Query 003449
Match_columns 819
No_of_seqs 788 out of 4111
Neff 11.3
Searched_HMMs 29240
Date Tue Mar 26 01:35:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003449.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003449hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.2E-39 4.1E-44 366.9 42.4 513 183-803 63-584 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.2E-39 4E-44 367.0 41.8 474 277-816 82-562 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.6E-26 8.7E-31 242.7 49.0 362 395-802 10-372 (388)
4 4g26_A Pentatricopeptide repea 100.0 2.7E-29 9.3E-34 268.4 26.1 207 190-396 7-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-26 7.6E-31 243.2 46.8 342 463-815 8-350 (388)
6 4g26_A Pentatricopeptide repea 100.0 5.1E-29 1.7E-33 266.2 26.2 205 226-431 8-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.6E-24 5.3E-29 238.8 37.2 455 315-806 7-486 (514)
8 2gw1_A Mitochondrial precursor 99.9 1E-22 3.6E-27 224.2 41.3 460 278-775 5-489 (514)
9 3fp2_A TPR repeat-containing p 99.9 3.1E-22 1E-26 221.7 40.2 442 314-805 25-498 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 1.4E-21 4.9E-26 211.0 39.7 351 418-802 25-414 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 3.6E-21 1.2E-25 207.8 37.9 333 438-805 11-365 (450)
12 3fp2_A TPR repeat-containing p 99.9 5.1E-21 1.7E-25 211.9 40.0 439 278-763 24-491 (537)
13 1xi4_A Clathrin heavy chain; a 99.9 2.5E-16 8.5E-21 177.3 66.2 570 133-790 985-1584(1630)
14 2xm6_A Protein corresponding t 99.9 1.1E-17 3.9E-22 181.7 52.4 377 397-805 56-474 (490)
15 3ieg_A DNAJ homolog subfamily 99.9 5E-19 1.7E-23 184.5 39.8 320 453-805 2-342 (359)
16 1xi4_A Clathrin heavy chain; a 99.9 5.2E-16 1.8E-20 174.8 65.4 547 172-798 984-1560(1630)
17 2xm6_A Protein corresponding t 99.9 2.8E-17 9.7E-22 178.6 52.5 366 403-801 26-435 (490)
18 3ieg_A DNAJ homolog subfamily 99.9 4E-18 1.4E-22 177.7 41.0 333 418-782 2-353 (359)
19 3hym_B Cell division cycle pro 99.8 3.6E-18 1.2E-22 175.7 29.8 271 527-804 25-305 (330)
20 2ooe_A Cleavage stimulation fa 99.8 2.9E-16 1E-20 172.5 46.6 433 337-801 2-495 (530)
21 3hym_B Cell division cycle pro 99.8 8.5E-18 2.9E-22 172.9 31.6 292 487-786 20-322 (330)
22 2ooe_A Cleavage stimulation fa 99.8 9.4E-16 3.2E-20 168.4 46.6 218 542-763 256-492 (530)
23 1fch_A Peroxisomal targeting s 99.8 6.7E-18 2.3E-22 176.7 24.9 262 527-797 67-358 (368)
24 4g1t_A Interferon-induced prot 99.8 2.6E-16 8.8E-21 170.8 35.0 389 383-805 50-466 (472)
25 4eqf_A PEX5-related protein; a 99.8 1.4E-17 4.9E-22 173.9 20.5 263 527-797 68-355 (365)
26 1fch_A Peroxisomal targeting s 99.8 5.9E-17 2E-21 169.4 24.1 309 428-762 34-358 (368)
27 3mkr_A Coatomer subunit epsilo 99.8 3.1E-16 1.1E-20 156.4 27.3 254 535-805 10-271 (291)
28 1b89_A Protein (clathrin heavy 99.8 2.1E-16 7.3E-21 159.9 25.8 239 220-501 15-253 (449)
29 4eqf_A PEX5-related protein; a 99.7 6E-17 2.1E-21 169.1 21.5 267 490-760 66-353 (365)
30 3cv0_A Peroxisome targeting si 99.7 2.7E-16 9.4E-21 161.3 25.7 283 490-800 22-317 (327)
31 1b89_A Protein (clathrin heavy 99.7 9E-16 3.1E-20 155.3 27.0 282 326-651 15-304 (449)
32 3mkr_A Coatomer subunit epsilo 99.7 1.3E-15 4.3E-20 152.0 27.9 277 497-792 7-288 (291)
33 4g1t_A Interferon-induced prot 99.7 4.5E-15 1.5E-19 161.0 33.9 347 385-764 95-460 (472)
34 3spa_A Mtrpol, DNA-directed RN 99.7 9.8E-18 3.4E-22 182.8 10.7 118 279-396 127-248 (1134)
35 3cv0_A Peroxisome targeting si 99.7 1.5E-15 5.2E-20 155.7 26.6 282 453-762 20-314 (327)
36 3spa_A Mtrpol, DNA-directed RN 99.7 1.9E-17 6.4E-22 180.6 10.3 120 207-327 126-249 (1134)
37 2pl2_A Hypothetical conserved 99.7 1.1E-14 3.8E-19 138.5 22.2 198 592-796 3-212 (217)
38 1ouv_A Conserved hypothetical 99.7 1.4E-13 4.8E-18 136.7 31.1 231 558-806 5-259 (273)
39 3uq3_A Heat shock protein STI1 99.7 1.6E-14 5.5E-19 142.2 23.8 223 562-799 8-237 (258)
40 3e4b_A ALGK; tetratricopeptide 99.7 1.5E-14 5E-19 154.4 24.8 220 561-797 178-420 (452)
41 3e4b_A ALGK; tetratricopeptide 99.6 4.2E-14 1.5E-18 150.8 25.6 266 473-762 128-420 (452)
42 3u4t_A TPR repeat-containing p 99.6 6.9E-14 2.4E-18 139.0 24.5 237 564-805 8-257 (272)
43 3uq3_A Heat shock protein STI1 99.6 6.6E-14 2.3E-18 137.8 24.0 223 527-763 8-236 (258)
44 2h6f_A Protein farnesyltransfe 99.6 1.1E-13 3.6E-18 142.6 26.0 245 561-815 99-364 (382)
45 2ho1_A Type 4 fimbrial biogene 99.6 4.1E-13 1.4E-17 131.6 26.6 207 594-805 37-245 (252)
46 2q7f_A YRRB protein; TPR, prot 99.6 1.1E-13 3.8E-18 134.8 21.8 209 594-807 23-231 (243)
47 4e6h_A MRNA 3'-END-processing 99.6 5E-11 1.7E-15 131.0 45.0 449 330-805 48-577 (679)
48 2pl2_A Hypothetical conserved 99.6 1.8E-13 6.1E-18 130.2 22.2 197 558-761 4-212 (217)
49 1ouv_A Conserved hypothetical 99.6 5E-12 1.7E-16 125.4 32.8 224 523-764 5-252 (273)
50 2vq2_A PILW, putative fimbrial 99.6 1.4E-12 4.6E-17 125.2 27.3 210 593-805 7-218 (225)
51 3u4t_A TPR repeat-containing p 99.6 5.7E-13 1.9E-17 132.3 25.0 248 528-781 7-267 (272)
52 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.3E-13 1.1E-17 134.3 22.7 247 536-792 17-269 (275)
53 2h6f_A Protein farnesyltransfe 99.6 6.6E-13 2.3E-17 136.7 25.2 248 525-781 98-365 (382)
54 3vtx_A MAMA; tetratricopeptide 99.5 6.3E-13 2.2E-17 122.9 21.0 170 628-802 4-174 (184)
55 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.4E-13 1.5E-17 133.4 21.2 229 570-806 16-252 (275)
56 4e6h_A MRNA 3'-END-processing 99.5 1.4E-10 4.8E-15 127.5 41.7 454 296-779 49-584 (679)
57 4a1s_A PINS, partner of inscut 99.5 1.5E-13 5.1E-18 145.9 17.1 281 491-803 50-377 (411)
58 2q7f_A YRRB protein; TPR, prot 99.5 1E-12 3.5E-17 127.8 21.4 210 561-777 25-235 (243)
59 2ho1_A Type 4 fimbrial biogene 99.5 8.3E-12 2.9E-16 122.2 26.3 202 562-769 40-242 (252)
60 3sf4_A G-protein-signaling mod 99.5 1.2E-12 4.2E-17 138.5 21.0 282 488-801 8-339 (406)
61 3sf4_A G-protein-signaling mod 99.5 6.1E-13 2.1E-17 140.9 18.3 305 451-787 6-365 (406)
62 2vq2_A PILW, putative fimbrial 99.5 3.1E-11 1.1E-15 115.6 28.5 201 208-412 8-210 (225)
63 3ro2_A PINS homolog, G-protein 99.5 6.3E-13 2.2E-17 136.6 17.6 279 492-802 8-336 (338)
64 4abn_A Tetratricopeptide repea 99.5 3.1E-12 1.1E-16 137.3 22.6 212 575-795 84-318 (474)
65 2ond_A Cleavage stimulation fa 99.5 5E-11 1.7E-15 120.3 30.1 223 576-803 33-275 (308)
66 4a1s_A PINS, partner of inscut 99.4 1E-12 3.6E-17 139.3 16.9 279 454-763 48-372 (411)
67 3ulq_A Response regulator aspa 99.4 8.5E-12 2.9E-16 130.7 23.1 232 566-800 110-370 (383)
68 3vtx_A MAMA; tetratricopeptide 99.4 3.2E-11 1.1E-15 111.3 22.6 171 593-769 4-174 (184)
69 2ond_A Cleavage stimulation fa 99.4 2.4E-10 8.1E-15 115.3 29.1 219 541-763 33-270 (308)
70 4abn_A Tetratricopeptide repea 99.4 2E-11 6.9E-16 131.0 21.4 189 610-805 84-294 (474)
71 3nf1_A KLC 1, kinesin light ch 99.4 1.2E-11 4.2E-16 125.3 18.7 242 558-801 26-310 (311)
72 3ro2_A PINS homolog, G-protein 99.4 1E-11 3.4E-16 127.6 17.6 275 176-483 8-332 (338)
73 3ulq_A Response regulator aspa 99.4 4E-11 1.4E-15 125.5 22.5 230 530-762 109-367 (383)
74 3as5_A MAMA; tetratricopeptide 99.4 3.6E-11 1.2E-15 111.1 19.8 171 630-804 9-179 (186)
75 4i17_A Hypothetical protein; T 99.4 7.6E-11 2.6E-15 113.2 22.0 202 592-805 5-216 (228)
76 4gyw_A UDP-N-acetylglucosamine 99.3 2.2E-11 7.7E-16 135.6 19.7 167 628-800 8-176 (723)
77 3q15_A PSP28, response regulat 99.3 8.6E-11 3E-15 122.7 22.0 227 568-798 110-365 (378)
78 1hz4_A MALT regulatory protein 99.3 1.7E-09 5.8E-14 112.7 30.6 233 565-805 99-356 (373)
79 1hz4_A MALT regulatory protein 99.3 1.4E-09 4.7E-14 113.4 28.1 268 533-800 23-324 (373)
80 3nf1_A KLC 1, kinesin light ch 99.3 2.4E-10 8.4E-15 115.6 19.7 242 170-413 24-307 (311)
81 4i17_A Hypothetical protein; T 99.3 7.7E-10 2.6E-14 106.1 22.2 208 556-777 4-222 (228)
82 3q15_A PSP28, response regulat 99.2 1.1E-09 3.7E-14 114.2 24.3 228 531-762 108-364 (378)
83 4gyw_A UDP-N-acetylglucosamine 99.2 5.1E-10 1.7E-14 124.7 21.3 166 592-762 7-173 (723)
84 3as5_A MAMA; tetratricopeptide 99.2 1.9E-09 6.4E-14 99.4 20.3 165 595-763 9-173 (186)
85 3urz_A Uncharacterized protein 99.2 6.1E-10 2.1E-14 104.7 16.9 131 668-803 58-191 (208)
86 3qky_A Outer membrane assembly 99.2 2.6E-09 8.9E-14 104.8 22.0 67 737-805 151-231 (261)
87 1qqe_A Vesicular transport pro 99.2 3.4E-10 1.2E-14 113.0 15.9 198 603-802 46-273 (292)
88 3edt_B KLC 2, kinesin light ch 99.2 4.7E-10 1.6E-14 111.7 16.6 227 570-798 12-281 (283)
89 3rjv_A Putative SEL1 repeat pr 99.2 3.1E-09 1E-13 100.2 20.4 187 612-810 4-209 (212)
90 3mv2_B Coatomer subunit epsilo 99.1 9.1E-09 3.1E-13 99.8 23.8 186 613-805 85-289 (310)
91 2fo7_A Synthetic consensus TPR 99.1 4E-09 1.4E-13 91.1 18.5 134 666-802 3-136 (136)
92 4ga2_A E3 SUMO-protein ligase 99.1 4.2E-10 1.4E-14 99.3 10.8 130 670-805 3-136 (150)
93 1qqe_A Vesicular transport pro 99.1 2.3E-09 8E-14 106.9 17.3 182 609-805 32-235 (292)
94 3edt_B KLC 2, kinesin light ch 99.1 1.3E-09 4.5E-14 108.4 15.5 227 535-762 12-280 (283)
95 3mv2_B Coatomer subunit epsilo 99.1 5.4E-08 1.9E-12 94.4 24.7 184 578-770 85-287 (310)
96 3qky_A Outer membrane assembly 99.0 9.1E-09 3.1E-13 100.9 19.0 189 596-788 17-251 (261)
97 2pzi_A Probable serine/threoni 99.0 3.1E-09 1.1E-13 119.4 16.8 173 605-784 402-583 (681)
98 3urz_A Uncharacterized protein 99.0 8.3E-09 2.8E-13 96.9 17.2 138 634-777 59-198 (208)
99 4ga2_A E3 SUMO-protein ligase 99.0 1.1E-09 3.7E-14 96.6 10.2 144 635-784 3-149 (150)
100 3dra_A Protein farnesyltransfe 99.0 8.3E-08 2.8E-12 94.4 24.2 222 576-802 50-292 (306)
101 4gco_A Protein STI-1; structur 99.0 5.8E-09 2E-13 88.5 13.8 109 695-806 8-118 (126)
102 2pzi_A Probable serine/threoni 99.0 2.5E-09 8.5E-14 120.2 14.8 163 640-809 402-574 (681)
103 2uy1_A Cleavage stimulation fa 99.0 5.1E-07 1.8E-11 96.4 31.9 378 361-797 6-412 (493)
104 2vsy_A XCC0866; transferase, g 99.0 9.5E-09 3.3E-13 113.6 19.1 155 643-802 3-161 (568)
105 2yhc_A BAMD, UPF0169 lipoprote 99.0 2.5E-08 8.6E-13 95.0 19.6 188 594-804 4-219 (225)
106 2uy1_A Cleavage stimulation fa 99.0 1E-06 3.5E-11 94.1 34.0 125 630-762 287-412 (493)
107 2ifu_A Gamma-SNAP; membrane fu 99.0 5.8E-09 2E-13 104.9 15.0 224 536-790 3-253 (307)
108 1hh8_A P67PHOX, NCF-2, neutrop 99.0 2.8E-08 9.5E-13 93.9 18.6 90 633-727 10-99 (213)
109 2fo7_A Synthetic consensus TPR 98.9 4.6E-08 1.6E-12 84.3 17.6 130 631-763 3-132 (136)
110 3gyz_A Chaperone protein IPGC; 98.9 2.8E-08 9.6E-13 86.9 15.9 101 699-803 36-138 (151)
111 3dra_A Protein farnesyltransfe 98.9 6.4E-07 2.2E-11 88.1 27.0 231 541-777 50-301 (306)
112 3rjv_A Putative SEL1 repeat pr 98.9 1.1E-07 3.9E-12 89.3 20.9 175 578-764 5-198 (212)
113 2r5s_A Uncharacterized protein 98.9 1.3E-08 4.3E-13 92.8 13.6 161 632-797 9-172 (176)
114 3qou_A Protein YBBN; thioredox 98.9 2.6E-08 8.9E-13 98.8 16.5 164 628-797 116-283 (287)
115 2qfc_A PLCR protein; TPR, HTH, 98.9 2.7E-07 9.2E-12 92.0 23.4 168 631-799 77-267 (293)
116 3u3w_A Transcriptional activat 98.9 6.2E-07 2.1E-11 89.4 24.6 165 634-798 80-266 (293)
117 4f3v_A ESX-1 secretion system 98.8 1.2E-07 4.1E-12 90.7 17.7 197 606-810 18-247 (282)
118 2vgx_A Chaperone SYCD; alterna 98.8 9.5E-09 3.2E-13 90.2 9.2 114 686-804 9-124 (148)
119 2ifu_A Gamma-SNAP; membrane fu 98.8 5.3E-08 1.8E-12 97.9 15.8 224 501-755 3-253 (307)
120 2yhc_A BAMD, UPF0169 lipoprote 98.8 3.3E-07 1.1E-11 87.2 19.6 185 558-763 3-213 (225)
121 2r5s_A Uncharacterized protein 98.8 6.2E-08 2.1E-12 88.1 13.7 161 598-762 10-172 (176)
122 3qou_A Protein YBBN; thioredox 98.8 1.3E-07 4.3E-12 93.9 16.8 168 591-762 114-283 (287)
123 3sz7_A HSC70 cochaperone (SGT) 98.8 8E-08 2.7E-12 86.2 14.0 109 699-810 11-120 (164)
124 4gco_A Protein STI-1; structur 98.8 1.7E-07 5.7E-12 79.4 15.0 110 665-778 14-124 (126)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.8 4.8E-07 1.7E-11 85.2 19.2 141 667-814 9-166 (213)
126 2vsy_A XCC0866; transferase, g 98.8 2.8E-07 9.6E-12 101.7 19.9 153 608-764 3-158 (568)
127 2e2e_A Formate-dependent nitri 98.7 8.6E-08 3E-12 87.3 13.1 126 675-804 21-150 (177)
128 1a17_A Serine/threonine protei 98.7 4.6E-07 1.6E-11 81.3 16.8 130 665-798 14-146 (166)
129 3dss_A Geranylgeranyl transfer 98.7 9.9E-06 3.4E-10 80.0 27.0 195 610-812 90-317 (331)
130 3u3w_A Transcriptional activat 98.7 7E-06 2.4E-10 81.6 25.7 163 600-762 81-265 (293)
131 1hxi_A PEX5, peroxisome target 98.7 1.9E-07 6.4E-12 78.5 11.7 99 701-803 19-119 (121)
132 3q7a_A Farnesyltransferase alp 98.7 5.4E-06 1.8E-10 82.2 23.9 221 576-801 71-335 (349)
133 2xcb_A PCRH, regulatory protei 98.7 1.5E-07 5.1E-12 82.0 11.5 103 699-804 18-121 (142)
134 3upv_A Heat shock protein STI1 98.7 4.2E-07 1.4E-11 77.2 14.0 98 699-799 4-102 (126)
135 3gw4_A Uncharacterized protein 98.7 2.3E-07 7.8E-12 86.7 13.4 160 641-801 4-179 (203)
136 2qfc_A PLCR protein; TPR, HTH, 98.6 3.7E-06 1.3E-10 83.7 22.3 164 599-762 80-265 (293)
137 3gyz_A Chaperone protein IPGC; 98.6 6.6E-07 2.3E-11 78.1 14.5 104 663-770 35-138 (151)
138 1p5q_A FKBP52, FK506-binding p 98.6 6.5E-07 2.2E-11 90.9 16.8 131 664-797 147-293 (336)
139 3q49_B STIP1 homology and U bo 98.6 5.1E-07 1.7E-11 78.0 13.8 101 698-801 8-109 (137)
140 2c2l_A CHIP, carboxy terminus 98.6 2.6E-07 8.8E-12 91.2 12.9 196 593-800 3-201 (281)
141 4gcn_A Protein STI-1; structur 98.6 3.1E-07 1.1E-11 77.9 11.6 100 699-802 8-116 (127)
142 1elw_A TPR1-domain of HOP; HOP 98.6 8.9E-07 3E-11 73.8 13.9 104 699-805 4-108 (118)
143 2hr2_A Hypothetical protein; a 98.6 2.1E-07 7.1E-12 80.0 9.8 103 701-805 13-138 (159)
144 3q7a_A Farnesyltransferase alp 98.6 1.8E-05 6.3E-10 78.5 25.2 231 541-777 71-345 (349)
145 2lni_A Stress-induced-phosphop 98.6 8.8E-07 3E-11 75.9 14.0 103 699-804 16-119 (133)
146 2lni_A Stress-induced-phosphop 98.6 6.7E-07 2.3E-11 76.6 13.2 120 661-784 13-133 (133)
147 1na0_A Designed protein CTPR3; 98.6 1.1E-06 3.7E-11 74.2 14.3 104 699-804 9-112 (125)
148 2vyi_A SGTA protein; chaperone 98.6 1.2E-06 4.2E-11 74.6 14.8 114 667-784 15-129 (131)
149 1na0_A Designed protein CTPR3; 98.6 2E-06 6.7E-11 72.5 15.9 116 664-783 9-125 (125)
150 2kck_A TPR repeat; tetratricop 98.6 9.1E-07 3.1E-11 73.0 12.9 103 698-803 5-111 (112)
151 3dss_A Geranylgeranyl transfer 98.6 1.8E-05 6.1E-10 78.2 23.9 155 645-804 90-273 (331)
152 2dba_A Smooth muscle cell asso 98.6 1.3E-06 4.5E-11 76.5 14.4 104 698-805 27-135 (148)
153 4gcn_A Protein STI-1; structur 98.5 9.7E-07 3.3E-11 74.8 12.9 108 665-775 9-122 (127)
154 1a17_A Serine/threonine protei 98.5 3.2E-06 1.1E-10 75.6 16.8 130 630-762 14-145 (166)
155 4f3v_A ESX-1 secretion system 98.5 3.1E-06 1.1E-10 81.0 17.0 140 631-775 104-247 (282)
156 3gw4_A Uncharacterized protein 98.5 2.3E-06 7.9E-11 79.7 16.2 156 606-762 4-175 (203)
157 3rkv_A Putative peptidylprolyl 98.5 7.3E-07 2.5E-11 79.6 12.0 103 701-805 13-133 (162)
158 2vgx_A Chaperone SYCD; alterna 98.5 5.2E-07 1.8E-11 78.9 10.6 110 651-763 9-118 (148)
159 2vyi_A SGTA protein; chaperone 98.5 1.9E-06 6.3E-11 73.5 13.8 106 698-806 11-117 (131)
160 2e2e_A Formate-dependent nitri 98.5 1.2E-06 4.1E-11 79.6 12.9 121 640-763 21-144 (177)
161 3upv_A Heat shock protein STI1 98.5 2.7E-06 9.1E-11 72.1 13.6 98 664-763 4-101 (126)
162 2c2l_A CHIP, carboxy terminus 98.5 1.3E-06 4.3E-11 86.2 13.1 166 628-803 3-169 (281)
163 2fbn_A 70 kDa peptidylprolyl i 98.5 2.9E-06 1E-10 78.7 14.9 131 665-799 39-187 (198)
164 3k9i_A BH0479 protein; putativ 98.5 2.6E-07 8.8E-12 77.2 6.7 102 711-814 2-107 (117)
165 2xev_A YBGF; tetratricopeptide 98.4 1.9E-06 6.5E-11 73.3 12.4 101 702-805 5-112 (129)
166 2fbn_A 70 kDa peptidylprolyl i 98.4 3.7E-07 1.3E-11 84.9 8.0 132 671-805 11-158 (198)
167 1elw_A TPR1-domain of HOP; HOP 98.4 1E-05 3.5E-10 67.2 15.6 111 664-778 4-115 (118)
168 2xcb_A PCRH, regulatory protei 98.4 3.7E-06 1.3E-10 72.9 13.0 97 665-763 19-115 (142)
169 1elr_A TPR2A-domain of HOP; HO 98.4 3E-06 1E-10 72.1 12.0 99 701-800 6-110 (131)
170 3ro3_A PINS homolog, G-protein 98.4 1.9E-06 6.3E-11 76.8 10.9 136 666-801 11-161 (164)
171 1elr_A TPR2A-domain of HOP; HO 98.4 7.9E-06 2.7E-10 69.4 14.4 115 664-781 4-124 (131)
172 3q49_B STIP1 homology and U bo 98.4 6.2E-06 2.1E-10 70.9 13.7 101 661-763 6-106 (137)
173 1dce_A Protein (RAB geranylger 98.4 2.2E-05 7.4E-10 85.2 20.7 162 642-808 42-231 (567)
174 3sz7_A HSC70 cochaperone (SGT) 98.4 6E-06 2.1E-10 73.8 13.7 99 663-763 10-108 (164)
175 2dba_A Smooth muscle cell asso 98.3 1.5E-05 5.1E-10 69.5 15.9 113 662-779 26-143 (148)
176 1p5q_A FKBP52, FK506-binding p 98.3 1.1E-05 3.9E-10 81.7 16.7 130 629-762 147-293 (336)
177 1wao_1 Serine/threonine protei 98.3 1.7E-06 5.8E-11 92.3 10.7 127 671-801 13-153 (477)
178 2if4_A ATFKBP42; FKBP-like, al 98.3 1.2E-06 4E-11 89.0 8.9 154 629-805 179-335 (338)
179 1dce_A Protein (RAB geranylger 98.3 5.9E-06 2E-10 89.7 13.6 187 609-801 44-270 (567)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 1.1E-05 3.7E-10 85.8 15.3 128 666-796 270-413 (457)
181 1zu2_A Mitochondrial import re 98.2 4.3E-06 1.5E-10 71.7 8.5 95 713-812 16-132 (158)
182 1hxi_A PEX5, peroxisome target 98.2 1.2E-05 4.1E-10 67.2 11.3 93 667-762 20-113 (121)
183 4b4t_Q 26S proteasome regulato 98.2 8.8E-05 3E-09 78.6 20.5 123 675-797 106-244 (434)
184 1ihg_A Cyclophilin 40; ppiase 98.2 1.8E-05 6.1E-10 81.2 14.2 120 667-790 226-362 (370)
185 1klx_A Cysteine rich protein B 98.2 2.1E-05 7.1E-10 67.5 12.5 112 678-800 9-128 (138)
186 2kck_A TPR repeat; tetratricop 98.2 1.8E-05 6.2E-10 64.9 11.4 97 664-763 6-106 (112)
187 3rkv_A Putative peptidylprolyl 98.1 1.8E-05 6.3E-10 70.4 12.1 110 666-778 13-141 (162)
188 4b4t_Q 26S proteasome regulato 98.1 9.1E-05 3.1E-09 78.4 19.3 56 531-586 11-82 (434)
189 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 1.3E-05 4.3E-10 85.2 12.3 124 678-806 248-388 (457)
190 2xev_A YBGF; tetratricopeptide 98.1 5.5E-05 1.9E-09 64.0 14.2 96 668-768 6-108 (129)
191 1ihg_A Cyclophilin 40; ppiase 98.1 1.7E-05 5.9E-10 81.3 12.2 104 700-805 224-343 (370)
192 2if4_A ATFKBP42; FKBP-like, al 98.1 9.7E-06 3.3E-10 82.2 9.6 122 664-806 179-301 (338)
193 2hr2_A Hypothetical protein; a 98.1 5.4E-05 1.8E-09 65.1 12.6 97 666-762 13-130 (159)
194 3k9i_A BH0479 protein; putativ 98.1 7.3E-06 2.5E-10 68.2 7.2 86 677-763 3-90 (117)
195 3ro3_A PINS homolog, G-protein 98.1 2.1E-05 7.1E-10 69.8 10.7 132 631-762 11-157 (164)
196 1wao_1 Serine/threonine protei 98.0 2.2E-05 7.7E-10 83.6 11.7 118 603-723 15-134 (477)
197 2kat_A Uncharacterized protein 98.0 3.1E-05 1E-09 64.1 9.7 82 717-801 3-85 (115)
198 1klx_A Cysteine rich protein B 98.0 0.00023 7.7E-09 61.0 15.0 111 643-764 9-127 (138)
199 2l6j_A TPR repeat-containing p 97.9 1.1E-05 3.6E-10 66.4 6.1 94 699-795 4-104 (111)
200 3n71_A Histone lysine methyltr 97.9 0.00013 4.6E-09 76.9 15.1 127 674-800 319-466 (490)
201 3ma5_A Tetratricopeptide repea 97.9 3.3E-05 1.1E-09 61.9 7.3 68 733-802 6-74 (100)
202 2l6j_A TPR repeat-containing p 97.8 0.00014 4.6E-09 59.5 10.9 68 733-802 3-71 (111)
203 1zu2_A Mitochondrial import re 97.7 0.0001 3.6E-09 63.1 8.4 94 676-774 14-129 (158)
204 1na3_A Designed protein CTPR2; 97.7 0.00015 5.2E-09 56.6 8.9 68 735-804 10-78 (91)
205 3n71_A Histone lysine methyltr 97.7 0.00035 1.2E-08 73.8 14.1 125 638-762 318-463 (490)
206 1na3_A Designed protein CTPR2; 97.7 0.00033 1.1E-08 54.6 10.8 82 699-783 9-91 (91)
207 1pc2_A Mitochondria fission pr 97.7 0.00034 1.2E-08 59.2 10.7 89 715-805 14-107 (152)
208 2kc7_A BFR218_protein; tetratr 97.6 0.00042 1.4E-08 55.1 10.0 86 706-802 7-94 (99)
209 2kat_A Uncharacterized protein 97.6 0.00052 1.8E-08 56.5 10.6 79 682-762 3-81 (115)
210 2kc7_A BFR218_protein; tetratr 97.5 0.0002 7E-09 57.0 7.0 66 739-806 5-72 (99)
211 3bee_A Putative YFRE protein; 97.5 0.00063 2.2E-08 53.0 9.3 68 732-801 4-75 (93)
212 2v5f_A Prolyl 4-hydroxylase su 97.4 0.00089 3E-08 53.7 9.9 73 733-805 4-82 (104)
213 3ly7_A Transcriptional activat 97.3 0.0023 7.9E-08 63.3 13.3 71 731-803 274-344 (372)
214 3ma5_A Tetratricopeptide repea 97.3 0.00081 2.8E-08 53.6 8.4 64 698-762 6-69 (100)
215 3qww_A SET and MYND domain-con 97.2 0.0015 5.2E-08 67.7 10.9 94 712-805 311-423 (433)
216 1nzn_A CGI-135 protein, fissio 97.2 0.0026 8.9E-08 51.6 9.5 97 714-812 16-118 (126)
217 3ly7_A Transcriptional activat 97.1 0.0068 2.3E-07 60.0 13.7 142 626-773 191-347 (372)
218 3qwp_A SET and MYND domain-con 97.0 0.0052 1.8E-07 63.8 12.8 99 707-805 295-412 (429)
219 3qww_A SET and MYND domain-con 96.9 0.0053 1.8E-07 63.6 12.0 86 677-762 311-410 (433)
220 3o48_A Mitochondria fission 1 96.8 0.015 5.2E-07 47.2 11.3 84 729-812 35-122 (134)
221 3u64_A Protein TP_0956; tetrat 96.8 0.19 6.4E-06 47.6 20.4 82 716-801 180-272 (301)
222 1y8m_A FIS1; mitochondria, unk 96.7 0.04 1.4E-06 45.4 13.1 83 730-812 35-121 (144)
223 3qwp_A SET and MYND domain-con 96.7 0.014 4.9E-07 60.5 13.4 91 672-762 295-399 (429)
224 3mkq_A Coatomer beta'-subunit; 96.6 0.093 3.2E-06 60.4 21.1 121 325-478 610-731 (814)
225 1pc2_A Mitochondria fission pr 96.5 0.017 5.9E-07 48.8 10.0 84 680-767 14-102 (152)
226 2v5f_A Prolyl 4-hydroxylase su 96.3 0.036 1.2E-06 44.1 10.6 68 699-768 5-78 (104)
227 3u64_A Protein TP_0956; tetrat 96.2 0.029 1E-06 53.0 10.4 107 679-797 178-297 (301)
228 4h7y_A Dual specificity protei 96.2 0.062 2.1E-06 44.6 10.9 54 748-802 74-127 (161)
229 3mkq_A Coatomer beta'-subunit; 96.1 0.16 5.6E-06 58.3 19.2 129 283-444 633-761 (814)
230 3bee_A Putative YFRE protein; 96.1 0.035 1.2E-06 42.9 9.2 64 698-763 5-72 (93)
231 3mkq_B Coatomer subunit alpha; 96.0 0.44 1.5E-05 41.4 16.1 101 324-445 15-115 (177)
232 3mkq_B Coatomer subunit alpha; 95.6 0.71 2.4E-05 40.1 16.0 100 640-760 16-115 (177)
233 1nzn_A CGI-135 protein, fissio 95.5 0.058 2E-06 43.7 8.2 87 677-767 14-105 (126)
234 4h7y_A Dual specificity protei 95.4 0.2 7E-06 41.6 11.1 102 663-767 12-127 (161)
235 1wy6_A Hypothetical protein ST 94.8 1.4 4.7E-05 35.8 15.1 65 455-520 92-156 (172)
236 1wy6_A Hypothetical protein ST 94.5 1.6 5.4E-05 35.5 15.5 139 642-802 20-158 (172)
237 4ady_A RPN2, 26S proteasome re 94.3 9 0.00031 43.2 45.7 153 569-727 500-657 (963)
238 4b4t_P 26S proteasome regulato 94.2 4.4 0.00015 41.9 20.7 271 503-800 30-326 (445)
239 1qsa_A Protein (soluble lytic 94.1 7.7 0.00026 41.9 24.1 115 679-797 229-347 (618)
240 4gns_B Protein CSD3, chitin bi 93.7 0.66 2.3E-05 51.1 13.6 54 741-796 344-398 (754)
241 3o48_A Mitochondria fission 1 93.6 0.67 2.3E-05 37.7 9.9 70 696-767 37-109 (134)
242 1y8m_A FIS1; mitochondria, unk 93.5 1.7 5.7E-05 35.9 12.3 70 696-767 36-108 (144)
243 3lvg_A Clathrin heavy chain 1; 93.4 7.8E-05 2.7E-09 74.7 -15.9 195 172-397 82-276 (624)
244 4ady_A RPN2, 26S proteasome re 93.3 13 0.00046 41.8 49.9 266 496-772 381-664 (963)
245 3lvg_A Clathrin heavy chain 1; 93.1 0.00032 1.1E-08 70.4 -12.1 223 208-467 54-276 (624)
246 4gns_B Protein CSD3, chitin bi 92.2 0.57 1.9E-05 51.6 10.5 130 210-340 250-397 (754)
247 4b4t_P 26S proteasome regulato 90.6 13 0.00044 38.5 18.4 190 572-762 29-246 (445)
248 3ffl_A Anaphase-promoting comp 89.9 2.9 0.0001 35.6 10.2 35 768-802 121-155 (167)
249 3txn_A 26S proteasome regulato 89.9 18 0.0006 36.4 20.2 93 284-376 104-208 (394)
250 1v54_E Cytochrome C oxidase po 89.3 3.3 0.00011 31.6 8.9 64 750-814 26-89 (109)
251 3ffl_A Anaphase-promoting comp 88.8 2.2 7.5E-05 36.4 8.7 130 635-779 26-165 (167)
252 2ff4_A Probable regulatory pro 86.7 3.7 0.00013 41.6 10.9 71 700-771 172-247 (388)
253 4fhn_B Nucleoporin NUP120; pro 86.2 16 0.00055 43.2 17.5 87 419-507 899-989 (1139)
254 1v54_E Cytochrome C oxidase po 86.1 4.3 0.00015 31.0 7.8 59 717-776 28-86 (109)
255 1zbp_A Hypothetical protein VP 86.0 2.4 8.2E-05 39.5 8.0 53 709-762 7-59 (273)
256 1zbp_A Hypothetical protein VP 85.2 5.1 0.00017 37.4 9.7 52 675-727 8-59 (273)
257 2y69_E Cytochrome C oxidase su 84.5 7.2 0.00025 31.6 8.9 62 752-814 71-132 (152)
258 2ff4_A Probable regulatory pro 84.3 6.3 0.00022 39.9 11.3 71 667-738 174-249 (388)
259 4fhn_B Nucleoporin NUP120; pro 84.2 18 0.00061 42.9 16.6 164 494-679 817-986 (1139)
260 3lpz_A GET4 (YOR164C homolog); 84.1 32 0.0011 33.4 23.1 164 425-622 41-215 (336)
261 2p58_C Putative type III secre 83.2 8.6 0.0003 29.2 8.2 78 294-379 22-99 (116)
262 3lpz_A GET4 (YOR164C homolog); 82.4 38 0.0013 32.9 23.2 111 317-442 38-159 (336)
263 2uwj_G Type III export protein 81.3 8.4 0.00029 29.2 7.6 78 294-379 21-98 (115)
264 2wpv_A GET4, UPF0363 protein Y 81.0 41 0.0014 32.4 22.7 168 209-411 34-215 (312)
265 3esl_A Checkpoint serine/threo 80.4 19 0.00066 31.8 11.1 83 685-768 58-149 (202)
266 2wpv_A GET4, UPF0363 protein Y 80.4 43 0.0015 32.3 22.8 165 424-622 38-216 (312)
267 3esl_A Checkpoint serine/threo 80.1 11 0.00038 33.3 9.5 73 661-733 74-149 (202)
268 4b4t_R RPN7, 26S proteasome re 79.7 11 0.00038 38.8 11.2 61 667-727 134-196 (429)
269 2y69_E Cytochrome C oxidase su 78.8 22 0.00076 28.8 9.7 62 644-706 68-129 (152)
270 3txn_A 26S proteasome regulato 77.3 63 0.0022 32.4 23.6 28 490-517 20-47 (394)
271 4b4t_R RPN7, 26S proteasome re 74.8 13 0.00046 38.1 10.2 59 353-411 135-195 (429)
272 1qsa_A Protein (soluble lytic 73.4 1E+02 0.0036 33.1 34.5 204 572-795 227-439 (618)
273 4a1g_A Mitotic checkpoint seri 69.4 26 0.0009 29.4 8.7 52 716-767 82-134 (152)
274 2uwj_G Type III export protein 68.8 26 0.00088 26.6 7.3 49 709-763 49-97 (115)
275 2wvi_A Mitotic checkpoint seri 65.1 37 0.0013 28.9 8.9 54 716-769 77-131 (164)
276 4a1g_A Mitotic checkpoint seri 64.6 56 0.0019 27.4 9.7 50 683-732 84-134 (152)
277 2wvi_A Mitotic checkpoint seri 61.9 74 0.0025 27.1 10.2 55 751-805 77-132 (164)
278 3mv2_A Coatomer subunit alpha; 57.1 74 0.0025 30.6 10.2 24 739-762 212-235 (325)
279 2p58_C Putative type III secre 53.9 71 0.0024 24.4 8.9 77 679-763 22-98 (116)
280 4aez_C MAD3, mitotic spindle c 51.7 37 0.0013 30.6 6.9 52 716-767 131-183 (223)
281 3kae_A CDC27, possible protein 50.0 1.2E+02 0.0041 25.8 14.3 37 765-801 202-240 (242)
282 1wdy_A 2-5A-dependent ribonucl 45.2 44 0.0015 31.4 7.3 19 397-415 192-210 (285)
283 3eiq_C Programmed cell death p 44.9 1.2E+02 0.004 29.9 10.0 64 353-417 221-286 (358)
284 2d2s_A Exocyst complex compone 41.2 1.8E+02 0.006 26.6 10.0 27 384-410 91-117 (235)
285 2qx5_A Nucleoporin NIC96; mRNA 40.0 3.9E+02 0.013 28.9 20.2 42 319-361 157-198 (661)
286 4gq2_M Nucleoporin NUP120; bet 39.2 1.6E+02 0.0056 33.8 11.7 126 670-813 816-941 (950)
287 1wdy_A 2-5A-dependent ribonucl 39.1 73 0.0025 29.8 7.8 9 288-296 11-19 (285)
288 3eiq_C Programmed cell death p 38.7 2.9E+02 0.01 27.1 12.3 25 135-159 56-80 (358)
289 4aez_C MAD3, mitotic spindle c 38.0 1.5E+02 0.0051 26.7 8.6 55 750-804 130-185 (223)
290 2zu6_B Programmed cell death p 36.4 1.2E+02 0.0042 29.0 8.5 65 422-487 169-235 (307)
291 2zu6_B Programmed cell death p 34.7 1.3E+02 0.0046 28.8 8.5 65 667-732 169-235 (307)
292 3ltm_A Alpha-REP4; protein eng 34.6 2.4E+02 0.0081 24.8 17.5 92 662-762 93-184 (211)
293 2ijq_A Hypothetical protein; s 33.9 2.2E+02 0.0074 24.1 8.8 60 176-236 36-103 (161)
294 3mkr_B Coatomer subunit alpha; 33.6 1.1E+02 0.0037 29.4 7.4 18 675-692 113-130 (320)
295 3eu9_A Huntingtin-interacting 32.5 54 0.0018 29.7 5.4 15 321-335 46-60 (240)
296 3kae_A CDC27, possible protein 32.5 2.4E+02 0.0081 24.1 12.3 54 708-761 71-141 (242)
297 1k1a_A B-cell lymphoma 3-encod 32.3 1E+02 0.0035 27.9 7.4 14 325-338 87-100 (241)
298 2nsz_A Programmed cell death p 31.0 1.4E+02 0.0048 24.1 6.9 24 353-376 11-34 (129)
299 2d2s_A Exocyst complex compone 30.8 2.8E+02 0.0097 25.2 9.6 29 523-551 90-118 (235)
300 1k1a_A B-cell lymphoma 3-encod 30.7 79 0.0027 28.7 6.2 85 286-374 13-101 (241)
301 2qx5_A Nucleoporin NIC96; mRNA 30.4 5.5E+02 0.019 27.8 19.0 44 281-326 155-198 (661)
302 3eu9_A Huntingtin-interacting 29.8 45 0.0016 30.3 4.4 17 214-230 45-61 (240)
303 3pvs_A Replication-associated 26.0 5.4E+02 0.018 26.2 13.6 54 362-415 268-326 (447)
304 3kea_A K1L; tropism, ANK repea 25.7 1.2E+02 0.0041 28.6 6.7 227 264-514 13-243 (285)
305 2ijq_A Hypothetical protein; s 25.5 3.1E+02 0.01 23.2 8.7 52 641-692 44-103 (161)
306 4b4t_S RPN3, 26S proteasome re 25.3 1.6E+02 0.0055 30.6 7.5 64 699-762 231-298 (523)
307 3bqo_A Telomeric repeat-bindin 25.0 2.7E+02 0.0092 24.4 7.5 97 279-375 23-143 (211)
308 3ax2_A Mitochondrial import re 24.9 1.8E+02 0.006 20.7 5.4 24 739-762 22-45 (73)
309 4gq2_M Nucleoporin NUP120; bet 24.2 4.6E+02 0.016 30.0 12.1 49 420-468 898-950 (950)
310 2xig_A Ferric uptake regulatio 24.1 3E+02 0.01 22.8 7.9 58 199-257 18-75 (150)
311 3mv2_A Coatomer subunit alpha; 23.9 4.9E+02 0.017 25.0 12.1 25 704-728 212-236 (325)
312 4b4t_S RPN3, 26S proteasome re 23.3 4.4E+02 0.015 27.4 10.3 64 630-693 232-299 (523)
313 3pvs_A Replication-associated 23.3 6E+02 0.021 25.8 14.9 54 711-764 267-325 (447)
314 2ion_A PDCD4, programmed cell 23.2 1.4E+02 0.0046 25.1 5.5 84 352-436 12-97 (152)
315 2w2u_A Hypothetical P60 katani 22.9 83 0.0029 23.1 3.6 19 744-762 29-47 (83)
316 3hra_A Ankyrin repeat family p 22.0 1.2E+02 0.004 26.5 5.4 13 395-407 80-92 (201)
317 2xig_A Ferric uptake regulatio 22.0 3.1E+02 0.011 22.7 7.6 58 480-538 18-75 (150)
318 4b4t_O 26S proteasome regulato 21.9 5.2E+02 0.018 25.7 10.6 57 671-727 83-155 (393)
319 3jxi_A Vanilloid receptor-rela 21.7 45 0.0015 31.0 2.6 7 325-331 101-107 (260)
320 2r9g_A AAA ATPase, central reg 21.4 4.2E+02 0.014 23.3 9.6 92 320-412 17-116 (204)
321 2v6y_A AAA family ATPase, P60 21.3 93 0.0032 22.8 3.6 19 744-762 21-39 (83)
322 3t5v_B Nuclear mRNA export pro 21.3 2.2E+02 0.0074 29.2 7.6 62 701-762 178-248 (455)
323 1ya0_A SMG-7 transcript varian 21.0 5.1E+02 0.017 26.8 10.5 78 701-781 154-232 (497)
324 2nsz_A Programmed cell death p 20.7 3.3E+02 0.011 21.8 9.6 23 668-690 11-33 (129)
325 2fe3_A Peroxide operon regulat 20.3 2.8E+02 0.0096 22.8 7.0 58 480-538 13-70 (145)
326 2b7e_A PRE-mRNA processing pro 20.2 85 0.0029 21.2 2.8 29 331-359 3-31 (59)
327 3t8k_A Uncharacterized protein 20.1 3.7E+02 0.013 23.1 8.2 25 393-417 44-68 (186)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-39 Score=366.88 Aligned_cols=513 Identities=11% Similarity=-0.000 Sum_probs=303.6
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHH
Q 003449 183 LGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNK 262 (819)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~ 262 (819)
..+.|.+..+...+..+. .++...|+.++..|.+.|++++|..+|++|.+. .|+..++..++.+|.+.| ++++
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g-~~~~ 135 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTG-DYAR 135 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTT-CHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcC-cHHH
Confidence 445566666655555433 246778888888888888888888888888754 457778888888888888 7888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 003449 263 IMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKI 342 (819)
Q Consensus 263 a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 342 (819)
|..+|+++... .++..+++.++.+|.+.|++++|.++|+++.. +.. ....+.+.++ ..
T Consensus 136 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~~~~~~-----------~~ 193 (597)
T 2xpi_A 136 AKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNP-----FRK----DEKNANKLLM-----------QD 193 (597)
T ss_dssp HHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCT-----TC--------------C-----------CC
T ss_pred HHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCC-----ccc----cccccccccc-----------cc
Confidence 88888877532 45677777777777777777777777764211 110 0001111110 11
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH--HH-HHHHHHCCCCCCH
Q 003449 343 NGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAM--KV-FEEMRSAGCKPNI 419 (819)
Q Consensus 343 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~--~~-~~~~~~~~~~~~~ 419 (819)
.|...+..+|+.++.+|.+.|++++|+++|++|.+.+.. +...+..+...+...+..+.+. .+ +..+...+.....
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 234556778888888888888888888888888876422 4445555544433222222111 11 3333333333344
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003449 420 CTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAY 499 (819)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 499 (819)
.+|+.++..|.+.|++++|.++|+++.+. +++..+|+.++..|.+.|++++|.++|+++.+.+.. +..++..++.++
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 349 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASL 349 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHH
Confidence 55566666777777777777777776543 356666666666666666666666666666654422 445566666666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003449 500 SRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQML 579 (819)
Q Consensus 500 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 579 (819)
.+.|++++|.++++++.+... .+..+++.++..|.+.|++++|.++|+++.+.. +.
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~---------------------- 405 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQ---------------------- 405 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT----------------------
T ss_pred HHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CC----------------------
Confidence 666666666666666654322 245555555555555555555555555554321 11
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 003449 580 ALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSG 659 (819)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 659 (819)
+..+|+.++.+|.+.|++++|+++|+++.+.+
T Consensus 406 ------------------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 406 ------------------------------------------------FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp ------------------------------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred ------------------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33344444455555555555555555554432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--
Q 003449 660 FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS----GLVPD-- 733 (819)
Q Consensus 660 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-- 733 (819)
+.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+
T Consensus 438 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 438 -QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp -TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred -ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence 3355566666666666666666666666666542 225666666666677777777777777666654 44565
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCC
Q 003449 734 VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 734 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 803 (819)
..+|..++.+|.+.|++++|+++++++.+.+ ..+..+|..++.+|.+.|++++|.+.++++++.+|++.
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence 5577777777777777777777777777642 22667777777777777777777777777777777663
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-39 Score=366.96 Aligned_cols=474 Identities=11% Similarity=-0.042 Sum_probs=312.1
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 003449 277 PDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLI 356 (819)
Q Consensus 277 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 356 (819)
++...|+.++..|.+.|++++|..+|++|... .|+..++..++.+|.+.|++++|..+|+++.. ..++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHH
Confidence 45666777777777777777777777777643 45666666677777777777777777776643 245666667777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 003449 357 SAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFV 436 (819)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 436 (819)
.+|.+.|++++|+++|+++.. +.. ...++...++ ...+...+..+|+.++.+|.+.|+++
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNP-----FRK----DEKNANKLLM-----------QDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCT-----TC--------------C-----------CCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhHHHHHHHHhccCC-----ccc----cccccccccc-----------cccccchhHHHHHHHHHHHHHcCCHH
Confidence 777777777777766664211 110 0000100000 01223334555555666666666666
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHH
Q 003449 437 EMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSI-YKRM 515 (819)
Q Consensus 437 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~ 515 (819)
+|.++|+++.+.+ +.+...+..+...+...+..+.+.. ..+ +..+
T Consensus 218 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~---------------------------------~~l~~~~~ 263 (597)
T 2xpi_A 218 RAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLV---------------------------------LKLNYSTY 263 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHH---------------------------------HHSCTHHH
T ss_pred HHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHH---------------------------------HhcCCccc
Confidence 6666665555432 2233333333333322221111100 000 2222
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 003449 516 LEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAV 595 (819)
Q Consensus 516 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 595 (819)
...+......+|+.++..|.+.|++++|.++|+++.+. +++..++..++.+|.+.|++++|..+++++.+.+ +.+..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 340 (597)
T 2xpi_A 264 SKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLD 340 (597)
T ss_dssp HGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCT
T ss_pred ccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHH
Confidence 22222223333444444555555555555555555443 3455555555555555555555555555555433 23444
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 003449 596 LLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYS 675 (819)
Q Consensus 596 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 675 (819)
++..++.++.+.|++++|..+++++.+.. +.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 418 (597)
T 2xpi_A 341 VYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFA 418 (597)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 55556666666666666667776666543 3468888999999999999999999999998753 457889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003449 676 RSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALD 755 (819)
Q Consensus 676 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 755 (819)
+.|++++|+++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. ..+..+|..++.+|.+.|++++|++
T Consensus 419 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 419 IEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAIN 496 (597)
T ss_dssp HHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999999864 3478999999999999999999999999999853 3368899999999999999999999
Q ss_pred HHHHHHHc----CCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Q 003449 756 VVRYMIKQ----GCKPN--QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAK 816 (819)
Q Consensus 756 ~~~~~~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~~ 816 (819)
+++++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+|++ ...|..+...+.+
T Consensus 497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND-ANVHTAIALVYLH 562 (597)
T ss_dssp HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHH
Confidence 99999875 66786 7899999999999999999999999999999876 4556666665543
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.6e-26 Score=242.70 Aligned_cols=362 Identities=13% Similarity=0.066 Sum_probs=164.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003449 395 EKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVS 474 (819)
Q Consensus 395 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 474 (819)
.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|.
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 33444444444444433321 1122333333333444444444444444433321 223344444444444444444444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003449 475 GVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGR 554 (819)
Q Consensus 475 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 554 (819)
..|+++.+.. +.+..++..++..+...|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|+++.+..
T Consensus 88 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 165 (388)
T 1w3b_A 88 EHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4444444332 112334444455555555555555555554443221 23334444444455555555555555544431
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003449 555 CKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNA 634 (819)
Q Consensus 555 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 634 (819)
+.+..+|..+...+...|++++|...+++++... +. +...+..
T Consensus 166 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~-----------------------------------~~~~~~~ 208 (388)
T 1w3b_A 166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PN-----------------------------------FLDAYIN 208 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TT-----------------------------------CHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC-----------------------------------cHHHHHH
Confidence 2233444444444444444444444444444322 22 2334444
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003449 635 MISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR 714 (819)
Q Consensus 635 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 714 (819)
+...+...|++++|...+++..+.. +.+..++..++.+|...|++++|++.|+++++.+ +.+..+|..++.++.+.|+
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 286 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGS 286 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCC
Confidence 4444444455555555544444432 2234445555555555555555555555555432 1134455555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003449 715 MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVN 793 (819)
Q Consensus 715 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 793 (819)
+++|.+.++++.+.. ..+..++..++..+...|++++|+..++++++. .| +..++..++.+|.+.|++++|...++
T Consensus 287 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 287 VAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555555431 223445555555555555555555555555542 23 34455555555555555555555555
Q ss_pred HhhhcCCCC
Q 003449 794 NLSKLDPHV 802 (819)
Q Consensus 794 ~~~~~~p~~ 802 (819)
++.+..|+.
T Consensus 364 ~a~~~~p~~ 372 (388)
T 1w3b_A 364 EAIRISPTF 372 (388)
T ss_dssp HHHTTCTTC
T ss_pred HHHhhCCCC
Confidence 555555544
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.7e-29 Score=268.35 Aligned_cols=207 Identities=15% Similarity=0.164 Sum_probs=136.0
Q ss_pred HHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--------CH
Q 003449 190 SVAASLLHGLHKDGFDIDV-YAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGM--------PW 260 (819)
Q Consensus 190 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~--------~~ 260 (819)
..++.+...+.+.+....+ .+++.+|++|++.|++++|+.+|++|.+.|+.||..+||+||.+|++.+. ..
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3444555556555554433 45778888888888888888888888888888888888888888877651 14
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHH
Q 003449 261 NKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREM 340 (819)
Q Consensus 261 ~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 340 (819)
+.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 56666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003449 341 KINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEK 396 (819)
Q Consensus 341 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~ 396 (819)
.+.|+.||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666666666654
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.2e-26 Score=243.18 Aligned_cols=342 Identities=10% Similarity=0.056 Sum_probs=255.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003449 463 VFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQ 542 (819)
Q Consensus 463 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 542 (819)
.+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+... .+...|..+...+.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHH
Confidence 3444555555555555555442 12344455555556666666666666666555432 255666666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003449 543 SEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKK 622 (819)
Q Consensus 543 A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 622 (819)
|+..|+++.+.. +.+..+|..+..++...|++++|...++++++.. +.+...+..++..+...|++++|...|+++.+
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666665532 2334456666666666666666766666666543 33455566677777778888888888888777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003449 623 KGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISY 702 (819)
Q Consensus 623 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 702 (819)
.. +.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 53 3367889999999999999999999999999864 5567789999999999999999999999999863 2358899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003449 703 NTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCK 781 (819)
Q Consensus 703 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 781 (819)
..++.+|...|++++|.+.++++.+. .| +..+|..++.++...|++++|+..++++++.. ..+..++..++..+.+
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 99999999999999999999999985 34 46789999999999999999999999999852 3478999999999999
Q ss_pred cCcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 003449 782 LNQRYEAITFVNNLSKLDPHVTKELECKLSDRIA 815 (819)
Q Consensus 782 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~ 815 (819)
.|++++|...++++.+..|++.. .+..+...+.
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~ 350 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAA-AHSNLASVLQ 350 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHH-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHH
Confidence 99999999999999999998744 4555555543
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=5.1e-29 Score=266.23 Aligned_cols=205 Identities=18% Similarity=0.302 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC---------H
Q 003449 226 EAVMVFKKMEEEGCKPTL-ITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSL---------H 295 (819)
Q Consensus 226 ~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~---------~ 295 (819)
.+..+++++.+.+..... ..++.+|++|++.| ++++|.++|++|.+.|+.||..|||+||.+|++.+. +
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G-~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKG-DVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSC-CHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 445555666655554333 34666777777777 677777777777777777777777777777765543 5
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 003449 296 EEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQM 375 (819)
Q Consensus 296 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 375 (819)
++|.++|++|...|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 66677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003449 376 VEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGN 431 (819)
Q Consensus 376 ~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 431 (819)
.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..++.
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777777777776666654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.6e-24 Score=238.79 Aligned_cols=455 Identities=11% Similarity=0.046 Sum_probs=283.3
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003449 315 VTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGF 394 (819)
Q Consensus 315 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~ 394 (819)
..+..+...+.+.|++++|+..|+++.+.. |+..+|..++.+|.+.|++++|++.++++.+.+ +.+..++..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 445556666677777777777777776643 466667777777777777777777777776653 23455666666777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003449 395 EKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVS 474 (819)
Q Consensus 395 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 474 (819)
...|++++|...|+++.+.+. .+......++..+........+.+.+..+...+..++...+.......
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---------- 152 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK---------- 152 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------------
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH----------
Confidence 777777777777777666542 233333333433333333333333333222222112111111100000
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 003449 475 GVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR---GGMWEQSEKIFAEMK 551 (819)
Q Consensus 475 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~ 551 (819)
......|+.......+..+...... .......+...+......+.. .|++++|..+|+++.
T Consensus 153 ------~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 216 (514)
T 2gw1_A 153 ------DKQENLPSVTSMASFFGIFKPELTF----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA 216 (514)
T ss_dssp ----------CCCCHHHHHHHHTTSCCCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred ------hhccCCchhHHHHHHHhhcCHHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 0001111211111111000000000 000001123444444444443 677788877777776
Q ss_pred h-----CCC--------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003449 552 G-----GRC--------KPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFL 618 (819)
Q Consensus 552 ~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 618 (819)
+ ... +.+..++..+...+...|++++|...+++++..... ...+..++.++...|++++|...++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~ 294 (514)
T 2gw1_A 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFD 294 (514)
T ss_dssp HHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHH
T ss_pred HHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6 211 122345666777777888888888888887775433 7777778888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003449 619 ELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD 698 (819)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 698 (819)
++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..|...|++++|...++++.+.. +.+
T Consensus 295 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 371 (514)
T 2gw1_A 295 KALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEA 371 (514)
T ss_dssp HHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccC
Confidence 887654 2356678888888888888888888888888764 4456778888888888899999999998888753 235
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCC-CH
Q 003449 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV-PD----VITYNTFVASYAA---DSLFVEALDVVRYMIKQGCKP-NQ 769 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p-~~ 769 (819)
...+..++..|...|++++|...++++.+.... ++ ...+..++.++.. .|++++|+..++++++. .| +.
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~ 449 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSE 449 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccH
Confidence 677888888888899999999988888763211 11 3378888888888 89999999999988874 34 67
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHH
Q 003449 770 NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 770 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
.++..++..|.+.|++++|...++++.+.+|++....
T Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 486 (514)
T 2gw1_A 450 QAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL 486 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHH
Confidence 7888888889999999999999999999888875554
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1e-22 Score=224.17 Aligned_cols=460 Identities=10% Similarity=-0.032 Sum_probs=320.6
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 003449 278 DSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLIS 357 (819)
Q Consensus 278 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 357 (819)
....+......+.+.|++++|...|+++...+ |+..+|..+..+|.+.|++++|+..++++.+.+ +.+..+|..++.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 35567788889999999999999999999985 689999999999999999999999999998863 447789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 003449 358 AYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVE 437 (819)
Q Consensus 358 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 437 (819)
+|.+.|++++|...|+++.+.+. ++......++..+........+.+.+..+...+..++..........
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------- 151 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER--------- 151 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC-------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH---------
Confidence 99999999999999999998753 34444555555555544445555555444444333332221111100
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHH
Q 003449 438 MMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR---CGSFDQAMSIYKR 514 (819)
Q Consensus 438 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 514 (819)
... ....|+.......+..+....... ....+.+...+......+.. .|++++|..+|++
T Consensus 152 ----~~~---~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 214 (514)
T 2gw1_A 152 ----KDK---QENLPSVTSMASFFGIFKPELTFA----------NYDESNEADKELMNGLSNLYKRSPESYDKADESFTK 214 (514)
T ss_dssp ------------CCCCHHHHHHHHTTSCCCCCCS----------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHH
T ss_pred ----Hhh---ccCCchhHHHHHHHhhcCHHHHHH----------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Confidence 000 011233222221111111110000 00001123334444444443 6777888887777
Q ss_pred HHH-----CCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 003449 515 MLE-----AGV--------TPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLAL 581 (819)
Q Consensus 515 ~~~-----~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 581 (819)
+.+ ... ..+...+..+...+...|++++|...|+++.+.. |+...+..+...+...|++++|...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~ 292 (514)
T 2gw1_A 215 AARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNY 292 (514)
T ss_dssp HHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGH
T ss_pred HHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 776 311 1134566777778888888888888888887653 3367777788888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 003449 582 SEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFT 661 (819)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 661 (819)
+++++... +.+...+..++.++...|++++|...++++.+.... +...+..++..+...|++++|.+.++.+.+.. +
T Consensus 293 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 369 (514)
T 2gw1_A 293 FDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-P 369 (514)
T ss_dssp HHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-c
Confidence 88887764 445667788888888899999999999988876433 56788888889999999999999999988753 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCC
Q 003449 662 PSLTTYNTLMYMYSRSENFARAEDVLREILAKGIK-PD----IISYNTVIFAYCR---NGRMKEASRIFSEMRDSGLVPD 733 (819)
Q Consensus 662 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~ 733 (819)
.+...+..++..|...|++++|...++++.+.... ++ ...+..++.++.. .|++++|.+.++++.+.. ..+
T Consensus 370 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 448 (514)
T 2gw1_A 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRS 448 (514)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTC
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-ccc
Confidence 46678888999999999999999999998864211 11 3388889999999 999999999999998853 225
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 003449 734 VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSI 775 (819)
Q Consensus 734 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l 775 (819)
..++..++.++...|++++|...++++++. .|+ ...+..+
T Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~ 489 (514)
T 2gw1_A 449 EQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHHHHHH
Confidence 678889999999999999999999999984 564 3444333
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=3.1e-22 Score=221.73 Aligned_cols=442 Identities=13% Similarity=0.073 Sum_probs=257.3
Q ss_pred HHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003449 314 KVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSG 393 (819)
Q Consensus 314 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~ 393 (819)
...+..+...+.+.|++++|+..|+++.... +.+..+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3456666777777777777777777777652 3466777777777777777777777777777653 2355667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003449 394 FEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEV 473 (819)
Q Consensus 394 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 473 (819)
+...|++++|...|+.+ .. .|+ .....+..+...+...+|...++++.... |+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~-------------------- 155 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKD--EG-------------------- 155 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC--------------------------
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhC--cc--------------------
Confidence 77777777777777532 22 111 11222333444444556666666654321 00
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH--------HhcCCHHHHH
Q 003449 474 SGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLS-TYNAVLAAL--------ARGGMWEQSE 544 (819)
Q Consensus 474 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~--------~~~g~~~~A~ 544 (819)
......|+... +..+....+.+.+...+...... .+... ....+...+ ...|++++|.
T Consensus 156 -------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~ 222 (537)
T 3fp2_A 156 -------RGSQVLPSNTS----LASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKST 222 (537)
T ss_dssp ----------CCCCCHHH----HHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHH
T ss_pred -------ccccccchHhH----HHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 00011112111 11222223333332222211111 11111 111111111 1123566666
Q ss_pred HHHHHHHhCCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 003449 545 KIFAEMKGGRCKPNE-------LTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAF 617 (819)
Q Consensus 545 ~~~~~m~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 617 (819)
.+++++.+.. +.+. .++..+...+...|++++|...+++++... |+...+..++..+...|++++|...+
T Consensus 223 ~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 299 (537)
T 3fp2_A 223 DMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFF 299 (537)
T ss_dssp HHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred HHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666666542 1121 234444555666677777777777776643 33566666777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003449 618 LELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKP 697 (819)
Q Consensus 618 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 697 (819)
+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+..+|...|++++|..+++++.+.. +.
T Consensus 300 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~ 376 (537)
T 3fp2_A 300 QKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PT 376 (537)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 7776653 2356667777777777777777777777777653 3345667777777777788888888887777653 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHH
Q 003449 698 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSG-----LVPDVITYNTFVASYAAD----------SLFVEALDVVRYMIK 762 (819)
Q Consensus 698 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~ 762 (819)
+...+..++..|...|++++|.+.++++.+.. .......+...+.++... |++++|+..++++++
T Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 46677777777777888888888777776531 111122344555666666 778888888888777
Q ss_pred cCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 763 QGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 763 ~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
. .| +..++..++.+|.+.|++++|...++++.+..|.....
T Consensus 457 ~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 457 L--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred h--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 4 34 56777778888888888888888888888877776554
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.4e-21 Score=210.96 Aligned_cols=351 Identities=11% Similarity=0.091 Sum_probs=230.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003449 418 NICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLIS 497 (819)
Q Consensus 418 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 497 (819)
+...+..++..+.+.|++++|+.+|+++.... +.+...|..+..++...|++++|...|+++.+.+.. +...+..++.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 34455555555555555555555555554432 234455555555555555555555555555544321 3444445555
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 003449 498 AYSRCGSFDQAMSIYKRMLEAGVTPDL---STYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGRE 574 (819)
Q Consensus 498 ~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 574 (819)
.|...|++++|.+.|+++.+.... +. ..+..++..+.. ..+..+...+...|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 555555555555555555443211 12 233333222100 011122334666777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003449 575 IDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHF 654 (819)
Q Consensus 575 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 654 (819)
+++|+..++++++.. +.+...+..++.+|...|++++|...|+++.+.. +.+..++..++..|...|++++|.+.+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777777653 4566777777788888888888888888777653 33677788888888888888888888888
Q ss_pred HhhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHH
Q 003449 655 MNDSGFTPSLTTYNTL------------MYMYSRSENFARAEDVLREILAKGIKPD-----IISYNTVIFAYCRNGRMKE 717 (819)
Q Consensus 655 ~~~~~~~p~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~ 717 (819)
+.+.. +.+...+..+ +..|...|++++|..+|+++++. .|+ ...|..++.++.+.|++++
T Consensus 237 ~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 237 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 87653 3344444444 78889999999999999999875 344 4478888899999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH------------HHhcC-
Q 003449 718 ASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDG------------YCKLN- 783 (819)
Q Consensus 718 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~------------~~~~g- 783 (819)
|...++++.+.. ..+..+|..++.+|...|++++|+..++++++ +.| +..++..++.+ |...|
T Consensus 314 A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 314 AIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 999999998742 22577899999999999999999999999998 567 66777777733 44444
Q ss_pred ----cHHHHHHHHHH-hhhcCCCC
Q 003449 784 ----QRYEAITFVNN-LSKLDPHV 802 (819)
Q Consensus 784 ----~~~~A~~~~~~-~~~~~p~~ 802 (819)
+.+++.+.+++ +++..|+.
T Consensus 391 ~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp STTCCTTHHHHHHHHHHHHSCGGG
T ss_pred CccCCHHHHHHHHHHHHHHhCCCC
Confidence 66788888887 77777764
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=3.6e-21 Score=207.85 Aligned_cols=333 Identities=13% Similarity=0.089 Sum_probs=257.1
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 438 MMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLE 517 (819)
Q Consensus 438 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 517 (819)
+...+.++.... +.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..++.++...|++++|...|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 334444444332 4456777778888888888888888888877653 23667777788888888888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 003449 518 AGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNE----LTYSSLLHAYANGREIDQMLALSEEIYSGIIEPH 593 (819)
Q Consensus 518 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 593 (819)
.+.. +...+..+...+.+.|++++|.+.|+++.+. .|+. ..+..+...+..
T Consensus 89 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~---------------------- 143 (450)
T 2y4t_A 89 LKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM---------------------- 143 (450)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH----------------------
T ss_pred cCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH----------------------
Confidence 6543 5677777888888888888888888888765 3333 344444443211
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 003449 594 AVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYM 673 (819)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 673 (819)
..+..++..+...|++++|...|+++.+.. +.+...+..++..|.+.|++++|.+.++++.+.. +.+..++..++.+
T Consensus 144 -~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 220 (450)
T 2y4t_A 144 -QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTL 220 (450)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 112334556788999999999999999864 3478889999999999999999999999998764 5678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHH
Q 003449 674 YSRSENFARAEDVLREILAKGIKPDIISYNTV------------IFAYCRNGRMKEASRIFSEMRDSGLVPD-----VIT 736 (819)
Q Consensus 674 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~ 736 (819)
|...|++++|+..|+++.+.. +.+...+..+ +..|.+.|++++|.+.|+++.+. .|+ ...
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~ 297 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRS 297 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHH
Confidence 999999999999999999753 2245555554 88999999999999999999984 454 347
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 737 YNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 737 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
+..++.++.+.|++++|+..++++++. .| +..+|..++.+|...|++++|...++++++.+|++...
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 365 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHH
Confidence 888999999999999999999999984 45 78999999999999999999999999999999998554
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=5.1e-21 Score=211.92 Aligned_cols=439 Identities=9% Similarity=-0.010 Sum_probs=303.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 003449 278 DSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLIS 357 (819)
Q Consensus 278 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 357 (819)
....+..+...+.+.|++++|...|+++.... +.+..++..+..+|.+.|++++|++.++++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 35678888899999999999999999999874 4578899999999999999999999999998863 447889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHc
Q 003449 358 AYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAG------CKPNICTFNALIKMHGN 431 (819)
Q Consensus 358 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~ 431 (819)
.+...|++++|++.|+ .... .|+.. ...+..+...+....|...++++.... ..|+ ...+..+..
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS----NTSLASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCC----HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH-HHhc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccch----HhHHHHHHH
Confidence 9999999999999996 3332 23322 223445556667788999999886541 1223 233344455
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003449 432 RGNFVEMMKVFDEINKCNCKPDIV-TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMS 510 (819)
Q Consensus 432 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 510 (819)
..+.+.+...+...... .+... ....+...+...+ .......|++++|..
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~---------------------------~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATD---------------------------EGYLVANDLLTKSTD 223 (537)
T ss_dssp TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSH---------------------------HHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhh---------------------------hhhHHHHHHHHHHHH
Confidence 55665555444332221 11111 1122222211110 001111245566666
Q ss_pred HHHHHHHCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003449 511 IYKRMLEAGVTPD-------LSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSE 583 (819)
Q Consensus 511 ~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 583 (819)
+++.+.+.... + ..++..+...+...|++++|...|+++.+. .|+...+..+...+...|++++|+..++
T Consensus 224 ~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 224 MYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 66666554322 2 223455556667777777777777777764 3456677777777777788888888887
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC
Q 003449 584 EIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS 663 (819)
Q Consensus 584 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 663 (819)
+++... +.+...+..++.++...|++++|...++++.+... .+...+..+...+...|++++|.+.++++.+.. +.+
T Consensus 301 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~ 377 (537)
T 3fp2_A 301 KAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTL 377 (537)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 777654 44566777788888888888888888888877542 256778888888899999999999999888764 456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHC
Q 003449 664 LTTYNTLMYMYSRSENFARAEDVLREILAKGI-----KPDIISYNTVIFAYCRN----------GRMKEASRIFSEMRDS 728 (819)
Q Consensus 664 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~ 728 (819)
...+..+..++...|++++|...|+++++... ......+..+...+... |++++|...++++.+.
T Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 67888889999999999999999998875321 11123345556777777 9999999999999885
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003449 729 GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 729 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
. ..+...+..++.+|...|++++|+..++++++.
T Consensus 458 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 458 D-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3 225678889999999999999999999999984
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=2.5e-16 Score=177.34 Aligned_cols=570 Identities=11% Similarity=0.146 Sum_probs=297.3
Q ss_pred cccHHHHHHhhcCCCChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 003449 133 GADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYT 212 (819)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 212 (819)
+.++..+++++...|.+.+|+++++.+.-. +..+.-.....+.++..-.+. +.....++.+..... ...
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~---~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~ 1053 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAP 1053 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcC---CCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHH
Confidence 344555666666666666666666665421 111112333344444444444 334444444433211 123
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 003449 213 SLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRG 292 (819)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~ 292 (819)
.+...+...|.+++|..+|++.. -.....+.++. ..+ ++++|.++.++.. +..+|..+..++...
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~-nldrAiE~Aervn------~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIG-NLDRAYEFAERCN------EPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHh-hHHHHHHHHHhcC------CHHHHHHHHHHHHhC
Confidence 35556666666777777666642 12222233322 334 5666666666441 355666666667777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 003449 293 SLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELK 372 (819)
Q Consensus 293 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 372 (819)
|++++|.+.|.+. .|...|..++..+.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+.
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 7777776666442 355566666666677777777777766655542 22222234666666666666433221
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC
Q 003449 373 TQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKP 452 (819)
Q Consensus 373 ~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 452 (819)
+ .++...|..+...|...|++++|..+|..+ ..|..++..|++.|++++|.+.+++. .
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 1 234445555666666667777777766663 35666666677777777777666664 2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003449 453 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLA 532 (819)
Q Consensus 453 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 532 (819)
+..+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++...... .-....|+-+..
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELai 1322 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 1322 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHH
Confidence 456666666666666666666554432 22345555566666667777777777766655443 223344444444
Q ss_pred HHHhc--CCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----------CCCCCCHH
Q 003449 533 ALARG--GMWEQSEKIFAEMKGGR----CKPNELTYSSLLHAYANGREIDQMLALSEEIYS-----------GIIEPHAV 595 (819)
Q Consensus 533 ~~~~~--g~~~~A~~~~~~m~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~ 595 (819)
.+++. ++..++.++|..-.... .--+...|..+.-.|.+.++++.|....-+-.. .....+..
T Consensus 1323 LyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~e 1402 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVE 1402 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHH
Confidence 44442 34444444444332210 001344566666666666666666532211100 00123344
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 003449 596 LLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYS 675 (819)
Q Consensus 596 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 675 (819)
++...+..|.. ....+..-+.......+. +...+..+.+.+++.-+...++..... -+..+=.++...|.
T Consensus 1403 lyykai~Fyl~--~~P~~lndLl~~l~~rlD-----~~R~V~l~~~~~~l~lik~yl~~vq~~---n~~~Vneal~el~i 1472 (1630)
T 1xi4_A 1403 LYYRAIQFYLE--FKPLLLNDLLMVLSPRLD-----HTRAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFI 1472 (1630)
T ss_pred HHHHHHHHHHh--hChHHHHHHHHHhhhcCC-----hHHHHHHHHHcCChHHhHHHHHHHHHh---cchhhhHHHHHHhc
Confidence 44444444441 112222222222211111 122233334444444444444444322 12222233444444
Q ss_pred hcCCHHHHHH------------HHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003449 676 RSENFARAED------------VLREILAKGIKPDIISYNTVI-FAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVA 742 (819)
Q Consensus 676 ~~g~~~~A~~------------~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 742 (819)
..++++.-.+ +-+++.+. +..-+..++ ..|.++|+|+.|.+++++.. .|.-.+.
T Consensus 1473 eeed~~~Lr~si~~~~nfd~~~La~~lekh----eLl~frrIAa~ly~~n~~~~~ai~l~k~d~---------l~~dAm~ 1539 (1630)
T 1xi4_A 1473 TEEDYQALRTSIDAYDNFDNISLAQRLEKH----ELIEFRRIAAYLFKGNNRWKQSVELCKKDS---------LYKDAMQ 1539 (1630)
T ss_pred CccchHHHHHHHhhccCcCHHHHHHHhhhh----hHHHHHHHHHHHHHhcCcHHHHHHHHHhcc---------CHHHHHH
Confidence 4444432211 11111111 222233333 44556689999999887632 3455677
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHH
Q 003449 743 SYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAIT 790 (819)
Q Consensus 743 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 790 (819)
...++|+.+.+.+++.-..+. -+...|...+..|+..-+.+-+.+
T Consensus 1540 ~a~~S~d~e~~e~ll~~F~~~---~~~E~f~a~Ly~cy~l~~pd~vle 1584 (1630)
T 1xi4_A 1540 YASESKDTELAEELLQWFLQE---EKRECFGACLFTCYDLLRPDVVLE 1584 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHHhc---CChhHHHHHHHHHhccCCchHHHH
Confidence 788999999999999888874 356677777777777777776665
No 14
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=1.1e-17 Score=181.74 Aligned_cols=377 Identities=13% Similarity=0.057 Sum_probs=232.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cC
Q 003449 397 AGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGN----RGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQ----NG 468 (819)
Q Consensus 397 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 468 (819)
.+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.+ +...+..|...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 344444444444444332 23333444444443 444444444444444322 33334444444444 44
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCH
Q 003449 469 MDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR----CGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR----GGMW 540 (819)
Q Consensus 469 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 540 (819)
++++|...|++..+.| +...+..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .++.
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence 4555555555544443 33444445555544 455666666666655542 45555555555555 5666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----CCCHHH
Q 003449 541 EQSEKIFAEMKGGRCKPNELTYSSLLHAYAN----GREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSK----SDLLMD 612 (819)
Q Consensus 541 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 612 (819)
++|.+.|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +......+...|.. .++.++
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 66666666665543 44455555555554 566666666666666543 33445555555555 677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 003449 613 TERAFLELKKKGFSPDIPTLNAMISIYGRR-----QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE---NFARAE 684 (819)
Q Consensus 613 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~ 684 (819)
|...|++..+.| +...+..+...|... +++++|.+.+++..+.| +...+..+...|...| ++++|+
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 777777777653 556677777777766 78889998888888764 4566777777777755 788899
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHH
Q 003449 685 DVLREILAKGIKPDIISYNTVIFAYCR----NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEALDV 756 (819)
Q Consensus 685 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~ 756 (819)
++|++..+.+ +...+..+...|.. .+++++|.++|++..+.| +...+..++..|.. .+++++|..+
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999988864 67788888888888 789999999999988865 56788888888887 7899999999
Q ss_pred HHHHHHcCCC-C-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 757 VRYMIKQGCK-P-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 757 ~~~~~~~g~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
++++.+.|.. | +......++..+.. +.++|.+..++..+..|+....
T Consensus 426 ~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~~~~~ 474 (490)
T 2xm6_A 426 FDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAPEAWA 474 (490)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999886533 2 44555555554433 4455665666666555544333
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=5e-19 Score=184.51 Aligned_cols=320 Identities=12% Similarity=0.080 Sum_probs=245.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003449 453 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLA 532 (819)
Q Consensus 453 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 532 (819)
++..+..+...+...|++++|...|+++.+... .+..++..+...+...|++++|...++++.+.... +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 355677777888888888888888888877643 25677777888888888888888888887775433 5677777778
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCC
Q 003449 533 ALARGGMWEQSEKIFAEMKGGRCKP----NELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSD 608 (819)
Q Consensus 533 ~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 608 (819)
.+...|++++|...|+++.+. .| +...+..+...+. ......++..+...|
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 888888888888888887765 34 2222222221110 011233466778889
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003449 609 LLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLR 688 (819)
Q Consensus 609 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 688 (819)
++++|...++++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..++..+...|++++|...++
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999888764 3467888888999999999999999999998864 5677888899999999999999999999
Q ss_pred HHHHCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHH
Q 003449 689 EILAKGIKPDIISYN------------TVIFAYCRNGRMKEASRIFSEMRDSGLVPDV----ITYNTFVASYAADSLFVE 752 (819)
Q Consensus 689 ~~~~~~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~ 752 (819)
++.+.. +.+...+. .++..+.+.|++++|.+.++++.+.... +. ..+..++.++...|++++
T Consensus 213 ~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 213 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHH
Confidence 998753 22333333 2367789999999999999999985322 22 235568889999999999
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 753 ALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 753 A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
|+..++++++. .| +..++..++..|...|++++|...++++.+.+|++...
T Consensus 291 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 342 (359)
T 3ieg_A 291 AIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342 (359)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHH
Confidence 99999999985 45 78899999999999999999999999999999988654
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=5.2e-16 Score=174.80 Aligned_cols=547 Identities=11% Similarity=0.102 Sum_probs=270.1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003449 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDG--FDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVI 249 (819)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 249 (819)
++.-....++.|...|.+.+|.++++.+.-.+ +.-+....+.|+.+..+. +..+...+..+.... + ..-+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHH
Confidence 33444555566666666666666666555321 112334555555555554 334444444443311 1 2224
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCC
Q 003449 250 LNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRR 329 (819)
Q Consensus 250 l~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 329 (819)
...+...| .+++|..+|++.. -.....+.++. ..|++++|.++.++. -+..+|..+..++.+.|+
T Consensus 1056 A~Iai~lg-lyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1056 ANIAISNE-LFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHhCC-CHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 44455555 5666666666542 11111222221 445566666655533 134555566666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003449 330 PKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEE 409 (819)
Q Consensus 330 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~ 409 (819)
+++|.+.|.+. .+...|..++..+.+.|++++|.+.+...++.. ++....+.++.+|++.+++++.....
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 66666666443 245555556666666666666666666555432 22222233555566666555322221
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 003449 410 MRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPER 489 (819)
Q Consensus 410 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 489 (819)
. .++...+..+...|...|++++|..+|..+ ..|..+...|++.|++++|.+.+++. -+.
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~ 1250 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NST 1250 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCH
Confidence 1 223444445566666666666666666553 25566666666666666666666554 144
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003449 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAY 569 (819)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 569 (819)
.+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|+.+...|
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLy 1324 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 1324 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHH
Confidence 55665666666666666665544432 1245555566666666666666666665555432 22233444444444
Q ss_pred Hc--cCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHhcCCCHHHHHHHHHH-------------HHHCCCCCCHH
Q 003449 570 AN--GREIDQMLALSEEIYSGI----IEPHAVLLKTLILVYSKSDLLMDTERAFLE-------------LKKKGFSPDIP 630 (819)
Q Consensus 570 ~~--~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------------~~~~~~~~~~~ 630 (819)
++ -++..+++++|..-.... .-.+...|..++..|.+.|+++.|....-+ .+.. ..+..
T Consensus 1325 aKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~e 1402 (1630)
T 1xi4_A 1325 SKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVE 1402 (1630)
T ss_pred HhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHH
Confidence 43 333444444444332210 002344555666666666666665522111 1111 22444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003449 631 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC 710 (819)
Q Consensus 631 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 710 (819)
.|...+..|... ..+++.-+.......+. +...+..+.+.|++.-+..+++.+...+ +...-..+...|.
T Consensus 1403 lyykai~Fyl~~--~P~~lndLl~~l~~rlD-----~~R~V~l~~~~~~l~lik~yl~~vq~~n---~~~Vneal~el~i 1472 (1630)
T 1xi4_A 1403 LYYRAIQFYLEF--KPLLLNDLLMVLSPRLD-----HTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFI 1472 (1630)
T ss_pred HHHHHHHHHHhh--ChHHHHHHHHHhhhcCC-----hHHHHHHHHHcCChHHhHHHHHHHHHhc---chhhhHHHHHHhc
Confidence 555555554422 12222222222211111 1233444555566666666665555322 3334444555555
Q ss_pred hcCCHHHHHHHHHHHHH-------CCC-CCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003449 711 RNGRMKEASRIFSEMRD-------SGL-VPDVITYNTFVASYA-ADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCK 781 (819)
Q Consensus 711 ~~g~~~~A~~~~~~~~~-------~g~-~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 781 (819)
...+++.-++..+.... ..+ +.+..-+..++..+. +.|+|..|.+++++.. .|.-.+.+..+
T Consensus 1473 eeed~~~Lr~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~---------l~~dAm~~a~~ 1543 (1630)
T 1xi4_A 1473 TEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDS---------LYKDAMQYASE 1543 (1630)
T ss_pred CccchHHHHHHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhcc---------CHHHHHHHHHH
Confidence 55554322222111110 000 112223344554444 4599999998887753 24456667778
Q ss_pred cCcHHHHHHHHHHhhhc
Q 003449 782 LNQRYEAITFVNNLSKL 798 (819)
Q Consensus 782 ~g~~~~A~~~~~~~~~~ 798 (819)
.|+.+.+.+++.-..+.
T Consensus 1544 S~d~e~~e~ll~~F~~~ 1560 (1630)
T 1xi4_A 1544 SKDTELAEELLQWFLQE 1560 (1630)
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 88888887777776666
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=2.8e-17 Score=178.63 Aligned_cols=366 Identities=13% Similarity=0.042 Sum_probs=314.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 003449 403 AMKVFEEMRSAGCKPNICTFNALIKMHGN----RGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQ----NGMDSEVS 474 (819)
Q Consensus 403 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~ 474 (819)
+...++...+.| +...+..+...|.. .+++++|...|++..+.+ +...+..|...|.. .++.++|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 345555555554 67777888888887 899999999999998864 67888889999988 99999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 003449 475 GVFKEMKRAGFIPERDTFNTLISAYSR----CGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR----GGMWEQSEKI 546 (819)
Q Consensus 475 ~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 546 (819)
+.|++..+.| +...+..|...|.. .+++++|.++|++..+.+ +...+..+...|.. .+++++|++.
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999998875 66778888888888 889999999999999875 67788888888887 7899999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----CCCHHHHHHHHH
Q 003449 547 FAEMKGGRCKPNELTYSSLLHAYAN----GREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSK----SDLLMDTERAFL 618 (819)
Q Consensus 547 ~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 618 (819)
|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +......+...|.. .+++++|...|+
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998864 67888888888887 899999999999998864 56677788888876 899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHH
Q 003449 619 ELKKKGFSPDIPTLNAMISIYGR----RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRS-----ENFARAEDVLRE 689 (819)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~ 689 (819)
+..+.+ +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|... +++++|...|++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 998864 66778888888877 899999999999998865 566777888888887 899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHH
Q 003449 690 ILAKGIKPDIISYNTVIFAYCRNG---RMKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEALDVVRYMIK 762 (819)
Q Consensus 690 ~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 762 (819)
..+.+ +...+..+...|...| ++++|.++|++..+.| +...+..++..|.. .+++++|+.+++++.+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 99875 5677888888888766 7999999999999864 67889999999998 8999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHhhhcCCC
Q 003449 763 QGCKPNQNTYNSIVDGYCK----LNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 763 ~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~ 801 (819)
.| ++..+..++..|.. .++.++|..+++++.+.+|+
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 65 67889999999998 89999999999999999965
No 18
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=4e-18 Score=177.65 Aligned_cols=333 Identities=11% Similarity=0.063 Sum_probs=236.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003449 418 NICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLIS 497 (819)
Q Consensus 418 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 497 (819)
+...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 45678888999999999999999999998764 45688999999999999999999999999998743 36788999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 003449 498 AYSRCGSFDQAMSIYKRMLEAGVT--PDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREI 575 (819)
Q Consensus 498 ~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 575 (819)
.+...|++++|.+.|+.+.+.... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 999999999999999999986430 13333433321100 01122233444555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003449 576 DQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFM 655 (819)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 655 (819)
++|+..++++.... +.+...+..++.++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555432 3344555555556666666666666666655543 234556666666666666666666666666
Q ss_pred hhCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 003449 656 NDSGFTPSLTTYN------------TLMYMYSRSENFARAEDVLREILAKGIKPDI----ISYNTVIFAYCRNGRMKEAS 719 (819)
Q Consensus 656 ~~~~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~ 719 (819)
.+.. +.+...+. .++..+.+.|++++|...++++.+.... +. ..+..+..++...|++++|.
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 6542 22333222 3366788999999999999999875322 33 33556788999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc
Q 003449 720 RIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKL 782 (819)
Q Consensus 720 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~ 782 (819)
+.++++.+.. ..+..++..++.++...|++++|...++++++ +.| +..++..+..++...
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHH
Confidence 9999999852 22677899999999999999999999999998 467 566777776665443
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=3.6e-18 Score=175.72 Aligned_cols=271 Identities=13% Similarity=0.015 Sum_probs=152.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 003449 527 YNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSK 606 (819)
Q Consensus 527 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 606 (819)
+..++..+...|++++|.++|+++.+.. +.+...+..++.++...|++++|...++++++.. +.+...+..++..+..
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM 102 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 3333444444444444444444444321 1222233333444444444444444444444432 2233444445555555
Q ss_pred CC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003449 607 SD-LLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAED 685 (819)
Q Consensus 607 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 685 (819)
.| ++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+
T Consensus 103 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAER 180 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHH
Confidence 55 5555555555555432 2234556666666666666666666666666543 2334455556666666777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003449 686 VLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG--------LVPDVITYNTFVASYAADSLFVEALDVV 757 (819)
Q Consensus 686 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 757 (819)
.++++.+.. +.+...+..++..+...|++++|...++++.+.. ...+..++..++.++...|++++|+..+
T Consensus 181 ~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (330)
T 3hym_B 181 FFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259 (330)
T ss_dssp HHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777666542 2245666666667777777777777776666521 0222356666777777777777777777
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCH
Q 003449 758 RYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 758 ~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
+++++. .| +..++..++.+|.+.|++++|.+.++++.+.+|++..
T Consensus 260 ~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 305 (330)
T 3hym_B 260 RQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305 (330)
T ss_dssp HHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH
T ss_pred HHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchH
Confidence 777663 33 5566667777777777777777777777777766543
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=2.9e-16 Score=172.51 Aligned_cols=433 Identities=9% Similarity=0.041 Sum_probs=290.7
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003449 337 LREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCK 416 (819)
Q Consensus 337 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 416 (819)
|++.++. .+-+...|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|++++|..+|++++...
T Consensus 2 le~al~~-~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEE-NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHH-CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhh-CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 3444443 2347778888887 47788888888888888875 34466678888888888888888888888888763
Q ss_pred CCHHHHHHHHHHH-HccCCHHHHHH----HHHHHhhC-CCC-CCHHHHHHHHHHHHh---------cCChHHHHHHHHHH
Q 003449 417 PNICTFNALIKMH-GNRGNFVEMMK----VFDEINKC-NCK-PDIVTWNTLLAVFGQ---------NGMDSEVSGVFKEM 480 (819)
Q Consensus 417 ~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~~-~~~-~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m 480 (819)
|+...|..++... ...|+.++|.+ +|+..... |.. .+...|..++..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5666676666433 34566655554 66655432 333 345667766665544 56677777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------HhCC
Q 003449 481 KRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEM------KGGR 554 (819)
Q Consensus 481 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m------~~~~ 554 (819)
.+.........|..........|. .+...++. .+.++++.|..++.++ .+..
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 662111001222221111100110 00011110 1234456666666552 2221
Q ss_pred ---CCCC--------HHHHHHHHHHHHcc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-------CC
Q 003449 555 ---CKPN--------ELTYSSLLHAYANG----REI----DQMLALSEEIYSGIIEPHAVLLKTLILVYSK-------SD 608 (819)
Q Consensus 555 ---~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~ 608 (819)
++|+ ...|...+...... ++. +.+..+|++++... +.+..++..++..+.. .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhcc
Confidence 2333 23444444322221 222 46778888888753 5667888888887775 78
Q ss_pred CHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-H-HHHHHHHHHHHhcCC
Q 003449 609 LLM-------DTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS-L-TTYNTLMYMYSRSEN 679 (819)
Q Consensus 609 ~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~g~ 679 (819)
+++ +|..+|++..+.-.+.+...+..++..+.+.|++++|.++|+++.+. .|+ . ..|..++..+.+.|+
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcC
Confidence 877 89999999986323446888999999999999999999999999985 454 3 578889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003449 680 FARAEDVLREILAKGIKPDIISYNTVIFA-YCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVR 758 (819)
Q Consensus 680 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 758 (819)
+++|.++|++.++.. +.+...|...+.. +...|+.++|.++|++.++.. .-+...|..++..+.+.|+.++|..+++
T Consensus 372 ~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 372 IKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 999999999999752 2233333333322 346899999999999998852 2256788999999999999999999999
Q ss_pred HHHHcC-CCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC
Q 003449 759 YMIKQG-CKP--NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 759 ~~~~~g-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
++++.+ ..| ...+|...+......|+.+.+..+.+++.+..|+
T Consensus 450 ~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 450 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 999853 223 2458888888888999999999999999999884
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=8.5e-18 Score=172.89 Aligned_cols=292 Identities=8% Similarity=-0.058 Sum_probs=221.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003449 487 PERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLL 566 (819)
Q Consensus 487 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 566 (819)
.+...+..++..+...|++++|.++|+++.+.... +...+..++..+...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 34455666667777777777777777777665432 44455556666677777777777777776642 33456667777
Q ss_pred HHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003449 567 HAYANGR-EIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMV 645 (819)
Q Consensus 567 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 645 (819)
..+...| ++++|...+++++... +.+...+..++.++...|++++|...++++.+.... +...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 7777777 7777777777777654 444566777778888888888888888888775422 456677788889999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHH
Q 003449 646 AKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKG--------IKPDIISYNTVIFAYCRNGRMKE 717 (819)
Q Consensus 646 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~ 717 (819)
++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+.. ......++..++.+|...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999998864 5577888999999999999999999999988631 12346788899999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH-HhcCcHH
Q 003449 718 ASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGY-CKLNQRY 786 (819)
Q Consensus 718 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~-~~~g~~~ 786 (819)
|.+.++++.+... .+...+..++.++...|++++|...++++++ +.| +...+..++.++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999988532 2567889999999999999999999999988 456 778888898888 4666643
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=9.4e-16 Score=168.43 Aligned_cols=218 Identities=11% Similarity=0.009 Sum_probs=155.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHhcC
Q 003449 542 QSEKIFAEMKGGRCKPNELTYSSLLHAYAN-------GREID-------QMLALSEEIYSGIIEPHAVLLKTLILVYSKS 607 (819)
Q Consensus 542 ~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 607 (819)
.+..+|++.... .+.+...|..++..+.. .|+++ +|..++++.++...+.+..++..++..+.+.
T Consensus 256 ~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 556666666654 23455666666666554 56665 7777777777633355677777777788888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHH
Q 003449 608 DLLMDTERAFLELKKKGFSPDI-PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYM-YSRSENFARAED 685 (819)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~ 685 (819)
|++++|..+|+++++.... +. ..|..++..+.+.|++++|.++|++..+.. +.+...|...+.. +...|+.++|..
T Consensus 335 g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHH
Confidence 8888888888888775321 32 477888888888888999999999888753 2233333333322 346889999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 686 VLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL-VPD--VITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 686 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+|++.++.. +.+...|..++..+.+.|+.++|..+|++.+..+. .|+ ...|..++......|+.+.+..+.+++.+
T Consensus 413 ~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 413 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999888753 23578888888888899999999999999988532 232 34677777777888999999999999887
Q ss_pred c
Q 003449 763 Q 763 (819)
Q Consensus 763 ~ 763 (819)
.
T Consensus 492 ~ 492 (530)
T 2ooe_A 492 A 492 (530)
T ss_dssp H
T ss_pred H
Confidence 3
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=6.7e-18 Score=176.68 Aligned_cols=262 Identities=9% Similarity=0.004 Sum_probs=177.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 003449 527 YNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSK 606 (819)
Q Consensus 527 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 606 (819)
+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|+..++++++.. +.+...+..++.++..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444332 2233344444444444444444444444444432 2234444444444444
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHH----------------HHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--CHHHHH
Q 003449 607 SDLLMDTERAFLELKKKGFSPDIPT----------------LNAMISIYGRRQMVAKTNEILHFMNDSGFTP--SLTTYN 668 (819)
Q Consensus 607 ~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~ 668 (819)
.|++++|...++++.+.... +... +..+...+ ..|++++|.+.++++.+.. +. +..++.
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~ 221 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLD-PTSIDPDVQC 221 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHS-TTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC-cCcccHHHHH
Confidence 55555555555444443211 1111 11233333 8899999999999998764 22 578899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003449 669 TLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADS 748 (819)
Q Consensus 669 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 748 (819)
.++.+|...|++++|+..++++++.. +.+...|..++..|...|++++|...++++.+.. ..+..++..++.+|...|
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCC
Confidence 99999999999999999999999863 3358899999999999999999999999998853 235678999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCC-C-----------HHHHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 003449 749 LFVEALDVVRYMIKQGCKP-N-----------QNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 749 ~~~~A~~~~~~~~~~g~~p-~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
++++|+..++++++. .| + ..+|..++.+|...|++++|..++++.++
T Consensus 300 ~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 300 AHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 999999999999874 33 2 68899999999999999999999886654
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=2.6e-16 Score=170.77 Aligned_cols=389 Identities=10% Similarity=0.008 Sum_probs=226.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC-----C
Q 003449 383 DVFTYTTLLSGFEKAGKDESAMKVFEEMRSA-----G---CKPNICTFNALIKMHGNRGNFVEMMKVFDEINKC-----N 449 (819)
Q Consensus 383 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~ 449 (819)
....|+.+...+...|+.++|++.|++..+. + ......+|+.+...|...|++++|...++++.+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3457888888888889999998888876542 1 1223567788888888888888888888776532 0
Q ss_pred --CCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHHCCCCC
Q 003449 450 --CKPDIVTWNTLLAVFGQ--NGMDSEVSGVFKEMKRAGFIPERDTFNTLISA---YSRCGSFDQAMSIYKRMLEAGVTP 522 (819)
Q Consensus 450 --~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~ 522 (819)
......++..+..++.. .+++++|++.|++..+.... +...+..+... +...++.++|++.+++..+....
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 01124455555544444 34567777777777665322 34444444333 33445666777777776665433
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003449 523 DLSTYNAVLAALAR----GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLK 598 (819)
Q Consensus 523 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 598 (819)
+...+..+...+.. .|++++|.+++++..... +.+...+..+...|...|++++|+..++++++.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 44555544444333 345667777777666542 3455566667777777777777777777776643 34455555
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 003449 599 TLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE 678 (819)
Q Consensus 599 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 678 (819)
.++.+|...+... .... ...........+..++|...++...+.. +.+...+..+...|...|
T Consensus 286 ~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 5555443211100 0000 0000001111233677888888887653 445566888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003449 679 NFARAEDVLREILAKGIKPDI--ISYNTVIF-AYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALD 755 (819)
Q Consensus 679 ~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 755 (819)
++++|++.|+++++....+.. ..+..+.. .+.+.|++++|+..|++.++ +.|+...... ....+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---------MKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH---------HHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH---------HHHHHHH
Confidence 999999999999986433321 22333332 34578899999999999988 5555433222 2344566
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 756 VVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 756 ~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
++++.++. .| +..+|..++.+|...|++++|++.++++++.+|.++..
T Consensus 418 ~~~~~l~~--~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 418 IAKMRLSK--NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp HHHHHHHH--CC-CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 67777764 45 78899999999999999999999999999999887654
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=1.4e-17 Score=173.86 Aligned_cols=263 Identities=11% Similarity=0.003 Sum_probs=177.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 003449 527 YNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSK 606 (819)
Q Consensus 527 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 606 (819)
+..+...+.+.|++++|+.+|+++.+.. +.+..++..+..+|...|++++|+..+++++... +.+...+..++.+|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 4444444555555555555555554432 2334445555555555555555555555554432 3334455555555555
Q ss_pred CCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHH
Q 003449 607 SDLLMDTERAFLELKKKGFS---------PDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTP--SLTTYNTLMYMYS 675 (819)
Q Consensus 607 ~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~ 675 (819)
.|++++|...|+++.+.... .....+..+...+...|++++|.+.++++.+.. +. +..++..++..|.
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHHH
Confidence 55555555555555442100 012334456778889999999999999998864 33 6888999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 003449 676 RSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEAL 754 (819)
Q Consensus 676 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 754 (819)
..|++++|++.|+++++.. +.+..+|..++.+|...|++++|...|+++.+. .| +..++..++.+|...|++++|+
T Consensus 225 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999863 336889999999999999999999999999985 34 4678999999999999999999
Q ss_pred HHHHHHHHcCCCC-------------CHHHHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 003449 755 DVVRYMIKQGCKP-------------NQNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 755 ~~~~~~~~~g~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
..++++++. .| +..+|..++.++...|+.+.|.+..++.++
T Consensus 302 ~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 302 SNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 999999873 22 267899999999999999999888776443
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=5.9e-17 Score=169.44 Aligned_cols=309 Identities=12% Similarity=0.016 Sum_probs=194.1
Q ss_pred HHHccCCHHHHHH-HHHHHhhCCC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003449 428 MHGNRGNFVEMMK-VFDEINKCNC-KP--DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCG 503 (819)
Q Consensus 428 ~~~~~g~~~~A~~-~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 503 (819)
.+...|++++|.+ .+++...... .| +...+..+...+...|++++|...|+++.+... .+..++..+...+...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCc
Confidence 3445566666666 5554443211 01 233455555666666666666666666655432 24455555566666666
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCCHHHHHHHH
Q 003449 504 SFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNEL-TYSSLLHAYANGREIDQMLALS 582 (819)
Q Consensus 504 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~ 582 (819)
++++|.+.|+++.+.... +..++..+...+...|++++|.+.++++.... |+.. .+..+... ...
T Consensus 113 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~---- 178 (368)
T 1fch_A 113 QELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG-------AGG---- 178 (368)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC-------------------
T ss_pred CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH-------hhh----
Confidence 666666666665554322 45555555556666666666666666555432 2111 11000000 000
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 003449 583 EEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSP-DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFT 661 (819)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 661 (819)
.........+...+ ..|++++|...|+++.+..... +..++..++..|...|++++|.+.++++.+.. +
T Consensus 179 --------~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~ 248 (368)
T 1fch_A 179 --------AGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-P 248 (368)
T ss_dssp ---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred --------hcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 00000111233333 7788999999999988764322 57888999999999999999999999998764 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---------
Q 003449 662 PSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP--------- 732 (819)
Q Consensus 662 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--------- 732 (819)
.+..++..++.++...|++++|+..++++++.. +.+...+..++.+|.+.|++++|...|+++.+.....
T Consensus 249 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 327 (368)
T 1fch_A 249 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGA 327 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccc
Confidence 567889999999999999999999999998763 3368889999999999999999999999998732111
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 733 -DVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 733 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
...+|..++.++...|++++|..++++.++
T Consensus 328 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 328 MSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred hhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 157899999999999999999998876543
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=3.1e-16 Score=156.36 Aligned_cols=254 Identities=15% Similarity=0.108 Sum_probs=162.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHH
Q 003449 535 ARGGMWEQSEKIFAEMKGGRCKPNE--LTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMD 612 (819)
Q Consensus 535 ~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 612 (819)
...|++..|+..++..... .|+. .....+..+|...|+++.|+..++. ..+++...+..++..+...++.++
T Consensus 10 ~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3456666666666554432 2322 2334455666666666666654432 124455566666666677777777
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003449 613 TERAFLELKKKGFSP-DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREIL 691 (819)
Q Consensus 613 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 691 (819)
|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777766654333 455566666777777777777777765 3566677777777777777777777777777
Q ss_pred HCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-
Q 003449 692 AKGIKPDIISY---NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP- 767 (819)
Q Consensus 692 ~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p- 767 (819)
+.. |+.... ..++..+...|++++|..+|+++.+. ...+...++.++.++...|++++|+..++++++. .|
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~ 232 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSG 232 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 642 442211 12223344457778888888777775 2335667777777777888888888888887773 45
Q ss_pred CHHHHHHHHHHHHhcCcHHH-HHHHHHHhhhcCCCCCHH
Q 003449 768 NQNTYNSIVDGYCKLNQRYE-AITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 768 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~ 805 (819)
++.++..++..+...|+.++ +.++++++.+.+|+++..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 66777777777777777765 457777788777777554
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=2.1e-16 Score=159.88 Aligned_cols=239 Identities=11% Similarity=0.087 Sum_probs=65.3
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 003449 220 SNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAA 299 (819)
Q Consensus 220 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 299 (819)
+.|++++|.++++++. +..+|..++.++.+.| ++++|++.|.+. +|..+|..++.++...|++++|.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g-~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKG-MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcC-CHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 3444555555555552 1224555555555555 455555555331 24445555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003449 300 GVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIG 379 (819)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 379 (819)
..++...+. .++..+.+.|+.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 544444332 2334455555556666666555555553 134445555555555666666666555544
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 003449 380 ITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNT 459 (819)
Q Consensus 380 ~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 459 (819)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|+..|+++.|......+ .........
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHH
Confidence 13555555555556665555555555 14555555555555555555554333321 122222334
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003449 460 LLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR 501 (819)
Q Consensus 460 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 501 (819)
++..|.+.|++++|..+++...... +-....|+-+...|++
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 5555555555555555555554433 2234445555444444
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=6e-17 Score=169.10 Aligned_cols=267 Identities=9% Similarity=-0.055 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003449 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAY 569 (819)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 569 (819)
..+..+...+.+.|++++|.++|+++.+.... +...+..+...+...|++++|+..|+++.+.. +.+..++..+..+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34666666777777777777777777665433 56667777777777777777777777776542 33466677777777
Q ss_pred HccCCHHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 003449 570 ANGREIDQMLALSEEIYSGIIE---------PHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFS-PDIPTLNAMISIY 639 (819)
Q Consensus 570 ~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 639 (819)
...|++++|+..+++++..... .....+..++..+...|++++|...|+++.+.... .+..++..+...|
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 7777777777777777653210 01223345678889999999999999999886432 1688899999999
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003449 640 GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEAS 719 (819)
Q Consensus 640 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 719 (819)
...|++++|.+.++++.+.. +.+..+|..++.+|...|++++|+..|+++++.. +.+..++..++.+|...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999998864 5678899999999999999999999999999863 335889999999999999999999
Q ss_pred HHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003449 720 RIFSEMRDSGLV-----------PDVITYNTFVASYAADSLFVEALDVVRYM 760 (819)
Q Consensus 720 ~~~~~~~~~g~~-----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 760 (819)
..|+++.+.... .+...|..+..++...|+.+.|..+.++.
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 999999873111 02568899999999999999888776653
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=2.7e-16 Score=161.30 Aligned_cols=283 Identities=12% Similarity=0.022 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003449 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAY 569 (819)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 569 (819)
..+..+...+...|++++|..+|+++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34566677777778888888888877765433 66677777777777788888888777776642 34556666677777
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHhcCChHH
Q 003449 570 ANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAM-IS-IYGRRQMVAK 647 (819)
Q Consensus 570 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~ 647 (819)
...|++++|...++++...... +...+..+... .++......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHH
Confidence 7777777777777776654311 11111111000 0111111122 22 3667788999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003449 648 TNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 648 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 727 (819)
|.+.++++.+.. +.+...+..++..|...|++++|.+.++++.+.. +.+...+..++..+...|++++|.+.++++.+
T Consensus 157 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999988764 4577888999999999999999999999998763 33578899999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCcHHHHHHHHHHhh
Q 003449 728 SGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-----------NQNTYNSIVDGYCKLNQRYEAITFVNNLS 796 (819)
Q Consensus 728 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 796 (819)
.. ..+...+..++.++...|++++|+..++++++..... +..+|..++.++.+.|++++|...+++++
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 53 2356788899999999999999999999998742121 36788899999999999999999998876
Q ss_pred hcCC
Q 003449 797 KLDP 800 (819)
Q Consensus 797 ~~~p 800 (819)
+..|
T Consensus 314 ~~~~ 317 (327)
T 3cv0_A 314 EPFA 317 (327)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 6543
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=9e-16 Score=155.33 Aligned_cols=282 Identities=13% Similarity=0.178 Sum_probs=116.0
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003449 326 KCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMK 405 (819)
Q Consensus 326 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~ 405 (819)
+.|++++|.++++++. +..+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 6677888888888872 2347888888888888888888888653 466688888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003449 406 VFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGF 485 (819)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 485 (819)
.++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 77766653 3456778888888888888888777764 366678888888888888888888888865
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003449 486 IPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSL 565 (819)
Q Consensus 486 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 565 (819)
..|..++.++.+.|++++|.+.++.+ .++.+|..++.+|...|+++.|......+. ..+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 36788888888888888888888877 267888888888888888888866554422 233334467
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHH
Q 003449 566 LHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKS--DLLMDTERAFLELKKKGFSP------DIPTLNAMIS 637 (819)
Q Consensus 566 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~ 637 (819)
+..|.+.|.+++|+.+++..+... +.....+..+..+|++- +++.+..+.|..-. .+++ +...|..++.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHH
Confidence 777888888888888888877654 55566666666666554 33444444443211 1111 2345677777
Q ss_pred HHHhcCChHHHHHH
Q 003449 638 IYGRRQMVAKTNEI 651 (819)
Q Consensus 638 ~~~~~~~~~~A~~~ 651 (819)
.|...++++.|...
T Consensus 291 ly~~~~e~d~A~~t 304 (449)
T 1b89_A 291 LYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHhhchHHHHHHH
Confidence 77777777777653
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=1.3e-15 Score=151.97 Aligned_cols=277 Identities=13% Similarity=0.070 Sum_probs=203.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 003449 497 SAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREID 576 (819)
Q Consensus 497 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 576 (819)
+-....|++..|+..++................+..+|...|++++|+..++.. .+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 344566788888877766544321111234455667788888888888755441 3556667777777888888888
Q ss_pred HHHHHHHHHHhCCC-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003449 577 QMLALSEEIYSGII-EPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFM 655 (819)
Q Consensus 577 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 655 (819)
+|++.+++++..+. +.+...+..++.++...|++++|...+++ +.+...+..++..+.+.|++++|.+.++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888888877653 44566777778888888888888888876 357788888889999999999999999999
Q ss_pred hhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003449 656 NDSGFTPSLTTY---NTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP 732 (819)
Q Consensus 656 ~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 732 (819)
.+.. |+.... ..++..+...|++++|..+|+++++. .+.+...++.++.++.+.|++++|.+.++++++... -
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-G 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C
Confidence 8763 443211 22334445568999999999999986 345788999999999999999999999999988532 2
Q ss_pred CHHHHHHHHHHHHhcCChHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 003449 733 DVITYNTFVASYAADSLFVE-ALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFV 792 (819)
Q Consensus 733 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 792 (819)
+..++..++..+...|+.++ +.++++++++ +.|+... +.+...+.+.++++..-|
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~---~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF---IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH---HHHHHHHHHHHHHHHHHc
Confidence 66788999999999999876 5688999988 4675432 334455667777776554
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=4.5e-15 Score=160.97 Aligned_cols=347 Identities=6% Similarity=-0.087 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CC-CCHHHHHHHHHHHHc--cCCHHHHHHHHHHHhhCCCCCCHH
Q 003449 385 FTYTTLLSGFEKAGKDESAMKVFEEMRSA-----G-CK-PNICTFNALIKMHGN--RGNFVEMMKVFDEINKCNCKPDIV 455 (819)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~-~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~ 455 (819)
.+|..+...|...|++++|...++++.+. + .. ....++..+..++.+ .+++++|++.|++..+.. +-+..
T Consensus 95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~ 173 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPE 173 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHH
Confidence 34444555555555555555554444321 0 00 112333333333332 345666666666665542 22344
Q ss_pred HHHHHHHH---HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHH
Q 003449 456 TWNTLLAV---FGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR----CGSFDQAMSIYKRMLEAGVTPDLSTYN 528 (819)
Q Consensus 456 ~~~~li~~---~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 528 (819)
.+..+..+ +...++.++|++.+++..+.... +...+..+...+.. .|++++|.+++++....... +...+.
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~ 251 (472)
T 4g1t_A 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLR 251 (472)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHH
Confidence 44433333 33455666667766666655322 44444444444433 35666777777777665433 566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCC
Q 003449 529 AVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSD 608 (819)
Q Consensus 529 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 608 (819)
.+...|...|++++|+..+++..+.. +.+..++..+..+|...+....+ .. .. .........+
T Consensus 252 ~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~---------~~-~~------~~~~~~~~~~ 314 (472)
T 4g1t_A 252 SAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMN---------LR-EN------GMYGKRKLLE 314 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHH---------C-------------CHHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhh---------HH-HH------HHHHHHHHHh
Confidence 77777888888888888888777642 33455555555554321111000 00 00 0000011122
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH--HHHHHHH-HHHhcCCHHHHHH
Q 003449 609 LLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLT--TYNTLMY-MYSRSENFARAED 685 (819)
Q Consensus 609 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~g~~~~A~~ 685 (819)
..+.|...++...+.. +.+..++..+...|...|++++|.+.|++..+....+... .+..+.. .....|++++|+.
T Consensus 315 ~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~ 393 (472)
T 4g1t_A 315 LIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393 (472)
T ss_dssp HHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred hHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3566777777777653 2245667788888999999999999999988764222211 2233332 2356789999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003449 686 VLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQG 764 (819)
Q Consensus 686 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 764 (819)
.|++.++. .|+...... ..+.+.+++++.++.+ ..+..+|..++.+|...|++++|++.++++++.|
T Consensus 394 ~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 394 HFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999885 444322221 2344556666666543 2356789999999999999999999999999854
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=9.8e-18 Score=182.84 Aligned_cols=118 Identities=18% Similarity=0.170 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH---CCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 003449 279 SYTFNTLISCCRRGSLHEEAAGVFEEMKL---AGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSL 355 (819)
Q Consensus 279 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 355 (819)
..||+++|++||+.|++++|.++|++|.+ .|+.||+.|||+||.+||+.|++++|.++|++|.+.|+.||.+|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34566666666666666666666655543 356666666666666666666666666666666666666666666666
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003449 356 ISAYARDGL-LEEAMELKTQMVEIGITPDVFTYTTLLSGFEK 396 (819)
Q Consensus 356 i~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~ 396 (819)
|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 666666665 35666666666666666666666666654443
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=1.5e-15 Score=155.71 Aligned_cols=282 Identities=8% Similarity=-0.074 Sum_probs=218.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003449 453 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLA 532 (819)
Q Consensus 453 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 532 (819)
+...+..+...+...|++++|..+|+++.+.... +...+..+...+...|++++|.+.++++.+.... +...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 3445677888999999999999999999887533 7788899999999999999999999999987543 7888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHhcCCCH
Q 003449 533 ALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLIL--VYSKSDLL 610 (819)
Q Consensus 533 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~ 610 (819)
.+...|++++|.+.++++.+.. +.+...+..+.... ++......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 9999999999999999998763 11222222221110 11111112212 36667888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003449 611 MDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREI 690 (819)
Q Consensus 611 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 690 (819)
++|...++++.+.. +.+...+..++..+...|++++|.+.++++.+.. +.+...+..++.++...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888887764 3367888889999999999999999999988764 556788999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003449 691 LAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-----------DVITYNTFVASYAADSLFVEALDVVRY 759 (819)
Q Consensus 691 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 759 (819)
.+.. +.+...+..++.+|...|++++|.+.++++.+..... +...+..++.++...|++++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 8763 3367889999999999999999999999998742221 356888999999999999999999876
Q ss_pred HHH
Q 003449 760 MIK 762 (819)
Q Consensus 760 ~~~ 762 (819)
+++
T Consensus 312 ~l~ 314 (327)
T 3cv0_A 312 NVE 314 (327)
T ss_dssp CSH
T ss_pred HHH
Confidence 654
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.9e-17 Score=180.65 Aligned_cols=120 Identities=15% Similarity=0.234 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003449 207 DVYAYTSLITTYASNGRYREAVMVFKKME---EEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFN 283 (819)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~ 283 (819)
-..+|++||++||+.|++++|..+|++|. +.|+.||++|||+||++||+.| ++++|.++|++|.+.|+.||..|||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G-~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG-AFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 34567777777777777777777776655 3467777777777777777777 6777777777777777777777777
Q ss_pred HHHHHHHcCCC-HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhC
Q 003449 284 TLISCCRRGSL-HEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKC 327 (819)
Q Consensus 284 ~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 327 (819)
++|.++|+.|+ .++|.++|++|...|+.||..+|++++.++.+.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 77777777776 466777777777777777777777776554443
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=1.1e-14 Score=138.51 Aligned_cols=198 Identities=13% Similarity=-0.032 Sum_probs=144.3
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003449 592 PHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLM 671 (819)
Q Consensus 592 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 671 (819)
++...+..++..+...|++++|...|++.++.. +.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 344455566666666777777777777766653 2356667777777777777777777777777653 44566677777
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003449 672 YMYSRS-----------ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTF 740 (819)
Q Consensus 672 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 740 (819)
.++... |++++|+..++++++... -+...+..+..+|...|++++|+..|+++++.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 777777 999999999999998632 257888899999999999999999999999876 678899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhh
Q 003449 741 VASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLS 796 (819)
Q Consensus 741 ~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 796 (819)
+.++...|++++|+..++++++. .| +...+..++..+...|++++|+..+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999984 56 78889999999999999999999988764
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=1.4e-13 Score=136.68 Aligned_cols=231 Identities=13% Similarity=0.019 Sum_probs=180.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003449 558 NELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSK----SDLLMDTERAFLELKKKGFSPDIPTLN 633 (819)
Q Consensus 558 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 633 (819)
+..++..+...|...+++++|+..+++..+ +.+...+..++..+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 344455555556666666666666666665 2334555566666666 777777777777777664 677777
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003449 634 AMISIYGR----RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR----SENFARAEDVLREILAKGIKPDIISYNTV 705 (819)
Q Consensus 634 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 705 (819)
.+...|.. .+++++|++.+++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 88888888 888999999888888764 67788888888888 899999999999998864 56777888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003449 706 IFAYCR----NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 777 (819)
Q Consensus 706 ~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 777 (819)
...|.. .+++++|.+.|++..+.+ +...+..++..|.. .+++++|+.+++++.+.+ +...+..++.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888888 899999999999988853 56788888999998 999999999999999853 3677888999
Q ss_pred HHHh----cCcHHHHHHHHHHhhhcCCCCCHHH
Q 003449 778 GYCK----LNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 778 ~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
.|.. .|++++|.++++++.+.+|++....
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9988 8999999999999999988764433
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.6e-14 Score=142.24 Aligned_cols=223 Identities=12% Similarity=0.063 Sum_probs=159.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 003449 562 YSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGF--SPD----IPTLNAM 635 (819)
Q Consensus 562 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l 635 (819)
+..+...+...|++++|+..++++++.. .+...+..++.++...|++++|...++++.+... .++ ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3333444444444444444444444433 3334444444555555555555555555443211 111 4667778
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003449 636 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM 715 (819)
Q Consensus 636 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 715 (819)
...+...|++++|.+.++++.+. .|+. ..+...|++++|...++++.... +.+...+..++..+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 88888888888888888888875 3443 34666788999999999988753 22467888888999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003449 716 KEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNN 794 (819)
Q Consensus 716 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 794 (819)
++|.+.++++.+.. ..+...+..++.++...|++++|+..++++++. .| +...|..++.+|.+.|++++|...+++
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999998853 235778889999999999999999999999985 45 688899999999999999999999999
Q ss_pred hhhcC
Q 003449 795 LSKLD 799 (819)
Q Consensus 795 ~~~~~ 799 (819)
+.+.+
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99998
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.65 E-value=1.5e-14 Score=154.42 Aligned_cols=220 Identities=13% Similarity=0.060 Sum_probs=120.6
Q ss_pred HHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003449 561 TYSSLLHAYANGR---EIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKS----DLLMDTERAFLELKKKGFSPDIPTLN 633 (819)
Q Consensus 561 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~ 633 (819)
.+..+...|...| +.++|+..+++..+.+ .+....+..++..|... +++++|...|++.. .| +...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHH
Confidence 4444555555555 5555555555555544 33333334444444433 45666666666655 22 444555
Q ss_pred HHHHH-H--HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003449 634 AMISI-Y--GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE-----NFARAEDVLREILAKGIKPDIISYNTV 705 (819)
Q Consensus 634 ~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l 705 (819)
.+... + ...+++++|.+.|++..+.| +...+..+...|. .| ++++|.++|++.. .| +...+..|
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHH
Confidence 55554 3 34667777777777766654 4555556666655 34 7777777777666 32 45566666
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003449 706 IFAYCR----NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 777 (819)
Q Consensus 706 ~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 777 (819)
...|.. ..++++|.++|++..+.|. ......++..|.. ..+.++|..+++++.+.|. ++.......+.
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~ 400 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLE 400 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHH
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHH
Confidence 665554 2367777777777766542 3345556655553 3467777777777776552 22222212222
Q ss_pred HHHhcCcHHHHHHHHHHhhh
Q 003449 778 GYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 778 ~~~~~g~~~~A~~~~~~~~~ 797 (819)
.....++..+|...+++..+
T Consensus 401 ~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 401 APLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp TTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHH
Confidence 22233455666666655443
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=4.2e-14 Score=150.82 Aligned_cols=266 Identities=11% Similarity=0.033 Sum_probs=169.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH----HHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHH
Q 003449 473 VSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAM----SIYKRMLEAGVTPDLSTYNAVLAALARGG---MWEQSEK 545 (819)
Q Consensus 473 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~ 545 (819)
+.+.+......| +......+...|...+.++++. .+++..... +...+..+...|...| +.++|++
T Consensus 128 a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~ 200 (452)
T 3e4b_A 128 AQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLK 200 (452)
T ss_dssp HHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHH
Confidence 334444444333 2334555566666666443333 333333222 2336667777777777 7778888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--hcCCCHHHHHHHHH
Q 003449 546 IFAEMKGGRCKPNELTYSSLLHAYANG----REIDQMLALSEEIYSGIIEPHAVLLKTLILV-Y--SKSDLLMDTERAFL 618 (819)
Q Consensus 546 ~~~~m~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~ 618 (819)
.|++..+.+ .++...+..+...|... +++++|+..|++.. +.+...+..+... + ...+++++|...|+
T Consensus 201 ~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 201 QMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 888777765 44555555566666554 67888888888876 3345555666665 3 45788888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 003449 619 ELKKKGFSPDIPTLNAMISIYGRRQ-----MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR----SENFARAEDVLRE 689 (819)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 689 (819)
+..+.| +...+..|...|. .| ++++|.+.|++.. . -+...+..+...|.. ..++++|..+|++
T Consensus 276 ~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 276 NGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 888765 6777777877776 44 8899999998877 3 366677777777766 4489999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 690 ILAKGIKPDIISYNTVIFAYCR----NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 690 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
..+.| +......|..+|.. ..+.++|..+|+...+.|.. +.......+......++.++|..+.++..+
T Consensus 348 Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 348 AARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 98875 34456666766664 45789999999998887632 222111222222233456667776666554
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=6.9e-14 Score=138.95 Aligned_cols=237 Identities=13% Similarity=0.047 Sum_probs=164.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHh
Q 003449 564 SLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSP--DIPTLNAMISIYGR 641 (819)
Q Consensus 564 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 641 (819)
.....+...|++++|+..++++++.. +.+...+..++.++...|++++|...++++.+....+ ....+..+...+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 33444555555555555555555543 2233345555556666666666666666665522111 23446777777888
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003449 642 RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRI 721 (819)
Q Consensus 642 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 721 (819)
.|++++|++.+++..+.. +.+..++..+..+|...|++++|+..++++++.. +.+...|..+...+...+++++|.+.
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877753 4455778888888888888888888888887752 33567777777344445689999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHhcCcHHHHHH
Q 003449 722 FSEMRDSGLVP-DVITYNTFVASYAADSL---FVEALDVVRYMIKQG-CKPN------QNTYNSIVDGYCKLNQRYEAIT 790 (819)
Q Consensus 722 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g-~~p~------~~~~~~l~~~~~~~g~~~~A~~ 790 (819)
++++.+. .| +...+..++.++...|+ +++|+..++++++.. -.|+ ..+|..++..|...|++++|..
T Consensus 165 ~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 165 FVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998884 33 35677788888888887 888898888887631 1133 2577889999999999999999
Q ss_pred HHHHhhhcCCCCCHH
Q 003449 791 FVNNLSKLDPHVTKE 805 (819)
Q Consensus 791 ~~~~~~~~~p~~~~~ 805 (819)
.++++++.+|+++..
T Consensus 243 ~~~~al~~~p~~~~a 257 (272)
T 3u4t_A 243 AWKNILALDPTNKKA 257 (272)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCccHHHH
Confidence 999999999988544
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=6.6e-14 Score=137.80 Aligned_cols=223 Identities=10% Similarity=0.005 Sum_probs=149.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--CC----HHHHHHH
Q 003449 527 YNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIE--PH----AVLLKTL 600 (819)
Q Consensus 527 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 600 (819)
+..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|+..++++++.... ++ ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444444444444444444433 33444444444444444444444444444432110 01 3555666
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 003449 601 ILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENF 680 (819)
Q Consensus 601 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 680 (819)
+.++...|++++|...|+++.+.. |+. ..+...|++++|.+.++.+.... +.+...+..++..+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 666777777777777777766642 332 34555677888888888888753 33456788888889999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003449 681 ARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYM 760 (819)
Q Consensus 681 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 760 (819)
++|...++++++.. +.+...+..++.+|...|++++|...++++.+.. ..+...+..++.++...|++++|...++++
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999998763 3367888899999999999999999999998853 224678889999999999999999999998
Q ss_pred HHc
Q 003449 761 IKQ 763 (819)
Q Consensus 761 ~~~ 763 (819)
++.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 873
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=1.1e-13 Score=142.63 Aligned_cols=245 Identities=9% Similarity=0.079 Sum_probs=171.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003449 561 TYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDL-LMDTERAFLELKKKGFSPDIPTLNAMISIY 639 (819)
Q Consensus 561 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 639 (819)
.|..+...+...|++++|+..+++++... +.+...+..++.++...|+ +++|+..|+++++... .+...|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 44445555555666666666666665543 4445566666666666665 7777777777766542 2677788888888
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHH
Q 003449 640 GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR-NGRMKEA 718 (819)
Q Consensus 640 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A 718 (819)
...|++++|+..++++++.. +-+...|..+..++...|++++|+..++++++... -+...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHH
Confidence 88888888888888888764 45677788888888888888888888888887642 257788888888888 5555777
Q ss_pred -----HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC------
Q 003449 719 -----SRIFSEMRDSGLVP-DVITYNTFVASYAADS--LFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLN------ 783 (819)
Q Consensus 719 -----~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g------ 783 (819)
++.++++++. .| +...|..++.++...| ++++|++.++++ + ..| +...+..++++|.+.|
T Consensus 255 ~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 255 VLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccc
Confidence 4778887773 44 4557778888888877 588888888887 4 345 5677788888888764
Q ss_pred ---cHHHHHHHHHHh-hhcCCCCCHHHHHHHHHHHH
Q 003449 784 ---QRYEAITFVNNL-SKLDPHVTKELECKLSDRIA 815 (819)
Q Consensus 784 ---~~~~A~~~~~~~-~~~~p~~~~~~~~~l~~~l~ 815 (819)
.+++|+++++++ .+.+|... ..|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~-~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRK-EYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGH-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhH-HHHHHHHHHHH
Confidence 258888888888 78888763 34444444443
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=4.1e-13 Score=131.59 Aligned_cols=207 Identities=10% Similarity=0.010 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 003449 594 AVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYM 673 (819)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 673 (819)
...+..++..+...|++++|...|+++.+.. +.+...+..++..+...|++++|.+.++++.+.. +.+...+..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556677778888888888888888887764 3367788888999999999999999999988764 4577888889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 003449 674 YSRSENFARAEDVLREILAKGIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVE 752 (819)
Q Consensus 674 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 752 (819)
|...|++++|.++++++.+.+..| +...+..++.+|...|++++|.+.++++.+.. ..+...+..++..+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998732334 46788888999999999999999999998853 2256788899999999999999
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 753 ALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 753 A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
|..+++++++. .| +...+..++..+.+.|++++|.++++++.+..|++...
T Consensus 194 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 194 ARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 99999999874 44 67888899999999999999999999999999987543
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=1.1e-13 Score=134.81 Aligned_cols=209 Identities=12% Similarity=0.094 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 003449 594 AVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYM 673 (819)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 673 (819)
...+..++..+...|++++|...|+++.+.. +.+...+..++..+...|++++|.+.++++.+.. +.+...+..++..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 4455666777778888888888888887653 3367788888888999999999999999888764 4577888889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003449 674 YSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEA 753 (819)
Q Consensus 674 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 753 (819)
|...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+.. ..+...+..++..+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998764 3467888899999999999999999999998853 23677888999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHH
Q 003449 754 LDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELE 807 (819)
Q Consensus 754 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 807 (819)
+..++++++.. ..+..++..++.+|.+.|++++|...++++.+.+|++....+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 231 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALH 231 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHH
Confidence 99999998852 336888999999999999999999999999999998866543
No 47
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.59 E-value=5e-11 Score=131.04 Aligned_cols=449 Identities=9% Similarity=0.036 Sum_probs=293.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHH
Q 003449 330 PKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGK---DESAMKV 406 (819)
Q Consensus 330 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~---~~~A~~~ 406 (819)
..+....|++.+.. .+-|..+|..++..+.+.+.++.+..+|+++... ++.....|...+..-.+.|. .+.+..+
T Consensus 48 ~~d~i~~lE~~l~~-np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEE-QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHH-CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 34445555555554 3458999999999999999999999999999987 55567778877888778888 9999999
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHccCCH--------HHHHHHHHHHhh-CCC-CC-CHHHHHHHHHHHHh--------
Q 003449 407 FEEMRSAG-CKPNICTFNALIKMHGNRGNF--------VEMMKVFDEINK-CNC-KP-DIVTWNTLLAVFGQ-------- 466 (819)
Q Consensus 407 ~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~-~~~~~~~li~~~~~-------- 466 (819)
|+..+... ..|+...|...+......++. +...++|+.... .|. .+ +...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99988763 136777888877766555443 334467776553 344 34 35677777765442
Q ss_pred -cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003449 467 -NGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEK 545 (819)
Q Consensus 467 -~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 545 (819)
+++.+.+..+|++++......-..+|..... +.+.-+...+.+++.+ ...+++.|..
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e---------------------~~~~y~~Ar~ 263 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGE---------------------LSAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHH---------------------HHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHH---------------------hhHHHHHHHH
Confidence 3345667777777764311111122222111 1111000011111111 0112333444
Q ss_pred HHHHHHh--CCC----C-----------C-----C---HHHHHHHHHHHHccC-------CHHHHHHHHHHHHhCCCCCC
Q 003449 546 IFAEMKG--GRC----K-----------P-----N---ELTYSSLLHAYANGR-------EIDQMLALSEEIYSGIIEPH 593 (819)
Q Consensus 546 ~~~~m~~--~~~----~-----------~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~ 593 (819)
.+.++.. .++ + | + ...|...+.--...+ ..+.+..+|++++... +..
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~ 342 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFA 342 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTC
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCC
Confidence 4433211 010 0 1 1 123444443222221 1234567788887753 567
Q ss_pred HHHHHHHHHHHhcCCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC---------CCCC
Q 003449 594 AVLLKTLILVYSKSDLLMDTE-RAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSG---------FTPS 663 (819)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~p~ 663 (819)
..++...+..+...|+.++|. .+|++.... ++.+...+..++....+.|++++|.++|+.+.... -.|+
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 888888888888889998996 999998875 34466677788888889999999999999988631 0132
Q ss_pred ------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCC
Q 003449 664 ------------LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN-GRMKEASRIFSEMRDSGL 730 (819)
Q Consensus 664 ------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~ 730 (819)
..+|...+....+.|+.+.|..+|+++.+.-.......|...+..-.+. ++.+.|.++|+..++. +
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~ 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-F 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-H
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-C
Confidence 2367778888888999999999999998751111233444444333444 4589999999999986 3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 731 VPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP--NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 731 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
.-+...|..++......|+.+.|..+|+++++....+ ....|...+..-.+.|+.+.+.++.+++.+..|+++..
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 3356667788888888999999999999999853222 34788888888899999999999999999999987643
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=1.8e-13 Score=130.16 Aligned_cols=197 Identities=14% Similarity=0.019 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003449 558 NELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMIS 637 (819)
Q Consensus 558 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 637 (819)
+...+..+...+...|++++|+..+++.++.. +.+...+..++.++...|++++|...|++.++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 33445555555555566666666665555543 3445555566666666666666666666666543 224566666666
Q ss_pred HHHhc-----------CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003449 638 IYGRR-----------QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVI 706 (819)
Q Consensus 638 ~~~~~-----------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 706 (819)
.+... |++++|+..+++..+.. +.+...+..+..++...|++++|+..|+++++.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 66666 88888888888888753 4466778888888888999999999999888775 5788888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003449 707 FAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMI 761 (819)
Q Consensus 707 ~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 761 (819)
.+|...|++++|+..|+++.+. .| +...+..++.++...|++++|+..+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888999999999999988874 33 55678888888888899999988887764
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=5e-12 Score=125.44 Aligned_cols=224 Identities=13% Similarity=-0.005 Sum_probs=165.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003449 523 DLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYAN----GREIDQMLALSEEIYSGIIEPHAVLLK 598 (819)
Q Consensus 523 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 598 (819)
+...+..+...+...|++++|+..|++..+. .+...+..+...|.. .+++++|+..+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445555555566666666666666666552 234455555556666 666666666666666543 455566
Q ss_pred HHHHHHhc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003449 599 TLILVYSK----SDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGR----RQMVAKTNEILHFMNDSGFTPSLTTYNTL 670 (819)
Q Consensus 599 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 670 (819)
.++..|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 777777777777777664 67777888888887 888888888888888865 56677778
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003449 671 MYMYSR----SENFARAEDVLREILAKGIKPDIISYNTVIFAYCR----NGRMKEASRIFSEMRDSGLVPDVITYNTFVA 742 (819)
Q Consensus 671 ~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 742 (819)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.+++..+.+ +...+..++.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888887 889999999999988864 56778888888888 899999999999988853 3667888888
Q ss_pred HHHh----cCChHHHHHHHHHHHHcC
Q 003449 743 SYAA----DSLFVEALDVVRYMIKQG 764 (819)
Q Consensus 743 ~~~~----~g~~~~A~~~~~~~~~~g 764 (819)
.|.. .+++++|+.+++++.+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8888 899999999999998854
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=1.4e-12 Score=125.24 Aligned_cols=210 Identities=10% Similarity=-0.009 Sum_probs=169.6
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003449 593 HAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMY 672 (819)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 672 (819)
+...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.++++.+.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45566677777788888888888888877653 3357778888888889999999999999888764 456778888999
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003449 673 MYSRS-ENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLF 750 (819)
Q Consensus 673 ~~~~~-g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 750 (819)
.+... |++++|...++++.+.+..|+ ...+..++.++...|++++|...++++.+... .+...+..++.++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999987322333 67788888999999999999999999988532 2467888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 751 VEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 751 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
++|..+++++++.....+...+..++..+...|+.++|..+++.+.+..|++...
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999885321467777788888889999999999999999998887544
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=5.7e-13 Score=132.31 Aligned_cols=248 Identities=9% Similarity=0.057 Sum_probs=171.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHh
Q 003449 528 NAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGII--EPHAVLLKTLILVYS 605 (819)
Q Consensus 528 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~ 605 (819)
......+...|++++|+..|+++.+.. +.+...+..+..+|...|++++|+..+++++.... ......+..++.++.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 344455556666666666666665542 22333555556666666666666666666665221 112334667777777
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003449 606 KSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAED 685 (819)
Q Consensus 606 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 685 (819)
..|++++|...|++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...+...+++++|.+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888887777653 2356788888899999999999999999888763 5566777777734444569999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCChHHHHH
Q 003449 686 VLREILAKGIKPDIISYNTVIFAYCRNGR---MKEASRIFSEMRDSG-LVPD------VITYNTFVASYAADSLFVEALD 755 (819)
Q Consensus 686 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g-~~p~------~~~~~~l~~~~~~~g~~~~A~~ 755 (819)
.|+++++.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ..+|..++..|...|++++|+.
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999863 2347788888888888888 888999999988731 1233 2478889999999999999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHh
Q 003449 756 VVRYMIKQGCKP-NQNTYNSIVDGYCK 781 (819)
Q Consensus 756 ~~~~~~~~g~~p-~~~~~~~l~~~~~~ 781 (819)
+++++++. .| +...+..+......
T Consensus 243 ~~~~al~~--~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 243 AWKNILAL--DPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHH--CTTCHHHHHHHC-----
T ss_pred HHHHHHhc--CccHHHHHHHhhhhhcc
Confidence 99999984 56 56666666554433
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=3.3e-13 Score=134.29 Aligned_cols=247 Identities=8% Similarity=-0.081 Sum_probs=132.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHH
Q 003449 536 RGGMWEQSEKIFAEMKGGRCK---PNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMD 612 (819)
Q Consensus 536 ~~g~~~~A~~~~~~m~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 612 (819)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...+++++... +.+...+..++.++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 456677777777777654211 123455666666666777777777776666543 3345566666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003449 613 TERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILA 692 (819)
Q Consensus 613 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 692 (819)
|...|+++.+.. +.+...+..++..|...|++++|.+.++++.+.. |+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 666666666543 2245556666666666666666666666666542 3333333333334455666666666655554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003449 693 KGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV--P-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQ 769 (819)
Q Consensus 693 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 769 (819)
.. +++...+ .++..+...++.++|.+.++++.+.... | +...+..++.++...|++++|+..++++++ ..|+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN 248 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchh
Confidence 32 2222222 2444555555566666666655442110 0 124555666666666666666666666665 23421
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHH
Q 003449 770 NTYNSIVDGYCKLNQRYEAITFV 792 (819)
Q Consensus 770 ~~~~~l~~~~~~~g~~~~A~~~~ 792 (819)
+...+.++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 122244455556666665554
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=6.6e-13 Score=136.72 Aligned_cols=248 Identities=8% Similarity=0.018 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003449 525 STYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGRE-IDQMLALSEEIYSGIIEPHAVLLKTLILV 603 (819)
Q Consensus 525 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 603 (819)
..|..+...+.+.|++++|+..+++++... +-+...|..+..++...|+ +++|+..+++++... +.+...+..++.+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 455566666677777777777777776643 3345667777777777775 777777777777654 4566777777777
Q ss_pred HhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCCHHH
Q 003449 604 YSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR-SENFAR 682 (819)
Q Consensus 604 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~ 682 (819)
+...|++++|+..|+++++... .+..+|..+..++.+.|++++|++.++++++.. +-+...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 8888888888888888887643 377888888888888999999999999988864 4567788888888888 555466
Q ss_pred H-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------
Q 003449 683 A-----EDVLREILAKGIKPDIISYNTVIFAYCRNG--RMKEASRIFSEMRDSGLVPDVITYNTFVASYAADS------- 748 (819)
Q Consensus 683 A-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g------- 748 (819)
| ++.++++++.. +-+...|+.+...+...| ++++|.+.+.++ +. -..+...+..++.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccch
Confidence 6 58888888753 225788888888888888 689999999887 42 2335567888999988874
Q ss_pred --ChHHHHHHHHHH-HHcCCCC-CHHHHHHHHHHHHh
Q 003449 749 --LFVEALDVVRYM-IKQGCKP-NQNTYNSIVDGYCK 781 (819)
Q Consensus 749 --~~~~A~~~~~~~-~~~g~~p-~~~~~~~l~~~~~~ 781 (819)
.+++|+++++++ ++ +.| ....|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHH
Confidence 258999999999 66 567 56777777766653
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=6.3e-13 Score=122.95 Aligned_cols=170 Identities=12% Similarity=0.027 Sum_probs=147.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003449 628 DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIF 707 (819)
Q Consensus 628 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 707 (819)
+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..+|.+.|++++|...++++.... ..+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56788889999999999999999999988864 5577888999999999999999999999998763 335778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHH
Q 003449 708 AYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRY 786 (819)
Q Consensus 708 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~ 786 (819)
.+...+++++|.+.+++..+.. .-+...+..++.++...|++++|+..++++++. .| +..+|..++.+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCHH
Confidence 9999999999999999998853 225678889999999999999999999999984 56 7889999999999999999
Q ss_pred HHHHHHHHhhhcCCCC
Q 003449 787 EAITFVNNLSKLDPHV 802 (819)
Q Consensus 787 ~A~~~~~~~~~~~p~~ 802 (819)
+|+..++++++.+|++
T Consensus 159 ~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhCCccC
Confidence 9999999999998865
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=4.4e-13 Score=133.37 Aligned_cols=229 Identities=11% Similarity=-0.014 Sum_probs=155.3
Q ss_pred HccCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003449 570 ANGREIDQMLALSEEIYSGII---EPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVA 646 (819)
Q Consensus 570 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 646 (819)
...+++++|+..++++++... +.+...+..++..+...|++++|...|+++.+.. +.+...+..++..|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 345677778888887776532 1235566777777788888888888888777654 235677777777788888888
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003449 647 KTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMR 726 (819)
Q Consensus 647 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 726 (819)
+|.+.++++.+.. +.+...+..++.+|...|++++|...++++.+. .|+.......+..+...|++++|...+++..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8888888777653 345667777777788888888888888887764 3443333334444566677888888887766
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC
Q 003449 727 DSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-----NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 727 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
... .++... ..++..+...++.++|+..++++.+. .| +..++..++..|.+.|++++|...++++.+.+|+
T Consensus 172 ~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp HHS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred hcC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 642 222222 33566666777777787777777652 22 1466777788888888888888888888888776
Q ss_pred CCHHH
Q 003449 802 VTKEL 806 (819)
Q Consensus 802 ~~~~~ 806 (819)
+....
T Consensus 248 ~~~~~ 252 (275)
T 1xnf_A 248 NFVEH 252 (275)
T ss_dssp TCHHH
T ss_pred hHHHH
Confidence 65443
No 56
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.53 E-value=1.4e-10 Score=127.45 Aligned_cols=454 Identities=11% Similarity=0.061 Sum_probs=293.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC---HHHHHHHH
Q 003449 296 EEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGL---LEEAMELK 372 (819)
Q Consensus 296 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~ 372 (819)
.+....|++.+..+ +-|..+|..++..+.+.+.++.+..+|+++... .+.....|...+....+.|. ++.+.++|
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 33444556655554 568999999999999999999999999999987 66678889999999889999 99999999
Q ss_pred HHHHHcC-CCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHHc---------
Q 003449 373 TQMVEIG-ITPDVFTYTTLLSGFEKAGKD--------ESAMKVFEEMRS-AGC-KPN-ICTFNALIKMHGN--------- 431 (819)
Q Consensus 373 ~~m~~~g-~~pd~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~--------- 431 (819)
++.+... ..|++..|..-+....+.++. +...++|+..+. .|. .++ ...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9999863 137888888777766665543 334577777654 455 443 5688888876542
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003449 432 RGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSI 511 (819)
Q Consensus 432 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 511 (819)
.++++.+.++|++++......-..+|......-...+. ..+.+++.+ ...+++.|...
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~Ar~~ 264 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHHHHH
Confidence 34578899999998864222223344333222111111 001111111 01123333333
Q ss_pred HHHHHHC--CCC---------------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCH
Q 003449 512 YKRMLEA--GVT---------------P-----D---LSTYNAVLAALARGG-------MWEQSEKIFAEMKGGRCKPNE 559 (819)
Q Consensus 512 ~~~~~~~--~~~---------------~-----~---~~~~~~l~~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~ 559 (819)
+.++... ++. | + ...|...+..-...+ ..+.+..+|++.+.. ++-..
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCH
Confidence 3332210 110 0 0 234444444333322 123455677777654 34567
Q ss_pred HHHHHHHHHHHccCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC---------CCC-
Q 003449 560 LTYSSLLHAYANGREIDQML-ALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGF---------SPD- 628 (819)
Q Consensus 560 ~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~- 628 (819)
..|...+.-+...|+.++|. .+++..+.. .+.+..++...+......|++++|..+|+.+.+... .|+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 77777777777778888886 888888764 355666777778888888888888888888775310 121
Q ss_pred -----------HHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCC
Q 003449 629 -----------IPTLNAMISIYGRRQMVAKTNEILHFMNDS-GFTPSLTTYNTLMYMYSRS-ENFARAEDVLREILAKGI 695 (819)
Q Consensus 629 -----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~ 695 (819)
...|...+....+.|..+.|..+|+.+.+. + ......|...+..-.+. ++.+.|.++|+..++. +
T Consensus 423 ~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~ 500 (679)
T 4e6h_A 423 ESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-F 500 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-H
T ss_pred hhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-C
Confidence 235677777777788899999999998875 2 22334444333333344 4589999999998876 3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003449 696 KPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP--DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYN 773 (819)
Q Consensus 696 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 773 (819)
.-+...|...+......|+.+.|+.+|++.+.....+ ....|..++..-...|+.+.+.++.+++.+. .|+..-..
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~ 578 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLE 578 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHH
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHH
Confidence 4467777788888888899999999999988753222 2246777777777889999999999999884 45444444
Q ss_pred HHHHHH
Q 003449 774 SIVDGY 779 (819)
Q Consensus 774 ~l~~~~ 779 (819)
.+++-|
T Consensus 579 ~f~~ry 584 (679)
T 4e6h_A 579 EFTNKY 584 (679)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 444444
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=1.5e-13 Score=145.90 Aligned_cols=281 Identities=11% Similarity=0.072 Sum_probs=179.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHH
Q 003449 491 TFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDL----STYNAVLAALARGGMWEQSEKIFAEMKGG----R-CKPNELT 561 (819)
Q Consensus 491 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~~ 561 (819)
.+..+...+...|++++|...|+++.+.+.. +. ..+..+...+...|++++|+..+++..+. + .......
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445556666677777777777776665322 22 35556666666667777777766665432 0 0111223
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHH
Q 003449 562 YSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGF-SPDIPTLNAMISIYG 640 (819)
Q Consensus 562 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 640 (819)
+..+...|...|++++|...+++++... .+.+- .....++..+...|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHH
Confidence 3344444444455555444444433210 00000 112335566666677
Q ss_pred hcCC-----------------hHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C
Q 003449 641 RRQM-----------------VAKTNEILHFMNDS----GFTP-SLTTYNTLMYMYSRSENFARAEDVLREILAKGIK-P 697 (819)
Q Consensus 641 ~~~~-----------------~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p 697 (819)
..|+ +++|.+.+++..+. +..+ ...++..+...|...|++++|+..+++..+.... .
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 7777 77777776665432 1111 2246778888899999999999999988753110 1
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C
Q 003449 698 D----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV-PD----VITYNTFVASYAADSLFVEALDVVRYMIKQ----G 764 (819)
Q Consensus 698 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g 764 (819)
+ ...+..++..|...|++++|.+.++++.+.... .+ ..++..++.++...|++++|..+++++++. +
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 337888889999999999999999988763110 11 357788999999999999999999998763 1
Q ss_pred CCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCC
Q 003449 765 CKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 765 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 803 (819)
..+ ...++..++..|.+.|++++|..+++++.++.+...
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 111 245788999999999999999999999999876543
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=1e-12 Score=127.85 Aligned_cols=210 Identities=11% Similarity=0.053 Sum_probs=142.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003449 561 TYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYG 640 (819)
Q Consensus 561 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 640 (819)
.|..+...+...|++++|...+++++... +.+...+..++.++...|++++|...++++.+.. +.+...+..++..+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 34444444555555555555555555432 3345555556666666666666666666666543 235677777888888
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003449 641 RRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASR 720 (819)
Q Consensus 641 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 720 (819)
..|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888887754 4567778888888889999999999999888753 3367788888889999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003449 721 IFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 721 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 777 (819)
.++++.+.. ..+..++..++.++...|++++|...++++++. .| +...+..+..
T Consensus 181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCHHHHHHHTC
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchHHHHHHHHH
Confidence 999988753 235678888899999999999999999999884 45 4555554443
No 59
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=8.3e-12 Score=122.16 Aligned_cols=202 Identities=10% Similarity=0.001 Sum_probs=142.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003449 562 YSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGR 641 (819)
Q Consensus 562 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 641 (819)
+..+...+...|++++|...+++++... +.+...+..++.++...|++++|...++++.+.. +.+...+..++..|..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 3444444445555555555555544432 3344555556666666666666666666666543 2356677778888888
Q ss_pred cCChHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003449 642 RQMVAKTNEILHFMNDSGFTP-SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASR 720 (819)
Q Consensus 642 ~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 720 (819)
.|++++|.+.++++.+.+..| +...+..++.++...|++++|...++++.+.. +.+...+..++..|...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888887732234 45667788888888999999999999888753 2357788888888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003449 721 IFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQ 769 (819)
Q Consensus 721 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 769 (819)
.++++.+.. ..+...+..++..+...|++++|..+++++.+. .|+.
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~ 242 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGS 242 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTS
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCC
Confidence 999988743 235667788888888999999999999999874 4543
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=1.2e-12 Score=138.55 Aligned_cols=282 Identities=12% Similarity=0.029 Sum_probs=168.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH
Q 003449 488 ERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPD----LSTYNAVLAALARGGMWEQSEKIFAEMKGGRC-KPNELTY 562 (819)
Q Consensus 488 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~ 562 (819)
....+......+...|++++|...|+++.+.+.. + ...+..+...+...|++++|...+++...... ..+.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--- 83 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ--- 83 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc---
Confidence 3444555666666667777777777666665322 2 24455566666666666666666665542100 0000
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHH
Q 003449 563 SSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGF-SPD----IPTLNAMIS 637 (819)
Q Consensus 563 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~ 637 (819)
+.....+..++..+...|++++|...+++..+... ..+ ..++..+..
T Consensus 84 ----------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 84 ----------------------------LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135 (406)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 01122333444445555555555555544432100 011 235566666
Q ss_pred HHHhcCC--------------------hHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003449 638 IYGRRQM--------------------VAKTNEILHFMNDS----GFTP-SLTTYNTLMYMYSRSENFARAEDVLREILA 692 (819)
Q Consensus 638 ~~~~~~~--------------------~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 692 (819)
.|...|+ +++|.+.+++..+. +..+ ...++..+...|...|++++|...+++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6777777 77777777665432 1111 123567777788888888888888887764
Q ss_pred CCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 693 KGI-KPD----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGL-VPD----VITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 693 ~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
... .++ ..++..++..|...|++++|...+++..+... ..+ ..++..++..+...|++++|+.+++++++
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 210 111 34677778888888888888888888765210 011 34677788888888888888888888775
Q ss_pred cC----CCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC
Q 003449 763 QG----CKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 763 ~g----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
.. ..+ ...++..++..|...|++++|...++++.+..+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 31 111 1457778888888888888888888888776443
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=6.1e-13 Score=140.88 Aligned_cols=305 Identities=12% Similarity=0.016 Sum_probs=209.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC
Q 003449 451 KPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPE----RDTFNTLISAYSRCGSFDQAMSIYKRMLEA----GVTP 522 (819)
Q Consensus 451 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~ 522 (819)
......+......+...|++++|...|+++.+.+.. + ...+..+...+...|++++|...++++... +..+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 445667788889999999999999999999987433 3 356788899999999999999999987653 1111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCC--------------------HH
Q 003449 523 -DLSTYNAVLAALARGGMWEQSEKIFAEMKGGRC-KPN----ELTYSSLLHAYANGRE--------------------ID 576 (819)
Q Consensus 523 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~ 576 (819)
...++..+...+...|++++|...+++..+... ..+ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 245677778888889999999998888764210 011 2244444555555555 44
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003449 577 QMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSP-DIPTLNAMISIYGRRQMVAKTNEILHFM 655 (819)
Q Consensus 577 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 655 (819)
+|...+++.+.. + .+.+..+ ...++..+...|...|++++|.+.+++.
T Consensus 165 ~A~~~~~~al~~----------------------------~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 165 AAVDFYEENLSL----------------------------V---TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp HHHHHHHHHHHH----------------------------H---HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------------------------H---HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 444444333220 0 0111001 1345667777788888888888888777
Q ss_pred hhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003449 656 NDSGF-TPS----LTTYNTLMYMYSRSENFARAEDVLREILAKGIK-PD----IISYNTVIFAYCRNGRMKEASRIFSEM 725 (819)
Q Consensus 656 ~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 725 (819)
.+... .++ ..++..+...|...|++++|...+++..+.... .+ ..++..++..|...|++++|.+.+++.
T Consensus 214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 64310 112 236778888899999999999999988743100 11 567788889999999999999999998
Q ss_pred HHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCcHHH
Q 003449 726 RDSGL-VPD----VITYNTFVASYAADSLFVEALDVVRYMIKQ----GCKP-NQNTYNSIVDGYCKLNQRYE 787 (819)
Q Consensus 726 ~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~ 787 (819)
.+... ..+ ..++..++.+|...|++++|..+++++++. +..+ ...++..++..+...|+...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 76311 112 347788999999999999999999998753 2122 35677788888888887643
No 62
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=3.1e-11 Score=115.58 Aligned_cols=201 Identities=11% Similarity=-0.026 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003449 208 VYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLIS 287 (819)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~ 287 (819)
..++..+...+...|++++|...|+++.+.. +.+...+..+...|...| ++++|...++++.+... .+..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLK-VNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 3444555555555555555555555555442 123444444555555555 45555555554444321 13444444444
Q ss_pred HHHcC-CCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCH
Q 003449 288 CCRRG-SLHEEAAGVFEEMKLAGFSP-DKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLL 365 (819)
Q Consensus 288 ~~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 365 (819)
.+... |++++|...++++...+..| +...+..+...+.+.|++++|...++++.+.. +.+...+..++..+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 55555 55555555555554421112 13444555555555555555555555554431 22344455555555555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003449 366 EEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRS 412 (819)
Q Consensus 366 ~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 412 (819)
++|.+.++++.+.....+...+..+...+...|+.+.|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 55555555555432212344444444444555555555555555443
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=6.3e-13 Score=136.60 Aligned_cols=279 Identities=12% Similarity=0.037 Sum_probs=176.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHH
Q 003449 492 FNTLISAYSRCGSFDQAMSIYKRMLEAGVTPD----LSTYNAVLAALARGGMWEQSEKIFAEMKGGRC-KPNELTYSSLL 566 (819)
Q Consensus 492 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~ 566 (819)
+......+...|++++|...|+++.+.... + ...+..+...+...|++++|...+++...... ..+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------- 78 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD-------- 78 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc--------
Confidence 344455566666666666666666664322 2 24455556666666666666666665543100 000
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHh
Q 003449 567 HAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGF-SPD----IPTLNAMISIYGR 641 (819)
Q Consensus 567 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~ 641 (819)
.+.....+..++..+...|++++|...+++..+... ..+ ..++..+...+..
T Consensus 79 -----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 79 -----------------------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 001122334445555555555555555555432100 011 2355666666777
Q ss_pred cCC--------------------hHHHHHHHHHHhhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-
Q 003449 642 RQM--------------------VAKTNEILHFMNDS----GFT-PSLTTYNTLMYMYSRSENFARAEDVLREILAKGI- 695 (819)
Q Consensus 642 ~~~--------------------~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 695 (819)
.|+ +++|.+.+++.... +.. ....++..+...+...|++++|...++++.+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 777 77777777665432 111 1234677888889999999999999998874310
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc---
Q 003449 696 KPD----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGL-VPD----VITYNTFVASYAADSLFVEALDVVRYMIKQ--- 763 (819)
Q Consensus 696 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 763 (819)
..+ ..++..++..+...|++++|.+.+++..+... ..+ ..++..++..+...|++++|..+++++++.
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 011 34788888999999999999999999876311 112 347788999999999999999999998763
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCC
Q 003449 764 -GCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 764 -g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
+..+ ...++..++..|.+.|++++|...++++.+..+..
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 1111 24578899999999999999999999999887654
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=3.1e-12 Score=137.34 Aligned_cols=212 Identities=10% Similarity=-0.016 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003449 575 IDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLL-MDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILH 653 (819)
Q Consensus 575 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 653 (819)
+++++..+++..... +.+...+..++.++...|++ ++|+..|++..+.. +.+...+..+...|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455566666655432 45677788888888888888 88888888888764 2367889999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 003449 654 FMNDSGFTPSLTTYNTLMYMYSRS---------ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN--------GRMK 716 (819)
Q Consensus 654 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 716 (819)
+..+. .|+...+..+..+|... |++++|++.++++++.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99886 47778888899999998 99999999999999864 23688899999999988 9999
Q ss_pred HHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHH
Q 003449 717 EASRIFSEMRDSGLVP----DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITF 791 (819)
Q Consensus 717 ~A~~~~~~~~~~g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 791 (819)
+|++.|+++.+. .| +...|..++.+|...|++++|+..++++++. .| +...+..++..+...|++++|+..
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999984 44 6778999999999999999999999999984 56 677899999999999999999886
Q ss_pred HHHh
Q 003449 792 VNNL 795 (819)
Q Consensus 792 ~~~~ 795 (819)
+.++
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 6554
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=5e-11 Score=120.31 Aligned_cols=223 Identities=8% Similarity=-0.012 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-------cCCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003449 576 DQMLALSEEIYSGIIEPHAVLLKTLILVYS-------KSDLL-------MDTERAFLELKKKGFSPDIPTLNAMISIYGR 641 (819)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 641 (819)
++|...|++++... +.+...+..++..+. ..|++ ++|...|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 34444555554432 334444444444443 34554 6777777777763112356677777777888
Q ss_pred cCChHHHHHHHHHHhhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 003449 642 RQMVAKTNEILHFMNDSGFTPS-LT-TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC-RNGRMKEA 718 (819)
Q Consensus 642 ~~~~~~A~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A 718 (819)
.|++++|.++|+++.+. .|+ .. .|..++..+.+.|++++|..+|+++++.. +.+...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888774 343 33 67777888888888888888888888753 223444444333322 26888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 003449 719 SRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQG-CKP--NQNTYNSIVDGYCKLNQRYEAITFVNNL 795 (819)
Q Consensus 719 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 795 (819)
.++|+++++.. .-+...|..++..+...|++++|+.+++++++.. +.| ...+|..++..+.+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888887742 2255677788888888888888888888888752 344 4567778888888888888888888888
Q ss_pred hhcCCCCC
Q 003449 796 SKLDPHVT 803 (819)
Q Consensus 796 ~~~~p~~~ 803 (819)
.+..|++.
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 88888754
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=1e-12 Score=139.35 Aligned_cols=279 Identities=11% Similarity=-0.000 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCCH
Q 003449 454 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPER----DTFNTLISAYSRCGSFDQAMSIYKRMLEA----G-VTPDL 524 (819)
Q Consensus 454 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~ 524 (819)
...+..+...+...|++++|...|+++.+.+.. +. ..+..+...|...|++++|.+.+++..+. + .....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 445566778899999999999999999987433 33 46888999999999999999999998763 1 11234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHccCC-----------------HHHHHHHH
Q 003449 525 STYNAVLAALARGGMWEQSEKIFAEMKGGR-----CKPNELTYSSLLHAYANGRE-----------------IDQMLALS 582 (819)
Q Consensus 525 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 582 (819)
..+..+...+...|++++|...+++..+.. ......++..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 677888899999999999999999876531 01112344555555555555 44444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-C
Q 003449 583 EEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGF-T 661 (819)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~ 661 (819)
++.+. +.... .........+..+...|...|++++|.+.+++..+... .
T Consensus 207 ~~al~----------------------------~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 207 QENLK----------------------------LMRDL--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHH----------------------------HHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----------------------------HHHHc--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 43322 11110 00001234566777777888888888888877765310 0
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 003449 662 PS----LTTYNTLMYMYSRSENFARAEDVLREILAKGI--K---PDIISYNTVIFAYCRNGRMKEASRIFSEMRDS---- 728 (819)
Q Consensus 662 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 728 (819)
.+ ..++..+..+|...|++++|...++++++... . ....++..+...|...|++++|...+++..+.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 11 23677888899999999999999998875311 0 11567888899999999999999999998763
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003449 729 GLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 729 g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
+..+ ...++..++.+|...|++++|..+++++++.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 1247888999999999999999999999874
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.44 E-value=8.5e-12 Score=130.69 Aligned_cols=232 Identities=7% Similarity=-0.052 Sum_probs=165.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCC----CCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC-CC-----CHHHHHH
Q 003449 566 LHAYANGREIDQMLALSEEIYSGI----IEP-HAVLLKTLILVYSKSDLLMDTERAFLELKKKGF-SP-----DIPTLNA 634 (819)
Q Consensus 566 ~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-----~~~~~~~ 634 (819)
...+...|++++|+..+++.+... ..+ ...++..++.+|...|++++|...+++..+... .+ ...+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 344556677777777777665531 011 235566677777777777777777777654210 11 1346778
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHH
Q 003449 635 MISIYGRRQMVAKTNEILHFMNDSGF-TPS----LTTYNTLMYMYSRSENFARAEDVLREILAK----GI-KPDIISYNT 704 (819)
Q Consensus 635 l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~ 704 (819)
+...|...|++++|.+.+++..+..- ..+ ..++..++.+|...|++++|++.+++.++. +. .....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 88889999999999999888775310 111 236788999999999999999999998862 22 223677889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 003449 705 VIFAYCRNGRMKEASRIFSEMRDSGL---VPD-VITYNTFVASYAADSL---FVEALDVVRYMIKQGCKP-NQNTYNSIV 776 (819)
Q Consensus 705 l~~~~~~~g~~~~A~~~~~~~~~~g~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 776 (819)
++..|.+.|++++|.+.+++..+... .|. ...+..++..+...|+ +++|+.++++. +..+ ...++..++
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 346 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHH
Confidence 99999999999999999999886310 111 2245678888889998 77777777766 2334 456788999
Q ss_pred HHHHhcCcHHHHHHHHHHhhhcCC
Q 003449 777 DGYCKLNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 777 ~~~~~~g~~~~A~~~~~~~~~~~p 800 (819)
..|...|++++|..+++++.+...
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999987644
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=3.2e-11 Score=111.31 Aligned_cols=171 Identities=15% Similarity=0.084 Sum_probs=138.0
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003449 593 HAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMY 672 (819)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 672 (819)
+..+|..++..|...|++++|+..|++.++.. +.+..++..+...|.+.|++++|.+.++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45567777788888888888888888877764 2367788888888889999999999988887764 456677788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 003449 673 MYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVE 752 (819)
Q Consensus 673 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 752 (819)
.+...++++.|...++++.+.. +.+...+..+..+|.+.|++++|++.|+++.+... -+..+|..++.+|...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 8889999999999999988753 33678888889999999999999999999988532 256688899999999999999
Q ss_pred HHHHHHHHHHcCCCCCH
Q 003449 753 ALDVVRYMIKQGCKPNQ 769 (819)
Q Consensus 753 A~~~~~~~~~~g~~p~~ 769 (819)
|+..++++++ +.|+.
T Consensus 160 A~~~~~~al~--~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKK 174 (184)
T ss_dssp HHHHHHHHHH--TTHHH
T ss_pred HHHHHHHHHh--CCccC
Confidence 9999999988 45643
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=2.4e-10 Score=115.30 Aligned_cols=219 Identities=11% Similarity=0.007 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------ccCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 003449 541 EQSEKIFAEMKGGRCKPNELTYSSLLHAYA-------NGREI-------DQMLALSEEIYSGIIEPHAVLLKTLILVYSK 606 (819)
Q Consensus 541 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 606 (819)
++|..+|++..... +.+...|..++..+. ..|++ ++|..++++.+..-.+.+...+..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666776666542 345556666665554 24664 7888888888774234556677788888888
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 003449 607 SDLLMDTERAFLELKKKGFSPDIP-TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYS-RSENFARAE 684 (819)
Q Consensus 607 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~ 684 (819)
.|++++|..+|+++++.... +.. .|..++..+.+.|++++|..+|++..+.. +.+...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888875322 333 78888888888999999999999988764 344455544443322 369999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003449 685 DVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG-LVP--DVITYNTFVASYAADSLFVEALDVVRYMI 761 (819)
Q Consensus 685 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 761 (819)
++|+++++.. +-+...|..++..+.+.|++++|+.+|+++++.. +.| ....|..++..+...|++++|..+++++.
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998753 2368888899999999999999999999999853 354 35678888888889999999999999998
Q ss_pred Hc
Q 003449 762 KQ 763 (819)
Q Consensus 762 ~~ 763 (819)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=2e-11 Score=130.99 Aligned_cols=189 Identities=12% Similarity=0.036 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003449 610 LMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMV-AKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLR 688 (819)
Q Consensus 610 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 688 (819)
++++...++...... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666665543 34788899999999999999 99999999999864 4568899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CChH
Q 003449 689 EILAKGIKPDIISYNTVIFAYCRN---------GRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD--------SLFV 751 (819)
Q Consensus 689 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~--------g~~~ 751 (819)
++++. .|+...+..+...|... |++++|++.++++.+... -+...|..++.+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99985 56788999999999999 999999999999998532 2567899999999998 9999
Q ss_pred HHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 752 EALDVVRYMIKQGCKP----NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 752 ~A~~~~~~~~~~g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
+|+..++++++. .| +...|..++.+|...|++++|...++++++++|++...
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a 294 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999985 45 78899999999999999999999999999999998654
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=1.2e-11 Score=125.31 Aligned_cols=242 Identities=15% Similarity=0.154 Sum_probs=173.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC------C
Q 003449 558 NELTYSSLLHAYANGREIDQMLALSEEIYSG-------IIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKK------G 624 (819)
Q Consensus 558 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 624 (819)
+..++..+...+...|++++|...++++++. ..+.....+..++.++...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888888999999999999999998873 23445677888999999999999999999998753 2
Q ss_pred C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 003449 625 F-SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS------GFTP-SLTTYNTLMYMYSRSENFARAEDVLREILAK--- 693 (819)
Q Consensus 625 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 693 (819)
- ......+..+...|...|++++|.+.++++.+. +..| ....+..+...|...|++++|+++++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 123456788888999999999999999988864 2122 3456788889999999999999999998763
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCH-------HHHHHHHHHHHhcCChHHHHH
Q 003449 694 ---GIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMRDS-------GLVPDV-------ITYNTFVASYAADSLFVEALD 755 (819)
Q Consensus 694 ---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~p~~-------~~~~~l~~~~~~~g~~~~A~~ 755 (819)
+..| ...++..++.+|...|++++|.+.++++.+. ...+.. ..+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 2567888899999999999999999998862 111111 122333334445566777777
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC
Q 003449 756 VVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 756 ~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
.++.+... .| +..++..++.+|.+.|++++|.+++++++++.|.
T Consensus 266 ~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 266 WYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 77777652 34 5688999999999999999999999999988664
No 72
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.37 E-value=1e-11 Score=127.55 Aligned_cols=275 Identities=13% Similarity=0.052 Sum_probs=135.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHH
Q 003449 176 IAVLISMLGKEGKVSVAASLLHGLHKDGFDID----VYAYTSLITTYASNGRYREAVMVFKKMEEE----GCK-PTLITY 246 (819)
Q Consensus 176 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~ 246 (819)
+......+...|++++|...++.+.+.... + ..++..+..+|...|++++|...|++..+. +.. .....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344455666777777777777776665332 2 356667777777777777777777765432 101 123345
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHcCCC--------------------HHHHHHH
Q 003449 247 NVILNVYGKMGMPWNKIMALVEGMKSAGVK-PD----SYTFNTLISCCRRGSL--------------------HEEAAGV 301 (819)
Q Consensus 247 ~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~-p~----~~~~~~ll~~~~~~g~--------------------~~~A~~~ 301 (819)
..+...|...| ++++|...+++..+.... .+ ..++..+...+...|+ +++|.+.
T Consensus 87 ~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 87 GNLGNTLKVLG-NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc-CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 55555555555 566665555554431100 01 2234444444444444 4444444
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003449 302 FEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCL-PSIVTYNSLISAYARDGLLEEAMELKTQMVEIGI 380 (819)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 380 (819)
+++..... ...+.. .....+..+...+...|++++|.+.+++..+...
T Consensus 166 ~~~a~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 166 YEENLSLV-------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------------------------------HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 44332210 000000 1122344444555555555555555554443200
Q ss_pred C-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC-
Q 003449 381 T-PD----VFTYTTLLSGFEKAGKDESAMKVFEEMRSAG----CKP-NICTFNALIKMHGNRGNFVEMMKVFDEINKCN- 449 (819)
Q Consensus 381 ~-pd----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 449 (819)
. .+ ..++..+...+...|++++|...+++..+.. ..+ ...++..+...+...|++++|...+++.....
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 0 01 1244455555555555555555555544221 000 13345555556666666666666665553320
Q ss_pred ---C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003449 450 ---C-KPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA 483 (819)
Q Consensus 450 ---~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 483 (819)
. .....++..+...|...|++++|...+++..+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 0 011335556666666666666666666666553
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.37 E-value=4e-11 Score=125.52 Aligned_cols=230 Identities=7% Similarity=-0.054 Sum_probs=161.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC------CCCHHHHH
Q 003449 530 VLAALARGGMWEQSEKIFAEMKGGRC-KP----NELTYSSLLHAYANGREIDQMLALSEEIYSGII------EPHAVLLK 598 (819)
Q Consensus 530 l~~~~~~~g~~~~A~~~~~~m~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 598 (819)
....+...|++++|...|++..+... .+ ...++..+...|...|++++|+..+++.++... .....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 34455667777777777777664310 11 224566666677777777777777777654211 11234667
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CC-CCCHHHHH
Q 003449 599 TLILVYSKSDLLMDTERAFLELKKKGF-SPD----IPTLNAMISIYGRRQMVAKTNEILHFMNDS----GF-TPSLTTYN 668 (819)
Q Consensus 599 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~p~~~~~~ 668 (819)
.++.+|...|++++|...+++..+... ..+ ..++..+...|...|++++|.+.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 778888888888888888888764210 112 246788899999999999999999988762 22 33456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC---CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 003449 669 TLMYMYSRSENFARAEDVLREILAKGI---KP-DIISYNTVIFAYCRNGR---MKEASRIFSEMRDSGLVPD-VITYNTF 740 (819)
Q Consensus 669 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~l 740 (819)
.+..+|.+.|++++|...+++..+... .+ ....+..+...|...|+ +++|..++++. +..++ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 899999999999999999998875310 11 13335677888889998 77777777765 23332 2367789
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 003449 741 VASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 741 ~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+..|...|++++|..+++++++
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999876
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.37 E-value=3.6e-11 Score=111.07 Aligned_cols=171 Identities=12% Similarity=0.113 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003449 630 PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAY 709 (819)
Q Consensus 630 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 709 (819)
..+..+...+...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456677788888999999999999887753 4577888899999999999999999999998763 33678888899999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 003449 710 CRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAI 789 (819)
Q Consensus 710 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 789 (819)
...|++++|.+.++++.+.. ..+...+..++..+...|++++|+.+++++++.. ..+..++..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998853 3366788899999999999999999999999853 336788999999999999999999
Q ss_pred HHHHHhhhcCCCCCH
Q 003449 790 TFVNNLSKLDPHVTK 804 (819)
Q Consensus 790 ~~~~~~~~~~p~~~~ 804 (819)
..++++.+..|++..
T Consensus 165 ~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 165 PHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHCCCG
T ss_pred HHHHHHHHcCCCchh
Confidence 999999999887653
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.36 E-value=7.6e-11 Score=113.19 Aligned_cols=202 Identities=13% Similarity=0.041 Sum_probs=148.5
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003449 592 PHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLM 671 (819)
Q Consensus 592 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 671 (819)
.+...+...+..+...|++++|...|++..+....++...+..+...+...|++++|++.+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45677778888888889999999999888876543677777778888888889999998888888763 33556788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 003449 672 YMYSRSENFARAEDVLREILAKGIKPDI-------ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD---VITYNTFV 741 (819)
Q Consensus 672 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~ 741 (819)
.+|...|++++|+..+++.++... .+. ..|..+...+...|++++|++.|+++++ ..|+ ...+..++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 888888999999998888887532 234 4577777888888888888888888877 4555 34677777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 742 ASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 742 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
.+|...| ..+++++...+ ..+...+... .....|.+++|+..++++.+++|++...
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 216 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTEI 216 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence 7776544 34455555532 2233333332 3345677899999999999999998543
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.35 E-value=2.2e-11 Score=135.61 Aligned_cols=167 Identities=10% Similarity=0.043 Sum_probs=135.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003449 628 DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIF 707 (819)
Q Consensus 628 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 707 (819)
+..+++.|...|.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|++.|+++++... -+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 35678888888888888888888888888763 44567788888888888899999888888887532 24788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcH
Q 003449 708 AYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQR 785 (819)
Q Consensus 708 ~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~ 785 (819)
+|.+.|++++|++.|++.++. .| +...|..++.+|...|++++|+..++++++ +.| +...+..++.+|...|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccH
Confidence 888999999999999888874 44 456888888889999999999999999888 456 678888889999999999
Q ss_pred HHHHHHHHHhhhcCC
Q 003449 786 YEAITFVNNLSKLDP 800 (819)
Q Consensus 786 ~~A~~~~~~~~~~~p 800 (819)
++|.+.+++++++.|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999888888877644
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=8.6e-11 Score=122.65 Aligned_cols=227 Identities=11% Similarity=-0.002 Sum_probs=161.7
Q ss_pred HHHccCCHHHHHHHHHHHHhCCC--C---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC--CC---C-CHHHHHHHH
Q 003449 568 AYANGREIDQMLALSEEIYSGII--E---PHAVLLKTLILVYSKSDLLMDTERAFLELKKKG--FS---P-DIPTLNAMI 636 (819)
Q Consensus 568 ~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~---~-~~~~~~~l~ 636 (819)
.+...|++++|+..++++..... . ....++..++.+|...|+++.|...+.+..+.. .. + ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 35567777777777777665321 1 124456667777888888888888777765421 01 1 134677888
Q ss_pred HHHHhcCChHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 003449 637 SIYGRRQMVAKTNEILHFMNDS----GFTP-SLTTYNTLMYMYSRSENFARAEDVLREILA-----KGIKPDIISYNTVI 706 (819)
Q Consensus 637 ~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l~ 706 (819)
..|...|++++|.+.+++..+. +-.+ ...++..++.+|...|++++|++.+++.++ .. +....++..++
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHH
Confidence 8889999999999988887653 1111 124677889999999999999999999886 42 22367888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 003449 707 FAYCRNGRMKEASRIFSEMRDSGL---VPD-VITYNTFVASYAADSL---FVEALDVVRYMIKQGCKP-NQNTYNSIVDG 778 (819)
Q Consensus 707 ~~~~~~g~~~~A~~~~~~~~~~g~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~ 778 (819)
..|.+.|++++|...+++..+... .+. ...+..+...+...|+ +.+|+.++++. +..+ ....+..++..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHH
Confidence 999999999999999999987321 122 2345666666777788 77777777763 2233 34567789999
Q ss_pred HHhcCcHHHHHHHHHHhhhc
Q 003449 779 YCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 779 ~~~~g~~~~A~~~~~~~~~~ 798 (819)
|...|++++|...++++.+.
T Consensus 346 y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.31 E-value=1.7e-09 Score=112.68 Aligned_cols=233 Identities=12% Similarity=0.057 Sum_probs=137.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC----CCHHHHH
Q 003449 565 LLHAYANGREIDQMLALSEEIYSG----IIE--P-HAVLLKTLILVYSKSDLLMDTERAFLELKKKGFS----PDIPTLN 633 (819)
Q Consensus 565 l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~ 633 (819)
+...+...|++++|...+++.+.. +.. + ....+..++.++...|++++|...+++..+.... .....+.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 334444555555555555544331 111 1 2233445566666667777777666666542211 1234566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCC-C-HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHH
Q 003449 634 AMISIYGRRQMVAKTNEILHFMNDSGFTP-S-LTTYN----TLMYMYSRSENFARAEDVLREILAKGIKPD---IISYNT 704 (819)
Q Consensus 634 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~-~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~ 704 (819)
.+...+...|++++|...+++.....-.+ . ..... ..+..+...|++++|...+++.......+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 67777788888888888888776431111 1 11111 233446788888888888888765322111 234567
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003449 705 VIFAYCRNGRMKEASRIFSEMRDS----GLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGY 779 (819)
Q Consensus 705 l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 779 (819)
+...+...|++++|...+++..+. |..++. ..+..++.++...|++++|...++++++.. +.. .....+
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~~----g~~~~~ 332 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NRT----GFISHF 332 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH----CCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--ccc----cHHHHH
Confidence 778888889999999988887652 211122 256677788888999999999998887631 110 112233
Q ss_pred HhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 780 CKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 780 ~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
...| +....+++++....|.+...
T Consensus 333 ~~~g--~~~~~ll~~~~~~~~~~~~~ 356 (373)
T 1hz4_A 333 VIEG--EAMAQQLRQLIQLNTLPELE 356 (373)
T ss_dssp HTTH--HHHHHHHHHHHHTTCSCHHH
T ss_pred HHcc--HHHHHHHHHHHhCCCCchHH
Confidence 4444 56677777777777764333
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=1.4e-09 Score=113.38 Aligned_cols=268 Identities=9% Similarity=-0.049 Sum_probs=179.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHHHH
Q 003449 533 ALARGGMWEQSEKIFAEMKGGRCKPNEL----TYSSLLHAYANGREIDQMLALSEEIYSGII---EP--HAVLLKTLILV 603 (819)
Q Consensus 533 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~ 603 (819)
.+...|++++|...+++........+.. .+..+...+...|++++|...+++.+.... .+ ....+..++..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3444555555555555554432111111 233444455556666666666665543110 11 12335667888
Q ss_pred HhcCCCHHHHHHHHHHHHHC----CCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC----CCHHHHHHHHH
Q 003449 604 YSKSDLLMDTERAFLELKKK----GFS--PD-IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFT----PSLTTYNTLMY 672 (819)
Q Consensus 604 ~~~~~~~~~a~~~~~~~~~~----~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~ 672 (819)
+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++..+.... ....++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 99999999999999988652 221 22 345667888899999999999999988764211 12356778889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 003449 673 MYSRSENFARAEDVLREILAKGIKPD-IISYN-----TVIFAYCRNGRMKEASRIFSEMRDSGLVPD---VITYNTFVAS 743 (819)
Q Consensus 673 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~ 743 (819)
.+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+. ...+..++..
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 99999999999999999875311111 11221 233457799999999999998876332111 2356788889
Q ss_pred HHhcCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCC
Q 003449 744 YAADSLFVEALDVVRYMIKQ----GCKPNQ-NTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 800 (819)
+...|++++|...++++.+. |..++. ..+..++.++...|+.++|...++++.+..+
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 99999999999999998753 211222 3677889999999999999999999887644
No 80
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.25 E-value=2.4e-10 Score=115.63 Aligned_cols=242 Identities=17% Similarity=0.115 Sum_probs=157.0
Q ss_pred cchHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----
Q 003449 170 VLRGSVIAVLISMLGKEGKVSVAASLLHGLHKD-------GFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEE----- 237 (819)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----- 237 (819)
+....++..+...+...|++++|..+++.+.+. .......++..+..+|...|++++|...|++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345566777777888888888888888877652 23334567888888888888888888888887754
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 003449 238 -GC-KPTLITYNVILNVYGKMGMPWNKIMALVEGMKSA------GVKP-DSYTFNTLISCCRRGSLHEEAAGVFEEMKLA 308 (819)
Q Consensus 238 -~~-~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~------g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 308 (819)
+- .....++..+...|...| ++++|...++++.+. +..| ...++..+...+...|++++|.+.++++...
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRG-KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 21 223557777888888888 788888888887764 2222 3456777888888889999999888887764
Q ss_pred ------CCCC-CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHC-------CCCCCHh-h------HHHHHHHHHHcCCHHH
Q 003449 309 ------GFSP-DKVTYNALLDVYGKCRRPKEAMQVLREMKIN-------GCLPSIV-T------YNSLISAYARDGLLEE 367 (819)
Q Consensus 309 ------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~~~~~-~------~~~li~~~~~~g~~~~ 367 (819)
+..+ ...++..+...|.+.|++++|.+.++++.+. ...+... . +..+...+...+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 1122 3456778888888999999999888887652 1111111 1 2222223333445555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003449 368 AMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSA 413 (819)
Q Consensus 368 A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 413 (819)
|...+....... +.+..++..+..+|...|++++|...+++..+.
T Consensus 263 a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 263 YGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 555666555431 224457888888999999999999999887653
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.25 E-value=7.7e-10 Score=106.08 Aligned_cols=208 Identities=10% Similarity=0.015 Sum_probs=161.9
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003449 556 KPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAM 635 (819)
Q Consensus 556 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 635 (819)
..|...+......+...|++++|+..+++.++...+++...+..++.++...|++++|...|++..+.... +...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 34667888889999999999999999999998764367777777999999999999999999999987422 56788999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHH
Q 003449 636 ISIYGRRQMVAKTNEILHFMNDSGFTPSL-------TTYNTLMYMYSRSENFARAEDVLREILAKGIKPD---IISYNTV 705 (819)
Q Consensus 636 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l 705 (819)
...|...|++++|.+.+++..+.. +.+. ..|..+...+...|++++|++.|+++++. .|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 999999999999999999999864 4455 45788888999999999999999999985 444 5677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003449 706 IFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 706 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 777 (819)
..+|... +...++++...+ ..+...|.... ....+.+++|+..++++++ +.| +..+...+..
T Consensus 160 ~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 160 GVLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHHH
Confidence 8777654 444556665542 22344444333 4456779999999999998 467 4555544443
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.24 E-value=1.1e-09 Score=114.23 Aligned_cols=228 Identities=9% Similarity=-0.048 Sum_probs=157.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC---C---CCHHHHHH
Q 003449 531 LAALARGGMWEQSEKIFAEMKGGRC-KPN----ELTYSSLLHAYANGREIDQMLALSEEIYSGII---E---PHAVLLKT 599 (819)
Q Consensus 531 ~~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~---~~~~~~~~ 599 (819)
...+...|++++|+..|++..+... .++ ..++..+...|...|+++.|+..+++.++... . ....++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445567777777777777654311 112 23556666667777777777777776654211 1 12445667
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCCCCHHHHHH
Q 003449 600 LILVYSKSDLLMDTERAFLELKKK----GFSP-DIPTLNAMISIYGRRQMVAKTNEILHFMND-----SGFTPSLTTYNT 669 (819)
Q Consensus 600 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~~~~ 669 (819)
++.+|...|++++|...|++..+. +..+ ...++..+...|...|++++|.+.+++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 778888888888888888776642 1111 134577888889999999999999998876 32 333567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 003449 670 LMYMYSRSENFARAEDVLREILAKGI---KPD-IISYNTVIFAYCRNGR---MKEASRIFSEMRDSGLVPDV-ITYNTFV 741 (819)
Q Consensus 670 l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~-~~~~~l~ 741 (819)
+..+|.+.|++++|...+++..+... .+. ...+..+...|...|+ +++|+..+++. +..++. ..+..++
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 99999999999999999999886421 112 3455666677777888 77777777762 222222 3667899
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 003449 742 ASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 742 ~~~~~~g~~~~A~~~~~~~~~ 762 (819)
..|...|++++|...++++++
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999875
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.21 E-value=5.1e-10 Score=124.75 Aligned_cols=166 Identities=8% Similarity=0.007 Sum_probs=133.8
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003449 592 PHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLM 671 (819)
Q Consensus 592 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 671 (819)
.+...+..++.++.+.|++++|+..|++.++.. +.+..++..+..+|.+.|++++|++.|++..+.. +-+...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 345677778888888888888888888887764 2357788888888888899999998888888764 44577888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh
Q 003449 672 YMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLF 750 (819)
Q Consensus 672 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~ 750 (819)
.+|...|++++|++.|+++++... -+...|+.+..+|.+.|++++|++.|++.++. .| +...+..++.++...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccH
Confidence 899999999999999998887532 25788888889999999999999999998884 44 456788888889999999
Q ss_pred HHHHHHHHHHHH
Q 003449 751 VEALDVVRYMIK 762 (819)
Q Consensus 751 ~~A~~~~~~~~~ 762 (819)
++|.+.++++++
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998888888775
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.18 E-value=1.9e-09 Score=99.38 Aligned_cols=165 Identities=13% Similarity=0.053 Sum_probs=129.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003449 595 VLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMY 674 (819)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 674 (819)
..+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.++++.+.. +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345556666777777777777777766543 2356777788888888888888888888887753 45677788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003449 675 SRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEAL 754 (819)
Q Consensus 675 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 754 (819)
...|++++|.+.++++.+.. +.+...+..++..+...|++++|.+.++++.+.. ..+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 88999999999999888753 3467788888888999999999999999988753 235678888888999999999999
Q ss_pred HHHHHHHHc
Q 003449 755 DVVRYMIKQ 763 (819)
Q Consensus 755 ~~~~~~~~~ 763 (819)
.+++++++.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999998863
No 85
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.18 E-value=6.1e-10 Score=104.73 Aligned_cols=131 Identities=11% Similarity=0.036 Sum_probs=101.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 003449 668 NTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAA 746 (819)
Q Consensus 668 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 746 (819)
..+..+|.+.|++++|+..|++.++.. +-+...+..+..+|...|++++|...|+++++. .| +..++..++.+|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 348888999999999999999999864 236888999999999999999999999999984 44 56688888888876
Q ss_pred cCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCC
Q 003449 747 DSL--FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 747 ~g~--~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 803 (819)
.|+ .+.+...++.+.. ..|....+...+.++...|++++|+..+++++++.|+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 654 4455666666543 233344566778888889999999999999999999753
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.17 E-value=2.6e-09 Score=104.79 Aligned_cols=67 Identities=12% Similarity=0.161 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhc----------CcHHHHHHHHHHhhhcCCCC
Q 003449 737 YNTFVASYAADSLFVEALDVVRYMIKQGCKPN----QNTYNSIVDGYCKL----------NQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 737 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~ 802 (819)
+..++..|...|++++|+..++++++. .|+ ...+..++.+|... |++++|+..++++++..|++
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 367788899999999999999999874 343 46788888888866 88999999999999999988
Q ss_pred CHH
Q 003449 803 TKE 805 (819)
Q Consensus 803 ~~~ 805 (819)
+..
T Consensus 229 ~~~ 231 (261)
T 3qky_A 229 PLL 231 (261)
T ss_dssp THH
T ss_pred hHH
Confidence 755
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.17 E-value=3.4e-10 Score=113.01 Aligned_cols=198 Identities=16% Similarity=0.043 Sum_probs=136.6
Q ss_pred HHhcCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC---CC--CHHHHHHHHH
Q 003449 603 VYSKSDLLMDTERAFLELKKK----GFSPD-IPTLNAMISIYGRRQMVAKTNEILHFMNDSGF---TP--SLTTYNTLMY 672 (819)
Q Consensus 603 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~p--~~~~~~~l~~ 672 (819)
.|...|++++|...|.+..+. |-.++ ..+++.+...|.+.|++++|+..+++..+... .+ ...+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666666666655432 21111 34667777777788888888877777664310 11 1346788888
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHH
Q 003449 673 MYSRS-ENFARAEDVLREILAKGIKP-D----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV------ITYNTF 740 (819)
Q Consensus 673 ~~~~~-g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~------~~~~~l 740 (819)
+|... |++++|+..|++.++..... + ..++..++..|.+.|++++|+..|+++.+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 89986 99999999999988531110 1 356888899999999999999999999985332211 156788
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH--hcCcHHHHHHHHHHhhhcCCCC
Q 003449 741 VASYAADSLFVEALDVVRYMIKQGCKPNQ------NTYNSIVDGYC--KLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 741 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~------~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
+.++...|++++|+..++++++ +.|+. ..+..++..+. ..+++++|+..++++.+++|..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 8889999999999999999987 44532 23445566664 5678999999999988887755
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=4.7e-10 Score=111.69 Aligned_cols=227 Identities=15% Similarity=0.125 Sum_probs=156.5
Q ss_pred HccCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC------CCCC-CHHHHHHH
Q 003449 570 ANGREIDQMLALSEEIYS-------GIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKK------GFSP-DIPTLNAM 635 (819)
Q Consensus 570 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l 635 (819)
...|++++|+..+++.++ ...+.....+..++.++...|++++|...++++.+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345666666666665544 232344677888999999999999999999988753 2112 34568888
Q ss_pred HHHHHhcCChHHHHHHHHHHhhC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHH
Q 003449 636 ISIYGRRQMVAKTNEILHFMNDS------G-FTPSLTTYNTLMYMYSRSENFARAEDVLREILAK------GIKP-DIIS 701 (819)
Q Consensus 636 ~~~~~~~~~~~~A~~~~~~~~~~------~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~ 701 (819)
...|...|++++|.+.++++.+. . .+....++..+...|...|++++|...++++++. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999999988764 1 1223456788889999999999999999998864 1122 2567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCH-HHHHHHHHHHHhcCChHHHH------HHHHHHHHcCCCC
Q 003449 702 YNTVIFAYCRNGRMKEASRIFSEMRDS-------GLVPDV-ITYNTFVASYAADSLFVEAL------DVVRYMIKQGCKP 767 (819)
Q Consensus 702 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~p~~-~~~~~l~~~~~~~g~~~~A~------~~~~~~~~~g~~p 767 (819)
+..++.+|...|++++|..+++++.+. ...+.. ..+..+...+...+....+. ..++.... ..|
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 249 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSP 249 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCH
Confidence 888889999999999999999998863 112222 23444444444433332222 22222211 122
Q ss_pred -CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc
Q 003449 768 -NQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 768 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
...++..++..|...|++++|..+++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567889999999999999999999999875
No 89
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.15 E-value=3.1e-09 Score=100.16 Aligned_cols=187 Identities=9% Similarity=0.001 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 003449 612 DTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE----NFARAEDVL 687 (819)
Q Consensus 612 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~A~~~~ 687 (819)
+|...|++..+.| +..++..+...|...+++++|.+.|++..+.| +...+..+...|.. + ++++|.++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566777777664 77888888888888899999999999988865 56777778888777 6 899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHH
Q 003449 688 REILAKGIKPDIISYNTVIFAYCR----NGRMKEASRIFSEMRDSGLV-PDVITYNTFVASYAA----DSLFVEALDVVR 758 (819)
Q Consensus 688 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 758 (819)
++..+.| +...+..|...|.. .+++++|.++|++..+.|.. .....+..++..|.. .+++++|+.+++
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9998764 67778888888877 78899999999998875421 015688888888888 788999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc-C-----cHHHHHHHHHHhhhcCCCCCHHHHHHH
Q 003449 759 YMIKQGCKPNQNTYNSIVDGYCKL-N-----QRYEAITFVNNLSKLDPHVTKELECKL 810 (819)
Q Consensus 759 ~~~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~p~~~~~~~~~l 810 (819)
++.+. ..+...+..|+..|... | +.++|+.+++++.+.+.......+..|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~l 209 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRI 209 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 99884 34566788888888654 3 899999999999998766554444433
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.15 E-value=9.1e-09 Score=99.83 Aligned_cols=186 Identities=11% Similarity=-0.024 Sum_probs=121.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003449 613 TERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGF-TPSLTTYNTLMYMYSRSENFARAEDVLREIL 691 (819)
Q Consensus 613 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 691 (819)
|...|+++.+.+ .++..++..+..++...|++++|++++.+.+..+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666665543 34555556777777788888888888887766542 1345566677778888888888888888887
Q ss_pred HCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 692 AKGIKP-----DIISYNTVIFA--YCRNG--RMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 692 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+. .| +..+...++.+ ....| ++++|..+|+++.+. .|+..+...+..++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 44 23444445444 33334 788888888887653 34422323333377788888888888886654
Q ss_pred cC-----C---CC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 763 QG-----C---KP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 763 ~g-----~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
.. . .| |+.++..++......|+ +|.++++++.+..|+++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 20 0 24 56666566656666676 7888888888888887655
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.12 E-value=4e-09 Score=91.09 Aligned_cols=134 Identities=15% Similarity=0.250 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003449 666 TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA 745 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 745 (819)
.+..++..+...|++++|..+++++.+.+ +.+...+..++..+...|++++|.++++++.+.+ ..+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46677788888899999999999888753 2357778888888889999999999999988753 235667888888999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCC
Q 003449 746 ADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 746 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
..|++++|+.+++++.+.. ..+..++..++..+...|++++|...++++.+.+|.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999998752 2367888899999999999999999999999888753
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.09 E-value=4.2e-10 Score=99.29 Aligned_cols=130 Identities=14% Similarity=0.086 Sum_probs=102.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 003449 670 LMYMYSRSENFARAEDVLREILAKGIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAAD 747 (819)
Q Consensus 670 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~ 747 (819)
|...+...|++++|++.+++.... .| +...+..+...|.+.|++++|++.|++.++. .| +..+|..++.+|...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 345566678888999888887653 23 3566777888999999999999999999884 34 567888999999999
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHH-HHHhhhcCCCCCHH
Q 003449 748 SLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITF-VNNLSKLDPHVTKE 805 (819)
Q Consensus 748 g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~ 805 (819)
|++++|+..++++++ +.| +..+|..++..|.+.|++++|.+. ++++++++|+++..
T Consensus 79 ~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~ 136 (150)
T 4ga2_A 79 ENTDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV 136 (150)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred CchHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence 999999999999998 456 678889999999999998877664 58999999988544
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.09 E-value=2.3e-09 Score=106.92 Aligned_cols=182 Identities=12% Similarity=0.026 Sum_probs=137.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 003449 609 LLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS----GFTPS-LTTYNTLMYMYSRSENFARA 683 (819)
Q Consensus 609 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A 683 (819)
++++|...|.+. +..|...|++++|.+.+++..+. |-+++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 478888877766 34577889999999999888753 21112 45789999999999999999
Q ss_pred HHHHHHHHHCCC---CCC--HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHH
Q 003449 684 EDVLREILAKGI---KPD--IISYNTVIFAYCRN-GRMKEASRIFSEMRDSGLV-PD----VITYNTFVASYAADSLFVE 752 (819)
Q Consensus 684 ~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~~g~~~~ 752 (819)
+..+++.++... .+. ..+++.+...|... |++++|+..|++.++.... .+ ..++..++..+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999885311 111 45788899999996 9999999999999873111 01 3468899999999999999
Q ss_pred HHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 753 ALDVVRYMIKQGCKPNQ------NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 753 A~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
|+..++++++....... ..|..++.++...|++++|+..++++++++|.....
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 99999999984322211 257788999999999999999999999999986554
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.08 E-value=1.3e-09 Score=108.37 Aligned_cols=227 Identities=13% Similarity=0.083 Sum_probs=157.8
Q ss_pred HhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------C-CCCCHHHHHHH
Q 003449 535 ARGGMWEQSEKIFAEMKG-------GRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSG------I-IEPHAVLLKTL 600 (819)
Q Consensus 535 ~~~g~~~~A~~~~~~m~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 600 (819)
...|++++|+.+|++..+ ...+....++..+...|...|++++|+..+++++.. . .+.....+..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345666666666666543 222234567888899999999999999999998764 1 13346678889
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHC-----CC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------CCCC-CHHH
Q 003449 601 ILVYSKSDLLMDTERAFLELKKK-----GF--SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS------GFTP-SLTT 666 (819)
Q Consensus 601 ~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p-~~~~ 666 (819)
+.++...|++++|...+++..+. +. +....++..+...|...|++++|.+.++++.+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998754 11 123567888999999999999999999998865 1122 3456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCC-
Q 003449 667 YNTLMYMYSRSENFARAEDVLREILAK-------GIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRD----SG-LVP- 732 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g-~~p- 732 (819)
+..+..+|...|++++|..+++++++. ...+. ...|..+...+...+....+.. +..+.. .+ ..|
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHH
Confidence 888999999999999999999998853 11222 3344444444444333332222 222211 11 112
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 733 DVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 733 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
...++..++..|...|++++|..+++++++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234788899999999999999999999886
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.06 E-value=5.4e-08 Score=94.43 Aligned_cols=184 Identities=10% Similarity=-0.019 Sum_probs=116.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 003449 578 MLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGF-SPDIPTLNAMISIYGRRQMVAKTNEILHFMN 656 (819)
Q Consensus 578 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 656 (819)
++..+++.+..+ .++...+..++.++...|++++|++++.+.++.+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 33344445666677777777777777777665543 1255667777778888888888888888887
Q ss_pred hCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003449 657 DSGFTP-----SLTTYNTLMYM--YSRSE--NFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 657 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 727 (819)
+. .| +..+...++.+ ....| ++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 45 24444445444 33334 788888888887664 34433333444477888888888888886654
Q ss_pred CC-----C---CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003449 728 SG-----L---VP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQN 770 (819)
Q Consensus 728 ~g-----~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 770 (819)
.. - .| |..++.+++......|+ +|.++++++.+ ..|+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCCh
Confidence 20 0 13 44566566666666776 78888888887 456433
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.04 E-value=9.1e-09 Score=100.87 Aligned_cols=189 Identities=7% Similarity=-0.020 Sum_probs=104.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC--CCCHHHHHHH
Q 003449 596 LLKTLILVYSKSDLLMDTERAFLELKKKGFSPD---IPTLNAMISIYGRRQMVAKTNEILHFMNDSGF--TPSLTTYNTL 670 (819)
Q Consensus 596 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~p~~~~~~~l 670 (819)
.+...+..+...|++++|...|+++.+.... + ...+..+..+|.+.|++++|+..|++..+..- +.....+..+
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 3333444444444444444444444443211 1 33444444445555555555555555444310 0112234444
Q ss_pred HHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHH-----------------HHHHHHHHHhcCCHHHHHHHHHHH
Q 003449 671 MYMYSR--------SENFARAEDVLREILAKGIKPDIIS-----------------YNTVIFAYCRNGRMKEASRIFSEM 725 (819)
Q Consensus 671 ~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~-----------------~~~l~~~~~~~g~~~~A~~~~~~~ 725 (819)
..++.. .|++++|+..|+++++.... +... +..++..|.+.|++++|+..|+++
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 444444 55555555555555543111 1111 356788899999999999999999
Q ss_pred HHCCCCC--CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCcHHHH
Q 003449 726 RDSGLVP--DVITYNTFVASYAAD----------SLFVEALDVVRYMIKQGCKPNQ----NTYNSIVDGYCKLNQRYEA 788 (819)
Q Consensus 726 ~~~g~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A 788 (819)
++..... ....+..++.+|... |++++|+..++++++. .|+. .....+...+.+.|+++++
T Consensus 175 l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 175 FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 8842221 234778888888866 8899999999999984 4643 3444555555555555443
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=3.1e-09 Score=119.40 Aligned_cols=173 Identities=8% Similarity=-0.069 Sum_probs=110.2
Q ss_pred hcCCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 003449 605 SKSDLLMDTERAFLELK--------KKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR 676 (819)
Q Consensus 605 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 676 (819)
...|++++|.+.+++.. +.. +.+...+..+...+...|++++|++.++++.+.. +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 34455555555555554 221 2245566666777777777777777777776653 4456667777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003449 677 SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDV 756 (819)
Q Consensus 677 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 756 (819)
.|++++|++.|+++++... -+...|..+..+|.+.|++++ ++.|+++.+.+.. +...|..++.++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777776531 246667777777777777777 7777777764221 445677777777777777777777
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHhcCc
Q 003449 757 VRYMIKQGCKPN-QNTYNSIVDGYCKLNQ 784 (819)
Q Consensus 757 ~~~~~~~g~~p~-~~~~~~l~~~~~~~g~ 784 (819)
++++++ +.|+ ...+..++.++...|+
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 777776 4563 5566667776655443
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.02 E-value=8.3e-09 Score=96.94 Aligned_cols=138 Identities=9% Similarity=0.005 Sum_probs=105.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003449 634 AMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG 713 (819)
Q Consensus 634 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 713 (819)
.+...|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|+..|+++++.. +.+...|..+..+|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 38888999999999999999999864 5577889999999999999999999999999864 235888888888887665
Q ss_pred C--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003449 714 R--MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 777 (819)
Q Consensus 714 ~--~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 777 (819)
+ .+.+...++.... ..|....+...+.++...|++++|+..++++++ +.|+......+..
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 4 4455666665532 233333555667778889999999999999998 6788665544443
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.02 E-value=1.1e-09 Score=96.63 Aligned_cols=144 Identities=9% Similarity=-0.013 Sum_probs=111.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003449 635 MISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR 714 (819)
Q Consensus 635 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 714 (819)
|...+...|++++|++.++...... +.+...+..+...|.+.|++++|++.|+++++.. +-+...|..+..+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 3445566788889988888877642 2233446678889999999999999999999864 2368899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCC-CHHHHHHHHHHHHhcCc
Q 003449 715 MKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDV-VRYMIKQGCKP-NQNTYNSIVDGYCKLNQ 784 (819)
Q Consensus 715 ~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 784 (819)
+++|+..|+++++. .| +..++..++..|...|++++|.+. ++++++ +.| ++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 99999999999984 44 567888999999999999877665 688888 567 67888888888777775
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.01 E-value=8.3e-08 Score=94.41 Aligned_cols=222 Identities=10% Similarity=0.054 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CChH
Q 003449 576 DQMLALSEEIYSGIIEPHAVLLKTLILVYSKSD--LLMDTERAFLELKKKGFSPDIPTLNAMISIY----GRR---QMVA 646 (819)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 646 (819)
++|+.++++++..+ +.+..+++.-..++...+ ++++++..++.++...+. +..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45555555555543 333444444455555555 666666666666655322 344444433333 333 6788
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HHHH
Q 003449 647 KTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFA--RAEDVLREILAKGIKPDIISYNTVIFAYCRNGR------MKEA 718 (819)
Q Consensus 647 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A 718 (819)
++++.++.+.+.. +-+..+|+.-..++.+.|.++ +++++++++++.+.. |...|+.-...+...|+ ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 8888888888764 567777887777777788777 888888888876533 67777777766766666 8888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 003449 719 SRIFSEMRDSGLVPDVITYNTFVASYAADSLFVE-ALDVVRYMIKQG-CKP-NQNTYNSIVDGYCKLNQRYEAITFVNNL 795 (819)
Q Consensus 719 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 795 (819)
++.+++++..... |...|+.+...+.+.|+..+ +..+.+++.+.+ ..| ++..+..++++|.+.|+.++|++.++++
T Consensus 206 l~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 8888888875433 66788888888888777444 555666665432 123 6778888888888888899999999988
Q ss_pred hh-cCCCC
Q 003449 796 SK-LDPHV 802 (819)
Q Consensus 796 ~~-~~p~~ 802 (819)
.+ .+|..
T Consensus 285 ~~~~Dpir 292 (306)
T 3dra_A 285 KSKYNPIR 292 (306)
T ss_dssp HHTTCGGG
T ss_pred HhccChHH
Confidence 86 67765
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.00 E-value=5.8e-09 Score=88.51 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=91.6
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHH
Q 003449 695 IKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTY 772 (819)
Q Consensus 695 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~ 772 (819)
+.|+ ...+...+..|.+.|++++|++.|++.++... .+...|..++.+|...|++++|+..++++++. .| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHH
Confidence 3444 45677788889999999999999999888532 25678889999999999999999999999984 56 67889
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHH
Q 003449 773 NSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 773 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
..++.+|...|++++|++.++++++++|++....
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~ 118 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAR 118 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 9999999999999999999999999999986543
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.00 E-value=2.5e-09 Score=120.16 Aligned_cols=163 Identities=12% Similarity=0.009 Sum_probs=142.7
Q ss_pred HhcCChHHHHHHHHHHh--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003449 640 GRRQMVAKTNEILHFMN--------DSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR 711 (819)
Q Consensus 640 ~~~~~~~~A~~~~~~~~--------~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 711 (819)
...|++++|++.+++.. +.. +.+...+..+..+|...|++++|++.|+++++.+ +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999998 432 4566788899999999999999999999999863 2368899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHH
Q 003449 712 NGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAI 789 (819)
Q Consensus 712 ~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 789 (819)
.|++++|.+.|+++++. .| +...+..++.++...|++++ +..++++++. .| +...|..++.+|.+.|++++|+
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999984 44 56788999999999999999 9999999984 56 7889999999999999999999
Q ss_pred HHHHHhhhcCCCCCHHHHHH
Q 003449 790 TFVNNLSKLDPHVTKELECK 809 (819)
Q Consensus 790 ~~~~~~~~~~p~~~~~~~~~ 809 (819)
..++++++++|++....++.
T Consensus 555 ~~~~~al~l~P~~~~a~~~~ 574 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTS 574 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHH
T ss_pred HHHHhhcccCcccHHHHHHH
Confidence 99999999999886665443
No 103
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.00 E-value=5.1e-07 Score=96.44 Aligned_cols=378 Identities=7% Similarity=-0.054 Sum_probs=213.9
Q ss_pred HcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHH
Q 003449 361 RDG-LLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGN-FVEM 438 (819)
Q Consensus 361 ~~g-~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 438 (819)
+.| +++.|..+|+.+.+. -|. |+.+.+..+|+..+.. .|+...|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 367777777777653 122 8889999999988874 4688888888877766653 3556
Q ss_pred HHHHHHHhhC-CC-CCCHHHHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHH
Q 003449 439 MKVFDEINKC-NC-KPDIVTWNTLLAVFG----QNGMDSEVSGVFKEMKRAGFIPERD-TFNTLISAYSRCGSFDQAMSI 511 (819)
Q Consensus 439 ~~~~~~~~~~-~~-~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~ 511 (819)
..+|+..... |. ..+...|...+..+. .+|+.+.+..+|++.+..... +.. .|..... +........+..+
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~-~~~~lw~~Y~~-fE~~~~~~~~~~~ 145 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMG-SLSELWKDFEN-FELELNKITGKKI 145 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCT-THHHHHHHHHH-HHHHHCHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhh-hHHHHHHHHHH-HHHHhccccHHHH
Confidence 6777776543 32 346677877777654 345677788888888764221 211 2222211 1111112222222
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC--C-----HHHHHHHHHH
Q 003449 512 YKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGR--E-----IDQMLALSEE 584 (819)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~ 584 (819)
..+.. +.+..|..+++++...-...+...|...+.--...+ - .+.+..+|++
T Consensus 146 ~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~ 204 (493)
T 2uy1_A 146 VGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNY 204 (493)
T ss_dssp HHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHH
Confidence 22111 122333333333321100012334444443322210 0 3345667777
Q ss_pred HHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC---C--
Q 003449 585 IYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS---G-- 659 (819)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~-- 659 (819)
++... +....++...+..+...|+.+.|..+|++.... +.+...+.. |....+.++. ++.+.+. .
T Consensus 205 al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 205 ILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----
T ss_pred HHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhcc
Confidence 77643 455777777777777888888888888888876 323322222 2211111121 2222211 0
Q ss_pred ----CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCC
Q 003449 660 ----FTP---SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG-RMKEASRIFSEMRDSGLV 731 (819)
Q Consensus 660 ----~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~ 731 (819)
..+ ....|...+....+.++.+.|..+|+++ +. ...+...|...+..-...+ +.+.|..+|+...+.. .
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~ 351 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-P 351 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-T
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-C
Confidence 001 1244666677777788899999999988 32 1223444443333223333 6899999999988752 2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 003449 732 PDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 732 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
-+...+..++......|+.+.|..+++++. .....|...+..-...|+.+.+.++++++.+
T Consensus 352 ~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 352 DSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 234556667777778899999999999873 2467788888877888999999998888764
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=9.5e-09 Score=113.56 Aligned_cols=155 Identities=8% Similarity=-0.103 Sum_probs=78.4
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003449 643 QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIF 722 (819)
Q Consensus 643 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 722 (819)
|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++.++.. +.+...+..+..+|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44555555555555432 2344555555666666666666666666665542 123555555666666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc---CcHHHHHHHHHHhhhc
Q 003449 723 SEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKL---NQRYEAITFVNNLSKL 798 (819)
Q Consensus 723 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 798 (819)
++..+... .+...+..++.+|...|++++|+..++++++. .| +...+..++..+... |++++|...++++++.
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 66655321 13445556666666666666666666666553 33 455555666666666 6666666666666666
Q ss_pred CCCC
Q 003449 799 DPHV 802 (819)
Q Consensus 799 ~p~~ 802 (819)
+|..
T Consensus 158 ~p~~ 161 (568)
T 2vsy_A 158 GVGA 161 (568)
T ss_dssp TCCC
T ss_pred CCcc
Confidence 6554
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.99 E-value=2.5e-08 Score=95.03 Aligned_cols=188 Identities=7% Similarity=0.016 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH---HHHH
Q 003449 594 AVLLKTLILVYSKSDLLMDTERAFLELKKKGFS-PD-IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSL---TTYN 668 (819)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~---~~~~ 668 (819)
...+..++..+...|++++|...|+++.+.... +. ...+..++.+|.+.|++++|++.|+++.+.. +.+. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHH
Confidence 344555666677777777777777777764322 11 3456666777777777777777777776642 1111 1333
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003449 669 TLMYMYSR------------------SENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSG 729 (819)
Q Consensus 669 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 729 (819)
.+..++.. .|++++|+..|+++++. .|+ ...+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHH----
Confidence 44444433 34455555555555543 122 1111111000 0000000
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCH
Q 003449 730 LVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN----QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 730 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
......++..|...|++++|+..++++++. .|+ ...+..++.+|.+.|++++|++.++++....|...+
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 001235677899999999999999999984 453 257889999999999999999999999999887654
No 106
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.99 E-value=1e-06 Score=94.08 Aligned_cols=125 Identities=6% Similarity=0.023 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003449 630 PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE-NFARAEDVLREILAKGIKPDIISYNTVIFA 708 (819)
Q Consensus 630 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 708 (819)
..|...+..+.+.+..+.|..+|+.+ ... ..+...|...+..-...+ +.+.|..+|+..++.- .-+...+...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 44666667666778899999999999 321 234455543333333333 6999999999998752 2245667777888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 709 YCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 709 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
..+.|+.+.|..+|+++. -....|...+..-...|+.+.+..+++++.+
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 889999999999999972 2456777777777788999999998888874
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.98 E-value=5.8e-09 Score=104.90 Aligned_cols=224 Identities=10% Similarity=0.070 Sum_probs=145.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 003449 536 RGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYAN-GREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTE 614 (819)
Q Consensus 536 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 614 (819)
..|++++|.+++++..+.. + . .+.. .+++++|...|.++ +..|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~-~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-K-T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-C-C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-c-c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3567788888888776531 1 1 1233 57788888777665 45677889999999
Q ss_pred HHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--C-CCC--HHHHHHHHHHHHhcCCHHHHH
Q 003449 615 RAFLELKKKGFS-PD----IPTLNAMISIYGRRQMVAKTNEILHFMNDSG--F-TPS--LTTYNTLMYMYSRSENFARAE 684 (819)
Q Consensus 615 ~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-~p~--~~~~~~l~~~~~~~g~~~~A~ 684 (819)
..|.+..+.... .+ ..+++.+...|...|++++|+..+++..+.. . .+. ..++..+..+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 888887642100 01 3467777888888888888888888776431 0 111 2456777777877 8888888
Q ss_pred HHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHH
Q 003449 685 DVLREILAKGIKP-D----IISYNTVIFAYCRNGRMKEASRIFSEMRDS----GLVPD-VITYNTFVASYAADSLFVEAL 754 (819)
Q Consensus 685 ~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~ 754 (819)
..|++.++..... + ..++..+...|.+.|++++|+..|++..+. +..+. ...+..++.++...|++++|+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888887541111 1 456777788888888888888888887762 11111 125566667777778888888
Q ss_pred HHHHHHHHcCCCCC------HHHHHHHHHHHHhcCcHHHHHH
Q 003449 755 DVVRYMIKQGCKPN------QNTYNSIVDGYCKLNQRYEAIT 790 (819)
Q Consensus 755 ~~~~~~~~~g~~p~------~~~~~~l~~~~~~~g~~~~A~~ 790 (819)
..+++++ . .|+ ......++..+ ..|+.+.+..
T Consensus 216 ~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 8888887 3 332 12344455544 5677665555
No 108
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.97 E-value=2.8e-08 Score=93.91 Aligned_cols=90 Identities=12% Similarity=0.092 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003449 633 NAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN 712 (819)
Q Consensus 633 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 712 (819)
..+...+...|++++|.+.+++.. .++...+..++.+|...|++++|++.+++.++.. +.+...|..++.+|...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 334444445555555555554432 2344444555555555555555555555544432 12344444444555555
Q ss_pred CCHHHHHHHHHHHHH
Q 003449 713 GRMKEASRIFSEMRD 727 (819)
Q Consensus 713 g~~~~A~~~~~~~~~ 727 (819)
|++++|.+.|+++.+
T Consensus 85 ~~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 85 EKYDLAIKDLKEALI 99 (213)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 555555555555444
No 109
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.94 E-value=4.6e-08 Score=84.29 Aligned_cols=130 Identities=12% Similarity=0.142 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003449 631 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC 710 (819)
Q Consensus 631 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 710 (819)
.+..++..+...|++++|..+++++.+.. +.+...+..++..+...|++++|..+++++.+.+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45667777788888888888888887653 4466777788888888888888888888888753 335677888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003449 711 RNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 711 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
..|++++|.++++++.+.. ..+...+..++..+...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8899999999998888753 225667888888888999999999999888763
No 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.94 E-value=2.8e-08 Score=86.87 Aligned_cols=101 Identities=13% Similarity=0.078 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 003449 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIV 776 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 776 (819)
...+..+...+.+.|++++|...|+++++. .| +...|..++.+|...|++++|+..++++++ +.| ++..|..++
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHH
Confidence 567888889999999999999999999985 44 567889999999999999999999999998 456 688999999
Q ss_pred HHHHhcCcHHHHHHHHHHhhhcCCCCC
Q 003449 777 DGYCKLNQRYEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 777 ~~~~~~g~~~~A~~~~~~~~~~~p~~~ 803 (819)
.+|.+.|++++|+..+++++++.|+++
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999998774
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.93 E-value=6.4e-07 Score=88.07 Aligned_cols=231 Identities=10% Similarity=0.047 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----hcC---CCHH
Q 003449 541 EQSEKIFAEMKGGRCKPNELTYSSLLHAYANGR--EIDQMLALSEEIYSGIIEPHAVLLKTLILVY----SKS---DLLM 611 (819)
Q Consensus 541 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 611 (819)
++|+++++.++..+ +-+...|+.--..+...+ ++++++..++.++.... .+..++..-..++ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 56666666665542 233444555555555555 66666666666666542 2222332222222 333 6778
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC------HHHH
Q 003449 612 DTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVA--KTNEILHFMNDSGFTPSLTTYNTLMYMYSRSEN------FARA 683 (819)
Q Consensus 612 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A 683 (819)
++..+++.+.+.. +.+-.+|+.-...+.+.|.++ ++++.++++.+.. +-|...|+.........+. ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 8888888888764 337777777777777778777 8999999998865 5577778877777777776 8999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003449 684 EDVLREILAKGIKPDIISYNTVIFAYCRNGRM-KEASRIFSEMRDSG--LVPDVITYNTFVASYAADSLFVEALDVVRYM 760 (819)
Q Consensus 684 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 760 (819)
++.+++++...+ -|...|+.+...+.+.|+. +++..+.+++.+.+ -..+...+..++.+|.+.|+.++|+++++.+
T Consensus 206 l~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999998753 3788999998889888884 44556777766532 1236678899999999999999999999999
Q ss_pred HHcCCCC-CHHHHHHHHH
Q 003449 761 IKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 761 ~~~g~~p-~~~~~~~l~~ 777 (819)
.+. +.| ....|...+.
T Consensus 285 ~~~-~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 285 KSK-YNPIRSNFWDYQIS 301 (306)
T ss_dssp HHT-TCGGGHHHHHHHHH
T ss_pred Hhc-cChHHHHHHHHHHh
Confidence 864 456 5666665543
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.92 E-value=1.1e-07 Score=89.28 Aligned_cols=175 Identities=11% Similarity=-0.007 Sum_probs=118.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHH
Q 003449 578 MLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQ----MVAKTNEILH 653 (819)
Q Consensus 578 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~ 653 (819)
|+..|++..+. .+...+..+...|...+++++|...|++..+.| +...+..|...|.. + ++++|.+.|+
T Consensus 5 A~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 44455555543 245555556666666666777777776666654 55666666666666 5 7777888777
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 003449 654 FMNDSGFTPSLTTYNTLMYMYSR----SENFARAEDVLREILAKGIK-PDIISYNTVIFAYCR----NGRMKEASRIFSE 724 (819)
Q Consensus 654 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 724 (819)
+..+.| +...+..+...|.. .+++++|+++|++..+.+.. .+...+..|...|.. .+++++|..+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 777654 55666677777766 67888888888888775421 026677777777777 7778888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHcC
Q 003449 725 MRDSGLVPDVITYNTFVASYAAD-S-----LFVEALDVVRYMIKQG 764 (819)
Q Consensus 725 ~~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~g 764 (819)
..+. ..+...+..++..|... | ++++|+.+++++.+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8774 23445677777777653 3 7888888888888765
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.92 E-value=1.3e-08 Score=92.79 Aligned_cols=161 Identities=11% Similarity=0.033 Sum_probs=107.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 003449 632 LNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFA-YC 710 (819)
Q Consensus 632 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~ 710 (819)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|+..++++.... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3445556667777777777777766542 3455667777777777788888887777776542 243333322211 12
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHH
Q 003449 711 RNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEA 788 (819)
Q Consensus 711 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A 788 (819)
..+...+|...+++..+. .| +...+..++.++...|++++|+..++++++....+ +...+..++.++...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 223334567778887773 34 46677888888888888888888888888743222 245777888888888888888
Q ss_pred HHHHHHhhh
Q 003449 789 ITFVNNLSK 797 (819)
Q Consensus 789 ~~~~~~~~~ 797 (819)
...+++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887654
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.91 E-value=2.6e-08 Score=98.82 Aligned_cols=164 Identities=9% Similarity=-0.072 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HH
Q 003449 628 DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNT-VI 706 (819)
Q Consensus 628 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~ 706 (819)
+...+..+...+.+.|++++|...+++..+.. +.+...+..+..++...|++++|...++++... .|+...... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 45566777778888888888888888888763 456677888888888899999999988888764 345433322 23
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcC
Q 003449 707 FAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN---QNTYNSIVDGYCKLN 783 (819)
Q Consensus 707 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g 783 (819)
..+...++.++|...+++..+... .+...+..++..+...|++++|+..++++++. .|+ ...+..++..+...|
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHHcC
Confidence 346677788888888888887432 25668888888899999999999999999884 442 667888899999999
Q ss_pred cHHHHHHHHHHhhh
Q 003449 784 QRYEAITFVNNLSK 797 (819)
Q Consensus 784 ~~~~A~~~~~~~~~ 797 (819)
+.++|...+++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999888888764
No 115
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.89 E-value=2.7e-07 Score=92.02 Aligned_cols=168 Identities=12% Similarity=0.062 Sum_probs=124.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CC--H
Q 003449 631 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSL------TTYNTLMYMYSRSENFARAEDVLREILAKGIK---PD--I 699 (819)
Q Consensus 631 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p~--~ 699 (819)
.+...+..+...|++++|.+.++...+.. +... ..+..+...+...|++++|+..++++.+.... +. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455667788889999998888777653 1222 12344666678889999999999998853211 11 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCC-C
Q 003449 700 ISYNTVIFAYCRNGRMKEASRIFSEMRDS-GLVPD-----VITYNTFVASYAADSLFVEALDVVRYMIKQG----CKP-N 768 (819)
Q Consensus 700 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~p-~ 768 (819)
.+|+.++..|...|++++|...++++.+. ...|+ ..++..++.+|...|++++|+.+++++++.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 58888999999999999999999998731 01122 2578899999999999999999999987631 111 1
Q ss_pred HHHHHHHHHHHHhcCcHHHH-HHHHHHhhhcC
Q 003449 769 QNTYNSIVDGYCKLNQRYEA-ITFVNNLSKLD 799 (819)
Q Consensus 769 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~ 799 (819)
..+|..++.+|.+.|++++| ...++++.+..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 67888999999999999999 78788877553
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.85 E-value=6.2e-07 Score=89.38 Aligned_cols=165 Identities=13% Similarity=0.070 Sum_probs=125.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHH
Q 003449 634 AMISIYGRRQMVAKTNEILHFMNDSGF-TPSL----TTYNTLMYMYSRSENFARAEDVLREILAKGIK-PD----IISYN 703 (819)
Q Consensus 634 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~ 703 (819)
..+..+...|++++|.+++++..+... .++. ..+..+...+...|++++|+..++++++.... .+ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 345667888999999999999887421 1221 12345667777888999999999999974222 22 34688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHH
Q 003449 704 TVIFAYCRNGRMKEASRIFSEMRDS-----GLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQ----GCKPN-QNTY 772 (819)
Q Consensus 704 ~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~ 772 (819)
.++.+|...|++++|...++++.+. +..+.. .++..++..|...|++++|+.+++++++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999999999851 111112 37889999999999999999999998853 21222 6789
Q ss_pred HHHHHHHHhcCc-HHHHHHHHHHhhhc
Q 003449 773 NSIVDGYCKLNQ-RYEAITFVNNLSKL 798 (819)
Q Consensus 773 ~~l~~~~~~~g~-~~~A~~~~~~~~~~ 798 (819)
..++.+|.+.|+ +++|.+.+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999994 69999999998865
No 117
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.84 E-value=1.2e-07 Score=90.73 Aligned_cols=197 Identities=13% Similarity=0.022 Sum_probs=143.6
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHhh------------CCCC-----
Q 003449 606 KSDLLMDTERAFLELKKKGFSPDIPTLNAM-------ISIYGRRQMVAKTNEILHFMND------------SGFT----- 661 (819)
Q Consensus 606 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~------------~~~~----- 661 (819)
..++...|.+.|.++....+. ....|..+ ...+.+.++..+++..+..... .|+-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 468888888888888876422 45667666 4555555555555555555443 1110
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----
Q 003449 662 ---PSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV---- 734 (819)
Q Consensus 662 ---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---- 734 (819)
.-......+...+...|++++|.++|+.+...+ |+......+...+.+.|++++|+..|+.... .|+.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~---~~d~~~~~ 171 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK---WPDKFLAG 171 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG---CSCHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc---cCCcccHH
Confidence 002234456777889999999999999887643 5443667777889999999999999986654 2233
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHHHHH
Q 003449 735 ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN--QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKL 810 (819)
Q Consensus 735 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l 810 (819)
..+..++.++...|++++|+..+++.......|. ...+...+.++.+.|+.++|...|+++...+|+ ......|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL 247 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHH
Confidence 3788899999999999999999999986433253 457888999999999999999999999999998 4444444
No 118
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.83 E-value=9.5e-09 Score=90.16 Aligned_cols=114 Identities=11% Similarity=0.023 Sum_probs=88.4
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003449 686 VLREILAKGIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQG 764 (819)
Q Consensus 686 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 764 (819)
.+++++.. .| +...+..+...+...|++++|...|+++.+... .+...|..++.++...|++++|+..++++++.
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l- 84 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM- 84 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 44555443 33 356677778888888999999998888887432 25667888888888899999999999998874
Q ss_pred CCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCH
Q 003449 765 CKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 765 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
.| +...+..++.+|...|++++|+..++++++..|+++.
T Consensus 85 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 85 -DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp -STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred -CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 45 6788888888899999999999999999888887543
No 119
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.83 E-value=5.3e-08 Score=97.85 Aligned_cols=224 Identities=10% Similarity=0.060 Sum_probs=152.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003449 501 RCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR-GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQML 579 (819)
Q Consensus 501 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 579 (819)
..|++++|.+++++..+.... .+.+ .+++++|...|.+. ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 357788888888877653110 1222 57888888887765 34677889999999
Q ss_pred HHHHHHHhCCC---C--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhcCChHHHH
Q 003449 580 ALSEEIYSGII---E--PHAVLLKTLILVYSKSDLLMDTERAFLELKKKG--F-SPD--IPTLNAMISIYGRRQMVAKTN 649 (819)
Q Consensus 580 ~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~--~~~~~~l~~~~~~~~~~~~A~ 649 (819)
..+.+...... . .....+..++.+|...|++++|...|++..+.- . .+. ..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 88888765311 1 114567788888999999999999998876531 1 111 3467778888888 9999999
Q ss_pred HHHHHHhhCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 003449 650 EILHFMNDSGFTP-S----LTTYNTLMYMYSRSENFARAEDVLREILAK----GIKPD-IISYNTVIFAYCRNGRMKEAS 719 (819)
Q Consensus 650 ~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~ 719 (819)
+.+++..+..... + ..++..+...|.+.|++++|+..|+++++. +..+. ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9998887541111 1 356778888899999999999999988753 11111 235666677777889999999
Q ss_pred HHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChHHHHH
Q 003449 720 RIFSEMRDSGLVPDV------ITYNTFVASYAADSLFVEALD 755 (819)
Q Consensus 720 ~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~ 755 (819)
..|++.. . .|+. .....++.++ ..|+.+.+..
T Consensus 216 ~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999987 4 3321 1233444444 5677665555
No 120
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.80 E-value=3.3e-07 Score=87.18 Aligned_cols=185 Identities=11% Similarity=-0.032 Sum_probs=132.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC-H-HHHH
Q 003449 558 NELTYSSLLHAYANGREIDQMLALSEEIYSGIIEP--HAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPD-I-PTLN 633 (819)
Q Consensus 558 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~ 633 (819)
+...+..+...+...|++++|+..+++++...... ....+..++.++.+.|++++|...|+++.+..+... . .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44556677778999999999999999999854322 246788899999999999999999999998643322 1 2455
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003449 634 AMISIYGR------------------RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGI 695 (819)
Q Consensus 634 ~l~~~~~~------------------~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 695 (819)
.+..++.. .|++++|...|+++.+.. +-+...+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----------HHHHHHH-----
Confidence 55555543 578999999999999863 2233333221111 0111111
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003449 696 KPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV----ITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 696 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
......++..|.+.|++++|+..|+++++. .|+. ..+..++.++.+.|++++|++.++.+...
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 112235667888999999999999999984 3432 46888999999999999999999998874
No 121
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.79 E-value=6.2e-08 Score=88.14 Aligned_cols=161 Identities=11% Similarity=-0.021 Sum_probs=116.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHh
Q 003449 598 KTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYM-YSR 676 (819)
Q Consensus 598 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~ 676 (819)
...+..+...|++++|...|++..+.. +.+...+..+...+...|++++|...++.+.... |+...+..+... +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 345566677788888888887766543 2366778888888888888888888888877653 354443332222 122
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 003449 677 SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALD 755 (819)
Q Consensus 677 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~ 755 (819)
.++..+|+..+++.++.. +.+...+..+..++...|++++|...|+++.+....+ +...+..++.++...|+.++|+.
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 223345788888888753 2257888889999999999999999999998853322 35578888999999999999999
Q ss_pred HHHHHHH
Q 003449 756 VVRYMIK 762 (819)
Q Consensus 756 ~~~~~~~ 762 (819)
.+++.+.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 122
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.79 E-value=1.3e-07 Score=93.87 Aligned_cols=168 Identities=11% Similarity=-0.025 Sum_probs=126.7
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH-H
Q 003449 591 EPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYN-T 669 (819)
Q Consensus 591 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-~ 669 (819)
+.+...+..++..+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|...++++... .|+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3445556667777788888888888888887764 236777888888888999999999998888765 35554332 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 003449 670 LMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADS 748 (819)
Q Consensus 670 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g 748 (819)
....+...++.++|...+++.++.. +.+...+..+...|...|++++|...|+++++..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 3334667778888888888888763 3367888888999999999999999999998843221 2557888888999999
Q ss_pred ChHHHHHHHHHHHH
Q 003449 749 LFVEALDVVRYMIK 762 (819)
Q Consensus 749 ~~~~A~~~~~~~~~ 762 (819)
+.++|...+++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999988888764
No 123
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.79 E-value=8e-08 Score=86.23 Aligned_cols=109 Identities=8% Similarity=-0.014 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003449 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 777 (819)
...+..+...+.+.|++++|++.|++.++... -+...|..++.+|...|++++|+..++++++. .| +...|..++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 45566666666777777777777777666321 14556667777777777777777777777763 34 5666777777
Q ss_pred HHHhcCcHHHHHHHHHHhhhcCCCCCHHHHHHH
Q 003449 778 GYCKLNQRYEAITFVNNLSKLDPHVTKELECKL 810 (819)
Q Consensus 778 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l 810 (819)
+|...|++++|+..++++++++|++....+..-
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 777777777777777777777777666544443
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.78 E-value=1.7e-07 Score=79.39 Aligned_cols=110 Identities=11% Similarity=0.062 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003449 665 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASY 744 (819)
Q Consensus 665 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 744 (819)
..+...+..|.+.|++++|++.|+++++.. +.+...|..+..+|.+.|++++|+..+++.++... .+...|..++.++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHH
Confidence 456778888999999999999999998764 33688899999999999999999999999988432 2566888999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 003449 745 AADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDG 778 (819)
Q Consensus 745 ~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~ 778 (819)
...|++++|+..++++++ +.| +...+..+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~--l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ--VDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--HCcCCHHHHHHHHHh
Confidence 999999999999999998 567 56666666554
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.76 E-value=4.8e-07 Score=85.24 Aligned_cols=141 Identities=13% Similarity=0.058 Sum_probs=91.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003449 667 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA 746 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 746 (819)
+..+...+...|++++|+..|++++ .|+...|..++.+|...|++++|.+.+++..+.. ..+...+..++.++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3445556667777777777776653 3466677777777777777777777777776642 2244566677777777
Q ss_pred cCChHHHHHHHHHHHHcCCCC-C----------------HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHHHH
Q 003449 747 DSLFVEALDVVRYMIKQGCKP-N----------------QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECK 809 (819)
Q Consensus 747 ~g~~~~A~~~~~~~~~~g~~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 809 (819)
.|++++|+..++++++. .| + ..++..++.+|.+.|++++|...++++.+..|++.......
T Consensus 84 ~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 161 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 161 (213)
T ss_dssp TTCHHHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHH
T ss_pred cccHHHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHH
Confidence 77777777777777663 22 2 25666777777777777777777777777777655444444
Q ss_pred HHHHH
Q 003449 810 LSDRI 814 (819)
Q Consensus 810 l~~~l 814 (819)
.+..+
T Consensus 162 a~~~~ 166 (213)
T 1hh8_A 162 AMECV 166 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 126
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.75 E-value=2.8e-07 Score=101.73 Aligned_cols=153 Identities=8% Similarity=-0.121 Sum_probs=110.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003449 608 DLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVL 687 (819)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 687 (819)
|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56677777777776653 2357778888888888899999999998888764 456778888888899999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcC
Q 003449 688 REILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD---SLFVEALDVVRYMIKQG 764 (819)
Q Consensus 688 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~g 764 (819)
+++++.. +.+...+..+..+|.+.|++++|.+.++++.+... .+...+..++.++... |++++|...++++++.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9888763 23577888888999999999999999999887532 2466788888888888 89999999999988753
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.75 E-value=8.6e-08 Score=87.33 Aligned_cols=126 Identities=7% Similarity=0.051 Sum_probs=95.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--H
Q 003449 675 SRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS-YAADSLF--V 751 (819)
Q Consensus 675 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~g~~--~ 751 (819)
...|++++|+..+++.++.. +.+...|..++..|...|++++|...|+++.+... .+...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 34677888888888887653 33577888888888888888888888888887422 255677778877 6788888 8
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCH
Q 003449 752 EALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 752 ~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
+|+..++++++. .| +...+..++..|...|++++|...++++++..|.+..
T Consensus 99 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 99 QTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 898888888874 45 5778888888888889999999999998888887754
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.71 E-value=4.6e-07 Score=81.30 Aligned_cols=130 Identities=17% Similarity=0.118 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003449 665 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASY 744 (819)
Q Consensus 665 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 744 (819)
..+..+...+...|++++|...|++.++.. +.+...+..++.++...|++++|...+++..+.. ..+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 346667777888888888888888888753 2357788888888888899999999998888753 22566788888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CHHHHHHH--HHHHHhcCcHHHHHHHHHHhhhc
Q 003449 745 AADSLFVEALDVVRYMIKQGCKP-NQNTYNSI--VDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 745 ~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
...|++++|+.+++++++. .| +...+..+ +..+.+.|++++|+..+++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999998874 44 55555443 44477889999999888876543
No 129
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.71 E-value=9.9e-06 Score=80.03 Aligned_cols=195 Identities=8% Similarity=0.040 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 003449 610 LMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQ--MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSEN-FARAEDV 686 (819)
Q Consensus 610 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~ 686 (819)
++++..+++.+.... +.+..+|+.-...+.+.+ .++++++.++.+.+.. +-+...|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 566777777777654 336777777666666666 4788888888888764 5677788888888888887 6888999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----
Q 003449 687 LREILAKGIKPDIISYNTVIFAYCRN--------------GRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD----- 747 (819)
Q Consensus 687 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~----- 747 (819)
++++++..+. |...|+.....+... +.++++++.+++.+..... |...|+.+-..+...
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccc
Confidence 9888876533 677777777666655 4578899999998884322 566777666666655
Q ss_pred ------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----HhcCcHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 003449 748 ------SLFVEALDVVRYMIKQGCKPNQNTYNSIVDGY-----CKLNQRYEAITFVNNLSKLDPHVTKELECKLSD 812 (819)
Q Consensus 748 ------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~ 812 (819)
+.++++++.++++++ ..||. .|..+..++ ...|..++...++.++.+++|-. ...|..+-.
T Consensus 246 ~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r-~~~y~d~~~ 317 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQE--LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR-AAYLDDLRS 317 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG-HHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch-hhHHHHHHH
Confidence 458899999999998 56754 344333322 25688889999999999999976 445555443
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.68 E-value=7e-06 Score=81.63 Aligned_cols=163 Identities=11% Similarity=-0.001 Sum_probs=118.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-CC----HHHHHH
Q 003449 600 LILVYSKSDLLMDTERAFLELKKKGF-SPDI----PTLNAMISIYGRRQMVAKTNEILHFMNDSGFT-PS----LTTYNT 669 (819)
Q Consensus 600 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~ 669 (819)
.+..+...|++++|...+++..+... .++. ..+..+...+...+++++|++.++++.+.... .+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566777888888888877765321 1121 12334666677788899999999988874222 22 236888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 003449 670 LMYMYSRSENFARAEDVLREILA----K-GIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDS----GLVPD-VITYN 738 (819)
Q Consensus 670 l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~ 738 (819)
++.+|...|++++|+.+++++++ . +..+. ..++..++..|.+.|++++|.+.+++.++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999883 1 11112 457888999999999999999999988762 22222 45888
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHH
Q 003449 739 TFVASYAADSL-FVEALDVVRYMIK 762 (819)
Q Consensus 739 ~l~~~~~~~g~-~~~A~~~~~~~~~ 762 (819)
.++.++...|+ +++|...++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999999875
No 131
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.67 E-value=1.9e-07 Score=78.47 Aligned_cols=99 Identities=9% Similarity=0.022 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 003449 701 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDG 778 (819)
Q Consensus 701 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~ 778 (819)
.+..++..+.+.|++++|+..|+++++. .| +...|..++.++...|++++|+..++++++ +.| +...+..++.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 4556778888999999999999999984 34 667888999999999999999999999998 456 67889999999
Q ss_pred HHhcCcHHHHHHHHHHhhhcCCCCC
Q 003449 779 YCKLNQRYEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 779 ~~~~g~~~~A~~~~~~~~~~~p~~~ 803 (819)
|...|++++|+..++++++.+|...
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC------
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999998764
No 132
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.67 E-value=5.4e-06 Score=82.24 Aligned_cols=221 Identities=14% Similarity=0.080 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-ChHHHHHHH
Q 003449 576 DQMLALSEEIYSGIIEPHAVLLKTLILVYSKSD-LLMDTERAFLELKKKGFSPDIPTLNAMISIYGRR-Q-MVAKTNEIL 652 (819)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~~~ 652 (819)
++|+.++++++..+ +.+..+++.-..++...| .+++++..++.++.... .+..+|+.-...+.+. + +++++++++
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 34455555544433 233333444444444444 36666666666665432 2555555555555444 4 667777777
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------HHH
Q 003449 653 HFMNDSGFTPSLTTYNTLMYMYSRSENFA--------RAEDVLREILAKGIKPDIISYNTVIFAYCRNGR-------MKE 717 (819)
Q Consensus 653 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~ 717 (819)
+.+.+.. +-+..+|+.-..++.+.|.++ ++++.++++++.... |...|+.....+.+.++ +++
T Consensus 149 ~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHH
Confidence 7777653 446666666665555555554 777777777775432 66777777766666665 677
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh--------------------HHHHHHHHHHHHcC----C-CCCHHHH
Q 003449 718 ASRIFSEMRDSGLVPDVITYNTFVASYAADSLF--------------------VEALDVVRYMIKQG----C-KPNQNTY 772 (819)
Q Consensus 718 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~g----~-~p~~~~~ 772 (819)
+++.+++++..... |...|+.+...+.+.|+- .+..+....+...+ . .+++..+
T Consensus 227 ELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 227 ELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 77777777764322 555666666666665543 22223333332211 1 2356777
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhh-hcCCC
Q 003449 773 NSIVDGYCKLNQRYEAITFVNNLS-KLDPH 801 (819)
Q Consensus 773 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~ 801 (819)
.-+++.|...|+.++|.+.++.+. +.+|-
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence 788888888888888888888876 44554
No 133
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.66 E-value=1.5e-07 Score=81.95 Aligned_cols=103 Identities=14% Similarity=0.055 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003449 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 777 (819)
...+..+...+.+.|++++|...|+++.+... .+...|..++.++...|++++|+..++++++. .| +...+..++.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHH
Confidence 45566667777888888888888888877432 25667778888888888888888888888874 45 6677788888
Q ss_pred HHHhcCcHHHHHHHHHHhhhcCCCCCH
Q 003449 778 GYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 778 ~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
+|...|++++|+..++++++..|+++.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 888888888888888888888776643
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.66 E-value=4.2e-07 Score=77.15 Aligned_cols=98 Identities=16% Similarity=0.131 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003449 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 777 (819)
...|..++..+.+.|++++|+..|++.++.. ..+...|..++.++...|++++|+..++++++. .| +...|..++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 4456677778888888888888888888742 225667888888888888888888888888874 45 6778888888
Q ss_pred HHHhcCcHHHHHHHHHHhhhcC
Q 003449 778 GYCKLNQRYEAITFVNNLSKLD 799 (819)
Q Consensus 778 ~~~~~g~~~~A~~~~~~~~~~~ 799 (819)
++...|++++|+..++++++.+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 8888899999999998888888
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.66 E-value=2.3e-07 Score=86.70 Aligned_cols=160 Identities=12% Similarity=0.026 Sum_probs=106.7
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCH
Q 003449 641 RRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK----GIKP-DIISYNTVIFAYCRNGRM 715 (819)
Q Consensus 641 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~ 715 (819)
..|++++|.+.++.+... ......++..+...+...|++++|...+++.++. +..+ ...++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 457777777755444332 1234456777777888888888888888877641 1111 255677778888888888
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCc
Q 003449 716 KEASRIFSEMRDS----GLVP--DVITYNTFVASYAADSLFVEALDVVRYMIKQGCK-PN----QNTYNSIVDGYCKLNQ 784 (819)
Q Consensus 716 ~~A~~~~~~~~~~----g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~~g~ 784 (819)
++|.+.+++..+. +-.+ ....+..++..+...|++++|+..++++++..-. .+ ..++..++..+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888888887763 1111 1235777888888888888888888887742101 12 2346788888888999
Q ss_pred HHHHHHHHHHhhhcCCC
Q 003449 785 RYEAITFVNNLSKLDPH 801 (819)
Q Consensus 785 ~~~A~~~~~~~~~~~p~ 801 (819)
+++|...++++.+....
T Consensus 163 ~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 163 LLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999988888776443
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.64 E-value=3.7e-06 Score=83.68 Aligned_cols=164 Identities=10% Similarity=-0.029 Sum_probs=117.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC---CCC--HHHHH
Q 003449 599 TLILVYSKSDLLMDTERAFLELKKKGFSPD-----IPTLNAMISIYGRRQMVAKTNEILHFMNDSGF---TPS--LTTYN 668 (819)
Q Consensus 599 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~p~--~~~~~ 668 (819)
..+..+...|++++|...+.+..+...... ...+..+...+...|++++|++.+++..+... .+. ..+++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 345556667777777777776665422211 12234455667788899999999988875321 122 44788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH---HCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CHHHH
Q 003449 669 TLMYMYSRSENFARAEDVLREIL---AKGI-KP--DIISYNTVIFAYCRNGRMKEASRIFSEMRDSG----LVP-DVITY 737 (819)
Q Consensus 669 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~p-~~~~~ 737 (819)
.++..|...|++++|...++++. +... .+ ...++..++..|...|++++|.+.+++..+.. ... -..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 99999999999999999999987 3211 11 12588899999999999999999999987631 111 14678
Q ss_pred HHHHHHHHhcCChHHH-HHHHHHHHH
Q 003449 738 NTFVASYAADSLFVEA-LDVVRYMIK 762 (819)
Q Consensus 738 ~~l~~~~~~~g~~~~A-~~~~~~~~~ 762 (819)
..++.+|...|++++| ...++++++
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 8999999999999999 777888764
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.63 E-value=6.6e-07 Score=78.09 Aligned_cols=104 Identities=10% Similarity=0.045 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003449 663 SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVA 742 (819)
Q Consensus 663 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 742 (819)
+...+..+...+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|++.|+++.+.... +...|..++.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 34467778888889999999999999998763 236888888999999999999999999999884322 4668888999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003449 743 SYAADSLFVEALDVVRYMIKQGCKPNQN 770 (819)
Q Consensus 743 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 770 (819)
+|...|++++|+..++++++ +.|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 99999999999999999988 456654
No 138
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.63 E-value=6.5e-07 Score=90.90 Aligned_cols=131 Identities=9% Similarity=-0.004 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003449 664 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD--------------IISYNTVIFAYCRNGRMKEASRIFSEMRDSG 729 (819)
Q Consensus 664 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 729 (819)
...+..+...|.+.|++++|+..|+++++...... ...|..+..+|.+.|++++|+..++++++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34566677777777777777777777776432211 4788888888888899999999888888843
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHH-HHHHHHhhh
Q 003449 730 LVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEA-ITFVNNLSK 797 (819)
Q Consensus 730 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 797 (819)
. .+...|..++.+|...|++++|+..++++++. .| +..++..++.++.+.|++++| ...++++..
T Consensus 227 p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 S-NNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 25668888888888899999999999988884 56 677888888888888888888 456666654
No 139
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.63 E-value=5.1e-07 Score=77.98 Aligned_cols=101 Identities=11% Similarity=-0.004 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 003449 698 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIV 776 (819)
Q Consensus 698 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 776 (819)
+...+..++..+...|++++|...|++.++... .+...+..++.++...|++++|+..++++++. .| +...|..++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHHH
Confidence 466777777777777888888888777776422 24567777777788888888888888888774 34 567777888
Q ss_pred HHHHhcCcHHHHHHHHHHhhhcCCC
Q 003449 777 DGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 777 ~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
.+|...|++++|+..++++++..|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888888888888888888877776
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.62 E-value=2.6e-07 Score=91.25 Aligned_cols=196 Identities=8% Similarity=-0.065 Sum_probs=131.3
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003449 593 HAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMY 672 (819)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 672 (819)
+...+..++..+...|++++|...|++..+.. +.+...+..+...|.+.|++++|.+.+++..+.. +.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556677777888888888888888887763 2367888888999999999999999999988764 556778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003449 673 MYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFV 751 (819)
Q Consensus 673 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 751 (819)
+|...|++++|...|+++.+.+ |+ ...+...+....+ ..++... ..........+......+... ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRW-NSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 9999999999999999887642 21 1111111111111 1222222 222233344455544444332 368899
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc-CcHHHHHHHHHHhhhcCC
Q 003449 752 EALDVVRYMIKQGCKPN-QNTYNSIVDGYCKL-NQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 752 ~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p 800 (819)
+|++.++++++ ..|+ ......+...+.+. +.+++|.++|+++.+..+
T Consensus 153 ~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 153 RELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp HHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred HHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99999998887 4664 34444555555555 778899999998877543
No 141
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.61 E-value=3.1e-07 Score=77.94 Aligned_cols=100 Identities=13% Similarity=0.139 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------H
Q 003449 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN--------Q 769 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--------~ 769 (819)
...+..++..+.+.|++++|++.|++.++. .| +...|..++.+|...|++++|+..++++++. .|+ .
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a 83 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV--GRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh--CcccchhhHHHH
Confidence 345666777777788888888888877774 33 4556777788888888888888888887763 221 2
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCC
Q 003449 770 NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 770 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
.+|..++.++...|++++|++.++++++..|++
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 467777888888888888888888888877653
No 142
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.59 E-value=8.9e-07 Score=73.85 Aligned_cols=104 Identities=16% Similarity=0.091 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003449 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 777 (819)
...+..++..+...|++++|...+++..+.. ..+...+..++.++...|++++|+..++++++. .| +...+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 4566777778888888888888888887742 225667788888888888888888888888874 34 6778888888
Q ss_pred HHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 778 GYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 778 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
++...|++++|...++++.+.+|++...
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 108 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQL 108 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHH
Confidence 8888899999999999988888877443
No 143
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.59 E-value=2.1e-07 Score=80.05 Aligned_cols=103 Identities=13% Similarity=-0.002 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----
Q 003449 701 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD--------V-----ITYNTFVASYAADSLFVEALDVVRYMIKQ---- 763 (819)
Q Consensus 701 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--------~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 763 (819)
.+......+.+.|++++|+..|++.++. .|+ . ..|..++.++.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3445556666677777777777777662 333 2 28888999999999999999999999882
Q ss_pred -CCCC-CHHHH----HHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 764 -GCKP-NQNTY----NSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 764 -g~~p-~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
-+.| +...| ...+.++...|++++|+..|++++++.|++..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 0167 46778 899999999999999999999999999877443
No 144
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.59 E-value=1.8e-05 Score=78.46 Aligned_cols=231 Identities=6% Similarity=-0.031 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcC-C-CHHHHHHHH
Q 003449 541 EQSEKIFAEMKGGRCKPNELTYSSLLHAYANGR-EIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKS-D-LLMDTERAF 617 (819)
Q Consensus 541 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~ 617 (819)
++|++++++++..+ +-+..+|+.--..+...+ .+++++..++.++... +.+..++..-..++... + ++++++.++
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 34444444444432 222333333333333334 3555555555555433 23333333333333333 3 455555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-------HHH
Q 003449 618 LELKKKGFSPDIPTLNAMISIYGRRQMVA--------KTNEILHFMNDSGFTPSLTTYNTLMYMYSRSEN-------FAR 682 (819)
Q Consensus 618 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~ 682 (819)
+.+.+... .+..+|+.-...+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+. +++
T Consensus 149 ~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 55555432 24445544443433333333 7777777777754 4566677777777766665 678
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHCC-----CCCCHHHH
Q 003449 683 AEDVLREILAKGIKPDIISYNTVIFAYCRNGRM--------------------KEASRIFSEMRDSG-----LVPDVITY 737 (819)
Q Consensus 683 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~g-----~~p~~~~~ 737 (819)
+++.+++++.... -|...|+.+-..+.+.|+. .+..++..++...+ -.++...+
T Consensus 227 ELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 227 ELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 8888888887642 3677787777777666653 23333333333221 13566788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003449 738 NTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 738 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 777 (819)
..++..|...|+.++|.++++.+.+. ..| ....|...+.
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYWEFRRR 345 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHHHHHHH
Confidence 89999999999999999999998754 456 4555555443
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=8.8e-07 Score=75.86 Aligned_cols=103 Identities=16% Similarity=0.145 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003449 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 777 (819)
...+..++..+...|++++|.+.++++.+.. ..+...+..++.++...|++++|+..++++++. .| +...+..++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 4455555555555555555555555555431 113445555555555566666666666665553 23 4555555666
Q ss_pred HHHhcCcHHHHHHHHHHhhhcCCCCCH
Q 003449 778 GYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 778 ~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
++...|++++|+..++++.+.+|.+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 119 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKE 119 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchH
Confidence 666666666666666666666555543
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=6.7e-07 Score=76.60 Aligned_cols=120 Identities=11% Similarity=0.039 Sum_probs=102.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003449 661 TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTF 740 (819)
Q Consensus 661 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 740 (819)
+.+...+..+...+...|++++|...|+++++.. +.+...+..++.+|...|++++|.+.++++.+.. ..+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3456678899999999999999999999999863 3368889999999999999999999999999853 2256789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCc
Q 003449 741 VASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQ 784 (819)
Q Consensus 741 ~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 784 (819)
+.++...|++++|+..++++++. .| +...+..++.++.+.|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999984 45 56778888888877664
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.58 E-value=1.1e-06 Score=74.21 Aligned_cols=104 Identities=16% Similarity=0.270 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003449 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDG 778 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 778 (819)
...+..++..+...|++++|.++++++.+.. ..+...+..++..+...|++++|+.+++++.+.. ..+..++..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4455566666666666666666666666532 1244566666666677777777777777766632 2255666667777
Q ss_pred HHhcCcHHHHHHHHHHhhhcCCCCCH
Q 003449 779 YCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 779 ~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
|...|++++|...++++.+.+|.+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~ 112 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAE 112 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHH
Confidence 77777777777777777777666543
No 148
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.58 E-value=1.2e-06 Score=74.60 Aligned_cols=114 Identities=15% Similarity=0.110 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003449 667 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA 746 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 746 (819)
+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|.+.+++..+.. ..+...+..++.++..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 3444444444555555555555544431 1134444444444445555555555555544421 1123344444444555
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCc
Q 003449 747 DSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQ 784 (819)
Q Consensus 747 ~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 784 (819)
.|++++|+..++++++. .| +...+..++.++.+.|+
T Consensus 93 ~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp TTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhc
Confidence 55555555555554442 22 34444444444444443
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.58 E-value=2e-06 Score=72.55 Aligned_cols=116 Identities=13% Similarity=0.211 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003449 664 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 743 (819)
Q Consensus 664 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 743 (819)
...+..++..+...|++++|.+.++++.+.. +.+...+..++..+...|++++|..+++++.+.. ..+...+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4567777778888888888888888887653 2357777888888888888888888888887753 2356677888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC
Q 003449 744 YAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLN 783 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g 783 (819)
+...|++++|..+++++.+. .| +...+..++..+...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888874 44 5666667776665543
No 150
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.56 E-value=9.1e-07 Score=72.96 Aligned_cols=103 Identities=14% Similarity=0.085 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHH
Q 003449 698 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP---NQNTYNS 774 (819)
Q Consensus 698 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~ 774 (819)
+...+..++..+...|++++|...++++.+.. ..+...+..++.++...|++++|+..++++++. .| +..++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHH
Confidence 45667778888899999999999999988753 225678888999999999999999999999985 34 4788899
Q ss_pred HHHHHHhc-CcHHHHHHHHHHhhhcCCCCC
Q 003449 775 IVDGYCKL-NQRYEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 775 l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~ 803 (819)
++.++... |++++|.+.++++.+..|.++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999 999999999999999998764
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.56 E-value=1.8e-05 Score=78.22 Aligned_cols=155 Identities=12% Similarity=0.115 Sum_probs=128.4
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 003449 645 VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE--NFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR-MKEASRI 721 (819)
Q Consensus 645 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~ 721 (819)
+++++.+++.+.... +-+..+|+.-..++...+ ++++++++++++++.... |...|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 678899999988764 668888998888888888 489999999999987533 78888888888888898 6999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc----
Q 003449 722 FSEMRDSGLVPDVITYNTFVASYAAD--------------SLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKL---- 782 (819)
Q Consensus 722 ~~~~~~~g~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~---- 782 (819)
++++++..+. |..+|+.....+... +.++++++.+++++. ..| |...|+.+...+...
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCcc
Confidence 9999996544 777888777776655 458999999999998 457 888898777777665
Q ss_pred -------CcHHHHHHHHHHhhhcCCCCCH
Q 003449 783 -------NQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 783 -------g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
+.++++++.++++++..|++..
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~~w 273 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPENKW 273 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCcccch
Confidence 5689999999999999998844
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=1.3e-06 Score=76.47 Aligned_cols=104 Identities=11% Similarity=0.011 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHH
Q 003449 698 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD----VITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTY 772 (819)
Q Consensus 698 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~ 772 (819)
+...+..+...+...|++++|.+.|++..+ ..|+ ...+..++.++...|++++|+..++++++. .| +...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHH
Confidence 456677777777777888888888887776 3455 456777888888888888888888888774 44 66777
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 773 NSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 773 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
..++.+|...|++++|...++++++.+|++...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 135 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 888888888888888888888888888876443
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.55 E-value=9.7e-07 Score=74.81 Aligned_cols=108 Identities=10% Similarity=0.116 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHH
Q 003449 665 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG--LVPD----VITYN 738 (819)
Q Consensus 665 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p~----~~~~~ 738 (819)
..+..++..+.+.|++++|++.|+++++.. +.+...|..+..+|.+.|++++|++.+++.++.. ...+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 356678888888999999999999888753 2357788888888999999999999998887631 1111 13677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003449 739 TFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSI 775 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 775 (819)
.++.++...|++++|++.+++.++ ..||+.+...+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 888889999999999999999887 45777665444
No 154
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.53 E-value=3.2e-06 Score=75.64 Aligned_cols=130 Identities=12% Similarity=0.039 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003449 630 PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAY 709 (819)
Q Consensus 630 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 709 (819)
..+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|...+++.++.. +.+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 446667777888888888888888887753 4567788888888889999999999999888753 33577888888889
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHH
Q 003449 710 CRNGRMKEASRIFSEMRDSGLVPDVITYN--TFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 710 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
...|++++|...++++.+.... +...+. ..+..+...|++++|+..+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999998874322 344443 344447778889999988887654
No 155
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.52 E-value=3.1e-06 Score=81.01 Aligned_cols=140 Identities=11% Similarity=0.004 Sum_probs=106.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 003449 631 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD--IISYNTVIFA 708 (819)
Q Consensus 631 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~ 708 (819)
....++..+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 34556777888999999999998887653 554466666778899999999999998665531 121 3467788899
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003449 709 YCRNGRMKEASRIFSEMRDSGLVPD--VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSI 775 (819)
Q Consensus 709 ~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 775 (819)
+...|++++|+..|++.......|. .......+.++.+.|+.++|..+++++.+. .|+...+..|
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 9999999999999999885332254 346778888999999999999999999984 5665544444
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.52 E-value=2.3e-06 Score=79.70 Aligned_cols=156 Identities=10% Similarity=-0.007 Sum_probs=105.5
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCH
Q 003449 606 KSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS----GFTP-SLTTYNTLMYMYSRSENF 680 (819)
Q Consensus 606 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~ 680 (819)
..|++++|.+.++.+... .......+..+...+...|++++|...+++..+. +..+ ...++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644444321 1224556677777777788888888777776652 1111 234577788888899999
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCC
Q 003449 681 ARAEDVLREILAK----GIKP--DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL-VPDV----ITYNTFVASYAADSL 749 (819)
Q Consensus 681 ~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~----~~~~~l~~~~~~~g~ 749 (819)
++|...+++..+. +-.+ ....+..+...+...|++++|...+++..+..- ..+. .++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999998887743 2111 245677888889999999999999998875210 1122 246788889999999
Q ss_pred hHHHHHHHHHHHH
Q 003449 750 FVEALDVVRYMIK 762 (819)
Q Consensus 750 ~~~A~~~~~~~~~ 762 (819)
+++|...++++++
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
No 157
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.52 E-value=7.3e-07 Score=79.63 Aligned_cols=103 Identities=13% Similarity=0.033 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CC--------CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003449 701 SYNTVIFAYCRNGRMKEASRIFSEMRDS--------GL--------VP-DVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 701 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------g~--------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
.+...+..+.+.|++++|+..|++.++. .. .| +...|..++.+|...|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444445555555555555555555442 00 11 2347788888899999999999999999884
Q ss_pred CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 764 GCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 764 g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
.| +...|..++.+|...|++++|+..++++++++|++...
T Consensus 93 --~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 133 (162)
T 3rkv_A 93 --EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASV 133 (162)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred --CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHH
Confidence 56 67888899999999999999999999999999988633
No 158
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.51 E-value=5.2e-07 Score=78.94 Aligned_cols=110 Identities=11% Similarity=0.030 Sum_probs=86.4
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003449 651 ILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL 730 (819)
Q Consensus 651 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 730 (819)
.++++.... +.+...+..+...+...|++++|+..|++++... +.+...|..+..+|...|++++|+..|+++++...
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 344444432 2244567778888899999999999999988763 33688888899999999999999999999988432
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003449 731 VPDVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 731 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
.+...+..++.+|...|++++|+..++++++.
T Consensus 87 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 -XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp -TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 25578888999999999999999999999873
No 159
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.50 E-value=1.9e-06 Score=73.45 Aligned_cols=106 Identities=14% Similarity=0.179 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 003449 698 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIV 776 (819)
Q Consensus 698 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 776 (819)
+...+..++..+...|++++|...++++.+.. ..+...+..++.++...|++++|+..++++++. .| +...+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHH
Confidence 45678888899999999999999999998853 236778899999999999999999999999985 45 688999999
Q ss_pred HHHHhcCcHHHHHHHHHHhhhcCCCCCHHH
Q 003449 777 DGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 777 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
..+...|++++|...++++.+.+|++....
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 117 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYK 117 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHH
Confidence 999999999999999999999999875443
No 160
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.49 E-value=1.2e-06 Score=79.61 Aligned_cols=121 Identities=7% Similarity=0.097 Sum_probs=92.3
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 003449 640 GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFA-YCRNGRM--K 716 (819)
Q Consensus 640 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~ 716 (819)
...|++++|.+.++...+.. +.+...+..+..+|...|++++|...|+++++.. +.+...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34677888888888877653 4567788888888889999999999999888753 2357777788888 7788888 9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003449 717 EASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 717 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
+|...++++.+... .+...+..++.++...|++++|+..++++++.
T Consensus 99 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999999888532 24667888888899999999999999999884
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.47 E-value=2.7e-06 Score=72.08 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003449 664 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 743 (819)
Q Consensus 664 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 743 (819)
...+..+...+.+.|++++|+..|++.++.. +.+...|..++.+|.+.|++++|+..+++.++... .+...|..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 3456677788888899999999999888763 33678888888889999999999999999888432 246688888889
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 003449 744 YAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~~ 763 (819)
+...|++++|+..++++++.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999998873
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.46 E-value=1.3e-06 Score=86.24 Aligned_cols=166 Identities=6% Similarity=-0.081 Sum_probs=121.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003449 628 DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIF 707 (819)
Q Consensus 628 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 707 (819)
+...+..+...+.+.|++++|+..+++..+.. +.+...|..+..+|.+.|++++|+..++++++.. +.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45677888899999999999999999998864 4578889999999999999999999999999863 235888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHH
Q 003449 708 AYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRY 786 (819)
Q Consensus 708 ~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 786 (819)
+|...|++++|...|+++.+. .|+. ..+...++...+ ..++..+.+ ..+.-...+..+...+... ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALR---IAKKKRWNS-IEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHH---HHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHH---HHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 999999999999999998873 2211 011111121111 122222222 2222244466666666544 379999
Q ss_pred HHHHHHHHhhhcCCCCC
Q 003449 787 EAITFVNNLSKLDPHVT 803 (819)
Q Consensus 787 ~A~~~~~~~~~~~p~~~ 803 (819)
+|++.++++++.+|.+.
T Consensus 153 ~A~~~~~~al~~~p~~~ 169 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDG 169 (281)
T ss_dssp HHHTTTSGGGTTTSCHH
T ss_pred HHHHHHHhhhccccchh
Confidence 99999999999988763
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.46 E-value=2.9e-06 Score=78.66 Aligned_cols=131 Identities=14% Similarity=0.006 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003449 665 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPD----------------IISYNTVIFAYCRNGRMKEASRIFSEMRDS 728 (819)
Q Consensus 665 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 728 (819)
..+..+...+...|++++|+..|+++++.... + ...|..+..+|...|++++|+..++++++.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34556667777778888888888877764211 2 267778888888889999999988888874
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHH-HHHHHhhhcC
Q 003449 729 GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAI-TFVNNLSKLD 799 (819)
Q Consensus 729 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~ 799 (819)
. ..+...+..++.+|...|++++|+..++++++. .| +..++..+..++...|+.+++. ..++++...+
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 225667888888888899999999999988874 45 6777888888888888877777 5555555443
No 164
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.45 E-value=2.6e-07 Score=77.21 Aligned_cols=102 Identities=13% Similarity=-0.008 Sum_probs=71.6
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHH
Q 003449 711 RNGRMKEASRIFSEMRDSGL-VP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYE 787 (819)
Q Consensus 711 ~~g~~~~A~~~~~~~~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 787 (819)
..|++++|+..|++.++.+. .| +...+..++.+|...|++++|+..++++++. .| +..++..++.+|...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHH
Confidence 35778888888888877431 12 2346778888888888888888888888874 45 67788888888888888888
Q ss_pred HHHHHHHhhhcCCCCCHH-HHHHHHHHH
Q 003449 788 AITFVNNLSKLDPHVTKE-LECKLSDRI 814 (819)
Q Consensus 788 A~~~~~~~~~~~p~~~~~-~~~~l~~~l 814 (819)
|+..++++++..|+++.. .|...+..+
T Consensus 80 A~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 888888888888877554 344444433
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.45 E-value=1.9e-06 Score=73.33 Aligned_cols=101 Identities=18% Similarity=0.135 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-C---HHHHHH
Q 003449 702 YNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV---ITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-N---QNTYNS 774 (819)
Q Consensus 702 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~---~~~~~~ 774 (819)
+..++..+...|++++|.+.|+++.+.... +. ..+..++.++...|++++|+..++++++. .| + ...+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHH
Confidence 344566677788888888888887774221 22 46777778888888888888888888774 34 3 566778
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 775 IVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 775 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
++.++...|++++|+..++++.+..|+++..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 8888888888888888888888888776544
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.43 E-value=3.7e-07 Score=84.86 Aligned_cols=132 Identities=10% Similarity=0.022 Sum_probs=98.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC--------------HH
Q 003449 671 MYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV-PD--------------VI 735 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~--------------~~ 735 (819)
+......|+++++.+.|+...+.. ......+..+...+...|++++|...|++.++.... |+ ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 344455667777777776443321 113567778889999999999999999999984221 10 26
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 736 TYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
.+..++.+|...|++++|+..++++++. .| +...+..++.+|...|++++|+..++++++.+|.+...
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 158 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence 8889999999999999999999999985 45 78899999999999999999999999999999988554
No 167
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.40 E-value=1e-05 Score=67.19 Aligned_cols=111 Identities=14% Similarity=0.040 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003449 664 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 743 (819)
Q Consensus 664 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 743 (819)
...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|...+++..+... .+...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 3456677778888888888888888888753 23677788888888888888888888888887532 256678888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 003449 744 YAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDG 778 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~ 778 (819)
+...|++++|...++++.+. .| +...+..++..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH--EANNPQLKEGLQNM 115 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHh
Confidence 88889999999998888873 45 55555555544
No 168
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.39 E-value=3.7e-06 Score=72.93 Aligned_cols=97 Identities=7% Similarity=-0.108 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003449 665 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASY 744 (819)
Q Consensus 665 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 744 (819)
..+..+...+.+.|++++|+..|++++... +.+...|..+..+|...|++++|+..|+++++... .+...+..++.+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHH
Confidence 445667778888899999999999888753 23678888888889999999999999999888532 2556788888889
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 003449 745 AADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 745 ~~~g~~~~A~~~~~~~~~~ 763 (819)
...|++++|+..++++++.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998873
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.38 E-value=3e-06 Score=72.11 Aligned_cols=99 Identities=13% Similarity=0.174 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 003449 701 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGC--KPN----QNTYNS 774 (819)
Q Consensus 701 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p~----~~~~~~ 774 (819)
.+..++..+...|++++|...++++.+.. ..+...+..++.++...|++++|+.+++++++... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444555555555555555555555432 11344455555555555555555555555554210 011 445555
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCC
Q 003449 775 IVDGYCKLNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 775 l~~~~~~~g~~~~A~~~~~~~~~~~p 800 (819)
++..|...|++++|...++++.+..|
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 55566666666666666666665555
No 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.37 E-value=1.9e-06 Score=76.84 Aligned_cols=136 Identities=16% Similarity=0.137 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HH
Q 003449 666 TYNTLMYMYSRSENFARAEDVLREILAKGIK-PD----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGL-VPD----VI 735 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~ 735 (819)
++..+...|...|++++|+..+++.++.... .+ ..++..+...+...|++++|.+.+++..+... ..+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4566777777788888888888777642100 11 24677788888888999999888888776210 111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC
Q 003449 736 TYNTFVASYAADSLFVEALDVVRYMIKQ----GCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
.+..++..+...|++++|+..++++++. +..+ ...++..++..|...|++++|.+.++++.+....
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 6778888899999999999999888753 1111 2456778899999999999999999998876443
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.37 E-value=7.9e-06 Score=69.45 Aligned_cols=115 Identities=10% Similarity=0.103 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHH
Q 003449 664 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL--VPD----VITY 737 (819)
Q Consensus 664 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p~----~~~~ 737 (819)
...+..++..+...|++++|...|+++.+.. +.+...+..++..|...|++++|...++++.+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567888999999999999999999999864 34688899999999999999999999999987421 122 6688
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003449 738 NTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCK 781 (819)
Q Consensus 738 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 781 (819)
..++.++...|++++|...++++.+. .|+...+..+......
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 89999999999999999999999984 5677777776665543
No 172
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.37 E-value=6.2e-06 Score=70.94 Aligned_cols=101 Identities=9% Similarity=0.017 Sum_probs=81.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003449 661 TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTF 740 (819)
Q Consensus 661 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 740 (819)
+.+...+..+...+...|++++|...|+++++.. +.+...|..++.++...|++++|...+++..+... .+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 3466778888888888999999999999888763 23577888888888999999999999998888532 256688888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 003449 741 VASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 741 ~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
+.++...|++++|+..++++++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 88999999999999999988863
No 173
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.36 E-value=2.2e-05 Score=85.25 Aligned_cols=162 Identities=12% Similarity=0.041 Sum_probs=134.5
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003449 642 RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSEN----------FARAEDVLREILAKGIKPDIISYNTVIFAYCR 711 (819)
Q Consensus 642 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 711 (819)
....++|++.++.+.... +-+..+|+.-..++...|+ +++++++++++++...+ +..+|+.-..++.+
T Consensus 42 ~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 344578899999998864 4455668777777777777 99999999999987533 78889988888999
Q ss_pred cC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc-----
Q 003449 712 NG--RMKEASRIFSEMRDSGLVPDVITYNTFVASYAADS-LFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKL----- 782 (819)
Q Consensus 712 ~g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~----- 782 (819)
.| +++++++.++++.+.... +..+|+.-..++...| .++++++.++++++. .| |...|...+..+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--CCCCccHHHHHHHHHHhhccccc
Confidence 99 779999999999996544 7789999999999999 899999999999984 56 888999888887763
Q ss_pred ---------CcHHHHHHHHHHhhhcCCCCCHHHHH
Q 003449 783 ---------NQRYEAITFVNNLSKLDPHVTKELEC 808 (819)
Q Consensus 783 ---------g~~~~A~~~~~~~~~~~p~~~~~~~~ 808 (819)
+.+++|++.++++++.+|++....+.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y 231 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFY 231 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCCCccHHHH
Confidence 67899999999999999999887543
No 174
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.35 E-value=6e-06 Score=73.75 Aligned_cols=99 Identities=10% Similarity=0.024 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003449 663 SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVA 742 (819)
Q Consensus 663 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 742 (819)
+...+..+...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|+..+++.++... -+...|..++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 34567777788888888888888888888753 22677888888888888888888888888887432 24667888888
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 003449 743 SYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 743 ~~~~~g~~~~A~~~~~~~~~~ 763 (819)
+|...|++++|+..++++++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888899999888888873
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=1.5e-05 Score=69.55 Aligned_cols=113 Identities=9% Similarity=-0.018 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003449 662 PSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITY 737 (819)
Q Consensus 662 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 737 (819)
.+...+..+...+...|++++|...|++.++. .|+ ...|..+..+|...|++++|...+++..+.. ..+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 35666777788888888888888888888875 344 5777788888888888888888888888742 2256677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 003449 738 NTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGY 779 (819)
Q Consensus 738 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~ 779 (819)
..++.++...|++++|+..++++++. .| +..++..+....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHH
Confidence 88888888889999999998888874 45 455555555443
No 176
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.33 E-value=1.1e-05 Score=81.69 Aligned_cols=130 Identities=8% Similarity=-0.043 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003449 629 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS---------------LTTYNTLMYMYSRSENFARAEDVLREILAK 693 (819)
Q Consensus 629 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 693 (819)
...+..+...|.+.|++++|+..|++..+.. +.+ ...|..+..+|.+.|++++|+..++++++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455666666677777777777777766643 122 467888889999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 003449 694 GIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEA-LDVVRYMIK 762 (819)
Q Consensus 694 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 762 (819)
. +.+...|..+..+|...|++++|+..|+++++. .| +...+..++.++...|++++| ...+++|.+
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 236888888999999999999999999999884 34 456788888888899998888 456676654
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.32 E-value=1.7e-06 Score=92.35 Aligned_cols=127 Identities=17% Similarity=0.116 Sum_probs=93.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003449 671 MYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLF 750 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 750 (819)
...+.+.|++++|++.++++++.. +.+...|..++.+|.+.|++++|++.++++.+... -+...+..++.+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 345567788888888888888753 22578888888888889999999999988888422 2456788888888899999
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHH--HHhcCcHHHHHHHHH-----------HhhhcCCC
Q 003449 751 VEALDVVRYMIKQGCKP-NQNTYNSIVDG--YCKLNQRYEAITFVN-----------NLSKLDPH 801 (819)
Q Consensus 751 ~~A~~~~~~~~~~g~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~~~~~~p~ 801 (819)
++|+..++++++. .| +...+..++.+ +.+.|++++|++.++ ++.+.+|.
T Consensus 91 ~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 91 RAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 9999999998874 45 45566666666 778899999999888 66666654
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.31 E-value=1.2e-06 Score=89.02 Aligned_cols=154 Identities=6% Similarity=-0.111 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003449 629 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFA 708 (819)
Q Consensus 629 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 708 (819)
...+..+...+.+.|++++|...|++..+. .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 344556666666777777777777776654 233221 122233333322211 1377888899
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH-HHhcCcH
Q 003449 709 YCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDG-YCKLNQR 785 (819)
Q Consensus 709 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~-~~~~g~~ 785 (819)
|.+.|++++|+..+++.++. .| +...|..++.+|...|++++|+..++++++ +.| +..++..+... ....+..
T Consensus 240 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999884 34 567899999999999999999999999987 456 55666667666 3455778
Q ss_pred HHHHHHHHHhhhcCCCCCHH
Q 003449 786 YEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 786 ~~A~~~~~~~~~~~p~~~~~ 805 (819)
+++...+++++...|.++..
T Consensus 316 ~~a~~~~~~~l~~~p~~~~~ 335 (338)
T 2if4_A 316 QKQKEMYKGIFKGKDEGGAK 335 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHhhCCCCCCCCC
Confidence 88999999999999887653
No 179
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.27 E-value=5.9e-06 Score=89.71 Aligned_cols=187 Identities=10% Similarity=0.044 Sum_probs=146.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 003449 609 LLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQM----------VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE 678 (819)
Q Consensus 609 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 678 (819)
..++|.+.++++..... .+..+|+.-..++...|+ ++++++.++.+.+.. +-+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 34567888888877642 256667766666666666 899999999999864 667888999999999999
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------
Q 003449 679 --NFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG-RMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD-------- 747 (819)
Q Consensus 679 --~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-------- 747 (819)
+++++++.++++++.+.. +...|+.-...+.+.| .++++++.++++++..+. |..+|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 779999999999987533 7888888888888889 899999999999886444 677888888777663
Q ss_pred ------CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHH------------HHHHHHHhhhcCCC
Q 003449 748 ------SLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYE------------AITFVNNLSKLDPH 801 (819)
Q Consensus 748 ------g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~------------A~~~~~~~~~~~p~ 801 (819)
+.+++|+++++++++ ..| |...|..+...+.+.|+.++ |+..|+++.+.+|.
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred cccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 568999999999998 457 78999999999988888655 44445666655554
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.26 E-value=1.1e-05 Score=85.76 Aligned_cols=128 Identities=10% Similarity=0.006 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003449 666 TYNTLMYMYSRSENFARAEDVLREILAKGIKPD--------------IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV 731 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 731 (819)
.+..+...|.+.|++++|+..|+++++...... ...|..+..+|.+.|++++|+..++++++...
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p- 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS- 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-
Confidence 455555666666666666666666665321110 46777788888888888888888888887422
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHH-HHHHhh
Q 003449 732 PDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAIT-FVNNLS 796 (819)
Q Consensus 732 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 796 (819)
.+...|..++.+|...|++++|+..++++++ +.| +..++..++.++.+.|++++|.+ .++++.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2456778888888888888888888888887 456 56777788888888888777653 344443
No 181
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.20 E-value=4.3e-06 Score=71.71 Aligned_cols=95 Identities=14% Similarity=0.057 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh
Q 003449 713 GRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSL----------FVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCK 781 (819)
Q Consensus 713 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 781 (819)
+.+++|++.+++.++.... +...|..++.++...++ +++|+..++++++ +.| +..+|..++.+|..
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHH
Confidence 4455566666665553211 44455555555555544 4688888888888 566 56788888888887
Q ss_pred cC-----------cHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 003449 782 LN-----------QRYEAITFVNNLSKLDPHVTKELECKLSD 812 (819)
Q Consensus 782 ~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~~l~~ 812 (819)
.| ++++|+..|+++++++|++. .|..-++
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~--~y~~al~ 132 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT--HYLKSLE 132 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH--HHHHHHH
Confidence 64 88999999999999988873 3444443
No 182
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.20 E-value=1.2e-05 Score=67.24 Aligned_cols=93 Identities=14% Similarity=0.047 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 003449 667 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYA 745 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~ 745 (819)
+..+...+.+.|++++|+..|+++++.. +.+...|..+..++...|++++|+..|++.++. .| +...+..++.++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3445667778888888888888888753 225777888888888888888888888888874 34 4567778888888
Q ss_pred hcCChHHHHHHHHHHHH
Q 003449 746 ADSLFVEALDVVRYMIK 762 (819)
Q Consensus 746 ~~g~~~~A~~~~~~~~~ 762 (819)
..|++++|+..++++++
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88888888888888876
No 183
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=8.8e-05 Score=78.56 Aligned_cols=123 Identities=7% Similarity=-0.087 Sum_probs=57.4
Q ss_pred HhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC--C-CHHHHHHHHHHH
Q 003449 675 SRSENFARAEDVLREILA----KGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDS--GLV--P-DVITYNTFVASY 744 (819)
Q Consensus 675 ~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~--p-~~~~~~~l~~~~ 744 (819)
...|++++|..++++... .+..+. ..++..++..|...|++++|..+++++... +.. + ...++...+..|
T Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (434)
T 4b4t_Q 106 QVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVY 185 (434)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 344555555555554432 111111 334455555555555666665555555431 111 1 112455555555
Q ss_pred HhcCChHHHHHHHHHHHHc--CC-CC-C--HHHHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 003449 745 AADSLFVEALDVVRYMIKQ--GC-KP-N--QNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 745 ~~~g~~~~A~~~~~~~~~~--g~-~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
...|++++|..+++++... .+ .| . ..++..++..+...|++++|...+.++.+
T Consensus 186 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 186 HKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5556666666555555421 01 11 0 23344445555555666666555555543
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.17 E-value=1.8e-05 Score=81.16 Aligned_cols=120 Identities=9% Similarity=0.061 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC--------------CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003449 667 YNTLMYMYSRSENFARAEDVLREILAKG--------------IK-PDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV 731 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 731 (819)
+..+...+.+.|++++|++.|+++++.- .. .+...|..+..+|.+.|++++|++.++++++. .
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~ 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--D 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--C
Confidence 4455556666666666666666665410 01 13456666667777777777777777777663 3
Q ss_pred C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHH
Q 003449 732 P-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAIT 790 (819)
Q Consensus 732 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~ 790 (819)
| +...|..++.+|...|++++|+..++++++. .| +..++..+..++.+.++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3456666777777777777777777777663 44 55666666666666666665543
No 185
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.17 E-value=2.1e-05 Score=67.53 Aligned_cols=112 Identities=6% Similarity=-0.054 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHH
Q 003449 678 ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEA 753 (819)
Q Consensus 678 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A 753 (819)
+++++|.++|++..+.| .++.. |...|...+.+++|.++|++..+.| +...+..++..|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45667777777777765 22322 5566666666777777777777653 55667777777776 6777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHhhhcCC
Q 003449 754 LDVVRYMIKQGCKPNQNTYNSIVDGYCK----LNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 754 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 800 (819)
+.+++++.+.| +...+..|+..|.. .++.++|..+++++.+.+.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777777653 56667777777776 6777777777777777654
No 186
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.15 E-value=1.8e-05 Score=64.91 Aligned_cols=97 Identities=10% Similarity=-0.014 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHH
Q 003449 664 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP---DVITYNTF 740 (819)
Q Consensus 664 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l 740 (819)
...+..+...+...|++++|...++++++.. +.+...+..++.++...|++++|.+.+++..+. .| +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHHH
Confidence 3455667777788888888888888887653 235677778888888888888888888888874 33 35677788
Q ss_pred HHHHHhc-CChHHHHHHHHHHHHc
Q 003449 741 VASYAAD-SLFVEALDVVRYMIKQ 763 (819)
Q Consensus 741 ~~~~~~~-g~~~~A~~~~~~~~~~ 763 (819)
+.++... |++++|++.++++++.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 8888888 8888888888888764
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.15 E-value=1.8e-05 Score=70.37 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CC--------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003449 666 TYNTLMYMYSRSENFARAEDVLREILAK--------GI--------KP-DIISYNTVIFAYCRNGRMKEASRIFSEMRDS 728 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~--------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 728 (819)
.+...+..+.+.|++++|+..|++.++. .. .| +...|..+..+|.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3445556666666666666666666543 00 11 3567888889999999999999999999885
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H-HHHHHHHHH
Q 003449 729 GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-Q-NTYNSIVDG 778 (819)
Q Consensus 729 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~-~~~~~l~~~ 778 (819)
. ..+...|..++.+|...|++++|+..++++++ +.|+ . .+...+..+
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVAREMKIV 141 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHHHHHH
Confidence 3 22566888999999999999999999999998 4674 3 334444433
No 188
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=9.1e-05 Score=78.42 Aligned_cols=56 Identities=9% Similarity=0.132 Sum_probs=31.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003449 531 LAALARGGMWEQSEKIFAEMKGGRCKPNE----------------LTYSSLLHAYANGREIDQMLALSEEIY 586 (819)
Q Consensus 531 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 586 (819)
...+.+.|++++|++.|.++.+....... ..+..+...|...|++++|...+.++.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34566778888888888777765322110 124445555555666666555555544
No 189
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.13 E-value=1.3e-05 Score=85.23 Aligned_cols=124 Identities=9% Similarity=0.096 Sum_probs=98.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHH
Q 003449 678 ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD----------------VITYNTFV 741 (819)
Q Consensus 678 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----------------~~~~~~l~ 741 (819)
+++++|++.|+...+.. .-....|..+...|.+.|++++|...|+++++. .|+ ...|..++
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHH
Confidence 34555665555444321 113567888899999999999999999999984 333 47899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHH
Q 003449 742 ASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 742 ~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
.+|.+.|++++|+..++++++. .| +...|..++.+|...|++++|+..++++++++|++....
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~ 388 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 388 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999984 56 788999999999999999999999999999999886553
No 190
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.12 E-value=5.5e-05 Score=64.00 Aligned_cols=96 Identities=11% Similarity=0.092 Sum_probs=74.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHH
Q 003449 668 NTLMYMYSRSENFARAEDVLREILAKGIKPDI---ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD----VITYNTF 740 (819)
Q Consensus 668 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l 740 (819)
..+...+...|++++|...|+++++.... +. ..+..++.++...|++++|...++++.+. .|+ ...+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHH
Confidence 34566778889999999999988875321 23 57778888889999999999999998874 333 4577888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003449 741 VASYAADSLFVEALDVVRYMIKQGCKPN 768 (819)
Q Consensus 741 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 768 (819)
+.++...|++++|+..++++++. .|+
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~--~p~ 108 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ--YPG 108 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCC
Confidence 88899999999999999999874 454
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.10 E-value=1.7e-05 Score=81.26 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003449 700 ISYNTVIFAYCRNGRMKEASRIFSEMRDS--------------GLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQG 764 (819)
Q Consensus 700 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 764 (819)
..+..+...+.+.|++++|++.|+++++. ...| +...|..++.+|.+.|++++|+..++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 301 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE-- 301 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--
Confidence 45677788899999999999999999861 0122 345788999999999999999999999998
Q ss_pred CCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 765 CKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 765 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
+.| +...|..++.+|...|++++|+..++++++++|++...
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~ 343 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAI 343 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 456 78899999999999999999999999999999987554
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.07 E-value=9.7e-06 Score=82.20 Aligned_cols=122 Identities=11% Similarity=0.006 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003449 664 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 743 (819)
Q Consensus 664 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 743 (819)
...+..+...+.+.|++++|+..|+++++. .|+... +...|+.+++...+. ...|..++.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 345666777778888888888888887764 333221 223334444433221 1378899999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHH
Q 003449 744 YAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
|.+.|++++|+..++++++. .| +...|..++.+|...|++++|+..++++++++|++....
T Consensus 240 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~ 301 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIR 301 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 99999999999999999984 56 788999999999999999999999999999999876553
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.06 E-value=5.4e-05 Score=65.06 Aligned_cols=97 Identities=10% Similarity=-0.045 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 003449 666 TYNTLMYMYSRSENFARAEDVLREILAKGIKP------D-----IISYNTVIFAYCRNGRMKEASRIFSEMRDS-----G 729 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g 729 (819)
.+......+.+.|++++|+..|++.++..... + ...|..+..++.+.|++++|+..+++.++. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34556667778888888888888888642210 2 238899999999999999999999999983 1
Q ss_pred CCCCH-HHH----HHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 730 LVPDV-ITY----NTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 730 ~~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+.|+. ..| ...+.++...|++++|+..|+++++
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 16665 477 8999999999999999999999998
No 194
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.06 E-value=7.3e-06 Score=68.18 Aligned_cols=86 Identities=10% Similarity=0.041 Sum_probs=61.8
Q ss_pred cCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003449 677 SENFARAEDVLREILAKGI--KPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEAL 754 (819)
Q Consensus 677 ~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 754 (819)
.|++++|+..|+++++.+. +.+...+..+..+|...|++++|++.|+++++.... +...+..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 5677788888888877531 223567777888888888888888888888875322 4567778888888888888888
Q ss_pred HHHHHHHHc
Q 003449 755 DVVRYMIKQ 763 (819)
Q Consensus 755 ~~~~~~~~~ 763 (819)
..++++++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888888774
No 195
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.06 E-value=2.1e-05 Score=69.80 Aligned_cols=132 Identities=9% Similarity=-0.078 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 003449 631 TLNAMISIYGRRQMVAKTNEILHFMNDSGF-TPS----LTTYNTLMYMYSRSENFARAEDVLREILAK----GIKP-DII 700 (819)
Q Consensus 631 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~ 700 (819)
++..+...+...|++++|.+.+++..+... ..+ ..++..+...+...|++++|.+.+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 445555666666666666666666554210 011 135677778888888888888888887642 1111 145
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 701 SYNTVIFAYCRNGRMKEASRIFSEMRDS----GLVP-DVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 701 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.+..+...+...|++++|.+.+++..+. +..+ ....+..++..+...|++++|...++++++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6777888888999999999998888753 1111 123677888889999999999999998876
No 196
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.02 E-value=2.2e-05 Score=83.64 Aligned_cols=118 Identities=8% Similarity=-0.099 Sum_probs=59.4
Q ss_pred HHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003449 603 VYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFAR 682 (819)
Q Consensus 603 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 682 (819)
.+.+.|++++|...|++..+.. +.+..++..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 4455566666666666655542 1235555555555666666666666666555542 3344555555555556666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 003449 683 AEDVLREILAKGIKPDIISYNTVIFA--YCRNGRMKEASRIFS 723 (819)
Q Consensus 683 A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 723 (819)
|++.|+++++... .+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666665554321 123333333333 455555555555555
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.99 E-value=3.1e-05 Score=64.10 Aligned_cols=82 Identities=15% Similarity=0.097 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 003449 717 EASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNL 795 (819)
Q Consensus 717 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 795 (819)
+|++.|+++.+... .+...+..++..+...|++++|+..++++++. .| +...|..++.+|...|++++|+..++++
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45556666655321 24456666666666777777777777776663 34 4566666777777777777777777777
Q ss_pred hhcCCC
Q 003449 796 SKLDPH 801 (819)
Q Consensus 796 ~~~~p~ 801 (819)
.+..|.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 666654
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.97 E-value=0.00023 Score=60.96 Aligned_cols=111 Identities=10% Similarity=-0.076 Sum_probs=85.3
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 003449 643 QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR----NGRMKEA 718 (819)
Q Consensus 643 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 718 (819)
+++++|.+.|++..+.| .+... +...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45677888888887776 33333 6667777777888888888888764 66777778888877 7888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 003449 719 SRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEALDVVRYMIKQG 764 (819)
Q Consensus 719 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 764 (819)
.++|++..+.| +...+..++..|.. .+++++|+.+++++.+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888888754 56677888888887 788888888888888865
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.95 E-value=1.1e-05 Score=66.35 Aligned_cols=94 Identities=7% Similarity=0.083 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------HHH
Q 003449 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-------QNT 771 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~ 771 (819)
...+..+...+...|++++|.+.|++.++.. ..+...+..++.++...|++++|+..++++++ +.|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHHH
Confidence 4455666666677777777777777766632 12455666777777777777777777777776 3443 455
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHh
Q 003449 772 YNSIVDGYCKLNQRYEAITFVNNL 795 (819)
Q Consensus 772 ~~~l~~~~~~~g~~~~A~~~~~~~ 795 (819)
+..++.++...|+.++|+..++++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHh
Confidence 556666666666666665544443
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.92 E-value=0.00013 Score=76.92 Aligned_cols=127 Identities=9% Similarity=-0.041 Sum_probs=83.5
Q ss_pred HHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHH
Q 003449 674 YSRSENFARAEDVLREILAK---GIKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRDS-----GL-VPDV-ITYNT 739 (819)
Q Consensus 674 ~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~-~p~~-~~~~~ 739 (819)
+...|++++|+.++++.++. -+.++ ..+++.|+.+|...|++++|..++++.++- |. .|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777766532 11222 456777778888888888888887777651 21 1222 36778
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCC
Q 003449 740 FVASYAADSLFVEALDVVRYMIKQ---GCKPN----QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 740 l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 800 (819)
|+..|...|++++|+.+++++++. -+.|| ..+...+..++...|++++|...++++.+..-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888888888877641 12232 34455677777788888888888888776543
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.86 E-value=3.3e-05 Score=61.86 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCC
Q 003449 733 DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 733 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
+...+..++.+|...|++++|+..++++++. .| +...|..++.+|...|++++|+..+++++++.|..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 3456666667777777777777777777663 34 45666677777777777777777777777665543
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.00014 Score=59.50 Aligned_cols=68 Identities=18% Similarity=0.185 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCC
Q 003449 733 DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 733 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
+...+..++..+...|++++|+..++++++. .| +...|..++.+|...|++++|+..++++++.+|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 4567888999999999999999999999984 45 78899999999999999999999999999999987
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.72 E-value=0.0001 Score=63.14 Aligned_cols=94 Identities=14% Similarity=0.057 Sum_probs=65.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 003449 676 RSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM----------KEASRIFSEMRDSGLVP-DVITYNTFVASY 744 (819)
Q Consensus 676 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~ 744 (819)
+.+.+++|++.+++.++.. +.+...|..+..++...+++ ++|+..|++.++ +.| +..+|..++.+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHH
Confidence 4456677777777777653 22566777677777666554 588888888887 444 445788888888
Q ss_pred HhcC-----------ChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003449 745 AADS-----------LFVEALDVVRYMIKQGCKPNQNTYNS 774 (819)
Q Consensus 745 ~~~g-----------~~~~A~~~~~~~~~~g~~p~~~~~~~ 774 (819)
...| ++++|+..|+++++ +.|+...|..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~ 129 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLK 129 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHH
Confidence 7764 89999999999998 5786554433
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.71 E-value=0.00015 Score=56.56 Aligned_cols=68 Identities=19% Similarity=0.348 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCH
Q 003449 735 ITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 735 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
..+..++..+...|++++|+..++++++. .| +..++..++.++.+.|++++|...++++.+.+|.+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 78 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHH
Confidence 35556666666677777777777776663 33 5566666777777777777777777777777666533
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.71 E-value=0.00035 Score=73.80 Aligned_cols=125 Identities=8% Similarity=0.008 Sum_probs=88.0
Q ss_pred HHHhcCChHHHHHHHHHHhhC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHH
Q 003449 638 IYGRRQMVAKTNEILHFMNDS---GFTP----SLTTYNTLMYMYSRSENFARAEDVLREILAK-----GI-KPD-IISYN 703 (819)
Q Consensus 638 ~~~~~~~~~~A~~~~~~~~~~---~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~~~~~ 703 (819)
.+...|++++|+.++++..+. -+.+ ...+++.++.+|...|++++|+.++++.++. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345667777777777766542 1112 2245788888888888888888888877631 21 122 56788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 704 TVIFAYCRNGRMKEASRIFSEMRD-----SGLV-PDV-ITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 704 ~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~-p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.|+..|...|++++|..++++..+ .|.. |+. .+...+..++...+++++|..+++++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999988875 2322 222 2456777778888899999999998876
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.70 E-value=0.00033 Score=54.55 Aligned_cols=82 Identities=13% Similarity=0.208 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003449 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 777 (819)
...+..+...+...|++++|...+++..+.. ..+...+..++.++...|++++|+..++++++. .| +...+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 4566677777778888888888888877642 224567777888888888888888888888774 45 5667777777
Q ss_pred HHHhcC
Q 003449 778 GYCKLN 783 (819)
Q Consensus 778 ~~~~~g 783 (819)
++.+.|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 665543
No 207
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.67 E-value=0.00034 Score=59.16 Aligned_cols=89 Identities=11% Similarity=0.203 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCcHHHHH
Q 003449 715 MKEASRIFSEMRDSGLVPDVITYNTFVASYAADS---LFVEALDVVRYMIKQGCKP--NQNTYNSIVDGYCKLNQRYEAI 789 (819)
Q Consensus 715 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~ 789 (819)
...+.+-|.+..+.|. ++..+...+++++++.+ ++++++.+++...+.+ .| +...++.++-+|++.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4566677777766654 68888889999999988 6779999999998864 35 4677888999999999999999
Q ss_pred HHHHHhhhcCCCCCHH
Q 003449 790 TFVNNLSKLDPHVTKE 805 (819)
Q Consensus 790 ~~~~~~~~~~p~~~~~ 805 (819)
++++++++.+|++...
T Consensus 92 ~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhcCCCCHHH
Confidence 9999999999988655
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.59 E-value=0.00042 Score=55.11 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=45.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 003449 706 IFAYCRNGRMKEASRIFSEMRDSGLVPDVI-TYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLN 783 (819)
Q Consensus 706 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g 783 (819)
+..+...|++++|.+.++++.+... .+.. .+..++.++...|++++|+..++++++. .|+ ...+.. +
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH--------H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH--------H
Confidence 4455566666666666666665321 1334 5556666666666666666666666653 342 222211 4
Q ss_pred cHHHHHHHHHHhhhcCCCC
Q 003449 784 QRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 784 ~~~~A~~~~~~~~~~~p~~ 802 (819)
.+.++...++++...+|++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 4555566665555555544
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.57 E-value=0.00052 Score=56.47 Aligned_cols=79 Identities=11% Similarity=0.074 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003449 682 RAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMI 761 (819)
Q Consensus 682 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 761 (819)
+|++.|+++++.. +.+...+..++..|...|++++|...|++.++... .+...|..++.++...|++++|+..+++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666643 22566777777777777777777777777776421 245567777777777778888877777776
Q ss_pred H
Q 003449 762 K 762 (819)
Q Consensus 762 ~ 762 (819)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.50 E-value=0.0002 Score=57.00 Aligned_cols=66 Identities=15% Similarity=0.261 Sum_probs=51.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHH-HHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHH
Q 003449 739 TFVASYAADSLFVEALDVVRYMIKQGCKP-NQN-TYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
..+..+...|++++|+..++++++. .| +.. .+..++.+|...|++++|+..++++++.+|++....
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3456677888888888888888874 45 556 778888888888888888888888888888877654
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.48 E-value=0.00063 Score=52.97 Aligned_cols=68 Identities=12% Similarity=-0.047 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC
Q 003449 732 PDVITYNTFVASYAADSL---FVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 732 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
.|...+..++.+++..++ .++|..+++++++ ..| +...+..++..+.+.|++++|+..|+++++.+|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456677788888765544 7899999999988 456 6788888899999999999999999999998888
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.43 E-value=0.00089 Score=53.74 Aligned_cols=73 Identities=8% Similarity=0.032 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 733 DVITYNTFVASYAADSLFVEALDVVRYMIKQG------CKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 733 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
+...+..++..+...|+++.|+.+++.+++.- -.+...++..++.+|.+.|++++|+.+++++++..|++...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 34455677777888888888888888777531 12245677788888888888888888888888888887555
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.33 E-value=0.0023 Score=63.29 Aligned_cols=71 Identities=15% Similarity=0.002 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCC
Q 003449 731 VPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 731 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 803 (819)
..+..+|..++..+...|++++|+..++++++. .|+...|..++..+.-.|+.++|.+.++++..++|...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 446677888877777789999999999999985 47877788889999999999999999999999988763
No 214
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.32 E-value=0.00081 Score=53.58 Aligned_cols=64 Identities=17% Similarity=0.118 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 698 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 698 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+...+..++.+|...|++++|++.|+++++.... +...|..++.+|...|++++|+..++++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4566667777777777777777777777764221 345667777777777777777777777765
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.19 E-value=0.0015 Score=67.65 Aligned_cols=94 Identities=9% Similarity=-0.072 Sum_probs=56.0
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHH
Q 003449 712 NGRMKEASRIFSEMRDS---GLVPDV----ITYNTFVASYAADSLFVEALDVVRYMIKQ---GCKPN----QNTYNSIVD 777 (819)
Q Consensus 712 ~g~~~~A~~~~~~~~~~---g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~----~~~~~~l~~ 777 (819)
.|++++|..++++.++. -+.|+. .+++.++.+|...|+|++|+.+++++++. -+.|+ ..+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35666666666665541 122221 25667777777777777777777776531 11221 355677777
Q ss_pred HHHhcCcHHHHHHHHHHhhh-----cCCCCCHH
Q 003449 778 GYCKLNQRYEAITFVNNLSK-----LDPHVTKE 805 (819)
Q Consensus 778 ~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~ 805 (819)
.|..+|++++|..+++++++ +||+.+.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 77777777777777777654 35655433
No 216
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.16 E-value=0.0026 Score=51.61 Aligned_cols=97 Identities=12% Similarity=0.188 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCcHHHH
Q 003449 714 RMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVE---ALDVVRYMIKQGCKP--NQNTYNSIVDGYCKLNQRYEA 788 (819)
Q Consensus 714 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A 788 (819)
....+.+-|.+....|. ++..+-..+++++.+..+..+ ++.+++.+.+.+ .| .......++-++++.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34556666666655554 678888888999998887655 888888887753 23 346677889999999999999
Q ss_pred HHHHHHhhhcCCCCCHH-HHHHHHH
Q 003449 789 ITFVNNLSKLDPHVTKE-LECKLSD 812 (819)
Q Consensus 789 ~~~~~~~~~~~p~~~~~-~~~~l~~ 812 (819)
+++++.+++..|++... ....+|+
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELERLID 118 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999988555 3444443
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.09 E-value=0.0068 Score=59.96 Aligned_cols=142 Identities=14% Similarity=0.123 Sum_probs=91.0
Q ss_pred CCCHHHHHHHHHHHH--h---cCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHh---cC--C---HHHHHHHHHHHH
Q 003449 626 SPDIPTLNAMISIYG--R---RQMVAKTNEILHFMNDSGFTPS-LTTYNTLMYMYSR---SE--N---FARAEDVLREIL 691 (819)
Q Consensus 626 ~~~~~~~~~l~~~~~--~---~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g--~---~~~A~~~~~~~~ 691 (819)
+.+..+|..++.+.. . .....+|+.+|++..+. .|+ ...|..+..+|.. .+ . .......++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 345555655554432 2 22346778888888775 343 3444444444321 11 1 111111222211
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003449 692 AK-GIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQN 770 (819)
Q Consensus 692 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 770 (819)
.. ....+..+|..+...+...|++++|...+++++.. .|+...|..++..+.-.|++++|++.++++.. +.|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcC
Confidence 11 12346788888877777789999999999999995 47888888889999999999999999999998 578776
Q ss_pred HHH
Q 003449 771 TYN 773 (819)
Q Consensus 771 ~~~ 773 (819)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.01 E-value=0.0052 Score=63.80 Aligned_cols=99 Identities=7% Similarity=-0.151 Sum_probs=70.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCC----HHHH
Q 003449 707 FAYCRNGRMKEASRIFSEMRDS---GLVPDV----ITYNTFVASYAADSLFVEALDVVRYMIKQ---GCKPN----QNTY 772 (819)
Q Consensus 707 ~~~~~~g~~~~A~~~~~~~~~~---g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~----~~~~ 772 (819)
..+...|++++|+.++++.++. -+.|+. .+++.++.+|...|+|++|+.+++++++. -+.|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3355677888888888888763 122332 36788888888889999998888887641 12232 3567
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhhh-----cCCCCCHH
Q 003449 773 NSIVDGYCKLNQRYEAITFVNNLSK-----LDPHVTKE 805 (819)
Q Consensus 773 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~ 805 (819)
+.|+..|..+|++++|..+++++++ .||+.+..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 8888889999999999998888765 37776544
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.93 E-value=0.0053 Score=63.59 Aligned_cols=86 Identities=6% Similarity=-0.086 Sum_probs=59.6
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHH
Q 003449 677 SENFARAEDVLREILAK---GIKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRD-----SGL-VPDV-ITYNTFVA 742 (819)
Q Consensus 677 ~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~-~p~~-~~~~~l~~ 742 (819)
.|++++|+.++++.++. -+.|+ ..+++.|+.+|...|++++|..++++.++ .|. .|+. .+++.++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45677777777766531 12222 46677788888888888888888888775 232 2332 36788888
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 003449 743 SYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 743 ~~~~~g~~~~A~~~~~~~~~ 762 (819)
.|..+|++++|+.+++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88888888888888888764
No 220
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.85 E-value=0.015 Score=47.21 Aligned_cols=84 Identities=10% Similarity=0.075 Sum_probs=65.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 729 GLVPDVITYNTFVASYAADSL---FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 729 g~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
+-.|+..+-..+++++.+..+ ..+++.+++.+.+.+..-....+..++-++++.|++++|+++.+.+++..|++...
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 456788888889999998876 45788999998875421245778889999999999999999999999999999666
Q ss_pred -HHHHHHH
Q 003449 806 -LECKLSD 812 (819)
Q Consensus 806 -~~~~l~~ 812 (819)
....+|+
T Consensus 115 ~~Lk~~Ie 122 (134)
T 3o48_A 115 GALKSMVE 122 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 3344443
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.85 E-value=0.19 Score=47.60 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhc-Cc
Q 003449 716 KEASRIFSEMRDSGLVPD---VITYNTFVASYAAD-----SLFVEALDVVRYMIKQGCKP--NQNTYNSIVDGYCKL-NQ 784 (819)
Q Consensus 716 ~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~-g~ 784 (819)
.+|...+++.++ +.|+ ...|..++..|... |+.++|..+|+++++ +.| +..++...++.++.. |+
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCC
Confidence 444444444444 3333 22444444444442 455555555555554 233 244444444444442 55
Q ss_pred HHHHHHHHHHhhhcCCC
Q 003449 785 RYEAITFVNNLSKLDPH 801 (819)
Q Consensus 785 ~~~A~~~~~~~~~~~p~ 801 (819)
.++|.+.++++++..|.
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 55555555555555444
No 222
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.75 E-value=0.04 Score=45.44 Aligned_cols=83 Identities=8% Similarity=0.049 Sum_probs=64.1
Q ss_pred CCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH-
Q 003449 730 LVPDVITYNTFVASYAADSL---FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE- 805 (819)
Q Consensus 730 ~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~- 805 (819)
-.|+..+-..+++++.+..+ ..+++.+++.+.+.+..-.......++-++++.|++++|+++.+.+++.+|++...
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 35778888889999998876 55788889988875422245667788899999999999999999999999998555
Q ss_pred HHHHHHH
Q 003449 806 LECKLSD 812 (819)
Q Consensus 806 ~~~~l~~ 812 (819)
....+|+
T Consensus 115 ~Lk~~Ie 121 (144)
T 1y8m_A 115 ALKSMVE 121 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.73 E-value=0.014 Score=60.52 Aligned_cols=91 Identities=10% Similarity=0.027 Sum_probs=68.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCCH-HHH
Q 003449 672 YMYSRSENFARAEDVLREILAK---GIKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRD-----SGL-VPDV-ITY 737 (819)
Q Consensus 672 ~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~-~p~~-~~~ 737 (819)
..+...|++++|+.++++.++. -+.++ ..+++.++..|...|++++|+.+++++++ .|. .|+. .++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3355678888888888888743 12222 56788888899999999999999988875 221 2322 368
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 738 NTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 738 ~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+.++..|...|++++|+.+++++++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8999999999999999999998874
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.64 E-value=0.093 Score=60.37 Aligned_cols=121 Identities=15% Similarity=0.120 Sum_probs=67.7
Q ss_pred HhCCCHHHHHH-HHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003449 325 GKCRRPKEAMQ-VLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESA 403 (819)
Q Consensus 325 ~~~g~~~~A~~-~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A 403 (819)
...+++++|.+ ++..+ ++......++..+.+.|..++|+++.+.- .. -.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~---------~~---~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ---------DQ---KFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH---------HH---HHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc---------ch---heehhhhcCCHHHH
Confidence 34667777766 44221 10122256666677777777777655321 11 12234556777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003449 404 MKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFK 478 (819)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 478 (819)
.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.. |..+...+...|+.+...++.+
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHH
Confidence 7765432 2566777777777777777777777776542 2334444444555544444333
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.53 E-value=0.017 Score=48.79 Aligned_cols=84 Identities=13% Similarity=0.130 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHH
Q 003449 680 FARAEDVLREILAKGIKPDIISYNTVIFAYCRNG---RMKEASRIFSEMRDSGLVP--DVITYNTFVASYAADSLFVEAL 754 (819)
Q Consensus 680 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~ 754 (819)
...+.+.|.+..+.+. ++..+...+..++++.+ ++++++.++++..+.. .| ....+..++-++++.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4445555555555443 45666666666666666 4556666666666642 13 2345556666667777777777
Q ss_pred HHHHHHHHcCCCC
Q 003449 755 DVVRYMIKQGCKP 767 (819)
Q Consensus 755 ~~~~~~~~~g~~p 767 (819)
++++.+++ ++|
T Consensus 92 ~y~~~lL~--ieP 102 (152)
T 1pc2_A 92 KYVRGLLQ--TEP 102 (152)
T ss_dssp HHHHHHHH--HCT
T ss_pred HHHHHHHh--cCC
Confidence 77777766 456
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.33 E-value=0.036 Score=44.09 Aligned_cols=68 Identities=6% Similarity=-0.031 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003449 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSG------LVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 768 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 768 (819)
..-+..|+..+.+.|+++.|..+|+++.+.- -.+...++..++.++.+.|++++|+.+++++.+ +.|+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~ 78 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPE 78 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCC
Confidence 3444566666777777777777777766520 112345677788888888888888888888877 4563
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.18 E-value=0.029 Score=53.01 Aligned_cols=107 Identities=12% Similarity=0.086 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc-
Q 003449 679 NFARAEDVLREILAKGIKPD---IISYNTVIFAYCRN-----GRMKEASRIFSEMRDSGLVP--DVITYNTFVASYAAD- 747 (819)
Q Consensus 679 ~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~- 747 (819)
....|...++++++. .|+ ...|..+...|.+. |+.++|.+.|++.++ +.| +..++..++..++..
T Consensus 178 ~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 178 TVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTT
T ss_pred hHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhc
Confidence 467888999999985 566 56888999999884 999999999999999 555 367888889989885
Q ss_pred CChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 003449 748 SLFVEALDVVRYMIKQGCK--PNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 748 g~~~~A~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
|+.++|..++++++..+.. |+.... + .+..++|..+++++.+
T Consensus 254 gd~~~a~~~L~kAL~a~p~~~P~~~la----n----~~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPESVPHNKLL----V----ILSQKRARWLKAHVQD 297 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGGCSSCHHH----H----HHHHHHHHHHHHTHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCChhHH----H----HHHHHHHHHHHHHhHH
Confidence 9999999999999986544 443332 2 2345677777776544
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.16 E-value=0.062 Score=44.60 Aligned_cols=54 Identities=7% Similarity=-0.156 Sum_probs=32.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCC
Q 003449 748 SLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 748 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
++.++|.++|+.+++.+ +--..+|...+..-.++|+.+.|++++.+++.++|.+
T Consensus 74 ~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56666666666665431 1125566666666666666666666666666666655
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.14 E-value=0.16 Score=58.27 Aligned_cols=129 Identities=13% Similarity=0.101 Sum_probs=67.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc
Q 003449 283 NTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARD 362 (819)
Q Consensus 283 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 362 (819)
..++..+.+.|..++|.++.+.-. .-.......|++++|.++.+.+ .+...|..|...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 445555555666666655442111 1122344567777776665443 3556677777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 003449 363 GLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVF 442 (819)
Q Consensus 363 g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 442 (819)
|+++.|.+.|.++.. |..+...+...|+.+...++-+.....|. ++.....|.+.|++++|++++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 777777777766543 33344444455666555555444444321 122233344455555555554
Q ss_pred HH
Q 003449 443 DE 444 (819)
Q Consensus 443 ~~ 444 (819)
.+
T Consensus 760 ~~ 761 (814)
T 3mkq_A 760 IK 761 (814)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 230
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.13 E-value=0.035 Score=42.94 Aligned_cols=64 Identities=11% Similarity=0.079 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003449 698 DIISYNTVIFAYCRNGR---MKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 698 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
+...+..+..++...++ .++|..++++.++. .| +......++..+...|++++|+.+++++++.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45555566655543333 56666666666663 33 3345666666666677777777777776663
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.44 Score=41.36 Aligned_cols=101 Identities=13% Similarity=0.087 Sum_probs=62.4
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003449 324 YGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESA 403 (819)
Q Consensus 324 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A 403 (819)
....|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34667777777776665 2566777777777777777777777776543 33344445566776666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003449 404 MKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEI 445 (819)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 445 (819)
.++-+.....| -++.....+...|+++++.++|.+.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 65555554443 1233344455567777777776553
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.71 Score=40.07 Aligned_cols=100 Identities=10% Similarity=0.080 Sum_probs=61.7
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003449 640 GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEAS 719 (819)
Q Consensus 640 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 719 (819)
...|+++.|.++.+.+ .+...|..+.......|+++-|++.|.+..+ +..+...|.-.|+.+.-.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 4567777777776654 2566777777777777777777777776532 223344455567766666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003449 720 RIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYM 760 (819)
Q Consensus 720 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 760 (819)
++-+.....| -++....++...|+++++++++.+.
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5555554433 2333444566677777777776544
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.53 E-value=0.058 Score=43.75 Aligned_cols=87 Identities=14% Similarity=0.117 Sum_probs=57.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChH
Q 003449 677 SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKE---ASRIFSEMRDSGLVP--DVITYNTFVASYAADSLFV 751 (819)
Q Consensus 677 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~ 751 (819)
...+..+.+.|.+....|. ++..+-..++.++.+.++..+ ++.+++++.+.+ .| .......++-++++.|+|+
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 3445556666666555443 566666677777777776554 777777776642 12 2235556777788888888
Q ss_pred HHHHHHHHHHHcCCCC
Q 003449 752 EALDVVRYMIKQGCKP 767 (819)
Q Consensus 752 ~A~~~~~~~~~~g~~p 767 (819)
+|.++++.+++ +.|
T Consensus 92 ~A~~~~~~lL~--~eP 105 (126)
T 1nzn_A 92 KALKYVRGLLQ--TEP 105 (126)
T ss_dssp HHHHHHHHHHH--HCT
T ss_pred HHHHHHHHHHH--hCC
Confidence 88888888887 567
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.43 E-value=0.2 Score=41.58 Aligned_cols=102 Identities=9% Similarity=0.070 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003449 663 SLTTYNTLMYMYSRSENF------ARAEDVLREILAKGIKPDI--------ISYNTVIFAYCRNGRMKEASRIFSEMRDS 728 (819)
Q Consensus 663 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 728 (819)
|..+|-..+....+.|+. ++.+++|+++... ++|+. ..|.-.+ .+...++.++|.++|+.++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 444444444444444555 5556666666543 34431 1111111 123446788888888888664
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003449 729 GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP 767 (819)
Q Consensus 729 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 767 (819)
+-.- ...|...+..-.++|+...|.+++.+++..+..|
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 2222 5566677776778888888888888888755333
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.75 E-value=1.4 Score=35.82 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003449 455 VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGV 520 (819)
Q Consensus 455 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 520 (819)
...+..+..+...|..++-.+++.++.. +..|++.....+..+|.+.|+..+|.+++.+..+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344445555555555555555555432 2344555555556666666666666666665555544
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.51 E-value=1.6 Score=35.47 Aligned_cols=139 Identities=12% Similarity=0.048 Sum_probs=79.2
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003449 642 RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRI 721 (819)
Q Consensus 642 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 721 (819)
.|..++..++..+.... .+..-||-++--....-+-+-..+.++.+-+. + | ...+|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--D----------is~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--D----------LDKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--C----------GGGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-c--C----------cHhhhcHHHHHHH
Confidence 46666666666666553 23333443333333333444444444444321 1 2 1223444444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCC
Q 003449 722 FSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 722 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
+-.+ .-+...++..+..+..+|+-++-.+++..+.. +..|++.....++.+|.+.|+..+|.++++++-+.|..
T Consensus 84 ~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4332 11334455556667777887777777777543 24667888888888888888888888888888877654
Q ss_pred C
Q 003449 802 V 802 (819)
Q Consensus 802 ~ 802 (819)
.
T Consensus 158 E 158 (172)
T 1wy6_A 158 E 158 (172)
T ss_dssp H
T ss_pred H
Confidence 3
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.27 E-value=9 Score=43.20 Aligned_cols=153 Identities=4% Similarity=0.021 Sum_probs=68.4
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHH-H---HHHHHHHHhcCC
Q 003449 569 YANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPT-L---NAMISIYGRRQM 644 (819)
Q Consensus 569 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~---~~l~~~~~~~~~ 644 (819)
+.-.|+.+....++..+.+.. ..+..-...+.-++...|+.+.+..+.+.+... .+... | ..+.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCC
Confidence 344556555555555554421 111122222233333556666666666665542 12221 1 123334556666
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHH
Q 003449 645 VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR-MKEASRIFS 723 (819)
Q Consensus 645 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~ 723 (819)
.....++++.+.... ..+..-...+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|+ ..+|.+++.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 655555666666531 1122222222223334555555555555444432 3333333333333333333 256666666
Q ss_pred HHHH
Q 003449 724 EMRD 727 (819)
Q Consensus 724 ~~~~ 727 (819)
.+..
T Consensus 654 ~L~~ 657 (963)
T 4ady_A 654 PLTK 657 (963)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 6653
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.23 E-value=4.4 Score=41.94 Aligned_cols=271 Identities=9% Similarity=0.072 Sum_probs=137.3
Q ss_pred CChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 003449 503 GSFDQAMSIYKRMLEA-----GVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQ 577 (819)
Q Consensus 503 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 577 (819)
|+++.|++.+..+.+. +..........++..|...|+|+...+.+.-+....-.. ......+++.+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~------- 101 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVM------- 101 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHH-------
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHH-------
Confidence 6788888877666542 344456777888888888899888877776655432111 122222322211
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003449 578 MLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSP---DIPTLNAMISIYGRRQMVAKTNEILHF 654 (819)
Q Consensus 578 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~ 654 (819)
..+... ...+..+...++..... ..+..+-. .......|+..|...|++.+|.+++..
T Consensus 102 --~~l~~~----~~~d~~~~~~~i~~l~~-------------vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~ 162 (445)
T 4b4t_P 102 --EYLKSS----KSLDLNTRISVIETIRV-------------VTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCE 162 (445)
T ss_dssp --HHHHHH----CTTHHHHHHHHHHCCSS-------------SSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred --HHHhcC----CchhHHHHHHHHHHHHH-------------HhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 111100 00011111111110000 00000011 112234566777778888888888877
Q ss_pred HhhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003449 655 MNDS--GFTPS---LTTYNTLMYMYSRSENFARAEDVLREIL----AKGIKPD--IISYNTVIFAYCRNGRMKEASRIFS 723 (819)
Q Consensus 655 ~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 723 (819)
+... |.... ...+...++.|...+++.+|..+++++. .....|+ ...+...+..+...+++.+|.+.|.
T Consensus 163 l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~ 242 (445)
T 4b4t_P 163 LQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQ 242 (445)
T ss_dssp HHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 7532 21111 1345566777888888888888888764 2222222 3456666777788888888888888
Q ss_pred HHHHC-CCCCCHHH----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CcHHHHHHHHHHhh
Q 003449 724 EMRDS-GLVPDVIT----YNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKL--NQRYEAITFVNNLS 796 (819)
Q Consensus 724 ~~~~~-g~~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~ 796 (819)
++.+. ...-|... ...++.+..-.+...+--.++.+..+...-++...+..++.++... .++..+.+.++..+
T Consensus 243 e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 243 EIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 77652 11112221 1222222222222122222233332221223456677777777543 45666666666555
Q ss_pred hcCC
Q 003449 797 KLDP 800 (819)
Q Consensus 797 ~~~p 800 (819)
..++
T Consensus 323 ~~~~ 326 (445)
T 4b4t_P 323 NEDD 326 (445)
T ss_dssp TTCC
T ss_pred cccc
Confidence 4443
No 239
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.13 E-value=7.7 Score=41.90 Aligned_cols=115 Identities=9% Similarity=-0.057 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003449 679 NFARAEDVLREILAKGIKPDII----SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEAL 754 (819)
Q Consensus 679 ~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 754 (819)
+.+.|...|....+.. ..+.. .+..++..+...+...++...+...... ..+.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 5666666666665322 11221 1222222223333244555555554432 223322333333334557777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 003449 755 DVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 755 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
.+++.|.... .....-..-+++++...|+.++|..+++++.+
T Consensus 306 ~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7776664321 11333344566666666777777777666654
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.70 E-value=0.66 Score=51.09 Aligned_cols=54 Identities=11% Similarity=0.051 Sum_probs=44.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhh
Q 003449 741 VASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLS 796 (819)
Q Consensus 741 ~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 796 (819)
+..+...|+++-|+++.++++. ..| +..+|..|+.+|.+.|+++.|+-.++-+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4446678889999999999887 466 68889999999999999999988888875
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.57 E-value=0.67 Score=37.72 Aligned_cols=70 Identities=7% Similarity=0.005 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003449 696 KPDIISYNTVIFAYCRNGR---MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP 767 (819)
Q Consensus 696 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 767 (819)
.|+..+-..++.++.+..+ ..+++.+++++.+.+..-....+..++-++.+.|++++|.++.+.+++ +.|
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP 109 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HER 109 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCC
Confidence 4555555556666666554 345666666666543211234555666667777777777777777776 456
No 242
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.51 E-value=1.7 Score=35.92 Aligned_cols=70 Identities=7% Similarity=0.005 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003449 696 KPDIISYNTVIFAYCRNGR---MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP 767 (819)
Q Consensus 696 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 767 (819)
.++..+-..+..++.+..+ ..+++.+++++...+..-.......++-++++.|++++|.++.+.+++ +.|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCC
Confidence 3455555555555655554 334555666665532221223444555666666666666666666666 456
No 243
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.37 E-value=7.8e-05 Score=74.70 Aligned_cols=195 Identities=14% Similarity=0.105 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003449 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILN 251 (819)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 251 (819)
+++.|..++....+.|++++...++.-.++... +..+=+.|+-+|++.++..+-.+++. .|++.-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHH
Confidence 445566666666666666666666655544322 33444566666666666544333221 244444455555
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHH
Q 003449 252 VYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPK 331 (819)
Q Consensus 252 ~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 331 (819)
-|...| .++.|.-+|..+.. |..|...+.+.|++.+|.+.-++ ..+..||-.+-.+|...+.+.
T Consensus 153 rcf~e~-lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~Efr 216 (624)
T 3lvg_A 153 RCYDEK-MYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFR 216 (624)
T ss_dssp HHHHSC-CSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTT
T ss_pred HHHHcc-CHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHH
Confidence 555555 45554444433222 22333334445555544433211 234556666666666666665
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003449 332 EAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKA 397 (819)
Q Consensus 332 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~ 397 (819)
-|.-.--.+.-. + .-...++..|-..|.+++.+.+++.-... -......|+-|.-.|++-
T Consensus 217 LAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 217 LAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp TTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred HHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc
Confidence 554333333211 1 11223455566666666666666655422 123455566665555543
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.26 E-value=13 Score=41.85 Aligned_cols=266 Identities=12% Similarity=0.049 Sum_probs=147.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC---H--HHHHHHH
Q 003449 496 ISAYSRCGSFDQAMSIYKRMLEAGVTPDL--STYNAVLAALARGGMWEQSEKIFAEMKGGRC--KPN---E--LTYSSLL 566 (819)
Q Consensus 496 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~~~---~--~~~~~l~ 566 (819)
.-+....|+.++++.+++.....+-..+. ..-..+.-+....|..+++..++.......- .-+ . ..-..+.
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 33566778888888887766542211132 2223334456667766778887777664311 001 1 1112222
Q ss_pred HHHHccCC-HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003449 567 HAYANGRE-IDQMLALSEEIYSGIIEP-HAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQM 644 (819)
Q Consensus 567 ~~~~~~~~-~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 644 (819)
-++...|. -+++...+..++...... .......++..+.-.|+-+-...++..+.+.. ..+..-...+.-++...|+
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 22332332 245566666665532110 11233345666777888887788887776642 1122223334444557788
Q ss_pred hHHHHHHHHHHhhCCCCCCHHH-HH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003449 645 VAKTNEILHFMNDSGFTPSLTT-YN---TLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASR 720 (819)
Q Consensus 645 ~~~A~~~~~~~~~~~~~p~~~~-~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 720 (819)
.+.+..+++.+... .+... |. ++.-+|+..|+.....+++..+... ...++.-...+.-++...|+.+.+.+
T Consensus 540 ~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 540 QELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred hHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 88888888888764 33333 22 3445677889988888899988864 22334444444445555677666777
Q ss_pred HHHHHHHCCCCCCHHHHH--HHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHH
Q 003449 721 IFSEMRDSGLVPDVITYN--TFVASYAADSL-FVEALDVVRYMIKQGCKPNQNTY 772 (819)
Q Consensus 721 ~~~~~~~~g~~p~~~~~~--~l~~~~~~~g~-~~~A~~~~~~~~~~g~~p~~~~~ 772 (819)
+++.+.+.+ |..+-. .++-+....|. ..+|++.+..+.. .+|..+-
T Consensus 616 lv~~L~~~~---d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 616 IVQLLSKSH---NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp HTTTGGGCS---CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred HHHHHHhcC---CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 776665532 343333 33333444444 3788999999975 4554443
No 245
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.06 E-value=0.00032 Score=70.38 Aligned_cols=223 Identities=13% Similarity=0.181 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003449 208 VYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLIS 287 (819)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~ 287 (819)
+.+|..|..++.+.|+..+|++-|-+. -|...|..++.+..+.| .+++....+...++..- +..+=+.|+-
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~-~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG-NWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSS-CCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 457777888887777777776655322 26666777777777777 66766666665554322 3333445566
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHH
Q 003449 288 CCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEE 367 (819)
Q Consensus 288 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 367 (819)
+|++.++..+-++.+ -.||..-...+.+-|...|.++.|.-+|..+. -|.-|...+.+.|++..
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHH
Confidence 666666544322222 12444444555555666666666655554331 13334444555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 003449 368 AMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINK 447 (819)
Q Consensus 368 A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 447 (819)
|.+.-++. -+..||..+-.+|...+.+..|.-.--.++-.. | -...++..|-..|.+++-+.+++.-..
T Consensus 189 AVdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 54432221 234466666666666666655544333333211 0 112234445556666666665555442
Q ss_pred CCCCCCHHHHHHHHHHHHhc
Q 003449 448 CNCKPDIVTWNTLLAVFGQN 467 (819)
Q Consensus 448 ~~~~~~~~~~~~li~~~~~~ 467 (819)
.. ......++.|.-.|++-
T Consensus 258 lE-rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKF 276 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSS
T ss_pred CC-chhHHHHHHHHHHHHhc
Confidence 21 23344444444444443
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.24 E-value=0.57 Score=51.61 Aligned_cols=130 Identities=11% Similarity=0.027 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC------CCC-CCHH-
Q 003449 210 AYTSLITTYASNGR-YREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSA------GVK-PDSY- 280 (819)
Q Consensus 210 ~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~------g~~-p~~~- 280 (819)
.-..++..+...|+ .+.|..+|+++.+....-+......++..+.+.+..--+|.+++.+..+. ... .+..
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34455555555666 57788899888877432222233334444444332233455554444321 111 1111
Q ss_pred ---------HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHH
Q 003449 281 ---------TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREM 340 (819)
Q Consensus 281 ---------~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 340 (819)
....=...|...|+++.|+++.++....- +.+-.+|..|+.+|.+.|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11112344556677777777777776652 334567777777777777777777777665
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.61 E-value=13 Score=38.47 Aligned_cols=190 Identities=11% Similarity=0.067 Sum_probs=114.0
Q ss_pred cCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc
Q 003449 572 GREIDQMLALSEEIYS-----GIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIY----GRR 642 (819)
Q Consensus 572 ~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 642 (819)
.+++++|++.+-.+.+ ............++..+...++++...+.+..+.+..-. -......++..+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 3678888877765543 233455777888889999999999888877766653212 223333443322 222
Q ss_pred CChHH--HHHHHHHHhh--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHH
Q 003449 643 QMVAK--TNEILHFMND--SG-FTP---SLTTYNTLMYMYSRSENFARAEDVLREILAK--GIKPD---IISYNTVIFAY 709 (819)
Q Consensus 643 ~~~~~--A~~~~~~~~~--~~-~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~ 709 (819)
...+. -..+.+.... .| +-- .......|...|...|++.+|.+++..+... +.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22222 1112221111 11 111 1122356777888889999999988888632 22211 45666677888
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 710 CRNGRMKEASRIFSEMRDS----GLVPDV--ITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 710 ~~~g~~~~A~~~~~~~~~~----g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
...+++..|..++.++... ...|+. ..+...+..+...++|.+|...|.++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 8888999998888887531 112222 2455667777788888888888887765
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.87 E-value=2.9 Score=35.60 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCC
Q 003449 768 NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 768 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
+.+.-..++.+|.+.|++++|+.+++.+......+
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~ 155 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTP 155 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCH
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCH
Confidence 34566678889999999999999988876554433
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.85 E-value=18 Score=36.41 Aligned_cols=93 Identities=15% Similarity=0.031 Sum_probs=51.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-----HHhHHHHHHHHHhCCCHHHHHHHHHHHHHC--C--CCCCHhhHHH
Q 003449 284 TLISCCRRGSLHEEAAGVFEEMKLAGFSPD-----KVTYNALLDVYGKCRRPKEAMQVLREMKIN--G--CLPSIVTYNS 354 (819)
Q Consensus 284 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g--~~~~~~~~~~ 354 (819)
.++..|...|++.+|.+++..+.+.--..| ...|..-+..|...+++.++...+...... . ++|.....--
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 456667777788887777777665311111 223445566677777777777777665432 1 2222221111
Q ss_pred H--HHHHH-HcCCHHHHHHHHHHHH
Q 003449 355 L--ISAYA-RDGLLEEAMELKTQMV 376 (819)
Q Consensus 355 l--i~~~~-~~g~~~~A~~~~~~m~ 376 (819)
. ...+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1 12234 5677777777666543
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.28 E-value=3.3 Score=31.56 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 003449 750 FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRI 814 (819)
Q Consensus 750 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l 814 (819)
.-+..+-++.+...++-|++.+..+.+.+|.+.+++--|.++++-+..+-.+. ..+|..+++.+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~-~~iY~~~lqEl 89 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KEIYPYVIQEL 89 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc-hhhHHHHHHHH
Confidence 33555556666655666666666666666666666666666666665443222 23455554433
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.81 E-value=2.2 Score=36.36 Aligned_cols=130 Identities=6% Similarity=0.020 Sum_probs=65.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhC-CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHH
Q 003449 635 MISIYGRRQMVAKTNEILHFMNDS-GFTPSL-------TTYNTLMYMYSRSENFARAEDVLREILAKG--IKPDIISYNT 704 (819)
Q Consensus 635 l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~ 704 (819)
-+..+...|.++.|+-+.+.+... +..++. .++..+.+++...|++.+|...|++.++.. +.-.......
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 344556667777776666654432 112331 234556666777777777777777765321 1101111100
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003449 705 VIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGY 779 (819)
Q Consensus 705 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 779 (819)
+. ....... ......+...-..++.+|.+.+++++|+.+++.+-.+ .-++.+-..|++.|
T Consensus 106 ~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k--~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 106 TG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR--QRTPKINMLLANLY 165 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG--GCCHHHHHHHHHHC
T ss_pred cc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch--hcCHHHHHHHHHHh
Confidence 00 0000000 0012223445556888999999999999988876432 22455555666544
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.69 E-value=3.7 Score=41.64 Aligned_cols=71 Identities=13% Similarity=0.096 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HcCCCCCHHH
Q 003449 700 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMI-----KQGCKPNQNT 771 (819)
Q Consensus 700 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~g~~p~~~~ 771 (819)
.....++..+...|++++|...+..+.... .-+...|..++.+|...|+..+|++.|+++. +.|+.|.+.+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 344556666777788888877777776642 2255677777778888888888887777754 3477776554
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.17 E-value=16 Score=43.24 Aligned_cols=87 Identities=10% Similarity=0.144 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 003449 419 ICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPD----IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNT 494 (819)
Q Consensus 419 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 494 (819)
..-|..++..+.+.+.++.+.+.-....+.....+ ...|..+.+.+...|++++|...+-.+..... -...+..
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 34566677777777777777777665554321112 12577788888888888888888877765533 3556677
Q ss_pred HHHHHHhcCChHH
Q 003449 495 LISAYSRCGSFDQ 507 (819)
Q Consensus 495 l~~~~~~~g~~~~ 507 (819)
|+..+|..|..+.
T Consensus 977 LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 977 FVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHCCHHH
T ss_pred HHHHHHhCCChhh
Confidence 7777777766543
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.10 E-value=4.3 Score=30.97 Aligned_cols=59 Identities=14% Similarity=0.264 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003449 717 EASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIV 776 (819)
Q Consensus 717 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 776 (819)
+..+-++.+....+.|++.+..+.+.+|.+.+++.-|+++++....+ ..+...+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 34444555555555666666666666666666666666666655533 223333444443
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.99 E-value=2.4 Score=39.48 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=31.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 709 YCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 709 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+.+.|.+++|++....-++.... |...-..++..+|-.|+|+.|.+-++.+.+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44556666666666666554222 444555666666666666666666666665
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.16 E-value=5.1 Score=37.35 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=28.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003449 675 SRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 675 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 727 (819)
.+.|++++|++....-++.. +-|...-..++..+|-.|+++.|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44555566665555555542 22455555555556666666666665555554
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.48 E-value=7.2 Score=31.58 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 003449 752 EALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRI 814 (819)
Q Consensus 752 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l 814 (819)
+..+-++.+...++-|++.+....+.+|.+.+|+--|.++++-+..+--+. ..+|..+++.|
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~-~~iY~y~lqEl 132 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc-hhhHHHHHHHH
Confidence 455555666666666777777777777777777777777777665543222 33455555443
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.33 E-value=6.3 Score=39.93 Aligned_cols=71 Identities=11% Similarity=0.050 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 003449 667 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD-----SGLVPDVITYN 738 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~ 738 (819)
...++..+...|+.++|...+..+.... +-+...|..++.+|.+.|+..+|++.|+++.+ .|+.|+..+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3445666777888888888888777652 33677888888888888888888888877654 37788776543
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.19 E-value=18 Score=42.87 Aligned_cols=164 Identities=7% Similarity=-0.037 Sum_probs=78.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 003449 494 TLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGR 573 (819)
Q Consensus 494 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 573 (819)
.++..+...+..+.+.++..... .+....-.+..++...|++++|.+.|.+... ++..+... ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l----------~~ 880 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQ----------FA 880 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCS----------CS
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchh----------hh
Confidence 45556666777776666543322 2444444455677788888888888876532 11111000 00
Q ss_pred CHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHH
Q 003449 574 EIDQMLALSEEIYSGI--IEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDI----PTLNAMISIYGRRQMVAK 647 (819)
Q Consensus 574 ~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~ 647 (819)
.... +..+.... ...-...|..++..+.+.+.++.+.++-+..++.....+. ..|..+...+...|++++
T Consensus 881 ~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 881 VLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp SHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred hhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 0000 01111110 0112334555555566666666666555555442211121 135556666666677777
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 003449 648 TNEILHFMNDSGFTPSLTTYNTLMYMYSRSEN 679 (819)
Q Consensus 648 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 679 (819)
|...+-.+.... --...+..++...+..|.
T Consensus 957 Ay~aL~~~pd~~--~r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 957 AHVALMVLSTTP--LKKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp GGHHHHHHHHSS--SCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCCCHH--HHHHHHHHHHHHHHhCCC
Confidence 766665555432 223344555554444443
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.08 E-value=32 Score=33.39 Aligned_cols=164 Identities=12% Similarity=0.147 Sum_probs=82.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHH
Q 003449 425 LIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVF----KEMKRAGFIPERDTFNTLISAYS 500 (819)
Q Consensus 425 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~~~~~~~~~~~~l~~~~~ 500 (819)
+..-|.+.+++++|++++..- ...+.+.|+...+-++. +.+.+.+++++......++..+.
T Consensus 41 i~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 41 VAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 334455566666666655432 12233344444333332 33344456666666555555555
Q ss_pred hcCChH-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 003449 501 RCGSFD-QAMSIYKRMLE----AG--VTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGR 573 (819)
Q Consensus 501 ~~g~~~-~A~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 573 (819)
....-+ .=..+.+++++ .| ..-+......+...|.+.+++.+|...|- . +-.+....+..++.-+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTS
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhc
Confidence 444211 11222222221 12 33467777788888999999999888772 2 22233355655554443332
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003449 574 EIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKK 622 (819)
Q Consensus 574 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 622 (819)
... +. .......+-.|...+++..|..+++...+
T Consensus 182 ~~~--------------e~-dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 182 ESH--------------TA-PLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp CGG--------------GH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCc--------------cH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 211 11 12222333445667788888777666543
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.24 E-value=8.6 Score=29.16 Aligned_cols=78 Identities=19% Similarity=0.150 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 003449 294 LHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKT 373 (819)
Q Consensus 294 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 373 (819)
..++|.-+-+.+...+. ...+--.-+..+...|++++|..+.+.+ +.||.+.|-.|.. .+.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45666666666655532 1111111133455667777776666555 5666666665543 34566666655555
Q ss_pred HHHHcC
Q 003449 374 QMVEIG 379 (819)
Q Consensus 374 ~m~~~g 379 (819)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 555443
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.45 E-value=38 Score=32.94 Aligned_cols=111 Identities=16% Similarity=0.113 Sum_probs=65.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH----HHHHHcCCCCCHHHHHHHHH
Q 003449 317 YNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELK----TQMVEIGITPDVFTYTTLLS 392 (819)
Q Consensus 317 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~pd~~~~~~l~~ 392 (819)
|.++..-|.+.+++++|++++-.- ...+.+.|+...|-++. +-+.+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344555577888888888876553 23455566666555544 44445577777776666666
Q ss_pred HHHhcCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 003449 393 GFEKAGKDE-SAMKVFEEMR----SAG--CKPNICTFNALIKMHGNRGNFVEMMKVF 442 (819)
Q Consensus 393 ~~~~~g~~~-~A~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 442 (819)
.+.....-+ .-..+.++++ +.| -.-|......+...|.+.+++.+|...|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 665444311 1122333332 112 1235666677778888888888887776
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.34 E-value=8.4 Score=29.16 Aligned_cols=78 Identities=18% Similarity=0.096 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 003449 294 LHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKT 373 (819)
Q Consensus 294 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 373 (819)
..++|.-+-+.+...+. ...+--.-+..+...|++++|..+.+.+ +.||.+.|-.|.. .+.|..+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45666666666655532 1111111133455667777776666555 5666666655543 35566666665555
Q ss_pred HHHHcC
Q 003449 374 QMVEIG 379 (819)
Q Consensus 374 ~m~~~g 379 (819)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555544
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.04 E-value=41 Score=32.42 Aligned_cols=168 Identities=15% Similarity=0.038 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHH----HHHHHHhCCCCCCHHHHHH
Q 003449 209 YAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMA----LVEGMKSAGVKPDSYTFNT 284 (819)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~----~~~~~~~~g~~p~~~~~~~ 284 (819)
..|.++...|.+++++++|++++..-.. .+.+.| ++..|.+ +++-..+.+++++......
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~-Q~~sa~DLa~llvev~~~~~~~~~~~~~~r 97 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAK-QGGSGTDLIFYLLEVYDLAEVKVDDISVAR 97 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTT-CHHHHHHHHHHHHHHHHHTTCCCSHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCC-CcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 4566788889999999999888754321 122333 3433333 3555555677777777777
Q ss_pred HHHHHHcCCCHH-HHHHHHHHH----HHCCC--CCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 003449 285 LISCCRRGSLHE-EAAGVFEEM----KLAGF--SPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLIS 357 (819)
Q Consensus 285 ll~~~~~~g~~~-~A~~~~~~~----~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 357 (819)
++..+.....-+ +=.++.+++ .+.|- .-+......+...|.+.|++.+|+..|-- |..-+...+..++.
T Consensus 98 l~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~ 173 (312)
T 2wpv_A 98 LVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLW 173 (312)
T ss_dssp HHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHH
Confidence 776655432111 112222232 22221 23556677777788888888888776631 11113444444444
Q ss_pred HHHHc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003449 358 AYARD---GLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMR 411 (819)
Q Consensus 358 ~~~~~---g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 411 (819)
-+.+. |...++-- ..-.. +-.|...|+...|..+++...
T Consensus 174 ~w~~~~~~~~~~e~dl--------------f~~Ra-VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 174 DWLCQVDDIEDSTVAE--------------FFSRL-VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHTTCCCHHHHHH--------------HHHHH-HHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcchHHH--------------HHHHH-HHHHHHhcCHHHHHHHHHHHH
Confidence 44443 44333211 11112 223445677888877777654
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=80.43 E-value=19 Score=31.80 Aligned_cols=83 Identities=17% Similarity=0.293 Sum_probs=56.9
Q ss_pred HHHHHHHHC-----CCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHH
Q 003449 685 DVLREILAK-----GIKPDII---SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALD 755 (819)
Q Consensus 685 ~~~~~~~~~-----~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~ 755 (819)
.++++.... ..+-|.. .|..++..+ ..++..++.++|..|...|+--.. ..|...+..+...|++.+|..
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 456655532 1333543 344444332 245577999999999988765443 467788888889999999999
Q ss_pred HHHHHHHcCCCCC
Q 003449 756 VVRYMIKQGCKPN 768 (819)
Q Consensus 756 ~~~~~~~~g~~p~ 768 (819)
+|+..++.+-+|-
T Consensus 137 Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 137 LLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHTTCBSH
T ss_pred HHHHHHHcCCccH
Confidence 9999998877883
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.35 E-value=43 Score=32.25 Aligned_cols=165 Identities=10% Similarity=0.067 Sum_probs=84.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHH
Q 003449 424 ALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGV----FKEMKRAGFIPERDTFNTLISAY 499 (819)
Q Consensus 424 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~~~~~~~~~l~~~~ 499 (819)
++..-|.+.+++++|++++..-. ..+.+.|+...|-++ .+.+.+.++.++......++..+
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33444556666666666654321 223344554444333 33344456666666666666555
Q ss_pred HhcCChH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 003449 500 SRCGSFD-QAMSIYKRML----EAG--VTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANG 572 (819)
Q Consensus 500 ~~~g~~~-~A~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 572 (819)
.....-+ .=.++.++++ +.| ..-+......+...|.+.|++.+|...|-. +-.-+...+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHh
Confidence 4432111 1122333332 221 234778888888889999999888886641 1111344455544444333
Q ss_pred ---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003449 573 ---REIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKK 622 (819)
Q Consensus 573 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 622 (819)
+...++-- .....+-.|.-.++...|..+|+...+
T Consensus 179 ~~~~~~~e~dl---------------f~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 179 VDDIEDSTVAE---------------FFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp TTCCCHHHHHH---------------HHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cCCCCcchHHH---------------HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33222111 112223345567888888888776653
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=80.15 E-value=11 Score=33.29 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003449 661 TPSLTTYNTLMYMYS--RSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD 733 (819)
Q Consensus 661 ~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 733 (819)
.-|..-...-+..-- ..++..++.++|..|..+|+.-. ...|...+..+...|++++|.++|+.-++.+-.|-
T Consensus 74 kND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 445544333333222 25558899999999998876544 67788888999999999999999999999877773
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.75 E-value=11 Score=38.76 Aligned_cols=61 Identities=15% Similarity=0.042 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003449 667 YNTLMYMYSRSENFARAEDVLREILAKG--IKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 727 (819)
...++..|.+.|++++|.+.+.++...- ..--...+..++..+...+++..+...+.++..
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4445555666666666666666655321 111244555555555556666666665555543
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.78 E-value=22 Score=28.84 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=40.0
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003449 644 MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVI 706 (819)
Q Consensus 644 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 706 (819)
+.-+..+-+..+....+.|++.+....+.+|.+.+|+.-|.++|+-+..+ ..+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34455556666666667777777777777777777777777777776643 233344555544
No 270
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=77.26 E-value=63 Score=32.41 Aligned_cols=28 Identities=11% Similarity=0.030 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 490 DTFNTLISAYSRCGSFDQAMSIYKRMLE 517 (819)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 517 (819)
.....|...|.+.|+.++..+++.....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 47 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRP 47 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556677777777777777777665543
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.81 E-value=13 Score=38.12 Aligned_cols=59 Identities=14% Similarity=-0.018 Sum_probs=26.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003449 353 NSLISAYARDGLLEEAMELKTQMVEIGIT--PDVFTYTTLLSGFEKAGKDESAMKVFEEMR 411 (819)
Q Consensus 353 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~--pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 411 (819)
..+...|.+.|++++|.+.|.++...... --...+..+++.+...+++..+...+.++.
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444444444444444444444432111 112234444555555555555555555443
No 272
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=73.41 E-value=1e+02 Score=33.12 Aligned_cols=204 Identities=8% Similarity=-0.055 Sum_probs=109.5
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCCH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003449 572 GREIDQMLALSEEIYSGI-IEPHA--VLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKT 648 (819)
Q Consensus 572 ~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 648 (819)
..+.+.|...+....... ..+.. .....++......+...++...+....... .+.......+....+.|+++.|
T Consensus 227 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 227 RQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 347788888888876433 22211 122233333444453556666666655432 3443344444444567889999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003449 649 NEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS 728 (819)
Q Consensus 649 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 728 (819)
...|+.|..... ....-.--+..++...|+.++|..+|+.+.+. . ..|..+. ..+.|..-. .. . .
T Consensus 305 ~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~-~fYg~lA--a~~Lg~~~~-~~----~--~ 369 (618)
T 1qsa_A 305 NTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R-GFYPMVA--AQRIGEEYE-LK----I--D 369 (618)
T ss_dssp HHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C-SHHHHHH--HHHTTCCCC-CC----C--C
T ss_pred HHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C-ChHHHHH--HHHcCCCCC-CC----C--C
Confidence 888888765321 22333334556777888999999988888742 1 1233221 222232100 00 0 0
Q ss_pred CCCC---CHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 003449 729 GLVP---DVI---TYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNL 795 (819)
Q Consensus 729 g~~p---~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 795 (819)
...+ ... .-...+..+...|...+|...+..+.+. .+..-...++......|..+.++....+.
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~~~ 439 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 0001 000 1123345577888888888888877653 23333445566666778877777665543
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=69.38 E-value=26 Score=29.36 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003449 716 KEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQGCKP 767 (819)
Q Consensus 716 ~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 767 (819)
+++.++|..|...|+--.. ..|...+..+...|++.+|..+++..++.+-+|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4477777777776654333 355666777777778888888887777776666
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=68.83 E-value=26 Score=26.64 Aligned_cols=49 Identities=12% Similarity=-0.042 Sum_probs=23.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003449 709 YCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 709 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
+...|+|++|..+.+.. ..||.+.|.++. -.+.|.-+++...+.++..+
T Consensus 49 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHHHHHhC
Confidence 44455555555544433 245555554443 23555555555555454443
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=65.08 E-value=37 Score=28.89 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003449 716 KEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQ 769 (819)
Q Consensus 716 ~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 769 (819)
+++.++|..|...|+--.. ..|...+..+...|++.+|..+++..++.+-+|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 4467778888877665433 35667777777888888888888888887777743
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=64.59 E-value=56 Score=27.38 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=28.4
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003449 683 AEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP 732 (819)
Q Consensus 683 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 732 (819)
+.++|..|..+|+.-. ...|...+..+...|++++|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5566666665544332 4455555555666666666666666666555554
No 277
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=61.88 E-value=74 Score=27.06 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHH
Q 003449 751 VEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 751 ~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
+++.++|+.|...|+-- -+..|...+..+-..|++.+|.++++..++.+-.+-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 45888999999988877 46677789999999999999999999999988777444
No 278
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=57.10 E-value=74 Score=30.55 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=12.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 003449 739 TFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
..+....+.+++..|..+.+++++
T Consensus 212 ~AM~~a~K~KNy~tAa~fArrLLe 235 (325)
T 3mv2_A 212 VAMSQHFKHKNFLQASYFAGEFLK 235 (325)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 333444555555555555555555
No 279
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=53.89 E-value=71 Score=24.36 Aligned_cols=77 Identities=10% Similarity=0.061 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003449 679 NFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVR 758 (819)
Q Consensus 679 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 758 (819)
.-++|..+-+-+...+. -..++. .-+..+...|+|++|..+.+.. ..||.+.|.++. -.+.|.-+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~-~E~v~l-IR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE-EEAVQL-IRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALC--EYRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHH-HHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHH--HHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHH-HHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 34555555555554432 111111 1123455566666666655443 355655555543 235555556655555
Q ss_pred HHHHc
Q 003449 759 YMIKQ 763 (819)
Q Consensus 759 ~~~~~ 763 (819)
++..+
T Consensus 94 ~la~s 98 (116)
T 2p58_C 94 RLARS 98 (116)
T ss_dssp HHTTC
T ss_pred HHHhC
Confidence 55443
No 280
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=51.67 E-value=37 Score=30.61 Aligned_cols=52 Identities=21% Similarity=0.344 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003449 716 KEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQGCKP 767 (819)
Q Consensus 716 ~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 767 (819)
+++.++|..|...|+--.. ..|...+..+...|++.+|..+|+..++.+-+|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5777888888887765433 356677777888888888888888888877777
No 281
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=49.99 E-value=1.2e+02 Score=25.83 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=28.6
Q ss_pred CCCCHHHHH--HHHHHHHhcCcHHHHHHHHHHhhhcCCC
Q 003449 765 CKPNQNTYN--SIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 765 ~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
.-|-...|. ..+..|...|..++....+..+..++|.
T Consensus 202 ~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 202 HVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp STTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 566544433 4566778899999999999999999885
No 282
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=45.17 E-value=44 Score=31.43 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=7.9
Q ss_pred cCCHHHHHHHHHHHHHCCC
Q 003449 397 AGKDESAMKVFEEMRSAGC 415 (819)
Q Consensus 397 ~g~~~~A~~~~~~~~~~~~ 415 (819)
.|......++++.+.+.|.
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~ 210 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGA 210 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTC
T ss_pred ccccchHHHHHHHHHHcCC
Confidence 3333333344444444443
No 283
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=44.95 E-value=1.2e+02 Score=29.95 Aligned_cols=64 Identities=13% Similarity=0.224 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCC
Q 003449 353 NSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGK--DESAMKVFEEMRSAGCKP 417 (819)
Q Consensus 353 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~ 417 (819)
+.++.-|...|+.++|.+.++++..-.+. .......+..++-+.++ .+...+++..+...|+-.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 55677777778888888888777532111 12334444444444332 344666666666665443
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.19 E-value=1.8e+02 Score=26.62 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003449 384 VFTYTTLLSGFEKAGKDESAMKVFEEM 410 (819)
Q Consensus 384 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 410 (819)
.......+..+.+.|+.++|.++|-+.
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 333444445555556666655555443
No 285
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=40.01 E-value=3.9e+02 Score=28.91 Aligned_cols=42 Identities=33% Similarity=0.271 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH
Q 003449 319 ALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYAR 361 (819)
Q Consensus 319 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 361 (819)
.+|--+.++|++++|.++.++.... ...-...+...+..|+.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 4556667888888888888776432 11112355666666664
No 286
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=39.19 E-value=1.6e+02 Score=33.80 Aligned_cols=126 Identities=10% Similarity=0.095 Sum_probs=70.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003449 670 LMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSL 749 (819)
Q Consensus 670 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 749 (819)
++..+...|.++-|.++..- ++.++..-..++.+|...|++++|...|+++- .|+..+......
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~---------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV---------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------
Confidence 55566677777665543321 23344444566788888888888888887753 233321110000
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 003449 750 FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDR 813 (819)
Q Consensus 750 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 813 (819)
......++... +. -......|.+++..+-+.|-++.++.+.+.+++.-..+++..-..|...
T Consensus 880 ~~~~~~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r 941 (950)
T 4gq2_M 880 LREFQEIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHE 941 (950)
T ss_dssp GHHHHHHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHH
T ss_pred hhhhhhccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHH
Confidence 00111111100 00 0112346778888888999999999999999876555555533344443
No 287
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=39.10 E-value=73 Score=29.79 Aligned_cols=9 Identities=0% Similarity=-0.200 Sum_probs=4.0
Q ss_pred HHHcCCCHH
Q 003449 288 CCRRGSLHE 296 (819)
Q Consensus 288 ~~~~~g~~~ 296 (819)
..++.|+.+
T Consensus 11 ~A~~~g~~~ 19 (285)
T 1wdy_A 11 KAVQNEDVD 19 (285)
T ss_dssp HHHHTTCHH
T ss_pred HHHHcCCHH
Confidence 334445544
No 288
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=38.68 E-value=2.9e+02 Score=27.08 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=18.0
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHH
Q 003449 135 DLLGIVKGLGFHKKTDLALDVFEWF 159 (819)
Q Consensus 135 ~~~~~~~~~~~~~~~~~a~~~~~~~ 159 (819)
....++..|-..++..+|...++.+
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL 80 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDL 80 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 3556677777778888888777765
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=38.04 E-value=1.5e+02 Score=26.69 Aligned_cols=55 Identities=5% Similarity=0.042 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCCCCCH
Q 003449 750 FVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 750 ~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
.+++..+|+.|...|+-- -+..|...+..+-..|++++|..+|+..++.+-.+-.
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 368889999999988877 4667778999999999999999999999988777633
No 290
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=36.43 E-value=1.2e+02 Score=29.01 Aligned_cols=65 Identities=14% Similarity=0.207 Sum_probs=36.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCC
Q 003449 422 FNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGM--DSEVSGVFKEMKRAGFIP 487 (819)
Q Consensus 422 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~ 487 (819)
...++.-|...|+.++|.+.++++..-. .........+..++-+.++ .+....++..+.+.|+-+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~-f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGG-GHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCc-chHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 4566777777888888888888875211 0112333344444444322 344566677776665553
No 291
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=34.71 E-value=1.3e+02 Score=28.78 Aligned_cols=65 Identities=18% Similarity=0.321 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCC
Q 003449 667 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR--MKEASRIFSEMRDSGLVP 732 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~g~~p 732 (819)
...++.-|...|+.++|...++++..-.+. ...+...+..++-+.++ .+...+++..+.+.|+-+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 456777788888999998888887421111 12333334444444322 345667777777666553
No 292
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=34.58 E-value=2.4e+02 Score=24.77 Aligned_cols=92 Identities=10% Similarity=-0.048 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003449 662 PSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFV 741 (819)
Q Consensus 662 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 741 (819)
++..+-...+.++.+.++.+ +...+.++.+ .++...-...+.++...|.. ++...+.++.. .++..+-...+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 34444444444554444422 2333333332 23444444444444444442 23333333332 23444444444
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 003449 742 ASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 742 ~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.++...+. .++...+..+.+
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHhCc-hhHHHHHHHHHh
Confidence 45555444 444455555543
No 293
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=33.88 E-value=2.2e+02 Score=24.12 Aligned_cols=60 Identities=3% Similarity=-0.056 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--CHHHHHHHHH------HHHHcCCHHHHHHHHHHHHH
Q 003449 176 IAVLISMLGKEGKVSVAASLLHGLHKDGFDI--DVYAYTSLIT------TYASNGRYREAVMVFKKMEE 236 (819)
Q Consensus 176 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~g~~~~A~~~~~~m~~ 236 (819)
+...+..+.. |++-+|-++++.+-+....+ ....|..||. ...+.|+...|..+|.+...
T Consensus 36 ~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444444 88888989999887765444 4556777777 23468999999999988765
No 294
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=33.57 E-value=1.1e+02 Score=29.42 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=11.2
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 003449 675 SRSENFARAEDVLREILA 692 (819)
Q Consensus 675 ~~~g~~~~A~~~~~~~~~ 692 (819)
...|++++|+..|+.++.
T Consensus 113 ~t~gKf~eAl~~Fr~iL~ 130 (320)
T 3mkr_B 113 TTVGKFEEAVEKFRSILL 130 (320)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHH
Confidence 455666666666666653
No 295
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=32.50 E-value=54 Score=29.74 Aligned_cols=15 Identities=13% Similarity=-0.146 Sum_probs=6.9
Q ss_pred HHHHHhCCCHHHHHH
Q 003449 321 LDVYGKCRRPKEAMQ 335 (819)
Q Consensus 321 ~~~~~~~g~~~~A~~ 335 (819)
+...++.|+.+-+.-
T Consensus 46 L~~A~~~~~~~~v~~ 60 (240)
T 3eu9_A 46 LHWAAINNRIDLVKY 60 (240)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHHhCCHHHHHH
Confidence 334445555543333
No 296
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=32.46 E-value=2.4e+02 Score=24.12 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=28.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CCH---------------HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003449 708 AYCRNGRMKEASRIFSEMRDSGLV--PDV---------------ITYNTFVASYAADSLFVEALDVVRYMI 761 (819)
Q Consensus 708 ~~~~~g~~~~A~~~~~~~~~~g~~--p~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 761 (819)
+|.+.+++..|...++.+++-.+. ||. ..++.++..+...|+.+||++.+..--
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 455666777777777777653333 111 123444444555555555555555443
No 297
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=32.34 E-value=1e+02 Score=27.86 Aligned_cols=14 Identities=21% Similarity=0.228 Sum_probs=6.2
Q ss_pred HhCCCHHHHHHHHH
Q 003449 325 GKCRRPKEAMQVLR 338 (819)
Q Consensus 325 ~~~g~~~~A~~~~~ 338 (819)
+..|+.+-+..+++
T Consensus 87 ~~~~~~~~~~~Ll~ 100 (241)
T 1k1a_A 87 CEHRSPTCLRALLD 100 (241)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34455444444433
No 298
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.01 E-value=1.4e+02 Score=24.09 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=13.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 003449 353 NSLISAYARDGLLEEAMELKTQMV 376 (819)
Q Consensus 353 ~~li~~~~~~g~~~~A~~~~~~m~ 376 (819)
..++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 344555555555555555555553
No 299
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.84 E-value=2.8e+02 Score=25.23 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003449 523 DLSTYNAVLAALARGGMWEQSEKIFAEMK 551 (819)
Q Consensus 523 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 551 (819)
+.......+..+.+.|+.++|.++|-+..
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 45555555666667777777777665544
No 300
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=30.70 E-value=79 Score=28.67 Aligned_cols=85 Identities=8% Similarity=-0.049 Sum_probs=39.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHh--HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhh--HHHHHHHHHH
Q 003449 286 ISCCRRGSLHEEAAGVFEEMKLAGFSPDKVT--YNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVT--YNSLISAYAR 361 (819)
Q Consensus 286 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~--~~~li~~~~~ 361 (819)
+...++.|+.+.+..+++.+.+.|..++... ..+.+...+..|+.+-+. .+.+.|..++... -.+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR----LLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHH----HHHHcCCCccccCCCCCCHHHHHHH
Confidence 4445566777777777766665554433221 112233444566654333 3334444333211 1122333445
Q ss_pred cCCHHHHHHHHHH
Q 003449 362 DGLLEEAMELKTQ 374 (819)
Q Consensus 362 ~g~~~~A~~~~~~ 374 (819)
.|+.+-+..+++.
T Consensus 89 ~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 89 HRSPTCLRALLDS 101 (241)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc
Confidence 6665544444433
No 301
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=30.37 E-value=5.5e+02 Score=27.76 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 003449 281 TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGK 326 (819)
Q Consensus 281 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 326 (819)
+|- ++--|.|.|++++|.++.++.... +..-...+...+..|+.
T Consensus 155 ~Wa-~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IWA-LIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHH-HHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 443 455688999999999999776543 22122456666666664
No 302
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=29.83 E-value=45 Score=30.26 Aligned_cols=17 Identities=24% Similarity=0.073 Sum_probs=8.7
Q ss_pred HHHHHHHcCCHHHHHHH
Q 003449 214 LITTYASNGRYREAVMV 230 (819)
Q Consensus 214 l~~~~~~~g~~~~A~~~ 230 (819)
.+...++.|+.+-+..+
T Consensus 45 ~L~~A~~~~~~~~v~~L 61 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYY 61 (240)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHH
Confidence 44455566665444333
No 303
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=26.00 E-value=5.4e+02 Score=26.19 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=29.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCC
Q 003449 362 DGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGK-----DESAMKVFEEMRSAGC 415 (819)
Q Consensus 362 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~ 415 (819)
.++.+.|+..+.+|.+.|..|....-..+..+....|. ...|...++.....|.
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 46677777777777776665555444444444444443 2334455555555553
No 304
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=25.71 E-value=1.2e+02 Score=28.58 Aligned_cols=227 Identities=8% Similarity=-0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 003449 264 MALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKIN 343 (819)
Q Consensus 264 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 343 (819)
.++.+-+.+.++......-.+.+...+..|+.+ +.+.+.+.|..++...-.+.+...+..|+.+-+.-+++. ..
T Consensus 13 ~~v~~lL~~~~~~~~d~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga 86 (285)
T 3kea_A 13 KQLKSFLSSKDTFKADVHGHSASYYAIADNNVR----LVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFS--GL 86 (285)
T ss_dssp HHHHHHHHSTTTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHT--TC
T ss_pred HHHHHHHHhCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC--CC
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003449 344 GCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTY---TTLLSGFEKAGKDESAMKVFEEMRSAGCKPNIC 420 (819)
Q Consensus 344 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 420 (819)
.+......-.+.+...+..|+.+-+.-+++. |..++.... .+.+...+..|..+ +.+.+.+.|......
T Consensus 87 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~ 158 (285)
T 3kea_A 87 DDSQFDDKGNTALYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDL 158 (285)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCC
T ss_pred CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccc
Q ss_pred -HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003449 421 -TFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAY 499 (819)
Q Consensus 421 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 499 (819)
.-...+...+..|..+-+.-+++.-.... ..+..-++..+...+..|+ .++.+.+.+.|..++... ..-
T Consensus 159 ~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n-~~~~~g~t~~L~~A~~~~~----~~~v~~Ll~~gad~~~~~-----~~a 228 (285)
T 3kea_A 159 AILLSCIHITIKNGHVDMMILLLDYMTSTN-TNNSLLFIPDIKLAIDNKD----IEMLQALFKYDINIYSAN-----LEN 228 (285)
T ss_dssp STHHHHHHHHHHTTCHHHHHHHHHHHHHTC-TTCCCBCCTTHHHHHHHTC----HHHHHHHTTSCBCSTTTT-----GGG
T ss_pred cCCccHHHHHHHcChHHHHHHHHHcCCCCC-cccCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCCCCC-----hhh
Q ss_pred HhcCChHHHHHHHHH
Q 003449 500 SRCGSFDQAMSIYKR 514 (819)
Q Consensus 500 ~~~g~~~~A~~~~~~ 514 (819)
+..|+.+-+.-+++.
T Consensus 229 ~~~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 229 VLLDDAEIAKMIIEK 243 (285)
T ss_dssp GTTTCHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHc
No 305
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.52 E-value=3.1e+02 Score=23.20 Aligned_cols=52 Identities=6% Similarity=-0.113 Sum_probs=32.7
Q ss_pred hcCChHHHHHHHHHHhhCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 003449 641 RRQMVAKTNEILHFMNDSGFTP--SLTTYNTLMY-M-----YSRSENFARAEDVLREILA 692 (819)
Q Consensus 641 ~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 692 (819)
..|++-+|.++|+..-...-.+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4477888888888777654334 3445555555 2 2346777777777777654
No 306
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.25 E-value=1.6e+02 Score=30.59 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHH-HHHHHHHHhcCChHHHHHHHHHHHH
Q 003449 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGL-VPDV--ITY-NTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
...+|.+++.|...+.++.|.++..+..--.. .++. ..| ..++..+.-.++|.+|.+.+..+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55667777777777777777777776641000 1111 122 2445566667777777777777665
No 307
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=25.01 E-value=2.7e+02 Score=24.41 Aligned_cols=97 Identities=12% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH--cCCCHHHHHHHHHHHHHCCCCCCHHhHHH--HHHHHHhCCC----------------HHHHHHHHH
Q 003449 279 SYTFNTLISCCR--RGSLHEEAAGVFEEMKLAGFSPDKVTYNA--LLDVYGKCRR----------------PKEAMQVLR 338 (819)
Q Consensus 279 ~~~~~~ll~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~----------------~~~A~~~~~ 338 (819)
.+.+..+..++. +.+++.+...+++.++....+.+...-.. +++.+.+-.+ ++.|+.+++
T Consensus 23 Dfyf~~~c~aFR~~r~~dFrq~rdi~eall~~~~~~~a~~~k~i~icQfL~RI~eG~~LD~~Fd~d~~lTPLESAl~v~~ 102 (211)
T 3bqo_A 23 DFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQLRTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWG 102 (211)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHcCCCCCCccCCCCCCChHHHHHHHHH
Q ss_pred HHHHCCCCCCHhhHHHH----HHHHHHcCCHHHHHHHHHHH
Q 003449 339 EMKINGCLPSIVTYNSL----ISAYARDGLLEEAMELKTQM 375 (819)
Q Consensus 339 ~~~~~g~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m 375 (819)
.+...-..+-...-..+ +..|.++|.+++|.++|++.
T Consensus 103 ~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 103 SIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERI 143 (211)
T ss_dssp TSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
No 308
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=24.89 E-value=1.8e+02 Score=20.74 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=13.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 003449 739 TFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.++..+...|++++|...+-+++.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~ 45 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIA 45 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445555555555555555555544
No 309
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.22 E-value=4.6e+02 Score=30.05 Aligned_cols=49 Identities=12% Similarity=0.107 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcC
Q 003449 420 CTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDI----VTWNTLLAVFGQNG 468 (819)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g 468 (819)
.-|..++..+-+.+.++.+.++-+...+.--.-|. ..|..+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 46677778888888888888777777654222222 35666777666544
No 310
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.10 E-value=3e+02 Score=22.84 Aligned_cols=58 Identities=12% Similarity=0.182 Sum_probs=32.0
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003449 199 LHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMG 257 (819)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 257 (819)
+.+.|... ...-..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 18 l~~~g~r~-T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKN-SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--C-HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCC-CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33445442 33444555555555556667777777766655555655555556665555
No 311
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=23.88 E-value=4.9e+02 Score=24.98 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=13.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 003449 704 TVIFAYCRNGRMKEASRIFSEMRDS 728 (819)
Q Consensus 704 ~l~~~~~~~g~~~~A~~~~~~~~~~ 728 (819)
.-+....+.+++..|..+.+++++.
T Consensus 212 ~AM~~a~K~KNy~tAa~fArrLLel 236 (325)
T 3mv2_A 212 VAMSQHFKHKNFLQASYFAGEFLKI 236 (325)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3344455556666666666666553
No 312
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.32 E-value=4.4e+02 Score=27.41 Aligned_cols=64 Identities=11% Similarity=0.138 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCH--HHH-HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003449 630 PTLNAMISIYGRRQMVAKTNEILHFMNDSGF-TPSL--TTY-NTLMYMYSRSENFARAEDVLREILAK 693 (819)
Q Consensus 630 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 693 (819)
..+|.++..|...+.++.|..+..+..--.. .++. ..| -.++..+.-.+++.+|.+.+..+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4467777777777778888777777642100 1111 112 23445566677777777777776654
No 313
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=23.29 E-value=6e+02 Score=25.82 Aligned_cols=54 Identities=11% Similarity=0.091 Sum_probs=32.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcC
Q 003449 711 RNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSL-----FVEALDVVRYMIKQG 764 (819)
Q Consensus 711 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~g 764 (819)
+.++.+.|+.++.+|.+.|..|....-..+..+.-.-|. ..-|...++.....|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 457888899999999888776655444444444444443 333444444444444
No 314
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=23.22 E-value=1.4e+02 Score=25.10 Aligned_cols=84 Identities=8% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003449 352 YNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEK--AGKDESAMKVFEEMRSAGCKPNICTFNALIKMH 429 (819)
Q Consensus 352 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 429 (819)
.+.++.-|...|+.++|.+.++++....+. .......+..++-+ ....+.+..++..+...++-........+...+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl 90 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 90 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Q ss_pred HccCCHH
Q 003449 430 GNRGNFV 436 (819)
Q Consensus 430 ~~~g~~~ 436 (819)
....++.
T Consensus 91 ~~ldDl~ 97 (152)
T 2ion_A 91 NEIPDIN 97 (152)
T ss_dssp HHHHHHH
T ss_pred HhChHhc
No 315
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=22.93 E-value=83 Score=23.08 Aligned_cols=19 Identities=16% Similarity=0.065 Sum_probs=13.5
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 003449 744 YAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~ 762 (819)
+-+.|++++|+.+|...++
T Consensus 29 ~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 29 ADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 4577777777777777665
No 316
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=22.00 E-value=1.2e+02 Score=26.47 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=5.6
Q ss_pred HhcCCHHHHHHHH
Q 003449 395 EKAGKDESAMKVF 407 (819)
Q Consensus 395 ~~~g~~~~A~~~~ 407 (819)
+..|+.+-+..++
T Consensus 80 ~~~~~~~~~~~Ll 92 (201)
T 3hra_A 80 GAQGRTEILAYML 92 (201)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3445544443333
No 317
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.99 E-value=3.1e+02 Score=22.71 Aligned_cols=58 Identities=16% Similarity=0.246 Sum_probs=26.4
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003449 480 MKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGG 538 (819)
Q Consensus 480 m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 538 (819)
+.+.|...+ ..-..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 18 l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344454422 2233344444444445556666666655544445544444444444444
No 318
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.89 E-value=5.2e+02 Score=25.74 Aligned_cols=57 Identities=11% Similarity=0.167 Sum_probs=30.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003449 671 MYMYSRSENFARAEDVLREILAKG----------------IKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~----------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 727 (819)
+.++....+.++|.++++++...- ...-......++..|...|+.++|..++++...
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~ 155 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEK 155 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 444555667777777777664210 011123334445556666666666666666653
No 319
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.73 E-value=45 Score=31.00 Aligned_cols=7 Identities=14% Similarity=-0.140 Sum_probs=3.2
Q ss_pred HhCCCHH
Q 003449 325 GKCRRPK 331 (819)
Q Consensus 325 ~~~g~~~ 331 (819)
+..|+.+
T Consensus 101 ~~~g~~~ 107 (260)
T 3jxi_A 101 IERRCKH 107 (260)
T ss_dssp HHTTCHH
T ss_pred HHcCCHH
Confidence 3445544
No 320
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.37 E-value=4.2e+02 Score=23.30 Aligned_cols=92 Identities=12% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHhC---CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC-----HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003449 320 LLDVYGKC---RRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGL-----LEEAMELKTQMVEIGITPDVFTYTTLL 391 (819)
Q Consensus 320 l~~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~g~~pd~~~~~~l~ 391 (819)
+|+++.|. .+.+.|+-.+-+|.+.| .|.-..-..++-+.-.-|. ...|...++.....|.+--.......+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 95 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVV 95 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 003449 392 SGFEKAGKDESAMKVFEEMRS 412 (819)
Q Consensus 392 ~~~~~~g~~~~A~~~~~~~~~ 412 (819)
-.++..-+...+...++...+
T Consensus 96 iyLA~aPKSNs~y~A~~~A~~ 116 (204)
T 2r9g_A 96 VDLCLSPKSNSAYMALDAALA 116 (204)
T ss_dssp HHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHH
No 321
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=21.32 E-value=93 Score=22.81 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=14.6
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 003449 744 YAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~ 762 (819)
+-+.|++++|+.+|...++
T Consensus 21 ~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 21 ADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 4577888888888877765
No 322
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=21.25 E-value=2.2e+02 Score=29.18 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--------HHHH-HHHHHHHhcCChHHHHHHHHHHHH
Q 003449 701 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV--------ITYN-TFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 701 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--------~~~~-~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
..+.+...|.+.|+.+-+..+++.+...+..|+. .+|. .++..++..+++.+|.+.+..+.+
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 4455667777777777777777777665543222 2343 455556667777777777777665
No 323
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=21.03 E-value=5.1e+02 Score=26.84 Aligned_cols=78 Identities=10% Similarity=0.019 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003449 701 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGY 779 (819)
Q Consensus 701 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 779 (819)
.+..|++.......++.|..+|.++... .|+ ...|+.++......|+.-+|+-+|-+.+-. ..|-+....+|...+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHh--CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCCChhHHHHHHHHH
Confidence 4445556666667788999999998884 444 458888888888888888888888877754 467777777777766
Q ss_pred Hh
Q 003449 780 CK 781 (819)
Q Consensus 780 ~~ 781 (819)
.+
T Consensus 231 ~~ 232 (497)
T 1ya0_A 231 SK 232 (497)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 324
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=20.66 E-value=3.3e+02 Score=21.85 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 003449 668 NTLMYMYSRSENFARAEDVLREI 690 (819)
Q Consensus 668 ~~l~~~~~~~g~~~~A~~~~~~~ 690 (819)
..++.-|...|+.++|...++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34455555566666666666655
No 325
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.28 E-value=2.8e+02 Score=22.77 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=27.6
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003449 480 MKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGG 538 (819)
Q Consensus 480 m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 538 (819)
+.+.|...+.. -..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 34455553332 22333344444445556666666655544445555444444444444
No 326
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.19 E-value=85 Score=21.21 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 003449 331 KEAMQVLREMKINGCLPSIVTYNSLISAY 359 (819)
Q Consensus 331 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 359 (819)
++|.+.|.+|++....+...+|...++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45666666665554444555666666655
No 327
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.10 E-value=3.7e+02 Score=23.08 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=11.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC
Q 003449 393 GFEKAGKDESAMKVFEEMRSAGCKP 417 (819)
Q Consensus 393 ~~~~~g~~~~A~~~~~~~~~~~~~~ 417 (819)
..+..|+.+.-.++.+.+++.|..+
T Consensus 44 ~A~~~~~~~~~~~iv~~Ll~~Gadv 68 (186)
T 3t8k_A 44 DVLRNNNDEARYKISMFLINKGADI 68 (186)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHcCCcchHHHHHHHHHHCCCCC
Confidence 3334444444444555555555443
Done!