 753 (819)
Q Consensus 675 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A 753 (819)
...+++..+.++|.++...... +...+ .++.+++..+ |..--..++..+...|-...+|+++
T Consensus 180 i~~kq~~~~~e~W~k~~~~~~~-d~d~f----------------~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHYNSD-DFDFF----------------LRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred HhhhcchHHHHHHHHHHhcCcc-cchHH----------------HHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 4444555666666666553211 12121 1222222221 1111122344444455555566666
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 003449 754 LDVVRYMIKQGCKP-NQNTYNSIVDGYC 780 (819)
Q Consensus 754 ~~~~~~~~~~g~~p-~~~~~~~l~~~~~ 780 (819)
+.+++.+++ +.| |......++.+|.
T Consensus 243 i~iLK~iL~--~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 243 IYILKKILE--HDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHh--cCCcchhhHHHHHHHHH
Confidence 666666666 344 4555555555554
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.60 E-value=2.1e-05 Score=87.27 Aligned_cols=238 Identities=12% Similarity=0.110 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003449 523 DLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNEL-TYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLI 601 (819)
Q Consensus 523 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 601 (819)
+...+..|+..+...+++++|.++.++..+. .|+.. .|..+...+.+.++..++..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 4566677777777778888888877766654 34433 222233344445544433332 233
Q ss_pred HHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003449 602 LVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFA 681 (819)
Q Consensus 602 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 681 (819)
.......++.-...++..+.+. ..+..++..++.+|.+.|+.++|..+++++.+.. +-|..+.|.++..|... +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 3344444554444445555553 2344577778888888888888888888888875 56777788888888888 888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003449 682 RAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMI 761 (819)
Q Consensus 682 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 761 (819)
+|++++.+++.. +...+++.++.++|.++.+. .|+.. +.-..+.+++.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~---------------d~f~~i~~ki~ 214 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDF---------------DFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--Ccccc---------------hHHHHHHHHHH
Confidence 888888877763 55556788888888888774 33222 22222333333
Q ss_pred Hc-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Q 003449 762 KQ-GCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAK 816 (819)
Q Consensus 762 ~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~~ 816 (819)
.. |..--..++.-+-..|.+.++|++++.+++.+++.+|.+... ...|+..+.+
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a-~~~l~~~y~~ 269 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKA-REELIRFYKE 269 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhh-HHHHHHHHHH
Confidence 21 222234456667778889999999999999999999998666 3455555544
No 124
>PF12854 PPR_1: PPR repeat
Probab=98.59 E-value=6.4e-08 Score=59.37 Aligned_cols=32 Identities=50% Similarity=0.786 Sum_probs=14.9
Q ss_pred CCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHH
Q 003449 309 GFSPDKVTYNALLDVYGKCRRPKEAMQVLREM 340 (819)
Q Consensus 309 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 340 (819)
|+.||..+||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 125
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.58 E-value=3.6e-05 Score=86.01 Aligned_cols=204 Identities=12% Similarity=0.062 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003449 525 STYNAVLAALARGGMWEQSEKIFAEMKGGR-CK---PNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTL 600 (819)
Q Consensus 525 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 600 (819)
..|-..+....+.++.++|.+++++.+..= +. -....|.++++.-..-|.-+...+.|+++.+. ......+..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHH
Confidence 334444444444445555555544444320 00 01123344444333344444444445444432 1223344455
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhc
Q 003449 601 ILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS---LTTYNTLMYMYSRS 677 (819)
Q Consensus 601 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~ 677 (819)
...|.+.+.+++|.++++.|.+. +......|...+..+.+..+-++|..++.++++. -|. .......+..-.+.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhc
Confidence 55555555555666666655543 1234556666666666666666666666666654 222 22334445555666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003449 678 ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV 734 (819)
Q Consensus 678 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 734 (819)
|+.+++..+|+..+... +-....|+.+++.-.++|+.+.++.+|++++..++.|-.
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 77777777777766542 224667777777777777777777777777776665544
No 126
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.58 E-value=4.2e-05 Score=85.46 Aligned_cols=239 Identities=9% Similarity=0.088 Sum_probs=177.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CC---CCHHHHHHHHHHHhcCCCHHHHHHHH
Q 003449 542 QSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGI-IE---PHAVLLKTLILVYSKSDLLMDTERAF 617 (819)
Q Consensus 542 ~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 617 (819)
.|.+.-+.++.. +.....|-..|.-..+.++.++|.++.++++..- +. .-..+|.++++.....|.-+...++|
T Consensus 1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 344443334432 4445678888888889999999999999988743 11 12345666677767778888888999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003449 618 LELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKP 697 (819)
Q Consensus 618 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 697 (819)
+++.+.. .....|..|...|.+.+.+++|.++++.|.+. +.....+|..++..+.+..+-+.|..+++++++. -|
T Consensus 1521 eRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lP 1595 (1710)
T KOG1070|consen 1521 ERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LP 1595 (1710)
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cc
Confidence 9988762 23456888899999999999999999999886 3466778999999999999999999999998875 23
Q ss_pred C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CH-HHH
Q 003449 698 D---IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQ-NTY 772 (819)
Q Consensus 698 ~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~-~~~ 772 (819)
. .....-.+..-.+.|+.+.++.+|+..+..... -...|+.++..-.++|+.+.+.++|+++++.++.| .. ..|
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 3 445555666777889999999999998875222 45689999999999999999999999999988887 32 445
Q ss_pred HHHHHHHHhcCcHHHH
Q 003449 773 NSIVDGYCKLNQRYEA 788 (819)
Q Consensus 773 ~~l~~~~~~~g~~~~A 788 (819)
...+..--..|+-+.+
T Consensus 1675 KkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred HHHHHHHHhcCchhhH
Confidence 5555544455664333
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.56 E-value=3.3e-06 Score=73.65 Aligned_cols=115 Identities=12% Similarity=0.160 Sum_probs=90.8
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003449 686 VLREILAKGIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQG 764 (819)
Q Consensus 686 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 764 (819)
.+++++.. .| +......++..+...|++++|.+.++++...+ ..+...+..++.++...|++++|..+++.+++.+
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45556654 33 34556677788888899999999998888753 2256788888888999999999999999988742
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCH
Q 003449 765 CKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 765 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
..+...+..++.+|...|++++|...++++.+.+|++..
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 336788888999999999999999999999999988765
No 128
>PF12854 PPR_1: PPR repeat
Probab=98.54 E-value=1.1e-07 Score=58.31 Aligned_cols=32 Identities=50% Similarity=0.958 Sum_probs=21.0
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 003449 344 GCLPSIVTYNSLISAYARDGLLEEAMELKTQM 375 (819)
Q Consensus 344 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 375 (819)
|+.||..||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.49 E-value=4.2e-05 Score=70.28 Aligned_cols=160 Identities=13% Similarity=0.027 Sum_probs=126.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 003449 598 KTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRS 677 (819)
Q Consensus 598 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 677 (819)
..+...+...|+-+....+........ ..|......++....+.|++.+|...+.+..... ++|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 444555555666666666655544321 3355666678888899999999999999998864 78899999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003449 678 ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVV 757 (819)
Q Consensus 678 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 757 (819)
|+++.|..-|.+..+.. .-+...++.+...|.-.|+.+.|..++......+.. |..+-.+++......|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999999999863 235788888999999999999999999998875433 6677788888899999999999887
Q ss_pred HHHH
Q 003449 758 RYMI 761 (819)
Q Consensus 758 ~~~~ 761 (819)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 6654
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.49 E-value=1.2e-05 Score=70.32 Aligned_cols=122 Identities=9% Similarity=-0.071 Sum_probs=90.7
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003449 650 EILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG 729 (819)
Q Consensus 650 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 729 (819)
.++++..+. .|+ .+..+...+...|++++|...|+.++... +.+...|..++.++...|++++|...|++..+..
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345555543 344 34456777888899999999999888764 3367888888888999999999999999988743
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 003449 730 LVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGY 779 (819)
Q Consensus 730 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~ 779 (819)
..+...+..++.++...|++++|+..++.+++ +.| +...|...+.++
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASWSEIRQNAQ 136 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHH
Confidence 22566888888889999999999999999988 466 455555555544
No 131
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.49 E-value=2.7e-05 Score=72.12 Aligned_cols=124 Identities=10% Similarity=0.098 Sum_probs=97.1
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 003449 642 RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAY-CRNGR--MKEA 718 (819)
Q Consensus 642 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A 718 (819)
.++.+++...++...+.. +.+...|..+...|...|++++|...|++..+... .+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 566677777777777654 66778889999999999999999999999988642 3677888888764 67677 5899
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003449 719 SRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQ 769 (819)
Q Consensus 719 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 769 (819)
.+++++..+.+.. +..++..++..+...|++++|+..++++++. ..|+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~ 178 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRV 178 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCc
Confidence 9999999885332 5568888888999999999999999999885 24443
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=0.00032 Score=70.46 Aligned_cols=150 Identities=15% Similarity=0.030 Sum_probs=104.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcC
Q 003449 600 LILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS-LTTYNTLMYMYSRSE 678 (819)
Q Consensus 600 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 678 (819)
....+...|.+++|+..++.+.... +.|+.........+.+.++..+|.+.++++... .|+ ......+..+|.+.|
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcC
Confidence 3444556677788888888877652 234555566667778888888888888888775 344 455667777888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003449 679 NFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVR 758 (819)
Q Consensus 679 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 758 (819)
++++|+.+++...... +-|+..|..|..+|...|+..+|..... ..|...|++++|+..+.
T Consensus 389 ~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 389 KPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLM 449 (484)
T ss_pred ChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHH
Confidence 8888888888877653 4467888888888888887777665443 34667788888888888
Q ss_pred HHHHcCCCCCHHHH
Q 003449 759 YMIKQGCKPNQNTY 772 (819)
Q Consensus 759 ~~~~~g~~p~~~~~ 772 (819)
.+.+. ...+...|
T Consensus 450 ~A~~~-~~~~~~~~ 462 (484)
T COG4783 450 RASQQ-VKLGFPDW 462 (484)
T ss_pred HHHHh-ccCCcHHH
Confidence 77765 34554444
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.00024 Score=65.27 Aligned_cols=193 Identities=14% Similarity=0.101 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003449 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLI 286 (819)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll 286 (819)
++..-..+-++|...|.+..... .++.. -.|.......+-..+...+..-+...++.+.+.......+......-.
T Consensus 40 ~~e~d~y~~raylAlg~~~~~~~---eI~~~-~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa 115 (299)
T KOG3081|consen 40 DVELDVYMYRAYLALGQYQIVIS---EIKEG-KATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAA 115 (299)
T ss_pred hhHHHHHHHHHHHHccccccccc---ccccc-cCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhh
Confidence 34444445556666665443222 22221 123333333333333333312222333444444333333333333334
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH----c
Q 003449 287 SCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYAR----D 362 (819)
Q Consensus 287 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~ 362 (819)
..|++.|++++|.+...... +......=+..+.|..+++-|.+.+++|.+- .+..|.+.|..+|.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 44566666666665554411 2222222233444555666666666666542 244455555555443 2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003449 363 GLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSA 413 (819)
Q Consensus 363 g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 413 (819)
+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..++++.+.+
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3455555555555543 3455555555555555555555555555555544
No 134
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.40 E-value=5.3e-05 Score=73.54 Aligned_cols=60 Identities=15% Similarity=0.118 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003449 354 SLISAYARDGLLEEAMELKTQMVEIGI--TPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSA 413 (819)
Q Consensus 354 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 413 (819)
.+...|.+.|++++|+..+.+..+... +.....+..+..++...|+.++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344556666666666666666665421 112345556666666666666666666665543
No 135
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.39 E-value=0.00011 Score=80.98 Aligned_cols=134 Identities=8% Similarity=0.022 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003449 591 EPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTL 670 (819)
Q Consensus 591 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 670 (819)
+.+...+..|+.+..+.|.+++|..+++.+.+.. +.+......++..+.+.+++++|+...++..... +.+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 3445555555555555555666655555555542 1133444555555555555555555555555542 3333444555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003449 671 MYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 727 (819)
..++.+.|++++|.++|+++...+ .-+..++..+..++...|+.++|...|++..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555555532 11355555555555555555555555555554
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=0.00035 Score=70.18 Aligned_cols=138 Identities=17% Similarity=0.127 Sum_probs=66.2
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 003449 640 GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEA 718 (819)
Q Consensus 640 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 718 (819)
...|++++|+..++.+.... +-|...+....+.+.+.++.++|.+.++++... .|+ ......+..+|.+.|+.++|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 34445555555555544431 223333344444455555555555555555543 233 33444444555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc
Q 003449 719 SRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 719 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
+.+++...... .-|+..|..|+.+|...|+..+|.... +..|.-.|++++|+.++..+.+.
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence 55555544431 224445555555555555544443322 22233455666666666666665
Q ss_pred C
Q 003449 799 D 799 (819)
Q Consensus 799 ~ 799 (819)
.
T Consensus 455 ~ 455 (484)
T COG4783 455 V 455 (484)
T ss_pred c
Confidence 4
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=0.00061 Score=62.21 Aligned_cols=187 Identities=11% Similarity=0.079 Sum_probs=127.7
Q ss_pred cCCHHHHHHHHHHHHhC---C-CCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHH
Q 003449 537 GGMWEQSEKIFAEMKGG---R-CKPNEL-TYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLM 611 (819)
Q Consensus 537 ~g~~~~A~~~~~~m~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 611 (819)
..+.++..+++.++... | ..++.. .|..++-+....++.+.|...++++.... +.+......-+-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 45677888888777532 2 344444 34445556667888888888888877764 444444444455566778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003449 612 DTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREIL 691 (819)
Q Consensus 612 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 691 (819)
+|.++++.+++.+ +-|..++-.-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888888765 335555555555555667777787777777765 46788888888888888888888888888888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q 003449 692 AKGIKPDIISYNTVIFAYCRNG---RMKEASRIFSEMRD 727 (819)
Q Consensus 692 ~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 727 (819)
-.. +.+...+..+...+...| +++-|.++|.+.++
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 642 235555666665555444 46678888888777
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.31 E-value=3.8e-05 Score=67.56 Aligned_cols=126 Identities=13% Similarity=0.092 Sum_probs=89.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 003449 667 YNTLMYMYSRSENFARAEDVLREILAKGIKPD---IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV--ITYNTFV 741 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~ 741 (819)
|..++..+ ..++...+...++.+.+.... + ......+...+...|++++|...|+.+.+....++. .....++
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44444444 477888888888888875322 2 234444567888889999999999998886522221 2455678
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhh
Q 003449 742 ASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLS 796 (819)
Q Consensus 742 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 796 (819)
..+...|++++|+..++..... ...+..+...+++|.+.|++++|+..|++++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8888999999999998774332 2245677788999999999999999988763
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.29 E-value=3.7e-05 Score=66.97 Aligned_cols=116 Identities=12% Similarity=0.014 Sum_probs=84.0
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003449 651 ILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL 730 (819)
Q Consensus 651 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 730 (819)
.++...... +.+......++..+...|++++|.+.|+++...+ +.+...+..+..++...|++++|..++++..+.+
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 344454432 2234456667777888888888888888887754 3367788888888888888888888888887753
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003449 731 VPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNT 771 (819)
Q Consensus 731 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 771 (819)
..+...+..++.++...|++++|+..++++++ ..|+...
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccch
Confidence 22556777888888888889999888888887 4564443
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.28 E-value=3.9e-05 Score=77.87 Aligned_cols=128 Identities=17% Similarity=0.224 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003449 666 TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA 745 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 745 (819)
...+++..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|.+++++.++.. .-|...+...+..+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34556666667778888888888887753 44 33446677777777888888888877642 225666667777788
Q ss_pred hcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCC
Q 003449 746 ADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 746 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 800 (819)
+.++++.|+.+.+++.+ ..| +..+|..|+.+|.+.|++++|+..++.+.-..+
T Consensus 246 ~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTY 299 (395)
T ss_pred hcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence 88888888888888887 567 567888888888888888888888887765533
No 141
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.26 E-value=0.0065 Score=60.56 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=81.4
Q ss_pred HHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhc---CCHHHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 003449 674 YSRSEN-FARAEDVLREILAKGIKPDIISYNTVI----FAYCRN---GRMKEASRIFSEMRDSGLVPD----VITYNTFV 741 (819)
Q Consensus 674 ~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~----~~~~~~---g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~ 741 (819)
+-+.|+ -++|+++++.+++-. .-|...-|.+. .+|.+. ..+.+-.++-+-+.+.|+.|- ...-+.+.
T Consensus 389 lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 334454 788999999888641 22333333222 333321 223344444444445677653 23445555
Q ss_pred HH--HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 003449 742 AS--YAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 742 ~~--~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
++ +..+|++.++..+-.-+.+ +.|++.+|..++-++....+++||..+++.+.-
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 55 6789999999988888887 789999999999999999999999999988764
No 142
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.25 E-value=1.5e-05 Score=74.65 Aligned_cols=91 Identities=22% Similarity=0.318 Sum_probs=69.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHH
Q 003449 709 YCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRY 786 (819)
Q Consensus 709 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~ 786 (819)
+.+.++|++|+..|.++++ +.| |.+.|..-+.+|++.|.++.|++-.+.++. +.| -...|..|+.+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHH
Confidence 5667788888888888877 444 445566777778888888888888888877 566 4577888888888888888
Q ss_pred HHHHHHHHhhhcCCCCC
Q 003449 787 EAITFVNNLSKLDPHVT 803 (819)
Q Consensus 787 ~A~~~~~~~~~~~p~~~ 803 (819)
+|++.|+++++++|++.
T Consensus 167 ~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHHhhhccCCCcH
Confidence 88888888888888875
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.18 E-value=3.6e-05 Score=65.36 Aligned_cols=105 Identities=13% Similarity=0.106 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-CHHHHHHH
Q 003449 700 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV--PDVITYNTFVASYAADSLFVEALDVVRYMIKQGCK-P-NQNTYNSI 775 (819)
Q Consensus 700 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p-~~~~~~~l 775 (819)
.++..++..+.+.|++++|.+.|+++...... .....+..++.++...|++++|+.+++.+...... + ...++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35566677778888888888888888764211 11345667888888888888899888888864211 1 24667788
Q ss_pred HHHHHhcCcHHHHHHHHHHhhhcCCCCCH
Q 003449 776 VDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 776 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
+.++.+.|+.++|...++++.+..|++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 88888889999999999999888887744
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.11 E-value=0.00016 Score=63.61 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=89.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 003449 632 LNAMISIYGRRQMVAKTNEILHFMNDSGFTPSL---TTYNTLMYMYSRSENFARAEDVLREILAKGIKPD--IISYNTVI 706 (819)
Q Consensus 632 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~ 706 (819)
|..++..+ ..++...+.+.++.+.... +.+. ...-.+...+...|++++|...|+.+......++ ......+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 34444444 4677888888888888753 3332 2334456778889999999999999988653332 23455577
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003449 707 FAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYM 760 (819)
Q Consensus 707 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 760 (819)
..+...|++++|+..++...... .....+...+.+|.+.|++++|+..|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 88889999999999997744322 23456778888999999999999998875
No 145
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.11 E-value=7.5e-05 Score=63.85 Aligned_cols=97 Identities=10% Similarity=0.044 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 003449 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIV 776 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 776 (819)
......+...+...|++++|.++|+-+.. +.| +...|..|+.++-..|++++|+..|.++.. +.| |+..+..++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag 110 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHH
Confidence 33444556667788888888888888877 344 444667888888888888888888888887 445 678888888
Q ss_pred HHHHhcCcHHHHHHHHHHhhhcC
Q 003449 777 DGYCKLNQRYEAITFVNNLSKLD 799 (819)
Q Consensus 777 ~~~~~~g~~~~A~~~~~~~~~~~ 799 (819)
.++.+.|+.+.|++.|+.++..-
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 88888888888888888887765
No 146
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.05 E-value=7.6e-05 Score=76.47 Aligned_cols=89 Identities=13% Similarity=0.005 Sum_probs=55.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 003449 671 MYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSL 749 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 749 (819)
+..+...|++++|++.|+++++... -+...|..+..+|.+.|++++|+..++++++. .| +...|..++.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCC
Confidence 4445566677777777776666432 24556666666666667777777776666663 33 34456666666666677
Q ss_pred hHHHHHHHHHHHH
Q 003449 750 FVEALDVVRYMIK 762 (819)
Q Consensus 750 ~~~A~~~~~~~~~ 762 (819)
+++|+..++++++
T Consensus 86 ~~eA~~~~~~al~ 98 (356)
T PLN03088 86 YQTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766666
No 147
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.04 E-value=1.8e-05 Score=59.18 Aligned_cols=66 Identities=26% Similarity=0.347 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC-cHHHHHHHHHHhhhcCC
Q 003449 733 DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLN-QRYEAITFVNNLSKLDP 800 (819)
Q Consensus 733 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 800 (819)
+...|..++..+...|++++|+..++++++. .| +..+|..++.+|.+.| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567888999999999999999999999984 56 6788999999999999 79999999999999887
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.03 E-value=8.2e-05 Score=60.13 Aligned_cols=97 Identities=21% Similarity=0.252 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003449 702 YNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCK 781 (819)
Q Consensus 702 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 781 (819)
+..++..+...|++++|..+++++.+.. ..+...+..++.++...|++++|.+.++...+.+ ..+..++..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4556667777888888888888877642 2233567777778888888888888888887742 2245677788888888
Q ss_pred cCcHHHHHHHHHHhhhcCC
Q 003449 782 LNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 782 ~g~~~~A~~~~~~~~~~~p 800 (819)
.|++++|...++++.+..|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 8888888888888877765
No 149
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.02 E-value=0.017 Score=60.54 Aligned_cols=156 Identities=9% Similarity=0.001 Sum_probs=97.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 003449 292 GSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKIN-GCLPSIVTYNSLISAYARDGLLEEAME 370 (819)
Q Consensus 292 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~ 370 (819)
.|++++|++++-+|.+++ ..+..+.+.|++-...++++.-... ....-..+|+.+...++....+++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888888877663 2356777888887777776542111 011124568888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 003449 371 LKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNC 450 (819)
Q Consensus 371 ~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 450 (819)
.|..-.. ....+.++....++++-..+.+.+ +.+....-.+.+++...|.-++|.+.|-+...
T Consensus 818 yY~~~~~---------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~--- 880 (1189)
T KOG2041|consen 818 YYSYCGD---------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL--- 880 (1189)
T ss_pred HHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC---
Confidence 7765322 123456666666665544444333 33556667778888888888888877655321
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003449 451 KPDIVTWNTLLAVFGQNGMDSEVSGVFKE 479 (819)
Q Consensus 451 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 479 (819)
| ...+..|....++.+|.++-+.
T Consensus 881 -p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 881 -P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred -c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1234556666667777666544
No 150
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.00 E-value=1.7e-05 Score=58.45 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=51.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCC
Q 003449 739 TFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
.++..+...|++++|+..++.+++. .| +...+..++.++...|++++|..+++++++..|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3567788999999999999999985 46 67888899999999999999999999999998876
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.99 E-value=0.00026 Score=64.48 Aligned_cols=113 Identities=15% Similarity=0.115 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 003449 667 YNTLMYMYSRSENFARAEDVLREILAKGIKPD--IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVAS 743 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~ 743 (819)
+..+...+...|++++|...|+++++....+. ...+..++.++.+.|++++|...+++..+. .| +...+..++.+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 115 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 44445555555555555555555554321111 234445555555555555555555555542 22 22344444445
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCC
Q 003449 744 YAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
+...|+...+..-++.+.. .+++|.+.++++.+.+|++
T Consensus 116 ~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhCchh
Confidence 5555544444433332221 1678888999999988887
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.98 E-value=1.4e-05 Score=62.45 Aligned_cols=81 Identities=17% Similarity=0.301 Sum_probs=53.3
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHH
Q 003449 712 NGRMKEASRIFSEMRDSGLV-PDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAI 789 (819)
Q Consensus 712 ~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 789 (819)
.|++++|+.+++++.+.... ++...+..++.+|.+.|++++|+.++++ .+ ..+ +......++.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 56778888888887774321 2344555677888888888888888877 33 233 3355556678888888888888
Q ss_pred HHHHHh
Q 003449 790 TFVNNL 795 (819)
Q Consensus 790 ~~~~~~ 795 (819)
+.++++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 877764
No 153
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.0015 Score=64.06 Aligned_cols=154 Identities=13% Similarity=-0.038 Sum_probs=73.0
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHH-------------HHHH
Q 003449 569 YANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPT-------------LNAM 635 (819)
Q Consensus 569 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~l 635 (819)
+...+++++|...--.+++.. ..+...+..-..++...++.+.+...|++.+..+ |+... +..-
T Consensus 179 l~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhh
Confidence 344555555555555544432 2223333333334444555666666666655442 22211 1111
Q ss_pred HHHHHhcCChHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 003449 636 ISIYGRRQMVAKTNEILHFMNDS---GFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCR 711 (819)
Q Consensus 636 ~~~~~~~~~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 711 (819)
.+-..+.|.+.+|.+.+.+.+.. ...++...|.....+..+.|+..+|+.--+...+. .+. ...|..-..++..
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHH
Confidence 22234556666666666665543 22333344555555555666666666665555542 111 1222222344445
Q ss_pred cCCHHHHHHHHHHHHH
Q 003449 712 NGRMKEASRIFSEMRD 727 (819)
Q Consensus 712 ~g~~~~A~~~~~~~~~ 727 (819)
.++|++|++-+++..+
T Consensus 334 le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5566666666666555
No 154
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.94 E-value=0.0044 Score=53.75 Aligned_cols=134 Identities=10% Similarity=0.040 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 003449 626 SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIK-PDIISYNT 704 (819)
Q Consensus 626 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ 704 (819)
.|.+..-..|..+..+.|++.+|...|++...--+.-|...+-.+.++....+++..|...++++.+.... -.+.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34555556666677777777777777777665434456666666777777777777777777776654210 01334445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003449 705 VIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMI 761 (819)
Q Consensus 705 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 761 (819)
+.+.|...|++.+|..-|+.... ..|+...-..+...+.++|+.++|..-+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 56667777777777777777666 45555555555666667776666655444443
No 155
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.92 E-value=2e-05 Score=49.33 Aligned_cols=33 Identities=52% Similarity=0.831 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003449 351 TYNSLISAYARDGLLEEAMELKTQMVEIGITPD 383 (819)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 383 (819)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666655
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.92 E-value=0.00081 Score=72.00 Aligned_cols=140 Identities=15% Similarity=0.081 Sum_probs=93.7
Q ss_pred CCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 003449 661 TPSLTTYNTLMYMYSR--S---ENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRN--------GRMKEASRIFSEMR 726 (819)
Q Consensus 661 ~p~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~ 726 (819)
+.+...|..++.+... . ++.++|..+|+++++. .|+ ...|..+..++... +++..+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4556666666655322 2 2366777777777774 444 44444444333322 12334444444433
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCH
Q 003449 727 DS-GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 727 ~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
.. ....+...|..++..+...|++++|...++++++ +.|+...|..++..|...|+.++|.+.++++..++|..+.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 32 1233456777777777788999999999999998 4578888889999999999999999999999999998763
No 157
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.91 E-value=0.00093 Score=68.09 Aligned_cols=122 Identities=21% Similarity=0.241 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH
Q 003449 282 FNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYAR 361 (819)
Q Consensus 282 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 361 (819)
...|+..+...++++.|.++++++.+.. |+ ....++..+...++-.+|.+++++.... .+.+...+......+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Confidence 3344445555566666666666666552 33 2333555555555556666666665543 22244444445555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 003449 362 DGLLEEAMELKTQMVEIGITPDVF-TYTTLLSGFEKAGKDESAMKVFEEM 410 (819)
Q Consensus 362 ~g~~~~A~~~~~~m~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 410 (819)
.++++.|+++.+++.+. .|+.. +|..|..+|...|+++.|+..++.+
T Consensus 247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 66666666666665553 33332 5555666666666666665555543
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.00017 Score=67.77 Aligned_cols=94 Identities=17% Similarity=0.213 Sum_probs=46.5
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 003449 639 YGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKE 717 (819)
Q Consensus 639 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 717 (819)
..+.+++++|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+..+.. .|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 344455555555555555432 233444444555555555555555555555442 222 4455555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHH
Q 003449 718 ASRIFSEMRDSGLVPDVITY 737 (819)
Q Consensus 718 A~~~~~~~~~~g~~p~~~~~ 737 (819)
|++.|++.++ +.|+..+|
T Consensus 168 A~~aykKaLe--ldP~Ne~~ 185 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESY 185 (304)
T ss_pred HHHHHHhhhc--cCCCcHHH
Confidence 5555555554 44444443
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.90 E-value=0.0034 Score=62.34 Aligned_cols=123 Identities=15% Similarity=0.201 Sum_probs=57.5
Q ss_pred HHHhc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHH-HHHH
Q 003449 673 MYSRS-ENFARAEDVLREILAK----GIKPD--IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-----DVI-TYNT 739 (819)
Q Consensus 673 ~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-----~~~-~~~~ 739 (819)
.|... |++++|++.|+++.+. + .+. ...+..++..+.+.|++++|.++|+++...-... +.. .+..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 34444 5566666655555421 1 111 3344555666777777777777777766532211 111 2233
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 003449 740 FVASYAADSLFVEALDVVRYMIKQ--GCKPN--QNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 740 l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
.+-++...|+...|.+.+++.... ++..+ ......|+.++ +.|+.+...+.+...-.
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcc
Confidence 344556667777777777776642 11111 23444555554 44444333333333333
No 160
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.0028 Score=62.19 Aligned_cols=88 Identities=14% Similarity=0.105 Sum_probs=40.3
Q ss_pred HhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCcH
Q 003449 710 CRNGRMKEASRIFSEMRDS---GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQR 785 (819)
Q Consensus 710 ~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~ 785 (819)
.+.|++.+|.+.|.+.+.. +..++...|...+.+..+.|+.++|+.-.+++++ +.+. ...+..-+.++...++|
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555441 1222233444444445555555555555555544 2221 12233334444455555
Q ss_pred HHHHHHHHHhhhcC
Q 003449 786 YEAITFVNNLSKLD 799 (819)
Q Consensus 786 ~~A~~~~~~~~~~~ 799 (819)
++|.+-++++.+..
T Consensus 338 e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 338 EEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHhhc
Confidence 55555555555443
No 161
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.87 E-value=0.00085 Score=65.43 Aligned_cols=132 Identities=12% Similarity=0.066 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHH
Q 003449 666 TYNTLMYMYSRSENFARAEDVLREIL----AKGIK-PDIISYNTVIFAYCRNGRMKEASRIFSEMRDS----GL-VPDVI 735 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~-~p~~~ 735 (819)
.|..+.+.|.-.|+++.|+...+.-+ +.|-. .....+..+.+++.-.|+++.|.+.|+.-... |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34444555555566666655544322 11100 11345555666666666666666666554321 11 11222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 003449 736 TYNTFVASYAADSLFVEALDVVRYMIK----QG-CKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
....|+..|.-..++++|+.+..+-+. .+ ..-....+.+|+.++...|..++|..+.++.++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 444556666666666666666555332 11 111334556666666666776776666665544
No 162
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.86 E-value=0.04 Score=57.95 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003449 700 ISYNTVIFAYCRNGRMKEASRIFSEMRDS-GLVPDVITYNTFVASYAADSLFVEALDVVRYM 760 (819)
Q Consensus 700 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 760 (819)
..|..|+.-....|.++.|+..--.+... .+-|....|..++-+.|....+...-+.+-++
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 34444445455667777777654444332 24555666766666555554444433333333
No 163
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.85 E-value=0.0053 Score=53.24 Aligned_cols=133 Identities=14% Similarity=0.098 Sum_probs=110.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 003449 661 TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG---LVPDVITY 737 (819)
Q Consensus 661 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---~~p~~~~~ 737 (819)
.|+...-..+..+..+.|+..+|...|++...--+.-|......+.++....++..+|...++++.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 577777778899999999999999999999875455688899999999999999999999999998853 2344 55
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 003449 738 NTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 738 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
..++..|...|++++|...++.++. .-|++..-...+..+.++|+.++|...+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 6678899999999999999999998 567766665667778899998888776655543
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.83 E-value=0.00054 Score=62.16 Aligned_cols=122 Identities=15% Similarity=0.140 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHH
Q 003449 680 FARAEDVLREILAK-GIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP--DVITYNTFVASYAADSLFVEALDV 756 (819)
Q Consensus 680 ~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~ 756 (819)
+..+...+..+.+. +..-....|..++..+...|++++|...|++.......+ ...++..++.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444455444322 111124555666666777777778777777776642221 123677777777778888888888
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHH-------hcCcHH-------HHHHHHHHhhhcCCCCC
Q 003449 757 VRYMIKQGCKP-NQNTYNSIVDGYC-------KLNQRY-------EAITFVNNLSKLDPHVT 803 (819)
Q Consensus 757 ~~~~~~~g~~p-~~~~~~~l~~~~~-------~~g~~~-------~A~~~~~~~~~~~p~~~ 803 (819)
++++++. .| ....+..++..+. +.|+++ +|..+++++...+|.+.
T Consensus 95 ~~~Al~~--~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 95 YFQALER--NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHh--CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 8777763 34 4455556666665 666655 56666667777777653
No 165
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.82 E-value=0.045 Score=54.66 Aligned_cols=135 Identities=13% Similarity=0.181 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 003449 664 LTTYNTLMYMYSRSENFARAEDVLREILAKG-IKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITY-NTFV 741 (819)
Q Consensus 664 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~ 741 (819)
..+|...++.-.+...++.|..+|-++.+.+ ..+++..+++++..++ .|+...|.++|+--... -||...| ....
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3556777777777777888888888888776 4567777777777555 46777788887765542 3344433 3455
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCC
Q 003449 742 ASYAADSLFVEALDVVRYMIKQGCKPN--QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 742 ~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
.-+..-++-..|..+++..++. +..+ ..+|..++..-...|+...+..+-+++.+.-|..
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 5566777777888888876653 3333 4677777777778888888888777777776654
No 166
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.81 E-value=4e-05 Score=47.97 Aligned_cols=33 Identities=39% Similarity=0.677 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003449 210 AYTSLITTYASNGRYREAVMVFKKMEEEGCKPT 242 (819)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 242 (819)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777765
No 167
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.80 E-value=0.049 Score=58.02 Aligned_cols=18 Identities=11% Similarity=0.163 Sum_probs=8.7
Q ss_pred CHHhHHHHHHHHHhCCCH
Q 003449 313 DKVTYNALLDVYGKCRRP 330 (819)
Q Consensus 313 ~~~~~~~l~~~~~~~g~~ 330 (819)
|..+|.-=|+.+|+..+.
T Consensus 837 Na~afgF~is~L~kL~dT 854 (1102)
T KOG1924|consen 837 NAQAFGFNISFLCKLRDT 854 (1102)
T ss_pred cchhhccchHHHHhhccc
Confidence 444444445555554443
No 168
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.77 E-value=5e-05 Score=47.10 Aligned_cols=32 Identities=41% Similarity=0.651 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003449 351 TYNSLISAYARDGLLEEAMELKTQMVEIGITP 382 (819)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 382 (819)
+|+.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444433
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.75 E-value=0.00096 Score=65.88 Aligned_cols=128 Identities=12% Similarity=0.119 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003449 632 LNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYM-YSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC 710 (819)
Q Consensus 632 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 710 (819)
|..++...-+.+..+.|..+|.+..+.+ ..+..+|...+.. |...++.+.|.++|+..++. +..+...|...++.+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 3444444444444555555555554321 1122233332222 11233444455555554443 2334444444445555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 711 RNGRMKEASRIFSEMRDSGLVPDV---ITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 711 ~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
..|+.+.|+.+|++.+.. +.++. ..|..++..-.+.|+.+.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555554432 11111 2444444444444444444444444444
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.73 E-value=9.7e-05 Score=54.97 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=46.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCC
Q 003449 745 AADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 745 ~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
...|++++|+.+++++.+. .| +..++..++.+|.+.|++++|..+++++...+|++
T Consensus 2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 4678888999999998874 45 77888888889999999999999999998888885
No 171
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0016 Score=61.94 Aligned_cols=121 Identities=15% Similarity=0.093 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC---ChHHHHH
Q 003449 680 FARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADS---LFVEALD 755 (819)
Q Consensus 680 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g---~~~~A~~ 755 (819)
.+....-++.-+..+ +-|...|..|...|...|+++.|...|.+..+ +.| +...+..++.++..+. +..++..
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 334444445445543 33788999999999999999999999999888 333 4556677777765432 3678889
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 756 VVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 756 ~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
+++++++ ..| |......|+..+..+|++.+|...++.|++..|.+.+-
T Consensus 215 ll~~al~--~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 215 LLRQALA--LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 9999988 456 67778888889999999999999999999998877543
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.73 E-value=0.0011 Score=56.89 Aligned_cols=96 Identities=9% Similarity=-0.001 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003449 666 TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA 745 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 745 (819)
..-.+..-+...|++++|..+|+-+...+. -+..-|..|.-++...|++++|+..|........ -|+..+-.++.++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 344555667788889999998888877532 2567777888888888889999999888887543 36677888888888
Q ss_pred hcCChHHHHHHHHHHHHc
Q 003449 746 ADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 746 ~~g~~~~A~~~~~~~~~~ 763 (819)
..|+.+.|.+.|+.++..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 899999998888888763
No 173
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.71 E-value=6.1e-05 Score=46.69 Aligned_cols=33 Identities=33% Similarity=0.622 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003449 209 YAYTSLITTYASNGRYREAVMVFKKMEEEGCKP 241 (819)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 241 (819)
.+|+.++++|++.|+++.|..+|+.|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666554
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.71 E-value=8.4e-05 Score=58.05 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=53.1
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHH
Q 003449 677 SENFARAEDVLREILAKGIK-PDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEAL 754 (819)
Q Consensus 677 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~ 754 (819)
.|+++.|+.+++++.+.... ++...+..++.+|.+.|++++|..++++ .+ ..++ ......++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46788888888888765321 2344555577888888888888888877 32 2222 234445577788888888888
Q ss_pred HHHHHH
Q 003449 755 DVVRYM 760 (819)
Q Consensus 755 ~~~~~~ 760 (819)
++++++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 887753
No 175
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.70 E-value=0.0065 Score=62.98 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 003449 384 VFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAV 463 (819)
Q Consensus 384 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 463 (819)
.+.+.+-+-.|...|.+++|.++-- .|+ ...-|..|.......=+++-|.+.+.+....
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iac----lgV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl--------------- 614 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIAC----LGV--TDTDWRELAMEALEALDFETARKAYIRVRDL--------------- 614 (1081)
T ss_pred cccccccchhhhhccchhhhhcccc----cce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhcc---------------
Confidence 3344444556677777777765421 111 1222344443333444555555555554322
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003449 464 FGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKR 514 (819)
Q Consensus 464 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 514 (819)
.+-+.+.-++++.++|-.|+... +...++-.|++.+|.++|.+
T Consensus 615 -----~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 615 -----RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred -----HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 22334445677888887777654 44556677888888887754
No 176
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.70 E-value=0.063 Score=52.69 Aligned_cols=283 Identities=12% Similarity=0.062 Sum_probs=168.9
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHccCCHH
Q 003449 503 GSFDQAMSIYKRMLEAGVTPDLSTYNAVLAA--LARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLH----AYANGREID 576 (819)
Q Consensus 503 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~----~~~~~~~~~ 576 (819)
|+-..|.++-.+..+. +..|.....-++.+ -.-.|++++|.+-|+.|.+ |..+-..=+. .-.+.|+.+
T Consensus 98 Gda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 98 GDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred CchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHH
Confidence 4555565555443321 12233333333332 2346777777777777775 2222222222 223467777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHH--H-hcCChHHHHH
Q 003449 577 QMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKG-FSPDIPT--LNAMISIY--G-RRQMVAKTNE 650 (819)
Q Consensus 577 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~--~-~~~~~~~A~~ 650 (819)
.|....+.....- +.-.......+...|..|+++.|+++++.-.... +.++..- -..|+.+- . -..+...|..
T Consensus 172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 7777777666543 3334555666777777788888887777655422 2233221 12222211 1 1234556666
Q ss_pred HHHHHhhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 003449 651 ILHFMNDSGFTPSLTT-YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS- 728 (819)
Q Consensus 651 ~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 728 (819)
.-.+..+. .||..- --....++.+.|+..++-.+++.+-+....|+ .+.. ..+.+.|+ .+..-+++..+.
T Consensus 251 ~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~l--Y~~ar~gd--ta~dRlkRa~~L~ 322 (531)
T COG3898 251 DALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALL--YVRARSGD--TALDRLKRAKKLE 322 (531)
T ss_pred HHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHH--HHHhcCCC--cHHHHHHHHHHHH
Confidence 55555543 455443 23345678999999999999999998754444 4332 23455565 344444443331
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CcHHHHHHHHHHhhhcCCCC
Q 003449 729 GLVPD-VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKL-NQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 729 g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~ 802 (819)
.++|| ......++.+-...|++..|..--+.+.. ..|...+|..+++.-... ||-.++..++-++.+.-.++
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 24454 45677888888999999999988888877 678888898888887654 99999999999988764443
No 177
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.69 E-value=0.073 Score=53.43 Aligned_cols=135 Identities=13% Similarity=0.105 Sum_probs=64.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HH
Q 003449 219 ASNGRYREAVMVFKKMEEEGCKPT------LITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISC--CR 290 (819)
Q Consensus 219 ~~~g~~~~A~~~~~~m~~~~~~~~------~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~--~~ 290 (819)
-+++++.+|..+|.++.+.- ..+ .+..+.++++|.... .+.....+....+.- | ...|..+..+ +.
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~n--ld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLNN--LDLMEKQLMELRQQF--G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHhh--HHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence 35666666666666665431 111 233456666666554 444444444444321 1 1223333322 44
Q ss_pred cCCCHHHHHHHHHHHHHC--CCCC------------CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCCHhhH
Q 003449 291 RGSLHEEAAGVFEEMKLA--GFSP------------DKVTYNALLDVYGKCRRPKEAMQVLREMKIN----GCLPSIVTY 352 (819)
Q Consensus 291 ~~g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~~~~~~~ 352 (819)
+.+.+.+|.+.+...... +..+ |...-+..+..+.+.|++.+++.++++|... .+.-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 666777777666555443 1111 1111233445555666666666665555432 222445555
Q ss_pred HHHHHHH
Q 003449 353 NSLISAY 359 (819)
Q Consensus 353 ~~li~~~ 359 (819)
+.++-.+
T Consensus 171 d~~vlml 177 (549)
T PF07079_consen 171 DRAVLML 177 (549)
T ss_pred HHHHHHH
Confidence 5544444
No 178
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.69 E-value=0.00099 Score=56.38 Aligned_cols=98 Identities=15% Similarity=0.069 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 003449 666 TYNTLMYMYSRSENFARAEDVLREILAKGIK--PDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV--PDVITYNTFV 741 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~l~ 741 (819)
++..++..+.+.|++++|.+.|+++.+.... .....+..++.++.+.|++++|...++++...... .....+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4556677778888888888888888764211 11346666788888888888899988888764211 1235677788
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 003449 742 ASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 742 ~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
.++...|++++|...++++++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 8888888999999999888874
No 179
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.68 E-value=0.0021 Score=63.82 Aligned_cols=124 Identities=12% Similarity=0.152 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHH
Q 003449 679 NFARAEDVLREILA----KGIKPD--IISYNTVIFAYCRN-GRMKEASRIFSEMRDS----GLVPD--VITYNTFVASYA 745 (819)
Q Consensus 679 ~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----g~~p~--~~~~~~l~~~~~ 745 (819)
++++|...+++..+ .| .++ ...+..+...|... |++++|++.|++..+. | .+. ...+..++..+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYA 166 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHH
Confidence 55555555555442 22 112 33455556667777 8999999999998863 2 111 236778888999
Q ss_pred hcCChHHHHHHHHHHHHcCCCC-----CH-HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCH
Q 003449 746 ADSLFVEALDVVRYMIKQGCKP-----NQ-NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 746 ~~g~~~~A~~~~~~~~~~g~~p-----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
+.|++++|++++++........ +. ..+...+-++...||...|.+.+++....+|.-..
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 9999999999999998743221 22 23455666777889999999999999999885433
No 180
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.67 E-value=0.0007 Score=65.38 Aligned_cols=102 Identities=14% Similarity=0.047 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----CHHH
Q 003449 700 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV----ITYNTFVASYAADSLFVEALDVVRYMIKQGCKP----NQNT 771 (819)
Q Consensus 700 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p----~~~~ 771 (819)
..|......+.+.|++++|...|+.+++. .|+. ..+..++.+|...|++++|+..|+++++. .| ....
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dA 219 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHH
Confidence 33444444445678888888888888874 3433 46778888889999999999999998864 23 3567
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 772 YNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 772 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
+..++.++...|+.++|+++++++.+..|+....
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 7778888888999999999999999988887544
No 181
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.65 E-value=0.00092 Score=53.78 Aligned_cols=94 Identities=16% Similarity=0.226 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003449 667 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA 746 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 746 (819)
+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++...... .+...+..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHH
Confidence 3445556666777777777777776642 22345666667777777777777777777766422 233466677777777
Q ss_pred cCChHHHHHHHHHHHH
Q 003449 747 DSLFVEALDVVRYMIK 762 (819)
Q Consensus 747 ~g~~~~A~~~~~~~~~ 762 (819)
.|++++|...++...+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777777665
No 182
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.65 E-value=0.0014 Score=67.23 Aligned_cols=87 Identities=10% Similarity=-0.047 Sum_probs=41.8
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003449 639 YGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEA 718 (819)
Q Consensus 639 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 718 (819)
+...|++++|++.|+++++.. +.+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 344455555555555555432 2333444444555555555555555555555432 11344444445555555555555
Q ss_pred HHHHHHHHH
Q 003449 719 SRIFSEMRD 727 (819)
Q Consensus 719 ~~~~~~~~~ 727 (819)
...|++.++
T Consensus 90 ~~~~~~al~ 98 (356)
T PLN03088 90 KAALEKGAS 98 (356)
T ss_pred HHHHHHHHH
Confidence 555555544
No 183
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.63 E-value=0.0011 Score=52.42 Aligned_cols=76 Identities=18% Similarity=0.379 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhCCCCCCHHHHHH
Q 003449 213 SLITTYASNGRYREAVMVFKKMEEEGC-KPTLITYNVILNVYGKMGMP-------WNKIMALVEGMKSAGVKPDSYTFNT 284 (819)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~-------~~~a~~~~~~~~~~g~~p~~~~~~~ 284 (819)
..|..+...+++.....+|+.+++.|+ .|++.+|+.++...++...+ .-..+.+|+.|...+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 444555555777777777777777777 77777777777777765421 1123334444444444444444444
Q ss_pred HHHH
Q 003449 285 LISC 288 (819)
Q Consensus 285 ll~~ 288 (819)
++..
T Consensus 110 vl~~ 113 (120)
T PF08579_consen 110 VLGS 113 (120)
T ss_pred HHHH
Confidence 4443
No 184
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.63 E-value=0.0036 Score=67.15 Aligned_cols=141 Identities=16% Similarity=0.120 Sum_probs=91.2
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 003449 626 SPDIPTLNAMISIYGR-----RQMVAKTNEILHFMNDSGFTPSL-TTYNTLMYMYSRS--------ENFARAEDVLREIL 691 (819)
Q Consensus 626 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~--------g~~~~A~~~~~~~~ 691 (819)
+.+..+|..++.+... .+..++|..+|++..+. .|+. ..|..+..++... ++...+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4456666666655432 22356777777777765 3443 3444443333221 12344455555444
Q ss_pred HCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003449 692 AKG-IKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQN 770 (819)
Q Consensus 692 ~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 770 (819)
... ...+...|..+...+...|++++|...++++.+ +.|+...|..++..+...|+.++|.+.++++.. +.|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCc
Confidence 321 223456777777777778999999999999988 457788888999999999999999999999987 567544
Q ss_pred HH
Q 003449 771 TY 772 (819)
Q Consensus 771 ~~ 772 (819)
+|
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 44
No 185
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.60 E-value=0.0038 Score=56.78 Aligned_cols=129 Identities=14% Similarity=0.070 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003449 629 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS--LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVI 706 (819)
Q Consensus 629 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 706 (819)
...+..+...+...|++++|...+++..+....+. ...+..++.++.+.|++++|...+++.++.. +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44577788888999999999999999987532222 3578888999999999999999999999853 22567777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003449 707 FAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLN 783 (819)
Q Consensus 707 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 783 (819)
.++...|+...+..-++.... .+++|.++++++.+ ..|+. +..++..+...|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~--~~p~~--~~~~~~~~~~~~ 165 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIR--LAPNN--YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHh--hCchh--HHHHHHHHHhcC
Confidence 888888887776655444332 25677777777776 34432 434444444333
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.60 E-value=0.0029 Score=52.40 Aligned_cols=57 Identities=18% Similarity=0.143 Sum_probs=26.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003449 671 MYMYSRSENFARAEDVLREILAKGIKPD--IISYNTVIFAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 727 (819)
..++-..|+.++|+.+|++.+..|.... ...+..+...|...|++++|..++++...
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344445555555555555554443322 23334444445555555555555555444
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.59 E-value=0.0097 Score=61.78 Aligned_cols=96 Identities=14% Similarity=0.169 Sum_probs=56.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003449 179 LISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGM 258 (819)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 258 (819)
-+..+...|.+++|.++- +..+...-|..|...-..+=.++-|+..|.+....
T Consensus 562 ~m~q~Ieag~f~ea~~ia------clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl--------------------- 614 (1081)
T KOG1538|consen 562 PMYQYIERGLFKEAYQIA------CLGVTDTDWRELAMEALEALDFETARKAYIRVRDL--------------------- 614 (1081)
T ss_pred cchhhhhccchhhhhccc------ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhcc---------------------
Confidence 344455667776664432 22223345556655555555566666666555432
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003449 259 PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEE 304 (819)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 304 (819)
++-+...-+++++++|-.|+... +...|+-.|.+.||.++|.+
T Consensus 615 ~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 615 RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 34455555677888887787654 33446667888888888744
No 188
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.59 E-value=0.0013 Score=67.20 Aligned_cols=121 Identities=16% Similarity=0.143 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 003449 277 PDSYTFNTLISCCRRGSLHEEAAGVFEEMKLA--GFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNS 354 (819)
Q Consensus 277 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 354 (819)
-+......+++.+....+.+++..++-+.... ....-..|..++++.|.+.|..++++.+++.=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34555555666666666666666666666554 1222233455777777777777777777777666777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003449 355 LISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKA 397 (819)
Q Consensus 355 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~ 397 (819)
|+..+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777776665555555655555554443
No 189
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.59 E-value=0.00033 Score=52.97 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=52.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 741 VASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 741 ~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
...|...+++++|+++++++++ +.| +...|...+.++.+.|++++|...++++++.+|++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 3567888899999999999988 455 67788888999999999999999999999998877554
No 190
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.57 E-value=0.0012 Score=65.15 Aligned_cols=128 Identities=6% Similarity=0.087 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 003449 597 LKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGR-RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYS 675 (819)
Q Consensus 597 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 675 (819)
|..++....+.+..+.|+.+|.+..+.+ ......|...+..-.. .++.+.|..+|+...+. ++.+...|...++.+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 3444444444445555555555554321 1122233333333222 33344455555555543 2344444555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003449 676 RSENFARAEDVLREILAKGIKPD---IISYNTVIFAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 676 ~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 727 (819)
+.++.+.|..+|++.+.. +.++ ...|...+..-.+.|+++.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555433 1111 13455555555555555555555555554
No 191
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.55 E-value=0.0001 Score=44.43 Aligned_cols=26 Identities=38% Similarity=0.593 Sum_probs=10.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 003449 317 YNALLDVYGKCRRPKEAMQVLREMKI 342 (819)
Q Consensus 317 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 342 (819)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44444444444444444444444433
No 192
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.54 E-value=0.00011 Score=44.35 Aligned_cols=29 Identities=55% Similarity=0.785 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003449 351 TYNSLISAYARDGLLEEAMELKTQMVEIG 379 (819)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 379 (819)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777665
No 193
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.54 E-value=0.002 Score=58.37 Aligned_cols=95 Identities=14% Similarity=0.015 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 003449 664 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKP--DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VITYNTF 740 (819)
Q Consensus 664 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l 740 (819)
...|..++..+...|++++|+..|++.+.....+ ...+|..+..+|...|++++|.+.+++..+. .|+ ...+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 3456667777777888888888888887643222 2347778888888888888888888888763 332 3345555
Q ss_pred HHHHH-------hcCChHHHHHHHHHH
Q 003449 741 VASYA-------ADSLFVEALDVVRYM 760 (819)
Q Consensus 741 ~~~~~-------~~g~~~~A~~~~~~~ 760 (819)
+..+. ..|++++|+..+++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 55555 777877665555544
No 194
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.53 E-value=0.00085 Score=68.62 Aligned_cols=118 Identities=20% Similarity=0.137 Sum_probs=57.0
Q ss_pred ccHHHHHHhhcCCCChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 003449 134 ADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTS 213 (819)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 213 (819)
.++-..+.........+.+..++..++.. .......+.+.+++++.|...|..+.+..++..=...|+.||.++++.
T Consensus 67 ~dld~fvn~~~~~~~~d~~~~~L~k~R~s---~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 67 LDLDIFVNNVESKDDLDEVEDVLYKFRHS---PNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcC---cccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 33333444443334444555555555441 111122334445555555555555555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003449 214 LITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYG 254 (819)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 254 (819)
|++.+.+.|++..|..+...|...+...+..|+...+.+|.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 55555555555555555555544433334444444444433
No 195
>PRK15331 chaperone protein SicA; Provisional
Probab=97.49 E-value=0.0061 Score=52.64 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=64.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc
Q 003449 705 VIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQ 784 (819)
Q Consensus 705 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 784 (819)
...-+...|++++|..+|.-+...+.. +..-|..|+.++-..+++++|+..|..+...+ .-|+......+.+|...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 334455778888888888777764333 44556677777777788888888877776532 2255556677778888888
Q ss_pred HHHHHHHHHHhhhcCCCC
Q 003449 785 RYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 785 ~~~A~~~~~~~~~~~p~~ 802 (819)
.++|+..|+.+.+ .|..
T Consensus 121 ~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 121 AAKARQCFELVNE-RTED 137 (165)
T ss_pred HHHHHHHHHHHHh-Ccch
Confidence 8888888877777 3443
No 196
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.49 E-value=0.0016 Score=51.48 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=42.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHhCCC--------HHHHHHHHHHHHHCCCCCCHhhHHH
Q 003449 284 TLISCCRRGSLHEEAAGVFEEMKLAGF-SPDKVTYNALLDVYGKCRR--------PKEAMQVLREMKINGCLPSIVTYNS 354 (819)
Q Consensus 284 ~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~~~g~~~~~~~~~~ 354 (819)
..|..|...+++.....+|+.+++.|+ -|+..+|+.++.+.++..- +-+.+.+|+.|...+.+|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 334445555666666666666666666 6666666666666554321 2233445555555555555555555
Q ss_pred HHHHHH
Q 003449 355 LISAYA 360 (819)
Q Consensus 355 li~~~~ 360 (819)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 554443
No 197
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.46 E-value=0.028 Score=54.07 Aligned_cols=185 Identities=10% Similarity=0.062 Sum_probs=101.9
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003449 593 HAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIP--TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTL 670 (819)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 670 (819)
+.......+..+...|++++|...|+.+.......... ..-.++.++.+.+++++|...+++..+..-.-...-+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 33334344555566777777777777777653222111 1234556667777777777777777765211111122222
Q ss_pred HHHHH--hcC---------------C---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003449 671 MYMYS--RSE---------------N---FARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL 730 (819)
Q Consensus 671 ~~~~~--~~g---------------~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 730 (819)
+.+.+ ..+ | ..+|...|+++++. -|+ ..-..+|...+..+... +
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~-l 174 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR-L 174 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH-H
Confidence 22221 110 1 12344444444443 122 12234444433333321 0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhh
Q 003449 731 VPDVITYNTFVASYAADSLFVEALDVVRYMIKQG--CKPNQNTYNSIVDGYCKLNQRYEAITFVNNLS 796 (819)
Q Consensus 731 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 796 (819)
. ..-..++.-|.+.|.+..|+.-++.+++.- -.........++.+|.+.|..++|.++.+.+.
T Consensus 175 a---~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 175 A---KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred H---HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0 011245666889999999999999999741 11145777889999999999999998876653
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.03 Score=51.67 Aligned_cols=132 Identities=12% Similarity=0.128 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHH
Q 003449 669 TLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS-----GLVPDVITYNTFVAS 743 (819)
Q Consensus 669 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~~~~~~~l~~~ 743 (819)
+++.+..-.|.+.-....++++++...+.++.....|+..-.+.|+.+.|...|++..+. |+..+..+..+....
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 334444444444444444444444333334444444444444445544444444443331 111111222222333
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC
Q 003449 744 YAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
|.-++++.+|...+.+..+.+ .-|+...+.-+.++.-.|+..+|++.++.+.+..|.
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred eecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 334444444444444444321 113333333333333444445555555555544444
No 199
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.37 E-value=0.0041 Score=56.03 Aligned_cols=103 Identities=23% Similarity=0.341 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 003449 207 DVYAYTSLITTYA-----SNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYT 281 (819)
Q Consensus 207 ~~~~~~~l~~~~~-----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~ 281 (819)
+-.+|..+++.+. +.|..+=....+..|.+.|+..|..+|+.|++++=+... . -..+|+.+--
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~f--v-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKF--V-PRNFFQAEFM--------- 113 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCc--c-cccHHHHHhc---------
Confidence 3344444444444 234556666667777788888888888888877765321 0 0111111110
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCC
Q 003449 282 FNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRR 329 (819)
Q Consensus 282 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 329 (819)
---.+.+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 114 --------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 --------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred --------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0112345566666666666666666666666666655543
No 200
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.32 E-value=0.064 Score=51.58 Aligned_cols=58 Identities=14% Similarity=0.096 Sum_probs=44.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003449 704 TVIFAYCRNGRMKEASRIFSEMRDS--GLVPDVITYNTFVASYAADSLFVEALDVVRYMI 761 (819)
Q Consensus 704 ~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 761 (819)
.++..|.+.|.+.-|..-++.+++. +..........++.+|...|..++|.++...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4567788889999999999999874 223344577788889999999999988877664
No 201
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.29 E-value=0.0022 Score=62.74 Aligned_cols=131 Identities=14% Similarity=0.060 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC----C-CCCCHH
Q 003449 386 TYTTLLSGFEKAGKDESAMKVFEEMRS----AGCK-PNICTFNALIKMHGNRGNFVEMMKVFDEINKC----N-CKPDIV 455 (819)
Q Consensus 386 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~ 455 (819)
.|..|.+.|.-.|+++.|+...+.-+. .|-. .....+..+..++.-.|+++.|.+.|+..... | ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455666666667778877776654332 2211 12345566667777777777777777654321 1 011223
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003449 456 TWNTLLAVFGQNGMDSEVSGVFKEMKRA-----GFIPERDTFNTLISAYSRCGSFDQAMSIYKRML 516 (819)
Q Consensus 456 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 516 (819)
....|.+.|.-..++++|+..+.+-... ...-....+.+|..+|...|..++|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3444555555555555555554432110 111133455556666666666666655555443
No 202
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.29 E-value=0.0011 Score=48.68 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=37.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 705 VIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 705 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
++..+.+.|++++|.+.|+++++.. | +...+..++.++...|++++|+.+++++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455667777777777777777643 3 444666777777777777777777777766
No 203
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.28 E-value=0.017 Score=47.87 Aligned_cols=106 Identities=14% Similarity=0.095 Sum_probs=70.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHH
Q 003449 704 TVIFAYCRNGRMKEASRIFSEMRDSGLVPD--VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN----QNTYNSIVD 777 (819)
Q Consensus 704 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~ 777 (819)
.+..++-..|+.++|+.+|++..+.|+..+ ...+..++..+...|++++|+.++++..+. .|+ ......++.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHH
Confidence 445667777888888888888888776543 236667777788888888888888887764 232 233334556
Q ss_pred HHHhcCcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 003449 778 GYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIA 815 (819)
Q Consensus 778 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~ 815 (819)
++...|+.++|+..+-.++.-. ...|.+=|..++
T Consensus 84 ~L~~~gr~~eAl~~~l~~la~~----~~~y~ra~~~ya 117 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALAET----LPRYRRAIRFYA 117 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 6777788888888777665421 125666555554
No 204
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.25 E-value=0.0013 Score=48.98 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 003449 698 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADS-LFVEALDVVRYMIK 762 (819)
Q Consensus 698 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 762 (819)
+...|..++..+...|++++|+..|++.++. .| +...|..++.++...| ++++|+..++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3456666677777777777777777777763 33 3446667777777777 57777777777765
No 205
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.24 E-value=0.0045 Score=55.79 Aligned_cols=87 Identities=28% Similarity=0.282 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 003449 292 GSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMEL 371 (819)
Q Consensus 292 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 371 (819)
.|..+-....+..|.+.|+..|..+|+.|++.+=| |.+- -..+|+.+- .-| -.+.+-|+++
T Consensus 65 RGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F---------------~hy--p~Qq~c~i~l 125 (228)
T PF06239_consen 65 RGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF---------------MHY--PRQQECAIDL 125 (228)
T ss_pred cChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------------ccC--cHHHHHHHHH
Confidence 35566666667777777777777777777776543 2211 111111110 000 1233445566
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003449 372 KTQMVEIGITPDVFTYTTLLSGFEKA 397 (819)
Q Consensus 372 ~~~m~~~g~~pd~~~~~~l~~~~~~~ 397 (819)
+++|...|+-||..++..+++.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 66666666666666666666655433
No 206
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.022 Score=54.36 Aligned_cols=100 Identities=10% Similarity=0.025 Sum_probs=75.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC-CHHH
Q 003449 661 TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG---RMKEASRIFSEMRDSGLVP-DVIT 736 (819)
Q Consensus 661 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p-~~~~ 736 (819)
+-|...|..|..+|...|++..|..-|....+.. .++...+..+..++..+. ...++..+|+++++. .| |..+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHH
Confidence 5677888888888888888888888888888752 345677777776665443 266788888888874 34 4456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003449 737 YNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 737 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
...|+..+...|++.+|...++.|++.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 777778888888888888888888875
No 207
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.11 E-value=0.079 Score=53.33 Aligned_cols=163 Identities=12% Similarity=0.104 Sum_probs=73.9
Q ss_pred HHHhcCChHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003449 638 IYGRRQMVAKTNEILHFMNDSG---FTPSLTTYNTLMYMYSR---SENFARAEDVLREILAKGIKPDIISYNTVIFAYCR 711 (819)
Q Consensus 638 ~~~~~~~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 711 (819)
.|....+++.-+++.+.+...- +.-...+-..++.++.+ .|+.++|++++..+....-.++..+|..++..|..
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 3455555555555555554431 11111122233344444 55566666665554433334455555555544431
Q ss_pred ---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh----HHHHHHH----HHHHHcCC-CCCHHHH-
Q 003449 712 ---------NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLF----VEALDVV----RYMIKQGC-KPNQNTY- 772 (819)
Q Consensus 712 ---------~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~----~~A~~~~----~~~~~~g~-~p~~~~~- 772 (819)
....++|...|.+.-+ +.||...=.+++..+...|.- .+..++. ..+.++|. .+....|
T Consensus 230 ~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd 307 (374)
T PF13281_consen 230 LFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWD 307 (374)
T ss_pred HHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHH
Confidence 1125556666665554 234433222333333333321 1222222 11112222 2222222
Q ss_pred -HHHHHHHHhcCcHHHHHHHHHHhhhcCCCC
Q 003449 773 -NSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 773 -~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
..++.++.-.|+.++|...++++.+..|..
T Consensus 308 ~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 308 VATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 355666667777777777777777776555
No 208
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.01 Score=58.72 Aligned_cols=68 Identities=15% Similarity=0.085 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCH
Q 003449 736 TYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
++.+++.++.+.+++.+|+....+.++.+ .+|...+..-+.+|...|+++.|+..|++++++.|.|..
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka 326 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA 326 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH
Confidence 44555555556666666666666655531 225555555555666666666666666666666665533
No 209
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.05 E-value=0.41 Score=47.95 Aligned_cols=107 Identities=16% Similarity=0.128 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003449 351 TYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHG 430 (819)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 430 (819)
+.+.-|.-+...|+...|.++-.+.. -||..-|-..+.+++..++|++-.++-.. .-.+.-|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 33444555556666666665544442 24556666666666666666655544321 112345566666666
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003449 431 NRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVF 477 (819)
Q Consensus 431 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 477 (819)
+.|...+|..++..+. +..-+..|.+.|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHH
Confidence 6666666666665521 134455566666666665543
No 210
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.03 E-value=0.037 Score=53.61 Aligned_cols=168 Identities=10% Similarity=-0.004 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---C--CCHH
Q 003449 630 PTLNAMISIYGRRQMVAKTNEILHFMNDS-GFTP---SLTTYNTLMYMYSRSENFARAEDVLREILAKGI---K--PDII 700 (819)
Q Consensus 630 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~--p~~~ 700 (819)
++|..+..++.+..++.+++.+-+.-... |..+ ......++..++.-.+.++++++.|+.+.+... . ....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 34555555555555555655555443332 2112 123345577788888889999999998774311 1 1246
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCC
Q 003449 701 SYNTVIFAYCRNGRMKEASRIFSEMRDS----GLVPDV------ITYNTFVASYAADSLFVEALDVVRYMIK----QGCK 766 (819)
Q Consensus 701 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~ 766 (819)
++..|...|.+..++++|.-+..+..+. ++. |. .....+..++...|..-+|.+..+++.+ .|-+
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 7788888889999999998887776652 222 22 2345666778888988888888877654 3434
Q ss_pred C-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc
Q 003449 767 P-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 767 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
+ -......+++.|...|+.+.|..-|+.+-..
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 4 3455668899999999999999988886544
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.01 E-value=0.0019 Score=49.50 Aligned_cols=63 Identities=22% Similarity=0.331 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCC---C-HHHHHHHHHHHHhcCcHHHHHHHHHHhhhc
Q 003449 736 TYNTFVASYAADSLFVEALDVVRYMIKQ--GCKP---N-QNTYNSIVDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
++..++.+|...|++++|+++++++++. -..+ + ..++..++.+|...|++++|+++++++.++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667777777777777777777777642 0111 1 356777778888888888888888777653
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.99 E-value=0.016 Score=56.16 Aligned_cols=102 Identities=15% Similarity=0.091 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHH
Q 003449 665 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGL--VPDVITYN 738 (819)
Q Consensus 665 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p~~~~~~ 738 (819)
..|......+.+.|++++|...|+.+++.. |+ ...+..++.+|...|++++|...|+.+.+... ......+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 345555555566788999999999988753 33 35777888888999999999999999887411 11234666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003449 739 TFVASYAADSLFVEALDVVRYMIKQGCKPNQN 770 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 770 (819)
.++.++...|++++|..+++++++. .|+..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 7777888899999999999998874 45433
No 213
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.97 E-value=0.024 Score=53.41 Aligned_cols=106 Identities=16% Similarity=0.138 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCC-CHHHHHHHH
Q 003449 701 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLV--PDVITYNTFVASYAADSLFVEALDVVRYMIKQ-GCKP-NQNTYNSIV 776 (819)
Q Consensus 701 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p-~~~~~~~l~ 776 (819)
.|+.-+ .+.+.|++.+|...|...++.... -....+..|+.+++..|++++|..+|..+.+. +-.| -+..+..|+
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455444 356778899999999998885221 12246777899999999999999999998863 2223 358888999
Q ss_pred HHHHhcCcHHHHHHHHHHhhhcCCCCCHHHH
Q 003449 777 DGYCKLNQRYEAITFVNNLSKLDPHVTKELE 807 (819)
Q Consensus 777 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 807 (819)
.+..+.|+.++|..+++++.+.-|..+....
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 9999999999999999999999998876643
No 214
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.84 Score=49.95 Aligned_cols=147 Identities=14% Similarity=0.176 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003449 175 VIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYG 254 (819)
Q Consensus 175 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 254 (819)
......+-|-+.|++++|...|-+-+.. ..| ..+|.-|....+..+-..+++.+.+.|.. +...-..|+++|.
T Consensus 370 i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYi 442 (933)
T KOG2114|consen 370 IHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYI 442 (933)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHH
Confidence 4444555666778888887777655432 121 13455556666666777777777777765 5555677888888
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHH
Q 003449 255 KMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAM 334 (819)
Q Consensus 255 ~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 334 (819)
+.+ +.++..++...-. .|.. ..-+...+..|.+.+-.++|..+-..... .......+ +-..|++++|+
T Consensus 443 Klk-d~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl 510 (933)
T KOG2114|consen 443 KLK-DVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEAL 510 (933)
T ss_pred Hhc-chHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHH
Confidence 887 6666666555433 2211 11244566667777777777666544432 23333333 33567888888
Q ss_pred HHHHHH
Q 003449 335 QVLREM 340 (819)
Q Consensus 335 ~~~~~~ 340 (819)
+.+..+
T Consensus 511 ~yi~sl 516 (933)
T KOG2114|consen 511 RYISSL 516 (933)
T ss_pred HHHhcC
Confidence 887765
No 215
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.021 Score=56.73 Aligned_cols=101 Identities=13% Similarity=0.041 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003449 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 777 (819)
..++..+.-+|.+.+++.+|+....+.++.+ .+|...+..-+.+|...|+++.|+..|+++++ +.| |..+-..|+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence 4567778889999999999999999999864 34667888889999999999999999999999 688 5455555555
Q ss_pred HHHhcCcHH-HHHHHHHHhhhcCCCC
Q 003449 778 GYCKLNQRY-EAITFVNNLSKLDPHV 802 (819)
Q Consensus 778 ~~~~~g~~~-~A~~~~~~~~~~~p~~ 802 (819)
+-.+..++. ...++|.+|...-...
T Consensus 334 l~~k~~~~~~kekk~y~~mF~k~~~~ 359 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFAKLAEE 359 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccc
Confidence 544444443 4478888888765533
No 216
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.93 E-value=0.43 Score=46.16 Aligned_cols=203 Identities=14% Similarity=0.051 Sum_probs=120.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH-
Q 003449 595 VLLKTLILVYSKSDLLMDTERAFLELKKK-GFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMY- 672 (819)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~- 672 (819)
.........+...+.+..+...+...... ........+..+...+...+.+..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444455555555566555555555431 112234445555555566666777777777666543222 112222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 003449 673 MYSRSENFARAEDVLREILAKGI--KPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSL 749 (819)
Q Consensus 673 ~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 749 (819)
.+...|+++.|...+++...... ......+......+...++.++|...+.+..... .. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56777777777777777755211 0123333344444566777888888888777631 21 24566777777777778
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC
Q 003449 750 FVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 750 ~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
+++|...+..+.+. .|+ ...+..+...+...|..+++...+++..+..|.
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888888888763 343 455555666666666788888888888877775
No 217
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.92 E-value=0.0042 Score=46.01 Aligned_cols=63 Identities=24% Similarity=0.314 Sum_probs=44.7
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003449 184 GKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVI 249 (819)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 249 (819)
...|++++|..+|+.+.+..+. +..++..+..+|.+.|++++|..+++++... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 3567788888888887776444 7777778888888888888888888888776 4454444444
No 218
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.91 E-value=0.013 Score=49.39 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=35.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003449 706 IFAYCRNGRMKEASRIFSEMRDSGLV--PDVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 706 ~~~~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
+....+.|++++|.+.|+.+...-.. -...+-..++.+|.+.|++++|+..+++.++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 44455667777777777777664111 12235556667777777777777777777763
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.91 E-value=0.11 Score=48.55 Aligned_cols=56 Identities=18% Similarity=-0.025 Sum_probs=31.1
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCC--CCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 003449 288 CCRRGSLHEEAAGVFEEMKLAGFS--PDKVTYNALLDVYGKCRRPKEAMQVLREMKIN 343 (819)
Q Consensus 288 ~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 343 (819)
.+...|++++|.+.|+.+...... --....-.++.++.+.|++++|...+++..+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 355566777777777776654211 11223445556666777777777777776554
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.84 E-value=0.23 Score=46.51 Aligned_cols=74 Identities=16% Similarity=0.115 Sum_probs=45.5
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003449 180 ISMLGKEGKVSVAASLLHGLHKDGF--DIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVY 253 (819)
Q Consensus 180 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 253 (819)
...+...|++.+|...|+.+....+ +....+.-.++.++.+.|+++.|...|++..+.-+......+-..+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 3344577888888888888776422 2234566677788888888888888888888764433333333333333
No 221
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.75 E-value=0.98 Score=47.69 Aligned_cols=185 Identities=10% Similarity=0.044 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003449 523 DLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLIL 602 (819)
Q Consensus 523 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 602 (819)
+..+|...+......|+.+.+.-+|+...-. +..-...|-..+.-....|+.+-|..++....+-..+....+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3455666666666666666666666655421 011112222222222233555554444444333222222222222222
Q ss_pred HHhcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHH---HHHHHHhhCCCCCCHHHHHHHHHH-----
Q 003449 603 VYSKSDLLMDTERAFLELKKKGFSPDI-PTLNAMISIYGRRQMVAKTN---EILHFMNDSGFTPSLTTYNTLMYM----- 673 (819)
Q Consensus 603 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~---~~~~~~~~~~~~p~~~~~~~l~~~----- 673 (819)
.....|++.+|..+++.+...- |+. ..-..-+....+.|..+.+. +++...... .-+..+...+.--
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHH
Confidence 2334456666666666655432 222 11122223334455555554 222222221 1111111111111
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003449 674 YSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG 713 (819)
Q Consensus 674 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 713 (819)
+.-.++.+.|..++.++.+. ..++...|..+++.+...+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 22245666666666666654 3445555555555544443
No 222
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=1.2 Score=48.27 Aligned_cols=334 Identities=15% Similarity=0.095 Sum_probs=171.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003449 425 LIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGM--DSEVSGVFKEMKRAGFIPERDTFNTLISAYSRC 502 (819)
Q Consensus 425 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 502 (819)
+++.+...+.+..|+++-+-+...-..- ...|......+.+..+ -+++.+..++=..... -....|..+++.....
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQE 520 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhc
Confidence 4555566667777777665554221111 3445555555555422 2223333222222212 2445677777777778
Q ss_pred CChHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 003449 503 GSFDQAMSIYKRMLEAGVT----PDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQM 578 (819)
Q Consensus 503 g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 578 (819)
|+.+.|..+++.=...+.. .+..-+..-+.-..+.|+.+-...++-.+.+. .+...+ +....+...|
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l------~~~l~~~p~a 591 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSL------FMTLRNQPLA 591 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHH------HHHHHhchhh
Confidence 8888888777642221110 01111222223333344444444444444321 011111 1112233445
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHH-HHHHHC-CCCCCHHHHHHHHHHHHhcCCh---HHHH----
Q 003449 579 LALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAF-LELKKK-GFSPDIPTLNAMISIYGRRQMV---AKTN---- 649 (819)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~-~~~~~~~~~~~l~~~~~~~~~~---~~A~---- 649 (819)
..+|.+..++. + ...+-+.|....+.+++-.+. +..... .+.+-........+.+.+.... ++|.
T Consensus 592 ~~lY~~~~r~~---~---~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~ 665 (829)
T KOG2280|consen 592 LSLYRQFMRHQ---D---RATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQM 665 (829)
T ss_pred hHHHHHHHHhh---c---hhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 55555554421 1 112223333333333322221 111110 0111222233344444433321 1221
Q ss_pred ---HHHHHHhh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003449 650 ---EILHFMND-SGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEM 725 (819)
Q Consensus 650 ---~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 725 (819)
.+.+.+.. .|.....-+.+--+.-+...|+..+|.++-.+.. -||...|..-+.+++..+++++-.++-+..
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk 741 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK 741 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc
Confidence 12222211 1222333345555666778899999998877664 468889999999999999999988877764
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003449 726 RDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNN 794 (819)
Q Consensus 726 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 794 (819)
. .+..|.-++.+|.+.|+.+||.+++-+.-. .. -...+|.+.|++.+|.+..-+
T Consensus 742 k------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 742 K------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred C------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHH
Confidence 3 256778889999999999999998877632 11 466778888999888876543
No 223
>PRK11906 transcriptional regulator; Provisional
Probab=96.72 E-value=0.067 Score=54.68 Aligned_cols=150 Identities=12% Similarity=0.056 Sum_probs=111.0
Q ss_pred ChHHHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003449 644 MVAKTNEILHFMNDS-GFTPS-LTTYNTLMYMYSR---------SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN 712 (819)
Q Consensus 644 ~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 712 (819)
..+.|..+|.+.... .+.|+ ...|..+..++.. ..+..+|.+..++..+.+ .-|......+..++...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 467888899998822 23444 4456666655432 234567888888888875 34788888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCcHHHH
Q 003449 713 GRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN---QNTYNSIVDGYCKLNQRYEA 788 (819)
Q Consensus 713 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~~A 788 (819)
|+++.|..+|++... +.||. .+|...++.+.-.|+.++|.+.++++.+ +.|. ..+....++.|+.. ..++|
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCC-chhhh
Confidence 999999999999988 56655 4788888889999999999999999887 5663 45555666677766 56889
Q ss_pred HHHHHHhhhcC
Q 003449 789 ITFVNNLSKLD 799 (819)
Q Consensus 789 ~~~~~~~~~~~ 799 (819)
++++-+-.+..
T Consensus 427 ~~~~~~~~~~~ 437 (458)
T PRK11906 427 IKLYYKETESE 437 (458)
T ss_pred HHHHhhccccc
Confidence 99887765543
No 224
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.53 Score=43.88 Aligned_cols=132 Identities=14% Similarity=0.066 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-----HHH
Q 003449 631 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISY-----NTV 705 (819)
Q Consensus 631 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-----~~l 705 (819)
..+.++..+.-.|.+.-...++.+..+..-+.++.....++..-.+.||.+.|..+|++..+..-+.|.... ...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 345666666777888888888888887665667778888888889999999999999977643223333333 333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003449 706 IFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 706 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
...|.-++++.+|...+.++....-. |+...++-+-++.-.|+..+|++.++.|++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566677888899889888875322 5556666666677788999999999999884
No 225
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.49 Score=43.32 Aligned_cols=88 Identities=14% Similarity=0.099 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH------HHHHHHHh
Q 003449 678 ENFARAEDVLREILAK--GIKPD---IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYN------TFVASYAA 746 (819)
Q Consensus 678 g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~------~l~~~~~~ 746 (819)
.++++|+..|++.-+- |-..+ ...+.-+...-...+++.+|+++|+++....+..+..-|. ..+-++..
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 5666677776666532 11111 1223333344456678888888888887754443322221 12222233
Q ss_pred cCChHHHHHHHHHHHHcCCCC
Q 003449 747 DSLFVEALDVVRYMIKQGCKP 767 (819)
Q Consensus 747 ~g~~~~A~~~~~~~~~~g~~p 767 (819)
..+.-.+...+++-.+ ..|
T Consensus 208 ~~D~v~a~~ALeky~~--~dP 226 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQE--LDP 226 (288)
T ss_pred cccHHHHHHHHHHHHh--cCC
Confidence 3455555566666665 345
No 226
>PRK15331 chaperone protein SicA; Provisional
Probab=96.64 E-value=0.055 Score=46.93 Aligned_cols=90 Identities=8% Similarity=-0.071 Sum_probs=59.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003449 671 MYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLF 750 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 750 (819)
..-+...|++++|..+|+-+.-.+. -+..-|..|..++...+++++|+..|......+. -|+..+...+.++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 3334567777777777777665432 2555666677777777777777777777665432 2445556667777777777
Q ss_pred HHHHHHHHHHHH
Q 003449 751 VEALDVVRYMIK 762 (819)
Q Consensus 751 ~~A~~~~~~~~~ 762 (819)
+.|...++..++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 777777777776
No 227
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.64 E-value=0.013 Score=44.15 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=35.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 707 FAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 707 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
..|.+.+++++|.++++++++.+.. +...+...+.++...|++++|...++++++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4566667777777777777664221 444566666667777777777777777766
No 228
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.61 E-value=0.86 Score=45.17 Aligned_cols=80 Identities=20% Similarity=0.218 Sum_probs=44.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003449 467 NGMDSEVSGVFKEMKRAGFIPERDT----FNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQ 542 (819)
Q Consensus 467 ~g~~~~a~~~~~~m~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 542 (819)
.|+++.|.+-|+.|.+. ..| +..|.-...+.|+.+.|.++-++..+.-.. -...+...+...+..|+|+.
T Consensus 133 eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 133 EGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDG 206 (531)
T ss_pred cCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHH
Confidence 45555555555555431 222 222333334566777777766666554222 23556666777777777777
Q ss_pred HHHHHHHHHh
Q 003449 543 SEKIFAEMKG 552 (819)
Q Consensus 543 A~~~~~~m~~ 552 (819)
|+++++.-+.
T Consensus 207 AlkLvd~~~~ 216 (531)
T COG3898 207 ALKLVDAQRA 216 (531)
T ss_pred HHHHHHHHHH
Confidence 7777766543
No 229
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.60 E-value=0.28 Score=47.85 Aligned_cols=128 Identities=9% Similarity=0.056 Sum_probs=64.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCCCHHHH--
Q 003449 599 TLILVYSKSDLLMDTERAFLELKKKGF-----SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS----GFTPSLTTY-- 667 (819)
Q Consensus 599 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~~~~~-- 667 (819)
.+..++...+.++++.+.|+...+... ......+..|...|.+..++++|.-+..+..+. ++..-...|
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 345555555566666666665543111 112345566666666666666666554444321 211111112
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003449 668 ---NTLMYMYSRSENFARAEDVLREILA----KGIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMR 726 (819)
Q Consensus 668 ---~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 726 (819)
..+.-++...|.+..|.+.-++..+ .|-.+ -......+.+.|...|+.+.|..-|+...
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2233445566666666666665543 22111 12334455667777777777766666544
No 230
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.59 E-value=0.66 Score=46.94 Aligned_cols=173 Identities=17% Similarity=0.151 Sum_probs=83.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003449 563 SSLLHAYANGREIDQMLALSEEIYSGI---IEPHAVLLKTLILVYSK---SDLLMDTERAFLELKKKGFSPDIPTLNAMI 636 (819)
Q Consensus 563 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 636 (819)
..++-+|....+++..+++.+.+.... +.....+-...+.++.+ .|+.++|.+++..+....-.++..++..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344445777777777777777665431 11122222333334444 455555555555533333334444444443
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-
Q 003449 637 SIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM- 715 (819)
Q Consensus 637 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~- 715 (819)
..|-. +......-+ ....++|++.|.+.-+. .|+...-..++..+...|..
T Consensus 225 RIyKD-------------~~~~s~~~d-------------~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~ 276 (374)
T PF13281_consen 225 RIYKD-------------LFLESNFTD-------------RESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDF 276 (374)
T ss_pred HHHHH-------------HHHHcCccc-------------hHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcc
Confidence 33311 000000001 11266677777766553 34433322333333333331
Q ss_pred ---HHHHHHH----HHHHHCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003449 716 ---KEASRIF----SEMRDSGLV---PDVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 716 ---~~A~~~~----~~~~~~g~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
.+..++- ..+.+.|.. .|.-.+..++.+..-.|++++|...+++|.+.
T Consensus 277 ~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 277 ETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1222222 112223322 23345567888888999999999999999874
No 231
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.58 E-value=0.1 Score=44.17 Aligned_cols=122 Identities=10% Similarity=0.048 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003449 666 TYNTLMYMYSRSENFARAEDVLREILAKGIK--PDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 743 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 743 (819)
.+-.-.....+.|++++|.+.|+.+...-.. -....-..++.+|.+.|++++|...+++.++........-|..+..+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 3334455567889999999999999865211 12456667889999999999999999999985332222334444444
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 744 YAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
++.-...+ ..+..+. +..-| .+...+|...|+++++.-|+....
T Consensus 92 L~~~~~~~---~~~~~~~--~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 92 LSYYEQDE---GSLQSFF--RSDRD-------------PTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHhh---hHHhhhc--ccccC-------------cHHHHHHHHHHHHHHHHCcCChhH
Confidence 43332221 2222222 12222 223457778888888887776443
No 232
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.58 E-value=0.011 Score=45.33 Aligned_cols=63 Identities=27% Similarity=0.320 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 700 ISYNTVIFAYCRNGRMKEASRIFSEMRDS----GLV-PD-VITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 700 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.+|+.+...|...|++++|++.|++..+. |-. |+ ..++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666777777777777777777776642 111 11 23667777777788888888887777764
No 233
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=1.5 Score=47.39 Aligned_cols=108 Identities=13% Similarity=0.203 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003449 457 WNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR 536 (819)
Q Consensus 457 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 536 (819)
.+--+.-+...|+..+|.++-.+.. .||...|..-+.+++..+++++-+++-+... .+.-|..+..+|.+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh
Confidence 3344444455555555555444332 2455555555555666565555444433221 23345555556666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003449 537 GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSE 583 (819)
Q Consensus 537 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 583 (819)
.|+.++|.+++.+.... . ....+|...|++.+|.++.-
T Consensus 757 ~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHH
Confidence 66666666665554431 0 23445555555555555443
No 234
>PRK11906 transcriptional regulator; Provisional
Probab=96.55 E-value=0.33 Score=49.86 Aligned_cols=148 Identities=11% Similarity=0.082 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHh---------cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 003449 609 LLMDTERAFLELKK-KGFSPD-IPTLNAMISIYGR---------RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRS 677 (819)
Q Consensus 609 ~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 677 (819)
..+.|..+|.+... ..+.|+ ...|..+...+.. .....+|.+..+...+.+ +-|......+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 46778888888882 222444 4455555544421 234567778888888876 67888888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHH
Q 003449 678 ENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI---TYNTFVASYAADSLFVEA 753 (819)
Q Consensus 678 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---~~~~l~~~~~~~g~~~~A 753 (819)
++++.|...|++.... .|| ...|......+.-.|+.++|.+.+++..+ +.|-.. .....+..|+..+ .++|
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNN 426 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhh
Confidence 8899999999999985 455 66777777778889999999999999777 455433 2233333565554 6888
Q ss_pred HHHHHHHHH
Q 003449 754 LDVVRYMIK 762 (819)
Q Consensus 754 ~~~~~~~~~ 762 (819)
+++|-+-.+
T Consensus 427 ~~~~~~~~~ 435 (458)
T PRK11906 427 IKLYYKETE 435 (458)
T ss_pred HHHHhhccc
Confidence 887765443
No 235
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.53 E-value=0.012 Score=59.84 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003449 698 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI----TYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYN 773 (819)
Q Consensus 698 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 773 (819)
+...++.+..+|.+.|++++|+..|++.++ +.|+.. +|.+++.+|...|++++|+..++++++.+ .+ .|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHH
Confidence 478899999999999999999999999988 566643 58899999999999999999999999842 22 221
Q ss_pred HHHH--HHHhcCcHHHHHHHHHHhhhcCCC--CCHHHHHHHHHH
Q 003449 774 SIVD--GYCKLNQRYEAITFVNNLSKLDPH--VTKELECKLSDR 813 (819)
Q Consensus 774 ~l~~--~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~~l~~~ 813 (819)
.+.. .+....+..+..++++.+.+-+-. .+.....+|++.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~~~g~~~~~~~kL~~E 191 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGEDIGSSFRRDLKLISE 191 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCCccCCchhhHHHHHHH
Confidence 1111 011122334666666666665532 233344555543
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.53 E-value=0.15 Score=54.57 Aligned_cols=166 Identities=17% Similarity=0.125 Sum_probs=103.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH------HHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003449 632 LNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLT------TYNTLMYMYS----RSENFARAEDVLREILAKGIKPDIIS 701 (819)
Q Consensus 632 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~ 701 (819)
+..++...+=.|+-+.+++.+....+.+---.+. .|..++..++ ...+.+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3444555555677777777776665532111111 1222222222 245778888899888875 456554
Q ss_pred HHH-HHHHHHhcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHH
Q 003449 702 YNT-VIFAYCRNGRMKEASRIFSEMRDSG--L-VPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYN-SIV 776 (819)
Q Consensus 702 ~~~-l~~~~~~~g~~~~A~~~~~~~~~~g--~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~l~ 776 (819)
|.. -.+.+...|+.++|++.|++..... . ......+.-+++++...++|++|.+.+.++.+.. .-+..+|. ..+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 443 3467778889999999998766421 1 1123467778888899999999999999998742 22344443 344
Q ss_pred HHHHhcCcH-------HHHHHHHHHhhhcCC
Q 003449 777 DGYCKLNQR-------YEAITFVNNLSKLDP 800 (819)
Q Consensus 777 ~~~~~~g~~-------~~A~~~~~~~~~~~p 800 (819)
-++...|+. ++|.++++++.....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 445577877 888888888765543
No 237
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.47 E-value=0.28 Score=50.34 Aligned_cols=103 Identities=11% Similarity=0.186 Sum_probs=58.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH
Q 003449 703 NTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQN-TYNSIVDGYC 780 (819)
Q Consensus 703 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~ 780 (819)
..+..++.+.|+.+||++.+++|.+....- ...+...|+.++...+.+.++..++.+--+.....+.. .|...+....
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 445566667777777777777776532111 12255567777777777777777776654322112222 2332222222
Q ss_pred hcCc---------------HHHHHHHHHHhhhcCCCCCHH
Q 003449 781 KLNQ---------------RYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 781 ~~g~---------------~~~A~~~~~~~~~~~p~~~~~ 805 (819)
..|+ -..|.+.++++.+.+|+.+.-
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 2222 134678899999999988654
No 238
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.45 E-value=1.2 Score=44.79 Aligned_cols=111 Identities=14% Similarity=0.151 Sum_probs=78.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003449 421 TFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYS 500 (819)
Q Consensus 421 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 500 (819)
+.+..+.-+...|+...|.++..+.. .||..-|...+.+++..+++++-..+... .-.+..|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555666677788888888877764 57888888888888888888877665432 113466778888888
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003449 501 RCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMK 551 (819)
Q Consensus 501 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 551 (819)
+.|...+|..+...+. +..-+..|.+.|++.+|.+.-.+..
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 8888888887776621 2445667788888888877654443
No 239
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.44 E-value=0.0063 Score=40.11 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHH
Q 003449 770 NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 770 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
.+|..++..|...|++++|++.++++++.+|++....
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~ 38 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAW 38 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 3566777777777777777777777777777775443
No 240
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.36 E-value=1.8 Score=45.91 Aligned_cols=186 Identities=11% Similarity=-0.001 Sum_probs=116.6
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003449 557 PNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMI 636 (819)
Q Consensus 557 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 636 (819)
++..+|...+.--...|+.+...-+++.++-. ...-...+-..+......|+..-|..++....+-..+....+-..-.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 45567888888888899999999999887642 13334555556666666699988888888776654332333222223
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCHHHHHHHH-----H
Q 003449 637 SIYGRRQMVAKTNEILHFMNDSGFTPSLTT-YNTLMYMYSRSENFARAE---DVLREILAKGIKPDIISYNTVI-----F 707 (819)
Q Consensus 637 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~~~l~-----~ 707 (819)
......|++..|..+++.+.+.- |+... -..-+....+.|+.+.+. +++.....- .-+......+. .
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARL 449 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHH
Confidence 33456789999999999998863 55432 223345566778888877 333333321 11222222222 1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003449 708 AYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADS 748 (819)
Q Consensus 708 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 748 (819)
.+.-.++.+.|..++.++.+. ..++...|..++......+
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 233457889999999999884 3445556777777665554
No 241
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=1 Score=49.38 Aligned_cols=179 Identities=12% Similarity=0.044 Sum_probs=105.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 003449 281 TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKV--TYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISA 358 (819)
Q Consensus 281 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 358 (819)
....-+..+++...++-|..+.+. .+..++.. ......+-+.+.|++++|...|-+-... ..| ..+|.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 344567777888888888777643 32222221 2222334455788899988887665433 222 335666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 003449 359 YARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEM 438 (819)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 438 (819)
|.....+.+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.+..+..- .|.- ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 77777788888888888888876 44445667888888888887776665543 2211 11133445555566666666
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003449 439 MKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 480 (819)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 480 (819)
.-+-.+... .... +--.+-..|++++|++.+..+
T Consensus 483 ~~LA~k~~~-----he~v---l~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWV---LDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHH---HHHHHHHhcCHHHHHHHHhcC
Confidence 655544332 1112 222233456667776666554
No 242
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.20 E-value=0.095 Score=53.53 Aligned_cols=66 Identities=11% Similarity=0.017 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003449 661 TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDI----ISYNTVIFAYCRNGRMKEASRIFSEMRDS 728 (819)
Q Consensus 661 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 728 (819)
+.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778999999999999999999999999985 4553 46999999999999999999999999984
No 243
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.19 E-value=0.011 Score=36.20 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCC
Q 003449 770 NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 770 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
..|..++..+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467788888889999999999999998888864
No 244
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.17 E-value=0.097 Score=46.03 Aligned_cols=114 Identities=18% Similarity=0.278 Sum_probs=72.0
Q ss_pred HHhcCCHHHHHHHHHHHHHC--C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003449 674 YSRSENFARAEDVLREILAK--G-IKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLF 750 (819)
Q Consensus 674 ~~~~g~~~~A~~~~~~~~~~--~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 750 (819)
....++.+.+...++++... | +-++... ..-.......++++. ..+...++..+...|++
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~-------~~~~~~l~~~~~~~~~~ 78 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY-------LDALERLAEALLEAGDY 78 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH-------HHHHHHHHHHHHHTT-H
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccCH
Confidence 34566777777777777743 1 1112111 111222233333332 12566777888899999
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhh-----hcCCCCCHHH
Q 003449 751 VEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLS-----KLDPHVTKEL 806 (819)
Q Consensus 751 ~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~p~~~~~~ 806 (819)
++|+.++++++. ..| |...|..++.+|...|+..+|.+.|+++. ++|..+++.+
T Consensus 79 ~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 79 EEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 999999999998 467 88899999999999999999999999863 4566666554
No 245
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.58 Score=43.18 Aligned_cols=55 Identities=22% Similarity=0.230 Sum_probs=27.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003449 352 YNSLISAYARDGLLEEAMELKTQMVEIG---ITPDVFTYTTLLSGFEKAGKDESAMKVF 407 (819)
Q Consensus 352 ~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~pd~~~~~~l~~~~~~~g~~~~A~~~~ 407 (819)
|-..|-.|.-..++..|.+.+++--+.+ -.-|..+...|+.+| ..|+.+++..++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 3344444555566666666666533321 112344555555554 345555554443
No 246
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.97 E-value=2.4 Score=43.93 Aligned_cols=137 Identities=15% Similarity=0.043 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------
Q 003449 663 SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKP---DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP------- 732 (819)
Q Consensus 663 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p------- 732 (819)
...++..++..+.+.|+++.|...+.++...+... .+.....-+..+...|+..+|...+++..+..+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34567777777888888888888888777643111 23344444566667788888888777776621111
Q ss_pred -------------------CH-------HHHHHHHHHHHhc------CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 003449 733 -------------------DV-------ITYNTFVASYAAD------SLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGY 779 (819)
Q Consensus 733 -------------------~~-------~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~ 779 (819)
+. .++..++...... +..+++...|+.+.+ +.| ....|..++..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK--LDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH--hChhHHHHHHHHHHHH
Confidence 01 1233333333344 667888888888887 455 455666666665
Q ss_pred HhcCc-----------------HHHHHHHHHHhhhcCCC
Q 003449 780 CKLNQ-----------------RYEAITFVNNLSKLDPH 801 (819)
Q Consensus 780 ~~~g~-----------------~~~A~~~~~~~~~~~p~ 801 (819)
.+.-+ ...|+..|-+++..++.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 303 DKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 43211 13366666666666666
No 247
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.94 E-value=4.4 Score=46.63 Aligned_cols=108 Identities=17% Similarity=0.205 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHH
Q 003449 492 FNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELT--YSSLLHAY 569 (819)
Q Consensus 492 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~l~~~~ 569 (819)
|....+.+...+.+++|.-+|+..-+. ..-+.+|..+|+|.+|..+..++... -+... -..|+.-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence 344444445555666665555543221 22344566667777777766665431 12111 13445555
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003449 570 ANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLE 619 (819)
Q Consensus 570 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 619 (819)
...++.-+|-++..+.... ....+..+++...+++|.++...
T Consensus 1010 ~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 5566666666555554432 12233445555556666555443
No 248
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.90 E-value=0.014 Score=35.87 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC
Q 003449 770 NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 770 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
.+|..++.+|...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888888888888888888888888876
No 249
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.88 E-value=0.15 Score=41.59 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=26.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003449 674 YSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 674 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 727 (819)
....|+++.|++.|.+.+.. .+-+...||.-..++.-+|+.++|++-+++.++
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 44455555555555555443 122344555555555555555555555555444
No 250
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.87 E-value=0.58 Score=41.71 Aligned_cols=94 Identities=10% Similarity=-0.032 Sum_probs=65.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003449 706 IFAYCRNGRMKEASRIFSEMRDSGLVPDV----ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCK 781 (819)
Q Consensus 706 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 781 (819)
...+...|++++|...++..... .-|. .+-..++......|.+|+|++.+....+.++ .......-++.+..
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 46677788888888888876642 1122 2333566777888888888888887765432 23344566888888
Q ss_pred cCcHHHHHHHHHHhhhcCCCCC
Q 003449 782 LNQRYEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 782 ~g~~~~A~~~~~~~~~~~p~~~ 803 (819)
.|+.++|+..|+++++.++++.
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 172 KGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred cCchHHHHHHHHHHHHccCChH
Confidence 8888888888888888875543
No 251
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.85 E-value=2.4 Score=42.95 Aligned_cols=129 Identities=16% Similarity=0.119 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 003449 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAG-VTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTY-SSLLH 567 (819)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~l~~ 567 (819)
..|...++...+..-++.|..+|-++.+.+ +.+++..+++++..++ .|+..-|.++|+--... .||...| ...+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 345555665556566666666666666665 4455666666666554 45556666666654332 2333322 23334
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003449 568 AYANGREIDQMLALSEEIYSGIIEPH--AVLLKTLILVYSKSDLLMDTERAFLELKK 622 (819)
Q Consensus 568 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 622 (819)
-+...++-+.|..+|+..+..- ..+ ..+|..++..-..-|++..+..+-+.+..
T Consensus 475 fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 4445566666666666443321 111 33444444444455555554444444443
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=1.1 Score=42.90 Aligned_cols=121 Identities=9% Similarity=0.026 Sum_probs=66.2
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003449 639 YGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEA 718 (819)
Q Consensus 639 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 718 (819)
....|++.+|..+|+...... +-+....-.++.+|...|+.+.|..++..+....-.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 445666677777666666542 2334455566677777777777777776654321111111222223344444444444
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003449 719 SRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 719 ~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
..+-.+.-+ .| |...-..++..+...|+.++|.+.+-.+++.
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444332 34 4455556666777777777777776666654
No 253
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=1.4 Score=40.71 Aligned_cols=93 Identities=14% Similarity=0.141 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCC-CHHHH
Q 003449 701 SYNTVIFAYCRNGRMKEASRIFSEMRDS----GLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQG--CKP-NQNTY 772 (819)
Q Consensus 701 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p-~~~~~ 772 (819)
.+....+.+.+..++++|-..+.+-... .-.++. ..|...+-.+.-..++..|.+.++.--+-+ ..+ +..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 3444455667777777776666554321 111222 234445555666778888888888755422 122 45667
Q ss_pred HHHHHHHHhcCcHHHHHHHHHH
Q 003449 773 NSIVDGYCKLNQRYEAITFVNN 794 (819)
Q Consensus 773 ~~l~~~~~~~g~~~~A~~~~~~ 794 (819)
..|+.+| ..|+.+++.+++.-
T Consensus 232 enLL~ay-d~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVLSS 252 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHHcC
Confidence 7777666 67888888776653
No 254
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.74 E-value=4.2 Score=44.86 Aligned_cols=181 Identities=12% Similarity=0.014 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003449 609 LLMDTERAFLELKKKGFSPDIPTLNAMISIYG----RRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAE 684 (819)
Q Consensus 609 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 684 (819)
+...|.++|....+.| ...++-.+..+|. -..+...|...+.+..+.| .|...-....+..+.. +..+.+.
T Consensus 343 d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~ 417 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAG---HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTAL 417 (552)
T ss_pred cHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHH
Confidence 4566666666666665 2333333333332 2345677777777777766 3332222223333333 5666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-HHH---Hh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChHH
Q 003449 685 DVLREILAKGIKPDIISYNTVI-FAY---CR----NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD----SLFVE 752 (819)
Q Consensus 685 ~~~~~~~~~~~~p~~~~~~~l~-~~~---~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~----g~~~~ 752 (819)
-.+..+.+.|.+ ...+-..++ ... .. ..+.+.+...+.+....| +......+...|... .+++.
T Consensus 418 ~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~ 493 (552)
T KOG1550|consen 418 ALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEK 493 (552)
T ss_pred HHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHH
Confidence 655555554432 111111111 110 11 124566666777666544 455666666665544 34788
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCcHHHHHHHHHHhhhcCCCCC
Q 003449 753 ALDVVRYMIKQGCKPNQNTYNSIVDGYC----KLNQRYEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 753 A~~~~~~~~~~g~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~p~~~ 803 (819)
|...+..+.+.+ ......++..+- ... +..|.++++++.+.+....
T Consensus 494 a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~~~~~~ 543 (552)
T KOG1550|consen 494 AAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEEDSRAY 543 (552)
T ss_pred HHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhcCchhh
Confidence 888888888754 555556665553 223 7889999988888766553
No 255
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.64 E-value=0.13 Score=45.65 Aligned_cols=92 Identities=21% Similarity=0.301 Sum_probs=64.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 003449 708 AYCRNGRMKEASRIFSEMRDSGLVPD------VITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYC 780 (819)
Q Consensus 708 ~~~~~g~~~~A~~~~~~~~~~g~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~ 780 (819)
-+.+.|++++|..-|.++++. .|. .+.|..-+.++.+.+.++.|++-..++++. .| ....+..-+.+|-
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYE 179 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHH
Confidence 355677788888877777763 222 135666667777888888888888888773 45 3444445566777
Q ss_pred hcCcHHHHHHHHHHhhhcCCCCC
Q 003449 781 KLNQRYEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 781 ~~g~~~~A~~~~~~~~~~~p~~~ 803 (819)
+..++++|+.-|+++++.+|...
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchH
Confidence 77888888888888888888765
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.3 Score=47.08 Aligned_cols=154 Identities=11% Similarity=0.041 Sum_probs=93.5
Q ss_pred hcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCH
Q 003449 605 SKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSL----TTYNTLMYMYSRSENF 680 (819)
Q Consensus 605 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~ 680 (819)
...|+..+|-..++++++.- +.|..++..--++|.-.|+.+.-...++++.-. ..+|. +.-..+..++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34667777777777777642 446666766667777777777777777776643 12333 2223344455677778
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003449 681 ARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS---GLVPDVITYNTFVASYAADSLFVEALDVV 757 (819)
Q Consensus 681 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 757 (819)
++|++.-++..+.+ +.|...-.++...+...|+++++.++..+-... +-..-...|...+-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 88877777777653 235555566666677777777777776553321 11111224444555566667777787777
Q ss_pred HHHH
Q 003449 758 RYMI 761 (819)
Q Consensus 758 ~~~~ 761 (819)
.+=+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7644
No 257
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.56 E-value=6.2 Score=45.55 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=70.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 003449 632 LNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD--IISYNTVIFAY 709 (819)
Q Consensus 632 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~ 709 (819)
|...++.+.....+++|.-+|+..-+ ....+.+|..+|++.+|+.+..++..- -+ ..+-..|+.-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence 44444555566777777766665322 133466777888888888887776531 12 22235677778
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003449 710 CRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMI 761 (819)
Q Consensus 710 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 761 (819)
...++.-+|.+++.+... . ....+..|++...|++|..+.....
T Consensus 1010 ~e~~kh~eAa~il~e~~s---d-----~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLS---D-----PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHcccchhHHHHHHHHhc---C-----HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 888998899888887654 1 1233445777778888887766554
No 258
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.49 E-value=0.046 Score=35.97 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 003449 736 TYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIV 776 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 776 (819)
++..++..|...|++++|+++++++++. .| |...|..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHHHHHhh
Confidence 5667777788888888888888888773 45 566665554
No 259
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.46 E-value=0.1 Score=45.95 Aligned_cols=55 Identities=20% Similarity=0.176 Sum_probs=23.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 003449 320 LLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQM 375 (819)
Q Consensus 320 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 375 (819)
++..+...|++++|..+++.+... .+-+...|..+|.+|...|+..+|.+.|+++
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 333444444444444444444443 1224444444444444444444444444443
No 260
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.41 E-value=2.7 Score=40.38 Aligned_cols=200 Identities=13% Similarity=0.039 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 003449 560 LTYSSLLHAYANGREIDQMLALSEEIYSG-IIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMIS- 637 (819)
Q Consensus 560 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 637 (819)
..+......+...+.+..+...+...... ........+......+...+.+..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444444555555555555555555432 223334444555555555566666666666665532222 111222222
Q ss_pred HHHhcCChHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 003449 638 IYGRRQMVAKTNEILHFMNDSGF--TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKP-DIISYNTVIFAYCRNGR 714 (819)
Q Consensus 638 ~~~~~~~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 714 (819)
.+...|+++.|...++....... ......+......+...++.+.+...+.+..... .. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56777888888888877755211 0123334444444667788888888888888752 22 35677777788888888
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003449 715 MKEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 715 ~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
+++|...+...... .|+ ...+..+...+...+.++++...+.+..+.
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888873 333 445555666666667788998888888873
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.31 E-value=1.2 Score=47.69 Aligned_cols=26 Identities=19% Similarity=-0.023 Sum_probs=16.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 003449 562 YSSLLHAYANGREIDQMLALSEEIYS 587 (819)
Q Consensus 562 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 587 (819)
+..++....-.|+-+.+++.+.+..+
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~ 216 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASK 216 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhc
Confidence 34445555556777777777776655
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=1.3 Score=42.48 Aligned_cols=140 Identities=13% Similarity=0.107 Sum_probs=99.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003449 672 YMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFV 751 (819)
Q Consensus 672 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 751 (819)
......|++.+|...|+....... -+...-..++.+|...|+.+.|..++..+-..--.........-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345678999999999999997632 2466777888999999999999999998765321112222223445566666666
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCC-HHHHHHHHHHHH
Q 003449 752 EALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT-KELECKLSDRIA 815 (819)
Q Consensus 752 ~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~l~~~l~ 815 (819)
+...+-++.-+ .| |...-..++..|...|+.++|.+.+=.+++.+.... ......|++.+.
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~ 283 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFE 283 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 66666666665 56 778888999999999999999999888887755432 233445555543
No 263
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.24 E-value=1.4 Score=38.25 Aligned_cols=84 Identities=15% Similarity=0.163 Sum_probs=38.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003449 319 ALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAG 398 (819)
Q Consensus 319 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g 398 (819)
.++..+...+.......+++.+...+. .+...++.++..|++.+ ..+.++.+.. . .+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 444444455555555555555555432 34445555555555432 2223333331 0 11122233445555555
Q ss_pred CHHHHHHHHHHH
Q 003449 399 KDESAMKVFEEM 410 (819)
Q Consensus 399 ~~~~A~~~~~~~ 410 (819)
.++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555443
No 264
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.13 E-value=2 Score=37.49 Aligned_cols=123 Identities=9% Similarity=0.079 Sum_probs=68.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCh
Q 003449 675 SRSENFARAEDVLREILAKGIKPDI-ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI---TYNTFVASYAADSLF 750 (819)
Q Consensus 675 ~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---~~~~l~~~~~~~g~~ 750 (819)
...+..++|+.-|..+.+.|..--+ ...........+.|+...|...|+++-.....|-.. .-..-+..+...|-|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 4455666677777776665543211 111222344556677777777777766543333322 111223345566777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 003449 751 VEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 751 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
++...-++-+...+-.-....-..|+.+-++.|++.+|..+|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 77766666665433222344445666667777777777777777665
No 265
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.12 E-value=0.084 Score=50.77 Aligned_cols=94 Identities=18% Similarity=0.219 Sum_probs=59.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcH
Q 003449 707 FAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQR 785 (819)
Q Consensus 707 ~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 785 (819)
+-|.++|.+++|++.|.+... ..| +++++.+-+.+|.+..++..|..=...++..+ ..-...|..-+.+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 346677777777777777665 344 66666677777777777776666666665421 11123344444444556777
Q ss_pred HHHHHHHHHhhhcCCCCC
Q 003449 786 YEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 786 ~~A~~~~~~~~~~~p~~~ 803 (819)
.||.+-++.++++.|++.
T Consensus 182 ~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHhHHHHHhhCcccH
Confidence 777777777777777753
No 266
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.11 E-value=0.31 Score=40.97 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=23.5
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 003449 346 LPSIVTYNSLISAYARDGLLEEAMELKTQMVEI-GITPDVFTYTTLLSGF 394 (819)
Q Consensus 346 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~~~~~l~~~~ 394 (819)
.|+.....+++.+|+.+|++..|+++.+...+. +++-+..+|..|++-+
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344555555555555555555555555444332 3444444555555443
No 267
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.05 E-value=1.3 Score=38.49 Aligned_cols=42 Identities=7% Similarity=0.165 Sum_probs=18.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003449 214 LITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKM 256 (819)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 256 (819)
++..+...+.......+++.+...+. .+....+.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 33334444444444444444444432 3444444455554443
No 268
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.05 E-value=3.2 Score=39.23 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=29.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003449 495 LISAYSRCGSFDQAMSIYKRMLEA--GVTPDLSTYNAVLAALARGGMWEQSEKIFAEMK 551 (819)
Q Consensus 495 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 551 (819)
+.+.|.+.|.+..|..-+++|.+. ...-....+-.+..+|...|-.++|.+.-.-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 445566666666666666666654 111112333344455556666655555444433
No 269
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.96 E-value=1.8 Score=35.86 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=24.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003449 635 MISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKG 694 (819)
Q Consensus 635 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 694 (819)
-++.+...|.-++-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.++-+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444444444444444444322 3444444445555555555555555555554444
No 270
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.95 E-value=0.46 Score=45.04 Aligned_cols=97 Identities=19% Similarity=0.170 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHH
Q 003449 666 TYNTLMYMYSRSENFARAEDVLREILAKGIKP--DIISYNTVIFAYCRNGRMKEASRIFSEMRDSG-LVP-DVITYNTFV 741 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p-~~~~~~~l~ 741 (819)
.|+.-+. +.+.|++..|...|...++....- ....+..|..++...|++++|..+|..+.+.- -.| -+..+..++
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4554444 456677888888888888753211 14566677888888888888888888887741 112 235777888
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 003449 742 ASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 742 ~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
.+..+.|+.++|...++..++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8888888888888888888874
No 271
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.92 E-value=0.75 Score=48.48 Aligned_cols=155 Identities=13% Similarity=0.132 Sum_probs=77.3
Q ss_pred HHhcCChHHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 003449 499 YSRCGSFDQAMSIYK--RMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREID 576 (819)
Q Consensus 499 ~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 576 (819)
..-.|+++.+.++.. .+.. ..+....+.++..+.+.|..+.|+.+..+-. + -.....+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~---~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~---------~---rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP---NIPKDQGQSIARFLEKKGYPELALQFVTDPD---------H---RFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG---G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH---------H---HHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcc---cCChhHHHHHHHHHHHCCCHHHHHhhcCChH---------H---HhHHHHhcCCHH
Confidence 334566666555543 1111 1124446666667777777777776543221 1 122334566666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 003449 577 QMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMN 656 (819)
Q Consensus 577 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 656 (819)
.|.++.++ ..+...|..|+......|+++-|+..|++..+ +..|+-.|...|+.+.-.++.+...
T Consensus 336 ~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 66655332 23455667777777777777777766665542 3445555666666666666665555
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003449 657 DSGFTPSLTTYNTLMYMYSRSENFARAEDVLRE 689 (819)
Q Consensus 657 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 689 (819)
..| -++....++...|+.++..+++.+
T Consensus 401 ~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred Hcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 544 234444455555666666655543
No 272
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.85 E-value=0.54 Score=39.55 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 003449 379 GITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRS-AGCKPNICTFNALIKMHG 430 (819)
Q Consensus 379 g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 430 (819)
...|+..+..+++.+|+..|++..|.++++...+ -+++.+..+|..|++...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4567777777777777777777777777777654 345556677777776544
No 273
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=2.2 Score=41.41 Aligned_cols=154 Identities=5% Similarity=-0.044 Sum_probs=112.8
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCChH
Q 003449 571 NGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTL----NAMISIYGRRQMVA 646 (819)
Q Consensus 571 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~ 646 (819)
..|+..+|...++++++. .+.+...++..-.++...|+...-...++++... ..+|...| ..+..++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 467788888888888875 4777778888888999999999888888888754 23444333 34445567899999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003449 647 KTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK---GIKPDIISYNTVIFAYCRNGRMKEASRIFS 723 (819)
Q Consensus 647 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 723 (819)
+|.+.-++..+.+ +.|...-.+....+...|+..++.++..+-... +.-.-...|...+-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999988765 556666677788888899999999988765432 111113345555666777899999999998
Q ss_pred HHHH
Q 003449 724 EMRD 727 (819)
Q Consensus 724 ~~~~ 727 (819)
.-+-
T Consensus 272 ~ei~ 275 (491)
T KOG2610|consen 272 REIW 275 (491)
T ss_pred HHHH
Confidence 7554
No 274
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.79 E-value=0.039 Score=33.75 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=23.3
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHH
Q 003449 757 VRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAI 789 (819)
Q Consensus 757 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 789 (819)
++++++ +.| |...|..++..|...|++++|+
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 456666 456 6788888888888888888875
No 275
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.57 E-value=0.83 Score=37.54 Aligned_cols=90 Identities=12% Similarity=-0.018 Sum_probs=42.9
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCC
Q 003449 638 IYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDI---ISYNTVIFAYCRNGR 714 (819)
Q Consensus 638 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~ 714 (819)
+....|+.+.|++.|.+.... .+.....||.-..++.-+|+.++|++-+++.++..-.-.. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 344555555666555555543 1334455555555555555555555555555543111111 122222233444555
Q ss_pred HHHHHHHHHHHHHC
Q 003449 715 MKEASRIFSEMRDS 728 (819)
Q Consensus 715 ~~~A~~~~~~~~~~ 728 (819)
.+.|..-|+..-+.
T Consensus 131 dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 131 DDAARADFEAAAQL 144 (175)
T ss_pred hHHHHHhHHHHHHh
Confidence 55555555554443
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.56 E-value=0.033 Score=34.68 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhh
Q 003449 772 YNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 772 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
|..|+..|.+.|++++|++++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666666666666443
No 277
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=8.7 Score=41.89 Aligned_cols=156 Identities=15% Similarity=0.101 Sum_probs=69.4
Q ss_pred HHHHHcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHcC
Q 003449 216 TTYASNGRYREAVMVFKKME-EEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMK-SAGVKPD-SYTFNTLISCCRRG 292 (819)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~-~~g~~p~-~~~~~~ll~~~~~~ 292 (819)
..|...|.+++|+.+--... ...+.++...+.+++.-|...= .+++.+.++.-. ..++.+. ....+.++..|...
T Consensus 67 KVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~y--i~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d 144 (929)
T KOG2062|consen 67 KVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMY--IETASETYKNPEQKSPIDQRLRDIVERMIQKCLDD 144 (929)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHH--HHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhh
Confidence 56777788888877654443 3345566666666665554321 344444444222 1222221 12344444445544
Q ss_pred CCHHHHHHHH---------HH-HHHCCCCCCHHhHHHHHHHHHhCCC-HHHHHHHHHHHHHC---CCCCCHhhHHHHHHH
Q 003449 293 SLHEEAAGVF---------EE-MKLAGFSPDKVTYNALLDVYGKCRR-PKEAMQVLREMKIN---GCLPSIVTYNSLISA 358 (819)
Q Consensus 293 g~~~~A~~~~---------~~-~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~---g~~~~~~~~~~li~~ 358 (819)
+++..|..+. ++ ..+.. .+....+.++..+....+ -+--.++++.+.+. +..|| |..+..+
T Consensus 145 ~e~~~aiGia~E~~rld~ie~Ail~~d--~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PD---y~~vc~c 219 (929)
T KOG2062|consen 145 NEYKQAIGIAFETRRLDIIEEAILKSD--SVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPD---YFSVCQC 219 (929)
T ss_pred hHHHHHHhHHhhhhhHHHHHHHhcccc--ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCC---eeeeeee
Confidence 4444443332 22 11111 111122233333222222 22222233332221 23344 3345566
Q ss_pred HHHcCCHHHHHHHHHHHHHc
Q 003449 359 YARDGLLEEAMELKTQMVEI 378 (819)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~ 378 (819)
|....+.+.+.++++++.+.
T Consensus 220 ~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 220 YVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eEEcCCHHHHHHHHHHHHhc
Confidence 66667777777777777663
No 278
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.53 E-value=0.35 Score=45.42 Aligned_cols=88 Identities=26% Similarity=0.385 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003449 223 RYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVF 302 (819)
Q Consensus 223 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 302 (819)
..+--...++.|.+.|+..|..+|+.|++.+-|... .|... |..+.--|= .+-+-+.+++
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf-----------------iP~nv-fQ~~F~HYP--~QQ~C~I~vL 146 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF-----------------IPQNV-FQKVFLHYP--QQQNCAIKVL 146 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc-----------------ccHHH-HHHHHhhCc--hhhhHHHHHH
Confidence 345555566788899999999999999998876441 12111 111111111 2334577788
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhCCCH
Q 003449 303 EEMKLAGFSPDKVTYNALLDVYGKCRRP 330 (819)
Q Consensus 303 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 330 (819)
++|...|+-||..+-..|++++++.+-.
T Consensus 147 eqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 147 EQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 8888888888888888888888777653
No 279
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.30 E-value=0.56 Score=49.42 Aligned_cols=100 Identities=18% Similarity=0.188 Sum_probs=50.8
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003449 324 YGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESA 403 (819)
Q Consensus 324 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A 403 (819)
..+.|+++.|.++.++. .+...|..|.....++|+++-|.+.|.+..+ +..|+-.|...|+.+.-
T Consensus 328 Al~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 34556666665554432 2455666666666666666666666665432 34444455556666555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003449 404 MKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDE 444 (819)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 444 (819)
.++.+.....| -++....++.-.|++++..+++.+
T Consensus 393 ~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 393 SKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555443 123333344445555555555543
No 280
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.30 E-value=4.9 Score=38.01 Aligned_cols=53 Identities=17% Similarity=0.012 Sum_probs=25.8
Q ss_pred cCCCHHHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 003449 291 RGSLHEEAAGVFEEMKLAGF--SPDKVTYNALLDVYGKCRRPKEAMQVLREMKIN 343 (819)
Q Consensus 291 ~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 343 (819)
+.|++++|...|+.+..... +-...+.-.++.++.+.+++++|+..+++....
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 44556666666665554411 111223333444555555555555555555443
No 281
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.28 E-value=0.075 Score=32.48 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC
Q 003449 770 NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 770 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
.+|..++..|...|++++|.+.++++.+.+|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46778888888888888888888888888773
No 282
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.16 E-value=3.8 Score=36.25 Aligned_cols=131 Identities=15% Similarity=0.229 Sum_probs=65.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCC--HHHHHHHHHHHHHC
Q 003449 266 LVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRR--PKEAMQVLREMKIN 343 (819)
Q Consensus 266 ~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~ 343 (819)
.+..+.+.++.|+...+..++..+.+.|++.. +..+...++-+|.......+-.+..... ..-|++++.++.
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~-- 89 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG-- 89 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh--
Confidence 33444455666777777777777777776553 3334444555555444433322222110 222333333332
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003449 344 GCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRS 412 (819)
Q Consensus 344 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 412 (819)
..+..++..+...|++-+|+++.+..... +......++++..+.+|...-..+++-..+
T Consensus 90 ------~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ------TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ------hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12455666777777777777776664222 112223345555555555554444444433
No 283
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.14 E-value=3.9 Score=42.44 Aligned_cols=63 Identities=16% Similarity=0.097 Sum_probs=41.3
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003449 315 VTYNALLDVYGKCRRPKEAMQVLREMKINGCL-PSIVTYNSLISAYARDGLLEEAMELKTQMVE 377 (819)
Q Consensus 315 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 377 (819)
.+-..|..+..+.|+.++|.+.+++|.+.... .+......|+.++...+.+.++..++.+..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33345566666778888888888777654222 1333556677777777888887777777654
No 284
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.10 E-value=2.9 Score=34.66 Aligned_cols=63 Identities=17% Similarity=0.341 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003449 457 WNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGV 520 (819)
Q Consensus 457 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 520 (819)
.+..+..+...|+.++-.+++.++.+ +-.+++.....+..+|.+.|+..++.+++.+..+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444555555666665566555544 2234555555566666666666666666666555544
No 285
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.02 E-value=7.1 Score=38.79 Aligned_cols=49 Identities=18% Similarity=0.348 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHHCC
Q 003449 366 EEAMELKTQMVEIGITPDVFTYTTLLSGFEK--A----GKDESAMKVFEEMRSAG 414 (819)
Q Consensus 366 ~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~ 414 (819)
++.+.+++.|++.|+.-+..+|.+....... . .....|..+|+.|++..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 3445566666666666655555442222221 1 12345666666666543
No 286
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.01 E-value=1.2 Score=36.93 Aligned_cols=74 Identities=11% Similarity=0.198 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 731 VPDVITYNTFVASYAADSL---FVEALDVVRYMIKQGCKP--NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 731 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
.++..+-..+++++.+..+ ..+.+.+++...+. -.| +....+.|+-++++.|++++++++.+.+++.+|++...
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 5566677788888887754 56777888888862 233 34556677888889999999999999999999988766
No 287
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.89 E-value=7.4 Score=38.56 Aligned_cols=16 Identities=6% Similarity=-0.132 Sum_probs=9.5
Q ss_pred HHhcCChHHHHHHHHH
Q 003449 464 FGQNGMDSEVSGVFKE 479 (819)
Q Consensus 464 ~~~~g~~~~a~~~~~~ 479 (819)
+.+.+++++|.+.|+-
T Consensus 256 ~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHhhcCHHHHHHHHHH
Confidence 3455666666666654
No 288
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.85 E-value=7.5 Score=38.51 Aligned_cols=20 Identities=20% Similarity=0.046 Sum_probs=11.9
Q ss_pred HHHHhcCcHHHHHHHHHHhh
Q 003449 777 DGYCKLNQRYEAITFVNNLS 796 (819)
Q Consensus 777 ~~~~~~g~~~~A~~~~~~~~ 796 (819)
..+++.+++++|..+|+-++
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34456666666666666443
No 289
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.79 E-value=9.5 Score=39.49 Aligned_cols=108 Identities=13% Similarity=0.103 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-------
Q 003449 698 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP---DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP------- 767 (819)
Q Consensus 698 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p------- 767 (819)
...+|..++..+.+.|+++.|...+.++...+... ++......+..+...|+..+|+..++..++..+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 46788899999999999999999999988743211 34455666777889999999999998887611111
Q ss_pred -------------------C-------HHHHHHHHHHHHhc------CcHHHHHHHHHHhhhcCCCCCHH
Q 003449 768 -------------------N-------QNTYNSIVDGYCKL------NQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 768 -------------------~-------~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
+ ...+..++..+... +..+++.+.|+++.+..|.....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~ 294 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKA 294 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHH
Confidence 1 23444555555555 88899999999999998877553
No 290
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.79 E-value=3.9 Score=36.75 Aligned_cols=93 Identities=13% Similarity=0.093 Sum_probs=70.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003449 670 LMYMYSRSENFARAEDVLREILAKGIKPD--IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD 747 (819)
Q Consensus 670 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 747 (819)
+...+...+++++|+..++..+......+ ...--.|.....+.|.+|+|.+.++...+.+.. ......-++.+...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHc
Confidence 45668889999999999998886421111 223334567888999999999999988765433 33455677889999
Q ss_pred CChHHHHHHHHHHHHcC
Q 003449 748 SLFVEALDVVRYMIKQG 764 (819)
Q Consensus 748 g~~~~A~~~~~~~~~~g 764 (819)
|+-++|+..|+++++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999999865
No 291
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.52 E-value=2.2 Score=38.63 Aligned_cols=100 Identities=12% Similarity=0.021 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHH--
Q 003449 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV--ITYNTFVASYAADSLFVEALDVVRYMIKQ---GCKPNQNT-- 771 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~-- 771 (819)
...+..++..|++.|+.++|.+.|.++.+....+.. ..+..++......|++..+...+.++... |-..+...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 456677778888888888888888888775444333 35567777777888888888877777542 11111111
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhc
Q 003449 772 YNSIVDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 772 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
-..-+-.+...|++.+|...|-...--
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 111222344678888888777665433
No 292
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.52 E-value=9 Score=38.37 Aligned_cols=158 Identities=13% Similarity=0.089 Sum_probs=96.5
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----
Q 003449 643 QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR----SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG----- 713 (819)
Q Consensus 643 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----- 713 (819)
.+..+|.+.+..+.+.|. ......+...|.. ..+..+|..+++++.+.|..+.......+...|...+
T Consensus 91 ~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 91 RDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred ccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 345666666666555542 1222234444433 3377778888887777764332222334444443321
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----
Q 003449 714 --RMKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLN---- 783 (819)
Q Consensus 714 --~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---- 783 (819)
+...|...+.++...+ +......++..|.. ..+..+|..+|+++.+.|. ......+. .+...|
T Consensus 168 ~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~ 240 (292)
T COG0790 168 AYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVK 240 (292)
T ss_pred cHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCch
Confidence 2346888888887765 44555566655543 3368889999999888764 44444555 555555
Q ss_pred -----------cHHHHHHHHHHhhhcCCCCCHHHHHHH
Q 003449 784 -----------QRYEAITFVNNLSKLDPHVTKELECKL 810 (819)
Q Consensus 784 -----------~~~~A~~~~~~~~~~~p~~~~~~~~~l 810 (819)
+...|..++......++.........+
T Consensus 241 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 278 (292)
T COG0790 241 KAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRAL 278 (292)
T ss_pred hhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 888899999999988888777766643
No 293
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.50 E-value=0.8 Score=44.24 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHH
Q 003449 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK-----QGCKPNQNTYN 773 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~ 773 (819)
..++..++..+...|+.+.+...++++...... +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 445555556666666666666666666653211 445566666666666666666666665543 35555544443
Q ss_pred H
Q 003449 774 S 774 (819)
Q Consensus 774 ~ 774 (819)
.
T Consensus 232 ~ 232 (280)
T COG3629 232 L 232 (280)
T ss_pred H
Confidence 3
No 294
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.48 E-value=0.77 Score=43.30 Aligned_cols=88 Identities=15% Similarity=0.322 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003449 398 GKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVF 477 (819)
Q Consensus 398 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 477 (819)
+.++-....++.|.+-|+..|..+|+.|++.+-+-.-.-. .+|+.. .-.|- .+-+-+++++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~~---------------F~HYP--~QQ~C~I~vL 146 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQKV---------------FLHYP--QQQNCAIKVL 146 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHHH---------------HhhCc--hhhhHHHHHH
Confidence 3344444455666666666677777766665533221100 111111 11111 1223456777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003449 478 KEMKRAGFIPERDTFNTLISAYSRCGS 504 (819)
Q Consensus 478 ~~m~~~~~~~~~~~~~~l~~~~~~~g~ 504 (819)
++|...|+.||..+-..|++++.+.+-
T Consensus 147 eqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 147 EQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHcCCCCchHHHHHHHHHhccccc
Confidence 777777777777777777777776663
No 295
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.28 E-value=1.3 Score=40.17 Aligned_cols=93 Identities=18% Similarity=0.183 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHH
Q 003449 352 YNSLISAYARDGLLEEAMELKTQMVEIGITPDVF--TYTTLLSGFEKAGKDESAMKVFEEMRSA---GCKPN----ICTF 422 (819)
Q Consensus 352 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~ 422 (819)
+..+...|++.|+.++|++.|.++.+....+... .+..+|+.....|++..+...+.+.... |...+ ..+|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 4445555555555555555555555543332222 3444555555556666555555544322 11111 1222
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHh
Q 003449 423 NALIKMHGNRGNFVEMMKVFDEIN 446 (819)
Q Consensus 423 ~~l~~~~~~~g~~~~A~~~~~~~~ 446 (819)
..+. +...+++..|-+.|-+..
T Consensus 119 ~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 119 EGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHhchHHHHHHHHHccC
Confidence 2222 223567777777776554
No 296
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.28 E-value=17 Score=40.87 Aligned_cols=203 Identities=11% Similarity=0.056 Sum_probs=109.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHH-HHhcCChHHHHHHHHHHhhC----CCCCCHHH
Q 003449 599 TLILVYSKSDLLMDTERAFLELKKKGFSPDI-------PTLNAMISI-YGRRQMVAKTNEILHFMNDS----GFTPSLTT 666 (819)
Q Consensus 599 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~----~~~p~~~~ 666 (819)
.-+.......++.+|..+..++...-..|+. ..++.+-.. ....|++++|.++.+..... ...+....
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 3344455667777777777776543222221 123333322 24578888888888777653 12334455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHH--HHHHHhcCC--HHHHHHHHHHHHHCC--CCC----C
Q 003449 667 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISY---NTV--IFAYCRNGR--MKEASRIFSEMRDSG--LVP----D 733 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~l--~~~~~~~g~--~~~A~~~~~~~~~~g--~~p----~ 733 (819)
+..+..+..-.|++++|..+.++..+..-.-++..+ ..+ ...+..+|. +.+....+....... -.| -
T Consensus 500 ~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~ 579 (894)
T COG2909 500 LSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFL 579 (894)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhH
Confidence 677778888889999998888776643112233222 222 234556673 333344444443321 111 1
Q ss_pred HHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCC-CH-HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC
Q 003449 734 VITYNTFVASYAA-DSLFVEALDVVRYMIKQGCKP-NQ-NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 734 ~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~g~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
.-++..+.+++.+ .+.-.+|...++--......| +. ..+..++..+...|+.++|...+.++..+.-.
T Consensus 580 ~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 580 VRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 2244455555544 223334444444443332223 11 22236788888999999999998887765433
No 297
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.16 E-value=0.17 Score=30.52 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC
Q 003449 771 TYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 771 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
.+..++.++.+.|++++|.+.++++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3456777777778888888888887777775
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.12 E-value=4.5 Score=35.26 Aligned_cols=120 Identities=13% Similarity=0.063 Sum_probs=61.8
Q ss_pred HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003449 664 LTTYNTLMYM---YSRSENFARAEDVLREILAKGIKPDIISYN-TVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNT 739 (819)
Q Consensus 664 ~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 739 (819)
..+.+.|+.. -.+.++.+++..+++.+.-. .|...... .-...+...|++.+|..+|+++.+.... .+..-..
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~-~p~~kAL 83 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPG-FPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC-ChHHHHH
Confidence 3444444443 35667888888888877763 45422222 2234466778888888888887664211 2222223
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHH
Q 003449 740 FVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAIT 790 (819)
Q Consensus 740 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 790 (819)
++.++...|+ ..=..+.+++.+.+-.|+.. .++..+....+...|..
T Consensus 84 lA~CL~~~~D-~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 84 LALCLYALGD-PSWRRYADEVLESGADPDAR---ALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHcCC-hHHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchhh
Confidence 3333444444 22333445555543333322 34444545445444444
No 299
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.86 E-value=11 Score=37.48 Aligned_cols=48 Identities=27% Similarity=0.397 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh--CC----CHHHHHHHHHHHHHC
Q 003449 296 EEAAGVFEEMKLAGFSPDKVTYNALLDVYGK--CR----RPKEAMQVLREMKIN 343 (819)
Q Consensus 296 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~ 343 (819)
++...+++.|.+.|+..+..+|-+....... .. ....|..+|+.|.+.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 3344566666666666665554442222221 11 234556666666654
No 300
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.81 E-value=14 Score=38.56 Aligned_cols=165 Identities=11% Similarity=0.135 Sum_probs=103.8
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003449 591 EPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTL 670 (819)
Q Consensus 591 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 670 (819)
..+...+.+++..+...-.++-.+.+..++...| .+...+..++..|... ..++-..+|+++.+..+ .|.+.-..+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 4566667777777877777777788888887764 3566677777877777 46777788888777642 233333444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 003449 671 MYMYSRSENFARAEDVLREILAKGIKPD------IISYNTVIFAYCRNGRMKEASRIFSEMRDS-GLVPDVITYNTFVAS 743 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~ 743 (819)
+.-|. .++.+++..+|.++... +-|. ...|..+... -..+.+....+..++.+. |..--.+.+..+-.-
T Consensus 139 a~~yE-kik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 139 ADKYE-KIKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHH-HhchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 44444 47888888888887754 2221 2344444431 134566666666666653 333233445555566
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 003449 744 YAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~~ 763 (819)
|....++++|+++++.+++.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 215 YSENENWTEAIRILKHILEH 234 (711)
T ss_pred hccccCHHHHHHHHHHHhhh
Confidence 67777788888888877764
No 301
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.73 E-value=1.3 Score=39.23 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHH-------HHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 003449 680 FARAEDVLREILAKGIKPDIISYNTVIFAYCRN---GRMKEASRI-------FSEMRDSGLVPDV-ITYNTFVASYAADS 748 (819)
Q Consensus 680 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~-------~~~~~~~g~~p~~-~~~~~l~~~~~~~g 748 (819)
++.|.+..+.....+ +.|...++....++... ....++.++ |++.+. +.|+. .++..++.+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 566666666655443 23555555555444433 222333333 333333 55654 46777777766543
Q ss_pred C-----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003449 749 L-----------FVEALDVVRYMIKQGCKPNQNTYNSIVDG 778 (819)
Q Consensus 749 ~-----------~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 778 (819)
. |++|.+.|+++.+ .+|+...|+.-+..
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEM 122 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHH
Confidence 3 4455555555555 45666666554443
No 302
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.73 E-value=0.26 Score=30.56 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 736 TYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+|..++..|.+.|++++|++++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888653
No 303
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.55 E-value=0.41 Score=32.74 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 772 YNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 772 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
...++-++.+.|++++|.+..+.+++.+|++...
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 4567778888889999999999888888888655
No 304
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.37 E-value=23 Score=39.92 Aligned_cols=167 Identities=13% Similarity=0.132 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHCCCCCCHH-----hHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CCCC
Q 003449 279 SYTFNTLISCCR-RGSLHEEAAGVFEEMKLAGFSPDKV-----TYNALLDVYGKCRRPKEAMQVLREMKING----CLPS 348 (819)
Q Consensus 279 ~~~~~~ll~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~~~ 348 (819)
..++..+...+. ...++++|+..+++.....-.++.. ....++..+.+.+... |...+++..+.- ..+-
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 334555555555 5677888888887664432222211 2234566676666666 888877765531 1111
Q ss_pred HhhHHHH-HHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCC--------
Q 003449 349 IVTYNSL-ISAYARDGLLEEAMELKTQMVEIG---ITPDVFTYTTLLSGFE--KAGKDESAMKVFEEMRSAG-------- 414 (819)
Q Consensus 349 ~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~pd~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~-------- 414 (819)
...+..+ +..+...+++..|.+.++.+...- ..|-...+..++.+.. ..+..+++.+.++.+....
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~ 217 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPS 217 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCC
Confidence 2222222 222323378888888888776542 2223334444444443 3455566666666653321
Q ss_pred -CCCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHh
Q 003449 415 -CKPNICTFNALIKMHG--NRGNFVEMMKVFDEIN 446 (819)
Q Consensus 415 -~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~ 446 (819)
..|-..+|..+++.++ ..|+++.+...++++.
T Consensus 218 ~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 218 VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1234556666665554 5666666666665553
No 305
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.31 E-value=10 Score=36.38 Aligned_cols=69 Identities=13% Similarity=0.231 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhh-----hcCCCCCHHH
Q 003449 736 TYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLS-----KLDPHVTKEL 806 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~p~~~~~~ 806 (819)
.+...+..|..+|.+.+|..+.++.+. +.| +...|..+...|...||--+|.+.++++. +.+.+.++..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 345566778899999999999999998 556 88889999999999999888888777754 3455544443
No 306
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.13 E-value=0.37 Score=29.33 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 736 TYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+|..++.++...|++++|+..++++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566666777777777777777777766
No 307
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.06 E-value=23 Score=39.25 Aligned_cols=77 Identities=10% Similarity=0.021 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCh
Q 003449 679 NFARAEDVLREILAKGIKPDIISYNTVIFAYCRN----GRMKEASRIFSEMRDSGLVPDVITYNTFVASYA----ADSLF 750 (819)
Q Consensus 679 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~----~~g~~ 750 (819)
+...+...+.+....| +......+.+.|... .+.+.|...+......+ ......++..+- -.. +
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~ 525 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-L 525 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-h
Confidence 4556666666666554 444555555544432 24677777777766654 333334443332 122 5
Q ss_pred HHHHHHHHHHHHc
Q 003449 751 VEALDVVRYMIKQ 763 (819)
Q Consensus 751 ~~A~~~~~~~~~~ 763 (819)
..|.+++..+.+.
T Consensus 526 ~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 526 HLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHHhc
Confidence 6777777777653
No 308
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.05 E-value=2.9 Score=42.97 Aligned_cols=110 Identities=14% Similarity=0.055 Sum_probs=76.8
Q ss_pred HHHHhcCCHHHHHHHHHHHH---HCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCCH--
Q 003449 672 YMYSRSENFARAEDVLREIL---AKGIKPD-----IISYNTVIFAYCRNGRMKEASRIFSEMRD-------SGLVPDV-- 734 (819)
Q Consensus 672 ~~~~~~g~~~~A~~~~~~~~---~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~g~~p~~-- 734 (819)
..+...|++.+|.+++...- ..|.... -..||.|...+.+.|.+.-+..+|.+..+ .|+.|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 34566789999988876543 1221111 23356777777777888888777777764 4655543
Q ss_pred --------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003449 735 --------ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKL 782 (819)
Q Consensus 735 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 782 (819)
......+-.|...|+.-.|.+.+.+.... +..++..|..++.+|...
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 23445566788999999999999999875 567899999999998743
No 309
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.99 E-value=24 Score=39.50 Aligned_cols=17 Identities=18% Similarity=0.389 Sum_probs=9.6
Q ss_pred HHhcCCHHHHHHHHHHH
Q 003449 709 YCRNGRMKEASRIFSEM 725 (819)
Q Consensus 709 ~~~~g~~~~A~~~~~~~ 725 (819)
+...|++++|++.++++
T Consensus 515 ~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHTT-HHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHhC
Confidence 44566677766655554
No 310
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.95 E-value=2.7 Score=33.00 Aligned_cols=62 Identities=6% Similarity=0.061 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 003449 752 EALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRI 814 (819)
Q Consensus 752 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l 814 (819)
+..+-++.+...++-|++.+..+.+++|.+.+++--|.++++-+..+-.+... +|..+++.|
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~-~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE-IYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT-HHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH-HHHHHHHHH
Confidence 55555666666667777777777777777777777777777776655333322 555555544
No 311
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.79 E-value=8.5 Score=33.79 Aligned_cols=54 Identities=24% Similarity=0.298 Sum_probs=25.1
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003449 184 GKEGKVSVAASLLHGLHKDGFDIDV-YAYTSLITTYASNGRYREAVMVFKKMEEE 237 (819)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 237 (819)
+..++.++|...|.++.+.|...-+ -...-+.......|+...|+..|+++-..
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 3455555555555555555443111 11222223344455555555555555444
No 312
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.73 E-value=0.43 Score=28.96 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 736 TYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.+..++.++...|++++|++.++++++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456677777777777777777777776
No 313
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.34 E-value=3 Score=39.05 Aligned_cols=105 Identities=15% Similarity=0.066 Sum_probs=62.9
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCCH--HHHHHHHHHHHhcCC-------hHHHHHHHHHHHHcCCCC-----CHHHH
Q 003449 711 RNGRMKEASRIFSEMRDS----GLVPDV--ITYNTFVASYAADSL-------FVEALDVVRYMIKQGCKP-----NQNTY 772 (819)
Q Consensus 711 ~~g~~~~A~~~~~~~~~~----g~~p~~--~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~g~~p-----~~~~~ 772 (819)
....+++|.+.+.-+.-. +..+.. ..+..++|.|...|+ ...|.+.|+++.+..-.| +..+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 334456666555544321 223332 356677777777777 445666666665432222 24566
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhc
Q 003449 773 NSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAKKW 818 (819)
Q Consensus 773 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~~~~ 818 (819)
..++..+.+.|+.++|.+++.++....-.+. ...+++.-...|
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~---~~~l~~~AR~~w 211 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASK---EPKLKDMARDQW 211 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC---cHHHHHHHHHHH
Confidence 6788888999999999999999987755544 234444444444
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.18 E-value=28 Score=38.57 Aligned_cols=170 Identities=13% Similarity=0.138 Sum_probs=97.1
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003449 180 ISMLGKEGKVSVAASLLHGLHKDGFD-IDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGM 258 (819)
Q Consensus 180 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 258 (819)
++.+.+.+.+++|..+.......-.. .-..++...|..|.-.|++++|-...-.|... +...|-.-+..+...+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~- 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD- 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc-
Confidence 55666788899998887765433111 13467888899999999999999999888765 6677777766666655
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHH
Q 003449 259 PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLR 338 (819)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 338 (819)
.... ++.-+.......+...|..++..|.. ......++..... ....|+.+...-.- ..-++
T Consensus 438 ~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~----~~~~~F~e~i~~W----p~~Lys~l~iisa~-------~~q~~ 499 (846)
T KOG2066|consen 438 QLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA----SDVKGFLELIKEW----PGHLYSVLTIISAT-------EPQIK 499 (846)
T ss_pred ccch---hhccCCCCCcccCchHHHHHHHHHHH----HHHHHHHHHHHhC----ChhhhhhhHHHhhc-------chHHH
Confidence 2222 22222222223456678888777766 2222233333332 22233333211111 11111
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003449 339 EMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVE 377 (819)
Q Consensus 339 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 377 (819)
+-. . +...-..|+..|...+++..|++++-..++
T Consensus 500 q~S----e-~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 500 QNS----E-STALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred hhc----c-chhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 110 1 111222377888888888888888777654
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.56 E-value=3.6 Score=37.39 Aligned_cols=81 Identities=16% Similarity=0.182 Sum_probs=57.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCcH
Q 003449 709 YCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ---GCKPNQNTYNSIVDGYCKLNQR 785 (819)
Q Consensus 709 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~ 785 (819)
+.+.|+ ++|.+.|-.+...+..-++.....++. |....+.++|+.++-++++. +-.+|+.++.+|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344455 778888888777665556555556554 44466778888888888753 2255788888899999888888
Q ss_pred HHHHHH
Q 003449 786 YEAITF 791 (819)
Q Consensus 786 ~~A~~~ 791 (819)
++|--+
T Consensus 195 e~AYiw 200 (203)
T PF11207_consen 195 EQAYIW 200 (203)
T ss_pred hhhhhh
Confidence 887543
No 316
>PRK09687 putative lyase; Provisional
Probab=90.38 E-value=20 Score=35.48 Aligned_cols=125 Identities=16% Similarity=0.113 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003449 662 PSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG-RMKEASRIFSEMRDSGLVPDVITYNTF 740 (819)
Q Consensus 662 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l 740 (819)
++..+-...+.++.+.++ ++|...+-.+.+. +|..+-...+.++.+.+ ..+++...+..+.. .++..+-...
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A 212 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEA 212 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHH
Confidence 355566666777777766 4566666666652 34444444444555442 24566666666664 4466666677
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCC
Q 003449 741 VASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 741 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 800 (819)
+.++.+.|+ ..|+..+-+.++.+ + .....+.++...|+- +|...+.++.+..+
T Consensus 213 ~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 213 IIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 777777776 56777777776532 2 234677777788874 78888888888766
No 317
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.29 E-value=9.4 Score=32.75 Aligned_cols=61 Identities=21% Similarity=0.316 Sum_probs=34.6
Q ss_pred HHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003449 664 LTTYNTLMYMY---SRSENFARAEDVLREILAKGIKPD---IISYNTVIFAYCRNGRMKEASRIFSEMRDS 728 (819)
Q Consensus 664 ~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 728 (819)
..+.+.|+... ...++.+++..+++.+.-. .|+ ..++.. ..+...|++++|..+|.++.+.
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVL--RPNLKELDMFDG--WLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHH--HHHHHcCCHHHHHHHHHhhhcc
Confidence 33444444432 3466777777777776653 343 233332 3356667777777777777664
No 318
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.25 E-value=15 Score=33.75 Aligned_cols=188 Identities=12% Similarity=0.018 Sum_probs=93.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003449 603 VYSKSDLLMDTERAFLELKKKGFSPD-IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFA 681 (819)
Q Consensus 603 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 681 (819)
.|...|-+.-|+--|.+.... .|+ ...||.+.--+...|+++.|.+.|+...+... ....+...-.-++.--|+++
T Consensus 74 lYDSlGL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp-~y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCC-cchHHHhccceeeeecCchH
Confidence 344455555666666655543 344 45567666666777888888888887776531 12222222222334457777
Q ss_pred HHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003449 682 RAEDVLREILAKGIK-PDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYM 760 (819)
Q Consensus 682 ~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 760 (819)
-|.+-+.+.-+.+.. |-...|-.+. -..-+..+|..-+.+--+ ..|..-|...+..+.-..-.++ .+++++
T Consensus 151 LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e--~l~~~~ 222 (297)
T COG4785 151 LAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEE--TLMERL 222 (297)
T ss_pred hhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHH--HHHHHH
Confidence 777766666554321 1122332222 122345555543333221 1233344433333322211111 223333
Q ss_pred HHcCCCCC-------HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCC
Q 003449 761 IKQGCKPN-------QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 761 ~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
++. -..+ ..+|..++..+...|+.++|..+|+-+..-+..+
T Consensus 223 ~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 223 KAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred Hhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHH
Confidence 321 1111 3567777777777788888888777776654444
No 319
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.15 E-value=2.7 Score=37.26 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---cCC-------HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 003449 645 VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR---SEN-------FARAEDVLREILAKGIKPD-IISYNTVIFAYCRNG 713 (819)
Q Consensus 645 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~-------~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 713 (819)
++.|.+..+...... +.|...++.-..++.. ..+ +++|+.-|++++. +.|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 677777777755543 5566665555554433 333 3444555555555 4566 578888888887654
Q ss_pred C-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003449 714 R-----------MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGC 765 (819)
Q Consensus 714 ~-----------~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 765 (819)
. +++|.+.|++... ..|+...|..-+... ++|-++..++.+.+.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 3 4555555665555 578888887655543 457777777776543
No 320
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.15 E-value=3.7 Score=39.85 Aligned_cols=78 Identities=17% Similarity=0.215 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 003449 664 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD-----SGLVPDVITYN 738 (819)
Q Consensus 664 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~ 738 (819)
..++..++..+...|+++.+.+.+++++... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3456667777777888888888888888764 33677888888888888888888888877765 36666665554
Q ss_pred HHHH
Q 003449 739 TFVA 742 (819)
Q Consensus 739 ~l~~ 742 (819)
.+..
T Consensus 232 ~y~~ 235 (280)
T COG3629 232 LYEE 235 (280)
T ss_pred HHHH
Confidence 4433
No 321
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.96 E-value=7.2 Score=35.09 Aligned_cols=86 Identities=15% Similarity=0.174 Sum_probs=50.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhc
Q 003449 674 YSRSENFARAEDVLREILAKGIKPD-----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAAD 747 (819)
Q Consensus 674 ~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~ 747 (819)
+.+.|++++|..-|..++.. +++. ...|..-..++.+.+.++.|++-..+.++. .|.. ..+..-+.+|.+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHHhh
Confidence 44566666666666666653 2221 234444445666677777777777766663 3322 2333445566666
Q ss_pred CChHHHHHHHHHHHH
Q 003449 748 SLFVEALDVVRYMIK 762 (819)
Q Consensus 748 g~~~~A~~~~~~~~~ 762 (819)
.++++|++=|+++++
T Consensus 182 ek~eealeDyKki~E 196 (271)
T KOG4234|consen 182 EKYEEALEDYKKILE 196 (271)
T ss_pred hhHHHHHHHHHHHHH
Confidence 777777777777776
No 322
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.93 E-value=38 Score=38.12 Aligned_cols=187 Identities=13% Similarity=0.098 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHH-CCCCCCH--HhHHHHHHHHH-hCCCHHHHHHHHHHHHHCCCCCCHh-----hHHHHHHHHHHcCC
Q 003449 294 LHEEAAGVFEEMKL-AGFSPDK--VTYNALLDVYG-KCRRPKEAMQVLREMKINGCLPSIV-----TYNSLISAYARDGL 364 (819)
Q Consensus 294 ~~~~A~~~~~~~~~-~~~~~~~--~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~g~~~~~~-----~~~~li~~~~~~g~ 364 (819)
-+..|.+.++.+.+ ..++|.. .++-.+...+. ...++++|+..+++....--.++.. ....++..+.+.+.
T Consensus 36 LI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~ 115 (608)
T PF10345_consen 36 LIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP 115 (608)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH
Confidence 35666777777663 3333332 34445555555 5677888888877664431112211 12344555655555
Q ss_pred HHHHHHHHHHHHHcCCC----CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH--ccCC
Q 003449 365 LEEAMELKTQMVEIGIT----PDVFTYTTL-LSGFEKAGKDESAMKVFEEMRSAG---CKPNICTFNALIKMHG--NRGN 434 (819)
Q Consensus 365 ~~~A~~~~~~m~~~g~~----pd~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~ 434 (819)
.. |....++.++.--. +-...+.-+ +..+...++...|.+.++.+...- ..+...++..++.+.. ..+.
T Consensus 116 ~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 116 KA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred HH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 55 77777776553111 111122222 222222367777777777665432 1223334444443332 3444
Q ss_pred HHHHHHHHHHHhhCCC---------CCCHHHHHHHHHHH--HhcCChHHHHHHHHHHH
Q 003449 435 FVEMMKVFDEINKCNC---------KPDIVTWNTLLAVF--GQNGMDSEVSGVFKEMK 481 (819)
Q Consensus 435 ~~~A~~~~~~~~~~~~---------~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~ 481 (819)
.+++.+.++++..... .|...+|..+++.+ ...|+++.+...++++.
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666655533211 12344444444433 34555555555554443
No 323
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.65 E-value=7.3 Score=30.36 Aligned_cols=64 Identities=11% Similarity=0.041 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 003449 750 FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRI 814 (819)
Q Consensus 750 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l 814 (819)
.-++.+-++.+...++.|++.+..+.+++|.+.+|+.-|.++++-+..+-..+ ..+|..+++.+
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~-~~~y~~~lqei 86 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAH-KEIYPYILQEI 86 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCc-hhhHHHHHHHH
Confidence 34556666666666677777777777777777777777777777666443322 33555555543
No 324
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.32 E-value=22 Score=34.37 Aligned_cols=57 Identities=18% Similarity=0.116 Sum_probs=33.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003449 319 ALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMV 376 (819)
Q Consensus 319 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 376 (819)
.....|.++|.+.+|.++.+..... .+.+...|..|+..++..|+--.|.+-++++.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3345566666666666666666554 23355556666666666666555555555553
No 325
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.03 E-value=3.5 Score=37.60 Aligned_cols=59 Identities=8% Similarity=0.048 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 703 NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 703 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+.-+..+.+.+.+++|+...+.-++.... |...-..+...||-.|+|++|..-++.+-+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 33445556666667777666665554221 344555666666777777777666666655
No 326
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.01 E-value=0.54 Score=28.70 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhcCChHHH
Q 003449 735 ITYNTFVASYAADSLFVEA 753 (819)
Q Consensus 735 ~~~~~l~~~~~~~g~~~~A 753 (819)
..|..++..|...|++++|
T Consensus 14 ~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 14 EAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHCcCHHhh
Confidence 3444444444444444444
No 327
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.57 E-value=5.1 Score=42.45 Aligned_cols=147 Identities=18% Similarity=0.182 Sum_probs=75.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003449 327 CRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKV 406 (819)
Q Consensus 327 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~ 406 (819)
.|+++.|..++..+. ....+.++..+-+.|..++|+++ .+|..-. .....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHH
Confidence 455555555444431 22345556666666666666654 2222211 2233456777777666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003449 407 FEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFI 486 (819)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 486 (819)
..+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+.+....+-....+.|..
T Consensus 660 a~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~ 724 (794)
T KOG0276|consen 660 AVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN 724 (794)
T ss_pred HHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc
Confidence 55432 445566777777777777777776665442 334455555555554444444444433321
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003449 487 PERDTFNTLISAYSRCGSFDQAMSIYK 513 (819)
Q Consensus 487 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 513 (819)
|....+|...|+++++.+++.
T Consensus 725 ------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 725 ------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred ------chHHHHHHHcCCHHHHHHHHH
Confidence 112223444555555555543
No 328
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=88.35 E-value=4.4 Score=37.58 Aligned_cols=118 Identities=11% Similarity=0.065 Sum_probs=78.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCh
Q 003449 673 MYSRSENFARAEDVLREILAKGIKPDI-ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI-TYNTFVASYAADSLF 750 (819)
Q Consensus 673 ~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~ 750 (819)
-|...+.+..|+..|.+.+.. .|.+ ..|..=+-++.+..+++.+..--.+.++ +.|+.. ....++.++.....+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 455667788888888877764 5665 4455566677778888888877777766 566654 455666677777888
Q ss_pred HHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003449 751 VEALDVVRYMIK----QGCKPNQNTYNSIVDGYCKLNQRYEAITFVNN 794 (819)
Q Consensus 751 ~~A~~~~~~~~~----~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 794 (819)
++|+..+.++.. ..+.+-..++..|..+-.+.=...++.++.++
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 888888888743 23344556777776665554445555555444
No 329
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.29 E-value=0.79 Score=29.85 Aligned_cols=24 Identities=8% Similarity=0.232 Sum_probs=13.3
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhhh
Q 003449 774 SIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 774 ~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
.++.+|.+.|+.+.|+++++++.+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 345555555555555555555554
No 330
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.11 E-value=17 Score=31.78 Aligned_cols=70 Identities=16% Similarity=0.053 Sum_probs=44.2
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003449 184 GKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKM 256 (819)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 256 (819)
.+.++.++++.++..+.--.+. ....-..-...+.+.|+|.+|+.+|+.+.+.. |.......|+..|...
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYA 90 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHH
Confidence 4567888888888877665433 22333333445678888999999998887653 3444445555544443
No 331
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.97 E-value=1 Score=28.90 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 003449 770 NTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 770 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
.+++.++..|...|++++|..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666777777777777777666654
No 332
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.95 E-value=0.9 Score=26.63 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC
Q 003449 771 TYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 771 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
.|..++..+...|++++|...++++++..|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666777777777777776666553
No 333
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.90 E-value=6 Score=38.29 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=69.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH
Q 003449 203 GFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEG---CKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDS 279 (819)
Q Consensus 203 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~ 279 (819)
|......+...++..-....+.++++..+-++...- ..++. +-.++++.+.+. +.++++.++..=++.|+-||.
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllky--~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLKY--DPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHcc--ChHHHHHHHhCcchhccccch
Confidence 444455555555655556677888888877776431 11111 222334444443 467888888888888888999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 003449 280 YTFNTLISCCRRGSLHEEAAGVFEEMKLA 308 (819)
Q Consensus 280 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 308 (819)
++++.+++.+.+.+++.+|..+...|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999988888888887777655
No 334
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.59 E-value=54 Score=36.86 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=36.9
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhc--
Q 003449 426 IKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG-FIPERDTFNTLISAYSRC-- 502 (819)
Q Consensus 426 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~-- 502 (819)
...+.-.|+++.|++.+-+.. ....|.+.+...+.-|.-.+-..... ..+.... -.|...-+..||..|.+.
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~--~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNE--FNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHhhc--cCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 344556788888888876611 11233443333333332211111111 2222111 011114567777777753
Q ss_pred -CChHHHHHHHHHHHHC
Q 003449 503 -GSFDQAMSIYKRMLEA 518 (819)
Q Consensus 503 -g~~~~A~~~~~~~~~~ 518 (819)
.+..+|.++|-.+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 5777888888776654
No 335
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.06 E-value=9.4 Score=40.60 Aligned_cols=132 Identities=17% Similarity=0.118 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 003449 281 TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYA 360 (819)
Q Consensus 281 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 360 (819)
..+.++..+.+.|..++|+++- +|.... .....+.|+++.|.++..+. .+..-|..|..+..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHh
Confidence 4455566666666666665543 222211 12234667788887776664 25566888888888
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003449 361 RDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMK 440 (819)
Q Consensus 361 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 440 (819)
+.|++..|.+.|.+... |..|+-.+...|+-+....+-....+.|.. |...-+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHH
Confidence 88888888888776654 445666666777766655555555555421 222234556777777777
Q ss_pred HHHHH
Q 003449 441 VFDEI 445 (819)
Q Consensus 441 ~~~~~ 445 (819)
++.+-
T Consensus 743 lLi~t 747 (794)
T KOG0276|consen 743 LLIST 747 (794)
T ss_pred HHHhc
Confidence 76553
No 336
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=86.88 E-value=36 Score=34.06 Aligned_cols=118 Identities=13% Similarity=0.028 Sum_probs=63.6
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 003449 644 MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRS-------ENFARAEDVLREILAKGIKPDIISYNTVIFAYCR----N 712 (819)
Q Consensus 644 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 712 (819)
+..+|...++++.+.|..+.......+...|..- .+...|...+.++...+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 5566666666666655332212223333333322 12346777777777664 44444444444432 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------------ChHHHHHHHHHHHHcCCCCC
Q 003449 713 GRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADS---------------LFVEALDVVRYMIKQGCKPN 768 (819)
Q Consensus 713 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~g~~p~ 768 (819)
.+.++|..+|++..+.|. ......+. .+...| +...|..++......|....
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 271 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNA 271 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhH
Confidence 367788888888877664 33333444 455444 56667777777766554443
No 337
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.62 E-value=23 Score=31.52 Aligned_cols=56 Identities=14% Similarity=0.082 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003449 317 YNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMV 376 (819)
Q Consensus 317 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 376 (819)
+..++..+...|++-+|+++.+..... +...-..++.+-.+.++...-..+|+-..
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455556666677777777776664221 22222344555555555444444444333
No 338
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.55 E-value=12 Score=34.78 Aligned_cols=119 Identities=8% Similarity=-0.003 Sum_probs=78.1
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 003449 638 IYGRRQMVAKTNEILHFMNDSGFTPSLTT-YNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRM 715 (819)
Q Consensus 638 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 715 (819)
-|.....++.|+.-+.+.+.. .|+..+ |..-+-++.+..+++.+..--.+.++ +.|| +.....+..++.....+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 356667789999977777664 677755 55667778888999988887777776 4566 34445566777788889
Q ss_pred HHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003449 716 KEASRIFSEMRD----SGLVPDVITYNTFVASYAADSLFVEALDVVRYM 760 (819)
Q Consensus 716 ~~A~~~~~~~~~----~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 760 (819)
++|+..+++... +.+.+.......|..+--..=...+..++.++.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 999999998854 233344445555554433333334444444444
No 339
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=86.39 E-value=0.58 Score=52.53 Aligned_cols=15 Identities=53% Similarity=0.904 Sum_probs=7.8
Q ss_pred CCCCCCCCCCCCCCC
Q 003449 5 LSLPLLLPTPPPAKP 19 (819)
Q Consensus 5 ~~~~~~~~~p~~~~~ 19 (819)
.+||+--||||||||
T Consensus 2 a~lppg~pppppppp 16 (2365)
T COG5178 2 ASLPPGNPPPPPPPP 16 (2365)
T ss_pred CCCCCCCCcccccCC
Confidence 366764455554444
No 340
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.93 E-value=32 Score=32.65 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH---hHHHHHHHHHhCCCHHHHHHHHHHHH
Q 003449 293 SLHEEAAGVFEEMKLAGFSPDKV---TYNALLDVYGKCRRPKEAMQVLREMK 341 (819)
Q Consensus 293 g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 341 (819)
...++|..-|++.++..-..... +...++..+.+.|++++..+.+.++.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 35566666666666542222222 23334566667777777766666653
No 341
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.70 E-value=1.5 Score=26.50 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 736 TYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+|..++..|...|++++|...+++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666666666666666666666665
No 342
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=85.42 E-value=40 Score=33.21 Aligned_cols=97 Identities=19% Similarity=0.167 Sum_probs=57.5
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCC----H
Q 003449 349 IVTYNSLISAYARDGLLEEAMELKTQMVE----IGITPDVFTYTTLLS-GFEKAGKDESAMKVFEEMRSAGCKPN----I 419 (819)
Q Consensus 349 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~pd~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~----~ 419 (819)
...+-.....||+-|+-+.|++.+.+..+ .|.+.|+..+..=+. .|....-+.+-++..+.+.+.|...+ .
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 34566667788899998888887766543 477777765543332 23333334455555555666665543 2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 003449 420 CTFNALIKMHGNRGNFVEMMKVFDEINK 447 (819)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 447 (819)
.+|..+-.+ ...++.+|-.+|-+...
T Consensus 184 KvY~Gly~m--svR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGLYCM--SVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHH--HHHhHHHHHHHHHHHcc
Confidence 344444322 34577888887776654
No 343
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=84.81 E-value=51 Score=33.96 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003449 668 NTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA 745 (819)
Q Consensus 668 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 745 (819)
..|+.-|...|+..+|.+.++++--- +--....+.+++.+.-+.|+-..-+.++++.-..|+. |.+.+-.+|-
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI----T~nQMtkGf~ 585 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI----TTNQMTKGFE 585 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce----eHHHhhhhhh
Confidence 45666677888888888887765321 1123567777888888888777777777777666543 4445544443
No 344
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.76 E-value=78 Score=36.04 Aligned_cols=20 Identities=35% Similarity=0.351 Sum_probs=13.2
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 003449 180 ISMLGKEGKVSVAASLLHGL 199 (819)
Q Consensus 180 ~~~~~~~~~~~~a~~~~~~~ 199 (819)
|+-..+.|+++.|..+++..
T Consensus 367 I~hAlaA~d~~~aa~lle~~ 386 (894)
T COG2909 367 IDHALAAGDPEMAADLLEQL 386 (894)
T ss_pred HHHHHhCCCHHHHHHHHHhh
Confidence 34444677887777777654
No 345
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.75 E-value=8.7 Score=29.97 Aligned_cols=44 Identities=14% Similarity=0.147 Sum_probs=24.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003449 718 ASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMI 761 (819)
Q Consensus 718 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 761 (819)
+.+-++.+....+.|++.+..+.+.+|.+.+++.-|+++++...
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444444555555555555566666666666666665554
No 346
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.73 E-value=56 Score=34.40 Aligned_cols=162 Identities=12% Similarity=0.163 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003449 632 LNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR 711 (819)
Q Consensus 632 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 711 (819)
..+++..++.+-..+-...+..+|...| .+-..|..++.+|... ..++-..+|+++.+..+. |++.-..|+..|-+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk 144 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH
Confidence 3344444444444444445555555443 3334444555555444 334445555555544322 33333333333333
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCc
Q 003449 712 NGRMKEASRIFSEMRDSGLVPDV------ITYNTFVASYAADSLFVEALDVVRYMIKQ-GCKPNQNTYNSIVDGYCKLNQ 784 (819)
Q Consensus 712 ~g~~~~A~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~ 784 (819)
++.+.+..+|.++... +.|.. ..|..+.. .-..+.+.-..+..++.+. |..--...+..+..-|....+
T Consensus 145 -ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 145 -IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred -hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 4445555555554432 11100 12222221 1123344444444444422 222223333344444445555
Q ss_pred HHHHHHHHHHhhhcCCC
Q 003449 785 RYEAITFVNNLSKLDPH 801 (819)
Q Consensus 785 ~~~A~~~~~~~~~~~p~ 801 (819)
+++|+++++.+++.+-.
T Consensus 221 ~~eai~Ilk~il~~d~k 237 (711)
T COG1747 221 WTEAIRILKHILEHDEK 237 (711)
T ss_pred HHHHHHHHHHHhhhcch
Confidence 55555555555554433
No 347
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.51 E-value=78 Score=35.85 Aligned_cols=108 Identities=15% Similarity=0.189 Sum_probs=71.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHH-------H--------hcCChHHHHHHHHHHHHcCCCC
Q 003449 709 YCRNGRMKEASRIFSEMRDSG------LVPDVITYNTFVASY-------A--------ADSLFVEALDVVRYMIKQGCKP 767 (819)
Q Consensus 709 ~~~~g~~~~A~~~~~~~~~~g------~~p~~~~~~~l~~~~-------~--------~~g~~~~A~~~~~~~~~~g~~p 767 (819)
+...|++.+|.+.|..++-.- -.-+..-...++..+ . ..+..+.+.++........++|
T Consensus 1001 ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp 1080 (1202)
T KOG0292|consen 1001 LTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQP 1080 (1202)
T ss_pred hhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCc
Confidence 346799999999999887420 011111122222222 1 2234555555555555556777
Q ss_pred C--HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Q 003449 768 N--QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAK 816 (819)
Q Consensus 768 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~~ 816 (819)
- .-+....+..+.|.+++..|..+..++++++|.++.....+-+...+.
T Consensus 1081 ~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~e 1131 (1202)
T KOG0292|consen 1081 MHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAE 1131 (1202)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhh
Confidence 4 345667788899999999999999999999999988877776665543
No 348
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.37 E-value=2.5 Score=26.94 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 735 ITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 735 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.+++.++..|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888887764
No 349
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=84.35 E-value=3.3 Score=43.51 Aligned_cols=96 Identities=11% Similarity=0.088 Sum_probs=66.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHH
Q 003449 709 YCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEA 788 (819)
Q Consensus 709 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 788 (819)
+...|+...|.+.+..+......-..+..-.|+..+.+.|...+|-+++...+... ...+-++..++++|....+.+.|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 34567778888877776653222222345567777777777778888877777643 34566777888888888888888
Q ss_pred HHHHHHhhhcCCCCCHH
Q 003449 789 ITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 789 ~~~~~~~~~~~p~~~~~ 805 (819)
++.++.+.++.|++...
T Consensus 696 ~~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPEC 712 (886)
T ss_pred HHHHHHHHhcCCCChhh
Confidence 88888888888877544
No 350
>PRK10941 hypothetical protein; Provisional
Probab=84.10 E-value=11 Score=36.84 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHH-HHHHHHH
Q 003449 737 YNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELE-CKLSDRI 814 (819)
Q Consensus 737 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-~~l~~~l 814 (819)
..++-.+|.+.++++.|+.+.+.++. +.| ++.-+.--+..|.+.|.+..|..-++..++.-|+++.... ...+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 44666778889999999999999988 567 5666777888888999999999999999988888776643 3355554
Q ss_pred H
Q 003449 815 A 815 (819)
Q Consensus 815 ~ 815 (819)
.
T Consensus 262 ~ 262 (269)
T PRK10941 262 E 262 (269)
T ss_pred h
Confidence 4
No 351
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.94 E-value=13 Score=36.03 Aligned_cols=103 Identities=18% Similarity=0.235 Sum_probs=67.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH
Q 003449 589 IIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKG---FSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLT 665 (819)
Q Consensus 589 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 665 (819)
|.+........++......+++++++..+-++...- ..++.. ....+..+ -.-++++++.++..=++.|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 334445555666666666777888877776665320 011111 11222222 2345778888888777888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003449 666 TYNTLMYMYSRSENFARAEDVLREILAK 693 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 693 (819)
+++.+++.+.+.+++.+|..+.-.|+.+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888887777754
No 352
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.69 E-value=23 Score=33.17 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHHH
Q 003449 736 TYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELEC 808 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 808 (819)
.+.++..++...|++-++++.....+.. .| |...|..-+.+....=+.++|..-+.++++++|.-.++.-+
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~--~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRH--HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 4556667777888888888888888874 34 67777777777777778888888888888888877666433
No 353
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.01 E-value=7.2 Score=38.16 Aligned_cols=94 Identities=16% Similarity=0.083 Sum_probs=51.1
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003449 636 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM 715 (819)
Q Consensus 636 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 715 (819)
.+.|.+.|.+++|+..|....... +-+.+++..-..+|.+.+.+..|..--+.++..+ ..-...|..-+.+-...|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 455666777777777666655542 2266666666666666666666665555554421 11123344333444445555
Q ss_pred HHHHHHHHHHHHCCCCCC
Q 003449 716 KEASRIFSEMRDSGLVPD 733 (819)
Q Consensus 716 ~~A~~~~~~~~~~g~~p~ 733 (819)
.+|.+-++..++ ++|+
T Consensus 182 ~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHHhHHHHHh--hCcc
Confidence 556555555555 4554
No 354
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.84 E-value=64 Score=33.57 Aligned_cols=121 Identities=14% Similarity=0.079 Sum_probs=69.2
Q ss_pred HhCCCHHHHH-HHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003449 325 GKCRRPKEAM-QVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESA 403 (819)
Q Consensus 325 ~~~g~~~~A~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A 403 (819)
...|++-.|- +++.-+......|+.+..... .+...|+++.+...+...... +.....+..++++...+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 3456655553 344444433333444433333 345567888887777665543 333445667777777788888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 003449 404 MKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCN 449 (819)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 449 (819)
...-+-|+...+. +..+........-..|-++++.-.++++...+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 8877777765544 33332222223334566777777777776544
No 355
>PRK11619 lytic murein transglycosylase; Provisional
Probab=82.57 E-value=92 Score=35.19 Aligned_cols=205 Identities=9% Similarity=-0.038 Sum_probs=112.2
Q ss_pred ccCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 003449 571 NGREIDQMLALSEEIYSGI-IEPH--AVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAK 647 (819)
Q Consensus 571 ~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 647 (819)
...+.+.|..++....... .... ..+...++......+...++...++...... .+......-+..-.+.++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHH
Confidence 3556688888888764433 2221 2233344333333332556666666554332 233444444445557888888
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-H--H--HHHHH
Q 003449 648 TNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM-K--E--ASRIF 722 (819)
Q Consensus 648 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~--~--A~~~~ 722 (819)
+...+..|-... .-...-.-=+..++...|+.++|..+|+++... . ..|..|.. .+.|.. . . .-..
T Consensus 331 ~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~--~fYG~LAa--~~Lg~~~~~~~~~~~~~- 401 (644)
T PRK11619 331 LNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R--GFYPMVAA--QRLGEEYPLKIDKAPKP- 401 (644)
T ss_pred HHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C--CcHHHHHH--HHcCCCCCCCCCCCCch-
Confidence 888888875532 223333344666767789999999999887431 1 13333221 122221 0 0 0000
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 003449 723 SEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNL 795 (819)
Q Consensus 723 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 795 (819)
.. . +..+ .-..-+..+...|+..+|...+..+.+. .+......++....+.|.++.++....+.
T Consensus 402 ~~--~--~~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 402 DS--A--LTQG--PEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred hh--h--hccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 00 0 0001 1123344577888889998888888763 34455566777777888888887766544
No 356
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=82.56 E-value=40 Score=31.06 Aligned_cols=159 Identities=12% Similarity=0.092 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH--HHHHHH
Q 003449 594 AVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLT--TYNTLM 671 (819)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~ 671 (819)
+..++.++-.+...|+++.|.+.|+...+.+..-+-...|.-+.. .-.|++.-|.+-+...-+.. +.|++ .|-.+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLLAFYQDD-PNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 556666666677777777777777777765433333333322222 23466777766666555543 22322 122111
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHH
Q 003449 672 YMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-------VITYNTFVASY 744 (819)
Q Consensus 672 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~~~~l~~~~ 744 (819)
...=+..+|..-+.+-.+ ..|..-|...+..|.- |++. ...+++++.+. -..+ ..+|..++.-+
T Consensus 177 ---E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHH
Confidence 122345555544333222 1233344333322221 2211 12223333321 1111 24778888888
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 003449 745 AADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 745 ~~~g~~~~A~~~~~~~~~~ 763 (819)
...|+.++|..+++-++..
T Consensus 248 l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 248 LSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hccccHHHHHHHHHHHHHH
Confidence 8889999999998888763
No 357
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=82.56 E-value=25 Score=29.05 Aligned_cols=62 Identities=6% Similarity=0.070 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 003449 752 EALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRI 814 (819)
Q Consensus 752 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l 814 (819)
|..+-++.+...++-|++.+....+++|.+.+|+--|.++++-+..+-+.... .|..+++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~-~Y~y~v~el 128 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQ-VYPYYVKEL 128 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHH-HHHHHHHHH
Confidence 34455566666667777777777777777777777777777776654333322 555555544
No 358
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.10 E-value=9.3 Score=30.16 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=23.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 718 ASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 718 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
..+-+..+....+.|++.+..+.+.+|.+.+++.-|+++++....
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444455556666666666666666666666666665553
No 359
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.77 E-value=1.1e+02 Score=35.49 Aligned_cols=27 Identities=11% Similarity=0.482 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003449 457 WNTLLAVFGQNGMDSEVSGVFKEMKRA 483 (819)
Q Consensus 457 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 483 (819)
|..|+..|...|+.++|+++|.+..+.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 667777788888888888888777653
No 360
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.61 E-value=14 Score=33.64 Aligned_cols=71 Identities=13% Similarity=0.137 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 003449 472 EVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA---GVTPDLSTYNAVLAALARGGMWEQS 543 (819)
Q Consensus 472 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A 543 (819)
+|...|-.+...+..-+......|+..|. ..+.+++..++.+..+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444433333333333333333 34455555555554442 2234555555555555555555544
No 361
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.04 E-value=2.2 Score=25.41 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 737 YNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 737 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+..++.++.+.|++++|.+.++++++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455666666666666666666665
No 362
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=81.01 E-value=25 Score=29.62 Aligned_cols=66 Identities=12% Similarity=0.092 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003449 662 PSLTTYNTLMYMYSRSEN---FARAEDVLREILA-KGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 662 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 727 (819)
++..+--.+.+++.++.+ .++.+.+++++.+ ....-.......|.-++.+.|++++++++.+.+.+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 333343444444444432 3334445555543 11111123333344445555555555555555444
No 363
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.47 E-value=54 Score=31.21 Aligned_cols=208 Identities=13% Similarity=0.085 Sum_probs=118.7
Q ss_pred CCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-----
Q 003449 519 GVTPDLSTYNAVLAA-LARGGMWEQSEKIFAEMKGGRCKP---NELTYSSLLHAYANGREIDQMLALSEEIYSGI----- 589 (819)
Q Consensus 519 ~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 589 (819)
+..||+..-|..-.. -.+..+.++|+.-|.+..+..-.- .-.+...++..+.+.+++++....|.+++..-
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 345555544433221 123457889999998887643222 22344556777888999999988888876421
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhCCC----
Q 003449 590 IEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKG-FSPDI----PTLNAMISIYGRRQMVAKTNEILHFMNDSGF---- 660 (819)
Q Consensus 590 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---- 660 (819)
-.-+....+.+++......+.+--..+|+.-++.- -..+. .+-..|...|...+.+.+..++++++.....
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 12234455666666666666555555555433210 00111 2335567777777888888888877765411
Q ss_pred CCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHH
Q 003449 661 TPS-------LTTYNTLMYMYSRSENFARAEDVLREILAK-GIKPDIISYNTVI----FAYCRNGRMKEASRIFSEMR 726 (819)
Q Consensus 661 ~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~ 726 (819)
..| ..+|..-+.+|...++-.+-..++++.+.. ..-|.+.....+- .+..+.|++++|-.-|-++.
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 111 134566677777788887878888876632 1234444443322 23446677877765444443
No 364
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=80.19 E-value=77 Score=32.75 Aligned_cols=55 Identities=15% Similarity=0.095 Sum_probs=25.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHH
Q 003449 707 FAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA-ADSLFVEALDVVRYMI 761 (819)
Q Consensus 707 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 761 (819)
..+.+.|-+..|.++.+-+......-|+.....+++-|+ +.++++--+++++...
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 344455555555555555555332223333333343332 4445555555555443
No 365
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.45 E-value=2.7 Score=23.63 Aligned_cols=21 Identities=10% Similarity=0.042 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCcHHHHHHHHH
Q 003449 773 NSIVDGYCKLNQRYEAITFVN 793 (819)
Q Consensus 773 ~~l~~~~~~~g~~~~A~~~~~ 793 (819)
..++..+...|+.++|...++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555555555555555543
No 366
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=79.22 E-value=70 Score=35.67 Aligned_cols=24 Identities=8% Similarity=0.213 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003449 208 VYAYTSLITTYASNGRYREAVMVFK 232 (819)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~ 232 (819)
..-|. .+..+.-.|+++.|..++.
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~ 172 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLR 172 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHH
Confidence 45554 4555666666666666663
No 367
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=78.62 E-value=94 Score=32.85 Aligned_cols=100 Identities=6% Similarity=0.070 Sum_probs=67.2
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003449 696 KPDIISY-NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASY--AADSLFVEALDVVRYMIKQGCKPNQNTY 772 (819)
Q Consensus 696 ~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 772 (819)
.++..++ +.++..+.+.|-+++|...+..+... ..|+...|..++..- ....+..-+..+|+.|... +..|+..|
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw 533 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLW 533 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHH
Confidence 4454443 45667778888899999999998874 344555666665432 2223477888888888743 23677788
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhhh
Q 003449 773 NSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 773 ~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
......-...|..+.+-.++.++.+
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 7777766678887777666666543
No 368
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=78.53 E-value=1.2e+02 Score=33.87 Aligned_cols=122 Identities=11% Similarity=0.128 Sum_probs=67.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 003449 602 LVYSKSDLLMDTERAFLELKKKGFSPDI--PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSEN 679 (819)
Q Consensus 602 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 679 (819)
-++..-|+.++|..+..++.... .|-. .-...++.+|+-.|+.....+++.-.... ...|..-+..+.-++.-..+
T Consensus 509 iaL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 509 IALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred HHHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecC
Confidence 34445566677777777776432 1111 11234455666677666666666554442 24444555555556666677
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHH
Q 003449 680 FARAEDVLREILAKGIKPDIISYNTVI--FAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 680 ~~~A~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~ 727 (819)
.+....+.+-+.+. ..|.+..-.+++ -+|+-.| ..+|..+++-|..
T Consensus 587 p~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 587 PEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred hhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 77777777666553 444443333332 3333333 4777788777765
No 369
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=78.02 E-value=47 Score=31.22 Aligned_cols=25 Identities=32% Similarity=0.236 Sum_probs=13.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 003449 704 TVIFAYCRNGRMKEASRIFSEMRDS 728 (819)
Q Consensus 704 ~l~~~~~~~g~~~~A~~~~~~~~~~ 728 (819)
.++....+.|+.++|.++|.++...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3444555556666666666655554
No 370
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.71 E-value=5 Score=26.18 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=12.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Q 003449 320 LLDVYGKCRRPKEAMQVLREMKI 342 (819)
Q Consensus 320 l~~~~~~~g~~~~A~~~~~~~~~ 342 (819)
|..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555543
No 371
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.68 E-value=46 Score=28.76 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=36.7
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003449 185 KEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEG 238 (819)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 238 (819)
..++.++++.+++.+.--.+. ....-..-...+...|+|.+|..+|+.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 478888888888887655433 22222233445678889999999999988764
No 372
>PRK09687 putative lyase; Provisional
Probab=77.35 E-value=79 Score=31.30 Aligned_cols=121 Identities=11% Similarity=0.042 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003449 418 NICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNG-MDSEVSGVFKEMKRAGFIPERDTFNTLI 496 (819)
Q Consensus 418 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 496 (819)
+..+-...+.++.+.++ .++...+-.+.+ .++...-...+.++.+.+ ....+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33444444444444444 334444444433 223333333333333332 12234444433332 22444445555
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003449 497 SAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKG 552 (819)
Q Consensus 497 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 552 (819)
.++.+.|+ ..|...+-...+.+ + .....+.++...|.. +|...+..+.+
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 55555555 33444444444331 1 122344455555552 45555555554
No 373
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=76.92 E-value=4.9 Score=36.99 Aligned_cols=56 Identities=14% Similarity=0.060 Sum_probs=29.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCC
Q 003449 745 AADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 745 ~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
.+.++.+.|.+++.++.+ +.| ....|..++..--+.|+++.|.+.+++.++++|++
T Consensus 6 ~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344555555555555554 333 44455555555555555555555555555555544
No 374
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=76.17 E-value=8.3 Score=23.87 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHH--HhhhcCCC
Q 003449 771 TYNSIVDGYCKLNQRYEAITFVN--NLSKLDPH 801 (819)
Q Consensus 771 ~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~ 801 (819)
.+..++..+...|++++|+++++ -+..+++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 34556666667777777777733 55555543
No 375
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=76.13 E-value=77 Score=30.69 Aligned_cols=160 Identities=13% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHhhCC--------CCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003449 651 ILHFMNDSG--------FTPSLTTYNTLMYMY-SRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRI 721 (819)
Q Consensus 651 ~~~~~~~~~--------~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 721 (819)
+++-+.+.| +..|...+|+++.-- .+...++++++-.++.- |-.-....+..++..|++.++.+.+.++
T Consensus 60 lYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ng~~~ 137 (412)
T COG5187 60 LYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQNGFEW 137 (412)
T ss_pred HHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred HHHHHHC----CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003449 722 FSEMRDS----GLVPDVI-TYNTFVASYAADSLFVEALDVVRYMIKQGCKP--NQNTYNSIVDGYCKLNQRYEAITFVNN 794 (819)
Q Consensus 722 ~~~~~~~----g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 794 (819)
..+..+. |.+.|.. +-..++-.|....-.++-++..+.|+++|-.- ....=..-+-.+....++.+|..++..
T Consensus 138 ~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d 217 (412)
T COG5187 138 MRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSD 217 (412)
T ss_pred HHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred hhhcCCCCCHHHHHHHHH
Q 003449 795 LSKLDPHVTKELECKLSD 812 (819)
Q Consensus 795 ~~~~~p~~~~~~~~~l~~ 812 (819)
.+..-....-.-|...+.
T Consensus 218 ~l~tF~S~El~sY~~~vr 235 (412)
T COG5187 218 ILPTFESSELISYSRAVR 235 (412)
T ss_pred HhccccccccccHHHHHH
No 376
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.53 E-value=25 Score=27.74 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=26.1
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003449 323 VYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIG 379 (819)
Q Consensus 323 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 379 (819)
.+...|++++|..+.+.+ +.||...|-.|.. .+.|..+++..-+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 345556666666555554 4555555554432 24455555544444554443
No 377
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.35 E-value=89 Score=30.93 Aligned_cols=53 Identities=15% Similarity=0.227 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003449 204 FDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMG 257 (819)
Q Consensus 204 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 257 (819)
+......+..++.+|+...-.++|+..+++..+.|+- +...|..=++.+.+..
T Consensus 295 ~~~~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i-~l~~yLr~VR~lsReQ 347 (365)
T KOG2391|consen 295 IECTAPLYKQILECYALDLAIEDAIYSLGKSLRDGVI-DLDQYLRHVRLLSREQ 347 (365)
T ss_pred hhccchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCee-eHHHHHHHHHHHHHHH
Confidence 3344567888888998888888888888888888754 6666666666666544
No 378
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=75.29 E-value=65 Score=31.95 Aligned_cols=124 Identities=12% Similarity=0.105 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003449 680 FARAEDVLREILAKGIKPDIISYNTVIFAYC------RNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEA 753 (819)
Q Consensus 680 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 753 (819)
++++..++++....+ .|.+......|.++- ..-+|.....+|+-+.. +.|++++-.+-..+..+..-.+.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHHHHHhhhHHhH
Confidence 445666666666554 255555554443332 12346666667776666 455554333333344555556777
Q ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHH
Q 003449 754 LDVVRYMIKQG-CKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 754 ~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
+.+++.+.+.+ +.--...+..-++.+.+.|+.++|...|++++++.++..+..
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~ 402 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERA 402 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence 77777776542 111222333456677788888888888888888877775554
No 379
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.34 E-value=13 Score=39.52 Aligned_cols=127 Identities=15% Similarity=0.094 Sum_probs=85.6
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003449 648 TNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 648 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 727 (819)
|-.++..|.. ...|--.++|...-.....|+...|.+.+..+......-.-+....|+..+.+.|...+|-.++.+.+.
T Consensus 592 ~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~ 670 (886)
T KOG4507|consen 592 GSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALA 670 (886)
T ss_pred HHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHh
Confidence 3444444443 223433344443434456789999999988877542222344556677777888888899999988887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 003449 728 SGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDG 778 (819)
Q Consensus 728 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~ 778 (819)
.. ...+.++..++.++....+++.|++.++.+.+. .| +.++-+.|...
T Consensus 671 ~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~--~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 671 IN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKL--TTKCPECENSLKLI 719 (886)
T ss_pred hc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc--CCCChhhHHHHHHH
Confidence 54 345668888999999999999999999999874 45 45555555443
No 380
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.16 E-value=5 Score=22.53 Aligned_cols=21 Identities=19% Similarity=0.053 Sum_probs=10.9
Q ss_pred HHHHHHHHhcCChHHHHHHHH
Q 003449 738 NTFVASYAADSLFVEALDVVR 758 (819)
Q Consensus 738 ~~l~~~~~~~g~~~~A~~~~~ 758 (819)
..++..+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555555555555555443
No 381
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.60 E-value=13 Score=27.90 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=28.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003449 745 AADSLFVEALDVVRYMIKQGCKP--NQNTYNSIVDGYCKLNQRYEAITFVNN 794 (819)
Q Consensus 745 ~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 794 (819)
+...+.++|+..++.+++.-..+ -..++..++.+|+..|++.+++++.-.
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666542222 124455666666667777666665544
No 382
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=73.57 E-value=4.9 Score=41.52 Aligned_cols=102 Identities=18% Similarity=0.121 Sum_probs=51.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCC
Q 003449 672 YMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI-TYNTFVASYAADSL 749 (819)
Q Consensus 672 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~ 749 (819)
..+.+.++++.|..++.++++. .|| +..|..=..++.+.+++..|+.=+.++++. .|+.. .|..-+.++.+.++
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHHH
Confidence 3444555666666666666653 343 223333335555666666666655555552 23322 33333444455555
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003449 750 FVEALDVVRYMIKQGCKPNQNTYNSIVDGY 779 (819)
Q Consensus 750 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 779 (819)
+.+|...++.... +.|+..-....+.-|
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 5666666655555 455544444444433
No 383
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=73.47 E-value=11 Score=37.28 Aligned_cols=6 Identities=67% Similarity=0.811 Sum_probs=2.2
Q ss_pred CCCCCC
Q 003449 4 NLSLPL 9 (819)
Q Consensus 4 ~~~~~~ 9 (819)
++|+|+
T Consensus 481 pls~PP 486 (563)
T KOG1785|consen 481 PLSLPP 486 (563)
T ss_pred CCCCCC
Confidence 333333
No 384
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.49 E-value=53 Score=30.40 Aligned_cols=123 Identities=11% Similarity=0.111 Sum_probs=76.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 003449 667 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD----VITYNTFVA 742 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~ 742 (819)
.+..+..+.+.+.+++|+...++-++.+ +.|...-..++..||-.|++++|..-++-.-+ +.|+ ...|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHHHHHHHH
Confidence 4455667788899999999999888764 33666777788999999999999998887766 3433 345666554
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHH-H-HhcC-cHHHHHHHHHHhhhcCCCC
Q 003449 743 SYAADSLFVEALDVVRYMIKQGCKPN-----QNTYNSIVDG-Y-CKLN-QRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 743 ~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~-~-~~~g-~~~~A~~~~~~~~~~~p~~ 802 (819)
+- ..-++..+-+..|. ...|...+.. . +..+ .-+.+..+-+.+.+..|.+
T Consensus 81 ~e----------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 81 CE----------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred HH----------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 31 11122233333442 2334433222 2 2333 4444555666677777765
No 385
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.86 E-value=94 Score=29.23 Aligned_cols=183 Identities=13% Similarity=0.271 Sum_probs=85.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCH-HHHHHHHHHHHccC
Q 003449 499 YSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMK----GGRCKPNE-LTYSSLLHAYANGR 573 (819)
Q Consensus 499 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~~~~~~~-~~~~~l~~~~~~~~ 573 (819)
+.-.+++++|.++|.+... .|.-.++|..|-..|.+.- +.|-+.|. .+|.....+| +..
T Consensus 24 fgg~~k~eeAadl~~~Aan---------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~ 87 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAAN---------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKV 87 (288)
T ss_pred cCCCcchHHHHHHHHHHHH---------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hcc
Confidence 3344577777777766443 2333344444444443332 12222232 2344444444 334
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHH
Q 003449 574 EIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRR-QMVAKTNEIL 652 (819)
Q Consensus 574 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~ 652 (819)
++++|...++..+ ..|...|++..|-.....+- ..|... .++++|+..+
T Consensus 88 ~~~eAv~cL~~ai---------------eIyt~~Grf~~aAk~~~~ia---------------EiyEsdl~d~ekaI~~Y 137 (288)
T KOG1586|consen 88 DPEEAVNCLEKAI---------------EIYTDMGRFTMAAKHHIEIA---------------EIYESDLQDFEKAIAHY 137 (288)
T ss_pred ChHHHHHHHHHHH---------------HHHHhhhHHHHHHhhhhhHH---------------HHHhhhHHHHHHHHHHH
Confidence 6666666655443 34555666655544333322 222221 3344444444
Q ss_pred HHHhhC--CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHh--cCCHHHHHHH
Q 003449 653 HFMNDS--GFT---PSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTV----IFAYCR--NGRMKEASRI 721 (819)
Q Consensus 653 ~~~~~~--~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l----~~~~~~--~g~~~~A~~~ 721 (819)
+..-+. |-. .....+.-+...-...+++.+|+++|+++.......+..-|..- -.++|+ ..+.-.+...
T Consensus 138 E~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~A 217 (288)
T KOG1586|consen 138 EQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRA 217 (288)
T ss_pred HHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHH
Confidence 444332 101 11122333334446678899999999988865444332222211 112222 2444455555
Q ss_pred HHHHHH
Q 003449 722 FSEMRD 727 (819)
Q Consensus 722 ~~~~~~ 727 (819)
+++..+
T Consensus 218 Leky~~ 223 (288)
T KOG1586|consen 218 LEKYQE 223 (288)
T ss_pred HHHHHh
Confidence 666655
No 386
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=70.82 E-value=80 Score=29.88 Aligned_cols=113 Identities=12% Similarity=0.095 Sum_probs=63.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003449 673 MYSRSENFARAEDVLREILAKGIK-PDI--ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSL 749 (819)
Q Consensus 673 ~~~~~g~~~~A~~~~~~~~~~~~~-p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 749 (819)
-....|+++.|+++.+.+++.|.. |+. .++-+++ .++..+......+.|-..++.....+...-.....
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v--------aeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dm 163 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV--------AEEVANAALKAASAGESVEPYFLRVFLDLTTEWDM 163 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHH--------HHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCC
Confidence 346788889999988888887653 221 1222221 14555555555555544444332222111111111
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---------HhcCcHHHHHHHHHHhhhcCCCCCHHHH
Q 003449 750 FVEALDVVRYMIKQGCKPNQNTYNSIVDGY---------CKLNQRYEAITFVNNLSKLDPHVTKELE 807 (819)
Q Consensus 750 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~---------~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 807 (819)
.|+. ....|..++..+ ...++...|..+++++.+++|+....+.
T Consensus 164 pd~v--------------rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~ 216 (230)
T PHA02537 164 PDEV--------------RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKD 216 (230)
T ss_pred ChHH--------------HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHH
Confidence 1111 134455566655 2456888999999999999998877653
No 387
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=70.71 E-value=8.8 Score=21.92 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 736 TYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.|..++..+...|++++|...++..++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 445566666666666666666666654
No 388
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=70.52 E-value=16 Score=25.10 Aligned_cols=29 Identities=7% Similarity=0.079 Sum_probs=17.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003449 739 TFVASYAADSLFVEALDVVRYMIKQGCKPNQ 769 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 769 (819)
.++-++.+.|++++|.++++.+++ +.|+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N 34 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDN 34 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCc
Confidence 445566677777777777777766 45643
No 389
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=70.46 E-value=1.5 Score=38.23 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=23.0
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHH
Q 003449 289 CRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLR 338 (819)
Q Consensus 289 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 338 (819)
+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 17 FEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444444455555544333344455555555555554444444444
No 390
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=69.85 E-value=34 Score=33.82 Aligned_cols=95 Identities=19% Similarity=0.175 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 003449 666 TYNTLMYMYSRSENFARAEDVLREILAKGI-KP--DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI-TYNTFV 741 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~ 741 (819)
.|.-=++-|.+.+++..|...|.+-++... .| +.+.|+.-..+....|++..|+.=....+. +.|+.. .|..-+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhh
Confidence 455566778888888889988888875532 22 356677766677777888888888877776 566554 666667
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 003449 742 ASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 742 ~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.++....++++|..+.+...+
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 777888888888888887754
No 391
>PHA02940 hypothetical protein; Provisional
Probab=69.72 E-value=98 Score=28.97 Aligned_cols=75 Identities=8% Similarity=-0.058 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 003449 736 TYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIA 815 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~ 815 (819)
+...++.-|.+.++.++-..+.+++.+. +.| ..+.--..-+++.+.+-++.+++-+-+-+..+|+.|-..|.
T Consensus 144 tv~~la~~yvq~vk~d~r~~~a~~l~ke-Ls~-------~~d~~enepdle~d~keie~~lE~~~dl~rGtY~vL~~ald 215 (315)
T PHA02940 144 TVILLAGRYVQDVKKDDRRTIANKLSKE-LSW-------TIDYQENEPDLESDFKEIEEELEEKDDLSRGTYKVLKRALD 215 (315)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHhh-hhH-------HHHHHhcCcchhhhHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence 4445666677777777766666666542 111 11111233458888888899999888888889999998888
Q ss_pred hhc
Q 003449 816 KKW 818 (819)
Q Consensus 816 ~~~ 818 (819)
++|
T Consensus 216 ~m~ 218 (315)
T PHA02940 216 LMK 218 (315)
T ss_pred HHH
Confidence 877
No 392
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=69.70 E-value=11 Score=26.91 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 716 KEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 716 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
++..++++.+.. ...|......++.+|...|++++|.++++.+.+
T Consensus 7 ~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444444433 222344444555566666666666666665543
No 393
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=69.17 E-value=1.2 Score=38.75 Aligned_cols=83 Identities=14% Similarity=0.224 Sum_probs=42.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003449 635 MISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR 714 (819)
Q Consensus 635 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 714 (819)
++..+.+.+.++....+++.+...+...+....+.++..|++.+..++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34445555666666666666665443444555666666666665555555555511 11122234445555555
Q ss_pred HHHHHHHHHH
Q 003449 715 MKEASRIFSE 724 (819)
Q Consensus 715 ~~~A~~~~~~ 724 (819)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 394
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.77 E-value=1.2e+02 Score=29.51 Aligned_cols=87 Identities=11% Similarity=0.038 Sum_probs=51.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HH
Q 003449 671 MYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS-----YA 745 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-----~~ 745 (819)
|.+++..+++.+++...-+.-+.--+.-..+...-|-.|.+.|....+.++-..-...--.-+...|..++.. +.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 6777888888887776555443211122344445555677888877777777776653111112235544444 44
Q ss_pred hcCChHHHHHHH
Q 003449 746 ADSLFVEALDVV 757 (819)
Q Consensus 746 ~~g~~~~A~~~~ 757 (819)
-.|.+++|++++
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 568888887776
No 395
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.46 E-value=18 Score=27.08 Aligned_cols=14 Identities=21% Similarity=0.174 Sum_probs=6.0
Q ss_pred CHHHHHHHHHHHHH
Q 003449 679 NFARAEDVLREILA 692 (819)
Q Consensus 679 ~~~~A~~~~~~~~~ 692 (819)
+.++|+..|+.+++
T Consensus 21 ~~~~Al~~W~~aL~ 34 (80)
T PF10579_consen 21 ETQQALQKWRKALE 34 (80)
T ss_pred hHHHHHHHHHHHHh
Confidence 34444444444443
No 396
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=68.07 E-value=1.3e+02 Score=29.59 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHccCCHHHH
Q 003449 419 ICTFNALIKMHGNRGNFVEM 438 (819)
Q Consensus 419 ~~~~~~l~~~~~~~g~~~~A 438 (819)
..+|.-|+.++|..|+.+-.
T Consensus 321 lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHhhhHHHHHHhcCChHHHH
Confidence 34566677777777765543
No 397
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.71 E-value=15 Score=33.96 Aligned_cols=44 Identities=18% Similarity=0.338 Sum_probs=26.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCC
Q 003449 755 DVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 755 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 800 (819)
+..++..+ ..|++.++..++..+...|+.++|..+.+++...-|
T Consensus 132 ~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 132 EWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33344444 456666666666666666666666666666666666
No 398
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.49 E-value=64 Score=25.60 Aligned_cols=51 Identities=16% Similarity=0.297 Sum_probs=37.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003449 358 AYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAG 414 (819)
Q Consensus 358 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 414 (819)
.+...|+|++|..+.+.+ ..||...|..|.. .+.|..+.+..-+..+..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 466788999998887765 4788888776644 36777777777777777765
No 399
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.06 E-value=48 Score=31.22 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcC
Q 003449 771 TYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAKKWT 819 (819)
Q Consensus 771 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~~~~~ 819 (819)
.+.+...++...|++.++++....++...|.+-...|.+--...+ -||
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa-~Wn 279 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAA-VWN 279 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-hcC
Confidence 455667777889999999999999999999997777766544443 554
No 400
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=65.69 E-value=1.6e+02 Score=29.91 Aligned_cols=119 Identities=8% Similarity=0.032 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHH
Q 003449 645 VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR---NGRMKEASRI 721 (819)
Q Consensus 645 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~ 721 (819)
.+.-+.+++++.+.+ +.+...+..++..+.+..+.++..+-|++++... .-+...|...++.... .-.+++...+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 345567778877763 4566667778888888888888888888888763 2257777777765543 2246677766
Q ss_pred HHHHHHC------CC------CCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003449 722 FSEMRDS------GL------VPDV-----ITYNTFVASYAADSLFVEALDVVRYMIKQGC 765 (819)
Q Consensus 722 ~~~~~~~------g~------~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 765 (819)
|.+.+.. +. .++. ..+..+...+..+|-.+.|+.+++.+++.++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 6666541 11 0111 1334444455677888888888888887654
No 401
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=65.49 E-value=1.1e+02 Score=27.81 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=30.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCC--------------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003449 635 MISIYGRRQMVAKTNEILHFMNDSGF--------------TPSLTTYNTLMYMYSRSENFARAEDVLR 688 (819)
Q Consensus 635 l~~~~~~~~~~~~A~~~~~~~~~~~~--------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 688 (819)
++..|.+..++.++.++++.|.+..+ .+.-...|.....|.+.|.++.|..+++
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 34455666667777777766665421 1222334555566666777777766665
No 402
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=65.25 E-value=1.2e+02 Score=28.42 Aligned_cols=62 Identities=24% Similarity=0.325 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHH--HHHHHHHhcCCHHHHHHHHHHH
Q 003449 662 PSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKP---DIISYN--TVIFAYCRNGRMKEASRIFSEM 725 (819)
Q Consensus 662 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~--~l~~~~~~~g~~~~A~~~~~~~ 725 (819)
+...-+|.|+--|.-...+.+|.+.|..-. |+.+ |..++. .-|......|++++|.+....+
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHh
Confidence 344444555444444444444444443322 2222 222221 2234445555555555555443
No 403
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.21 E-value=2.1e+02 Score=31.04 Aligned_cols=94 Identities=13% Similarity=0.076 Sum_probs=49.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhc
Q 003449 707 FAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA-ADSLFVEALDVVRYMIK---QGCKPNQNTYNSIVDGYCKL 782 (819)
Q Consensus 707 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~---~g~~p~~~~~~~l~~~~~~~ 782 (819)
..+.+.|-+..|.++.+-+......-|+.....++..|+ ++.+|+--+++++.... ...-||...-..|+..|...
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~ 429 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRK 429 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhc
Confidence 334456667777777666666333334555555555554 44556555555554432 12345544444555555544
Q ss_pred Cc---HHHHHHHHHHhhhcCC
Q 003449 783 NQ---RYEAITFVNNLSKLDP 800 (819)
Q Consensus 783 g~---~~~A~~~~~~~~~~~p 800 (819)
.. .+.|...+.+++..-|
T Consensus 430 ~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 430 NEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred CChhhHHHHHHHHHHHHHhCc
Confidence 43 4555666666555544
No 404
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=64.93 E-value=24 Score=27.83 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=11.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 003449 740 FVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 740 l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
++......|++++|+..++++++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33344444555555555555543
No 405
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.92 E-value=51 Score=27.35 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=26.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 719 SRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 719 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.+-+..+....+.|++.+....+.++.+-+++..|+++++-...
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444445555666666666666666666666666666666653
No 406
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=63.95 E-value=2e+02 Score=30.52 Aligned_cols=93 Identities=12% Similarity=0.102 Sum_probs=62.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003449 633 NAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYS--RSENFARAEDVLREILAKGIKPDIISYNTVIFAYC 710 (819)
Q Consensus 633 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 710 (819)
+.++..+-+.|-..+|..++..+.... +++...|..++..-. .+-++..+.++++.+... +..|+..|...+..-.
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw~~y~~~e~ 541 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLWMDYMKEEL 541 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHHHHHHHhhc
Confidence 556666667777788888888777653 556666766665421 222477788888888743 2257777777776666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 003449 711 RNGRMKEASRIFSEMRD 727 (819)
Q Consensus 711 ~~g~~~~A~~~~~~~~~ 727 (819)
..|..+.+-.++.++.+
T Consensus 542 ~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 542 PLGRPENCGQIYWRAMK 558 (568)
T ss_pred cCCCcccccHHHHHHHH
Confidence 78888887777777665
No 407
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.38 E-value=1.5e+02 Score=28.78 Aligned_cols=121 Identities=11% Similarity=0.045 Sum_probs=58.5
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHH----HHcCCCCCHHHHHHHH
Q 003449 182 MLGKEGKVSVAASLLHGLHKDGFDIDVY-------AYTSLITTYASNGRYREAVMVFKKM----EEEGCKPTLITYNVIL 250 (819)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~ll 250 (819)
-..+.+++++|...+.++...|...+.. +...+...|.+.|++..-.+..... ....-+..+....+++
T Consensus 12 ~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLi 91 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLI 91 (421)
T ss_pred HhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHH
Confidence 3345666677777777666665544433 3344566677777665444443322 2211122333445555
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHcCCCHHHHHHHH
Q 003449 251 NVYGKMGMPWNKIMALVEGMKSAGVKPDS-----YTFNTLISCCRRGSLHEEAAGVF 302 (819)
Q Consensus 251 ~~~~~~g~~~~~a~~~~~~~~~~g~~p~~-----~~~~~ll~~~~~~g~~~~A~~~~ 302 (819)
.-+......++.-..+.....++...-.. ..-..++..+.+.|.+.+|..+.
T Consensus 92 ekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalI 148 (421)
T COG5159 92 EKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALI 148 (421)
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 55544443455555555444433221111 11123445556666666665543
No 408
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.34 E-value=1.6e+02 Score=29.37 Aligned_cols=96 Identities=15% Similarity=0.014 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 003449 629 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGF-TP--SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNT 704 (819)
Q Consensus 629 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 704 (819)
...|--=.+-|.+..++..|...|.+.+.... .| +.+.|+.-..+-...|++..|+.=-...... +|+ ...|.-
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R 158 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIR 158 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--Ccchhhhhhh
Confidence 34566667778888999999999988776532 23 3456777777777788898888877777764 454 455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 003449 705 VIFAYCRNGRMKEASRIFSEMR 726 (819)
Q Consensus 705 l~~~~~~~g~~~~A~~~~~~~~ 726 (819)
=..++....++++|..+.++..
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhh
Confidence 5566777778888888777654
No 409
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=62.58 E-value=92 Score=32.45 Aligned_cols=61 Identities=13% Similarity=0.224 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--C----CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 702 YNTVIFAYCRNGRMKEASRIFSEMRDS--G----LVP-DVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 702 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--g----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
...|++.++-.|++..|+++++.+.-. + +.+ ...++..++-+|.-.+++.+|++.+...+-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777778888888877665321 1 111 112566777777777888888877777763
No 410
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=62.57 E-value=2.1e+02 Score=30.24 Aligned_cols=38 Identities=11% Similarity=-0.056 Sum_probs=25.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003449 533 ALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYAN 571 (819)
Q Consensus 533 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 571 (819)
.|...|+.-.|.+.|.+.... +..++..|..+..+|..
T Consensus 344 ~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 344 LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 455677777777777776543 34566777777777653
No 411
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=61.48 E-value=1.7e+02 Score=28.75 Aligned_cols=115 Identities=13% Similarity=0.129 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHHc-C-CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003449 330 PKEAMQVLREMKI-NGCLPSIVTYNSLISAYARD-G-LLEEAMELKTQMVE-IGITPDVFTYTTLLSGFEKAGKDESAMK 405 (819)
Q Consensus 330 ~~~A~~~~~~~~~-~g~~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~-~g~~pd~~~~~~l~~~~~~~g~~~~A~~ 405 (819)
+.+|+++|+.... ..+-.|......+++..... + ....-.++.+-+.. .|-.++..+...+++.+++.+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455555552211 11333444555555554441 1 12222222222222 2334555566667777777777777777
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003449 406 VFEEMRSA-GCKPNICTFNALIKMHGNRGNFVEMMKVFDE 444 (819)
Q Consensus 406 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 444 (819)
+++..... +...|...|..+|+...+.|+..-..++.++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 77765544 4455666777777777777776655555543
No 412
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=61.38 E-value=1.7e+02 Score=28.65 Aligned_cols=103 Identities=16% Similarity=0.115 Sum_probs=49.5
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhcCCHH
Q 003449 326 KCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMV----EIGITPDVFTYTTLLSGFEKAGKDE 401 (819)
Q Consensus 326 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~pd~~~~~~l~~~~~~~g~~~ 401 (819)
+++++++|.+++..- ...+.+.|+...|-++..-++ +.+.+.|......++..+...+.-+
T Consensus 2 ~~kky~eAidLL~~G---------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG---------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE 66 (260)
T ss_dssp HTT-HHHHHHHHHHH---------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-
T ss_pred ccccHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc
Confidence 466777777776543 233445555555544433333 2355555555555555554443222
Q ss_pred -HHHHHHHHHH---HCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003449 402 -SAMKVFEEMR---SAGC--KPNICTFNALIKMHGNRGNFVEMMKVFD 443 (819)
Q Consensus 402 -~A~~~~~~~~---~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 443 (819)
+-.++.+.++ +.|- .-|......+...|.+.|++.+|+..|-
T Consensus 67 p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 67 PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 1222222222 1211 2356677778888888888888877663
No 413
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=61.34 E-value=1.6e+02 Score=29.53 Aligned_cols=82 Identities=16% Similarity=0.289 Sum_probs=49.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHH-HHHHH
Q 003449 672 YMYSRSENFARAEDVLREILAK---GIKPDIISYN--TVIFAYCRNGRMKEASRIFSEMRD-----SGLVPDVI-TYNTF 740 (819)
Q Consensus 672 ~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~-~~~~l 740 (819)
....+.++.++|+++++++.+. --.|+...|. .++.++...|+.+++.+.+++... -|+.|+.. .|+.+
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~l 162 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSL 162 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHH
Confidence 3445566888888888887742 1234544443 445666677888888888877766 35555444 35555
Q ss_pred HHHHHh-cCChHHH
Q 003449 741 VASYAA-DSLFVEA 753 (819)
Q Consensus 741 ~~~~~~-~g~~~~A 753 (819)
..-|.+ .|++..+
T Consensus 163 ssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 163 SSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHhHHHH
Confidence 544443 3444433
No 414
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=61.23 E-value=52 Score=25.74 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003449 733 DVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 733 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
|...-..++..+...|++++|++.+-.+++.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4456666667777777777777777776654
No 415
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.80 E-value=1.7e+02 Score=28.52 Aligned_cols=92 Identities=12% Similarity=0.051 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003449 210 AYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCC 289 (819)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~ 289 (819)
.+..=|.+++..++|.++..+.-+.-+.--+-.......-|-.|.|.| ....+.++-......--.-+...|.+++..|
T Consensus 85 LcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~-Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 85 LCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQ-EPAAMLEVASAWLQDPSNQSLPEYGTVAELY 163 (309)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence 445557888888888888877666543311222333344444577777 6777777666666532222333455554443
Q ss_pred -----HcCCCHHHHHHHH
Q 003449 290 -----RRGSLHEEAAGVF 302 (819)
Q Consensus 290 -----~~~g~~~~A~~~~ 302 (819)
.-.|.+++|+++.
T Consensus 164 Ll~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 164 LLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhccccHHHHHHHH
Confidence 3357777776665
No 416
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=60.72 E-value=1.8e+02 Score=28.68 Aligned_cols=20 Identities=15% Similarity=0.438 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhcCChHHHH
Q 003449 490 DTFNTLISAYSRCGSFDQAM 509 (819)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~A~ 509 (819)
.+|..|+.++|..|+.+..+
T Consensus 322 K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhHHHHHHhcCChHHHHH
Confidence 35667777777777766443
No 417
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=60.62 E-value=5e+02 Score=33.92 Aligned_cols=321 Identities=9% Similarity=0.033 Sum_probs=163.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003449 459 TLLAVFGQNGMDSEVSGVFKEMKRAGF--IPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR 536 (819)
Q Consensus 459 ~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 536 (819)
.+..+-.+.+.+..|.-.++.-..... .-...-+..+...|...+++|...-+...-.. +...+.. +-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~q-il~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQQ-ILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHHH-HHHHHh
Confidence 444566677888888888877311100 11122344455588888999888777664221 2333333 334567
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHH
Q 003449 537 GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERA 616 (819)
Q Consensus 537 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 616 (819)
.|+|..|...|+.+.+.+ ++...+++.++......+.++..+...+-......+.....++.-..+--+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 899999999999999864 3336677777777777788877777655554433222223333333444566666655555
Q ss_pred HHHHHHCCCCCCHHHHHH--HHHHHHh--cCChHHHHHHHHHHhhC--------CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 003449 617 FLELKKKGFSPDIPTLNA--MISIYGR--RQMVAKTNEILHFMNDS--------GFTPS-LTTYNTLMYMYSRSENFARA 683 (819)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~--l~~~~~~--~~~~~~A~~~~~~~~~~--------~~~p~-~~~~~~l~~~~~~~g~~~~A 683 (819)
.. +. +...|.. ++....+ ..+.-.-.+..+.+.+. +..-+ ...|..++....-. +.+.-
T Consensus 1541 l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~ 1612 (2382)
T KOG0890|consen 1541 LS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENS 1612 (2382)
T ss_pred hh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHH
Confidence 44 11 2222222 1222211 11111111222222221 11100 12233333322111 11111
Q ss_pred HHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-----HHHHHHHHHHHHhcCChHHH
Q 003449 684 EDVLREILA-KGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD----SGLVPD-----VITYNTFVASYAADSLFVEA 753 (819)
Q Consensus 684 ~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~-----~~~~~~l~~~~~~~g~~~~A 753 (819)
.+.+..... ....-+...|..-+. +.+..-.+.+-.-.+++ ....|+ ..+|...+.....+|.++.|
T Consensus 1613 ~~~l~~~s~~~~s~~~sd~W~~Rl~---~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNRLE---RTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHhhccCccccccccchhHHHHHH---HhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 111111100 000111222222221 11111112222222211 111211 24788888888889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCC
Q 003449 754 LDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 754 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 800 (819)
...+-++.+.+ -+.++...+..+...|+...|+.++++.++.+-
T Consensus 1690 ~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1690 QNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 99988888754 344666778888899999999999999886543
No 418
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=59.13 E-value=68 Score=28.82 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHCCCCCCH--H-----HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 715 MKEASRIFSEMRDSGLVPDV--I-----TYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 715 ~~~A~~~~~~~~~~g~~p~~--~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.+.|+.+|+.+.+.--.|.. . .-...+..|.+.|.+++|.+++++..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 56677777777664222211 1 112333456666667777766666654
No 419
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=58.64 E-value=72 Score=25.14 Aligned_cols=22 Identities=23% Similarity=0.101 Sum_probs=11.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 003449 706 IFAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 706 ~~~~~~~g~~~~A~~~~~~~~~ 727 (819)
+..+...|++++|...+++.++
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3444455555555555555544
No 420
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=58.20 E-value=37 Score=32.99 Aligned_cols=61 Identities=15% Similarity=0.077 Sum_probs=44.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHH
Q 003449 744 YAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
..+.|+.++|.++++.+.+ +.| ++.++..++...-..++.-+|-..|-+++...|.+++..
T Consensus 126 ~~~~Gk~ekA~~lfeHAla--laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALA--LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred HHhccchHHHHHHHHHHHh--cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 4567778888888888777 456 567777777776677777788888888888888776653
No 421
>PHA02875 ankyrin repeat protein; Provisional
Probab=58.16 E-value=2.5e+02 Score=29.71 Aligned_cols=16 Identities=13% Similarity=-0.082 Sum_probs=7.6
Q ss_pred HHHHhCCCHHHHHHHH
Q 003449 322 DVYGKCRRPKEAMQVL 337 (819)
Q Consensus 322 ~~~~~~g~~~~A~~~~ 337 (819)
...++.|+.+.+..++
T Consensus 73 ~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 73 HDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHCCCHHHHHHHH
Confidence 3344555555444444
No 422
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.72 E-value=3.3e+02 Score=30.87 Aligned_cols=55 Identities=16% Similarity=0.074 Sum_probs=28.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003449 356 ISAYARDGLLEEAMELKTQMVEIGITP---DVFTYTTLLSGFEKAGKDESAMKVFEEMRS 412 (819)
Q Consensus 356 i~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 412 (819)
|+.+.+.+.+++|++..+..... .+ -.......|..+...|++++|-...-.|..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 55566666666666655543322 22 112344445555555666666555555543
No 423
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=57.44 E-value=3.4e+02 Score=30.98 Aligned_cols=435 Identities=11% Similarity=0.019 Sum_probs=0.0
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hcCCHHH
Q 003449 326 KCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFE---KAGKDES 402 (819)
Q Consensus 326 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~---~~g~~~~ 402 (819)
..|.-+.-+.-+++-... ..-+...+..||..+.+.|++++...--.+|.+. .+.....|...+.... ..+...+
T Consensus 91 ~~~~~~~ei~t~~ee~ai-~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~ 168 (881)
T KOG0128|consen 91 NEGGGNQEIRTLEEELAI-NSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKE 168 (881)
T ss_pred ccccchhHHHHHHHHhcc-cccchHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhH
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--------------HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 003449 403 AMKVFEEMRSAGCKPNICTFNALIKMHGNRGN--------------FVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNG 468 (819)
Q Consensus 403 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 468 (819)
+..+|++.+.. ..++..|.-.+......+. +++|++.+.-....| ......|.-+-..|..+-
T Consensus 169 v~~~~ekal~d--y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G-~~~we~~~E~e~~~l~n~ 245 (881)
T KOG0128|consen 169 VEELFEKALGD--YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEG-AAIWEMYREFEVTYLCNV 245 (881)
T ss_pred HHHHHHHHhcc--cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhccc-HHHHHHHHHHHHHHHHhH
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003449 469 MDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFA 548 (819)
Q Consensus 469 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 548 (819)
+.++...++..-...+ .|..+-..-..--.+..-++.+..-++.+... ..+-+..|+
T Consensus 246 ~~~qv~a~~~~el~~~--~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~---------------------l~~~~~~~e 302 (881)
T KOG0128|consen 246 EQRQVIALFVRELKQP--LDEDTRGWDLSEQSKAHVYDVETKKLDDALKN---------------------LAKILFKFE 302 (881)
T ss_pred HHHHHHHHHHHHHhcc--chhhhhHHHHHHHHhcchHHHHhccHHHHHHH---------------------HHHHHHHHH
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC
Q 003449 549 EMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPD 628 (819)
Q Consensus 549 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 628 (819)
+..+. ..+-...|..++.-+.+.|+.-....+++++.....-....-...-...-...+-.+.+...+...... .
T Consensus 303 ~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~----c 377 (881)
T KOG0128|consen 303 RLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRS----C 377 (881)
T ss_pred HHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcC----C
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-------------HHHHHHHHHHHHHCCC
Q 003449 629 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSEN-------------FARAEDVLREILAKGI 695 (819)
Q Consensus 629 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~~~~~~~ 695 (819)
..+....-.+.....+..+-.+++..-....+.-....++....-..++++ +..|...|.+......
T Consensus 378 p~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~ 457 (881)
T KOG0128|consen 378 PWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQL 457 (881)
T ss_pred chHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHH
Q 003449 696 KPDIISYNTVIFAYC-RNGRMKEASRIFSEMRDSGLVPDVI-TYNTFVASYAADSLFVEALDVVRYMIKQGCKP--NQNT 771 (819)
Q Consensus 696 ~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~ 771 (819)
.+...+.......+. ..++++.++.+++.....|.. +.. .|...+..-...|+...|..+++.+.-.-..| -..+
T Consensus 458 Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~-~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev 536 (881)
T KOG0128|consen 458 DTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG-SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEV 536 (881)
T ss_pred hhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc-hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHH
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHH
Q 003449 772 YNSIVDGYCKLNQRYEAITFVNN 794 (819)
Q Consensus 772 ~~~l~~~~~~~g~~~~A~~~~~~ 794 (819)
+..+...-...|.++.+.....+
T Consensus 537 ~~~~~r~Ere~gtl~~~~~~~~~ 559 (881)
T KOG0128|consen 537 LEFFRRFEREYGTLESFDLCPEK 559 (881)
T ss_pred HHHHHHHHhccccHHHHhhhHHh
No 424
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.77 E-value=48 Score=27.03 Aligned_cols=27 Identities=30% Similarity=0.624 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003449 351 TYNSLISAYARDGLLEEAMELKTQMVE 377 (819)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 377 (819)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 367777777777778888877777766
No 425
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.70 E-value=3.8e+02 Score=31.34 Aligned_cols=62 Identities=19% Similarity=0.149 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH-HHHHHHH---HHHHcCCHHHHHHHHHHHHHc
Q 003449 176 IAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVY-AYTSLIT---TYASNGRYREAVMVFKKMEEE 237 (819)
Q Consensus 176 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~---~~~~~g~~~~A~~~~~~m~~~ 237 (819)
+..-+..+....+|++|..+.+.....+..-... .+..... -+..+|++++|++.|.++...
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d 375 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEID 375 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccC
Confidence 5556666667777888888777655432211111 1222222 255788999999999988653
No 426
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=56.55 E-value=25 Score=25.15 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 003449 750 FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 750 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
+++..++++.+.. .+-|......++.+|...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455555555543 233555666889999999999999999998765
No 427
>PRK12798 chemotaxis protein; Reviewed
Probab=55.72 E-value=2.6e+02 Score=29.12 Aligned_cols=193 Identities=9% Similarity=0.021 Sum_probs=114.5
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHhcCCH
Q 003449 606 KSDLLMDTERAFLELKKKGFSPDIPTLNAMISIY-GRRQMVAKTNEILHFMNDSGFTPSLT----TYNTLMYMYSRSENF 680 (819)
Q Consensus 606 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~ 680 (819)
-.|+..++.+.+..+.....++....+-.|+.+- ....+..+|+++|+...-. -|... .+.--+......|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 4688888888888887666666777777776654 4566788999999887653 34432 234445556778888
Q ss_pred HHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHH
Q 003449 681 ARAEDVLREILAKGIKPDII---SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV--ITYNTFVASYAADSLFVEALD 755 (819)
Q Consensus 681 ~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~ 755 (819)
+++..+-.+.... +.-++. .+..+...+.+.++-..- ..+..++.. +.|+. ..|..++..-.-.|+.+-|.-
T Consensus 202 ~rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~ 278 (421)
T PRK12798 202 DKFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSF-MDPERQRELYLRIARAALIDGKTELARF 278 (421)
T ss_pred HHHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8887776666643 222222 222233344444432211 224444432 33333 478888888888899888888
Q ss_pred HHHHHHHcCCCCC---H--HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 756 VVRYMIKQGCKPN---Q--NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 756 ~~~~~~~~g~~p~---~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
.-+++....-..+ . ..|... +-.-..+.++|.+.+..+....-...+.
T Consensus 279 As~~A~~L~~~~~~~~~ra~LY~aa--a~v~s~~~~~al~~L~~I~~~~L~~~Dr 331 (421)
T PRK12798 279 ASERALKLADPDSADAARARLYRGA--ALVASDDAESALEELSQIDRDKLSERDR 331 (421)
T ss_pred HHHHHHHhccCCCcchHHHHHHHHH--HccCcccHHHHHHHHhcCChhhCChhhH
Confidence 8888876431111 1 122222 2235566888888777776554444333
No 428
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=54.29 E-value=1.3e+02 Score=31.34 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=40.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 003449 637 SIYGRRQMVAKTNEILHFMNDSGFTPSLT--TYNTLMYMYS--RSENFARAEDVLREILAK 693 (819)
Q Consensus 637 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 693 (819)
..+.+.+++..|.++++.+.+. ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445788999999999999886 555554 4455555554 356788999999988764
No 429
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.37 E-value=1.7e+02 Score=26.39 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHCCCCCC--HhhH-----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 003449 330 PKEAMQVLREMKINGCLPS--IVTY-----NSLISAYARDGLLEEAMELKTQMVE 377 (819)
Q Consensus 330 ~~~A~~~~~~~~~~g~~~~--~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~ 377 (819)
++.|+.+++.+.+.-..|. .... -..+..|.++|.+++|.+++++..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 4567777776665532221 1111 1223345566666666666666554
No 430
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=53.22 E-value=1.2e+02 Score=24.50 Aligned_cols=78 Identities=19% Similarity=0.200 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 003449 294 LHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKT 373 (819)
Q Consensus 294 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 373 (819)
..+||..+.+.+...+. ....+--.-+..+...|++++|+ + .-.. ...||...|-+|.. .+.|.-+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL--l-~~~~-~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL--L-LPQC-HCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH--H-HHTT-S--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH--H-hccc-CCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 45555555555555432 11111122233445556665551 1 1111 13455555544432 34555555555555
Q ss_pred HHHHc
Q 003449 374 QMVEI 378 (819)
Q Consensus 374 ~m~~~ 378 (819)
++...
T Consensus 94 rla~~ 98 (116)
T PF09477_consen 94 RLASS 98 (116)
T ss_dssp HHCT-
T ss_pred HHHhC
Confidence 44443
No 431
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.74 E-value=19 Score=35.60 Aligned_cols=85 Identities=13% Similarity=0.044 Sum_probs=35.0
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 003449 642 RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASR 720 (819)
Q Consensus 642 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 720 (819)
.|.+++|++.+...+... ++....|..-..++.+.+....|++=+...++. .|| ..-|-.-..+..-.|++++|.+
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHHH
Confidence 344455555554444432 223333333444444444444444444444432 222 1122222223333444555555
Q ss_pred HHHHHHHCC
Q 003449 721 IFSEMRDSG 729 (819)
Q Consensus 721 ~~~~~~~~g 729 (819)
.+....+.+
T Consensus 204 dl~~a~kld 212 (377)
T KOG1308|consen 204 DLALACKLD 212 (377)
T ss_pred HHHHHHhcc
Confidence 554444433
No 432
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=52.26 E-value=35 Score=35.63 Aligned_cols=102 Identities=14% Similarity=0.108 Sum_probs=69.3
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 003449 636 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTY-NTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNG 713 (819)
Q Consensus 636 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 713 (819)
++-+...+.++.|..++.++++. .|+-..| ..-..++.+.+++..|+.=+.++++.. |+ ...|..=..++...+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 44456677888888888888875 4655443 333477888888888888888888753 33 344444456666777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003449 714 RMKEASRIFSEMRDSGLVPDVITYNTFVAS 743 (819)
Q Consensus 714 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 743 (819)
.+.+|...|+.... +.|+..-....+.-
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHH
Confidence 78888888887776 67766655554443
No 433
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.98 E-value=52 Score=32.48 Aligned_cols=52 Identities=12% Similarity=0.087 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 003449 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRY 224 (819)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 224 (819)
....+..++.+++.....++|.-.+++..+.|.- +...|-.=++.++|..-+
T Consensus 298 ~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i-~l~~yLr~VR~lsReQF~ 349 (365)
T KOG2391|consen 298 TAPLYKQILECYALDLAIEDAIYSLGKSLRDGVI-DLDQYLRHVRLLSREQFI 349 (365)
T ss_pred cchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCee-eHHHHHHHHHHHHHHHHH
Confidence 3457888999998888888888899888887754 666776667766664433
No 434
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=51.37 E-value=94 Score=26.16 Aligned_cols=41 Identities=15% Similarity=0.274 Sum_probs=20.8
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHH
Q 003449 718 ASRIFSEMRDSGLVPDVI-TYNTFVASYAADSLFVEALDVVR 758 (819)
Q Consensus 718 A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~ 758 (819)
..++|..|...|+--... .|...+..+-..|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555554433222 34444555555566666655554
No 435
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=50.84 E-value=2.3e+02 Score=27.14 Aligned_cols=58 Identities=12% Similarity=-0.003 Sum_probs=31.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHh
Q 003449 599 TLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGR-RQMVAKTNEILHFMN 656 (819)
Q Consensus 599 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~ 656 (819)
.++....+.|+++++...++++.+.+...+..-.+.|..+|-. -|....+..++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 3455566677777777777777776555555555555555522 233344444444443
No 436
>PRK11619 lytic murein transglycosylase; Provisional
Probab=50.60 E-value=4.3e+02 Score=30.06 Aligned_cols=322 Identities=8% Similarity=0.006 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 003449 280 YTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAY 359 (819)
Q Consensus 280 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 359 (819)
..|..... ..+.|+...+.++...+...-. .....|..|.... .....++....+++-.. .+.....-......+
T Consensus 35 ~~f~~A~~-a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~--~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 35 QRYQQIKQ-AWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRANPT--LPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHHH-HHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHCCC--CchHHHHHHHHHHHH
Confidence 34444444 4456888888887777653311 1222333332211 23346666666554321 121222233344456
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH--
Q 003449 360 ARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVE-- 437 (819)
Q Consensus 360 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-- 437 (819)
.+.+++...++++.. .+.+...-+....+....|+.++|....+.+-..|.. .....+.++..+.+.|.+..
T Consensus 110 a~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d 183 (644)
T PRK11619 110 ARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLA 183 (644)
T ss_pred HHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHH
Confidence 677788777663321 2345556677788888899988887777776555532 35566777777776665432
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---------CCCCCHHHHH---HHHHHHHhcCCh
Q 003449 438 MMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA---------GFIPERDTFN---TLISAYSRCGSF 505 (819)
Q Consensus 438 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------~~~~~~~~~~---~l~~~~~~~g~~ 505 (819)
..+-++.+...| +...-..+...+. .......+.+..+... .+.++...-. ..+.-+ ...+.
T Consensus 184 ~w~R~~~al~~~---~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rl-ar~d~ 257 (644)
T PRK11619 184 YLERIRLAMKAG---NTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASV-ARQDA 257 (644)
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHH-HHhCH
Confidence 333333333322 3333333333221 1111111111111111 1112221111 111222 23455
Q ss_pred HHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 003449 506 DQAMSIYKRMLEAG-VTPD--LSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALS 582 (819)
Q Consensus 506 ~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 582 (819)
+.|..++....... ..+. ...+..+.......+..++|...+....... .+......-+..-...++++.+...+
T Consensus 258 ~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i 335 (644)
T PRK11619 258 ENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWL 335 (644)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHH
Confidence 66777776654432 2111 1223333333333322455555555543322 12233333333334667777766666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003449 583 EEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELK 621 (819)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 621 (819)
..|.... ........-++.++...|+.++|...|+.+.
T Consensus 336 ~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 336 ARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6653322 2233344445666566777777777777764
No 437
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=50.02 E-value=1.2e+02 Score=23.55 Aligned_cols=63 Identities=19% Similarity=0.242 Sum_probs=29.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003449 475 GVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQS 543 (819)
Q Consensus 475 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 543 (819)
+++..+.+.|+- +......+-.+--..|+.+.|.+++..+. + ....|..++.++...|.-+-|
T Consensus 23 ~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r----g~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 23 DVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-Q----KEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-c----CCcHHHHHHHHHHHcCchhhh
Confidence 444555555433 22222222222223456666666666655 3 223455555555555544333
No 438
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.85 E-value=2.1e+02 Score=29.82 Aligned_cols=53 Identities=17% Similarity=0.108 Sum_probs=26.0
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHH--HcCCHHHHHHHHHHHHH
Q 003449 324 YGKCRRPKEAMQVLREMKINGCLPSIV--TYNSLISAYA--RDGLLEEAMELKTQMVE 377 (819)
Q Consensus 324 ~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~~ 377 (819)
+.+.+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34566666666666666654 333332 2333333332 24455555555555444
No 439
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.72 E-value=93 Score=30.14 Aligned_cols=56 Identities=11% Similarity=0.070 Sum_probs=28.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003449 739 TFVASYAADSLFVEALDVVRYMIK----QGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNN 794 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 794 (819)
.++..|...|++++|.++++.+.. .|... ...+...+..++.+.|+.++.+.+.=+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 445556666666666666665542 12111 234444555556666666655554433
No 440
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=49.23 E-value=3.2e+02 Score=28.25 Aligned_cols=95 Identities=14% Similarity=0.194 Sum_probs=52.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------HHHH
Q 003449 705 VIFAYCRNGRMKEASRIFSEMRDS-GLVPDV----ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-------QNTY 772 (819)
Q Consensus 705 l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~~ 772 (819)
+...|-..|+...-..++...... .+..|. ...+.++..|...+.++.|.+++.+.. .|+ ...+
T Consensus 175 ~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~----~pe~~snne~ARY~ 250 (493)
T KOG2581|consen 175 LYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV----YPEAASNNEWARYL 250 (493)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc----CccccccHHHHHHH
Confidence 334444556655555555554432 222232 234555666666677777776666553 221 1223
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCCCCC
Q 003449 773 NSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 773 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 803 (819)
..++..-.-++++..|.+.+-.+..+.|...
T Consensus 251 yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 251 YYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 3445555566777777777777777777643
No 441
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=48.84 E-value=2.9e+02 Score=27.62 Aligned_cols=98 Identities=16% Similarity=0.214 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----
Q 003449 699 IISYNTVIFAYCRNGRMKEASRIFSEMRD----SGLVPDVITYN-TFVASYAADSLFVEALDVVRYMIKQGCKPNQ---- 769 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---- 769 (819)
...+......||+.|+.+.|.+.+.+-.+ .|.+.|...+. .++-.|....-+.+-++..+.+.+.|-.-+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 34555666777888887777777666544 35555555333 3333444444466666667777776655543
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhc
Q 003449 770 NTYNSIVDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 770 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
.+|..+ .+....++.+|..+|-.....
T Consensus 184 KvY~Gl--y~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 184 KVYQGL--YCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHH--HHHHHHhHHHHHHHHHHHccc
Confidence 223222 233445677777776665433
No 442
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.97 E-value=69 Score=21.41 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=15.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 003449 292 GSLHEEAAGVFEEMKLAGFSPDKVTYNALL 321 (819)
Q Consensus 292 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 321 (819)
.|-.+++..++++|.+.|+..+...|..++
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 344445555555555555555544444443
No 443
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=46.67 E-value=2.6e+02 Score=28.86 Aligned_cols=62 Identities=19% Similarity=0.178 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003449 174 SVIAVLISMLGKEGKVSVAASLLHGLHKD--GFDIDVYAYTSLITTYASNGRYREAVMVFKKME 235 (819)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 235 (819)
..+-.+++.-.-.|++....+.++.+.+. |-.|...+-.-+.=+|.-.|++.+|.+.|-..+
T Consensus 236 fsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 236 FSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666677776666666666543 222222222344556667777888888876654
No 444
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=45.92 E-value=2.9e+02 Score=26.75 Aligned_cols=187 Identities=8% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003449 630 PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE-NFARAEDVLREILAKGIKPDIISYNTVIFA 708 (819)
Q Consensus 630 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 708 (819)
.++..+-..+.+......|+++.+..+..+ +.+-.+|..--......+ ++.+-++.++++++...+ |-..|..--..
T Consensus 44 ~~m~YfRAI~~~~E~S~RAl~LT~d~i~lN-pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK-NYQvWHHRr~i 121 (318)
T KOG0530|consen 44 DVMDYFRAIIAKNEKSPRALQLTEDAIRLN-PANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK-NYQVWHHRRVI 121 (318)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhC-cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc-chhHHHHHHHH
Q ss_pred HHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhc
Q 003449 709 YCRNGRMK-EASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQ-----NTYNSIVDGYCKL 782 (819)
Q Consensus 709 ~~~~g~~~-~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-----~~~~~l~~~~~~~ 782 (819)
....|+.. .-+++.+.|+...-+ +-++|..--+++..-+.++.=+.+..++++.++.-|+ ..+.....+....
T Consensus 122 ve~l~d~s~rELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~ 200 (318)
T KOG0530|consen 122 VELLGDPSFRELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISK 200 (318)
T ss_pred HHHhcCcccchHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccH
Q ss_pred CcHHHHHHHHHHhhhcCCCCCHH-HHHHHHHHHHhhcC
Q 003449 783 NQRYEAITFVNNLSKLDPHVTKE-LECKLSDRIAKKWT 819 (819)
Q Consensus 783 g~~~~A~~~~~~~~~~~p~~~~~-~~~~l~~~l~~~~~ 819 (819)
-..++-+.+..+.+...|++.+. .|.+=+-...+.|+
T Consensus 201 ~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~ 238 (318)
T KOG0530|consen 201 AELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLS 238 (318)
T ss_pred HHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCc
No 445
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=45.17 E-value=3.1e+02 Score=26.84 Aligned_cols=25 Identities=20% Similarity=0.040 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHH
Q 003449 278 DSYTFNTLISCCRRGSLHEEAAGVF 302 (819)
Q Consensus 278 ~~~~~~~ll~~~~~~g~~~~A~~~~ 302 (819)
|......+...|.+.|++.+|+.-|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4555566666666777666666544
No 446
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=45.17 E-value=3.1e+02 Score=26.98 Aligned_cols=63 Identities=13% Similarity=0.067 Sum_probs=37.0
Q ss_pred CCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 003449 311 SPDKVTYNALLDVYGKCRRPKEAMQVLREMKIN-GCLPSIVTYNSLISAYARDGLLEEAMELKT 373 (819)
Q Consensus 311 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 373 (819)
.++..+...++..+++.+++.+-.++++..... +...|...|..+|+.....|+..-..++.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 445555566666666666666666666665443 344456666666666666666554444433
No 447
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.18 E-value=35 Score=33.90 Aligned_cols=88 Identities=11% Similarity=0.015 Sum_probs=40.9
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 003449 606 KSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSL-TTYNTLMYMYSRSENFARAE 684 (819)
Q Consensus 606 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~ 684 (819)
..|.++.|++.|...++.. ++....|..-.+.+.+.+....|++-+....+. .||. .-|-.-..+-...|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 3455555555555555442 223333444444455555555555555554443 2332 12333333334455555555
Q ss_pred HHHHHHHHCCCC
Q 003449 685 DVLREILAKGIK 696 (819)
Q Consensus 685 ~~~~~~~~~~~~ 696 (819)
..|....+.++.
T Consensus 203 ~dl~~a~kld~d 214 (377)
T KOG1308|consen 203 HDLALACKLDYD 214 (377)
T ss_pred HHHHHHHhcccc
Confidence 555555554443
No 448
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.03 E-value=51 Score=32.34 Aligned_cols=34 Identities=9% Similarity=0.139 Sum_probs=15.5
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHH
Q 003449 774 SIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELE 807 (819)
Q Consensus 774 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 807 (819)
..+..-.+.||+++|+.+++++.++|......++
T Consensus 262 ~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 262 QAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4444444444444444444444444444433333
No 449
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=43.64 E-value=98 Score=20.69 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=11.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003449 362 DGLLEEAMELKTQMVEIGITPDVFTYT 388 (819)
Q Consensus 362 ~g~~~~A~~~~~~m~~~g~~pd~~~~~ 388 (819)
.|.+.++..++++|.+.|+.-+...|.
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHH
Confidence 344444444444444444444443333
No 450
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=43.38 E-value=53 Score=32.09 Aligned_cols=64 Identities=9% Similarity=-0.045 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHH
Q 003449 698 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNT-FVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 698 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
|+..|...+..-.+.|.+.+.-.++.+..... ..|...|.. ...-+...++++.+..++.+.+.
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR 170 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLR 170 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhc
Confidence 44444444443334444555555555554421 112222221 22233444555555555555544
No 451
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.15 E-value=74 Score=29.36 Aligned_cols=33 Identities=18% Similarity=0.062 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 730 LVPDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 730 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
..|+..+|..++.++...|+.++|..+.+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355555666666666666666666666665554
No 452
>PRK13342 recombination factor protein RarA; Reviewed
Probab=42.88 E-value=4.4e+02 Score=27.99 Aligned_cols=46 Identities=22% Similarity=0.215 Sum_probs=26.4
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003449 352 YNSLISAYAR---DGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKA 397 (819)
Q Consensus 352 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~ 397 (819)
+..++.++.+ .++.+.|+..+..|.+.|..|....-..++.++...
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 3444444444 367777777777777777666655444444444333
No 453
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=42.44 E-value=2e+02 Score=23.89 Aligned_cols=62 Identities=13% Similarity=0.112 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH----cC-CCCC-HHHHH----HHHHHHHhcCcHHHHHHHHHHhhh
Q 003449 736 TYNTFVASYAADSLFVEALDVVRYMIK----QG-CKPN-QNTYN----SIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g-~~p~-~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
.+..|..++...|+|++++.-.++.+. .| +.-| -..|. +-+.++-..|+.++|.+.|+.+-+
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 344555556666666666555444432 12 1222 12232 223455577888888877776543
No 454
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.25 E-value=22 Score=29.83 Aligned_cols=34 Identities=32% Similarity=0.498 Sum_probs=22.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003449 217 TYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNV 252 (819)
Q Consensus 217 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 252 (819)
.+...|.-.+|..+|++|++.|-+||. |+.|+..
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 344455566788888888888877664 5555543
No 455
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=42.24 E-value=3.1e+02 Score=26.02 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHhhCCCCC
Q 003449 645 VAKTNEILHFMNDSGFTP 662 (819)
Q Consensus 645 ~~~A~~~~~~~~~~~~~p 662 (819)
+++|.+++.++.+.|+.|
T Consensus 254 ~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 254 IDEALKILAELWKLGYSP 271 (333)
T ss_pred HHHHHHHHHHHHHcCCCH
Confidence 455555555554444433
No 456
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=42.12 E-value=57 Score=18.75 Aligned_cols=17 Identities=12% Similarity=-0.070 Sum_probs=9.5
Q ss_pred cHHHHHHHHHHhhhcCC
Q 003449 784 QRYEAITFVNNLSKLDP 800 (819)
Q Consensus 784 ~~~~A~~~~~~~~~~~p 800 (819)
+.+.|..++++++...|
T Consensus 2 ~~~~~r~i~e~~l~~~~ 18 (33)
T smart00386 2 DIERARKIYERALEKFP 18 (33)
T ss_pred cHHHHHHHHHHHHHHCC
Confidence 44555555555555555
No 457
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=41.50 E-value=63 Score=19.44 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003449 750 FVEALDVVRYMIKQGCKPNQNTYNSIV 776 (819)
Q Consensus 750 ~~~A~~~~~~~~~~g~~p~~~~~~~l~ 776 (819)
++.|..+|++.+. +.|+..+|...+
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~WikyA 27 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWIKYA 27 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHHHHH
Confidence 4556666666655 345555554443
No 458
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=41.48 E-value=1.1e+02 Score=34.20 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=8.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHH
Q 003449 319 ALLDVYGKCRRPKEAMQVLRE 339 (819)
Q Consensus 319 ~l~~~~~~~g~~~~A~~~~~~ 339 (819)
-++..|.+.|-.+.|.++.+.
T Consensus 410 k~l~iC~~~~L~~~a~~I~~~ 430 (566)
T PF07575_consen 410 KLLEICAELGLEDVAREICKI 430 (566)
T ss_dssp HHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 333444444444444444443
No 459
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.09 E-value=4.3e+02 Score=27.41 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=39.2
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003449 315 VTYNALLDVYGKCRRPKEAMQVLREMKINGCLPS---IVTYNSLISAYARDGLLEEAMELKTQMVE 377 (819)
Q Consensus 315 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 377 (819)
..+.-+.+-|..+|+++.|++.|-+...- +... +..|-.+|..-.-.|+|.+......+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 35667777888888888888888775433 3222 23344555555556777766666666554
No 460
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=40.91 E-value=5.4e+02 Score=29.11 Aligned_cols=191 Identities=10% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH----------HHHHHHHHhc
Q 003449 611 MDTERAFLELKKKGFSPD---IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTY----------NTLMYMYSRS 677 (819)
Q Consensus 611 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~----------~~l~~~~~~~ 677 (819)
++-...+.+|.++--.|+ ..+...++-.|....+++.-+++.+.+... ||..-+ .-.++--.+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCC
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003449 678 ENFARAEDVLREILAKGIKPDIISYNTVIFAYC---------RNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADS 748 (819)
Q Consensus 678 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 748 (819)
|+-++|+...-.+.+..-...+.+|....+.|. ..+..+.|.++|++..+ ..|....=.+++..+...|
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhh
Q ss_pred C-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhc
Q 003449 749 L-FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAKKW 818 (819)
Q Consensus 749 ~-~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~~~~ 818 (819)
. ++...++-.-..+ |...+.+.|.++.-..+|+-+.=.+...-...|.+.+..-.++.
T Consensus 335 ~~Fens~Elq~Igmk------------Ln~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mf 393 (1226)
T KOG4279|consen 335 EHFENSLELQQIGMK------------LNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMF 393 (1226)
T ss_pred hhccchHHHHHHHHH------------HHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHh
No 461
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.12 E-value=59 Score=31.95 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 003449 317 YNALLDVYGKCRRPKEAMQVLREMKINGCL 346 (819)
Q Consensus 317 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 346 (819)
|+..|..-.+.||+++|+.+++|.++.|..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 445566666666666666666666665544
No 462
>PHA02875 ankyrin repeat protein; Provisional
Probab=40.01 E-value=4.8e+02 Score=27.60 Aligned_cols=48 Identities=10% Similarity=0.001 Sum_probs=21.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHh--HHHHHHHHHhCCCHHHHHHHH
Q 003449 286 ISCCRRGSLHEEAAGVFEEMKLAGFSPDKVT--YNALLDVYGKCRRPKEAMQVL 337 (819)
Q Consensus 286 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~ 337 (819)
+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+.-++
T Consensus 106 L~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 106 LHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI 155 (413)
T ss_pred HHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 33344455554 4444455555444321 122334445566655444333
No 463
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=39.14 E-value=3.2e+02 Score=27.67 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003449 716 KEASRIFSEMRDSGLVPDVI----TYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYC 780 (819)
Q Consensus 716 ~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 780 (819)
+++..++..++.. .|+.. .|..++......|.+++.+.+|++++..|.+|-...-..+++.+-
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4555556655552 34432 455566666666777777777777777777775555445555543
No 464
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=39.05 E-value=1.7e+02 Score=25.42 Aligned_cols=85 Identities=14% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003449 136 LLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGK-VSVAASLLHGLHKDGFDIDVYAYTSL 214 (819)
Q Consensus 136 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 214 (819)
+.-++..+...+.+...+.+++.+.......-....+...++.++.+++.... --.+..+|.-+.+.+.+.+..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q ss_pred HHHHHH
Q 003449 215 ITTYAS 220 (819)
Q Consensus 215 ~~~~~~ 220 (819)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
No 465
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.57 E-value=1.7e+02 Score=28.35 Aligned_cols=57 Identities=12% Similarity=0.043 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003449 704 TVIFAYCRNGRMKEASRIFSEMRDS----GL-VPDVITYNTFVASYAADSLFVEALDVVRYM 760 (819)
Q Consensus 704 ~l~~~~~~~g~~~~A~~~~~~~~~~----g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 760 (819)
.++.-|.+.|++++|.++|+.+... |- .+...+...+..++...|+.++.+.+.-++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4455666666666666666666431 11 122234455556666666666666554443
No 466
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=38.41 E-value=5.1e+02 Score=27.44 Aligned_cols=120 Identities=9% Similarity=-0.018 Sum_probs=69.7
Q ss_pred cCCCHHHHHHHHHHHHH-CCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 003449 291 RGSLHEEAAGVFEEMKL-AGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAM 369 (819)
Q Consensus 291 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 369 (819)
..|++..|-+-+...++ ..-.|+.....+ ..+...|+++.+...+...... +.....+...+++...+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 45666666544444333 322344443333 3345677888887777665443 3345566677777777788888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003449 370 ELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAG 414 (819)
Q Consensus 370 ~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 414 (819)
.+-.-|....+. |...........-..|-++++...|+++...+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 887777766554 22222222223334566777777777776543
No 467
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=38.23 E-value=3.2e+02 Score=25.01 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC--------------CCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003449 388 TTLLSGFEKAGKDESAMKVFEEMRSAGC--------------KPNICTFNALIKMHGNRGNFVEMMKVFDE 444 (819)
Q Consensus 388 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 444 (819)
.+++..|-+.-++.++.++++.|.+..+ .+.-...|..+..+.+.|.+|.|+.++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 4456667777777777777777654321 22334566667777777777777777764
No 468
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=38.21 E-value=55 Score=20.62 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhc
Q 003449 771 TYNSIVDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 771 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
+|..|+..-...+++++|..=+++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5666777777777777777777776654
No 469
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=37.95 E-value=7.8e+02 Score=29.50 Aligned_cols=247 Identities=10% Similarity=0.001 Sum_probs=139.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003449 522 PDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLI 601 (819)
Q Consensus 522 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 601 (819)
++..+-...+..+.+.+. +++...+..+.+ .++...-...+.++...+........+..++. .++...-...+
T Consensus 633 ~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d~~VR~~A~ 705 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPDPVVRAAAL 705 (897)
T ss_pred CCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCCHHHHHHHH
Confidence 567777777777777665 345555555553 34444444444444433221111222333333 24445544555
Q ss_pred HHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003449 602 LVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFA 681 (819)
Q Consensus 602 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 681 (819)
..+...+.-. .. .+....+ .+|...-...+.++.+.+..+. +..... .++..+-...+.++...+..+
T Consensus 706 ~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 706 DVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhcccc
Confidence 5554433111 12 2222222 3466555566666666554332 222222 356666667777777766543
Q ss_pred H-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003449 682 R-AEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYM 760 (819)
Q Consensus 682 ~-A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 760 (819)
. +...+..+.+ .+|...-...+.++...|..+.+...+..+.+ .+|..+-...+.++...+. +++...+..+
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~ 846 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEA 846 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHH
Confidence 2 3455555554 35677777788888888876665555555554 3466566667777777765 5677777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 003449 761 IKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 761 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
++ .|+..+-...+.++.+.+.-..+...+.++++
T Consensus 847 L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 847 LT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred hc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 75 56777777778888775334567777777766
No 470
>PF15469 Sec5: Exocyst complex component Sec5
Probab=37.53 E-value=3.2e+02 Score=24.85 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=17.1
Q ss_pred CcHHHHHHHHHHhhhcCCCCCHHHH
Q 003449 783 NQRYEAITFVNNLSKLDPHVTKELE 807 (819)
Q Consensus 783 g~~~~A~~~~~~~~~~~p~~~~~~~ 807 (819)
...++..+.+..+.+++++.+++++
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~ 177 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWY 177 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 4566777777777777776666543
No 471
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=37.29 E-value=1.3e+03 Score=31.98 Aligned_cols=407 Identities=12% Similarity=0.124 Sum_probs=0.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHccCCH
Q 003449 361 RDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGK-DESAMKVFEEMRSAG----CKPNICTFNALIKMHGNRGNF 435 (819)
Q Consensus 361 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~ 435 (819)
+.|....++..|-++... +.|-...-..++....+.-. +..++.+++...... ...+.....++.+.|....+.
T Consensus 2392 q~~~~pnvln~~v~s~~~-~~~~~~lpp~Li~yl~kt~~~wh~~I~lLE~~~~~~~~~~~~~~~~~~dsl~elY~~L~E~ 2470 (3550)
T KOG0889|consen 2392 QQGCRPNVLNALVESLVK-IVPPIELPPHLIKYLGKTYNLWHTSIRLLEDHQSNKEMENTKGDESCLDSLAELYRSLNEE 2470 (3550)
T ss_pred hhccchhHHHHHHHHHHh-hccCCCCCHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhHH
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003449 436 VEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA----GFIPERDTFNTLISAYSRCGSFDQAMSI 511 (819)
Q Consensus 436 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 511 (819)
|.-.-++++ .-...=+.....|.+.|.+++|..+|++.+.. ...-+..-|..-.+.+.++-.--.=.++
T Consensus 2471 Dm~~Glwrr-------r~~~~eT~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~~~~~~~~~Ey~lWed~WI~Ca~eL~QWdv 2543 (3550)
T KOG0889|consen 2471 DMFYGLWRR-------RAKFPETMVALSYEQLGFWEEAQSLYEKAQVKAREGAIPYSESEYKLWEDHWIRCASELQQWDV 2543 (3550)
T ss_pred HHHHHHHHH-------hhccHHHHHHHHHHHhhhHHHHhhHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHccCC--------HHHHHH
Q 003449 512 YKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKP---NELTYSSLLHAYANGRE--------IDQMLA 580 (819)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~~~--------~~~a~~ 580 (819)
+-+..+ ....+..++.+..+.-+|..-.+.+....+.-.+. ....|...+..+....+ ++++..
T Consensus 2544 l~e~~k-----~~~~~~llle~aWrlsdw~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~e~~~ 2618 (3550)
T KOG0889|consen 2544 LTEFGK-----HEGNYELLLECAWRLSDWNDQKDALEQKAKSLSDVPGFRKELYDAFLALQKKNSNGVGEFERLIGEAIQ 2618 (3550)
T ss_pred HHHHHh-----ccCCceeeeehhccCCcchhHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHh
Q 003449 581 LSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKK---GFSPDIPTLNAMISIY-GRRQMVAKTNEILHFMN 656 (819)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~ 656 (819)
+--.-......-.......++.++.+--...+|..++..+.+. +......-+..++... -+.=...+-...|..+.
T Consensus 2619 l~i~~w~~lP~~v~~~h~~lL~~~QqivEl~Ea~~I~s~l~~~n~~n~~~~~~d~Ksil~~Wr~RlP~~~Dd~~~Wsdl~ 2698 (3550)
T KOG0889|consen 2619 LAIREWRQLPERVNHGHVPLLQAFQQIVELQEAAQIYSDLNDGNVQNLDNKAQDIKSILQTWRDRLPNVWDDMNQWSDLI 2698 (3550)
T ss_pred HHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHhhcCCCcchhHHHHHHHH
Q ss_pred hCCCCCCHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003449 657 DSGFTPSLTTYNTLMYMYSR----------SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMR 726 (819)
Q Consensus 657 ~~~~~p~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 726 (819)
.- -...|..+..+|.- .++ .-.|+.--..+.+..+....++|-++.+...+.++.
T Consensus 2699 ~W----Rq~~y~~I~~~~~~~~~~~~~~~ns~~-----------~~~Gyhe~A~~in~fakvArkh~l~~vcl~~L~~iy 2763 (3550)
T KOG0889|consen 2699 TW----RQHAYSMINKAYLPLVPYKQNASNSNN-----------LYRGYHELAWAINRFAKVARKHGLPDVCLNQLAKIY 2763 (3550)
T ss_pred HH----HHHHHHHHHHHhcccchhhhccCCcch-----------HHHhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q ss_pred HCCCCCCHH------HHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 003449 727 DSGLVPDVI------TYNTFVASYAADS-LFVEALDVVRYMIKQGCKP--NQNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 727 ~~g~~p~~~------~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
. .|+.. .+..=+.+|...- ....++++++.---..+.. .+..+..-+....+.|+.++|-..|..+.+
T Consensus 2764 t---lp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQ 2840 (3550)
T KOG0889|consen 2764 T---LPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQ 2840 (3550)
T ss_pred c---cCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHH
Q ss_pred c
Q 003449 798 L 798 (819)
Q Consensus 798 ~ 798 (819)
+
T Consensus 2841 i 2841 (3550)
T KOG0889|consen 2841 I 2841 (3550)
T ss_pred H
No 472
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=37.28 E-value=6.6e+02 Score=28.46 Aligned_cols=232 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhcCCCHHHHHHHH
Q 003449 541 EQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPH---AVLLKTLILVYSKSDLLMDTERAF 617 (819)
Q Consensus 541 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~ 617 (819)
....++++...-..-.-.-..+..=++--...-+-++--..+.+|...--.|+ ..+...++..|....+++...++.
T Consensus 145 ~R~kq~Lk~vq~~ssah~REkflsD~RkAR~~y~G~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLV 224 (1226)
T KOG4279|consen 145 HRMKQVLKSVQVESSAHSREKFLSDLRKAREIYDGDQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLV 224 (1226)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHH
Q ss_pred HHHHHCCCCCCHH----------HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---------cC
Q 003449 618 LELKKKGFSPDIP----------TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR---------SE 678 (819)
Q Consensus 618 ~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---------~g 678 (819)
+.+... ||.. .|...++--.+-|+-++|+.+.-.+.+..-+..+..|....+.|-. .+
T Consensus 225 e~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~ 301 (1226)
T KOG4279|consen 225 EDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAE 301 (1226)
T ss_pred HHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchh
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003449 679 NFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR-MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVV 757 (819)
Q Consensus 679 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 757 (819)
..+.|.+.|++.-+ ..|...+-..+...+...|. ++...++-.--.+ |...+.+.|..+.-..++
T Consensus 302 s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~Fens~Elq~Igmk------------Ln~LlgrKG~leklq~YW 367 (1226)
T KOG4279|consen 302 SLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHFENSLELQQIGMK------------LNSLLGRKGALEKLQEYW 367 (1226)
T ss_pred hHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhhccchHHHHHHHHH------------HHHHhhccchHHHHHHHH
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCC
Q 003449 758 RYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 758 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
+.. ....+-.-.+++.+|+...+.|.++.|..
T Consensus 368 dV~-------------~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 368 DVA-------------TYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred hHH-------------HhhhhhhhccCHHHHHHHHHHHhccCCce
No 473
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=37.23 E-value=7.1e+02 Score=28.83 Aligned_cols=135 Identities=15% Similarity=-0.005 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------CCCCHHHHHHHHHHH
Q 003449 679 NFARAEDVLREIL-AKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG-------------LVPDVITYNTFVASY 744 (819)
Q Consensus 679 ~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-------------~~p~~~~~~~l~~~~ 744 (819)
..++..+.++++. +.|+..+......++... .|++.+|+.++++....+ -..|...+..++..+
T Consensus 179 s~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A--~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL 256 (830)
T PRK07003 179 PAGHIVSHLERILGEERIAFEPQALRLLARAA--QGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL 256 (830)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------hcCcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 003449 745 AADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYC----------KLNQRYEAITFVNNLSKLDPHVTKELECKLSDRI 814 (819)
Q Consensus 745 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~----------~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l 814 (819)
.. |++.+++.+++++...|+......-..+..... ....+.+..++.+....+.++.-...|..++++.
T Consensus 257 ~~-~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~q~~~~~~~~~~~e~~~~~~~a~~~s~~~l~~~~qi~l~g~ 335 (830)
T PRK07003 257 AA-GDGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPASVLDEWPEAADLRRFAELLSPEQVQLFYQIATVGR 335 (830)
T ss_pred Hc-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCccccccccchHHHHHHHHHhCCHHHHHHHHHHHHhHH
Q ss_pred Hh
Q 003449 815 AK 816 (819)
Q Consensus 815 ~~ 816 (819)
..
T Consensus 336 ~e 337 (830)
T PRK07003 336 GE 337 (830)
T ss_pred HH
No 474
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=37.08 E-value=5e+02 Score=26.94 Aligned_cols=211 Identities=8% Similarity=-0.012 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH---------------------
Q 003449 318 NALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMV--------------------- 376 (819)
Q Consensus 318 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------------------- 376 (819)
..........+|++.-..++++ .+-.+.++-.+...+.+.|+.+.|.+++++.+
T Consensus 14 q~~F~~~v~~~Dp~~l~~ll~~-----~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g 88 (360)
T PF04910_consen 14 QEQFYAAVQSHDPNALINLLQK-----NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSG 88 (360)
T ss_pred HHHHHHHHHccCHHHHHHHHHH-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC
Q ss_pred ----HcCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHhhC
Q 003449 377 ----EIGITPDVFTYTTL---LSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHG-NRGNFVEMMKVFDEINKC 448 (819)
Q Consensus 377 ----~~g~~pd~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~ 448 (819)
.-...-|...|.++ |..+.+.|-+..|.++.+-+...+..-|......+|+.|+ +.++++--+++.+.....
T Consensus 89 ~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~ 168 (360)
T PF04910_consen 89 NCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK 168 (360)
T ss_pred ccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh
Q ss_pred CCCC----CHHHHHHHHHHHHhcCCh---------------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003449 449 NCKP----DIVTWNTLLAVFGQNGMD---------------SEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAM 509 (819)
Q Consensus 449 ~~~~----~~~~~~~li~~~~~~g~~---------------~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 509 (819)
.... -+..--...-++...++. +.|.+.+.+.... -+.+...|++.+.-..+..-..
T Consensus 169 ~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~----fP~vl~~Ll~~l~~~~~~~~~~ 244 (360)
T PF04910_consen 169 CYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR----FPWVLVPLLDKLGISPDSSVSN 244 (360)
T ss_pred hhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH----hHHHHHHHHHHhccccchhhhc
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003449 510 SIYKRMLEAGVTPDLSTYNAVLAALARG 537 (819)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 537 (819)
.-.-.-...+..+.......++..|+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~ll~~lYv~R 272 (360)
T PF04910_consen 245 HPHFSPSSWSSEPPSDSLKLLTELYVER 272 (360)
T ss_pred CCCCcccccccCCchhHHHHHHHHHHHH
No 475
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=36.74 E-value=3.8e+02 Score=27.17 Aligned_cols=82 Identities=15% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003449 666 TYNTLMYMYSRSENFARAEDVLREILAKGIKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFV 741 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 741 (819)
++.--+...-..--.++...+++.+++. -|+ +..|.+++......|.+++++.+|++++..|..|=...-..++
T Consensus 105 tlsECl~Li~eGcp~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~ 182 (353)
T PF15297_consen 105 TLSECLNLIEEGCPKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLV 182 (353)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHH
Q ss_pred HHHHhcCC
Q 003449 742 ASYAADSL 749 (819)
Q Consensus 742 ~~~~~~g~ 749 (819)
..+-..+.
T Consensus 183 diL~~k~~ 190 (353)
T PF15297_consen 183 DILKMKSQ 190 (353)
T ss_pred HHHHhhhh
No 476
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=36.62 E-value=4.2e+02 Score=25.94 Aligned_cols=288 Identities=14% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHccCCHHHHHHHH----HHHhhCCCCCCHHHHH
Q 003449 390 LLSGFEKAGKDESAMKVFEEMRSAGCKPN-------ICTFNALIKMHGNRGNFVEMMKVF----DEINKCNCKPDIVTWN 458 (819)
Q Consensus 390 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~ 458 (819)
+.+-..+.+++++|+..+.++...|+..| ..+...+...|...|+...-.+.. +-|....-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHH-----HHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHH
Q 003449 459 TLLAVFGQNGM-DSEVSGVFKEMKRAGFIPERDTF-----NTLISAYSRCGSFDQAMSIYKRMLEA----GVTPDLSTYN 528 (819)
Q Consensus 459 ~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~ 528 (819)
+|+.-+-...+ .+..+.+.....+...+...... .-++..+.+.|.+.+|+.+...+... +-+++..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Q ss_pred HHH-HHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHHhCCCCCC-----HHH
Q 003449 529 AVL-AALARGGMWEQSEKIFAEMKGGR----CKPNELTYSSLLHA--YANGREIDQMLALSEEIYSGIIEPH-----AVL 596 (819)
Q Consensus 529 ~l~-~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~ 596 (819)
.+- .+|..-.+..++..-+...+... ++|....-..++.+ .|...++..|...|-+..+.....+ -..
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~s 248 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVS 248 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHH
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHH--HHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003449 597 LKTLILVYSKSDLLMDTERAFLE--LKKKGFSPDIPTLNAMISIYGRRQ--MVAKTNEILHFMNDSGFTPSLTTYNTLMY 672 (819)
Q Consensus 597 ~~~l~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 672 (819)
+..++-.-...+..++...+++. ..+.--.....+...+..++.... ++..|+.-+..-.... +.....++.+-+
T Consensus 249 LkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D-~~iRsHl~~LYD 327 (421)
T COG5159 249 LKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQD-SFIRSHLQYLYD 327 (421)
T ss_pred HHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccC-HHHHHHHHHHHH
Q ss_pred HHHhcC
Q 003449 673 MYSRSE 678 (819)
Q Consensus 673 ~~~~~g 678 (819)
.+...+
T Consensus 328 ~LLe~N 333 (421)
T COG5159 328 VLLEKN 333 (421)
T ss_pred HHHHhh
No 477
>KOG3779 consensus Homeobox transcription factor prospero [Transcription]
Probab=36.59 E-value=1.6e+02 Score=30.22 Aligned_cols=93 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCchhhhhhccCCCCCCCCCCCCcccc-----
Q 003449 3 QNLSLPLLLPTPPPAKPLFLTQTNHHNLPPPSPPQ---QQTTPSASPTTISPLLQDLYNNNSSSQPIHQPRSRTR----- 74 (819)
Q Consensus 3 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~----- 74 (819)
+-+++|..+-|||..-|.+.+...+.+..||+-|- -.+||...|+...--+.....+.-.++-....+.+..
T Consensus 437 EA~~~~~~~~~~PQ~~~~~~P~~~~~~m~~~~~~~~GG~~~PP~~~~F~~~~~~~~~~~~~~~~S~~~~~k~r~~~~~~D 516 (737)
T KOG3779|consen 437 EALPLVVRKNSSPQSASGPAPGGHHQPLHQSPLSATGGFTTPPFRHPFPLPLMAYPFQSPLGAPSGSFSGKDRASPESLD 516 (737)
T ss_pred cccCCcccCCCCcccCCCCCCCCCCccCCCCCCcccCCCcCCCccCCccchhhhccccCccCCCcccccCCcccCcchhh
Q ss_pred ----cCcCCCCCCCCCccCCcCChh
Q 003449 75 ----LGKSRDSNRGKPWSHHRLSAK 95 (819)
Q Consensus 75 ----~~~~~~~~~~~~~~~~~~~~~ 95 (819)
..+.+......+.+||+.+++
T Consensus 517 ~~~~~~S~~t~~sS~~L~~~~~~PA 541 (737)
T KOG3779|consen 517 LTRDTTSLRTKMSSHHLSHHPCSPA 541 (737)
T ss_pred hhcccccccccccCCCCcCCCCCCC
No 478
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=36.28 E-value=12 Score=37.26 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 003449 2 AQNLSLPLLLPTPPPAKPLFL 22 (819)
Q Consensus 2 ~~~~~~~~~~~~p~~~~~~~~ 22 (819)
+...+.|+||||||||+++..
T Consensus 227 ~~~~~~PpPPppPpPP~~~~~ 247 (312)
T PF01213_consen 227 ASAPAAPPPPPPPPPPPAPLF 247 (312)
T ss_dssp ---------------------
T ss_pred ccccCCCCCCCCCCccccccc
No 479
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=36.20 E-value=2.6e+02 Score=23.54 Aligned_cols=95 Identities=12% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH-HHHHH
Q 003449 136 LLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVY-AYTSL 214 (819)
Q Consensus 136 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 214 (819)
+.-+...+-..+....-..++.........+....-+.+.+..-+..-.... .+..+|..|...|+..... .|..-
T Consensus 29 I~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~---~~~~if~~l~~~~IG~~~A~fY~~w 105 (126)
T PF08311_consen 29 IKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS---DPREIFKFLYSKGIGTKLALFYEEW 105 (126)
T ss_dssp HHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS---HHHHHHHHHHHHTTSTTBHHHHHHH
T ss_pred HHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc---CHHHHHHHHHHcCccHHHHHHHHHH
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 003449 215 ITTYASNGRYREAVMVFKK 233 (819)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~ 233 (819)
...+...|++++|.++|+.
T Consensus 106 A~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 106 AEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh
No 480
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=35.26 E-value=4.9e+02 Score=26.40 Aligned_cols=151 Identities=9% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC------------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCC
Q 003449 541 EQSEKIFAEMKGGRCKPNELTYSSLLHAYANGRE------------IDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSD 608 (819)
Q Consensus 541 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 608 (819)
.+..++-+.+.+. +-|..+|..++..--..-. .+.-+.+++++++.+ +.+..+...++..+.+..
T Consensus 3 ~r~~el~~~v~~~--P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~ 79 (321)
T PF08424_consen 3 KRTAELNRRVREN--PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVW 79 (321)
T ss_pred hHHHHHHHHHHhC--cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhC
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHhhC--CCCCCH---------------HHHH
Q 003449 609 LLMDTERAFLELKKKGFSPDIPTLNAMISIYGR---RQMVAKTNEILHFMNDS--GFTPSL---------------TTYN 668 (819)
Q Consensus 609 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~--~~~p~~---------------~~~~ 668 (819)
+.++..+.++++...... +...|...++.... .-.+.....+|.+..+. +..-+. .++.
T Consensus 80 ~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~ 158 (321)
T PF08424_consen 80 DSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFL 158 (321)
T ss_pred CHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003449 669 TLMYMYSRSENFARAEDVLREILAKGI 695 (819)
Q Consensus 669 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 695 (819)
.+......+|..+.|..+++.+++.++
T Consensus 159 r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 159 RLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHCCchHHHHHHHHHHHHHHc
No 481
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=35.21 E-value=4.4e+02 Score=25.84 Aligned_cols=244 Identities=15% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCC--------CCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHHcCCHH
Q 003449 296 EEAAGVFEEMKLAG--------FSPDKVTYNALLDVYGKCRRPKEAMQVLREMKIN-GCLPSIVTYNSLISAYARDGLLE 366 (819)
Q Consensus 296 ~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~ 366 (819)
+....++..+.+.| +..|..-+|.|+.- +..++++--+-+++..+. |-.-...+|..+...|++.++.+
T Consensus 55 ~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ 132 (412)
T COG5187 55 KCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQ 132 (412)
T ss_pred hhhhHHHHHHHhccCCcccchheehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHHHc----CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHH
Q 003449 367 EAMELKTQMVEI----GITPDVF-TYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPN----ICTFNALIKMHGNRGNFVE 437 (819)
Q Consensus 367 ~A~~~~~~m~~~----g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 437 (819)
.+.+...+..+. |.+.|+. +-..|.-.|....-.++-++..+.|.++|...+ -.+|..+-.+..+ ++.+
T Consensus 133 ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~R--nFke 210 (412)
T COG5187 133 NGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRR--NFKE 210 (412)
T ss_pred hHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHH--hhHH
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--------------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003449 438 MMKVFDEINKCNCKPDIVTWNTLLAVFGQNG--------------MDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCG 503 (819)
Q Consensus 438 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------------~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 503 (819)
|-.++-+....--......|....+-..-.| +..+.+.++-.-...| +......-+-.|--.|
T Consensus 211 Aa~Ll~d~l~tF~S~El~sY~~~vrYa~~~Gl~~leR~diktki~dspevl~vi~~~e~l~---sl~~l~~SLy~cdY~~ 287 (412)
T COG5187 211 AAILLSDILPTFESSELISYSRAVRYAIFCGLLRLERRDIKTKILDSPEVLDVIGSSEKLG---SLVQLATSLYECDYGG 287 (412)
T ss_pred HHHHHHHHhccccccccccHHHHHHHHHHhhhheeehhhhhhhhcCCHHHHHhccchhhhh---hHHHHHHHHHHhccch
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003449 504 SFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMK 551 (819)
Q Consensus 504 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 551 (819)
.+.--..+|-.... +....+...+.|++.-+..---++++..+
T Consensus 288 ~F~~ll~~~~n~L~-----~d~fl~rh~d~fvREMRrrvYaQlLESYr 330 (412)
T COG5187 288 DFMNLLYLFCNSLQ-----DDVFLGRHVDLFVREMRRRVYAQLLESYR 330 (412)
T ss_pred hhHHHHHHHHhhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=35.14 E-value=67 Score=24.04 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc
Q 003449 749 LFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 749 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
++++|+.+++++.+.+ ..|++++|+.+|..+++.
T Consensus 2 ~l~kai~Lv~~A~~eD----------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDED----------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHhh----------------HhhhHHHHHHHHHHHHHH
No 483
>PRK13342 recombination factor protein RarA; Reviewed
Probab=34.84 E-value=5.8e+02 Score=27.07 Aligned_cols=170 Identities=15% Similarity=0.091 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHC---CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003449 609 LLMDTERAFLELKKK---GF-SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAE 684 (819)
Q Consensus 609 ~~~~a~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 684 (819)
..++...++...... ++ ..+......++... .|+..+++.+++.+... ...=..+...
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~----------------~~~It~~~v~ 213 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALG----------------VDSITLELLE 213 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHc----------------cCCCCHHHHH
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHH
Q 003449 685 DVLREILAKGIKPDIISYNTVIFAYCRN---GRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSL-----FVEALDV 756 (819)
Q Consensus 685 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~-----~~~A~~~ 756 (819)
++++..... ...+...+..++.++.+. ++.+.|+.++..|.+.|..|....-..+..++-.-|. ..-|...
T Consensus 214 ~~~~~~~~~-~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~ 292 (413)
T PRK13342 214 EALQKRAAR-YDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAA 292 (413)
T ss_pred HHHhhhhhc-cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHH
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 003449 757 VRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 757 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
++.....|+.--.......+-.++..-+-..+...++++.+
T Consensus 293 ~~~~~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~a~~ 333 (413)
T PRK13342 293 ADAVERIGMPEGRIALAQAVIYLALAPKSNAAYTAINAALA 333 (413)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
No 484
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.92 E-value=5.6e+02 Score=26.64 Aligned_cols=181 Identities=13% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CCCC
Q 003449 489 RDTFNTLISAYSRCGSFDQAMSIYKRMLEA--GVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGG---------RCKP 557 (819)
Q Consensus 489 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---------~~~~ 557 (819)
...+.-+.+.|..+|+++.|.+.|.+.... ..+..+..|..+|..-.-.|+|.....+..+.... .+.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHH
Q 003449 558 NELTYSSLLHAYANGREIDQMLALSEEIYSGIIE------PHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPT 631 (819)
Q Consensus 558 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 631 (819)
....+..+.....+ ++..|.+.+-........ |........+.++..-++-+--..+.....=+.+..-..-
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pq 307 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQ 307 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChH
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhC-----CCCCCHHHHHHHHH
Q 003449 632 LNAMISIYGRRQMVAKTNEILHFMNDS-----GFTPSLTTYNTLMY 672 (819)
Q Consensus 632 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~ 672 (819)
...++..+.... +...+++++++... -+.|...++-.+|.
T Consensus 308 lr~il~~fy~sk-y~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 308 LREILFKFYSSK-YASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHHHHhhhh-HHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 485
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=33.56 E-value=3.8e+02 Score=24.58 Aligned_cols=108 Identities=16% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH-HHHhcCC--HHHHHH
Q 003449 646 AKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK--GIKPDIISYNTVIF-AYCRNGR--MKEASR 720 (819)
Q Consensus 646 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~-~~~~~g~--~~~A~~ 720 (819)
++++++..++.. ++..+-.....|++++|..-++++.+. .++--...|..+.. +++.++. +-+|..
T Consensus 20 EE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~ 90 (204)
T COG2178 20 EEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATL 90 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHH
Q ss_pred HHHHHHHCCCC-------CCHHHHHHHHHH----------HHhcCChHHHHHHHHHHHH
Q 003449 721 IFSEMRDSGLV-------PDVITYNTFVAS----------YAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 721 ~~~~~~~~g~~-------p~~~~~~~l~~~----------~~~~g~~~~A~~~~~~~~~ 762 (819)
++.-+...++. |...-...++++ ..+.|+++.|...++-|.+
T Consensus 91 l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 91 LYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
No 486
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=33.52 E-value=1.3e+02 Score=35.46 Aligned_cols=86 Identities=22% Similarity=0.273 Sum_probs=0.0
Q ss_pred CCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhccCCCCCCCCCCCCcccccCc
Q 003449 6 SLPLLLPTPP--------PAKPLFLTQTNHHNLPPPSPPQQQTTPSASPTTISPLLQDLYNNNSSSQPIHQPRSRTRLGK 77 (819)
Q Consensus 6 ~~~~~~~~p~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 77 (819)
+.|.+++++| +++|+.....+...++||+|||....++++++...........+.++.......... ..
T Consensus 315 ~~~~p~~~~~~l~~~~~~s~~~~~~~~~~~~~p~pppppp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 391 (833)
T KOG1922|consen 315 SPPPPPILTPKLPALISPTPPPPPPPPNNSGGPPPPPPPPGLALPSPPPPLPPLPALKAPPPESSEGLSSAPGPQ---AQ 391 (833)
T ss_pred cCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCCCCCccccCCCCCCCCCccccCCCCCCccccccccCCC---CC
Q ss_pred CCCCCCCCCccCCcCCh
Q 003449 78 SRDSNRGKPWSHHRLSA 94 (819)
Q Consensus 78 ~~~~~~~~~~~~~~~~~ 94 (819)
.........|...+.++
T Consensus 392 p~~~lk~l~wdk~~~~~ 408 (833)
T KOG1922|consen 392 PKNKLKPLHWDKTRGSS 408 (833)
T ss_pred CCCCCCCccccccCCCC
No 487
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.33 E-value=4.6e+02 Score=26.68 Aligned_cols=117 Identities=16% Similarity=0.034 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003449 697 PDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTF--VASYAADSLFVEALDVVRYMIKQGCKPNQNTYNS 774 (819)
Q Consensus 697 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 774 (819)
+...+-..+++-+.+.|-++.|..+.+++.-.++. |...|... +.--..+|+++.|+.+..+=... ++-...++.-
T Consensus 114 ~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlv-D~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~-LkK~~S~lEf 191 (389)
T KOG0396|consen 114 PRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLV-DSDVYKRAYGIRDSLLAGELEPALSWCKEHKVE-LKKEESSLEF 191 (389)
T ss_pred HHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhH-hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-HHhccchhhh
Q ss_pred HHHH-----HHhcCcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 003449 775 IVDG-----YCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIA 815 (819)
Q Consensus 775 l~~~-----~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~ 815 (819)
-++. +++.+++.+|+.++++-...-++.-..........++
T Consensus 192 ~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~la 237 (389)
T KOG0396|consen 192 QLRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLA 237 (389)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc
No 488
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=33.22 E-value=58 Score=28.52 Aligned_cols=51 Identities=20% Similarity=0.134 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 003449 2 AQNLSLPLLLPTPPPAKPLFLTQTNHHNLPPPSPPQQQTTPSASPTTISPL 52 (819)
Q Consensus 2 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 52 (819)
+++...+.+.++...+.+.-....+.+.++|++|||+.+-.-.-.++..+.
T Consensus 158 ~~~~~a~~p~~~~k~~~~~a~~~~~~~~~pp~pppp~~p~~~t~s~s~~~~ 208 (225)
T KOG3397|consen 158 FQNAAASNPSFLSKIAQPSASSTVSASAPPPPPPPPMAPKMVTRSTSPIVD 208 (225)
T ss_pred hhccccCCCCchhhcCCcccccccCCCCCCCcccCCCCccceecCCCCCCC
No 489
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=33.16 E-value=3.3e+02 Score=23.70 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=0.0
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChHH
Q 003449 430 GNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDT--FNTLISAYSRCGSFDQ 507 (819)
Q Consensus 430 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~l~~~~~~~g~~~~ 507 (819)
++.|.+-..++.+.+... +....|.+.+..++..+ .+.++......+++..
T Consensus 5 sk~g~~~~nL~~w~~fi~---------------------------~~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~ 57 (145)
T PF13762_consen 5 SKLGNVLANLEVWKTFIN---------------------------SHLPYMQEENASQSTKTIFINCILNHLASYQNFSG 57 (145)
T ss_pred ccCcchhhhHHHHHHHHH---------------------------HHHHHhhhcccChhHHHHHHHHHHHHHHHccchHH
Q ss_pred HHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003449 508 AMSIYKRMLEA------GVTPDLSTYNAVLAALARGGM-WEQSEKIFAEMKGGRCKPNELTYSSLLHAYAN 571 (819)
Q Consensus 508 A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 571 (819)
...+++.+... |.. +...|..++.+..+..- ---+..+|.-|++.+...+..-|..++.++.+
T Consensus 58 ~v~~L~~l~~l~~~~~~~~~-~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 58 VVSILEHLHFLNTDNIIGWL-DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred HHHHHHHHHHhhHHHHhhhc-ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
No 490
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=33.05 E-value=1.3e+02 Score=31.47 Aligned_cols=130 Identities=15% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---
Q 003449 671 MYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD--- 747 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~--- 747 (819)
..-+...|++++|+..|+.++.. ..+..--...+.+++.+++....+. +....+..-.+.
T Consensus 211 gyk~~t~gKF~eA~~~Fr~iL~~----------i~l~vv~~~~E~~e~~eli~icrEY-------ilgl~iEl~Rr~l~~ 273 (422)
T PF06957_consen 211 GYKLFTAGKFEEAIEIFRSILHS----------IPLLVVESREEEDEAKELIEICREY-------ILGLSIELERRELPK 273 (422)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHH----------HHC--BSSCHHHHHHHHHHHHHHHH-------HHHHHHHHHHCTS-T
T ss_pred HHHHHhcCCHHHHHHHHHHHHHH----------hheeeecCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhccc
Q ss_pred ---CChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhh
Q 003449 748 ---SLFVEALDVVRYMIKQGCKP--NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAKK 817 (819)
Q Consensus 748 ---g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~~~ 817 (819)
.+....+++.-.+..-.++| -.-++...+...+|.+++.-|..+.+++++++|........+=|...+.+
T Consensus 274 ~~~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~e~ 348 (422)
T PF06957_consen 274 DPVEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQACER 348 (422)
T ss_dssp TTHHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHHCC
T ss_pred cchhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
No 491
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=32.91 E-value=48 Score=27.96 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=0.0
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 003449 326 KCRRPKEAMQVLREMKINGCLPSIVTYNSLISAY 359 (819)
Q Consensus 326 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 359 (819)
+.|.-.+|-.+|++|++.|.+||. |+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
No 492
>PHA03211 serine/threonine kinase US3; Provisional
Probab=32.79 E-value=50 Score=35.61 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhh
Q 003449 6 SLPLLLPTPPPAKPLFLTQTNHHNLPPPSPPQQQTTPSASPTTISPLLQ 54 (819)
Q Consensus 6 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 54 (819)
+-|+-.++..+.||++.+.+....--||+|++++|++++++.--.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (461)
T PHA03211 22 AVEPETTTRCVFPPETFYNPPRGVCFPPPPEHDPPSPHGARDEAARLCQ 70 (461)
T ss_pred cCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCchhHHHHHHH
No 493
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=32.78 E-value=5.9e+02 Score=26.51 Aligned_cols=130 Identities=7% Similarity=-0.085 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003449 669 TLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC------RNGRMKEASRIFSEMRDSGLVPDVITYNTFVA 742 (819)
Q Consensus 669 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 742 (819)
..+..+.+.+++..|.++|+++......++.......+..++ ..-++++|.+.++++.......-..+.+.-..
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~~~~ 214 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHDELE 214 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhhHHH
Q ss_pred HHHhcCChHHHHHHH---HHHHHcCCCCCHHHHHHHHHHHH--hcCcHHHHHHHHHHhhhc
Q 003449 743 SYAADSLFVEALDVV---RYMIKQGCKPNQNTYNSIVDGYC--KLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 743 ~~~~~g~~~~A~~~~---~~~~~~g~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 798 (819)
...+....-.+...- ....+....--..+...+.++.. .+|+++.|...+-+++|+
T Consensus 215 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~ 275 (380)
T TIGR02710 215 DVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALEL 275 (380)
T ss_pred HHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
No 494
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.50 E-value=8.6e+02 Score=28.33 Aligned_cols=380 Identities=11% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcC
Q 003449 284 TLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDG 363 (819)
Q Consensus 284 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 363 (819)
++|.-+.+.|-.+-|+...+.-..+ ......+|+++.|++.-..+ .+..+|..|+....++|
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~tR------------F~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qg 686 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERTR------------FELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQG 686 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcchh------------eeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhc
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003449 364 LLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFD 443 (819)
Q Consensus 364 ~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 443 (819)
+.+-|...|++.+. |..|--.|.-.|+.++-.++.+....+ +..+-......| .|++++-.++++
T Consensus 687 n~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r----~D~~~~~qnalY--l~dv~ervkIl~ 751 (1202)
T KOG0292|consen 687 NHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIR----NDATGQFQNALY--LGDVKERVKILE 751 (1202)
T ss_pred chHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhh----hhhHHHHHHHHH--hccHHHHHHHHH
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHH
Q 003449 444 EINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA-----GFIPERDTFNTLISAYSRCGSF--DQAMSIYKRML 516 (819)
Q Consensus 444 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~ 516 (819)
..-... .--..-..+|.-++|.++.++.... ...|+......=.-...-.+=+ +....+|+...
T Consensus 752 n~g~~~---------laylta~~~G~~~~ae~l~ee~~~~~~~lP~~~~~a~ll~pP~p~~~l~nwPLl~~s~~~fe~~~ 822 (1202)
T KOG0292|consen 752 NGGQLP---------LAYLTAAAHGLEDQAEKLGEELEKQVPSLPEVDPNASLLQPPVPIMPLENWPLLSVSKGTFEGAL 822 (1202)
T ss_pred hcCccc---------HHHHHHhhcCcHHHHHHHHHhhccccCCCCCCCCcccccCCCCccccccCCchhhhhhhhhhHhh
Q ss_pred HCCCCCCHHH---------------------------------------HHH----------------------------
Q 003449 517 EAGVTPDLST---------------------------------------YNA---------------------------- 529 (819)
Q Consensus 517 ~~~~~~~~~~---------------------------------------~~~---------------------------- 529 (819)
.......... |..
T Consensus 823 ~~~~~~~av~~~~e~~~g~e~~~~e~~l~ed~~~~~d~~g~~~~dE~~gWdv~d~~l~pe~~~~~~~~~~~~~~p~~~~~ 902 (1202)
T KOG0292|consen 823 LSRSSSLAVDRDDEGDWGEEGWDVELMLGEDGILFNDGAGEVGEDEGGGWDVGDLDLPPEEDTPKGADDGEFVVPAQGMS 902 (1202)
T ss_pred hhhcccCcccccccccccccchhhhhccccccccccccccccCcccccCcCcccccCCccccccccccccceecCCCCCc
Q ss_pred ---------HHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCC--------------HHHH-------
Q 003449 530 ---------VLAALARGGMWEQSEKIFAEMKGGR-CKPNELTYSSLLHAYANGRE--------------IDQM------- 578 (819)
Q Consensus 530 ---------l~~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~--------------~~~a------- 578 (819)
|..-....|.++.|.+++.+-.... +.|-...+..+..+....-+ +.+.
T Consensus 903 ~~~W~~nS~L~adhvaAGsf~tA~~lL~dqvgvv~f~p~Kt~fl~iy~~sR~~l~~~~~~~~~~~~~R~~se~~~~~~~P 982 (1202)
T KOG0292|consen 903 VSIWSNNSPLAADHVAAGSFETAMRLLHDQVGVVNFGPLKTHFLKIYAGSRTYLRATPCLPVSLYPVRNWSETSSKQGLP 982 (1202)
T ss_pred chhccccCcchhhhhhcCchHHHHHHHHhhhcceecccHHhhhhhhccccceeccCCCCcccccccccccccchhhccCC
Q ss_pred -----HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH------CCCCCCHHHHHHHHHHH--------
Q 003449 579 -----LALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKK------KGFSPDIPTLNAMISIY-------- 639 (819)
Q Consensus 579 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~l~~~~-------- 639 (819)
+....+.++.+ .-....|.+.+|.+.|+.++- ..-..+..-...++..+
T Consensus 983 ~v~~~l~~l~~kl~~g------------y~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~ 1050 (1202)
T KOG0292|consen 983 AVGFKLSQLNKKLQKG------------YKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLS 1050 (1202)
T ss_pred cccccHHHHHHHHHHH------------HhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhhe
Q ss_pred -------HhcCChHHHHHHHHHHhhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003449 640 -------GRRQMVAKTNEILHFMNDSGFTPSLTT--YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC 710 (819)
Q Consensus 640 -------~~~~~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 710 (819)
...+..+.+.++-.-.....+.|-..+ ..+.+..+.+.+++..|..+-.++++.+..|....-...+...+
T Consensus 1051 ~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~ 1130 (1202)
T KOG0292|consen 1051 VELERRKLKKPNLEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAA 1130 (1202)
T ss_pred eeeeecccCCchHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q ss_pred hcCCHHH
Q 003449 711 RNGRMKE 717 (819)
Q Consensus 711 ~~g~~~~ 717 (819)
...-.|+
T Consensus 1131 eknp~Da 1137 (1202)
T KOG0292|consen 1131 EKNPTDA 1137 (1202)
T ss_pred hcCcccc
No 495
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=32.28 E-value=5.6e+02 Score=31.14 Aligned_cols=158 Identities=11% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHcCCCHHHHHH------HHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHH-------HHHHHCCCCCCHhhHH
Q 003449 287 SCCRRGSLHEEAAG------VFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVL-------REMKINGCLPSIVTYN 353 (819)
Q Consensus 287 ~~~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-------~~~~~~g~~~~~~~~~ 353 (819)
......|.+.+|.+ ++...-..-.+.....|..|...+.+.|+.++|...- +++.......+...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCCH
Q 003449 354 SLISAYARDGLLEEAMELKTQMVEI-------GITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAG-------CKPNI 419 (819)
Q Consensus 354 ~li~~~~~~g~~~~A~~~~~~m~~~-------g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~ 419 (819)
.+.-.....+....|+..+.+.+.. ..+|...+++.+-..+...++.+.|.+..+.+.+.. --.+.
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHH
Q 003449 420 CTFNALIKMHGNRGNFVEMMKVFDE 444 (819)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~A~~~~~~ 444 (819)
.++..+.+.+...+++..|....+.
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHhh
No 496
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=31.92 E-value=3.1e+02 Score=23.10 Aligned_cols=75 Identities=8% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003449 715 MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVN 793 (819)
Q Consensus 715 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 793 (819)
++++.+.|..... ...|+.-....+.---..++ +.++|+.|...|+-- -+..|...+..+-..|++.+|.++++
T Consensus 49 Lerc~~~f~~~~~--YknD~RyLkiWi~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 49 LERCIRYFEDDER--YKNDPRYLKIWLKYADNCDE---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHhhhhhh--hcCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q ss_pred H
Q 003449 794 N 794 (819)
Q Consensus 794 ~ 794 (819)
.
T Consensus 124 ~ 124 (125)
T smart00777 124 L 124 (125)
T ss_pred c
No 497
>PRK10941 hypothetical protein; Provisional
Probab=31.75 E-value=5.1e+02 Score=25.48 Aligned_cols=85 Identities=14% Similarity=-0.000 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003449 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 777 (819)
....+.+-.+|.+.++++.|+++.+.+...... |+.-+.--+-.|.+.|.+..|..=++..++.--.. +.......+.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q ss_pred HHHhcCc
Q 003449 778 GYCKLNQ 784 (819)
Q Consensus 778 ~~~~~g~ 784 (819)
.+.....
T Consensus 260 ~l~~~~~ 266 (269)
T PRK10941 260 SIEQKQI 266 (269)
T ss_pred HHhhcCc
No 498
>KOG4425 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.50 E-value=50 Score=33.87 Aligned_cols=48 Identities=27% Similarity=0.424 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhh
Q 003449 8 PLLLPTPPPAKP---------LFLTQTNHHNLPPPSPPQQQTTPSASPTTISPLLQD 55 (819)
Q Consensus 8 ~~~~~~p~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 55 (819)
.+.|.|.||++| |--.+-.....-|++||...|..+--|.+..|++..
T Consensus 60 spspsp~pp~~pettltpivlp~kkqriek~k~~~ppp~~ap~tshtp~pve~llsr 116 (900)
T KOG4425|consen 60 SPSPSPEPPLAPETTLTPIVLPHKKQRIEKHKGPLPPPNAAPTTSHTPGPVEPLLSR 116 (900)
T ss_pred CCCCCCCCCCCCccccCccccchhhhHhhcCCCCCCCCccCCccCCCCCchHHHHhh
No 499
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=31.40 E-value=2.9e+02 Score=22.50 Aligned_cols=77 Identities=19% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003449 331 KEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEM 410 (819)
Q Consensus 331 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~ 410 (819)
++|..+.+.+...+. -....--+-+..+...|+|++| -..-.....||...|..|... +.|..+++...+.++
T Consensus 23 ~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A----Ll~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 23 QEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA----LLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTRL 95 (116)
T ss_dssp HHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH----HHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH----HHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHHH
Q ss_pred HHCC
Q 003449 411 RSAG 414 (819)
Q Consensus 411 ~~~~ 414 (819)
..+|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
No 500
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.24 E-value=5.1e+02 Score=28.23 Aligned_cols=130 Identities=16% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 003449 355 LISAYARDGLLEEAMELKTQMVEIGITPDVF-TYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRG 433 (819)
Q Consensus 355 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 433 (819)
++.-|.+.+++++|..++..|.-.-....-. ..+.+++.+.+..--++....++.+...=..|....-.....-|.. .
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d-~ 492 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD-P 492 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH-H
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003449 434 NFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMS 510 (819)
Q Consensus 434 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 510 (819)
=.+-|++.|..+...+ ++++|..+--++- +.+.|.-+-......|+...|..
T Consensus 493 V~~~aRRfFhhLLR~~-------------------rfekAFlLAvdi~------~~DLFmdlh~~A~~~ge~~La~~ 544 (545)
T PF11768_consen 493 VSDLARRFFHHLLRYQ-------------------RFEKAFLLAVDIG------DRDLFMDLHYLAKDKGELALAEV 544 (545)
T ss_pred HHHHHHHHHHHHHHhh-------------------HHHHHHHHHHhcc------chHHHHHHHHHHHhccchhhhhc
Done!