Query 003450
Match_columns 819
No_of_seqs 563 out of 3706
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 23:39:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0384 Chromodomain-helicase 100.0 1E-133 2E-138 1126.7 44.1 603 128-762 223-837 (1373)
2 KOG0385 Chromatin remodeling c 100.0 4E-109 8E-114 888.1 43.4 459 277-760 159-623 (971)
3 KOG0389 SNF2 family DNA-depend 100.0 2.6E-90 5.5E-95 745.9 37.9 466 275-763 388-915 (941)
4 PLN03142 Probable chromatin-re 100.0 1.1E-86 2.4E-91 778.9 48.5 461 273-760 158-623 (1033)
5 KOG0387 Transcription-coupled 100.0 5.4E-87 1.2E-91 721.4 39.8 466 276-760 197-682 (923)
6 KOG0388 SNF2 family DNA-depend 100.0 3.5E-87 7.5E-92 708.5 31.1 457 274-759 557-1177(1185)
7 KOG0391 SNF2 family DNA-depend 100.0 6.2E-87 1.3E-91 735.5 33.7 456 280-759 610-1410(1958)
8 KOG0386 Chromatin remodeling c 100.0 2E-87 4.3E-92 739.8 26.0 461 273-758 382-860 (1157)
9 KOG0383 Predicted helicase [Ge 100.0 8.7E-87 1.9E-91 737.4 20.6 624 47-690 43-696 (696)
10 KOG0392 SNF2 family DNA-depend 100.0 8.3E-81 1.8E-85 696.0 33.2 452 284-762 974-1480(1549)
11 KOG0390 DNA repair protein, SN 100.0 3.6E-71 7.9E-76 617.9 39.8 455 284-762 237-733 (776)
12 KOG1002 Nucleotide excision re 100.0 7.4E-66 1.6E-70 527.9 31.9 455 274-760 174-773 (791)
13 KOG4439 RNA polymerase II tran 100.0 2.1E-64 4.5E-69 537.9 32.6 463 275-766 316-888 (901)
14 KOG1015 Transcription regulato 100.0 3.3E-64 7.2E-69 547.3 32.9 451 284-760 667-1301(1567)
15 COG0553 HepA Superfamily II DN 100.0 2.2E-60 4.8E-65 584.7 34.0 457 281-759 334-845 (866)
16 KOG1000 Chromatin remodeling p 100.0 1.7E-57 3.7E-62 467.4 31.2 409 285-756 198-623 (689)
17 PRK04914 ATP-dependent helicas 100.0 2E-54 4.4E-59 506.3 34.3 416 284-759 151-628 (956)
18 KOG1016 Predicted DNA helicase 100.0 7E-53 1.5E-57 450.6 24.3 458 284-763 253-876 (1387)
19 KOG1001 Helicase-like transcri 100.0 1.2E-47 2.5E-52 433.6 23.5 437 288-758 135-672 (674)
20 TIGR00603 rad25 DNA repair hel 100.0 6.2E-40 1.4E-44 371.6 34.2 338 283-743 253-614 (732)
21 PF00176 SNF2_N: SNF2 family N 100.0 2E-40 4.3E-45 355.4 20.2 272 289-586 1-299 (299)
22 PRK13766 Hef nuclease; Provisi 100.0 1.3E-35 2.9E-40 356.7 37.7 431 284-754 14-497 (773)
23 COG1111 MPH1 ERCC4-like helica 100.0 2.8E-34 6E-39 300.6 34.4 428 284-761 14-506 (542)
24 COG1061 SSL2 DNA or RNA helica 100.0 7.3E-32 1.6E-36 299.4 31.0 361 283-747 34-405 (442)
25 PHA02558 uvsW UvsW helicase; P 100.0 4.1E-31 8.9E-36 299.6 31.2 340 283-737 112-456 (501)
26 KOG0298 DEAD box-containing he 100.0 1.7E-30 3.7E-35 295.8 19.3 257 302-585 372-690 (1394)
27 KOG0354 DEAD-box like helicase 100.0 2.9E-26 6.2E-31 254.9 36.6 431 284-758 61-550 (746)
28 PTZ00110 helicase; Provisional 100.0 3E-27 6.5E-32 269.9 29.7 318 285-736 152-484 (545)
29 PRK11776 ATP-dependent RNA hel 100.0 7.3E-27 1.6E-31 264.2 27.3 313 285-736 26-349 (460)
30 PRK10590 ATP-dependent RNA hel 100.0 1E-26 2.2E-31 261.8 28.2 323 285-747 23-361 (456)
31 PLN00206 DEAD-box ATP-dependen 100.0 1E-26 2.2E-31 265.0 28.4 313 285-736 143-475 (518)
32 TIGR00614 recQ_fam ATP-depende 100.0 1.6E-26 3.4E-31 261.0 29.1 308 284-730 10-329 (470)
33 PRK01297 ATP-dependent RNA hel 100.0 2.7E-26 5.8E-31 260.3 29.1 314 285-735 109-441 (475)
34 PRK04837 ATP-dependent RNA hel 100.0 1.2E-26 2.6E-31 259.6 25.5 313 285-735 30-361 (423)
35 KOG0331 ATP-dependent RNA heli 99.9 3.5E-26 7.6E-31 247.0 26.7 312 285-728 113-442 (519)
36 PRK11192 ATP-dependent RNA hel 99.9 6.2E-26 1.3E-30 255.1 29.9 312 284-729 22-347 (434)
37 KOG0330 ATP-dependent RNA heli 99.9 1.1E-26 2.4E-31 234.6 20.8 317 285-739 83-410 (476)
38 PRK11634 ATP-dependent RNA hel 99.9 8.9E-26 1.9E-30 259.9 31.2 311 284-730 27-348 (629)
39 PRK04537 ATP-dependent RNA hel 99.9 6E-26 1.3E-30 260.0 28.6 308 285-729 31-359 (572)
40 PRK11057 ATP-dependent DNA hel 99.9 3.1E-25 6.6E-30 257.0 28.3 303 285-728 25-337 (607)
41 TIGR01389 recQ ATP-dependent D 99.9 7E-25 1.5E-29 255.0 28.9 304 284-728 12-325 (591)
42 PTZ00424 helicase 45; Provisio 99.9 1E-24 2.2E-29 243.4 28.0 315 285-736 50-374 (401)
43 PLN03137 ATP-dependent DNA hel 99.9 1.3E-24 2.8E-29 252.7 27.7 311 284-731 459-784 (1195)
44 TIGR00643 recG ATP-dependent D 99.9 1.1E-23 2.4E-28 245.1 31.5 307 284-728 234-560 (630)
45 TIGR00580 mfd transcription-re 99.9 1.2E-23 2.7E-28 248.9 32.1 308 284-735 450-769 (926)
46 PRK10917 ATP-dependent DNA hel 99.9 2E-23 4.4E-28 244.4 31.7 305 284-728 260-583 (681)
47 KOG1123 RNA polymerase II tran 99.9 1.3E-24 2.9E-29 225.1 19.0 339 281-740 298-657 (776)
48 TIGR03817 DECH_helic helicase/ 99.9 2.4E-23 5.2E-28 244.6 30.8 330 285-744 36-394 (742)
49 COG0513 SrmB Superfamily II DN 99.9 1.7E-23 3.6E-28 236.8 28.4 329 284-749 50-392 (513)
50 PRK11448 hsdR type I restricti 99.9 2.3E-23 5.1E-28 251.0 28.8 358 283-733 411-815 (1123)
51 PRK13767 ATP-dependent helicas 99.9 6.7E-23 1.5E-27 245.7 28.7 324 284-731 31-395 (876)
52 PRK10689 transcription-repair 99.9 1.4E-22 3E-27 245.2 29.3 302 284-727 599-912 (1147)
53 KOG0328 Predicted ATP-dependen 99.9 2.9E-23 6.3E-28 200.9 18.3 315 285-737 49-374 (400)
54 KOG0345 ATP-dependent RNA heli 99.9 1.1E-21 2.3E-26 203.2 23.4 313 284-732 27-362 (567)
55 KOG0350 DEAD-box ATP-dependent 99.9 3.8E-22 8.3E-27 207.7 18.6 365 285-746 159-548 (620)
56 PRK02362 ski2-like helicase; P 99.9 1E-21 2.2E-26 233.6 24.4 319 285-735 23-396 (737)
57 KOG0342 ATP-dependent RNA heli 99.9 5.7E-22 1.2E-26 206.8 17.0 310 285-726 104-429 (543)
58 TIGR03714 secA2 accessory Sec 99.9 9.9E-21 2.1E-25 215.6 25.8 387 285-728 68-531 (762)
59 KOG0335 ATP-dependent RNA heli 99.9 5.4E-21 1.2E-25 203.3 21.6 311 284-731 95-441 (482)
60 TIGR01587 cas3_core CRISPR-ass 99.9 2.6E-20 5.6E-25 204.5 27.9 327 307-749 2-354 (358)
61 PRK01172 ski2-like helicase; P 99.9 7.2E-21 1.6E-25 224.9 24.7 304 284-726 21-368 (674)
62 TIGR02621 cas3_GSU0051 CRISPR- 99.9 1.2E-20 2.5E-25 217.2 25.1 313 283-732 13-390 (844)
63 PRK00254 ski2-like helicase; P 99.9 3.1E-20 6.7E-25 220.4 26.9 317 284-737 22-389 (720)
64 KOG0333 U5 snRNP-like RNA heli 99.9 1.1E-20 2.3E-25 198.0 19.7 338 285-735 267-623 (673)
65 KOG0343 RNA Helicase [RNA proc 99.9 4.2E-20 9.2E-25 194.4 23.7 325 285-750 91-435 (758)
66 COG1200 RecG RecG-like helicas 99.9 9.9E-20 2.1E-24 200.1 27.1 304 284-726 261-583 (677)
67 PRK09200 preprotein translocas 99.9 1.8E-19 4E-24 207.4 29.2 118 605-727 409-534 (790)
68 KOG0338 ATP-dependent RNA heli 99.9 2.3E-20 5.1E-25 194.6 19.7 320 285-743 203-538 (691)
69 KOG0340 ATP-dependent RNA heli 99.9 2.1E-19 4.5E-24 180.1 25.1 307 285-726 29-353 (442)
70 COG1201 Lhr Lhr-like helicases 99.9 7.9E-20 1.7E-24 209.2 25.0 323 284-743 21-367 (814)
71 TIGR00963 secA preprotein tran 99.8 1.6E-20 3.4E-25 212.5 18.8 119 606-729 387-512 (745)
72 PRK12898 secA preprotein trans 99.8 4.3E-19 9.4E-24 200.0 29.2 131 606-746 455-593 (656)
73 COG0514 RecQ Superfamily II DN 99.8 1.4E-19 2.9E-24 200.0 24.4 304 284-729 16-332 (590)
74 KOG4284 DEAD box protein [Tran 99.8 2.6E-20 5.6E-25 198.9 17.8 311 286-725 48-370 (980)
75 TIGR00348 hsdR type I site-spe 99.8 3E-19 6.6E-24 208.2 27.8 361 284-734 237-649 (667)
76 COG4096 HsdR Type I site-speci 99.8 4.3E-20 9.2E-25 205.2 19.5 347 281-733 161-545 (875)
77 KOG0348 ATP-dependent RNA heli 99.8 2.2E-19 4.7E-24 188.5 23.7 335 285-730 159-550 (708)
78 PHA02653 RNA helicase NPH-II; 99.8 3.1E-19 6.7E-24 204.7 25.8 321 283-738 158-516 (675)
79 KOG0341 DEAD-box protein abstr 99.8 8.6E-21 1.9E-25 191.2 11.2 341 265-744 166-536 (610)
80 KOG0339 ATP-dependent RNA heli 99.8 1.1E-18 2.3E-23 182.0 20.7 319 285-739 245-578 (731)
81 PRK09401 reverse gyrase; Revie 99.8 3.3E-18 7.2E-23 207.9 28.5 292 283-722 78-432 (1176)
82 KOG0332 ATP-dependent RNA heli 99.8 1E-18 2.2E-23 176.1 17.9 325 267-725 88-434 (477)
83 KOG0326 ATP-dependent RNA heli 99.8 1.6E-19 3.5E-24 178.0 11.0 303 285-725 107-420 (459)
84 TIGR03158 cas3_cyano CRISPR-as 99.8 1.3E-17 2.7E-22 181.3 26.6 85 623-719 271-357 (357)
85 KOG0336 ATP-dependent RNA heli 99.8 2.7E-18 5.9E-23 174.5 19.5 316 285-736 242-572 (629)
86 PRK09751 putative ATP-dependen 99.8 4.1E-18 8.9E-23 207.5 24.7 96 623-721 243-371 (1490)
87 PRK05580 primosome assembly pr 99.8 2.2E-17 4.8E-22 192.8 29.6 320 284-733 143-548 (679)
88 COG1197 Mfd Transcription-repa 99.8 2.6E-17 5.7E-22 191.1 29.3 308 284-735 593-912 (1139)
89 COG1205 Distinct helicase fami 99.8 8.8E-18 1.9E-22 198.2 25.3 330 285-745 70-431 (851)
90 KOG0347 RNA helicase [RNA proc 99.8 3.9E-18 8.5E-23 179.7 17.4 341 305-757 220-612 (731)
91 PRK13104 secA preprotein trans 99.8 5.1E-17 1.1E-21 186.7 25.4 120 606-730 426-583 (896)
92 TIGR00595 priA primosomal prot 99.8 9.3E-17 2E-21 180.9 25.9 294 308-733 1-380 (505)
93 COG4889 Predicted helicase [Ge 99.8 6E-18 1.3E-22 186.0 15.4 391 282-726 158-577 (1518)
94 COG1204 Superfamily II helicas 99.8 7E-17 1.5E-21 187.9 23.3 310 285-725 31-397 (766)
95 TIGR01054 rgy reverse gyrase. 99.7 2.1E-16 4.6E-21 192.6 26.8 280 284-706 77-409 (1171)
96 PRK12906 secA preprotein trans 99.7 1.5E-16 3.3E-21 182.0 22.9 118 606-728 422-547 (796)
97 PRK12904 preprotein translocas 99.7 3.2E-16 6.9E-21 180.2 25.2 387 283-730 79-569 (830)
98 KOG0346 RNA helicase [RNA proc 99.7 6E-17 1.3E-21 166.7 16.4 307 288-730 44-406 (569)
99 PRK14701 reverse gyrase; Provi 99.7 3.2E-16 6.8E-21 194.7 25.6 298 284-724 78-446 (1638)
100 TIGR01970 DEAH_box_HrpB ATP-de 99.7 5.3E-16 1.1E-20 182.6 26.2 108 624-737 209-337 (819)
101 COG4098 comFA Superfamily II D 99.7 4.7E-15 1E-19 148.6 28.5 312 281-735 93-415 (441)
102 KOG0344 ATP-dependent RNA heli 99.7 5.4E-17 1.2E-21 173.9 14.7 313 285-727 158-488 (593)
103 COG1202 Superfamily II helicas 99.7 2.4E-16 5.2E-21 167.1 18.5 326 284-747 215-573 (830)
104 PRK09694 helicase Cas3; Provis 99.7 2.2E-15 4.8E-20 177.2 28.3 357 283-724 284-665 (878)
105 PF04851 ResIII: Type III rest 99.7 7E-17 1.5E-21 159.5 12.8 165 284-467 2-183 (184)
106 PRK13107 preprotein translocas 99.7 1.5E-15 3.2E-20 174.1 24.9 387 283-730 80-587 (908)
107 PRK11664 ATP-dependent RNA hel 99.7 1.2E-15 2.7E-20 180.0 24.8 110 623-738 211-341 (812)
108 KOG0334 RNA helicase [RNA proc 99.7 2.4E-16 5.3E-21 179.7 17.5 315 284-735 386-719 (997)
109 KOG0327 Translation initiation 99.7 2.8E-16 6E-21 160.4 15.1 313 285-736 48-370 (397)
110 cd00079 HELICc Helicase superf 99.7 2E-16 4.4E-21 146.8 11.3 120 608-730 12-131 (131)
111 KOG0351 ATP-dependent DNA heli 99.6 6.1E-15 1.3E-19 172.9 17.8 312 284-731 263-589 (941)
112 PRK12900 secA preprotein trans 99.6 5.5E-14 1.2E-18 161.9 25.0 117 606-727 580-704 (1025)
113 KOG0337 ATP-dependent RNA heli 99.6 2E-15 4.4E-20 154.9 11.9 304 285-725 43-359 (529)
114 TIGR00631 uvrb excinuclease AB 99.6 2E-13 4.3E-18 157.7 29.5 126 606-737 424-554 (655)
115 PRK11131 ATP-dependent RNA hel 99.6 3.6E-14 7.7E-19 170.4 23.9 109 623-739 285-414 (1294)
116 KOG0952 DNA/RNA helicase MER3/ 99.6 5E-14 1.1E-18 159.5 22.0 322 285-741 110-496 (1230)
117 PRK12899 secA preprotein trans 99.6 4.5E-13 9.7E-18 154.2 27.0 120 606-730 550-677 (970)
118 PF00271 Helicase_C: Helicase 99.6 2.5E-15 5.5E-20 125.4 6.6 78 642-722 1-78 (78)
119 TIGR01967 DEAH_box_HrpA ATP-de 99.6 1.2E-13 2.7E-18 166.5 21.7 110 623-740 278-408 (1283)
120 PRK05298 excinuclease ABC subu 99.6 2.5E-12 5.4E-17 149.9 30.8 124 607-736 429-557 (652)
121 PRK12326 preprotein translocas 99.5 1.7E-12 3.7E-17 145.7 27.1 389 283-730 76-543 (764)
122 smart00487 DEXDc DEAD-like hel 99.5 5.3E-14 1.1E-18 140.5 13.7 154 284-467 7-171 (201)
123 KOG0353 ATP-dependent DNA heli 99.5 3.9E-13 8.4E-18 135.8 18.6 315 284-732 93-465 (695)
124 cd00046 DEXDc DEAD-like helica 99.5 1.8E-13 3.8E-18 128.4 12.9 136 305-466 1-144 (144)
125 COG1203 CRISPR-associated heli 99.5 1.9E-12 4E-17 153.2 21.8 352 284-749 194-565 (733)
126 PRK13103 secA preprotein trans 99.5 2.9E-12 6.3E-17 147.5 22.2 120 606-730 431-587 (913)
127 KOG0352 ATP-dependent DNA heli 99.5 2.5E-12 5.5E-17 132.2 19.3 318 288-731 23-359 (641)
128 KOG0951 RNA helicase BRR2, DEA 99.4 2.7E-12 5.8E-17 147.5 18.4 73 648-724 607-690 (1674)
129 PRK12903 secA preprotein trans 99.4 2.3E-11 4.9E-16 138.7 25.2 120 606-730 408-535 (925)
130 smart00490 HELICc helicase sup 99.4 3.4E-13 7.4E-18 113.6 7.8 81 639-722 2-82 (82)
131 COG0556 UvrB Helicase subunit 99.4 1.3E-10 2.8E-15 123.7 27.9 131 613-747 432-570 (663)
132 PF00270 DEAD: DEAD/DEAH box h 99.4 1.7E-12 3.8E-17 126.2 12.8 151 288-467 2-163 (169)
133 cd00268 DEADc DEAD-box helicas 99.4 3.7E-12 8.1E-17 128.0 15.4 153 285-467 21-185 (203)
134 PF11496 HDA2-3: Class II hist 99.3 3.7E-11 8E-16 125.1 17.3 216 532-749 4-258 (297)
135 TIGR01407 dinG_rel DnaQ family 99.3 8.4E-11 1.8E-15 142.2 21.0 87 282-369 242-334 (850)
136 KOG0329 ATP-dependent RNA heli 99.3 4.1E-11 8.9E-16 115.4 14.0 149 285-465 64-226 (387)
137 KOG0947 Cytoplasmic exosomal R 99.3 7.3E-11 1.6E-15 132.8 17.9 154 271-466 283-444 (1248)
138 COG1198 PriA Primosomal protei 99.3 5.6E-10 1.2E-14 128.1 24.9 154 284-466 197-359 (730)
139 CHL00122 secA preprotein trans 99.2 1.1E-09 2.4E-14 126.0 24.6 85 606-694 406-491 (870)
140 KOG1513 Nuclear helicase MOP-3 99.2 2.5E-10 5.5E-15 125.6 17.6 241 277-553 257-539 (1300)
141 COG4581 Superfamily II RNA hel 99.2 2.7E-10 5.8E-15 133.5 17.5 156 282-497 116-281 (1041)
142 PF13872 AAA_34: P-loop contai 99.2 2.7E-10 5.7E-15 116.0 14.4 233 280-550 32-302 (303)
143 PRK12902 secA preprotein trans 99.2 2.1E-09 4.5E-14 123.4 22.2 85 606-694 421-506 (939)
144 PRK12901 secA preprotein trans 99.1 3.7E-09 8E-14 122.7 22.6 120 606-730 610-737 (1112)
145 COG1110 Reverse gyrase [DNA re 99.1 8E-09 1.7E-13 118.2 24.9 320 284-705 81-416 (1187)
146 TIGR00596 rad1 DNA repair prot 99.0 9.4E-09 2E-13 120.7 19.4 78 406-483 7-91 (814)
147 KOG0948 Nuclear exosomal RNA h 99.0 4E-09 8.8E-14 116.1 12.4 141 284-466 128-276 (1041)
148 KOG1244 Predicted transcriptio 99.0 2.2E-10 4.9E-15 110.5 2.0 50 50-99 280-332 (336)
149 PRK07246 bifunctional ATP-depe 98.9 4.4E-07 9.6E-12 108.6 29.9 87 280-368 240-330 (820)
150 PRK08074 bifunctional ATP-depe 98.9 1.2E-07 2.6E-12 115.5 24.9 90 280-369 252-347 (928)
151 COG0610 Type I site-specific r 98.9 3.2E-08 6.9E-13 119.7 16.7 139 303-470 272-417 (962)
152 KOG0949 Predicted helicase, DE 98.9 9.4E-08 2E-12 108.5 19.0 162 285-479 511-682 (1330)
153 TIGR00604 rad3 DNA repair heli 98.8 1.8E-07 4E-12 111.2 22.1 72 284-355 9-83 (705)
154 KOG0922 DEAH-box RNA helicase 98.8 2.2E-07 4.8E-12 102.6 20.5 111 626-739 260-393 (674)
155 KOG0349 Putative DEAD-box RNA 98.8 6.9E-08 1.5E-12 100.1 15.4 95 624-721 505-602 (725)
156 PF00385 Chromo: Chromo (CHRro 98.8 6.9E-10 1.5E-14 85.1 0.6 49 193-241 2-54 (55)
157 TIGR03117 cas_csf4 CRISPR-asso 98.8 1.8E-06 3.9E-11 98.9 27.2 79 290-368 2-87 (636)
158 COG1643 HrpA HrpA-like helicas 98.8 1.9E-07 4.2E-12 109.2 19.6 110 624-739 259-390 (845)
159 COG1199 DinG Rad3-related DNA 98.8 2.7E-07 5.9E-12 109.7 21.5 102 622-728 477-611 (654)
160 KOG0920 ATP-dependent RNA heli 98.8 5.5E-07 1.2E-11 105.0 22.2 127 608-740 395-548 (924)
161 KOG0950 DNA polymerase theta/e 98.8 1.2E-07 2.6E-12 108.3 15.4 72 650-724 524-599 (1008)
162 PF02399 Herpes_ori_bp: Origin 98.7 5.3E-07 1.2E-11 103.0 20.0 113 607-730 266-384 (824)
163 KOG0924 mRNA splicing factor A 98.7 4.3E-07 9.3E-12 99.5 16.8 104 648-757 597-721 (1042)
164 KOG0953 Mitochondrial RNA heli 98.7 2.3E-07 5E-12 99.7 14.3 100 622-725 356-465 (700)
165 KOG4299 PHD Zn-finger protein 98.7 6.2E-09 1.3E-13 113.5 1.5 47 51-97 253-304 (613)
166 PRK15483 type III restriction- 98.7 3E-07 6.6E-12 108.0 15.0 143 305-467 60-239 (986)
167 COG0653 SecA Preprotein transl 98.7 4.2E-06 9.2E-11 96.5 23.8 115 605-724 410-535 (822)
168 PF07652 Flavi_DEAD: Flaviviru 98.6 1.1E-07 2.4E-12 86.1 8.7 131 302-467 2-137 (148)
169 PRK11747 dinG ATP-dependent DN 98.6 5.7E-06 1.2E-10 97.8 25.6 87 282-368 22-119 (697)
170 TIGR02562 cas3_yersinia CRISPR 98.5 0.00011 2.3E-09 86.9 30.3 181 287-470 410-638 (1110)
171 COG5034 TNG2 Chromatin remodel 98.5 8.4E-08 1.8E-12 92.8 3.7 53 42-97 212-269 (271)
172 PF00628 PHD: PHD-finger; Int 98.5 4.2E-08 9E-13 73.9 1.1 44 53-96 1-49 (51)
173 smart00488 DEXDc2 DEAD-like he 98.5 9.8E-07 2.1E-11 92.9 11.6 72 284-355 7-84 (289)
174 smart00489 DEXDc3 DEAD-like he 98.5 9.8E-07 2.1E-11 92.9 11.6 72 284-355 7-84 (289)
175 KOG0825 PHD Zn-finger protein 98.5 6.9E-08 1.5E-12 106.2 2.4 49 50-98 214-266 (1134)
176 KOG0923 mRNA splicing factor A 98.5 4.8E-06 1E-10 91.4 16.4 134 625-767 474-639 (902)
177 cd00024 CHROMO Chromatin organ 98.4 8.9E-08 1.9E-12 73.5 1.8 49 193-241 4-54 (55)
178 PF13871 Helicase_C_4: Helicas 98.4 7.6E-07 1.6E-11 90.9 8.9 93 665-760 52-152 (278)
179 KOG4150 Predicted ATP-dependen 98.4 3E-06 6.5E-11 91.1 11.7 117 606-725 507-631 (1034)
180 PF13086 AAA_11: AAA domain; P 98.2 6.3E-06 1.4E-10 84.6 11.1 66 285-354 1-75 (236)
181 smart00298 CHROMO Chromatin or 98.2 3.8E-07 8.3E-12 70.0 1.4 49 193-241 3-52 (55)
182 smart00249 PHD PHD zinc finger 98.2 1E-06 2.3E-11 65.0 3.3 43 53-95 1-47 (47)
183 COG3587 Restriction endonuclea 98.2 0.00027 5.8E-09 80.6 21.9 135 305-466 75-242 (985)
184 KOG1512 PHD Zn-finger protein 98.1 1E-06 2.2E-11 86.1 1.8 46 50-97 313-362 (381)
185 cd04718 BAH_plant_2 BAH, or Br 98.1 1.9E-06 4.1E-11 78.1 2.7 29 72-100 1-29 (148)
186 PF00385 Chromo: Chromo (CHRro 98.0 6.3E-07 1.4E-11 68.6 -0.9 53 101-172 2-54 (55)
187 KOG1973 Chromatin remodeling p 98.0 2.1E-06 4.5E-11 89.0 2.0 50 47-98 215-268 (274)
188 PF07517 SecA_DEAD: SecA DEAD- 97.9 0.0001 2.2E-09 75.7 12.4 122 283-440 75-209 (266)
189 cd00024 CHROMO Chromatin organ 97.9 5.4E-06 1.2E-10 63.5 2.0 51 101-172 4-54 (55)
190 KOG0926 DEAH-box RNA helicase 97.9 6.2E-05 1.3E-09 84.5 10.9 65 668-735 621-703 (1172)
191 KOG0925 mRNA splicing factor A 97.9 0.0001 2.2E-09 78.5 11.7 62 679-742 315-393 (699)
192 PRK10536 hypothetical protein; 97.8 0.00014 3E-09 73.5 10.8 150 286-470 60-216 (262)
193 KOG0957 PHD finger protein [Ge 97.8 8.6E-06 1.9E-10 85.8 2.0 48 49-96 542-596 (707)
194 PF02562 PhoH: PhoH-like prote 97.7 0.00022 4.8E-09 70.2 10.6 154 286-470 5-159 (205)
195 KOG1802 RNA helicase nonsense 97.7 0.00013 2.9E-09 80.4 8.8 79 284-368 409-488 (935)
196 KOG2748 Uncharacterized conser 97.4 0.00011 2.4E-09 74.7 4.1 50 192-242 11-60 (369)
197 KOG4443 Putative transcription 97.4 6.5E-05 1.4E-09 82.8 2.2 49 49-97 66-117 (694)
198 PF13604 AAA_30: AAA domain; P 97.4 0.0014 3E-08 65.0 11.3 58 285-345 1-58 (196)
199 PRK14873 primosome assembly pr 97.4 0.00097 2.1E-08 77.8 11.3 126 313-466 169-303 (665)
200 KOG2748 Uncharacterized conser 97.4 3.5E-05 7.6E-10 78.3 -0.5 24 131-154 26-49 (369)
201 smart00298 CHROMO Chromatin or 97.4 0.00012 2.6E-09 56.0 2.5 36 131-173 18-53 (55)
202 KOG4323 Polycomb-like PHD Zn-f 97.3 6.9E-05 1.5E-09 80.8 1.3 50 52-101 169-227 (464)
203 KOG1245 Chromatin remodeling c 97.3 4.3E-05 9.3E-10 94.7 -0.4 52 48-99 1105-1159(1404)
204 PF09848 DUF2075: Uncharacteri 97.3 0.0011 2.3E-08 72.5 9.5 48 307-354 4-53 (352)
205 PF13401 AAA_22: AAA domain; P 97.2 0.00022 4.7E-09 65.7 3.1 35 430-466 89-125 (131)
206 KOG1911 Heterochromatin-associ 97.2 0.00039 8.5E-09 72.5 4.9 57 189-245 46-102 (270)
207 TIGR00376 DNA helicase, putati 97.1 0.0018 3.8E-08 75.9 9.7 75 284-364 156-231 (637)
208 KOG0955 PHD finger protein BR1 97.1 0.00032 6.9E-09 83.6 3.3 50 49-100 217-271 (1051)
209 KOG1803 DNA helicase [Replicat 97.1 0.00074 1.6E-08 74.6 5.5 64 284-351 184-248 (649)
210 COG5141 PHD zinc finger-contai 97.0 0.00025 5.5E-09 75.0 1.6 61 49-114 191-256 (669)
211 PF13307 Helicase_C_2: Helicas 97.0 0.0015 3.3E-08 62.9 6.6 81 622-707 7-93 (167)
212 KOG0954 PHD finger protein [Ge 96.9 0.00033 7.1E-09 78.0 1.4 48 49-98 269-321 (893)
213 KOG1473 Nucleosome remodeling 96.9 0.0006 1.3E-08 79.3 3.4 47 51-97 344-390 (1414)
214 KOG1131 RNA polymerase II tran 96.9 0.0015 3.3E-08 70.4 5.8 77 278-354 9-89 (755)
215 TIGR01448 recD_rel helicase, p 96.7 0.011 2.4E-07 70.5 12.5 64 283-350 321-385 (720)
216 PF13831 PHD_2: PHD-finger; PD 96.6 0.00041 8.8E-09 47.2 -0.4 34 61-96 2-36 (36)
217 TIGR01447 recD exodeoxyribonuc 96.6 0.0096 2.1E-07 68.9 10.3 55 288-346 148-206 (586)
218 PLN03025 replication factor C 96.5 0.035 7.7E-07 59.7 13.6 42 290-331 18-61 (319)
219 KOG0951 RNA helicase BRR2, DEA 96.5 0.0031 6.8E-08 74.8 5.4 110 301-445 1156-1270(1674)
220 PRK04296 thymidine kinase; Pro 96.4 0.0077 1.7E-07 59.4 7.2 34 307-341 5-38 (190)
221 cd00009 AAA The AAA+ (ATPases 96.4 0.027 5.9E-07 52.3 10.7 40 304-344 19-58 (151)
222 PRK10875 recD exonuclease V su 96.4 0.012 2.6E-07 68.3 9.4 58 286-347 153-213 (615)
223 KOG0956 PHD finger protein AF1 96.3 0.0017 3.6E-08 71.9 1.3 43 53-97 7-56 (900)
224 PF12340 DUF3638: Protein of u 96.2 0.0094 2E-07 59.3 6.2 74 282-356 20-93 (229)
225 PRK06526 transposase; Provisio 96.1 0.012 2.7E-07 60.6 6.7 47 302-353 96-142 (254)
226 PRK14956 DNA polymerase III su 96.0 0.05 1.1E-06 60.6 11.4 43 289-331 22-67 (484)
227 PRK08181 transposase; Validate 95.9 0.052 1.1E-06 56.4 10.5 54 286-340 88-141 (269)
228 TIGR02881 spore_V_K stage V sp 95.9 0.016 3.4E-07 60.4 6.8 26 305-330 43-68 (261)
229 COG1875 NYN ribonuclease and A 95.9 0.04 8.6E-07 57.8 9.3 69 275-345 217-288 (436)
230 KOG1133 Helicase of the DEAD s 95.9 0.36 7.9E-06 54.7 17.0 81 626-707 631-721 (821)
231 smart00382 AAA ATPases associa 95.8 0.03 6.5E-07 51.6 7.7 44 304-348 2-45 (148)
232 COG3421 Uncharacterized protei 95.7 0.0063 1.4E-07 67.1 2.8 38 310-347 3-41 (812)
233 PRK07003 DNA polymerase III su 95.7 0.11 2.5E-06 60.5 13.0 42 290-331 21-65 (830)
234 PRK12402 replication factor C 95.7 0.067 1.4E-06 58.1 10.8 41 292-332 22-64 (337)
235 PRK09112 DNA polymerase III su 95.7 0.11 2.5E-06 56.2 12.2 42 290-331 28-72 (351)
236 KOG0991 Replication factor C, 95.6 0.19 4.2E-06 49.4 12.0 28 303-330 47-74 (333)
237 PRK12723 flagellar biosynthesi 95.6 0.13 2.9E-06 56.2 12.2 56 428-483 254-314 (388)
238 TIGR03015 pepcterm_ATPase puta 95.5 0.078 1.7E-06 55.5 10.1 43 287-329 25-68 (269)
239 PRK05703 flhF flagellar biosyn 95.5 0.16 3.5E-06 56.5 12.9 56 428-483 299-359 (424)
240 PRK14949 DNA polymerase III su 95.4 0.12 2.6E-06 61.4 11.9 42 290-331 21-65 (944)
241 PRK14958 DNA polymerase III su 95.4 0.12 2.7E-06 58.9 11.9 42 290-331 21-65 (509)
242 PRK05707 DNA polymerase III su 95.4 0.13 2.9E-06 55.2 11.3 47 285-331 3-49 (328)
243 KOG1132 Helicase of the DEAD s 95.1 0.053 1.1E-06 62.9 7.7 46 284-329 20-69 (945)
244 PRK12323 DNA polymerase III su 95.1 0.17 3.7E-06 58.2 11.6 39 292-330 23-64 (700)
245 TIGR02880 cbbX_cfxQ probable R 95.1 0.032 6.9E-07 58.8 5.6 29 304-332 58-86 (284)
246 PRK07940 DNA polymerase III su 95.1 0.14 3.1E-06 56.3 10.6 27 305-331 37-63 (394)
247 PRK14960 DNA polymerase III su 95.0 0.16 3.5E-06 58.5 11.1 41 290-330 20-63 (702)
248 TIGR03420 DnaA_homol_Hda DnaA 95.0 0.13 2.8E-06 52.2 9.6 40 292-331 24-65 (226)
249 CHL00181 cbbX CbbX; Provisiona 95.0 0.04 8.6E-07 58.1 5.8 27 305-331 60-86 (287)
250 PF13177 DNA_pol3_delta2: DNA 94.9 0.3 6.5E-06 46.7 11.3 44 290-333 2-48 (162)
251 KOG0989 Replication factor C, 94.9 0.1 2.2E-06 53.7 8.2 42 289-330 40-83 (346)
252 PRK06645 DNA polymerase III su 94.8 0.2 4.3E-06 56.9 11.2 43 289-331 25-70 (507)
253 PRK06835 DNA replication prote 94.8 0.24 5.2E-06 53.1 11.3 56 284-340 159-218 (329)
254 PRK11889 flhF flagellar biosyn 94.8 0.21 4.5E-06 54.1 10.6 45 305-350 242-290 (436)
255 PRK07994 DNA polymerase III su 94.8 0.2 4.3E-06 58.3 11.4 42 290-331 21-65 (647)
256 PF13245 AAA_19: Part of AAA d 94.7 0.079 1.7E-06 43.3 5.8 49 304-352 10-62 (76)
257 COG0553 HepA Superfamily II DN 94.7 0.011 2.4E-07 73.3 0.9 179 285-488 84-289 (866)
258 PRK08084 DNA replication initi 94.6 0.23 4.9E-06 50.8 10.2 28 303-330 44-71 (235)
259 smart00492 HELICc3 helicase su 94.6 0.19 4.2E-06 46.7 8.8 47 658-706 31-79 (141)
260 PRK14961 DNA polymerase III su 94.5 0.31 6.7E-06 53.5 11.7 42 289-330 20-64 (363)
261 smart00491 HELICc2 helicase su 94.4 0.17 3.8E-06 47.0 8.0 44 661-706 31-80 (142)
262 PRK14957 DNA polymerase III su 94.4 0.3 6.4E-06 55.9 11.4 41 290-330 21-64 (546)
263 PRK14952 DNA polymerase III su 94.4 0.41 8.9E-06 55.4 12.7 41 290-330 18-61 (584)
264 PRK00440 rfc replication facto 94.4 0.58 1.3E-05 50.3 13.4 42 290-331 22-65 (319)
265 PRK08116 hypothetical protein; 94.4 0.27 5.8E-06 51.3 10.2 44 304-348 114-157 (268)
266 PRK08727 hypothetical protein; 94.3 0.21 4.5E-06 51.1 9.1 28 305-332 42-69 (233)
267 PF13173 AAA_14: AAA domain 94.3 0.3 6.4E-06 44.6 9.3 26 304-329 2-27 (128)
268 TIGR02768 TraA_Ti Ti-type conj 94.3 0.31 6.8E-06 58.5 11.9 60 283-346 350-409 (744)
269 PRK14964 DNA polymerase III su 94.3 0.48 1E-05 53.5 12.5 41 291-331 19-62 (491)
270 KOG0383 Predicted helicase [Ge 94.2 0.02 4.4E-07 66.0 1.6 71 50-152 176-246 (696)
271 PRK09111 DNA polymerase III su 94.2 0.43 9.4E-06 55.5 12.3 42 290-331 29-73 (598)
272 PRK14974 cell division protein 94.2 0.25 5.4E-06 53.0 9.6 48 305-353 141-192 (336)
273 PF00448 SRP54: SRP54-type pro 94.2 0.11 2.3E-06 51.4 6.4 34 307-341 4-37 (196)
274 PF05876 Terminase_GpA: Phage 94.1 0.073 1.6E-06 61.5 5.9 168 284-478 15-191 (557)
275 PRK13889 conjugal transfer rel 94.1 0.31 6.7E-06 59.6 11.2 60 283-346 344-403 (988)
276 PRK08769 DNA polymerase III su 94.0 0.61 1.3E-05 49.7 12.2 48 285-332 4-54 (319)
277 PRK08451 DNA polymerase III su 94.0 0.4 8.6E-06 54.7 11.3 42 290-331 19-63 (535)
278 PRK14962 DNA polymerase III su 94.0 0.38 8.2E-06 54.4 11.1 38 293-330 22-62 (472)
279 PRK14963 DNA polymerase III su 93.9 0.46 9.9E-06 54.2 11.5 42 290-331 19-63 (504)
280 PRK14955 DNA polymerase III su 93.9 0.33 7.2E-06 53.9 10.3 42 290-331 21-65 (397)
281 TIGR02928 orc1/cdc6 family rep 93.9 0.27 5.9E-06 54.1 9.6 44 286-329 19-65 (365)
282 PRK14951 DNA polymerase III su 93.8 0.5 1.1E-05 55.0 11.7 42 290-331 21-65 (618)
283 PRK08058 DNA polymerase III su 93.7 0.45 9.7E-06 51.4 10.6 43 289-331 10-55 (329)
284 PRK07471 DNA polymerase III su 93.6 0.6 1.3E-05 51.0 11.4 44 289-332 23-69 (365)
285 KOG1805 DNA replication helica 93.5 0.26 5.7E-06 58.0 8.8 160 285-467 669-830 (1100)
286 PHA02544 44 clamp loader, smal 93.5 0.63 1.4E-05 50.0 11.5 41 428-468 100-142 (316)
287 PRK06871 DNA polymerase III su 93.4 0.7 1.5E-05 49.4 11.4 47 286-332 3-52 (325)
288 PRK14722 flhF flagellar biosyn 93.4 0.77 1.7E-05 49.9 11.6 41 302-342 135-176 (374)
289 PRK00149 dnaA chromosomal repl 93.3 0.28 6E-06 55.6 8.7 41 305-345 149-190 (450)
290 COG1484 DnaC DNA replication p 93.3 0.25 5.3E-06 51.1 7.5 66 287-353 88-153 (254)
291 PF06862 DUF1253: Protein of u 93.2 1.2 2.6E-05 49.3 12.8 133 609-745 282-422 (442)
292 PRK08691 DNA polymerase III su 93.2 0.57 1.2E-05 54.6 10.8 42 290-331 21-65 (709)
293 PRK06893 DNA replication initi 93.1 0.67 1.5E-05 47.2 10.3 27 306-332 41-67 (229)
294 PRK05642 DNA replication initi 93.0 0.68 1.5E-05 47.3 10.2 35 305-340 46-80 (234)
295 KOG1911 Heterochromatin-associ 93.0 0.048 1E-06 57.0 1.7 25 131-155 64-89 (270)
296 PRK14950 DNA polymerase III su 92.9 0.96 2.1E-05 52.9 12.5 42 289-330 20-64 (585)
297 KOG0957 PHD finger protein [Ge 92.9 0.051 1.1E-06 58.2 1.8 49 50-98 118-179 (707)
298 TIGR00362 DnaA chromosomal rep 92.9 0.39 8.4E-06 53.6 9.0 35 306-340 138-173 (405)
299 PRK07764 DNA polymerase III su 92.8 0.96 2.1E-05 54.6 12.5 42 290-331 20-64 (824)
300 PRK14948 DNA polymerase III su 92.8 0.85 1.9E-05 53.4 11.7 43 289-331 20-65 (620)
301 PRK06647 DNA polymerase III su 92.7 0.64 1.4E-05 53.8 10.5 42 290-331 21-65 (563)
302 PRK14969 DNA polymerase III su 92.7 0.88 1.9E-05 52.4 11.6 41 290-330 21-64 (527)
303 PRK14087 dnaA chromosomal repl 92.6 0.61 1.3E-05 52.5 10.0 46 305-350 142-188 (450)
304 PF15446 zf-PHD-like: PHD/FYVE 92.6 0.14 3E-06 47.5 3.9 34 63-96 124-175 (175)
305 COG1419 FlhF Flagellar GTP-bin 92.4 1.3 2.8E-05 48.0 11.5 57 429-485 282-342 (407)
306 COG2256 MGS1 ATPase related to 92.4 0.48 1E-05 50.7 8.1 24 304-327 48-71 (436)
307 PF00580 UvrD-helicase: UvrD/R 92.4 0.2 4.3E-06 53.7 5.6 63 286-354 1-67 (315)
308 PF01695 IstB_IS21: IstB-like 92.4 0.14 3.1E-06 49.7 4.0 39 301-340 44-82 (178)
309 TIGR03345 VI_ClpV1 type VI sec 92.4 0.7 1.5E-05 56.4 10.7 41 290-330 192-234 (852)
310 PF05621 TniB: Bacterial TniB 92.3 0.93 2E-05 47.3 10.0 45 422-466 139-189 (302)
311 PRK14953 DNA polymerase III su 92.3 1.2 2.6E-05 50.6 11.9 42 289-330 20-64 (486)
312 COG3267 ExeA Type II secretory 92.3 0.6 1.3E-05 47.0 8.1 60 293-354 39-105 (269)
313 KOG4443 Putative transcription 92.2 0.049 1.1E-06 60.8 0.6 96 50-150 17-127 (694)
314 PF15446 zf-PHD-like: PHD/FYVE 92.1 0.071 1.5E-06 49.3 1.5 46 53-98 1-60 (175)
315 PRK14959 DNA polymerase III su 92.1 0.99 2.1E-05 52.3 10.8 38 293-330 24-64 (624)
316 PF05496 RuvB_N: Holliday junc 92.1 0.48 1E-05 47.1 7.2 24 305-328 51-74 (233)
317 PHA02533 17 large terminase pr 92.0 0.91 2E-05 52.1 10.5 55 284-342 58-113 (534)
318 PRK06090 DNA polymerase III su 92.0 1.4 3E-05 47.0 11.2 48 285-332 3-53 (319)
319 cd01121 Sms Sms (bacterial rad 92.0 0.41 8.8E-06 52.3 7.3 53 302-355 80-132 (372)
320 KOG4299 PHD Zn-finger protein 91.9 0.086 1.9E-06 58.9 2.0 47 51-97 47-94 (613)
321 PRK04195 replication factor C 91.8 1.7 3.7E-05 49.7 12.6 25 304-328 39-63 (482)
322 PRK00411 cdc6 cell division co 91.8 1.2 2.5E-05 49.6 11.1 46 287-332 35-83 (394)
323 PRK14965 DNA polymerase III su 91.8 1.7 3.6E-05 50.7 12.6 42 290-331 21-65 (576)
324 PF00004 AAA: ATPase family as 91.7 0.5 1.1E-05 43.0 6.8 35 307-345 1-35 (132)
325 PRK14088 dnaA chromosomal repl 91.7 0.6 1.3E-05 52.5 8.5 37 305-341 131-168 (440)
326 PF14446 Prok-RING_1: Prokaryo 91.6 0.097 2.1E-06 38.8 1.4 30 51-80 5-38 (54)
327 PRK06964 DNA polymerase III su 91.6 1.6 3.4E-05 47.1 11.1 47 286-332 2-49 (342)
328 PRK07133 DNA polymerase III su 91.6 1.2 2.7E-05 52.4 11.0 42 290-331 23-67 (725)
329 PHA03368 DNA packaging termina 91.4 2.9 6.2E-05 48.3 13.3 129 303-465 253-389 (738)
330 PRK13342 recombination factor 91.4 1 2.2E-05 50.4 10.0 24 305-328 37-60 (413)
331 PRK07993 DNA polymerase III su 91.4 1.4 3E-05 47.6 10.5 47 285-331 2-51 (334)
332 PRK05563 DNA polymerase III su 91.4 2.5 5.3E-05 49.1 13.3 26 306-331 40-65 (559)
333 PRK12422 chromosomal replicati 91.3 0.73 1.6E-05 51.8 8.7 36 305-341 142-177 (445)
334 COG1435 Tdk Thymidine kinase [ 91.3 0.35 7.5E-06 46.7 5.2 36 307-343 7-42 (201)
335 PRK14086 dnaA chromosomal repl 91.3 0.9 2E-05 52.4 9.4 43 306-348 316-359 (617)
336 PRK05896 DNA polymerase III su 91.2 2.3 5E-05 49.1 12.6 43 290-332 21-66 (605)
337 TIGR00678 holB DNA polymerase 91.0 2.9 6.4E-05 40.9 11.7 27 305-331 15-41 (188)
338 PRK12727 flagellar biosynthesi 91.0 2.6 5.6E-05 47.7 12.3 39 302-340 348-387 (559)
339 KOG0952 DNA/RNA helicase MER3/ 90.7 0.29 6.3E-06 58.0 4.8 111 302-443 941-1061(1230)
340 COG1198 PriA Primosomal protei 90.6 1.2 2.7E-05 52.4 9.9 111 536-687 195-306 (730)
341 PRK11054 helD DNA helicase IV; 90.6 1 2.3E-05 53.4 9.4 68 284-357 195-266 (684)
342 PTZ00293 thymidine kinase; Pro 90.6 0.48 1E-05 46.9 5.6 36 307-343 7-42 (211)
343 PRK06731 flhF flagellar biosyn 90.5 2 4.4E-05 44.6 10.4 49 303-352 74-126 (270)
344 COG1200 RecG RecG-like helicas 90.4 3.8 8.3E-05 47.2 13.1 127 535-701 258-390 (677)
345 COG0593 DnaA ATPase involved i 90.4 1.4 3E-05 48.2 9.5 40 428-467 175-220 (408)
346 PRK13826 Dtr system oriT relax 90.4 1.9 4.2E-05 53.3 11.6 59 283-345 379-437 (1102)
347 COG2255 RuvB Holliday junction 90.4 0.3 6.4E-06 49.8 3.9 24 305-328 53-76 (332)
348 PRK13341 recombination factor 90.2 1.2 2.5E-05 53.2 9.4 24 305-328 53-76 (725)
349 PRK14954 DNA polymerase III su 90.1 1.6 3.4E-05 51.0 10.1 42 290-331 21-65 (620)
350 COG3973 Superfamily I DNA and 90.0 0.54 1.2E-05 52.8 5.9 62 285-351 212-278 (747)
351 PRK10865 protein disaggregatio 90.0 1.1 2.4E-05 54.7 9.3 38 293-330 186-225 (857)
352 PRK11823 DNA repair protein Ra 89.9 0.92 2E-05 51.0 7.9 62 293-355 68-130 (446)
353 PRK00771 signal recognition pa 89.9 1.3 2.9E-05 49.3 9.0 37 305-341 96-132 (437)
354 PHA03333 putative ATPase subun 89.7 4.6 9.9E-05 46.9 13.0 59 288-347 172-231 (752)
355 PTZ00112 origin recognition co 89.7 2 4.3E-05 51.2 10.3 44 286-329 759-806 (1164)
356 TIGR00595 priA primosomal prot 89.6 2.6 5.5E-05 48.4 11.3 95 605-703 6-101 (505)
357 COG0470 HolB ATPase involved i 89.6 1.4 3E-05 47.4 8.9 29 304-332 23-52 (325)
358 PHA03372 DNA packaging termina 89.5 0.99 2.1E-05 51.2 7.5 129 302-465 201-336 (668)
359 KOG0738 AAA+-type ATPase [Post 89.4 1.2 2.7E-05 47.4 7.6 48 304-355 245-292 (491)
360 cd01120 RecA-like_NTPases RecA 89.3 2 4.3E-05 40.5 8.8 37 307-344 2-38 (165)
361 PRK04132 replication factor C 89.2 2 4.4E-05 51.7 10.4 52 428-479 630-682 (846)
362 KOG0737 AAA+-type ATPase [Post 89.1 0.45 9.8E-06 50.3 4.3 51 302-356 125-175 (386)
363 CHL00095 clpC Clp protease ATP 89.1 1.4 3E-05 53.9 9.2 28 303-330 199-226 (821)
364 PRK12724 flagellar biosynthesi 89.0 2.1 4.5E-05 47.1 9.4 23 306-328 225-247 (432)
365 TIGR02639 ClpA ATP-dependent C 89.0 2.5 5.5E-05 51.0 11.2 29 303-331 202-230 (731)
366 PF06068 TIP49: TIP49 C-termin 88.9 0.6 1.3E-05 49.9 5.1 39 303-344 49-88 (398)
367 PRK06305 DNA polymerase III su 88.9 3.9 8.5E-05 46.1 12.0 42 290-331 22-66 (451)
368 CHL00095 clpC Clp protease ATP 88.9 32 0.00069 42.3 20.7 43 289-331 513-566 (821)
369 TIGR03689 pup_AAA proteasome A 88.8 1.3 2.7E-05 50.4 7.9 28 302-329 214-241 (512)
370 PRK10919 ATP-dependent DNA hel 88.7 0.83 1.8E-05 54.4 6.7 66 285-356 2-71 (672)
371 cd01124 KaiC KaiC is a circadi 88.6 1.1 2.4E-05 43.8 6.5 49 307-356 2-50 (187)
372 KOG1807 Helicases [Replication 88.5 1 2.2E-05 51.8 6.8 91 284-380 377-473 (1025)
373 PRK11034 clpA ATP-dependent Cl 88.5 1.5 3.3E-05 52.5 8.7 28 303-330 206-233 (758)
374 PF00308 Bac_DnaA: Bacterial d 88.3 3.3 7.2E-05 41.7 9.9 37 428-464 97-137 (219)
375 PRK05986 cob(I)alamin adenolsy 88.2 1.7 3.6E-05 42.4 7.3 148 302-483 20-174 (191)
376 PF00265 TK: Thymidine kinase; 88.2 0.6 1.3E-05 45.2 4.2 35 307-342 4-38 (176)
377 PRK07399 DNA polymerase III su 88.2 4.9 0.00011 43.0 11.5 43 290-332 9-54 (314)
378 TIGR00643 recG ATP-dependent D 87.9 5.1 0.00011 47.5 12.6 94 606-702 266-364 (630)
379 PRK08699 DNA polymerase III su 87.8 6 0.00013 42.5 11.9 46 286-331 2-48 (325)
380 PRK07952 DNA replication prote 87.7 1.8 3.9E-05 44.3 7.6 62 288-354 79-144 (244)
381 PF01443 Viral_helicase1: Vira 87.7 1 2.2E-05 45.8 5.9 40 428-470 62-101 (234)
382 PF06733 DEAD_2: DEAD_2; Inte 87.5 0.25 5.5E-06 47.9 1.2 38 405-442 118-159 (174)
383 PRK05580 primosome assembly pr 87.4 4.4 9.6E-05 48.4 11.7 95 606-704 172-267 (679)
384 COG1474 CDC6 Cdc6-related prot 87.3 3.6 7.9E-05 44.9 10.0 48 285-332 20-70 (366)
385 cd00561 CobA_CobO_BtuR ATP:cor 87.2 7 0.00015 37.0 10.6 59 421-479 88-150 (159)
386 KOG0740 AAA+-type ATPase [Post 87.0 0.62 1.3E-05 51.0 3.9 49 303-355 185-233 (428)
387 TIGR03499 FlhF flagellar biosy 86.9 2.6 5.6E-05 44.4 8.5 39 303-341 193-232 (282)
388 PRK05973 replicative DNA helic 86.9 1.7 3.7E-05 44.2 6.7 56 299-355 59-114 (237)
389 TIGR00708 cobA cob(I)alamin ad 86.8 1.2 2.6E-05 42.7 5.2 61 421-481 90-154 (173)
390 COG0552 FtsY Signal recognitio 86.7 2.3 5E-05 44.8 7.7 56 307-363 142-197 (340)
391 PRK06921 hypothetical protein; 86.7 2 4.3E-05 44.8 7.4 43 303-345 116-158 (266)
392 TIGR02397 dnaX_nterm DNA polym 86.5 7.3 0.00016 42.5 12.2 42 290-331 19-63 (355)
393 TIGR01074 rep ATP-dependent DN 86.4 2.2 4.8E-05 51.0 8.7 65 286-356 2-70 (664)
394 TIGR03346 chaperone_ClpB ATP-d 86.4 2.1 4.5E-05 52.6 8.4 39 292-330 180-220 (852)
395 COG2812 DnaX DNA polymerase II 86.3 2.8 6.1E-05 47.4 8.7 42 290-331 21-65 (515)
396 PRK13833 conjugal transfer pro 86.0 1.6 3.5E-05 46.5 6.4 44 283-329 126-169 (323)
397 TIGR02640 gas_vesic_GvpN gas v 86.0 1.9 4E-05 44.9 6.8 49 288-340 5-53 (262)
398 cd03115 SRP The signal recogni 85.9 4.2 9.1E-05 39.2 8.8 35 307-341 3-37 (173)
399 COG1224 TIP49 DNA helicase TIP 85.8 1.3 2.8E-05 46.7 5.3 41 299-342 60-101 (450)
400 KOG1246 DNA-binding protein ju 85.6 0.57 1.2E-05 57.8 3.1 49 50-98 154-204 (904)
401 TIGR01075 uvrD DNA helicase II 85.5 1.8 3.8E-05 52.3 7.2 67 285-357 4-74 (715)
402 TIGR02782 TrbB_P P-type conjug 85.5 1.7 3.7E-05 46.1 6.3 36 295-330 123-158 (299)
403 KOG0384 Chromodomain-helicase 85.4 0.56 1.2E-05 56.7 2.7 25 131-155 300-324 (1373)
404 PF02456 Adeno_IVa2: Adenoviru 85.2 1.7 3.6E-05 45.0 5.6 111 307-454 90-222 (369)
405 KOG1942 DNA helicase, TBP-inte 85.2 1.2 2.6E-05 45.5 4.6 34 295-328 55-88 (456)
406 PRK11773 uvrD DNA-dependent he 85.2 2 4.3E-05 51.8 7.4 66 285-356 9-78 (721)
407 PRK08939 primosomal protein Dn 85.2 1.6 3.4E-05 46.4 5.8 36 303-339 155-190 (306)
408 PRK10867 signal recognition pa 85.1 4.6 0.0001 45.0 9.6 36 306-341 102-138 (433)
409 PRK14712 conjugal transfer nic 85.1 5.9 0.00013 51.0 11.5 59 285-345 835-896 (1623)
410 TIGR00416 sms DNA repair prote 85.0 2.1 4.6E-05 48.3 7.0 53 302-355 92-144 (454)
411 PRK10917 ATP-dependent DNA hel 84.9 6 0.00013 47.3 11.2 94 606-702 292-390 (681)
412 PRK14971 DNA polymerase III su 84.8 13 0.00028 43.8 13.5 41 290-330 22-65 (614)
413 PRK12377 putative replication 84.8 2.4 5.1E-05 43.6 6.7 45 304-349 101-145 (248)
414 PF06745 KaiC: KaiC; InterPro 84.6 1.3 2.9E-05 44.9 4.8 55 302-356 17-71 (226)
415 PRK10865 protein disaggregatio 84.5 66 0.0014 39.7 20.0 25 306-330 600-624 (857)
416 COG1066 Sms Predicted ATP-depe 84.4 3.6 7.7E-05 44.5 7.9 50 305-356 94-143 (456)
417 KOG1133 Helicase of the DEAD s 84.4 1.6 3.5E-05 49.8 5.6 45 283-327 13-57 (821)
418 PRK12726 flagellar biosynthesi 84.2 5.2 0.00011 43.5 9.1 49 304-353 206-258 (407)
419 PHA00012 I assembly protein 84.1 3 6.5E-05 43.9 7.0 26 308-333 5-30 (361)
420 PF00437 T2SE: Type II/IV secr 84.1 1.7 3.7E-05 45.5 5.5 38 294-331 117-154 (270)
421 TIGR01425 SRP54_euk signal rec 84.0 9.5 0.00021 42.4 11.4 35 306-341 102-136 (429)
422 COG3857 AddB ATP-dependent nuc 83.9 1.1E+02 0.0023 37.7 20.2 67 308-375 5-74 (1108)
423 PRK06995 flhF flagellar biosyn 83.9 7.5 0.00016 43.9 10.6 37 304-340 256-293 (484)
424 COG0467 RAD55 RecA-superfamily 83.6 2.9 6.2E-05 43.5 6.9 56 301-357 20-75 (260)
425 TIGR02760 TraI_TIGR conjugativ 83.5 8.3 0.00018 51.6 12.4 60 284-345 1018-1080(1960)
426 PRK09087 hypothetical protein; 83.3 6.7 0.00015 39.7 9.2 36 430-465 89-125 (226)
427 PRK14873 primosome assembly pr 83.1 5.7 0.00012 46.9 9.8 94 606-703 170-265 (665)
428 cd01128 rho_factor Transcripti 83.1 5.4 0.00012 41.0 8.5 27 302-328 14-40 (249)
429 CHL00206 ycf2 Ycf2; Provisiona 83.1 2.2 4.7E-05 54.9 6.5 43 302-348 1628-1670(2281)
430 PRK10416 signal recognition pa 83.0 11 0.00024 40.3 11.2 36 304-340 114-149 (318)
431 TIGR03877 thermo_KaiC_1 KaiC d 83.0 3.6 7.8E-05 42.1 7.2 64 292-356 8-72 (237)
432 COG4626 Phage terminase-like p 82.9 4.6 0.0001 45.5 8.3 59 284-342 60-127 (546)
433 TIGR00959 ffh signal recogniti 82.9 5.5 0.00012 44.4 9.0 36 306-341 101-137 (428)
434 PRK13709 conjugal transfer nic 82.7 8 0.00017 50.5 11.5 60 284-345 966-1028(1747)
435 PRK09376 rho transcription ter 82.5 2.1 4.4E-05 46.6 5.3 30 302-331 167-196 (416)
436 KOG1512 PHD Zn-finger protein 82.2 0.39 8.4E-06 48.0 -0.3 46 51-96 258-315 (381)
437 TIGR00767 rho transcription te 82.1 6.2 0.00013 43.2 8.7 30 302-331 166-195 (415)
438 KOG0442 Structure-specific end 82.0 1.2E+02 0.0026 36.2 21.5 44 603-646 347-400 (892)
439 PRK14970 DNA polymerase III su 81.9 11 0.00024 41.4 11.1 41 290-330 22-65 (367)
440 PRK14721 flhF flagellar biosyn 81.9 12 0.00027 41.4 11.2 55 428-483 269-328 (420)
441 PHA00350 putative assembly pro 81.8 3.2 6.8E-05 45.5 6.5 18 307-324 4-21 (399)
442 KOG0739 AAA+-type ATPase [Post 81.8 4 8.7E-05 42.0 6.7 48 305-356 167-214 (439)
443 TIGR02974 phageshock_pspF psp 81.7 13 0.00029 40.0 11.3 48 299-347 17-64 (329)
444 TIGR03345 VI_ClpV1 type VI sec 81.5 71 0.0015 39.3 18.6 24 307-330 599-622 (852)
445 PF01393 Chromo_shadow: Chromo 81.5 0.48 1E-05 36.3 0.1 26 192-217 3-28 (58)
446 PRK13894 conjugal transfer ATP 81.3 3.2 6.9E-05 44.4 6.2 42 284-328 131-172 (319)
447 PRK08533 flagellar accessory p 81.2 4.5 9.8E-05 41.1 7.1 53 302-355 22-74 (230)
448 PF05127 Helicase_RecD: Helica 81.1 1.5 3.2E-05 42.3 3.3 35 308-342 1-35 (177)
449 KOG2028 ATPase related to the 80.9 6.7 0.00015 41.6 8.1 36 430-467 224-259 (554)
450 PF12861 zf-Apc11: Anaphase-pr 80.7 0.62 1.3E-05 38.4 0.5 43 54-98 35-80 (85)
451 cd01129 PulE-GspE PulE/GspE Th 80.5 3.4 7.3E-05 43.0 6.0 43 286-330 64-106 (264)
452 TIGR02760 TraI_TIGR conjugativ 80.4 13 0.00029 49.7 12.6 62 282-346 426-487 (1960)
453 TIGR03880 KaiC_arch_3 KaiC dom 80.3 4.8 0.0001 40.7 7.0 54 302-356 14-67 (224)
454 PRK14723 flhF flagellar biosyn 80.3 8.4 0.00018 45.9 9.7 38 304-341 185-223 (767)
455 CHL00176 ftsH cell division pr 80.3 5.6 0.00012 46.8 8.3 25 304-328 216-240 (638)
456 KOG1473 Nucleosome remodeling 80.1 0.35 7.5E-06 57.4 -1.6 52 50-101 427-482 (1414)
457 PRK13900 type IV secretion sys 80.1 3.3 7.2E-05 44.6 5.9 35 294-328 150-184 (332)
458 TIGR01243 CDC48 AAA family ATP 80.0 3.6 7.8E-05 49.8 6.9 42 303-348 486-527 (733)
459 smart00300 ChSh Chromo Shadow 80.0 1.3 2.8E-05 34.4 2.0 31 192-225 7-37 (61)
460 COG0541 Ffh Signal recognition 79.7 3.6 7.9E-05 44.8 5.9 58 307-365 103-160 (451)
461 TIGR02655 circ_KaiC circadian 79.5 3.6 7.7E-05 47.0 6.3 64 292-356 250-314 (484)
462 PRK09183 transposase/IS protei 79.3 1.8 4E-05 44.9 3.5 38 302-340 100-137 (259)
463 KOG1244 Predicted transcriptio 79.2 0.47 1E-05 47.2 -0.8 48 50-97 223-283 (336)
464 PF05970 PIF1: PIF1-like helic 79.0 4.4 9.5E-05 44.4 6.6 61 285-346 1-63 (364)
465 PRK05564 DNA polymerase III su 78.9 13 0.00029 39.7 10.2 42 290-331 9-53 (313)
466 cd00984 DnaB_C DnaB helicase C 78.0 4.8 0.0001 41.2 6.3 48 300-347 9-56 (242)
467 TIGR03881 KaiC_arch_4 KaiC dom 77.8 7.3 0.00016 39.5 7.5 54 301-355 17-70 (229)
468 TIGR00064 ftsY signal recognit 77.8 16 0.00035 38.2 10.1 36 305-341 73-108 (272)
469 COG2804 PulE Type II secretory 77.2 5.2 0.00011 44.6 6.4 44 286-332 242-286 (500)
470 TIGR02655 circ_KaiC circadian 77.2 5.1 0.00011 45.8 6.7 64 293-356 9-73 (484)
471 KOG0921 Dosage compensation co 77.1 3.4 7.3E-05 48.6 5.0 58 408-466 474-535 (1282)
472 cd01131 PilT Pilus retraction 77.1 3.5 7.5E-05 40.9 4.7 26 306-331 3-28 (198)
473 PF12846 AAA_10: AAA-like doma 76.6 4.6 0.0001 42.6 5.9 39 304-343 1-39 (304)
474 TIGR01073 pcrA ATP-dependent D 76.4 3.9 8.5E-05 49.5 5.8 66 285-356 4-73 (726)
475 PRK10923 glnG nitrogen regulat 76.4 49 0.0011 37.6 14.6 45 302-347 159-203 (469)
476 PRK08760 replicative DNA helic 76.0 7.5 0.00016 44.2 7.5 63 294-356 219-281 (476)
477 TIGR02688 conserved hypothetic 75.9 6.2 0.00013 43.4 6.4 71 291-365 196-267 (449)
478 KOG0780 Signal recognition par 75.6 9.2 0.0002 41.0 7.3 114 307-462 104-220 (483)
479 PRK09302 circadian clock prote 75.3 8.9 0.00019 44.2 8.1 65 292-356 18-83 (509)
480 TIGR01420 pilT_fam pilus retra 75.0 4.9 0.00011 43.7 5.5 29 302-330 120-148 (343)
481 COG1618 Predicted nucleotide k 74.9 6.1 0.00013 37.1 5.1 126 305-461 6-134 (179)
482 PF13901 DUF4206: Domain of un 74.7 2.2 4.8E-05 42.3 2.5 39 50-97 151-197 (202)
483 PRK04328 hypothetical protein; 74.6 7.9 0.00017 39.9 6.7 53 302-355 21-73 (249)
484 KOG3612 PHD Zn-finger protein 74.5 3.5 7.7E-05 45.6 4.1 50 49-98 58-108 (588)
485 TIGR01241 FtsH_fam ATP-depende 74.4 4 8.8E-05 46.8 5.0 25 303-327 87-111 (495)
486 PF01935 DUF87: Domain of unkn 74.2 4.8 0.00011 40.8 5.0 39 304-342 23-61 (229)
487 PF11793 FANCL_C: FANCL C-term 73.8 0.33 7.2E-06 38.9 -2.9 45 53-97 4-63 (70)
488 cd01122 GP4d_helicase GP4d_hel 73.8 7.7 0.00017 40.5 6.6 53 301-353 27-79 (271)
489 PRK07276 DNA polymerase III su 73.8 26 0.00056 36.8 10.3 46 285-332 2-50 (290)
490 TIGR00764 lon_rel lon-related 73.7 6.7 0.00014 46.1 6.5 53 289-342 22-74 (608)
491 COG0464 SpoVK ATPases of the A 73.5 4.8 0.0001 46.3 5.3 67 285-355 249-323 (494)
492 COG1444 Predicted P-loop ATPas 73.3 31 0.00068 40.9 11.6 59 285-343 211-271 (758)
493 TIGR02525 plasmid_TraJ plasmid 73.2 6.9 0.00015 42.8 6.1 30 302-331 147-176 (372)
494 PF03354 Terminase_1: Phage Te 73.1 23 0.0005 40.4 10.6 54 288-342 1-63 (477)
495 PF00158 Sigma54_activat: Sigm 73.0 13 0.00028 35.6 7.4 55 293-348 11-65 (168)
496 cd01130 VirB11-like_ATPase Typ 72.9 4.9 0.00011 39.3 4.5 43 283-328 7-49 (186)
497 PRK13851 type IV secretion sys 72.9 3.8 8.2E-05 44.3 4.0 34 295-328 153-186 (344)
498 PRK05748 replicative DNA helic 72.9 9.8 0.00021 43.1 7.5 62 292-353 191-252 (448)
499 cd00034 ChSh Chromo Shadow Dom 72.6 1.2 2.7E-05 33.5 0.1 29 194-225 2-31 (54)
500 PRK08903 DnaA regulatory inact 72.5 8.2 0.00018 39.1 6.2 38 302-340 40-77 (227)
No 1
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=9.9e-134 Score=1126.71 Aligned_cols=603 Identities=52% Similarity=0.898 Sum_probs=547.7
Q ss_pred hhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhhhccCC--CCchhhhccCCccchhhhHhhhhcCCc
Q 003450 128 IFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSSNN--NAEEDFVAIRPEWTTVDRILACRGEDD 205 (819)
Q Consensus 128 ~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~~~~~~eril~~~~~~~ 205 (819)
....+|||||+|+||+||+|++++.|... +.++-.|++||+++..... ...++..+++++|.+|||||++....+
T Consensus 223 ~e~~qFlIKWkg~SyLHctWet~~~L~~~---~~rG~kKv~nf~kK~~e~~~~~r~E~~~~~~~dy~~VdRIia~~~~~d 299 (1373)
T KOG0384|consen 223 EEEEQFLIKWKGWSYLHCTWETESELLEM---NVRGLKKVDNFKKKVIEEDRWRRQEREEDLNKDYVIVDRIIAEQTSKD 299 (1373)
T ss_pred chhhhhheeeccccceeccccchHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcccCCC
Confidence 34579999999999999999999998642 2345578999988754321 113445668999999999999986555
Q ss_pred ceeeEeeecccccccccccCCCCccc-cHHHHHHHHHHhhhccccccCccCCCCccccccCCCCcccccccCCCCCCCCC
Q 003450 206 EKEYLVKYKELSYDECYWEYESDISA-FQPEIERFIKIQSRSHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGG 284 (819)
Q Consensus 206 ~~~~lvKw~~l~y~~~TWE~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 284 (819)
.+|||||+||||++||||..++|.. .+.++++|..+.... ..|.......+....|.+++.+|.++.|.
T Consensus 300 -~eYLvKW~~LpY~e~TWE~~~~I~~~~~~~~~~~~~Re~sk---------~~p~~~~~~~~~rp~~~Kle~qp~~~~g~ 369 (1373)
T KOG0384|consen 300 -PEYLVKWRGLPYEECTWEDAEDIAKKAQEEIEEFQSRENSK---------TLPNKGCKYRPQRPRFRKLEKQPEYKGGN 369 (1373)
T ss_pred -ceeEEEecCCCcccccccchhhhhhhHHHHHHHHhhhhccc---------cCCCCccccCccchhHHHhhcCccccccc
Confidence 9999999999999999999998865 466678776642211 11111222334567899999999999999
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC--CCceEEEecCcchHHHHHHHHHHcCCCeEE
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNWEREFATWAPQMNVV 362 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~--~~~~LIv~P~~ll~qW~~e~~~~~p~~~v~ 362 (819)
+||+||++|+|||.+.|.++.+||||||||||||+|+++||.+++... .||||||||.|++.+|++||..|+ +++++
T Consensus 370 ~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~-~mn~i 448 (1373)
T KOG0384|consen 370 ELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWEREFETWT-DMNVI 448 (1373)
T ss_pred hhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHHHHHHh-hhcee
Confidence 999999999999999999999999999999999999999999998754 579999999999999999999999 99999
Q ss_pred EEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccccccC
Q 003450 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (819)
Q Consensus 363 ~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~~kn 442 (819)
+|+|+..+|..+++|++++..+. +..+|+++||||+++.++...|..++|.+++||||||+||
T Consensus 449 ~y~g~~~sr~~i~~ye~~~~~~~-----------------~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN 511 (1373)
T KOG0384|consen 449 VYHGNLESRQLIRQYEFYHSSNT-----------------KKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKN 511 (1373)
T ss_pred eeecchhHHHHHHHHHheecCCc-----------------cccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCc
Confidence 99999999999999999876642 3468999999999999999999999999999999999999
Q ss_pred cccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHHHHHhhh
Q 003450 443 KDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKK 522 (819)
Q Consensus 443 ~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~ 522 (819)
..+.++..+..+..++||++||||+||++.|||+|++||.|+.|.+...|...| +..+...+..|+..|+|+|+||+|+
T Consensus 512 ~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~-~~~~e~~~~~L~~~L~P~~lRr~kk 590 (1373)
T KOG0384|consen 512 DESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEF-DEETEEQVRKLQQILKPFLLRRLKK 590 (1373)
T ss_pred hHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhh-cchhHHHHHHHHHHhhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999 7888899999999999999999999
Q ss_pred hhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHhcCCCcccCCCCCCccC------
Q 003450 523 DVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG-GAQISLINVVMELRKLCCHPYMLEGVEPDIED------ 595 (819)
Q Consensus 523 dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~-~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~------ 595 (819)
||.+.||++.++++.|+||+.|+++|+.|+++|+..|.++. ++..+++|++|+|++|||||||+.+.+.....
T Consensus 591 dvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~ 670 (1373)
T KOG0384|consen 591 DVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKM 670 (1373)
T ss_pred hhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999998764 44478999999999999999999988765433
Q ss_pred cHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCC
Q 003450 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNS 675 (819)
Q Consensus 596 ~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~ 675 (819)
.+..+..++.+|||+.+|++||.+|++.||||||||||+.|||+|++||..+||+|.||||++.++.|+.+|++||++++
T Consensus 671 ~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~S 750 (1373)
T KOG0384|consen 671 RDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDS 750 (1373)
T ss_pred hHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCC
Confidence 24688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhhHHH
Q 003450 676 SRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHL 755 (819)
Q Consensus 676 ~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~~K~~l~~~ 755 (819)
+.||||+||+|||.||||++||||||||++|||++++||++|||||||++.|.||||||++||||.|++++..|+.|+++
T Consensus 751 ddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~a 830 (1373)
T KOG0384|consen 751 DDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHA 830 (1373)
T ss_pred CceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhchhhh
Q 003450 756 VVGRLKA 762 (819)
Q Consensus 756 v~~~~~~ 762 (819)
|++.+..
T Consensus 831 VIQ~m~t 837 (1373)
T KOG0384|consen 831 VIQRMDT 837 (1373)
T ss_pred HHHhhcc
Confidence 9988874
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=3.7e-109 Score=888.12 Aligned_cols=459 Identities=50% Similarity=0.827 Sum_probs=433.0
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc-CC-CCceEEEecCcchHHHHHHHHH
Q 003450 277 SPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ER-ISPHLVVAPLSTLRNWEREFAT 354 (819)
Q Consensus 277 ~p~~~~~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~-~~-~~~~LIv~P~~ll~qW~~e~~~ 354 (819)
+|.++.+++|||||++|++||+..|.++-||||||+||+|||+|+|+++.+++. .+ .||+||+||.|++.||.+||.+
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~r 238 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKR 238 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999976 33 6799999999999999999999
Q ss_pred HcCCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEe
Q 003450 355 WAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIV 434 (819)
Q Consensus 355 ~~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIv 434 (819)
|+|++++++|+|++..|..+.+--+ ....|+|+||||+++.++.+.|+.++|.++||
T Consensus 239 f~P~l~~~~~~Gdk~eR~~~~r~~~-----------------------~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvI 295 (971)
T KOG0385|consen 239 FTPSLNVVVYHGDKEERAALRRDIM-----------------------LPGRFDVCITSYEIAIKDKSFLKKFNWRYLVI 295 (971)
T ss_pred hCCCcceEEEeCCHHHHHHHHHHhh-----------------------ccCCCceEeehHHHHHhhHHHHhcCCceEEEe
Confidence 9999999999999999987766422 12489999999999999999999999999999
Q ss_pred cccccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhc---cchHHHHHHHHHH
Q 003450 435 DEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD---INQEEQISRLHRM 511 (819)
Q Consensus 435 DEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~---~~~~~~~~~l~~~ 511 (819)
|||||+||.+|.+.+.+..+.+.+||||||||+|||+.|||+||+|+.|+.|.+.+.|..+|.. ......+.+||.+
T Consensus 296 DEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~v 375 (971)
T KOG0385|consen 296 DEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKV 375 (971)
T ss_pred chhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999964 2345688999999
Q ss_pred HhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHhcCCCcccCCCC
Q 003450 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGG-AQISLINVVMELRKLCCHPYMLEGVE 590 (819)
Q Consensus 512 l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~-~~~~~~~~~~~lr~~~~hp~l~~~~~ 590 (819)
++||++||+|.+|...|||+.+.+++|.||..|++.|+.++.+....+...++ ....+.|++|+||+|||||||+++.+
T Consensus 376 L~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~e 455 (971)
T KOG0385|consen 376 LRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAE 455 (971)
T ss_pred hhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCC
Confidence 99999999999999999999999999999999999999999999888876554 56789999999999999999999987
Q ss_pred CCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHh
Q 003450 591 PDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRF 670 (819)
Q Consensus 591 ~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F 670 (819)
|. .+.....+++..|||+.+|++||..+.++||||||||||+.+||+|++|+..+||.|+|+||+++.++|..+|+.|
T Consensus 456 Pg--~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~f 533 (971)
T KOG0385|consen 456 PG--PPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAF 533 (971)
T ss_pred CC--CCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhc
Confidence 74 2334457889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHhh
Q 003450 671 NAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKM 750 (819)
Q Consensus 671 ~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~~K~ 750 (819)
|.+++..|+||+||+|||.||||++||+||+||++|||+.++||+.|||||||+|+|.||||+|++||||+|++++..|+
T Consensus 534 n~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL 613 (971)
T KOG0385|consen 534 NAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKL 613 (971)
T ss_pred CCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhchh
Q 003450 751 VLEHLVVGRL 760 (819)
Q Consensus 751 ~l~~~v~~~~ 760 (819)
+|.+.|++..
T Consensus 614 ~Ld~~VIq~g 623 (971)
T KOG0385|consen 614 RLDKLVIQQG 623 (971)
T ss_pred chhhhhhccC
Confidence 9999999654
No 3
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=2.6e-90 Score=745.94 Aligned_cols=466 Identities=44% Similarity=0.665 Sum_probs=405.4
Q ss_pred cCCCCCC-CCCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEecCcchHHHHHHH
Q 003450 275 EHSPEFL-SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREF 352 (819)
Q Consensus 275 ~~~p~~~-~~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~-~~~~LIv~P~~ll~qW~~e~ 352 (819)
..+|..+ ++.+|+|||+-|||||.-.+.++-+||||||||+|||+|+|||+++|++.+ .+|+|||||.|++.||.+||
T Consensus 388 ~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleNWlrEf 467 (941)
T KOG0389|consen 388 TEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLENWLREF 467 (941)
T ss_pred ccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHHHHHHHH
Confidence 3355544 678999999999999998999999999999999999999999999998865 56999999999999999999
Q ss_pred HHHcCCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHh---hcccccCCccc
Q 003450 353 ATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMIN---LDSASLKPIKW 429 (819)
Q Consensus 353 ~~~~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~---~~~~~l~~~~~ 429 (819)
.+|+|.+.|..|+|+..+|..++..- .....+|+|++|||..+. .+..+|+..+|
T Consensus 468 ~kwCPsl~Ve~YyGSq~ER~~lR~~i----------------------~~~~~~ydVllTTY~la~~~kdDRsflk~~~~ 525 (941)
T KOG0389|consen 468 AKWCPSLKVEPYYGSQDERRELRERI----------------------KKNKDDYDVLLTTYNLAASSKDDRSFLKNQKF 525 (941)
T ss_pred HHhCCceEEEeccCcHHHHHHHHHHH----------------------hccCCCccEEEEEeecccCChHHHHHHHhccc
Confidence 99999999999999999998887742 112348999999999886 36788999999
Q ss_pred eEEEecccccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCCh-HHHHHHHhccch-------
Q 003450 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSL-EEFQEEFKDINQ------- 501 (819)
Q Consensus 430 ~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~-~~f~~~~~~~~~------- 501 (819)
+++|.||+|.+||..|.+++.|+.+++++||+|||||+|||+.||++||.|+.|+.|.+. ..+..-|.....
T Consensus 526 n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~ 605 (941)
T KOG0389|consen 526 NYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIEN 605 (941)
T ss_pred cEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhH
Confidence 999999999999999999999999999999999999999999999999999999999744 556655643322
Q ss_pred ----HHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHH
Q 003450 502 ----EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGA-QISLINVVMEL 576 (819)
Q Consensus 502 ----~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~-~~~~~~~~~~l 576 (819)
...+.+.+.+++||+|||.|++|+.+||||..++.+|+|++.|+.+|..+++.....+.....+ ...-.+++|+|
T Consensus 606 ~~l~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmql 685 (941)
T KOG0389|consen 606 ALLSQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQL 685 (941)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHH
Confidence 3468889999999999999999999999999999999999999999999988763333322222 01115699999
Q ss_pred HHhcCCCcccCCCCCCc---------------cC--cHHHH-----------H----------------HhhhcCchHHH
Q 003450 577 RKLCCHPYMLEGVEPDI---------------ED--TNESF-----------K----------------QLLESSGKLQL 612 (819)
Q Consensus 577 r~~~~hp~l~~~~~~~~---------------~~--~~~~~-----------~----------------~l~~~s~Kl~~ 612 (819)
|++++||-|+.....+. .. ....+ . .++-.|||...
T Consensus 686 RK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~ 765 (941)
T KOG0389|consen 686 RKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRK 765 (941)
T ss_pred HHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhH
Confidence 99999999875432110 00 00000 0 12336999999
Q ss_pred HHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCC
Q 003450 613 LDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGIN 692 (819)
Q Consensus 613 l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~Gin 692 (819)
|.+||.++...|+||||||||+.|||+|+.+|...|+.|.|+||++....||.+|+.||.+ .+++|||+||+|||.|||
T Consensus 766 L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d-~difVFLLSTKAGG~GIN 844 (941)
T KOG0389|consen 766 LKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTD-KDIFVFLLSTKAGGFGIN 844 (941)
T ss_pred HHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccC-CceEEEEEeeccCcceec
Confidence 9999999999999999999999999999999999999999999999999999999999985 468999999999999999
Q ss_pred cccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhhHHHHhchhhhc
Q 003450 693 LATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQ 763 (819)
Q Consensus 693 L~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~~K~~l~~~v~~~~~~~ 763 (819)
|++||+||++|.++||.++.||..||||+||+|+|+|||||+++||||.|++++++|+.|...+.+..+..
T Consensus 845 Lt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k~~ 915 (941)
T KOG0389|consen 845 LTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGKGV 915 (941)
T ss_pred ccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCccch
Confidence 99999999999999999999999999999999999999999999999999999999999999997655443
No 4
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.1e-86 Score=778.89 Aligned_cols=461 Identities=48% Similarity=0.790 Sum_probs=420.9
Q ss_pred cccCCCCCCCCCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--CCCceEEEecCcchHHHHH
Q 003450 273 QYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWER 350 (819)
Q Consensus 273 ~~~~~p~~~~~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~--~~~~~LIv~P~~ll~qW~~ 350 (819)
.+..+|..+. ++|||||++|++||...+.++.+|||||+||+|||+|+|+++.++... ..+|+|||||.+++.||.+
T Consensus 158 ~l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~ 236 (1033)
T PLN03142 158 RLLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMN 236 (1033)
T ss_pred eeccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHH
Confidence 3556788887 799999999999999999999999999999999999999999988653 3469999999999999999
Q ss_pred HHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccce
Q 003450 351 EFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQ 430 (819)
Q Consensus 351 e~~~~~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~ 430 (819)
||.+|+|.+++++|+|+...+..+....+ ...+++|+||||+++..+...+..+.|+
T Consensus 237 Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~-----------------------~~~~~dVvITSYe~l~~e~~~L~k~~W~ 293 (1033)
T PLN03142 237 EIRRFCPVLRAVKFHGNPEERAHQREELL-----------------------VAGKFDVCVTSFEMAIKEKTALKRFSWR 293 (1033)
T ss_pred HHHHHCCCCceEEEeCCHHHHHHHHHHHh-----------------------cccCCCcceecHHHHHHHHHHhccCCCC
Confidence 99999999999999999988776554321 1246899999999999999999999999
Q ss_pred EEEecccccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhcc---chHHHHHH
Q 003450 431 CMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---NQEEQISR 507 (819)
Q Consensus 431 ~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~---~~~~~~~~ 507 (819)
+|||||||++||..+++++++..+.+.+||+|||||++|++.|||+|++||.|+.|++...|..+|... .....+..
T Consensus 294 ~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~ 373 (1033)
T PLN03142 294 YIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQ 373 (1033)
T ss_pred EEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998642 33456889
Q ss_pred HHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccC
Q 003450 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (819)
Q Consensus 508 l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~ 587 (819)
|+.+++|+++||+|.++...||++.+.+++|+||+.|+++|+.++.+....+... +....+++++++||+||+||+++.
T Consensus 374 L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g-~~~~~LlnilmqLRk~cnHP~L~~ 452 (1033)
T PLN03142 374 LHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAG-GERKRLLNIAMQLRKCCNHPYLFQ 452 (1033)
T ss_pred HHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhCCHHhhh
Confidence 9999999999999999999999999999999999999999999999887766543 345578999999999999999998
Q ss_pred CCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHH
Q 003450 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (819)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i 667 (819)
+.++... ......++..|+|+.+|.++|..+...|+||||||||+.++++|+++|...|+++.+++|+++..+|+.+|
T Consensus 453 ~~ep~~~--~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~I 530 (1033)
T PLN03142 453 GAEPGPP--YTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASI 530 (1033)
T ss_pred cccccCc--ccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHH
Confidence 7665322 12235677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 003450 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 747 (819)
Q Consensus 668 ~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~ 747 (819)
++||++++..++||+||+|||+||||+.|++||+||++|||+.+.||+||+||+||+++|.||+|++.+||||+|++++.
T Consensus 531 d~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~ 610 (1033)
T PLN03142 531 DAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAY 610 (1033)
T ss_pred HHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHH
Confidence 99999888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHhchh
Q 003450 748 KKMVLEHLVVGRL 760 (819)
Q Consensus 748 ~K~~l~~~v~~~~ 760 (819)
+|+.++..|++..
T Consensus 611 ~Kl~Ld~~Vi~~g 623 (1033)
T PLN03142 611 KKLALDALVIQQG 623 (1033)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999643
No 5
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=5.4e-87 Score=721.41 Aligned_cols=466 Identities=38% Similarity=0.648 Sum_probs=399.5
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC--CCceEEEecCcchHHHHHHHH
Q 003450 276 HSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNWEREFA 353 (819)
Q Consensus 276 ~~p~~~~~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~--~~~~LIv~P~~ll~qW~~e~~ 353 (819)
..|.++. ..|+|||.+||+||...+.++.||||+|+||||||+|+|+|++.+.+.+ .+|+|||||.+++.||.+||.
T Consensus 197 ~vPg~I~-~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~ 275 (923)
T KOG0387|consen 197 KVPGFIW-SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQ 275 (923)
T ss_pred cccHHHH-HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHH
Confidence 3454443 4799999999999999999999999999999999999999999998763 369999999999999999999
Q ss_pred HHcCCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEE
Q 003450 354 TWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMI 433 (819)
Q Consensus 354 ~~~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lI 433 (819)
+|+|.+.|.++||+...-. ++.+... .++... ..+......+|+||||+.++...+.+..+.|+++|
T Consensus 276 ~w~p~~rv~ilh~t~s~~r----~~~~~~~------~~~~~~---L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~I 342 (923)
T KOG0387|consen 276 TWWPPFRVFILHGTGSGAR----YDASHSS------HKKDKL---LIRKVATDGGILITTYDGFRIQGDDLLGILWDYVI 342 (923)
T ss_pred HhCcceEEEEEecCCcccc----cccchhh------hhhhhh---heeeecccCcEEEEehhhhcccCcccccccccEEE
Confidence 9999999999999876321 0000000 000000 00112235679999999999999999999999999
Q ss_pred ecccccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccc-------------
Q 003450 434 VDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN------------- 500 (819)
Q Consensus 434 vDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~------------- 500 (819)
+||+|+++|++++++.+++.+++.+|++|||||+||++.|||+|+.|+.|+.+++...|.+.|....
T Consensus 343 LDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv 422 (923)
T KOG0387|consen 343 LDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQV 422 (923)
T ss_pred ecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999996432
Q ss_pred --hHHHHHHHHHHHhhHHHHHhhhhhhh-cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHH
Q 003450 501 --QEEQISRLHRMLAPHLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELR 577 (819)
Q Consensus 501 --~~~~~~~l~~~l~~~~lrr~k~dv~~-~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr 577 (819)
.+.-...|+.+|.||+|||+|+|+.. .||.|.+.+++|.||+.|+.+|..+++... +...-......+..+.-||
T Consensus 423 ~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~--v~~i~ng~~~~l~Gi~iLr 500 (923)
T KOG0387|consen 423 QTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSE--VNKILNGKRNCLSGIDILR 500 (923)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHH--HHHHHcCCccceechHHHH
Confidence 13445679999999999999999998 999999999999999999999999987532 1111222334555667899
Q ss_pred HhcCCCcccCCCCC-CccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHh-hCCCeEEEEe
Q 003450 578 KLCCHPYMLEGVEP-DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT-FKKWQYERID 655 (819)
Q Consensus 578 ~~~~hp~l~~~~~~-~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~-~~g~~~~~l~ 655 (819)
++||||.|+..... ....+ .....+..|||+++|.++|.....+|+|||+|+|.+.|+|+|+.+|. .+||.|.++|
T Consensus 501 kICnHPdll~~~~~~~~~~~--D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmD 578 (923)
T KOG0387|consen 501 KICNHPDLLDRRDEDEKQGP--DYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMD 578 (923)
T ss_pred hhcCCcccccCcccccccCC--CcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEec
Confidence 99999999987421 11111 11145678999999999999999999999999999999999999999 7999999999
Q ss_pred ccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeC
Q 003450 656 GKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (819)
Q Consensus 656 G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~ 735 (819)
|.++...|+.+|++||++.+ .+|||++|++||.|+||++||.||+|||+|||+.+.||..||+|+||++.|.||||++.
T Consensus 579 GtT~~~~R~~lVd~Fne~~s-~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~ 657 (923)
T KOG0387|consen 579 GTTPAALRQKLVDRFNEDES-IFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTA 657 (923)
T ss_pred CCCccchhhHHHHhhcCCCc-eEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecC
Confidence 99999999999999998664 67899999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhhHHHHhchh
Q 003450 736 GSIEERMMQMTKKKMVLEHLVVGRL 760 (819)
Q Consensus 736 ~TvEe~i~~~~~~K~~l~~~v~~~~ 760 (819)
+||||+||.++--|..|.+.++..-
T Consensus 658 gTIEEkiY~rQI~Kq~Ltn~il~~p 682 (923)
T KOG0387|consen 658 GTIEEKIYHRQIFKQFLTNRILKNP 682 (923)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcCH
Confidence 9999999999999999999998543
No 6
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=3.5e-87 Score=708.54 Aligned_cols=457 Identities=45% Similarity=0.748 Sum_probs=410.2
Q ss_pred ccCCCCCCCCCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--CCCceEEEecCcchHHHHHH
Q 003450 274 YEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWERE 351 (819)
Q Consensus 274 ~~~~p~~~~~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~--~~~~~LIv~P~~ll~qW~~e 351 (819)
...+|.++. .+|++||+.|++||..++.+|-+|||||+||+|||+|+|+++++|.+. -+||||||+|.+++.||.+|
T Consensus 557 tV~qPkil~-ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaqE 635 (1185)
T KOG0388|consen 557 TVPQPKILK-CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQE 635 (1185)
T ss_pred eccCchhhh-hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHHH
Confidence 446777776 789999999999999999999999999999999999999999999864 36799999999999999999
Q ss_pred HHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceE
Q 003450 352 FATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQC 431 (819)
Q Consensus 352 ~~~~~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~ 431 (819)
|.+|.|.++++.|.|+..+|..++.+= ...+ .-.....|||+||||+++..+...|..++|.+
T Consensus 636 isrFlP~~k~lpywGs~~eRkiLrKfw--~rKn---------------mY~rna~fhVviTSYQlvVtDeky~qkvKWQY 698 (1185)
T KOG0388|consen 636 ISRFLPSFKVLPYWGSPSERKILRKFW--NRKN---------------MYRRNAPFHVVITSYQLVVTDEKYLQKVKWQY 698 (1185)
T ss_pred HHHhCccceeecCcCChhhhHHHHHhc--chhh---------------hhccCCCceEEEEeeeeeechHHHHHhhhhhh
Confidence 999999999999999999999888741 0000 01134689999999999999999999999999
Q ss_pred EEecccccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhcc----------ch
Q 003450 432 MIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI----------NQ 501 (819)
Q Consensus 432 lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~----------~~ 501 (819)
.|+|||+-+|+..|..++.|..++++.|||||||||||++.|||.||+|+.|..|.+..+|.++|..- -+
T Consensus 699 MILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tln 778 (1185)
T KOG0388|consen 699 MILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLN 778 (1185)
T ss_pred eehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999642 23
Q ss_pred HHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcC
Q 003450 502 EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (819)
Q Consensus 502 ~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~ 581 (819)
..++.+||.+|+||||||.|.+|...|..+.+..++|.||..|+.+|+.+....... .+.+++|+||++||
T Consensus 779 eqqL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~---------E~~~~vmQlrKVCN 849 (1185)
T KOG0388|consen 779 EQQLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISSM---------EMENLVMQLRKVCN 849 (1185)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhHH---------HHHHHHHHHHHhcC
Confidence 567899999999999999999999999999999999999999999999998765422 23469999999999
Q ss_pred CCcccCCCCCCcc-------------------------------------------------------------------
Q 003450 582 HPYMLEGVEPDIE------------------------------------------------------------------- 594 (819)
Q Consensus 582 hp~l~~~~~~~~~------------------------------------------------------------------- 594 (819)
||.|+...++...
T Consensus 850 HPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~ 929 (1185)
T KOG0388|consen 850 HPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLS 929 (1185)
T ss_pred ChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccce
Confidence 9988743322100
Q ss_pred -----------CcH------------------H-----------------------------------------------
Q 003450 595 -----------DTN------------------E----------------------------------------------- 598 (819)
Q Consensus 595 -----------~~~------------------~----------------------------------------------- 598 (819)
..+ +
T Consensus 930 ~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~ 1009 (1185)
T KOG0388|consen 930 LEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHI 1009 (1185)
T ss_pred eeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCc
Confidence 000 0
Q ss_pred ---------HHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHH
Q 003450 599 ---------SFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (819)
Q Consensus 599 ---------~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~ 669 (819)
....++..|||+..|++||.++++.||+||+|.|++.|+|+|++||..+||.|.|+||+.....|..++..
T Consensus 1010 pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrD 1089 (1185)
T KOG0388|consen 1010 PLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRD 1089 (1185)
T ss_pred ccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhh
Confidence 00112446999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHh
Q 003450 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKK 749 (819)
Q Consensus 670 F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~~K 749 (819)
|+. +++||||+||+|||.||||++||+|||||++|||..+.||++|+||.||+++|+||||++++||||+|++++.+|
T Consensus 1090 wQ~--sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK 1167 (1185)
T KOG0388|consen 1090 WQA--SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQK 1167 (1185)
T ss_pred ccC--CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhH
Confidence 998 678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhch
Q 003450 750 MVLEHLVVGR 759 (819)
Q Consensus 750 ~~l~~~v~~~ 759 (819)
....+.||.+
T Consensus 1168 ~~vQq~Vm~G 1177 (1185)
T KOG0388|consen 1168 DEVQQMVMHG 1177 (1185)
T ss_pred HHHHHHHHcC
Confidence 9999999865
No 7
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=6.2e-87 Score=735.51 Aligned_cols=456 Identities=41% Similarity=0.728 Sum_probs=408.7
Q ss_pred CCCCCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--CCCceEEEecCcchHHHHHHHHHHcC
Q 003450 280 FLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWEREFATWAP 357 (819)
Q Consensus 280 ~~~~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~--~~~~~LIv~P~~ll~qW~~e~~~~~p 357 (819)
++-.|.||+||..|++||...|.++-|||||||||+|||+|+|+++++|..+ .+||+|||||++++.||.-||++|+|
T Consensus 610 sLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwcP 689 (1958)
T KOG0391|consen 610 SLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWCP 689 (1958)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhCC
Confidence 3444789999999999999999999999999999999999999999999753 46799999999999999999999999
Q ss_pred CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEeccc
Q 003450 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEG 437 (819)
Q Consensus 358 ~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEa 437 (819)
+++++.|+|+..+|+..++- + .+...|||.||||..+..+...|+...|.++|+|||
T Consensus 690 glKILTYyGs~kErkeKRqg-W----------------------~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEa 746 (1958)
T KOG0391|consen 690 GLKILTYYGSHKERKEKRQG-W----------------------AKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEA 746 (1958)
T ss_pred cceEeeecCCHHHHHHHhhc-c----------------------cCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhh
Confidence 99999999999998765541 1 133579999999999999999999999999999999
Q ss_pred ccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccc----------hHHHHHH
Q 003450 438 HRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN----------QEEQISR 507 (819)
Q Consensus 438 H~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~----------~~~~~~~ 507 (819)
|++||..+..++++..+++.+||||||||+||++.|||+|++||.|..|.+...|+.+|++.- ....+.+
T Consensus 747 qnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn~klV~R 826 (1958)
T KOG0391|consen 747 QNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYNHKLVIR 826 (1958)
T ss_pred hhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999997522 2467899
Q ss_pred HHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccC
Q 003450 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (819)
Q Consensus 508 l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~ 587 (819)
||++++||+|||+|.||++.||.|.+++|+|.||.-|+.+|++++.+.-..-.-..|...+.+|++|+||+|||||-|++
T Consensus 827 LHkVlrPfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCNHPnLfE 906 (1958)
T KOG0391|consen 827 LHKVLRPFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCNHPNLFE 906 (1958)
T ss_pred HHHHhHHHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHHHHHHHcCCCCcCC
Confidence 99999999999999999999999999999999999999999999876544444456777889999999999999998772
Q ss_pred CCC-----------------------------C-----------------------------------------------
Q 003450 588 GVE-----------------------------P----------------------------------------------- 591 (819)
Q Consensus 588 ~~~-----------------------------~----------------------------------------------- 591 (819)
..- +
T Consensus 907 pRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~ 986 (1958)
T KOG0391|consen 907 PRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTF 986 (1958)
T ss_pred CCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCccc
Confidence 100 0
Q ss_pred ------------------C--------------------------------cc---------------------------
Q 003450 592 ------------------D--------------------------------IE--------------------------- 594 (819)
Q Consensus 592 ------------------~--------------------------------~~--------------------------- 594 (819)
. ..
T Consensus 987 ~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~ 1066 (1958)
T KOG0391|consen 987 AGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVP 1066 (1958)
T ss_pred cccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeecccc
Confidence 0 00
Q ss_pred ----------------------------C------------------------------c---------HHHHH------
Q 003450 595 ----------------------------D------------------------------T---------NESFK------ 601 (819)
Q Consensus 595 ----------------------------~------------------------------~---------~~~~~------ 601 (819)
+ . .+.+.
T Consensus 1067 t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~ 1146 (1958)
T KOG0391|consen 1067 TQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVN 1146 (1958)
T ss_pred ccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhcc
Confidence 0 0 00000
Q ss_pred ------------------------------------------Hh------------------------------------
Q 003450 602 ------------------------------------------QL------------------------------------ 603 (819)
Q Consensus 602 ------------------------------------------~l------------------------------------ 603 (819)
.+
T Consensus 1147 APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~ 1226 (1958)
T KOG0391|consen 1147 APVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQ 1226 (1958)
T ss_pred CcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHH
Confidence 00
Q ss_pred -----------------------------hhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEE
Q 003450 604 -----------------------------LESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERI 654 (819)
Q Consensus 604 -----------------------------~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l 654 (819)
...+||++.|.-||..|+..|||||||+|++.|||+|+.+|+++||-|.|+
T Consensus 1227 qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RL 1306 (1958)
T KOG0391|consen 1227 QLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRL 1306 (1958)
T ss_pred HHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEe
Confidence 003889999999999999999999999999999999999999999999999
Q ss_pred eccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEe
Q 003450 655 DGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLIT 734 (819)
Q Consensus 655 ~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~ 734 (819)
||+++.++||.++.+||. +..+|||++||++||+||||++||||||||+||||..+.|+..|+|||||+++|+|||||+
T Consensus 1307 Dg~t~vEqRQaLmerFNa-D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLIS 1385 (1958)
T KOG0391|consen 1307 DGNTSVEQRQALMERFNA-DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLIS 1385 (1958)
T ss_pred cCCccHHHHHHHHHHhcC-CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeec
Confidence 999999999999999998 5578999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhhHHHHhch
Q 003450 735 RGSIEERMMQMTKKKMVLEHLVVGR 759 (819)
Q Consensus 735 ~~TvEe~i~~~~~~K~~l~~~v~~~ 759 (819)
++||||+|+..+++|..+.+.++++
T Consensus 1386 e~TIEeniLkkanqKr~L~evaiqg 1410 (1958)
T KOG0391|consen 1386 ERTIEENILKKANQKRMLDEVAIQG 1410 (1958)
T ss_pred cchHHHHHHhhhhHHHHHHHHhhcc
Confidence 9999999999999999999999854
No 8
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2e-87 Score=739.84 Aligned_cols=461 Identities=46% Similarity=0.754 Sum_probs=423.2
Q ss_pred cccCCCCCCCCCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--CCCceEEEecCcchHHHHH
Q 003450 273 QYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWER 350 (819)
Q Consensus 273 ~~~~~p~~~~~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~--~~~~~LIv~P~~ll~qW~~ 350 (819)
.+..+|..+.|++|++||+.|+.||...+.++-++|||||||+|||+|+|+++.++.+. ..+|+|||||++++.+|..
T Consensus 382 ~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~ 461 (1157)
T KOG0386|consen 382 NVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSS 461 (1157)
T ss_pred ccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchh
Confidence 46789999999999999999999999999999999999999999999999999999864 3579999999999999999
Q ss_pred HHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccce
Q 003450 351 EFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQ 430 (819)
Q Consensus 351 e~~~~~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~ 430 (819)
||.+|.|.+..+.|.|++..|..+..- ....+|+|++|||+-+..+...|..+.|.
T Consensus 462 Ef~kWaPSv~~i~YkGtp~~R~~l~~q------------------------ir~gKFnVLlTtyEyiikdk~lLsKI~W~ 517 (1157)
T KOG0386|consen 462 EFPKWAPSVQKIQYKGTPQQRSGLTKQ------------------------QRHGKFNVLLTTYEYIIKDKALLSKISWK 517 (1157)
T ss_pred hccccccceeeeeeeCCHHHHhhHHHH------------------------HhcccceeeeeeHHHhcCCHHHHhccCCc
Confidence 999999999999999999999765542 12379999999999999999999999999
Q ss_pred EEEecccccccCcccHHHHHHH-hcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhcc----------
Q 003450 431 CMIVDEGHRLKNKDSKLFSSLK-QYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---------- 499 (819)
Q Consensus 431 ~lIvDEaH~~kn~~s~~~~~l~-~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~---------- 499 (819)
++||||.|++||..+++...+. .+.+.+|++|||||+||++.|||+||+|+-|..|.+...|.++|...
T Consensus 518 yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eL 597 (1157)
T KOG0386|consen 518 YMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVEL 597 (1157)
T ss_pred ceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccc
Confidence 9999999999999999999999 67899999999999999999999999999999999999999998531
Q ss_pred ch---HHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHh--cCCCcchHHHHHH
Q 003450 500 NQ---EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTR--RGGAQISLINVVM 574 (819)
Q Consensus 500 ~~---~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~--~~~~~~~~~~~~~ 574 (819)
+. --.+.+||++|+||++||.|++|...||.+.+.++.|.||..|+.+|..+.....-.... +.+...++.|.+|
T Consensus 598 teEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~im 677 (1157)
T KOG0386|consen 598 TEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIM 677 (1157)
T ss_pred cchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhH
Confidence 11 234789999999999999999999999999999999999999999999887543332222 4455668999999
Q ss_pred HHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEE
Q 003450 575 ELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERI 654 (819)
Q Consensus 575 ~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l 654 (819)
.||++|||||++...+......... ..++..+||+.+|+++|.+|++.||+||.|+|++.++++|++||..++++|.|+
T Consensus 678 qLRKiCNHP~lf~~ve~~~~~~~~~-~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRL 756 (1157)
T KOG0386|consen 678 QLRKLCNHPYLFANVENSYTLHYDI-KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRL 756 (1157)
T ss_pred HHHHhcCCchhhhhhccccccccCh-hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeee
Confidence 9999999999998776554332222 678899999999999999999999999999999999999999999999999999
Q ss_pred eccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEe
Q 003450 655 DGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLIT 734 (819)
Q Consensus 655 ~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~ 734 (819)
||++..++|...++.||.++++.|+||+||+|||.|+||+.||+||+||++|||..+.||..|+|||||+++|.|+|+++
T Consensus 757 DG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~t 836 (1157)
T KOG0386|consen 757 DGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLIT 836 (1157)
T ss_pred cCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhhHHHHhc
Q 003450 735 RGSIEERMMQMTKKKMVLEHLVVG 758 (819)
Q Consensus 735 ~~TvEe~i~~~~~~K~~l~~~v~~ 758 (819)
.+++||.|+..+..|+..+..|+.
T Consensus 837 v~sveE~il~~a~~Kl~~d~kviq 860 (1157)
T KOG0386|consen 837 VNSVEEKILAEAFYKLDVDGKVIQ 860 (1157)
T ss_pred hhHHHHHHHHHHHHhcCchHhhhh
Confidence 999999999999999999999984
No 9
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=8.7e-87 Score=737.36 Aligned_cols=624 Identities=51% Similarity=0.846 Sum_probs=534.1
Q ss_pred ccccccccccccCCCCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCCCc--ccccccccccccCcCC-C--CC-c
Q 003450 47 IDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLN--DIDKILDCEMRPTVAG-D--SD-V 120 (819)
Q Consensus 47 ~~~~~~~C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~~--~~~~il~~r~~p~~~~-~--~~-~ 120 (819)
+..+...|.+|+++|++++||.|+.+||.+|+.||+...|.++|.|+.|..+.+ .+++|+.|+++|.... + .. .
T Consensus 43 ~~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~~~~ 122 (696)
T KOG0383|consen 43 DDAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKNAGKIEKILGWRWKPTPKPREGNQGVI 122 (696)
T ss_pred chhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCCcccccccceeEecCCCCccccCcCcc
Confidence 345667899999999999999999999999999999999999999999966554 7899999999888744 2 11 1
Q ss_pred ccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhhhccCC-------------CC---chh-
Q 003450 121 SKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSSNN-------------NA---EED- 183 (819)
Q Consensus 121 ~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~-------------~~---~~~- 183 (819)
..........++|+|||+|.||+||.|.++.++.......+. -+..+........ .. ++.
T Consensus 123 ~~~~~~~~~~re~~vk~qg~s~~~c~~~~e~~~q~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~k~~~~a~~~~r~ 199 (696)
T KOG0383|consen 123 SPRRSNGIVEREFFVKWQGLSYWHCSWKSELLLQNPLNTLPV---ELQRKHDTDQKPEAEIGVTRDKGKLVPYADLEERF 199 (696)
T ss_pred CCcccccchhhhcccccccCCccchhHHHHHHhhhhcccchH---hhhhhhhcccCccccccccccCccccccccchhhh
Confidence 122334456799999999999999999999988754322111 1222211111100 00 111
Q ss_pred -hhccCCccchhhhHhhhh-cCCcceeeEeeecccccccccccCCC-CccccHHHHHHHHHHhhhccccccCccCCCCcc
Q 003450 184 -FVAIRPEWTTVDRILACR-GEDDEKEYLVKYKELSYDECYWEYES-DISAFQPEIERFIKIQSRSHRSSCNKQKSSPQD 260 (819)
Q Consensus 184 -~~~~~~~~~~~eril~~~-~~~~~~~~lvKw~~l~y~~~TWE~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (819)
...+.|+|..+.||+..+ ...++..|+|||+.|+|++++||.+. ++..++..+++|....... +..+.
T Consensus 200 ~~~~iKpe~~~i~rii~~~~s~~~~~~~~Vk~k~l~~d~~~~e~~~~~ip~~~~~~qe~~~~~~~~---~~~k~------ 270 (696)
T KOG0383|consen 200 LLYGIKPEWMPIARIINRRSSQKGATDYLVKWKELSYDEQEWEVEDPDIPGYSSAGQEAWHHREKP---TVSKD------ 270 (696)
T ss_pred hheeccccccccchhhhhhcccccceeeEeeeccCCccccCCCcCCCCcccCcccccccccccCcc---ccccc------
Confidence 123688999999999998 56678999999999999999999887 7777788887776532220 00000
Q ss_pred ccccCCCCcccccccCCCCCCC--CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCC--Cce
Q 003450 261 VTESTKKPKEFQQYEHSPEFLS--GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI--SPH 336 (819)
Q Consensus 261 ~~~~~~~~~~~~~~~~~p~~~~--~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~--~~~ 336 (819)
.. .........+..+|.++. ++.|.+||.+|++|++..|..+..+||||+||+|||++++.|+..+..... +|+
T Consensus 271 ~~--~~~~~~~v~~~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~ 348 (696)
T KOG0383|consen 271 LK--SNTVDDPVPYEDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPP 348 (696)
T ss_pred cc--ccccCCCCCcccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCc
Confidence 00 002344566778888876 589999999999999999999999999999999999999999999987653 499
Q ss_pred EEEecCcchHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhH
Q 003450 337 LVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEM 416 (819)
Q Consensus 337 LIv~P~~ll~qW~~e~~~~~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~ 416 (819)
|+++|.+++.+|.+++..|.|.+.++.|.|+...+..+++.++...+...+.. ............+|+|.+++|++
T Consensus 349 Lv~ap~sT~~nwe~e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~----~~i~~~~~~s~~k~~vl~~s~~~ 424 (696)
T KOG0383|consen 349 LVVAPLSTIVNWEREFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSS----PKISEMKTESSAKFHVLLPSYET 424 (696)
T ss_pred eeeccCccccCCCCchhccCCCcccccCCCCccchhhhhcccccccccccccC----CccccccchhhcccccCCCchhh
Confidence 99999999999999999999999999999999999999999998777643222 12222233455789999999999
Q ss_pred HhhcccccCCccceEEEecccccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHH
Q 003450 417 INLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEF 496 (819)
Q Consensus 417 l~~~~~~l~~~~~~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~ 496 (819)
...+...+.++.|.++|+||+|++||..++.+..+......++++|||||.+|++.||+++|+||.|+.|.+...|.+.|
T Consensus 425 ~~~~~~il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~ 504 (696)
T KOG0383|consen 425 IEIDQSILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEF 504 (696)
T ss_pred cccCHHHHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHH
Q 003450 497 KDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMEL 576 (819)
Q Consensus 497 ~~~~~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~l 576 (819)
.++...+.+..++.++.++++||.+.|+++.+|+|.+.++.+.|++.|+++|+.++.+++..+.. ++...+++|++|+|
T Consensus 505 ~d~~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~-~~~~~s~~n~~mel 583 (696)
T KOG0383|consen 505 HDISCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA-GVHQYSLLNIVMEL 583 (696)
T ss_pred chhhHHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh-cchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887 67778899999999
Q ss_pred HHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEec
Q 003450 577 RKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDG 656 (819)
Q Consensus 577 r~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G 656 (819)
||+|+|||+++..++...........++.+++|+..|.+++.++...||||+||+|++.++|+|++++...| .|.|+||
T Consensus 584 ~K~~~hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG 662 (696)
T KOG0383|consen 584 RKQCNHPYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDG 662 (696)
T ss_pred HHhhcCcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccC
Confidence 999999999999777777777888899999999999999999999999999999999999999999999999 9999999
Q ss_pred cCChHHHHHHHHHhcCCCCCcEEEEecccccccc
Q 003450 657 KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLG 690 (819)
Q Consensus 657 ~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~G 690 (819)
..+..+|+.+|++||.+++..|+||+||+|||.|
T Consensus 663 ~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 663 PITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred CccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 9999999999999999999999999999999988
No 10
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=8.3e-81 Score=695.98 Aligned_cols=452 Identities=38% Similarity=0.625 Sum_probs=395.2
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--------CCCceEEEecCcchHHHHHHHHHH
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--------RISPHLVVAPLSTLRNWEREFATW 355 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~--------~~~~~LIv~P~~ll~qW~~e~~~~ 355 (819)
.+||.||.+||+||.+....+-+|||||+||+|||+|++.+++.=... ...|.|||||.++..+|+.|+.+|
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHHHHHHh
Confidence 579999999999999999899999999999999999999988764322 234899999999999999999999
Q ss_pred cCCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEec
Q 003450 356 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (819)
Q Consensus 356 ~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvD 435 (819)
+|-++|..|.|....|..++.. ..+.+|+||+|+.+++|...+..+.|.++|+|
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q--------------------------~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLD 1107 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQ--------------------------YKNANIIVTSYDVVRNDVDYLIKIDWNYCVLD 1107 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhh--------------------------ccccceEEeeHHHHHHHHHHHHhcccceEEec
Confidence 9999999999999999876652 24678999999999999999999999999999
Q ss_pred ccccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccc---------------
Q 003450 436 EGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN--------------- 500 (819)
Q Consensus 436 EaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~--------------- 500 (819)
|.|-+||..++++++++.+.+.+|+.|||||+|||+.|||+|++||.|+++|+.+.|.++|....
T Consensus 1108 EGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~Ea 1187 (1549)
T KOG0392|consen 1108 EGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEA 1187 (1549)
T ss_pred CcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999996421
Q ss_pred hHHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHh-------cCC-CcchHHHH
Q 003450 501 QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTR-------RGG-AQISLINV 572 (819)
Q Consensus 501 ~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~-------~~~-~~~~~~~~ 572 (819)
..-.++.||+.+-||++||+|+||+.+||||..+-.+|+|++.|+++|+.+..+....... ..+ .....+..
T Consensus 1188 G~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqa 1267 (1549)
T KOG0392|consen 1188 GVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQA 1267 (1549)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHH
Confidence 1245788999999999999999999999999999999999999999999998873222211 111 13457788
Q ss_pred HHHHHHhcCCCcccCCC-CCCccCcHH------HHHHhhhcCchHHHHHHHHHHHHh--------------cCceEEEEe
Q 003450 573 VMELRKLCCHPYMLEGV-EPDIEDTNE------SFKQLLESSGKLQLLDKMMVKLKE--------------QGHRVLIYS 631 (819)
Q Consensus 573 ~~~lr~~~~hp~l~~~~-~~~~~~~~~------~~~~l~~~s~Kl~~l~~ll~~l~~--------------~g~kvlIFs 631 (819)
+..+|+.|+||.|+... .++...... ..-+-+..|+|+.+|.++|....- .+||+||||
T Consensus 1268 LqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFc 1347 (1549)
T KOG0392|consen 1268 LQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFC 1347 (1549)
T ss_pred HHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEee
Confidence 99999999999998653 233221111 111226789999999999987531 369999999
Q ss_pred cchhHHHHHHHHHhhC---CCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCc
Q 003450 632 QFQHMLDLLEDYLTFK---KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNP 708 (819)
Q Consensus 632 ~~~~~ld~L~~~L~~~---g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp 708 (819)
|+..++|++++-|-.. .+.|.|+||++++.+|++++.+||++++- -|+|++|.+||.|+||++||||||++-+|||
T Consensus 1348 QlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptI-DvLlLTThVGGLGLNLTGADTVVFvEHDWNP 1426 (1549)
T KOG0392|consen 1348 QLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTI-DVLLLTTHVGGLGLNLTGADTVVFVEHDWNP 1426 (1549)
T ss_pred eHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCce-eEEEEeeeccccccccCCCceEEEEecCCCc
Confidence 9999999999888544 56688999999999999999999997664 4599999999999999999999999999999
Q ss_pred chHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhhHHHHhchhhh
Q 003450 709 HADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKA 762 (819)
Q Consensus 709 ~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~~K~~l~~~v~~~~~~ 762 (819)
.++.||++|||||||++.|.||||||+||+||+|+-+++-|+..++.|++..++
T Consensus 1427 MrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNa 1480 (1549)
T KOG0392|consen 1427 MRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNA 1480 (1549)
T ss_pred hhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999965443
No 11
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=3.6e-71 Score=617.94 Aligned_cols=455 Identities=35% Similarity=0.550 Sum_probs=382.6
Q ss_pred CCCchhHHHHHHHHHHhhc------CCCceEEEcCCCCcHHHHHHHHHHHHhcCCC------CceEEEecCcchHHHHHH
Q 003450 284 GSLHPYQLEGLNFLRFSWS------KQTHVILADEMGLGKTIQSIAFLASLFGERI------SPHLVVAPLSTLRNWERE 351 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~------~~~~~iLade~GlGKT~~~i~~l~~l~~~~~------~~~LIv~P~~ll~qW~~e 351 (819)
..|||||.+|++||+.+.. ..+|||+||+||+|||+++|+++..+++..+ .+.|||||.+++.+|++|
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkkE 316 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKKE 316 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHHH
Confidence 5799999999999987764 4468999999999999999999999987643 478999999999999999
Q ss_pred HHHHcC--CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccc
Q 003450 352 FATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (819)
Q Consensus 352 ~~~~~p--~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~ 429 (819)
|.+|.. .+....++|...+ .++....+..-. ......-|++.+|++++.+...+....+
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~-~w~~~~sil~~~------------------~~~~~~~vli~sye~~~~~~~~il~~~~ 377 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKS-SWIKLKSILFLG------------------YKQFTTPVLIISYETASDYCRKILLIRP 377 (776)
T ss_pred HHHhccccccceeeeecccch-hhhhhHHHHHhh------------------hhheeEEEEeccHHHHHHHHHHHhcCCC
Confidence 999985 6788888888775 222211111000 0113446999999999999999999999
Q ss_pred eEEEecccccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccc---------
Q 003450 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN--------- 500 (819)
Q Consensus 430 ~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~--------- 500 (819)
+++|+||+|++||..+.++++|..+.+++||+|||||+||++.|+|++++|.+|+.+++...|...|....
T Consensus 378 glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s 457 (776)
T KOG0390|consen 378 GLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADAS 457 (776)
T ss_pred CeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999885322
Q ss_pred -----hHHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHH
Q 003450 501 -----QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVME 575 (819)
Q Consensus 501 -----~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~ 575 (819)
....+.+|..+...|++||+.+...+.||++.+++|.|.+++.|+.+|+.+.... ... ...+ ..+..+..
T Consensus 458 ~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~~-~~~~---~~l~~~~~ 532 (776)
T KOG0390|consen 458 EEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KMR-TLKG---YALELITK 532 (776)
T ss_pred hhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hhh-hhhc---chhhHHHH
Confidence 1344888999999999999998999999999999999999999999999998864 111 1111 15667788
Q ss_pred HHHhcCCCcccCCCCCCcc-----CcHHHH--------HHhhhcCchHHHHHHHHHHHHhc-CceEEEEecchhHHHHHH
Q 003450 576 LRKLCCHPYMLEGVEPDIE-----DTNESF--------KQLLESSGKLQLLDKMMVKLKEQ-GHRVLIYSQFQHMLDLLE 641 (819)
Q Consensus 576 lr~~~~hp~l~~~~~~~~~-----~~~~~~--------~~l~~~s~Kl~~l~~ll~~l~~~-g~kvlIFs~~~~~ld~L~ 641 (819)
|+++|+||.|+...+.... ...... ..-...|+|+..|..++....+. -.++.+.++++.++++++
T Consensus 533 L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e 612 (776)
T KOG0390|consen 533 LKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFE 612 (776)
T ss_pred HHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHH
Confidence 9999999999852211110 000000 01122478999999998666543 346667778899999999
Q ss_pred HHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhc
Q 003450 642 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (819)
Q Consensus 642 ~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~ 721 (819)
..++.+|+.+.++||+++..+|+.+|+.||++.+..+|||+|++|||+||||.+|++||+||++|||+++.||++||+|.
T Consensus 613 ~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~Rd 692 (776)
T KOG0390|consen 613 QLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRD 692 (776)
T ss_pred HHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccC
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEEeCCCHHHHHHHHHHHhhhhHHHHhchhhh
Q 003450 722 GQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKA 762 (819)
Q Consensus 722 Gq~~~V~v~~li~~~TvEe~i~~~~~~K~~l~~~v~~~~~~ 762 (819)
||+++|+||||++.||+||+||+++..|..+...|++.-..
T Consensus 693 GQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~ 733 (776)
T KOG0390|consen 693 GQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEEED 733 (776)
T ss_pred CCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecccc
Confidence 99999999999999999999999999999999999865433
No 12
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=7.4e-66 Score=527.88 Aligned_cols=455 Identities=31% Similarity=0.500 Sum_probs=372.1
Q ss_pred ccCCCCCCCCCCCchhHHHHHHHHHHhhc-CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHH
Q 003450 274 YEHSPEFLSGGSLHPYQLEGLNFLRFSWS-KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (819)
Q Consensus 274 ~~~~p~~~~~~~L~~~Q~~~v~~l~~~~~-~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~ 352 (819)
-..||..+. ..|-|||++++.|+..... .-.|||||||||.|||+|+|+++.. +-...|+|||||...+.||.+||
T Consensus 174 ~aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla--e~~ra~tLVvaP~VAlmQW~nEI 250 (791)
T KOG1002|consen 174 RAEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA--EVDRAPTLVVAPTVALMQWKNEI 250 (791)
T ss_pred cccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh--ccccCCeeEEccHHHHHHHHHHH
Confidence 345565554 6799999999999966544 5689999999999999999999887 33455999999999999999999
Q ss_pred HHHcC-CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc-----------
Q 003450 353 ATWAP-QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----------- 420 (819)
Q Consensus 353 ~~~~p-~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~----------- 420 (819)
.+++. .+++.+|+|.+..... + ....+|||+|||..+...
T Consensus 251 ~~~T~gslkv~~YhG~~R~~ni-k---------------------------el~~YDvVLTty~vvEs~yRk~~~GfrrK 302 (791)
T KOG1002|consen 251 ERHTSGSLKVYIYHGAKRDKNI-K---------------------------ELMNYDVVLTTYAVVESVYRKQDYGFRRK 302 (791)
T ss_pred HHhccCceEEEEEecccccCCH-H---------------------------HhhcCcEEEEecHHHHHHHHhcccccccc
Confidence 99985 5899999998766532 1 236899999999887431
Q ss_pred ------ccccCCccceEEEecccccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChH----
Q 003450 421 ------SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLE---- 490 (819)
Q Consensus 421 ------~~~l~~~~~~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~---- 490 (819)
.+.|.+++|-.||+||||.+|+..+...+++..+.+.+||+|||||+||.+.|||+|++||+.++|.-+-
T Consensus 303 ngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~c 382 (791)
T KOG1002|consen 303 NGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKC 382 (791)
T ss_pred CCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhc
Confidence 3446778999999999999999999999999999999999999999999999999999999988863210
Q ss_pred -----H--HH-------------HHH---hc-----c-------chHHHHHHHHHHHhhHHHHHhhhhhhh--cCCCceE
Q 003450 491 -----E--FQ-------------EEF---KD-----I-------NQEEQISRLHRMLAPHLLRRVKKDVMK--ELPPKKE 533 (819)
Q Consensus 491 -----~--f~-------------~~~---~~-----~-------~~~~~~~~l~~~l~~~~lrr~k~dv~~--~lp~~~~ 533 (819)
. |. ..+ .. + .........+.+++.+|+||+|-.-.. .|||...
T Consensus 383 dc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv 462 (791)
T KOG1002|consen 383 DCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIV 462 (791)
T ss_pred cccccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccce
Confidence 0 00 000 00 0 012345578899999999999965433 5899988
Q ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHhc------CCCcchHHHHHHHHHHhcCCCcccCCCCC----------------
Q 003450 534 LILRVELSSKQKEYYKAILTRNYQILTRR------GGAQISLINVVMELRKLCCHPYMLEGVEP---------------- 591 (819)
Q Consensus 534 ~~v~~~ls~~q~~~y~~i~~~~~~~l~~~------~~~~~~~~~~~~~lr~~~~hp~l~~~~~~---------------- 591 (819)
.+..--++.+++.+|+.+.......++.. -.+..+++..+.++||..+||+|+-....
T Consensus 463 ~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc 542 (791)
T KOG1002|consen 463 TVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLC 542 (791)
T ss_pred eeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeeccc
Confidence 88888899999999999988766555432 23455678889999999999998732100
Q ss_pred -Cc-----cC-------------------------------------cHHH--------H----------HHhhhcCchH
Q 003450 592 -DI-----ED-------------------------------------TNES--------F----------KQLLESSGKL 610 (819)
Q Consensus 592 -~~-----~~-------------------------------------~~~~--------~----------~~l~~~s~Kl 610 (819)
+. .. .... + ..-+..|.|+
T Consensus 543 ~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKI 622 (791)
T KOG1002|consen 543 HDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKI 622 (791)
T ss_pred CChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHH
Confidence 00 00 0000 0 0114468899
Q ss_pred HHHHHHHHHHHhcC--ceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEecccccc
Q 003450 611 QLLDKMMVKLKEQG--HRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGG 688 (819)
Q Consensus 611 ~~l~~ll~~l~~~g--~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~ 688 (819)
++|.+-|..+.++. -|.||||||+.++|.|.-.|...|+....+.|+|++..|..+|+.|.++. +..|||+|.+|||
T Consensus 623 EAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~-~c~vfLvSLkAGG 701 (791)
T KOG1002|consen 623 EALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDI-DCRVFLVSLKAGG 701 (791)
T ss_pred HHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCC-CeEEEEEEeccCc
Confidence 99999999888764 48999999999999999999999999999999999999999999998855 4556999999999
Q ss_pred ccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhhHHHHhchh
Q 003450 689 LGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRL 760 (819)
Q Consensus 689 ~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~~K~~l~~~v~~~~ 760 (819)
+.+||+.|++|+++||+|||+...|+.+|+|||||.++|.|.+|+.++||||+|++++++|..++++.+|..
T Consensus 702 VALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qd 773 (791)
T KOG1002|consen 702 VALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQD 773 (791)
T ss_pred eEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998764
No 13
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.1e-64 Score=537.91 Aligned_cols=463 Identities=29% Similarity=0.517 Sum_probs=380.7
Q ss_pred cCCCCCCCCCCCchhHHHHHHHHHHhhc-CCCceEEEcCCCCcHHHHHHHHHHHHhcC-----C----CCceEEEecCcc
Q 003450 275 EHSPEFLSGGSLHPYQLEGLNFLRFSWS-KQTHVILADEMGLGKTIQSIAFLASLFGE-----R----ISPHLVVAPLST 344 (819)
Q Consensus 275 ~~~p~~~~~~~L~~~Q~~~v~~l~~~~~-~~~~~iLade~GlGKT~~~i~~l~~l~~~-----~----~~~~LIv~P~~l 344 (819)
...|.... ..|.|||..|+.||..... .+.|+||+|+||+|||+++|+++.+-... + ..++|||||.++
T Consensus 316 te~P~g~~-v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaSl 394 (901)
T KOG4439|consen 316 TETPDGLK-VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPASL 394 (901)
T ss_pred cCCCCcce-eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHHH
Confidence 34444443 6799999999999954433 46799999999999999999999876421 1 127999999999
Q ss_pred hHHHHHHHHHHcC--CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhh---
Q 003450 345 LRNWEREFATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL--- 419 (819)
Q Consensus 345 l~qW~~e~~~~~p--~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~--- 419 (819)
+.||..|+.+-.. .+.|.+|||+.. |.. . .....+||||||||..+..
T Consensus 395 i~qW~~Ev~~rl~~n~LsV~~~HG~n~-r~i-~-------------------------~~~L~~YDvViTTY~lva~~~~ 447 (901)
T KOG4439|consen 395 IHQWEAEVARRLEQNALSVYLYHGPNK-REI-S-------------------------AKELRKYDVVITTYNLVANKPD 447 (901)
T ss_pred HHHHHHHHHHHHhhcceEEEEecCCcc-ccC-C-------------------------HHHHhhcceEEEeeeccccCCc
Confidence 9999999987663 589999999975 211 1 1122579999999998865
Q ss_pred -------cccccCCccceEEEecccccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHH
Q 003450 420 -------DSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEF 492 (819)
Q Consensus 420 -------~~~~l~~~~~~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f 492 (819)
....+..+.|..||+||||.+||..++...++..+.+..||+|||||+||+..|+|+|+.||...+|++...|
T Consensus 448 ~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~W 527 (901)
T KOG4439|consen 448 DELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQW 527 (901)
T ss_pred hhhhcccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHH
Confidence 2445667899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhccchHHHHHHHHHHHhhHHHHHhhhhhhh-----cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHh------
Q 003450 493 QEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMK-----ELPPKKELILRVELSSKQKEYYKAILTRNYQILTR------ 561 (819)
Q Consensus 493 ~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~dv~~-----~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~------ 561 (819)
.+...... .....++.-+.++.+|||+|..... .||.+...++.++|+..+...|.-+.......+..
T Consensus 528 ke~i~~~s-~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e 606 (901)
T KOG4439|consen 528 KENIDNMS-KGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQRE 606 (901)
T ss_pred HHhccCcc-ccchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 88765322 2345567778899999999987655 79999999999999999999999887765554422
Q ss_pred ----cCC---------------C-----------------cchHHHHHHHHHHhcCCCcccCCCCCCc------------
Q 003450 562 ----RGG---------------A-----------------QISLINVVMELRKLCCHPYMLEGVEPDI------------ 593 (819)
Q Consensus 562 ----~~~---------------~-----------------~~~~~~~~~~lr~~~~hp~l~~~~~~~~------------ 593 (819)
..+ + ...++..+.+|||+|.||.+........
T Consensus 607 ~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde 686 (901)
T KOG4439|consen 607 DRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDE 686 (901)
T ss_pred hhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhh
Confidence 000 0 0114678899999999997654321100
Q ss_pred cC----------------------------cHHHHHHhhhcCchHHHHHHHHHHH-HhcCceEEEEecchhHHHHHHHHH
Q 003450 594 ED----------------------------TNESFKQLLESSGKLQLLDKMMVKL-KEQGHRVLIYSQFQHMLDLLEDYL 644 (819)
Q Consensus 594 ~~----------------------------~~~~~~~l~~~s~Kl~~l~~ll~~l-~~~g~kvlIFs~~~~~ld~L~~~L 644 (819)
.. ....+-.....|.|+..+..+++.+ ....+|++|.||++.+|+++...|
T Consensus 687 ~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi 766 (901)
T KOG4439|consen 687 EQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHI 766 (901)
T ss_pred hhhhhhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHH
Confidence 00 0011112234688999999999887 556789999999999999999999
Q ss_pred hhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCC
Q 003450 645 TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT 724 (819)
Q Consensus 645 ~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~ 724 (819)
...|+.|..++|.+...+|+.+++.||....+..|+|+|..|||+||||.+|+|+|++|..|||+...||..|++|+||+
T Consensus 767 ~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQk 846 (901)
T KOG4439|consen 767 QKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQK 846 (901)
T ss_pred hhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999998888888999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEeCCCHHHHHHHHHHHhhhhHHHHhchhhhcccc
Q 003450 725 NKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNIN 766 (819)
Q Consensus 725 ~~V~v~~li~~~TvEe~i~~~~~~K~~l~~~v~~~~~~~~~~ 766 (819)
|+|.||||++.||+|++|..++..|..++..|+.+-....++
T Consensus 847 K~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr~~~ 888 (901)
T KOG4439|consen 847 KDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATRKMN 888 (901)
T ss_pred CceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccccccc
Confidence 999999999999999999999999999999998654443333
No 14
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=3.3e-64 Score=547.33 Aligned_cols=451 Identities=33% Similarity=0.522 Sum_probs=367.9
Q ss_pred CCCchhHHHHHHHHHHhh---------cCCCceEEEcCCCCcHHHHHHHHHHHHhc---CCCCceEEEecCcchHHHHHH
Q 003450 284 GSLHPYQLEGLNFLRFSW---------SKQTHVILADEMGLGKTIQSIAFLASLFG---ERISPHLVVAPLSTLRNWERE 351 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~---------~~~~~~iLade~GlGKT~~~i~~l~~l~~---~~~~~~LIv~P~~ll~qW~~e 351 (819)
..|+|||..||.||+.+. ..|-|||||+-||||||+|+++|+..++- .+.+.+|||||.+++.||.+|
T Consensus 667 ~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~E 746 (1567)
T KOG1015|consen 667 IKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNE 746 (1567)
T ss_pred hhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHH
Confidence 579999999999995433 35779999999999999999999988753 355699999999999999999
Q ss_pred HHHHcCCCe------EEEEec--ChhHH-HHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--
Q 003450 352 FATWAPQMN------VVMYVG--TSQAR-NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD-- 420 (819)
Q Consensus 352 ~~~~~p~~~------v~~~~g--~~~~r-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~-- 420 (819)
|.+|.+++. |..+.. ....| ..+..+ . ..-.|+|+-|++++..
T Consensus 747 FekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W-----------------------~---~~ggVmIiGYdmyRnLa~ 800 (1567)
T KOG1015|consen 747 FEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRW-----------------------Q---EDGGVMIIGYDMYRNLAQ 800 (1567)
T ss_pred HHHhcccccccccceeehhhhccChHHHHHHHHHH-----------------------H---hcCCEEEEehHHHHHHhc
Confidence 999998532 222211 11111 112221 0 1236999999998643
Q ss_pred -------------ccccCCccceEEEecccccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCC
Q 003450 421 -------------SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFG 487 (819)
Q Consensus 421 -------------~~~l~~~~~~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~ 487 (819)
...+..-..|+||+||+|-+||..+.+.+++..+.+.+||+|||||+|||+.|+|.+++|+.|+.++
T Consensus 801 gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLG 880 (1567)
T KOG1015|consen 801 GRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLG 880 (1567)
T ss_pred ccchhhhHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhccccccc
Confidence 1123334689999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhccchH---------------HHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHH
Q 003450 488 SLEEFQEEFKDINQE---------------EQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAIL 552 (819)
Q Consensus 488 ~~~~f~~~~~~~~~~---------------~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~ 552 (819)
+..+|..+|.+..+. ....-|++.|+.++-|+-...+.+.|||+.+++|.+.||+.|..+|..++
T Consensus 881 s~~EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL 960 (1567)
T KOG1015|consen 881 SIKEFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYL 960 (1567)
T ss_pred CcHHHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHH
Confidence 999999999764321 23456889999999998888888999999999999999999999999988
Q ss_pred HHHHHHHH---hcCCCcchHHHHHHHHHHhcCCCcccCCC-------------C--CCc---------------------
Q 003450 553 TRNYQILT---RRGGAQISLINVVMELRKLCCHPYMLEGV-------------E--PDI--------------------- 593 (819)
Q Consensus 553 ~~~~~~l~---~~~~~~~~~~~~~~~lr~~~~hp~l~~~~-------------~--~~~--------------------- 593 (819)
......-. ++.+....++.-+..|+++.+||+...-. . ..+
T Consensus 961 ~h~~~~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~k 1040 (1567)
T KOG1015|consen 961 DHLTGVGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKK 1040 (1567)
T ss_pred hhccccCCccccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhccc
Confidence 73221111 12234456888899999999999864100 0 000
Q ss_pred ------------------------------------------cCcHH---------------------HH--------HH
Q 003450 594 ------------------------------------------EDTNE---------------------SF--------KQ 602 (819)
Q Consensus 594 ------------------------------------------~~~~~---------------------~~--------~~ 602 (819)
...+. -+ ..
T Consensus 1041 s~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~ 1120 (1567)
T KOG1015|consen 1041 SGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAE 1120 (1567)
T ss_pred ccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhh
Confidence 00000 00 11
Q ss_pred hhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhh----------------------CCCeEEEEeccCCh
Q 003450 603 LLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF----------------------KKWQYERIDGKVGG 660 (819)
Q Consensus 603 l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~----------------------~g~~~~~l~G~~~~ 660 (819)
.+..|+|+.+|.+||....+-|.|+|||||....||+|+.+|.. .|..|.+|||+++.
T Consensus 1121 v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s 1200 (1567)
T KOG1015|consen 1121 VLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTS 1200 (1567)
T ss_pred hhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccH
Confidence 23469999999999999999999999999999999999999952 26689999999999
Q ss_pred HHHHHHHHHhcCCCCCc-EEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHH
Q 003450 661 AERQIRIDRFNAKNSSR-FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (819)
Q Consensus 661 ~~R~~~i~~F~~~~~~~-~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvE 739 (819)
.+|+++.++||++.+-+ .+|||||+||+.||||-+||.|||||..|||.-+.|+|-|++|.||+|+|+||||++.||+|
T Consensus 1201 ~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmE 1280 (1567)
T KOG1015|consen 1201 QSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTME 1280 (1567)
T ss_pred HHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHH
Confidence 99999999999876643 46899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHhchh
Q 003450 740 ERMMQMTKKKMVLEHLVVGRL 760 (819)
Q Consensus 740 e~i~~~~~~K~~l~~~v~~~~ 760 (819)
|+||.++-.|..+...|++..
T Consensus 1281 eKIYkRQVTKqsls~RVVDeq 1301 (1567)
T KOG1015|consen 1281 EKIYKRQVTKQSLSFRVVDEQ 1301 (1567)
T ss_pred HHHHHHHHhHhhhhhhhhhHH
Confidence 999999999999999998654
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=2.2e-60 Score=584.66 Aligned_cols=457 Identities=44% Similarity=0.732 Sum_probs=399.0
Q ss_pred CCCCCCchhHHHHHHHHH-HhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC---CCceEEEecCcchHHHHHHHHHHc
Q 003450 281 LSGGSLHPYQLEGLNFLR-FSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLRNWEREFATWA 356 (819)
Q Consensus 281 ~~~~~L~~~Q~~~v~~l~-~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~---~~~~LIv~P~~ll~qW~~e~~~~~ 356 (819)
....+|+|||.+|++|+. .....+.++||||+||+|||+|+++++.+++... .+|+|||||.+++.+|.+|+.+|.
T Consensus 334 ~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~~ 413 (866)
T COG0553 334 DLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFA 413 (866)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhhC
Confidence 334689999999999998 7888899999999999999999999998855432 359999999999999999999999
Q ss_pred CCCe-EEEEecChhH----HHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhh---cccccCCcc
Q 003450 357 PQMN-VVMYVGTSQA----RNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL---DSASLKPIK 428 (819)
Q Consensus 357 p~~~-v~~~~g~~~~----r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~---~~~~l~~~~ 428 (819)
|.++ +..++|.... +..+..+... .. ...++++++||+.+.. +...+..+.
T Consensus 414 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------------------~~--~~~~~v~itty~~l~~~~~~~~~l~~~~ 472 (866)
T COG0553 414 PDLRLVLVYHGEKSELDKKREALRDLLKL-------------------HL--VIIFDVVITTYELLRRFLVDHGGLKKIE 472 (866)
T ss_pred ccccceeeeeCCcccccHHHHHHHHHhhh-------------------cc--cceeeEEechHHHHHHhhhhHHHHhhce
Confidence 9999 9999998863 4433332100 00 1348999999999999 999999999
Q ss_pred ceEEEecccccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhc-ccCCCCCC-ChHHHHHHHhccc------
Q 003450 429 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH-FLDAGKFG-SLEEFQEEFKDIN------ 500 (819)
Q Consensus 429 ~~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~-~l~~~~~~-~~~~f~~~~~~~~------ 500 (819)
|+.+|+||||++||..+..++++..+++.++++|||||++|++.|||++++ |+.|+.++ +...|...|....
T Consensus 473 ~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~ 552 (866)
T COG0553 473 WDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDI 552 (866)
T ss_pred eeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccc
Confidence 999999999999999999999999999999999999999999999999999 99999999 5588888886432
Q ss_pred -----hHHHHHHHHHHHhhHHHHHhhhh--hhhcCCCceEEEEEecCCHHHHHHHHHHHH---HHHHHHHhcCC------
Q 003450 501 -----QEEQISRLHRMLAPHLLRRVKKD--VMKELPPKKELILRVELSSKQKEYYKAILT---RNYQILTRRGG------ 564 (819)
Q Consensus 501 -----~~~~~~~l~~~l~~~~lrr~k~d--v~~~lp~~~~~~v~~~ls~~q~~~y~~i~~---~~~~~l~~~~~------ 564 (819)
....+..|+..++|+++||++.+ +...+|++.+.++.|++++.|..+|+.... +....+.....
T Consensus 553 ~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (866)
T COG0553 553 GPLEARELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDEN 632 (866)
T ss_pred cchhhHHHHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 12344558899999999999999 888999999999999999999999999999 66655544211
Q ss_pred ----CcchHHHHHHHHHHhcCCCcccCCC-CCCccC----------cHHHHHHhhhcC-chHHHHHHHH-HHHHhcCc--
Q 003450 565 ----AQISLINVVMELRKLCCHPYMLEGV-EPDIED----------TNESFKQLLESS-GKLQLLDKMM-VKLKEQGH-- 625 (819)
Q Consensus 565 ----~~~~~~~~~~~lr~~~~hp~l~~~~-~~~~~~----------~~~~~~~l~~~s-~Kl~~l~~ll-~~l~~~g~-- 625 (819)
....+++.++.+|++|+||.++... +..... .......++..+ +|+..+.+++ ..+..+|+
T Consensus 633 ~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~ 712 (866)
T COG0553 633 RIGDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYH 712 (866)
T ss_pred cccchhhHHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccc
Confidence 1567889999999999999999876 322211 111123355677 9999999999 89999999
Q ss_pred eEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCC
Q 003450 626 RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD 705 (819)
Q Consensus 626 kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~ 705 (819)
++|||+||+.++++|+.+|...++.+.+++|+++..+|+.++++|+++ ....+|++++++||.||||++|++||+||++
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~ 791 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPW 791 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEeccc
Confidence 999999999999999999999999999999999999999999999987 4566799999999999999999999999999
Q ss_pred CCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhhHHHHhch
Q 003450 706 WNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGR 759 (819)
Q Consensus 706 wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~~K~~l~~~v~~~ 759 (819)
|||+.+.||++|+||+||+++|.||++++++|+||+|++++..|+.+...+++.
T Consensus 792 wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~ 845 (866)
T COG0553 792 WNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDA 845 (866)
T ss_pred cChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999875
No 16
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-57 Score=467.36 Aligned_cols=409 Identities=26% Similarity=0.412 Sum_probs=329.7
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHcCCCeE-EE
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNV-VM 363 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~p~~~v-~~ 363 (819)
.|.|||++|++|. ...|++++|||+||+|||+|||+++.++..++ |.|||||.++...|.+++.+|+|.... .+
T Consensus 198 ~LlPFQreGv~fa---L~RgGR~llADeMGLGKTiQAlaIA~yyraEw--plliVcPAsvrftWa~al~r~lps~~pi~v 272 (689)
T KOG1000|consen 198 RLLPFQREGVIFA---LERGGRILLADEMGLGKTIQALAIARYYRAEW--PLLIVCPASVRFTWAKALNRFLPSIHPIFV 272 (689)
T ss_pred hhCchhhhhHHHH---HhcCCeEEEecccccchHHHHHHHHHHHhhcC--cEEEEecHHHhHHHHHHHHHhcccccceEE
Confidence 5999999999875 47899999999999999999999999886654 999999999999999999999986544 22
Q ss_pred EecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccccccCc
Q 003450 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNK 443 (819)
Q Consensus 364 ~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~~kn~ 443 (819)
..+..+.- ........|.|+||+++......+..-+|.+||+||+|.+|+.
T Consensus 273 v~~~~D~~-----------------------------~~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~s 323 (689)
T KOG1000|consen 273 VDKSSDPL-----------------------------PDVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDS 323 (689)
T ss_pred EecccCCc-----------------------------cccccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhcc
Confidence 22222110 0011234699999999999999999989999999999999999
Q ss_pred ccHHHHHHHhc--ccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccc---------hHHHHHHHHHHH
Q 003450 444 DSKLFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN---------QEEQISRLHRML 512 (819)
Q Consensus 444 ~s~~~~~l~~l--~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~---------~~~~~~~l~~~l 512 (819)
.++..+++..+ ...+.|||||||-...+.|||.++..+++..|+++.+|..+|.+.. .-.+..+|+-++
T Consensus 324 ktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL 403 (689)
T KOG1000|consen 324 KTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALL 403 (689)
T ss_pred chhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHH
Confidence 99999988877 5789999999999999999999999999999999999999997643 335677888877
Q ss_pred hh-HHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCC
Q 003450 513 AP-HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (819)
Q Consensus 513 ~~-~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~ 591 (819)
.. .|+||+|.+++.+||+|...++. .....+-+...++.....+.. ........-...++..++
T Consensus 404 ~k~lMIRRlK~dvL~qLPpKrr~Vv~-~~~gr~da~~~~lv~~a~~~t-~~~~~e~~~~~l~l~y~~------------- 468 (689)
T KOG1000|consen 404 FKRLMIRRLKADVLKQLPPKRREVVY-VSGGRIDARMDDLVKAAADYT-KVNSMERKHESLLLFYSL------------- 468 (689)
T ss_pred HHHHHHHHHHHHHHhhCCccceEEEE-EcCCccchHHHHHHHHhhhcc-hhhhhhhhhHHHHHHHHH-------------
Confidence 55 58999999999999999555544 444444444444443322200 000000000111111111
Q ss_pred CccCcHHHHHHhhhcCchHHHHHHHHHH----HHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHH
Q 003450 592 DIEDTNESFKQLLESSGKLQLLDKMMVK----LKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (819)
Q Consensus 592 ~~~~~~~~~~~l~~~s~Kl~~l~~ll~~----l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i 667 (819)
..-.|+..+.+.|.. ..+.+.|++||+++..++|-|+.++..+++...||||+++..+|+.++
T Consensus 469 -------------tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~ 535 (689)
T KOG1000|consen 469 -------------TGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLC 535 (689)
T ss_pred -------------hcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHH
Confidence 133466666666655 345678999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 003450 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 747 (819)
Q Consensus 668 ~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~ 747 (819)
+.|+..+. ..|-++|..|+|+||+|++|+.|+|.+.+|||...+||.+|+||+||+..|.||+|++++|+||.+|..+.
T Consensus 536 qsFQ~see-v~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~ 614 (689)
T KOG1000|consen 536 QSFQTSEE-VRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQ 614 (689)
T ss_pred HHhccccc-eEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHH
Confidence 99998554 45579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHH
Q 003450 748 KKMVLEHLV 756 (819)
Q Consensus 748 ~K~~l~~~v 756 (819)
+|+.....+
T Consensus 615 ~KL~vl~s~ 623 (689)
T KOG1000|consen 615 QKLDVLGSV 623 (689)
T ss_pred HHHHHHhhc
Confidence 999877665
No 17
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2e-54 Score=506.33 Aligned_cols=416 Identities=20% Similarity=0.277 Sum_probs=318.0
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEecCcchHHHHHHHHHHcCCCeEE
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNVV 362 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~-~~~~LIv~P~~ll~qW~~e~~~~~p~~~v~ 362 (819)
..|.|||+..+..+.. ....++|||||||+|||++|++++..+...+ .+|+|||||.+|+.||..|+.+++ ++...
T Consensus 151 ~~l~pHQl~~~~~vl~--~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~sL~~QW~~El~~kF-~l~~~ 227 (956)
T PRK04914 151 ASLIPHQLYIAHEVGR--RHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPETLQHQWLVEMLRRF-NLRFS 227 (956)
T ss_pred CCCCHHHHHHHHHHhh--ccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCHHHHHHHHHHHHHHh-CCCeE
Confidence 5699999999876533 3467899999999999999999998876554 469999999999999999998877 66777
Q ss_pred EEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc---cccCCccceEEEeccccc
Q 003450 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQCMIVDEGHR 439 (819)
Q Consensus 363 ~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~---~~l~~~~~~~lIvDEaH~ 439 (819)
++.+....... . . .......++++|+||+.+..+. ..+....|++|||||||+
T Consensus 228 i~~~~~~~~~~--~------~----------------~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~ 283 (956)
T PRK04914 228 LFDEERYAEAQ--H------D----------------ADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHH 283 (956)
T ss_pred EEcCcchhhhc--c------c----------------ccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhh
Confidence 77655322110 0 0 0011235689999999998643 446667999999999999
Q ss_pred ccCc---ccHHHHHHHhc--ccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccc--------------
Q 003450 440 LKNK---DSKLFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN-------------- 500 (819)
Q Consensus 440 ~kn~---~s~~~~~l~~l--~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~-------------- 500 (819)
+++. .+..++.+..+ +++++|+|||||++|+..|+|+++++|+|+.|++...|.++.....
T Consensus 284 lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~ 363 (956)
T PRK04914 284 LVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEK 363 (956)
T ss_pred hccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCc
Confidence 9853 46678888877 5779999999999999999999999999999999999976443100
Q ss_pred -hHHHHHHHHHH---------------------------Hh---------hHHHHHhhhhhhhcCCCceEEEEEecCCHH
Q 003450 501 -QEEQISRLHRM---------------------------LA---------PHLLRRVKKDVMKELPPKKELILRVELSSK 543 (819)
Q Consensus 501 -~~~~~~~l~~~---------------------------l~---------~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~ 543 (819)
.......|..+ ++ ..++|++++++. .+|....+.+.+++++.
T Consensus 364 ~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~ 442 (956)
T PRK04914 364 LSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQ 442 (956)
T ss_pred CCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHH
Confidence 01111122111 11 345677777765 68999999999999765
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcc-cCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHh
Q 003450 544 QKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM-LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKE 622 (819)
Q Consensus 544 q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l-~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~ 622 (819)
....+..... . .+++. .+|.. +... .........++|+..|.++|....
T Consensus 443 y~~~~~~~~~---~-----------------~~~~~-l~pe~~~~~~--------~~~~~~~~~d~Ki~~L~~~L~~~~- 492 (956)
T PRK04914 443 YQTAIKVSLE---A-----------------RARDM-LYPEQIYQEF--------EDNATWWNFDPRVEWLIDFLKSHR- 492 (956)
T ss_pred HHHHHHHhHH---H-----------------HHHhh-cCHHHHHHHH--------hhhhhccccCHHHHHHHHHHHhcC-
Confidence 4333322000 0 11111 11100 0000 000112345789999999998753
Q ss_pred cCceEEEEecchhHHHHHHHHH-hhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEE
Q 003450 623 QGHRVLIYSQFQHMLDLLEDYL-TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (819)
Q Consensus 623 ~g~kvlIFs~~~~~ld~L~~~L-~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~ 701 (819)
++|+||||++..+++.|.+.| ...|+++..++|+++..+|+++++.|++++++. .+||+|.+||+|+|++.|++||+
T Consensus 493 -~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~-~VLIsTdvgseGlNlq~a~~VIn 570 (956)
T PRK04914 493 -SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGA-QVLLCSEIGSEGRNFQFASHLVL 570 (956)
T ss_pred -CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCc-cEEEechhhccCCCcccccEEEE
Confidence 789999999999999999999 567999999999999999999999998754333 37899999999999999999999
Q ss_pred eCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhhHHHHhch
Q 003450 702 YDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGR 759 (819)
Q Consensus 702 ~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~~K~~l~~~v~~~ 759 (819)
||+||||..++||+||+||+||+++|.||.++.++|+++.|++...+|+.+.+.++..
T Consensus 571 fDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~ 628 (956)
T PRK04914 571 FDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPT 628 (956)
T ss_pred ecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCC
Confidence 9999999999999999999999999999999999999999999999999877666544
No 18
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=7e-53 Score=450.59 Aligned_cols=458 Identities=32% Similarity=0.500 Sum_probs=361.4
Q ss_pred CCCchhHHHHHHHHHHh---------hcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-CCCceEEEecCcchHHHHHHHH
Q 003450 284 GSLHPYQLEGLNFLRFS---------WSKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTLRNWEREFA 353 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~---------~~~~~~~iLade~GlGKT~~~i~~l~~l~~~-~~~~~LIv~P~~ll~qW~~e~~ 353 (819)
..|+|||+-|+.||+.. -..|.|||||+.||+|||+|+|+|+.-+++. ..+.+|+|+|-.++.||..||.
T Consensus 253 ~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~AKtVL~ivPiNTlQNWlsEfn 332 (1387)
T KOG1016|consen 253 HVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIVPINTLQNWLSEFN 332 (1387)
T ss_pred hhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCccceEEEEEehHHHHHHHHHhh
Confidence 35899999999998432 2457899999999999999999999888765 4569999999999999999999
Q ss_pred HHcCC-----------CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--
Q 003450 354 TWAPQ-----------MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD-- 420 (819)
Q Consensus 354 ~~~p~-----------~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~-- 420 (819)
.|.|. +.|.++....+.-..... .+..+ ...-.|+++-|++++..
T Consensus 333 mWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rak-------------------vi~~W---v~~GGVlLvGYemfRLL~l 390 (1387)
T KOG1016|consen 333 MWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAK-------------------VIEQW---VQTGGVLLVGYEMFRLLIL 390 (1387)
T ss_pred hhcCCCcccCCCccceeEEEEecCchhhHHHHHH-------------------HHHHH---hccCCEEEehHHHHHHHHH
Confidence 99985 223333222111110000 00011 12335888888877532
Q ss_pred ------------------------------------ccccCCccceEEEecccccccCcccHHHHHHHhcccCcEEEEeC
Q 003450 421 ------------------------------------SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTG 464 (819)
Q Consensus 421 ------------------------------------~~~l~~~~~~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTg 464 (819)
.+.|-.-..|+||+||.|++||..+.+..+|+.+++++||.|||
T Consensus 391 k~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTG 470 (1387)
T KOG1016|consen 391 KTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTG 470 (1387)
T ss_pred hcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEec
Confidence 11122234789999999999999999999999999999999999
Q ss_pred CCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccch---------------HHHHHHHHHHHhhHHHHHhhhhhhhcCC
Q 003450 465 TPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQ---------------EEQISRLHRMLAPHLLRRVKKDVMKELP 529 (819)
Q Consensus 465 TP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~---------------~~~~~~l~~~l~~~~lrr~k~dv~~~lp 529 (819)
-|+|||+.|+|.++.|+.|+.+++..+|...|..... .....-|+.++.-|+-||+-..+...||
T Consensus 471 YPLQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP 550 (1387)
T KOG1016|consen 471 YPLQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILP 550 (1387)
T ss_pred cccccchHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcc
Confidence 9999999999999999999999999999999964221 1235568999999999999988888999
Q ss_pred CceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCC--------C-----------
Q 003450 530 PKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV--------E----------- 590 (819)
Q Consensus 530 ~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~--------~----------- 590 (819)
.+.++++.|.+|..|+++|..+................+.+..+.-..++.|||.++-.. +
T Consensus 551 ~k~EyViLvr~s~iQR~LY~~Fm~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~a 630 (1387)
T KOG1016|consen 551 EKKEYVILVRKSQIQRQLYRNFMLDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFA 630 (1387)
T ss_pred cccceEEEEeHHHHHHHHHHHHHHHHHHhhccccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhh
Confidence 999999999999999999999886665555443333334455555556666888643100 0
Q ss_pred ---------------CC--------------------------------ccCcHHH--------HHHhhhcCchHHHHHH
Q 003450 591 ---------------PD--------------------------------IEDTNES--------FKQLLESSGKLQLLDK 615 (819)
Q Consensus 591 ---------------~~--------------------------------~~~~~~~--------~~~l~~~s~Kl~~l~~ 615 (819)
+. ....... ...++..++|+..+.+
T Consensus 631 g~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~ 710 (1387)
T KOG1016|consen 631 GLQQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLE 710 (1387)
T ss_pred cccccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEe
Confidence 00 0000000 0112345667777777
Q ss_pred HHHHHHhcCceEEEEecchhHHHHHHHHHhhC------------------CCeEEEEeccCChHHHHHHHHHhcCCCCCc
Q 003450 616 MMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK------------------KWQYERIDGKVGGAERQIRIDRFNAKNSSR 677 (819)
Q Consensus 616 ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~------------------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~ 677 (819)
++..-..-|.++|||||....||+|+++|..+ +..|.+++|.+++.+|+++|++||...+-.
T Consensus 711 ~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~ls 790 (1387)
T KOG1016|consen 711 ILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLS 790 (1387)
T ss_pred eeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCce
Confidence 77776677899999999999999999999643 346889999999999999999999988777
Q ss_pred EEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhhHHHHh
Q 003450 678 FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVV 757 (819)
Q Consensus 678 ~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~~K~~l~~~v~ 757 (819)
..||+||++|..||||-+|+.+|+||..|||..+.||..|++|.||+|++.|||||+.+|+|.+||.++-.|+.+.+.|+
T Consensus 791 Wlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvV 870 (1387)
T KOG1016|consen 791 WLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVV 870 (1387)
T ss_pred eeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhc
Q 003450 758 GRLKAQ 763 (819)
Q Consensus 758 ~~~~~~ 763 (819)
+.....
T Consensus 871 Dd~np~ 876 (1387)
T KOG1016|consen 871 DDANPD 876 (1387)
T ss_pred cccCcc
Confidence 877654
No 19
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.2e-47 Score=433.63 Aligned_cols=437 Identities=30% Similarity=0.496 Sum_probs=355.8
Q ss_pred hhHHHHHHHHHHh-hcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC--------CCceEEEecCcchHHHHHHHHHHcC-
Q 003450 288 PYQLEGLNFLRFS-WSKQTHVILADEMGLGKTIQSIAFLASLFGER--------ISPHLVVAPLSTLRNWEREFATWAP- 357 (819)
Q Consensus 288 ~~Q~~~v~~l~~~-~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~--------~~~~LIv~P~~ll~qW~~e~~~~~p- 357 (819)
.+|..+-.|+... ...-.|||++|+||+|||+++++++....... .+..|||||.+++.||..|+.+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 5566655555332 23457999999999999999999988764332 2478999999999999999966553
Q ss_pred -CCeEEEEec-ChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEec
Q 003450 358 -QMNVVMYVG-TSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (819)
Q Consensus 358 -~~~v~~~~g-~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvD 435 (819)
.+.+.+|+| .+... ...+++||+|||+++.. ..+..+.|-.+|+|
T Consensus 215 ~~l~v~v~~gr~kd~~-------------------------------el~~~dVVltTy~il~~--~~l~~i~w~Riild 261 (674)
T KOG1001|consen 215 DKLSIYVYHGRTKDKS-------------------------------ELNSYDVVLTTYDILKN--SPLVKIKWLRIVLD 261 (674)
T ss_pred cceEEEEecccccccc-------------------------------hhcCCceEEeeHHHhhc--ccccceeEEEEEec
Confidence 688888998 22111 23577899999999975 56667899999999
Q ss_pred ccccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccc---h-HHHHHHHHHH
Q 003450 436 EGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN---Q-EEQISRLHRM 511 (819)
Q Consensus 436 EaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~---~-~~~~~~l~~~ 511 (819)
|||.++|..++.++++..+.+.+||.|||||+||++.|+|+++.|+.-+++.....|...+.... . ......++..
T Consensus 262 ea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~ 341 (674)
T KOG1001|consen 262 EAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGI 341 (674)
T ss_pred cccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988887775432 2 3567788999
Q ss_pred HhhHHHHHhhhhh-----hhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhc------CCCcchHHHHHHHHHHhc
Q 003450 512 LAPHLLRRVKKDV-----MKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRR------GGAQISLINVVMELRKLC 580 (819)
Q Consensus 512 l~~~~lrr~k~dv-----~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~------~~~~~~~~~~~~~lr~~~ 580 (819)
+..+++||+|..- ...+||+...++.+.++..++.+|+.+........... ..+...++..+.++|++|
T Consensus 342 L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c 421 (674)
T KOG1001|consen 342 LKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQAC 421 (674)
T ss_pred HHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHc
Confidence 9999999999632 33699999999999999999999999988765554331 234456777788999999
Q ss_pred CCCcccCCCCCCccC----cH--------------------------------------------------------HHH
Q 003450 581 CHPYMLEGVEPDIED----TN--------------------------------------------------------ESF 600 (819)
Q Consensus 581 ~hp~l~~~~~~~~~~----~~--------------------------------------------------------~~~ 600 (819)
+||.+.......... .. -..
T Consensus 422 ~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 422 DHSLLVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cchHhhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 999876321100000 00 000
Q ss_pred HHhhh-------------cCchHHHHHHHHHHHHhcCc-eEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHH
Q 003450 601 KQLLE-------------SSGKLQLLDKMMVKLKEQGH-RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (819)
Q Consensus 601 ~~l~~-------------~s~Kl~~l~~ll~~l~~~g~-kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~ 666 (819)
..++. .|.|+..+.++|........ +++||||++.+++++.-.|...|+.+.+++|.++...|.+.
T Consensus 502 ~~l~s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s 581 (674)
T KOG1001|consen 502 KKLLSANPLPSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKS 581 (674)
T ss_pred HHHhhcccccchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhh
Confidence 01111 26777888888875443344 99999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHH
Q 003450 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (819)
Q Consensus 667 i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~ 746 (819)
+..|+.+. ...++++|.+|||.|+||+.|++|+++||+|||....||+.|+||+||+++|.|++|+..+|+||+|+.++
T Consensus 582 ~~~~~~~~-~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq 660 (674)
T KOG1001|consen 582 FTDFPCDP-LVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQ 660 (674)
T ss_pred hcccccCc-cHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHH
Confidence 99999544 44568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHhc
Q 003450 747 KKKMVLEHLVVG 758 (819)
Q Consensus 747 ~~K~~l~~~v~~ 758 (819)
++|..+...+++
T Consensus 661 ~~K~~~~~~a~~ 672 (674)
T KOG1001|consen 661 EKKREYNASAFG 672 (674)
T ss_pred HHHHHHHhhhcc
Confidence 999998877764
No 20
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.2e-40 Score=371.60 Aligned_cols=338 Identities=15% Similarity=0.256 Sum_probs=251.5
Q ss_pred CCCCchhHHHHHHHHHHhhcCC--CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCc-chHHHHHHHHHHc--C
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWA--P 357 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~--~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~-ll~qW~~e~~~~~--p 357 (819)
..+|||||.+++.++. .++ +++||.++||+|||+++++++..+ .+++|||||.. ++.||.++|.+|+ +
T Consensus 253 ~~~LRpYQ~eAl~~~~---~~gr~r~GIIvLPtGaGKTlvai~aa~~l----~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVTAACTV----KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHH---hcCCCCCcEEEeCCCCChHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 4689999999998773 333 589999999999999999988765 25899999975 5899999999997 3
Q ss_pred CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc----------ccccCCc
Q 003450 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----------SASLKPI 427 (819)
Q Consensus 358 ~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~----------~~~l~~~ 427 (819)
...+..++|....+. .....|+|+||+++... .+.+...
T Consensus 326 ~~~I~~~tg~~k~~~-------------------------------~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~ 374 (732)
T TIGR00603 326 DSQICRFTSDAKERF-------------------------------HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNR 374 (732)
T ss_pred CceEEEEecCccccc-------------------------------ccCCcEEEEEHHHhhcccccchhhhHHHHHhccc
Confidence 456666766533210 12357999999998643 2345556
Q ss_pred cceEEEecccccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhc-ccCCCCCCChHHHHHHHhccchHHHHH
Q 003450 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH-FLDAGKFGSLEEFQEEFKDINQEEQIS 506 (819)
Q Consensus 428 ~~~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~-~l~~~~~~~~~~f~~~~~~~~~~~~~~ 506 (819)
.|++||+||||++.+ ....+.+..+.+.+||+|||||++++- .+..+. ++.|..|.
T Consensus 375 ~~gLII~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD~--~~~~L~~LiGP~vye------------------- 431 (732)
T TIGR00603 375 EWGLILLDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVREDD--KITDLNFLIGPKLYE------------------- 431 (732)
T ss_pred cCCEEEEEccccccH--HHHHHHHHhcCcCcEEEEeecCcccCC--chhhhhhhcCCeeee-------------------
Confidence 899999999999953 334446667889999999999998762 222222 23443322
Q ss_pred HHHHHHhhHHHHHhhhhhh--hcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCc
Q 003450 507 RLHRMLAPHLLRRVKKDVM--KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY 584 (819)
Q Consensus 507 ~l~~~l~~~~lrr~k~dv~--~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~ 584 (819)
....+.. ..|.+.....+.|+|++.....|.....+ .+..
T Consensus 432 ------------~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~---------------------~k~~----- 473 (732)
T TIGR00603 432 ------------ANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSR---------------------KRML----- 473 (732)
T ss_pred ------------cCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcch---------------------hhhH-----
Confidence 1111111 24677778889999998754444211100 0000
Q ss_pred ccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHH
Q 003450 585 MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ 664 (819)
Q Consensus 585 l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~ 664 (819)
.......|+..+..++......|+++||||++...++.+...| |. ..++|+++..+|.
T Consensus 474 -----------------l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~ 531 (732)
T TIGR00603 474 -----------------LYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERM 531 (732)
T ss_pred -----------------HhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHH
Confidence 0012456899999999877678999999999999888888877 33 4589999999999
Q ss_pred HHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCC-CcchHHHHhHhhhhcCCCCc-----EEEEEEEeCCCH
Q 003450 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNK-----VMIFRLITRGSI 738 (819)
Q Consensus 665 ~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~w-np~~~~Qa~gR~~R~Gq~~~-----V~v~~li~~~Tv 738 (819)
+++++|+.++ .+.+|++|+++++|||++.|++||++++++ |+..++||+||+.|.+..+. ..+|.|++++|.
T Consensus 532 ~il~~Fr~~~--~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 532 QILQNFQHNP--KVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred HHHHHHHhCC--CccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 9999998542 334688889999999999999999999986 99999999999999987653 789999999999
Q ss_pred HHHHH
Q 003450 739 EERMM 743 (819)
Q Consensus 739 Ee~i~ 743 (819)
|+...
T Consensus 610 E~~~s 614 (732)
T TIGR00603 610 EMYYS 614 (732)
T ss_pred HHHHH
Confidence 98764
No 21
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=2e-40 Score=355.40 Aligned_cols=272 Identities=42% Similarity=0.704 Sum_probs=225.7
Q ss_pred hHHHHHHHHHHhh---------cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCC----CceEEEecCcchHHHHHHHHHH
Q 003450 289 YQLEGLNFLRFSW---------SKQTHVILADEMGLGKTIQSIAFLASLFGERI----SPHLVVAPLSTLRNWEREFATW 355 (819)
Q Consensus 289 ~Q~~~v~~l~~~~---------~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~----~~~LIv~P~~ll~qW~~e~~~~ 355 (819)
||++|+.||+..+ ...+|+||+|+||+|||+++++++..+..... +++|||||.+++.+|..|+.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999888 78889999999999999999999998765433 2699999999999999999999
Q ss_pred c-C-CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHh-----hcccccCCcc
Q 003450 356 A-P-QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMIN-----LDSASLKPIK 428 (819)
Q Consensus 356 ~-p-~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~-----~~~~~l~~~~ 428 (819)
+ | .++++++.|....+.. .......++++|+||+.+. .....+...+
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~--------------------------~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~ 134 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRL--------------------------SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIK 134 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHT--------------------------TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSE
T ss_pred cccccccccccccccccccc--------------------------cccccccceeeecccccccccccccccccccccc
Confidence 9 4 6889988888722211 1112357899999999999 6677788889
Q ss_pred ceEEEecccccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhc---cchHHHH
Q 003450 429 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD---INQEEQI 505 (819)
Q Consensus 429 ~~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~---~~~~~~~ 505 (819)
|++||+||+|++||..+..++++..+.+.++|+|||||++|++.|+|++++||.|+.+.+...|.+.|.. .......
T Consensus 135 ~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~ 214 (299)
T PF00176_consen 135 WDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKENSYENI 214 (299)
T ss_dssp EEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTHHHHHH
T ss_pred ceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999988743 4456778
Q ss_pred HHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcC----CCcchHHHHHHHHHHhcC
Q 003450 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG----GAQISLINVVMELRKLCC 581 (819)
Q Consensus 506 ~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~----~~~~~~~~~~~~lr~~~~ 581 (819)
..|...++++++||++.++...+|+..+.++.++||+.|++.|+.+.......+.... +....++..+.+||++|+
T Consensus 215 ~~L~~~l~~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~ 294 (299)
T PF00176_consen 215 ERLRELLSEFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCN 294 (299)
T ss_dssp HHHHHHHCCCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhC
Confidence 8999999999999999999889999999999999999999999998887766544333 233468889999999999
Q ss_pred CCccc
Q 003450 582 HPYML 586 (819)
Q Consensus 582 hp~l~ 586 (819)
||+|+
T Consensus 295 hp~l~ 299 (299)
T PF00176_consen 295 HPYLV 299 (299)
T ss_dssp -THHC
T ss_pred CcccC
Confidence 99874
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.3e-35 Score=356.71 Aligned_cols=431 Identities=17% Similarity=0.198 Sum_probs=284.5
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcC--CCe
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--QMN 360 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p--~~~ 360 (819)
.++|+||.+.+..+. .+++|++++||+|||++++.++..++....+++|||+|+ .++.||.+++.+++. ...
T Consensus 14 ~~~r~yQ~~~~~~~l-----~~n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 88 (773)
T PRK13766 14 IEARLYQQLLAATAL-----KKNTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEK 88 (773)
T ss_pred CCccHHHHHHHHHHh-----cCCeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCce
Confidence 579999999887552 238999999999999999888887765555699999997 788999999998863 247
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccceEEEecccc
Q 003450 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEGH 438 (819)
Q Consensus 361 v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~lIvDEaH 438 (819)
+..++|..........+ ...+|+++|++.+..+. ..+....|++|||||||
T Consensus 89 v~~~~g~~~~~~r~~~~---------------------------~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 89 IVVFTGEVSPEKRAELW---------------------------EKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH 141 (773)
T ss_pred EEEEeCCCCHHHHHHHH---------------------------hCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc
Confidence 88888865543221111 24679999999987642 33444579999999999
Q ss_pred cccCcccHHHHHHHh---cccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCCh----HHHHHHHh-------ccchHHH
Q 003450 439 RLKNKDSKLFSSLKQ---YSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSL----EEFQEEFK-------DINQEEQ 504 (819)
Q Consensus 439 ~~kn~~s~~~~~l~~---l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~----~~f~~~~~-------~~~~~~~ 504 (819)
++.+..+..+.+-.. .+..++++|||||..+ ...+..+++.|........ ......+. ...-...
T Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~ 220 (773)
T PRK13766 142 RAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEE 220 (773)
T ss_pred cccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHH
Confidence 998765544332222 2345699999999765 4556665555543322111 11111111 1223456
Q ss_pred HHHHHHHHhhHHHHHhhhhhhhc-CCCceEEEEEecCCHHHHHHHHHHHHHHHH---HH---------H-----hcCCCc
Q 003450 505 ISRLHRMLAPHLLRRVKKDVMKE-LPPKKELILRVELSSKQKEYYKAILTRNYQ---IL---------T-----RRGGAQ 566 (819)
Q Consensus 505 ~~~l~~~l~~~~lrr~k~dv~~~-lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~---~l---------~-----~~~~~~ 566 (819)
+..++..|..++.++.+...... .++....+....+...++.++..+...... .+ . ......
T Consensus 221 ~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 300 (773)
T PRK13766 221 LKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGV 300 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 67788888888887776543322 222221111122222333222222110000 00 0 000111
Q ss_pred chHHHHHHHHHHhcCCCcccCCCCCCccCc------HHHHHHhhhcCchHHHHHHHHHHHH--hcCceEEEEecchhHHH
Q 003450 567 ISLINVVMELRKLCCHPYMLEGVEPDIEDT------NESFKQLLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLD 638 (819)
Q Consensus 567 ~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~------~~~~~~l~~~s~Kl~~l~~ll~~l~--~~g~kvlIFs~~~~~ld 638 (819)
..+...+..++....++...... ...... ..........++|+..|.++|.... ..+.++||||++..+++
T Consensus 301 ~~~~~y~~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~ 379 (773)
T PRK13766 301 EALRRYLERLREEARSSGGSKAS-KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAE 379 (773)
T ss_pred HHHHHHHHHHHhhccccCCcHHH-HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHH
Confidence 12223333333222111100000 000000 0011222345789999999999877 46889999999999999
Q ss_pred HHHHHHhhCCCeEEEEecc--------CChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcch
Q 003450 639 LLEDYLTFKKWQYERIDGK--------VGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHA 710 (819)
Q Consensus 639 ~L~~~L~~~g~~~~~l~G~--------~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~ 710 (819)
.|.++|...|+++..++|. ++..+|++++++|+++.. .+|++|.++++|+|++.+++||+||++||+..
T Consensus 380 ~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~---~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r 456 (773)
T PRK13766 380 KIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEF---NVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIR 456 (773)
T ss_pred HHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCC---CEEEECChhhcCCCcccCCEEEEeCCCCCHHH
Confidence 9999999999999999997 888999999999987643 37999999999999999999999999999999
Q ss_pred HHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhhHH
Q 003450 711 DLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEH 754 (819)
Q Consensus 711 ~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~~K~~l~~ 754 (819)
++||.||++|.|+ +.||.|++.+|.||.++....+|...+.
T Consensus 457 ~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~~ 497 (773)
T PRK13766 457 SIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKMK 497 (773)
T ss_pred HHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHHH
Confidence 9999999988775 6789999999999999877766555553
No 23
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.8e-34 Score=300.60 Aligned_cols=428 Identities=16% Similarity=0.181 Sum_probs=280.8
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHc--CCCe
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQMN 360 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~--p~~~ 360 (819)
.+.|.||..-+.-. ..+|++++.+||+|||++|+.++...+....+.+|+++|+ .|+.|..+.+.+++ |...
T Consensus 14 ie~R~YQ~~i~a~a-----l~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 14 IEPRLYQLNIAAKA-----LFKNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred ccHHHHHHHHHHHH-----hhcCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 46899999976543 2459999999999999999999987776665699999995 89999999999887 5578
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--ccccCCccceEEEecccc
Q 003450 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGH 438 (819)
Q Consensus 361 v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~lIvDEaH 438 (819)
++.++|..........| .+.+|+++|++++.+| ...+..-++.++|+||||
T Consensus 89 i~~ltGev~p~~R~~~w---------------------------~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH 141 (542)
T COG1111 89 IAALTGEVRPEEREELW---------------------------AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH 141 (542)
T ss_pred eeeecCCCChHHHHHHH---------------------------hhCCEEEeccHHHHhHHhcCccChHHceEEEechhh
Confidence 88999976554332222 3567999999999876 344566688999999999
Q ss_pred cccCcccHHHHHH--Hhcc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCC----ChHHHHHHH-------hccchHHH
Q 003450 439 RLKNKDSKLFSSL--KQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFG----SLEEFQEEF-------KDINQEEQ 504 (819)
Q Consensus 439 ~~kn~~s~~~~~l--~~l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~----~~~~f~~~~-------~~~~~~~~ 504 (819)
|.-+..+-.+-+= .... ..++++|||||= ++...+...+.-|..+... ...+-.... -.+.-+..
T Consensus 142 RAvGnyAYv~Va~~y~~~~k~~~ilgLTASPG-s~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e 220 (542)
T COG1111 142 RAVGNYAYVFVAKEYLRSAKNPLILGLTASPG-SDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEE 220 (542)
T ss_pred hccCcchHHHHHHHHHHhccCceEEEEecCCC-CCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHH
Confidence 9987766554333 2333 346899999993 3444454444444433321 111111111 11223455
Q ss_pred HHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhc----------------------
Q 003450 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRR---------------------- 562 (819)
Q Consensus 505 ~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~---------------------- 562 (819)
+..+.+.|+..+-.|++..-...+ .....+ -.++++.... ... ......
T Consensus 221 ~~~ir~~l~~~l~~~Lk~L~~~g~-----~~~~~~--~~~kdl~~~~-~~~-~~~a~~~~~~~~~~l~~~a~~~kl~~a~ 291 (542)
T COG1111 221 IKEIRDLLRDALKPRLKPLKELGV-----IESSSP--VSKKDLLELR-QIR-LIMAKNEDSDKFRLLSVLAEAIKLAHAL 291 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCc-----eeccCc--ccHhHHHHHH-HHH-HHhccCccHHHHHHHHHHHHHHHHHHHH
Confidence 566666666655555553222111 000010 0112221111 000 000000
Q ss_pred ----CCCcchHHHHHHHHHHhcCCCccc---CCCCCCccCcHHHH------HHhhhcCchHHHHHHHHHHHH--hcCceE
Q 003450 563 ----GGAQISLINVVMELRKLCCHPYML---EGVEPDIEDTNESF------KQLLESSGKLQLLDKMMVKLK--EQGHRV 627 (819)
Q Consensus 563 ----~~~~~~~~~~~~~lr~~~~hp~l~---~~~~~~~~~~~~~~------~~l~~~s~Kl~~l~~ll~~l~--~~g~kv 627 (819)
..+-..+.+.+.++..-+.. ... ...-.+.. -.... ...--..+|+..+.+++.+.. ..+.|+
T Consensus 292 elletqGi~~~~~Yl~~l~e~~~~-~~sk~a~~l~~d~~-~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~Rv 369 (542)
T COG1111 292 ELLETQGIRPFYQYLEKLEEEATK-GGSKAAKSLLADPY-FKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRV 369 (542)
T ss_pred HHHHhhChHHHHHHHHHHHHHhcc-cchHHHHHHhcChh-hHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceE
Confidence 00111112222222111111 000 00000000 00010 111224789999999999877 457899
Q ss_pred EEEecchhHHHHHHHHHhhCCCeEE-EEec--------cCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCE
Q 003450 628 LIYSQFQHMLDLLEDYLTFKKWQYE-RIDG--------KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADT 698 (819)
Q Consensus 628 lIFs~~~~~ld~L~~~L~~~g~~~~-~l~G--------~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~ 698 (819)
|||++|+++++.|.++|...|.... ++-| +|++.+..++|++|+++.-+ +|++|..|.+|||++++|.
T Consensus 370 IVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n---VLVaTSVgEEGLDIp~vDl 446 (542)
T COG1111 370 IVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN---VLVATSVGEEGLDIPEVDL 446 (542)
T ss_pred EEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce---EEEEcccccccCCCCcccE
Confidence 9999999999999999999988875 6665 48899999999999886654 8999999999999999999
Q ss_pred EEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhhHHHHhchhh
Q 003450 699 VIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK 761 (819)
Q Consensus 699 VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~~K~~l~~~v~~~~~ 761 (819)
||+|||--++...+||.||++|. +.-.||-|+++||-||.-+..+.+|..-....+.++.
T Consensus 447 VifYEpvpSeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~s~rke~~m~e~i~~~~ 506 (542)
T COG1111 447 VIFYEPVPSEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYSSRRKEQKMIESIRGLS 506 (542)
T ss_pred EEEecCCcHHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999994 6678899999999999999999888877666665444
No 24
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=7.3e-32 Score=299.41 Aligned_cols=361 Identities=20% Similarity=0.284 Sum_probs=267.6
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCC-e
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM-N 360 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~-~ 360 (819)
..+|||||.++++.+...+..++.+++..+||+|||+.++.++..+.. ++|||||. .++.||.+.+.+++... .
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~----~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~ 109 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR----STLVLVPTKELLDQWAEALKKFLLLNDE 109 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC----CEEEEECcHHHHHHHHHHHHHhcCCccc
Confidence 367999999999888766666889999999999999999999988743 39999996 88899998888877432 3
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCccccccccCCcccccccccccc-ccEEEchhhHHhhc--ccccCCccceEEEeccc
Q 003450 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIK-FDVLLTSYEMINLD--SASLKPIKWQCMIVDEG 437 (819)
Q Consensus 361 v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vvi~ty~~l~~~--~~~l~~~~~~~lIvDEa 437 (819)
+..+.|.... .. ..|.|+||+++... ...+..-+|++||+|||
T Consensus 110 ~g~~~~~~~~----------------------------------~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~ 155 (442)
T COG1061 110 IGIYGGGEKE----------------------------------LEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEV 155 (442)
T ss_pred cceecCceec----------------------------------cCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEcc
Confidence 3444433221 12 46999999999875 34444448999999999
Q ss_pred ccccCcccHHHHHHHhcccCc-EEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHH
Q 003450 438 HRLKNKDSKLFSSLKQYSTRH-RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (819)
Q Consensus 438 H~~kn~~s~~~~~l~~l~~~~-~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~ 516 (819)
||+.....+. .+..+...+ +|+|||||...+...+..+..++.|-.+
T Consensus 156 Hh~~a~~~~~--~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy------------------------------ 203 (442)
T COG1061 156 HHLPAPSYRR--ILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVY------------------------------ 203 (442)
T ss_pred ccCCcHHHHH--HHHhhhcccceeeeccCceeecCCchhHHHHhcCCeEe------------------------------
Confidence 9995433332 333344555 9999999975553333333333332221
Q ss_pred HHHhhhh-hh-hcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCcc
Q 003450 517 LRRVKKD-VM-KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (819)
Q Consensus 517 lrr~k~d-v~-~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~ 594 (819)
.....+ +. ..|.|.....+.+.++......|..........+..... ..
T Consensus 204 -~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~-----~~----------------------- 254 (442)
T COG1061 204 -EVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT-----LR----------------------- 254 (442)
T ss_pred -ecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh-----hh-----------------------
Confidence 111111 12 358889999999999999999888777665544332211 00
Q ss_pred CcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCC
Q 003450 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (819)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~ 674 (819)
..............|+..+..++.... ++.+++||+......+.+...|...|+ +..++|.++..+|.++++.|..++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~ 332 (442)
T COG1061 255 AENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG 332 (442)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC
Confidence 001112222345667888888888766 789999999999999999999998888 999999999999999999998765
Q ss_pred CCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCC-CCc--EEEEEEEeCCCHHHHHHHHHH
Q 003450 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQ-TNK--VMIFRLITRGSIEERMMQMTK 747 (819)
Q Consensus 675 ~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq-~~~--V~v~~li~~~TvEe~i~~~~~ 747 (819)
+.+|++++.+++|+|+|+++++|+..++-++..+.|++||+.|... ++. +..|-+++..+.+..+.....
T Consensus 333 ---~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (442)
T COG1061 333 ---IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRR 405 (442)
T ss_pred ---CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhh
Confidence 4489999999999999999999999999999999999999999544 333 677788888888877665544
No 25
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.1e-31 Score=299.64 Aligned_cols=340 Identities=14% Similarity=0.150 Sum_probs=230.1
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHc--CCC
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQM 359 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~--p~~ 359 (819)
...|||||.+++..+ ..+.++|+..+||+|||+++++++..+...+..++||+||+ .|+.||.++|.+|. |..
T Consensus 112 ~~~~r~~Q~~av~~~----l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~ 187 (501)
T PHA02558 112 KIEPHWYQYDAVYEG----LKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE 187 (501)
T ss_pred cCCCCHHHHHHHHHH----HhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhcccccc
Confidence 368999999998755 34677899999999999988776655555554599999996 88899999999876 223
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEeccccc
Q 003450 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHR 439 (819)
Q Consensus 360 ~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~ 439 (819)
.+..+.|+... ....+|+|+|++++......+ --++++||+||||+
T Consensus 188 ~~~~i~~g~~~---------------------------------~~~~~I~VaT~qsl~~~~~~~-~~~~~~iIvDEaH~ 233 (501)
T PHA02558 188 AMHKIYSGTAK---------------------------------DTDAPIVVSTWQSAVKQPKEW-FDQFGMVIVDECHL 233 (501)
T ss_pred ceeEEecCccc---------------------------------CCCCCEEEeeHHHHhhchhhh-ccccCEEEEEchhc
Confidence 33222222110 124689999999987543221 12678999999999
Q ss_pred ccCcccHHHHHHHhc-ccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHHHH
Q 003450 440 LKNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLR 518 (819)
Q Consensus 440 ~kn~~s~~~~~l~~l-~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~lr 518 (819)
+... .....+..+ ++.++++|||||....... ..+..+..|-... . ... +++
T Consensus 234 ~~~~--~~~~il~~~~~~~~~lGLTATp~~~~~~~-~~~~~~fG~i~~~-----------v----~~~---~li------ 286 (501)
T PHA02558 234 FTGK--SLTSIITKLDNCKFKFGLTGSLRDGKANI-LQYVGLFGDIFKP-----------V----TTS---QLM------ 286 (501)
T ss_pred ccch--hHHHHHHhhhccceEEEEeccCCCccccH-HHHHHhhCCceEE-----------e----cHH---HHH------
Confidence 9653 234455556 5778999999995432111 1111111111000 0 000 000
Q ss_pred HhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccCcHH
Q 003450 519 RVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNE 598 (819)
Q Consensus 519 r~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~~~ 598 (819)
+ ...+.+.....+.+..++.....+. . . . ...
T Consensus 287 --~---~g~l~~~~~~~v~~~~~~~~~~~~~---~----------~---~---------------------------~~~ 318 (501)
T PHA02558 287 --E---EGQVTDLKINSIFLRYPDEDRVKLK---G----------E---D---------------------------YQE 318 (501)
T ss_pred --h---CCCcCCceEEEEeccCCHHHhhhhc---c----------c---c---------------------------hHH
Confidence 0 0122233333444444432111000 0 0 0 001
Q ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcE
Q 003450 599 SFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRF 678 (819)
Q Consensus 599 ~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~ 678 (819)
....+.....+...+.+++..+.+.|+++|||+..+.+++.|.+.|...|+++..++|+++.++|..+++.|+++. ..
T Consensus 319 ~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~--~~ 396 (501)
T PHA02558 319 EIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGK--GI 396 (501)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCC--Ce
Confidence 1112223445666777777777778899999999999999999999999999999999999999999999997533 23
Q ss_pred EEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCC-cEEEEEEEeCCC
Q 003450 679 CFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN-KVMIFRLITRGS 737 (819)
Q Consensus 679 v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~-~V~v~~li~~~T 737 (819)
+++.+++..++|+|++.+++||+++|+.+...++|++||++|.+..| .+.||.++..-.
T Consensus 397 vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 397 IIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred EEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 34445599999999999999999999999999999999999999876 589999997544
No 26
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.97 E-value=1.7e-30 Score=295.85 Aligned_cols=257 Identities=25% Similarity=0.465 Sum_probs=195.3
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhc------------C-----CCCceEEEecCcchHHHHHHHHHHcCCC-eEEE
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFG------------E-----RISPHLVVAPLSTLRNWEREFATWAPQM-NVVM 363 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~------------~-----~~~~~LIv~P~~ll~qW~~e~~~~~p~~-~v~~ 363 (819)
..|..++++++||+|||...++....-.. . ..|.+|||||++++.||-.||.++++.. .|..
T Consensus 372 ~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 372 KHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred cCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEE
Confidence 45667899999999999887766543221 1 1257899999999999999999999765 9999
Q ss_pred EecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc----------------------c
Q 003450 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----------------------S 421 (819)
Q Consensus 364 ~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~----------------------~ 421 (819)
|.|-.+.... .......+|||+|||+.++.+ .
T Consensus 452 Y~Girk~~~~--------------------------~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~ 505 (1394)
T KOG0298|consen 452 YFGIRKTFWL--------------------------SPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPN 505 (1394)
T ss_pred Eechhhhccc--------------------------CchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCC
Confidence 9997654311 012236899999999999754 1
Q ss_pred cccCCccceEEEecccccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccch
Q 003450 422 ASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQ 501 (819)
Q Consensus 422 ~~l~~~~~~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~ 501 (819)
+.|-.+.|-.|++||||.+...+|...+.+..+++.++|+.||||+++ +.+||.||.||...+|.....|.+.......
T Consensus 506 SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~ 584 (1394)
T KOG0298|consen 506 SPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQ 584 (1394)
T ss_pred CchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHH
Confidence 224446799999999999999899999999999999999999999999 9999999999999999999888776543221
Q ss_pred -HHHHHHHHHHHhhHHHHHhhhhhhh--cCCCceEEEEEecCCHHHHHHHHHHHHHH----HHH---HHhc---C-C---
Q 003450 502 -EEQISRLHRMLAPHLLRRVKKDVMK--ELPPKKELILRVELSSKQKEYYKAILTRN----YQI---LTRR---G-G--- 564 (819)
Q Consensus 502 -~~~~~~l~~~l~~~~lrr~k~dv~~--~lp~~~~~~v~~~ls~~q~~~y~~i~~~~----~~~---l~~~---~-~--- 564 (819)
......+.+++...+-|+.+.++.. .+||..+.+....+++.+..+|+...... ... +.+. . .
T Consensus 585 ~ra~~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~ 664 (1394)
T KOG0298|consen 585 LRAKCEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLA 664 (1394)
T ss_pred HHhhhhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccc
Confidence 1334567888888899999988876 47888888888888888877776543322 111 1110 0 1
Q ss_pred -----CcchHHHHHHHHHHhcCCCcc
Q 003450 565 -----AQISLINVVMELRKLCCHPYM 585 (819)
Q Consensus 565 -----~~~~~~~~~~~lr~~~~hp~l 585 (819)
....+.+.+.+||++|.||-.
T Consensus 665 ~l~~~~~a~i~~~l~rLRq~Cchplv 690 (1394)
T KOG0298|consen 665 SLSPQLLAIILKWLLRLRQACCHPLV 690 (1394)
T ss_pred cCChhhHHHHHHHHHHHHHhhccccc
Confidence 112467888999999999853
No 27
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.96 E-value=2.9e-26 Score=254.93 Aligned_cols=431 Identities=18% Similarity=0.213 Sum_probs=251.2
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCC-CceEEEecC-cchHHHHHHHHHHcCCCeE
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI-SPHLVVAPL-STLRNWEREFATWAPQMNV 361 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~-~~~LIv~P~-~ll~qW~~e~~~~~p~~~v 361 (819)
..||+||.+-+.-. . ++|+|++.+||+|||.+|+.++...++... +++++++|+ .++.|..+.+..++-...+
T Consensus 61 ~~lR~YQ~eivq~A----L-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~ 135 (746)
T KOG0354|consen 61 LELRNYQEELVQPA----L-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSV 135 (746)
T ss_pred ccccHHHHHHhHHh----h-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCcccc
Confidence 57999999987643 3 899999999999999999888877766544 599999996 7778888888887744566
Q ss_pred EEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCC---ccceEEEecccc
Q 003450 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKP---IKWQCMIVDEGH 438 (819)
Q Consensus 362 ~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~---~~~~~lIvDEaH 438 (819)
....|+...+..... -....+|++.|++.+..+...... -.|.++||||||
T Consensus 136 T~~l~~~~~~~~r~~--------------------------i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H 189 (746)
T KOG0354|consen 136 TGQLGDTVPRSNRGE--------------------------IVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH 189 (746)
T ss_pred eeeccCccCCCchhh--------------------------hhcccceEEeChHhhhhhcccccccccceEEEEEEcccc
Confidence 666665433321111 123568999999999876544333 358999999999
Q ss_pred cccCcc--cHHHHHHHhcc--cCcEEEEeCCCCCCChhHHHhhhcccCCCC-CCChHHHHHHHhcc------------ch
Q 003450 439 RLKNKD--SKLFSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGK-FGSLEEFQEEFKDI------------NQ 501 (819)
Q Consensus 439 ~~kn~~--s~~~~~l~~l~--~~~~llLTgTP~~n~~~el~~ll~~l~~~~-~~~~~~f~~~~~~~------------~~ 501 (819)
|..... +.....+...+ ...+|+|||||= ++..+..+.+.-|.... ......-...|... ..
T Consensus 190 ra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~ 268 (746)
T KOG0354|consen 190 RTSKNHPYNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCE 268 (746)
T ss_pred cccccccHHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhh
Confidence 986543 33444444443 347899999997 55555554443333221 00111112222111 11
Q ss_pred HHHHHHHHHHHhhHHHHHhhhhhhhc-CCC-ceEE-EEEec------CCHHHHH-HHHHHHHHH-HHHHHhcCCCcchHH
Q 003450 502 EEQISRLHRMLAPHLLRRVKKDVMKE-LPP-KKEL-ILRVE------LSSKQKE-YYKAILTRN-YQILTRRGGAQISLI 570 (819)
Q Consensus 502 ~~~~~~l~~~l~~~~lrr~k~dv~~~-lp~-~~~~-~v~~~------ls~~q~~-~y~~i~~~~-~~~l~~~~~~~~~~~ 570 (819)
......|..++.|++.+-....+... .+. ..+. ++..+ ....|+- +|...+... ...+...+-. +.
T Consensus 269 ~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir---~~ 345 (746)
T KOG0354|consen 269 RDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIR---FV 345 (746)
T ss_pred hhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchh---hH
Confidence 22344566677776654432222110 000 0000 00000 0011110 111111110 0011100000 11
Q ss_pred HHHHHHHHhcCCCc----ccCCCCCCccCc----HHHHHHh----hhcCchHHHHHHHHHHHHhc--CceEEEEecchhH
Q 003450 571 NVVMELRKLCCHPY----MLEGVEPDIEDT----NESFKQL----LESSGKLQLLDKMMVKLKEQ--GHRVLIYSQFQHM 636 (819)
Q Consensus 571 ~~~~~lr~~~~hp~----l~~~~~~~~~~~----~~~~~~l----~~~s~Kl~~l~~ll~~l~~~--g~kvlIFs~~~~~ 636 (819)
..+..+......-. +....+...... ......+ -..++|++.|.++|...... ..|+|||+.++..
T Consensus 346 ~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~s 425 (746)
T KOG0354|consen 346 DALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRES 425 (746)
T ss_pred HHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHH
Confidence 11111110000000 000000000000 0000000 12478999999999887654 4699999999999
Q ss_pred HHHHHHHHhh---CCCeEEEEec--------cCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCC
Q 003450 637 LDLLEDYLTF---KKWQYERIDG--------KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD 705 (819)
Q Consensus 637 ld~L~~~L~~---~g~~~~~l~G--------~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~ 705 (819)
++.|..+|.. .|++...+-| ++++.+.++++++|+++..+ +||+|..|.||||++.||.||.||..
T Consensus 426 a~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N---vLVATSV~EEGLDI~ec~lVIcYd~~ 502 (746)
T KOG0354|consen 426 ALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN---VLVATSVAEEGLDIGECNLVICYDYS 502 (746)
T ss_pred HHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc---EEEEecchhccCCcccccEEEEecCC
Confidence 9999999972 3556555555 47888999999999886554 89999999999999999999999999
Q ss_pred CCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHH-HHhhhhHHHHhc
Q 003450 706 WNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT-KKKMVLEHLVVG 758 (819)
Q Consensus 706 wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~-~~K~~l~~~v~~ 758 (819)
-||..++||+|| +|.-+. +++.|.+ ..++.-+++. ..|..+....+.
T Consensus 503 snpIrmIQrrGR-gRa~ns---~~vll~t--~~~~~~~E~~~~~~e~lm~~~i~ 550 (746)
T KOG0354|consen 503 SNPIRMVQRRGR-GRARNS---KCVLLTT--GSEVIEFERNNLAKEKLMNQTIS 550 (746)
T ss_pred ccHHHHHHHhcc-ccccCC---eEEEEEc--chhHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999 775444 4555555 3344444432 234444444443
No 28
>PTZ00110 helicase; Provisional
Probab=99.96 E-value=3e-27 Score=269.92 Aligned_cols=318 Identities=17% Similarity=0.247 Sum_probs=218.9
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHH-HHHHHhcC-----CCC-ceEEEecC-cchHHHHHHHHHHc
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGE-----RIS-PHLVVAPL-STLRNWEREFATWA 356 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~-~l~~l~~~-----~~~-~~LIv~P~-~ll~qW~~e~~~~~ 356 (819)
++.|+|.+++..+ ..++++|+..+||+|||++.+. ++..+... +.+ .+|||+|+ .|+.|+.+++.++.
T Consensus 152 ~pt~iQ~~aip~~----l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~ 227 (545)
T PTZ00110 152 EPTPIQVQGWPIA----LSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFG 227 (545)
T ss_pred CCCHHHHHHHHHH----hcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHh
Confidence 5899999998766 6789999999999999998654 34444322 122 58999996 77889999999987
Q ss_pred C--CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccceEE
Q 003450 357 P--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCM 432 (819)
Q Consensus 357 p--~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~l 432 (819)
. .+.+.+.+|........... ...++|+|+|++.+.... ..+......+|
T Consensus 228 ~~~~i~~~~~~gg~~~~~q~~~l--------------------------~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~l 281 (545)
T PTZ00110 228 ASSKIRNTVAYGGVPKRGQIYAL--------------------------RRGVEILIACPGRLIDFLESNVTNLRRVTYL 281 (545)
T ss_pred cccCccEEEEeCCCCHHHHHHHH--------------------------HcCCCEEEECHHHHHHHHHcCCCChhhCcEE
Confidence 4 45666667665544333322 135789999998875432 12223357899
Q ss_pred EecccccccCcc--cHHHHHHHhccc-CcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHH
Q 003450 433 IVDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (819)
Q Consensus 433 IvDEaH~~kn~~--s~~~~~l~~l~~-~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~ 509 (819)
||||||++.... ..+.+.+..+.. ...+++|||.- .++. .+.
T Consensus 282 ViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p----~~v~-------------------------------~l~ 326 (545)
T PTZ00110 282 VLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWP----KEVQ-------------------------------SLA 326 (545)
T ss_pred EeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCC----HHHH-------------------------------HHH
Confidence 999999986533 233444555543 45689999951 1110 010
Q ss_pred HHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCC
Q 003450 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (819)
Q Consensus 510 ~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~ 589 (819)
..++ . .-| ..+.+.... ..... .+++. .
T Consensus 327 ---~~l~----~-----~~~----v~i~vg~~~--l~~~~-------------------------~i~q~----~----- 354 (545)
T PTZ00110 327 ---RDLC----K-----EEP----VHVNVGSLD--LTACH-------------------------NIKQE----V----- 354 (545)
T ss_pred ---HHHh----c-----cCC----EEEEECCCc--cccCC-------------------------CeeEE----E-----
Confidence 0000 0 000 000000000 00000 00000 0
Q ss_pred CCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHH
Q 003450 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (819)
Q Consensus 590 ~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~ 669 (819)
..+....|...|.+++..+...+.++||||+....++.|...|...|++...++|++++++|..+++.
T Consensus 355 ------------~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~ 422 (545)
T PTZ00110 355 ------------FVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNE 422 (545)
T ss_pred ------------EEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHH
Confidence 00112346677777787776678899999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCC
Q 003450 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (819)
Q Consensus 670 F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~ 736 (819)
|+++... +||+|+++++|||++++++||+||+|.++..|+||+||++|.|....+ |.|++.+
T Consensus 423 F~~G~~~---ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~a--i~~~~~~ 484 (545)
T PTZ00110 423 FKTGKSP---IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGAS--YTFLTPD 484 (545)
T ss_pred HhcCCCc---EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEECcc
Confidence 9875543 799999999999999999999999999999999999999999986544 5556654
No 29
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.95 E-value=7.3e-27 Score=264.25 Aligned_cols=313 Identities=17% Similarity=0.268 Sum_probs=219.0
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-CCC-ceEEEecC-cchHHHHHHHHHHc---CC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RIS-PHLVVAPL-STLRNWEREFATWA---PQ 358 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~-~~~-~~LIv~P~-~ll~qW~~e~~~~~---p~ 358 (819)
++.|+|.+++..+ ..++++|+.++||+|||..++..+...... ... .+||++|+ .|..||.+++..+. ++
T Consensus 26 ~~t~iQ~~ai~~~----l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 101 (460)
T PRK11776 26 EMTPIQAQSLPAI----LAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPN 101 (460)
T ss_pred CCCHHHHHHHHHH----hcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 5889999999877 578899999999999998865554443332 222 68999996 78889999988774 57
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccceEEEecc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDE 436 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~lIvDE 436 (819)
+++..++|+.......... ...++|+|+|++.+.... ..+.--++++||+||
T Consensus 102 ~~v~~~~Gg~~~~~~~~~l--------------------------~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDE 155 (460)
T PRK11776 102 IKVLTLCGGVPMGPQIDSL--------------------------EHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDE 155 (460)
T ss_pred cEEEEEECCCChHHHHHHh--------------------------cCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEEC
Confidence 8888888887655443332 136789999999886432 223334678999999
Q ss_pred cccccCcc--cHHHHHHHhccc-CcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHh
Q 003450 437 GHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (819)
Q Consensus 437 aH~~kn~~--s~~~~~l~~l~~-~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~ 513 (819)
||++-..+ ..+...+..+.. ...+++|||+-. . +. .+ ..
T Consensus 156 ad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~-~---~~-------------------------------~l---~~ 197 (460)
T PRK11776 156 ADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPE-G---IA-------------------------------AI---SQ 197 (460)
T ss_pred HHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcH-H---HH-------------------------------HH---HH
Confidence 99985432 334444444443 456999999621 0 00 00 00
Q ss_pred hHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCc
Q 003450 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (819)
Q Consensus 514 ~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~ 593 (819)
.++ .. | . .+.+..... ... + .+.+..
T Consensus 198 ~~~----~~------~--~--~i~~~~~~~----------------------~~~-------i----~~~~~~------- 223 (460)
T PRK11776 198 RFQ----RD------P--V--EVKVESTHD----------------------LPA-------I----EQRFYE------- 223 (460)
T ss_pred Hhc----CC------C--E--EEEECcCCC----------------------CCC-------e----eEEEEE-------
Confidence 000 00 0 0 000000000 000 0 000000
Q ss_pred cCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCC
Q 003450 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (819)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~ 673 (819)
+....|+..|..++... .+.++||||+....++.+.+.|...|+.+..++|++++.+|+.+++.|+++
T Consensus 224 ----------~~~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g 291 (460)
T PRK11776 224 ----------VSPDERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANR 291 (460)
T ss_pred ----------eCcHHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 01223677777777643 356899999999999999999999999999999999999999999999875
Q ss_pred CCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCC
Q 003450 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (819)
Q Consensus 674 ~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~ 736 (819)
.. .+||+|+++++|||++++++||+||.|.++..|.||+||++|.|+... .|.|++.+
T Consensus 292 ~~---~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~--ai~l~~~~ 349 (460)
T PRK11776 292 SC---SVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGL--ALSLVAPE 349 (460)
T ss_pred CC---cEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcce--EEEEEchh
Confidence 44 389999999999999999999999999999999999999999997654 44455544
No 30
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.95 E-value=1e-26 Score=261.84 Aligned_cols=323 Identities=16% Similarity=0.242 Sum_probs=214.2
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHh-cCC-------CCceEEEecC-cchHHHHHHHHHH
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GER-------ISPHLVVAPL-STLRNWEREFATW 355 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~-~~~-------~~~~LIv~P~-~ll~qW~~e~~~~ 355 (819)
.+.|+|.+++..+ ..++++|+..+||+|||+.++..+...+ ... ...+|||+|+ .|..||.+++..+
T Consensus 23 ~pt~iQ~~ai~~i----l~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 23 EPTPIQQQAIPAV----LEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 5889999999876 5688999999999999998766554433 211 1258999996 7788999999887
Q ss_pred cC--CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--ccccCCccceE
Q 003450 356 AP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQC 431 (819)
Q Consensus 356 ~p--~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~ 431 (819)
.. ++.+..+.|..........+ ...++|+|+|++.+... ...+.....++
T Consensus 99 ~~~~~~~~~~~~gg~~~~~~~~~l--------------------------~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 99 SKYLNIRSLVVFGGVSINPQMMKL--------------------------RGGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred hccCCCEEEEEECCcCHHHHHHHH--------------------------cCCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 63 46667777765544322221 13679999999988642 22233346789
Q ss_pred EEecccccccCcc--cHHHHHHHhccc-CcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHH
Q 003450 432 MIVDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (819)
Q Consensus 432 lIvDEaH~~kn~~--s~~~~~l~~l~~-~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l 508 (819)
|||||||++-... ..+...+..+.. ...+++|||+-. .+.++.. .
T Consensus 153 lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~-~~~~l~~------------------~------------- 200 (456)
T PRK10590 153 LVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSD-DIKALAE------------------K------------- 200 (456)
T ss_pred EEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcH-HHHHHHH------------------H-------------
Confidence 9999999985433 223344444543 347999999621 1111100 0
Q ss_pred HHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCC
Q 003450 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (819)
Q Consensus 509 ~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~ 588 (819)
.+ .......+.-..+. . . .+.+ + +.
T Consensus 201 --~~----------------~~~~~i~~~~~~~~---------------------~--~-------~i~~---~-~~--- 225 (456)
T PRK10590 201 --LL----------------HNPLEIEVARRNTA---------------------S--E-------QVTQ---H-VH--- 225 (456)
T ss_pred --Hc----------------CCCeEEEEeccccc---------------------c--c-------ceeE---E-EE---
Confidence 00 00000000000000 0 0 0000 0 00
Q ss_pred CCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHH
Q 003450 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (819)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~ 668 (819)
.+....|..+|..++.. ...+++|||++.....+.|.+.|...|+.+..++|+++..+|..+++
T Consensus 226 --------------~~~~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~ 289 (456)
T PRK10590 226 --------------FVDKKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALA 289 (456)
T ss_pred --------------EcCHHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
Confidence 00011233333333332 23468999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 003450 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 747 (819)
Q Consensus 669 ~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~ 747 (819)
.|.++.. .+||+|+++++|||++++++||+||+|.++..|+|++||++|.|....+.+ |++.+ |..++...+
T Consensus 290 ~F~~g~~---~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~--l~~~~--d~~~~~~ie 361 (456)
T PRK10590 290 DFKSGDI---RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALS--LVCVD--EHKLLRDIE 361 (456)
T ss_pred HHHcCCC---cEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEE--EecHH--HHHHHHHHH
Confidence 9987543 489999999999999999999999999999999999999999998765443 34433 444444433
No 31
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.95 E-value=1e-26 Score=264.95 Aligned_cols=313 Identities=16% Similarity=0.207 Sum_probs=211.4
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHH-HHhc-------C-CCCceEEEecC-cchHHHHHHHHH
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFG-------E-RISPHLVVAPL-STLRNWEREFAT 354 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~-~l~~-------~-~~~~~LIv~P~-~ll~qW~~e~~~ 354 (819)
.+.|+|.+++..+ ..++++|+..+||+|||+.++..+. .+.. . ....+|||+|+ .|..|+.+++..
T Consensus 143 ~ptpiQ~~aip~i----l~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~ 218 (518)
T PLN00206 143 FPTPIQMQAIPAA----LSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKV 218 (518)
T ss_pred CCCHHHHHHHHHH----hcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 5889999999876 5789999999999999998765443 3321 1 12378999996 677888888887
Q ss_pred HcCC--CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccce
Q 003450 355 WAPQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQ 430 (819)
Q Consensus 355 ~~p~--~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~ 430 (819)
+... +.+..+.|+......+... ...++|+|+|++.+.... ..+......
T Consensus 219 l~~~~~~~~~~~~gG~~~~~q~~~l--------------------------~~~~~IiV~TPgrL~~~l~~~~~~l~~v~ 272 (518)
T PLN00206 219 LGKGLPFKTALVVGGDAMPQQLYRI--------------------------QQGVELIVGTPGRLIDLLSKHDIELDNVS 272 (518)
T ss_pred HhCCCCceEEEEECCcchHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCccchhee
Confidence 7643 4555566554433322221 135789999999875321 123334567
Q ss_pred EEEecccccccCc--ccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHH
Q 003450 431 CMIVDEGHRLKNK--DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (819)
Q Consensus 431 ~lIvDEaH~~kn~--~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l 508 (819)
+||+||||++... .......+..+.....+++|||.-. .+. .+...+..+.
T Consensus 273 ~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~-~v~---~l~~~~~~~~----------------------- 325 (518)
T PLN00206 273 VLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVSP-EVE---KFASSLAKDI----------------------- 325 (518)
T ss_pred EEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCH-HHH---HHHHHhCCCC-----------------------
Confidence 9999999998543 2344455556667788999999621 100 0000000000
Q ss_pred HHHHhhHHHHHhhhhhh-hcCCCc--eEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcc
Q 003450 509 HRMLAPHLLRRVKKDVM-KELPPK--KELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (819)
Q Consensus 509 ~~~l~~~~lrr~k~dv~-~~lp~~--~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l 585 (819)
+ .-.+. ...+.. ....+.+
T Consensus 326 -------~----~i~~~~~~~~~~~v~q~~~~~----------------------------------------------- 347 (518)
T PLN00206 326 -------I----LISIGNPNRPNKAVKQLAIWV----------------------------------------------- 347 (518)
T ss_pred -------E----EEEeCCCCCCCcceeEEEEec-----------------------------------------------
Confidence 0 00000 000000 0001111
Q ss_pred cCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhh-CCCeEEEEeccCChHHHH
Q 003450 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQ 664 (819)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~-~g~~~~~l~G~~~~~~R~ 664 (819)
....|...|.+++........++|||++.....+.|.+.|.. .|+++..++|+++..+|.
T Consensus 348 -------------------~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~ 408 (518)
T PLN00206 348 -------------------ETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERR 408 (518)
T ss_pred -------------------cchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHH
Confidence 112234445555554433456899999999999999999974 699999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCC
Q 003450 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (819)
Q Consensus 665 ~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~ 736 (819)
.+++.|.++... +|++|+++++|||++.+++||+||+|.++..|+||+||++|.|....+ +.|++.+
T Consensus 409 ~il~~Fr~G~~~---ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~a--i~f~~~~ 475 (518)
T PLN00206 409 EVMKSFLVGEVP---VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTA--IVFVNEE 475 (518)
T ss_pred HHHHHHHCCCCC---EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEE--EEEEchh
Confidence 999999876543 899999999999999999999999999999999999999999976444 4455543
No 32
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=1.6e-26 Score=261.02 Aligned_cols=308 Identities=18% Similarity=0.170 Sum_probs=210.2
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEE
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~ 362 (819)
..++|+|.+++..+ ..++++++.++||+|||+.++..+.. ..+.+|||+|+ +|+.++.+.+... ++.+.
T Consensus 10 ~~~r~~Q~~ai~~~----l~g~dvlv~apTGsGKTl~y~lp~l~----~~~~~lVi~P~~~L~~dq~~~l~~~--gi~~~ 79 (470)
T TIGR00614 10 SSFRPVQLEVINAV----LLGRDCFVVMPTGGGKSLCYQLPALC----SDGITLVISPLISLMEDQVLQLKAS--GIPAT 79 (470)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCCcHhHHHHHHHHH----cCCcEEEEecHHHHHHHHHHHHHHc--CCcEE
Confidence 36999999999876 56789999999999999876444332 23479999996 7888898888865 45566
Q ss_pred EEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc---ccc-CCccceEEEecccc
Q 003450 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASL-KPIKWQCMIVDEGH 438 (819)
Q Consensus 363 ~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~---~~l-~~~~~~~lIvDEaH 438 (819)
.+.+..........+. ......++++++|++.+.... ..+ ...++.+|||||||
T Consensus 80 ~l~~~~~~~~~~~i~~----------------------~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH 137 (470)
T TIGR00614 80 FLNSSQSKEQQKNVLT----------------------DLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAH 137 (470)
T ss_pred EEeCCCCHHHHHHHHH----------------------HHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCc
Confidence 6666544332111110 001246789999999886432 222 34477899999999
Q ss_pred cccCccc-------HHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHH
Q 003450 439 RLKNKDS-------KLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (819)
Q Consensus 439 ~~kn~~s-------~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~ 511 (819)
.+...+. .+......+.....++|||||-.....++...+.+-.|..+... |
T Consensus 138 ~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s------~--------------- 196 (470)
T TIGR00614 138 CISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS------F--------------- 196 (470)
T ss_pred ccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC------C---------------
Confidence 9854321 11122223455678999999854444444443333222111000 0
Q ss_pred HhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCC
Q 003450 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (819)
Q Consensus 512 l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~ 591 (819)
.-|.. .+.+.-.
T Consensus 197 ---------------~r~nl-~~~v~~~---------------------------------------------------- 208 (470)
T TIGR00614 197 ---------------DRPNL-YYEVRRK---------------------------------------------------- 208 (470)
T ss_pred ---------------CCCCc-EEEEEeC----------------------------------------------------
Confidence 00000 0000000
Q ss_pred CccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhc
Q 003450 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (819)
Q Consensus 592 ~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~ 671 (819)
.+..+..+.+.+.. ...++++||||+.....+.+.+.|...|+++..++|+++.++|..+++.|.
T Consensus 209 --------------~~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~ 273 (470)
T TIGR00614 209 --------------TPKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQ 273 (470)
T ss_pred --------------CccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHH
Confidence 00112222222222 124677899999999999999999999999999999999999999999998
Q ss_pred CCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEE
Q 003450 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (819)
Q Consensus 672 ~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~ 730 (819)
++.. .+|++|.+.|+|||++++++||+|++|.++..|.|++||++|.|+...+.+|
T Consensus 274 ~g~~---~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 274 RDEI---QVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred cCCC---cEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 6543 3899999999999999999999999999999999999999999988766554
No 33
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=2.7e-26 Score=260.30 Aligned_cols=314 Identities=18% Similarity=0.268 Sum_probs=213.6
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH-HHHhcCC--------CCceEEEecC-cchHHHHHHHHH
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGER--------ISPHLVVAPL-STLRNWEREFAT 354 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l-~~l~~~~--------~~~~LIv~P~-~ll~qW~~e~~~ 354 (819)
.++++|.+++..+ ..|+++|+..+||+|||+..+..+ ..+.... ...+|||+|+ .|..|+.+++..
T Consensus 109 ~~~~iQ~~ai~~~----~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~ 184 (475)
T PRK01297 109 YCTPIQAQVLGYT----LAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 184 (475)
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 5899999999876 678999999999999998865544 4443321 2378999996 788899998887
Q ss_pred HcC--CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhccc--ccCCccce
Q 003450 355 WAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQ 430 (819)
Q Consensus 355 ~~p--~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~ 430 (819)
+.. ++++..++|+.......+... ...++|+|+|++++..... .+..-+.+
T Consensus 185 l~~~~~~~v~~~~gg~~~~~~~~~~~-------------------------~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~ 239 (475)
T PRK01297 185 LTKYTGLNVMTFVGGMDFDKQLKQLE-------------------------ARFCDILVATPGRLLDFNQRGEVHLDMVE 239 (475)
T ss_pred hhccCCCEEEEEEccCChHHHHHHHh-------------------------CCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 753 577888888765444333321 1357899999999864321 12223567
Q ss_pred EEEecccccccCcc--cHHHHHHHhcc---cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHH
Q 003450 431 CMIVDEGHRLKNKD--SKLFSSLKQYS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (819)
Q Consensus 431 ~lIvDEaH~~kn~~--s~~~~~l~~l~---~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~ 505 (819)
+|||||||++.+.+ ..+...+..+. ....+++|||... ++.++.. .
T Consensus 240 ~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~-~~~~~~~------------------~---------- 290 (475)
T PRK01297 240 VMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTD-DVMNLAK------------------Q---------- 290 (475)
T ss_pred eEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCH-HHHHHHH------------------H----------
Confidence 99999999996543 22333344332 2457999999521 1111100 0
Q ss_pred HHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcc
Q 003450 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (819)
Q Consensus 506 ~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l 585 (819)
+. ..+ ..+.+.... ..... +. .|-+
T Consensus 291 ---------~~-----------~~~---~~v~~~~~~---------------------~~~~~-------~~---~~~~- 315 (475)
T PRK01297 291 ---------WT-----------TDP---AIVEIEPEN---------------------VASDT-------VE---QHVY- 315 (475)
T ss_pred ---------hc-----------cCC---EEEEeccCc---------------------CCCCc-------cc---EEEE-
Confidence 00 000 000000000 00000 00 0000
Q ss_pred cCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHH
Q 003450 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (819)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~ 665 (819)
.+..+.|...|..++.. ....++||||+....++.|.+.|...|+.+..++|+++.++|.+
T Consensus 316 -----------------~~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~ 376 (475)
T PRK01297 316 -----------------AVAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIK 376 (475)
T ss_pred -----------------EecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHH
Confidence 01123455555555543 23569999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeC
Q 003450 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (819)
Q Consensus 666 ~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~ 735 (819)
+++.|+++.. .+|++|+++++|||++++++||+|++|+++..|+|+.||++|.|+...+ +-|+..
T Consensus 377 ~~~~Fr~G~~---~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~--i~~~~~ 441 (475)
T PRK01297 377 TLEGFREGKI---RVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVS--ISFAGE 441 (475)
T ss_pred HHHHHhCCCC---cEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceE--EEEecH
Confidence 9999987543 3899999999999999999999999999999999999999999986544 334443
No 34
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=1.2e-26 Score=259.59 Aligned_cols=313 Identities=16% Similarity=0.217 Sum_probs=213.7
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHH-HhcC--------CCCceEEEecC-cchHHHHHHHHH
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLAS-LFGE--------RISPHLVVAPL-STLRNWEREFAT 354 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~-l~~~--------~~~~~LIv~P~-~ll~qW~~e~~~ 354 (819)
.+.|.|.+++..+ ..++++|+.++||+|||+.++..+.. +... ....+||++|+ .|+.|+.+++..
T Consensus 30 ~pt~iQ~~aip~i----l~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 30 NCTPIQALALPLT----LAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCHHHHHHHHHH----hCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 5789999999866 67899999999999999987655443 3321 11368999996 777899888877
Q ss_pred HcC--CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccce
Q 003450 355 WAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQ 430 (819)
Q Consensus 355 ~~p--~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~ 430 (819)
+.. ++++..++|+.......... ...++|+|+|++.+.... ..+..-.+.
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~~~l--------------------------~~~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQLKVL--------------------------ESGVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred HhccCCceEEEEECCCCHHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCccccccc
Confidence 753 67888888876544332221 135789999999886432 233344678
Q ss_pred EEEecccccccCcc--cHHHHHHHhcc---cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHH
Q 003450 431 CMIVDEGHRLKNKD--SKLFSSLKQYS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (819)
Q Consensus 431 ~lIvDEaH~~kn~~--s~~~~~l~~l~---~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~ 505 (819)
+||+||||++-... ..+...+..+. ....+++|||.-. .+.++
T Consensus 160 ~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~-~~~~~------------------------------- 207 (423)
T PRK04837 160 VVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSY-RVREL------------------------------- 207 (423)
T ss_pred EEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCH-HHHHH-------------------------------
Confidence 99999999985533 22333344443 2235889999621 00000
Q ss_pred HHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcc
Q 003450 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (819)
Q Consensus 506 ~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l 585 (819)
... .+..... +.+.-... ... .+ .+.++
T Consensus 208 ------~~~------------~~~~p~~--i~v~~~~~-------------------~~~---------~i----~~~~~ 235 (423)
T PRK04837 208 ------AFE------------HMNNPEY--VEVEPEQK-------------------TGH---------RI----KEELF 235 (423)
T ss_pred ------HHH------------HCCCCEE--EEEcCCCc-------------------CCC---------ce----eEEEE
Confidence 000 0000000 00000000 000 00 00000
Q ss_pred cCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHH
Q 003450 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (819)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~ 665 (819)
. .....|+..|..++.. ....++|||++....++.|.+.|...|+++..++|+++..+|.+
T Consensus 236 ~-----------------~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~ 296 (423)
T PRK04837 236 Y-----------------PSNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLR 296 (423)
T ss_pred e-----------------CCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHH
Confidence 0 0112356666666654 23679999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeC
Q 003450 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (819)
Q Consensus 666 ~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~ 735 (819)
+++.|+++... +|++|+++++|||++++++||+||+|.++..|+||+||++|.|+...+ +-|+++
T Consensus 297 ~l~~F~~g~~~---vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~a--i~~~~~ 361 (423)
T PRK04837 297 ILEEFTRGDLD---ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHS--ISLACE 361 (423)
T ss_pred HHHHHHcCCCc---EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeE--EEEeCH
Confidence 99999876543 899999999999999999999999999999999999999999977544 445544
No 35
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=3.5e-26 Score=247.04 Aligned_cols=312 Identities=20% Similarity=0.302 Sum_probs=228.4
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhc------CCCCc-eEEEecC-cchHHHHHHHHHH
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFG------ERISP-HLVVAPL-STLRNWEREFATW 355 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~-i~~l~~l~~------~~~~~-~LIv~P~-~ll~qW~~e~~~~ 355 (819)
.+.|-|..+...+ ..|++++..+.||+|||+.. +-++.++.. .+.+| +||++|+ .|..|-.+++..+
T Consensus 113 ~PtpIQaq~wp~~----l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIA----LSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhccccee----ccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 5777888876544 67899999999999999985 445555554 12234 8999997 7778889999998
Q ss_pred cCCCe--EEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--ccccCCccceE
Q 003450 356 APQMN--VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQC 431 (819)
Q Consensus 356 ~p~~~--v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~ 431 (819)
...+. .++++|.......++..+ ...+|+|+|++.+... ...+..-+..+
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~~~l~--------------------------~gvdiviaTPGRl~d~le~g~~~l~~v~y 242 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQLRDLE--------------------------RGVDVVIATPGRLIDLLEEGSLNLSRVTY 242 (519)
T ss_pred cCCCCccEEEEeCCCCccHHHHHHh--------------------------cCCcEEEeCChHHHHHHHcCCccccceeE
Confidence 86544 777778776666665542 4689999999999753 34445557789
Q ss_pred EEeccccccc--CcccHHHHHHHhc-ccCc-EEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHH
Q 003450 432 MIVDEGHRLK--NKDSKLFSSLKQY-STRH-RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (819)
Q Consensus 432 lIvDEaH~~k--n~~s~~~~~l~~l-~~~~-~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~ 507 (819)
+|+|||+++- +...++.+.+..+ .... .++-|||=
T Consensus 243 lVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTw----------------------------------------- 281 (519)
T KOG0331|consen 243 LVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATW----------------------------------------- 281 (519)
T ss_pred EEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeec-----------------------------------------
Confidence 9999999994 4567888888888 4443 67888882
Q ss_pred HHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccC
Q 003450 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (819)
Q Consensus 508 l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~ 587 (819)
|--+|.+..+.+. -+....+... ..+++ ...++|+
T Consensus 282 ------p~~v~~lA~~fl~--~~~~i~ig~~---~~~~a--------------------------~~~i~qi-------- 316 (519)
T KOG0331|consen 282 ------PKEVRQLAEDFLN--NPIQINVGNK---KELKA--------------------------NHNIRQI-------- 316 (519)
T ss_pred ------cHHHHHHHHHHhc--CceEEEecch---hhhhh--------------------------hcchhhh--------
Confidence 0011111112111 1111111111 00000 0001111
Q ss_pred CCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHH-hcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHH
Q 003450 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK-EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (819)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~-~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~ 666 (819)
-..+....|...|.++|..+. ..+.|+||||+.....+.|...|...|++..-|||+.++.+|..+
T Consensus 317 -------------ve~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~ 383 (519)
T KOG0331|consen 317 -------------VEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWV 383 (519)
T ss_pred -------------hhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHH
Confidence 111224568888899998887 445699999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEE
Q 003450 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (819)
Q Consensus 667 i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 728 (819)
++.|.++... +||+|+.+++|||++++++||+||+|-|...|+||+||.+|.|++-...
T Consensus 384 L~~FreG~~~---vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~ 442 (519)
T KOG0331|consen 384 LKGFREGKSP---VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAI 442 (519)
T ss_pred HHhcccCCcc---eEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEE
Confidence 9999876655 8999999999999999999999999999999999999999988876543
No 36
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.95 E-value=6.2e-26 Score=255.11 Aligned_cols=312 Identities=15% Similarity=0.194 Sum_probs=211.3
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHH-HHhc-----CCCCceEEEecC-cchHHHHHHHHHHc
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFG-----ERISPHLVVAPL-STLRNWEREFATWA 356 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~-~l~~-----~~~~~~LIv~P~-~ll~qW~~e~~~~~ 356 (819)
.+++++|.+++..+ ..++++|+..+||+|||+.++..+. .+.. .+...+||++|+ .|+.|+.+.+..+.
T Consensus 22 ~~p~~iQ~~ai~~~----~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~ 97 (434)
T PRK11192 22 TRPTAIQAEAIPPA----LDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA 97 (434)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH
Confidence 35889999999876 4678999999999999988755443 3332 122479999996 67788888877765
Q ss_pred C--CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--ccccCCccceEE
Q 003450 357 P--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCM 432 (819)
Q Consensus 357 p--~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~l 432 (819)
. ++++..++|+.........+ ...++|+|+|++.+... ...+....+++|
T Consensus 98 ~~~~~~v~~~~gg~~~~~~~~~l--------------------------~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~l 151 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNHAEVF--------------------------SENQDIVVATPGRLLQYIKEENFDCRAVETL 151 (434)
T ss_pred ccCCcEEEEEECCCCHHHHHHHh--------------------------cCCCCEEEEChHHHHHHHHcCCcCcccCCEE
Confidence 3 67888888876554322221 13578999999988643 223334467899
Q ss_pred EecccccccCcc--cHHHHHHHhcc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHH
Q 003450 433 IVDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (819)
Q Consensus 433 IvDEaH~~kn~~--s~~~~~l~~l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~ 509 (819)
|+||||++...+ ..+......+. ....+++|||+-...+.++.. .
T Consensus 152 ViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~------------------~-------------- 199 (434)
T PRK11192 152 ILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAE------------------R-------------- 199 (434)
T ss_pred EEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHH------------------H--------------
Confidence 999999986432 22223333333 345689999973111111100 0
Q ss_pred HHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCC
Q 003450 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (819)
Q Consensus 510 ~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~ 589 (819)
+ +.... .+.+....... ....+-+....
T Consensus 200 --~---------------~~~~~--~i~~~~~~~~~--------------------------------~~i~~~~~~~~- 227 (434)
T PRK11192 200 --L---------------LNDPV--EVEAEPSRRER--------------------------------KKIHQWYYRAD- 227 (434)
T ss_pred --H---------------ccCCE--EEEecCCcccc--------------------------------cCceEEEEEeC-
Confidence 0 00000 00010000000 00000000000
Q ss_pred CCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHH
Q 003450 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (819)
Q Consensus 590 ~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~ 669 (819)
....|...|..++.. ....++|||++....++.|...|...|+++..++|+++..+|..+++.
T Consensus 228 ---------------~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~ 290 (434)
T PRK11192 228 ---------------DLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKR 290 (434)
T ss_pred ---------------CHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHH
Confidence 012355555555543 246799999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEE
Q 003450 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (819)
Q Consensus 670 F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v 729 (819)
|+++.. .+|++|+++++|||++.+++||+||+|+++..|+||+||++|.|....+.+
T Consensus 291 f~~G~~---~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 291 LTDGRV---NVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred HhCCCC---cEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 987543 489999999999999999999999999999999999999999998765544
No 37
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.1e-26 Score=234.55 Aligned_cols=317 Identities=21% Similarity=0.287 Sum_probs=234.4
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHH-HHHHHHHHhcCCCC-ceEEEecC-cchHHHHHHHHHHc--CCC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERIS-PHLVVAPL-STLRNWEREFATWA--PQM 359 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~-~i~~l~~l~~~~~~-~~LIv~P~-~ll~qW~~e~~~~~--p~~ 359 (819)
.+.+.|.+++-.+ ..|+.+|.+.+||+|||.. ++-++..|+++... ..||++|. .+..|-...|+.++ .++
T Consensus 83 ~PT~IQ~~aiP~~----L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~igl 158 (476)
T KOG0330|consen 83 KPTKIQSEAIPVA----LGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGL 158 (476)
T ss_pred CCchhhhhhcchh----hCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCe
Confidence 4677899998766 7899999999999999988 56677788776544 67999997 55667777788875 378
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccc---cCCccceEEEecc
Q 003450 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS---LKPIKWQCMIVDE 436 (819)
Q Consensus 360 ~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~---l~~~~~~~lIvDE 436 (819)
.+.++.|+.+........ ..++||+|+|++.+...... |..-...++|+||
T Consensus 159 r~~~lvGG~~m~~q~~~L--------------------------~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQANQL--------------------------SKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred EEEEEecCchHHHHHHHh--------------------------hcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 888999998877665553 24789999999999865443 3333567899999
Q ss_pred cccccCcc--cHHHHHHHhcccCc-EEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHh
Q 003450 437 GHRLKNKD--SKLFSSLKQYSTRH-RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (819)
Q Consensus 437 aH~~kn~~--s~~~~~l~~l~~~~-~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~ 513 (819)
|+++-+.. ..+-+.+..++..+ .+|.|||-. ..+.+|...
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt-----------------------------------~kv~kL~ra-- 255 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATMT-----------------------------------KKVRKLQRA-- 255 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeecc-----------------------------------hhhHHHHhh--
Confidence 99998744 45667777776554 478899831 112222100
Q ss_pred hHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCc
Q 003450 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (819)
Q Consensus 514 ~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~ 593 (819)
.+-.. +.|.-+. .| ..+..+.|. |++
T Consensus 256 -------------sl~~p----~~v~~s~----ky----------------------~tv~~lkQ~----ylf------- 281 (476)
T KOG0330|consen 256 -------------SLDNP----VKVAVSS----KY----------------------QTVDHLKQT----YLF------- 281 (476)
T ss_pred -------------ccCCC----eEEeccc----hh----------------------cchHHhhhh----eEe-------
Confidence 00000 0111110 01 111111110 111
Q ss_pred cCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCC
Q 003450 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (819)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~ 673 (819)
+....|-..|..||.++. |..+||||+.....+.+.-+|+..|+....++|.|++..|..+++.|+++
T Consensus 282 ----------v~~k~K~~yLV~ll~e~~--g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~ 349 (476)
T KOG0330|consen 282 ----------VPGKDKDTYLVYLLNELA--GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG 349 (476)
T ss_pred ----------ccccccchhHHHHHHhhc--CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc
Confidence 123446667788887654 68999999999999999999999999999999999999999999999876
Q ss_pred CCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHH
Q 003450 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (819)
Q Consensus 674 ~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvE 739 (819)
..+ +|++|+.+++|+|++.+++||+||.|-+...|++|.||+.|.| +.-.+..||+...+|
T Consensus 350 ~r~---iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 350 ARS---ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVE 410 (476)
T ss_pred CCc---EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEehhhhH
Confidence 544 8999999999999999999999999999999999999999999 556677888885444
No 38
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.95 E-value=8.9e-26 Score=259.88 Aligned_cols=311 Identities=17% Similarity=0.226 Sum_probs=214.6
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH-HHHhcCC-CCceEEEecC-cchHHHHHHHHHHc---C
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGER-ISPHLVVAPL-STLRNWEREFATWA---P 357 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l-~~l~~~~-~~~~LIv~P~-~ll~qW~~e~~~~~---p 357 (819)
.++.|+|.+++..+ ..++++|+..+||+|||++.+..+ ..+.... ...+||+||+ .|+.|+.+++..+. +
T Consensus 27 ~~ptpiQ~~ai~~l----l~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 27 EKPSPIQAECIPHL----LNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 36899999999877 567899999999999998865444 3333222 2378999996 78899999987764 5
Q ss_pred CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--ccccCCccceEEEec
Q 003450 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVD 435 (819)
Q Consensus 358 ~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~lIvD 435 (819)
+++++.++|.......++.. ...++|||+|++.+... ...+..-+..+||||
T Consensus 103 ~i~v~~~~gG~~~~~q~~~l--------------------------~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlD 156 (629)
T PRK11634 103 GVNVVALYGGQRYDVQLRAL--------------------------RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLD 156 (629)
T ss_pred CceEEEEECCcCHHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCcchhhceEEEec
Confidence 78888888876554433332 13578999999988643 222333467789999
Q ss_pred ccccccCcc--cHHHHHHHhccc-CcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHH
Q 003450 436 EGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 512 (819)
Q Consensus 436 EaH~~kn~~--s~~~~~l~~l~~-~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l 512 (819)
|||.+-+.. ..+...+..++. ...+++|||.-. .+.+ +.
T Consensus 157 EAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~-~i~~-------------------------------------i~ 198 (629)
T PRK11634 157 EADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPE-AIRR-------------------------------------IT 198 (629)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCCh-hHHH-------------------------------------HH
Confidence 999885433 334455555643 456899999510 0000 00
Q ss_pred hhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCC
Q 003450 513 APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (819)
Q Consensus 513 ~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~ 592 (819)
..+ +..... +.+.-.. .... ...+.|.
T Consensus 199 ~~~------------l~~~~~--i~i~~~~---------------------~~~~-----------~i~q~~~------- 225 (629)
T PRK11634 199 RRF------------MKEPQE--VRIQSSV---------------------TTRP-----------DISQSYW------- 225 (629)
T ss_pred HHH------------cCCCeE--EEccCcc---------------------ccCC-----------ceEEEEE-------
Confidence 000 000000 0000000 0000 0000000
Q ss_pred ccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcC
Q 003450 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (819)
Q Consensus 593 ~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~ 672 (819)
.+....|...|..+|.. ....++||||+.....+.|.+.|...|+.+..++|.+++.+|..++++|.+
T Consensus 226 ----------~v~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~ 293 (629)
T PRK11634 226 ----------TVWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 (629)
T ss_pred ----------EechhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC
Confidence 00122355666666654 234689999999999999999999999999999999999999999999987
Q ss_pred CCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEE
Q 003450 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (819)
Q Consensus 673 ~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~ 730 (819)
+.. .+||+|+++++|||++.+++||+||+|.++..|+|++||++|.|....+.++
T Consensus 294 G~~---~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~ 348 (629)
T PRK11634 294 GRL---DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLF 348 (629)
T ss_pred CCC---CEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEE
Confidence 544 3899999999999999999999999999999999999999999986654433
No 39
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=6e-26 Score=260.03 Aligned_cols=308 Identities=17% Similarity=0.265 Sum_probs=211.3
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHH-HhcC------C--CCceEEEecC-cchHHHHHHHHH
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLAS-LFGE------R--ISPHLVVAPL-STLRNWEREFAT 354 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~-l~~~------~--~~~~LIv~P~-~ll~qW~~e~~~ 354 (819)
.+.|.|..++..+ ..++++|+..+||+|||+.++..+.. +... . ...+|||+|+ .|+.|+.+++.+
T Consensus 31 ~ptpiQ~~~ip~~----l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 31 RCTPIQALTLPVA----LPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCHHHHHHHHHH----hCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 6899999999877 67899999999999999987665544 3221 1 2379999996 777899999988
Q ss_pred HcC--CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhccc---ccCCccc
Q 003450 355 WAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIKW 429 (819)
Q Consensus 355 ~~p--~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~---~l~~~~~ 429 (819)
+.. ++.+..++|........... ...++|+|+|++.+..... .+.....
T Consensus 107 l~~~~~i~v~~l~Gg~~~~~q~~~l--------------------------~~~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 107 FGADLGLRFALVYGGVDYDKQRELL--------------------------QQGVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred HhccCCceEEEEECCCCHHHHHHHH--------------------------hCCCCEEEECHHHHHHHHHhccccchhhe
Confidence 874 46677788876544322221 1257899999998865322 2333456
Q ss_pred eEEEecccccccCcc--cHHHHHHHhcc---cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHH
Q 003450 430 QCMIVDEGHRLKNKD--SKLFSSLKQYS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ 504 (819)
Q Consensus 430 ~~lIvDEaH~~kn~~--s~~~~~l~~l~---~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~ 504 (819)
++|||||||++-... ..+...+..+. ....+++|||.-. .+.++
T Consensus 161 ~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~-~v~~l------------------------------ 209 (572)
T PRK04537 161 EICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSH-RVLEL------------------------------ 209 (572)
T ss_pred eeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccH-HHHHH------------------------------
Confidence 789999999985422 22333344443 3457899999521 11000
Q ss_pred HHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEec-CCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCC
Q 003450 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVE-LSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHP 583 (819)
Q Consensus 505 ~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~-ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp 583 (819)
...++ . -|. ...+... .+. ..+++.
T Consensus 210 -------~~~~l----~------~p~--~i~v~~~~~~~-------------------------------~~i~q~---- 235 (572)
T PRK04537 210 -------AYEHM----N------EPE--KLVVETETITA-------------------------------ARVRQR---- 235 (572)
T ss_pred -------HHHHh----c------CCc--EEEeccccccc-------------------------------cceeEE----
Confidence 00000 0 000 0000000 000 000000
Q ss_pred cccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHH
Q 003450 584 YMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAER 663 (819)
Q Consensus 584 ~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R 663 (819)
+.+ .....|+..|..++.. ..+.++||||+....++.|.+.|...|+.+..++|+++..+|
T Consensus 236 ~~~-----------------~~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR 296 (572)
T PRK04537 236 IYF-----------------PADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKR 296 (572)
T ss_pred EEe-----------------cCHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 000 0012345555555543 347799999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEE
Q 003450 664 QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (819)
Q Consensus 664 ~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v 729 (819)
..+++.|+++.. .+||+|+++++|||++.+++||+||.|+++..|+|++||++|.|....+..
T Consensus 297 ~~il~~Fr~G~~---~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~ 359 (572)
T PRK04537 297 ESLLNRFQKGQL---EILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAIS 359 (572)
T ss_pred HHHHHHHHcCCC---eEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEE
Confidence 999999986543 489999999999999999999999999999999999999999998765443
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.94 E-value=3.1e-25 Score=257.02 Aligned_cols=303 Identities=18% Similarity=0.165 Sum_probs=207.0
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEEE
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVM 363 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~~ 363 (819)
+++|+|.+++..+ ..++++++..+||+|||+.++..+.. . .+.+|||+|. +++.++.+.+... +..+..
T Consensus 25 ~~r~~Q~~ai~~i----l~g~dvlv~apTGsGKTl~y~lpal~--~--~g~tlVisPl~sL~~dqv~~l~~~--gi~~~~ 94 (607)
T PRK11057 25 QFRPGQQEIIDAV----LSGRDCLVVMPTGGGKSLCYQIPALV--L--DGLTLVVSPLISLMKDQVDQLLAN--GVAAAC 94 (607)
T ss_pred CCCHHHHHHHHHH----HcCCCEEEEcCCCchHHHHHHHHHHH--c--CCCEEEEecHHHHHHHHHHHHHHc--CCcEEE
Confidence 6999999999876 57889999999999999876544332 2 3479999996 7888888888765 455555
Q ss_pred EecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--ccccCCccceEEEeccccccc
Q 003450 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRLK 441 (819)
Q Consensus 364 ~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~lIvDEaH~~k 441 (819)
+.+..........+. .......+++++|++.+... ...+...++++|||||||.+-
T Consensus 95 ~~s~~~~~~~~~~~~----------------------~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~ 152 (607)
T PRK11057 95 LNSTQTREQQLEVMA----------------------GCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCIS 152 (607)
T ss_pred EcCCCCHHHHHHHHH----------------------HHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccc
Confidence 555543322211110 00124578999999988632 233444578899999999985
Q ss_pred Cccc---HHHHHHH----hcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhh
Q 003450 442 NKDS---KLFSSLK----QYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (819)
Q Consensus 442 n~~s---~~~~~l~----~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~ 514 (819)
..+. ..+..+. .+.....++||||+-.....++...+.+-+|..+...
T Consensus 153 ~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~------------------------- 207 (607)
T PRK11057 153 QWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS------------------------- 207 (607)
T ss_pred cccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECC-------------------------
Confidence 4321 1222232 2345568999999854443334333332222110000
Q ss_pred HHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCcc
Q 003450 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (819)
Q Consensus 515 ~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~ 594 (819)
. .-|.....+
T Consensus 208 ---------~--~r~nl~~~v----------------------------------------------------------- 217 (607)
T PRK11057 208 ---------F--DRPNIRYTL----------------------------------------------------------- 217 (607)
T ss_pred ---------C--CCCcceeee-----------------------------------------------------------
Confidence 0 000000000
Q ss_pred CcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCC
Q 003450 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (819)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~ 674 (819)
.....++..+...+.. ..+.++||||+.+...+.+...|...|+++..++|+++.++|.++++.|..+.
T Consensus 218 ---------~~~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~ 286 (607)
T PRK11057 218 ---------VEKFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDD 286 (607)
T ss_pred ---------eeccchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCC
Confidence 0001112222233322 34789999999999999999999999999999999999999999999998754
Q ss_pred CCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEE
Q 003450 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (819)
Q Consensus 675 ~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 728 (819)
. .+|++|.+.|+|||+++++.||+||+|.+...|.|++||++|.|....+.
T Consensus 287 ~---~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~i 337 (607)
T PRK11057 287 L---QIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM 337 (607)
T ss_pred C---CEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEE
Confidence 3 38999999999999999999999999999999999999999999776543
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.94 E-value=7e-25 Score=255.00 Aligned_cols=304 Identities=19% Similarity=0.215 Sum_probs=211.9
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEE
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~ 362 (819)
.+++|+|.++++.+ ..+++++++++||+|||+.+...+. .. .+.++||+|. +++.++.+.+... +..+.
T Consensus 12 ~~fr~~Q~~~i~~i----l~g~dvlv~~PTG~GKTl~y~lpal--~~--~g~~lVisPl~sL~~dq~~~l~~~--gi~~~ 81 (591)
T TIGR01389 12 DDFRPGQEEIISHV----LDGRDVLVVMPTGGGKSLCYQVPAL--LL--KGLTVVISPLISLMKDQVDQLRAA--GVAAA 81 (591)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCccHhHHHHHHHH--Hc--CCcEEEEcCCHHHHHHHHHHHHHc--CCcEE
Confidence 36999999999877 5678999999999999988754433 22 3578999996 7888898888875 56677
Q ss_pred EEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--ccccCCccceEEEecccccc
Q 003450 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRL 440 (819)
Q Consensus 363 ~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~lIvDEaH~~ 440 (819)
.++++........... .......+++++|++.+... ...+...+.++|||||||.+
T Consensus 82 ~~~s~~~~~~~~~~~~----------------------~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i 139 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEK----------------------ALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCV 139 (591)
T ss_pred EEeCCCCHHHHHHHHH----------------------HHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCccc
Confidence 7776654332211110 00124678999999988542 23345567899999999998
Q ss_pred cCccc-------HHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHh
Q 003450 441 KNKDS-------KLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (819)
Q Consensus 441 kn~~s-------~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~ 513 (819)
...+. .+......+....+++||||+......++...+.+-.+..+... +
T Consensus 140 ~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~------~----------------- 196 (591)
T TIGR01389 140 SQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFITS------F----------------- 196 (591)
T ss_pred ccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC------C-----------------
Confidence 54221 22233333445558999999854444444443332222111000 0
Q ss_pred hHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCc
Q 003450 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (819)
Q Consensus 514 ~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~ 593 (819)
.-|.....++
T Consensus 197 -------------~r~nl~~~v~--------------------------------------------------------- 206 (591)
T TIGR01389 197 -------------DRPNLRFSVV--------------------------------------------------------- 206 (591)
T ss_pred -------------CCCCcEEEEE---------------------------------------------------------
Confidence 0000000000
Q ss_pred cCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCC
Q 003450 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (819)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~ 673 (819)
....+...+.+++... .+.++||||+.....+.+.+.|...|+++..+||+++.++|..+++.|..+
T Consensus 207 -----------~~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g 273 (591)
T TIGR01389 207 -----------KKNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYD 273 (591)
T ss_pred -----------eCCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 0112233334444332 267899999999999999999999999999999999999999999999775
Q ss_pred CCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEE
Q 003450 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (819)
Q Consensus 674 ~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 728 (819)
. +.+|++|.+.|+|||+++++.||+|++|.|...|.|++||++|.|+...+.
T Consensus 274 ~---~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 274 D---VKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred C---CcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 4 348999999999999999999999999999999999999999999776554
No 42
>PTZ00424 helicase 45; Provisional
Probab=99.94 E-value=1e-24 Score=243.43 Aligned_cols=315 Identities=18% Similarity=0.274 Sum_probs=208.7
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--CCCceEEEecC-cchHHHHHHHHHHcC--CC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWAP--QM 359 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~--~~~~~LIv~P~-~ll~qW~~e~~~~~p--~~ 359 (819)
.+.|+|..++..+ ..+.+.|+.++||+|||+.++..+...... ....+||++|. .|+.|+.+.+..+.. ..
T Consensus 50 ~~~~~Q~~ai~~i----~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 125 (401)
T PTZ00424 50 KPSAIQQRGIKPI----LDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKV 125 (401)
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCc
Confidence 6899999999877 678899999999999999876555554432 23479999996 677888887777763 34
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--ccccCCccceEEEeccc
Q 003450 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEG 437 (819)
Q Consensus 360 ~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~lIvDEa 437 (819)
.+....|....+...... ....+|+|+|++.+... ...+..-++++||+|||
T Consensus 126 ~~~~~~g~~~~~~~~~~~--------------------------~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEa 179 (401)
T PTZ00424 126 RCHACVGGTVVRDDINKL--------------------------KAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEA 179 (401)
T ss_pred eEEEEECCcCHHHHHHHH--------------------------cCCCCEEEECcHHHHHHHHhCCcccccccEEEEecH
Confidence 555566665443332221 12468999999987532 22233346789999999
Q ss_pred ccccCcc--cHHHHHHHhccc-CcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhh
Q 003450 438 HRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (819)
Q Consensus 438 H~~kn~~--s~~~~~l~~l~~-~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~ 514 (819)
|++.... ......+..+.. ...+++|||+-. ...++. ..|.. .+
T Consensus 180 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~~------------------~~~~~--------------~~ 226 (401)
T PTZ00424 180 DEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPN-EILELT------------------TKFMR--------------DP 226 (401)
T ss_pred HHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCH-HHHHHH------------------HHHcC--------------CC
Confidence 9985432 344455555543 467999999621 111000 00000 00
Q ss_pred HHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCcc
Q 003450 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (819)
Q Consensus 515 ~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~ 594 (819)
..+ ..+.+ ...+.......+.+. .
T Consensus 227 ~~~-~~~~~-~~~~~~~~~~~~~~~--~---------------------------------------------------- 250 (401)
T PTZ00424 227 KRI-LVKKD-ELTLEGIRQFYVAVE--K---------------------------------------------------- 250 (401)
T ss_pred EEE-EeCCC-CcccCCceEEEEecC--h----------------------------------------------------
Confidence 000 00000 000000000000000 0
Q ss_pred CcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCC
Q 003450 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (819)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~ 674 (819)
...+...+..++... ...++||||+....++.+.+.|...|+.+..++|+++..+|+.+++.|+++.
T Consensus 251 -----------~~~~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~ 317 (401)
T PTZ00424 251 -----------EEWKFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGS 317 (401)
T ss_pred -----------HHHHHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 001222333333321 3568999999999999999999999999999999999999999999998754
Q ss_pred CCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCC
Q 003450 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (819)
Q Consensus 675 ~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~ 736 (819)
. .+|++|+++++|||++.+++||+||++.++..+.|++||++|.|... .++.|++.+
T Consensus 318 ~---~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G--~~i~l~~~~ 374 (401)
T PTZ00424 318 T---RVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKG--VAINFVTPD 374 (401)
T ss_pred C---CEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCc--eEEEEEcHH
Confidence 3 48999999999999999999999999999999999999999998654 345566554
No 43
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.93 E-value=1.3e-24 Score=252.73 Aligned_cols=311 Identities=16% Similarity=0.145 Sum_probs=208.0
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEE
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~ 362 (819)
..+||+|.+++..+ ..|+++|+.++||+|||+.....+.. ..+.+|||+|. +|+.++...+... ++.+.
T Consensus 459 ~sFRp~Q~eaI~ai----L~GrDVLVimPTGSGKSLcYQLPAL~----~~GiTLVISPLiSLmqDQV~~L~~~--GI~Aa 528 (1195)
T PLN03137 459 HSFRPNQREIINAT----MSGYDVFVLMPTGGGKSLTYQLPALI----CPGITLVISPLVSLIQDQIMNLLQA--NIPAA 528 (1195)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCccHHHHHHHHHHH----cCCcEEEEeCHHHHHHHHHHHHHhC--CCeEE
Confidence 47999999999876 67899999999999999886554432 13579999996 7776566665543 56777
Q ss_pred EEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc---ccccC----CccceEEEec
Q 003450 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---SASLK----PIKWQCMIVD 435 (819)
Q Consensus 363 ~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~---~~~l~----~~~~~~lIvD 435 (819)
.+.|+.........+.- .......++++++|++.+... ...+. .....+||||
T Consensus 529 ~L~s~~s~~eq~~ilr~--------------------l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVID 588 (1195)
T PLN03137 529 SLSAGMEWAEQLEILQE--------------------LSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVID 588 (1195)
T ss_pred EEECCCCHHHHHHHHHH--------------------HHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccC
Confidence 77776543322221100 000124678999999987532 11121 1236789999
Q ss_pred ccccccCccc---HHHHH----HHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHH
Q 003450 436 EGHRLKNKDS---KLFSS----LKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (819)
Q Consensus 436 EaH~~kn~~s---~~~~~----l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l 508 (819)
|||.+-..+. .-+.. ...+....+++||||.......++...+.+.++..+.. .|
T Consensus 589 EAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~------Sf------------ 650 (1195)
T PLN03137 589 EAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ------SF------------ 650 (1195)
T ss_pred cchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec------cc------------
Confidence 9999854321 11222 22344556799999985555445544443322211100 00
Q ss_pred HHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCC
Q 003450 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (819)
Q Consensus 509 ~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~ 588 (819)
.-|.....++ +-. .
T Consensus 651 ------------------~RpNL~y~Vv--~k~---k------------------------------------------- 664 (1195)
T PLN03137 651 ------------------NRPNLWYSVV--PKT---K------------------------------------------- 664 (1195)
T ss_pred ------------------CccceEEEEe--ccc---h-------------------------------------------
Confidence 0011111111 000 0
Q ss_pred CCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHH
Q 003450 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (819)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~ 668 (819)
..+..+.+++... ..+.+.||||..+...+.|...|...|+++..++|+++.++|..+++
T Consensus 665 -------------------k~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe 724 (1195)
T PLN03137 665 -------------------KCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQK 724 (1195)
T ss_pred -------------------hHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHH
Confidence 0011122222111 12457899999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEE
Q 003450 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 731 (819)
Q Consensus 669 ~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~ 731 (819)
+|..+.. .+||+|.+.|+|||+++++.||+|+.|.+...|.|++||++|.|+...+..|+
T Consensus 725 ~F~~Gei---~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 725 QWSKDEI---NIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred HHhcCCC---cEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 9987554 38999999999999999999999999999999999999999999987765543
No 44
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.93 E-value=1.1e-23 Score=245.14 Aligned_cols=307 Identities=16% Similarity=0.247 Sum_probs=203.1
Q ss_pred CCCchhHHHHHHHHHHhhcCC--CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcC--C
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--Q 358 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~--~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p--~ 358 (819)
.+|.++|.+++..+....... .+.+|.++||+|||+.++..+......+ ..++|++|+ .|..|+.+++.++++ +
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g-~qvlilaPT~~LA~Q~~~~~~~l~~~~g 312 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG-YQVALMAPTEILAEQHYNSLRNLLAPLG 312 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcC-CcEEEECCHHHHHHHHHHHHHHHhcccC
Confidence 579999999999886654333 4689999999999998876655544433 489999996 677899999999986 5
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH 438 (819)
+++.+++|+..........+ ......++|+|+|+..+.... .-.+.++|||||+|
T Consensus 313 i~v~lltg~~~~~~r~~~~~----------------------~i~~g~~~IiVgT~~ll~~~~---~~~~l~lvVIDEaH 367 (630)
T TIGR00643 313 IEVALLTGSLKGKRRKELLE----------------------TIASGQIHLVVGTHALIQEKV---EFKRLALVIIDEQH 367 (630)
T ss_pred cEEEEEecCCCHHHHHHHHH----------------------HHhCCCCCEEEecHHHHhccc---cccccceEEEechh
Confidence 88899999765443211111 011246799999999886432 22356799999999
Q ss_pred cccCcccHHHHHHHhc-c---cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhh
Q 003450 439 RLKNKDSKLFSSLKQY-S---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (819)
Q Consensus 439 ~~kn~~s~~~~~l~~l-~---~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~ 514 (819)
++.- .....+... . ..+.++|||||+...+. +.. |++.
T Consensus 368 ~fg~---~qr~~l~~~~~~~~~~~~l~~SATp~prtl~----l~~----------------~~~l--------------- 409 (630)
T TIGR00643 368 RFGV---EQRKKLREKGQGGFTPHVLVMSATPIPRTLA----LTV----------------YGDL--------------- 409 (630)
T ss_pred hccH---HHHHHHHHhcccCCCCCEEEEeCCCCcHHHH----HHh----------------cCCc---------------
Confidence 9732 222233322 2 56789999999653211 000 0000
Q ss_pred HHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCcc
Q 003450 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (819)
Q Consensus 515 ~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~ 594 (819)
...+...+|+....+...-+..
T Consensus 410 ------~~~~i~~~p~~r~~i~~~~~~~---------------------------------------------------- 431 (630)
T TIGR00643 410 ------DTSIIDELPPGRKPITTVLIKH---------------------------------------------------- 431 (630)
T ss_pred ------ceeeeccCCCCCCceEEEEeCc----------------------------------------------------
Confidence 0001112222111000000000
Q ss_pred CcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecch--------hHHHHHHHHHhh--CCCeEEEEeccCChHHHH
Q 003450 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQ--------HMLDLLEDYLTF--KKWQYERIDGKVGGAERQ 664 (819)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~--------~~ld~L~~~L~~--~g~~~~~l~G~~~~~~R~ 664 (819)
+ +...+.+.+......|++++|||... ..+..+.+.|.. .++++..++|+++.++|.
T Consensus 432 ------------~-~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~ 498 (630)
T TIGR00643 432 ------------D-EKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKE 498 (630)
T ss_pred ------------c-hHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHH
Confidence 0 00112222333334588899998754 233444455543 478999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCC-CcchHHHHhHhhhhcCCCCcEE
Q 003450 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKVM 728 (819)
Q Consensus 665 ~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~w-np~~~~Qa~gR~~R~Gq~~~V~ 728 (819)
+++++|.++... +||+|.+.++|||++++++||+++++. +...+.|+.||++|.|....+.
T Consensus 499 ~i~~~F~~g~~~---ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 499 AVMEEFREGEVD---ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCL 560 (630)
T ss_pred HHHHHHHcCCCC---EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEE
Confidence 999999875543 899999999999999999999999974 6788999999999998765554
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.93 E-value=1.2e-23 Score=248.92 Aligned_cols=308 Identities=17% Similarity=0.201 Sum_probs=206.4
Q ss_pred CCCchhHHHHHHHHHHhhcCC--CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCC--
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ-- 358 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~--~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~-- 358 (819)
.++.|.|..++..+......+ .+.+++++||+|||.+++..+......+ ..++|++|+ .|..|..+.|.+++++
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g-~qvlvLvPT~~LA~Q~~~~f~~~~~~~~ 528 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG-KQVAVLVPTTLLAQQHFETFKERFANFP 528 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC-CeEEEEeCcHHHHHHHHHHHHHHhccCC
Confidence 568999999999887655443 5789999999999998876555443333 589999997 6668889999987754
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH 438 (819)
+++..++|...........+ .....+.+|||+|+..+.... .+ .+..+|||||+|
T Consensus 529 i~v~~Lsg~~~~~e~~~~~~----------------------~l~~g~~dIVIGTp~ll~~~v-~f--~~L~llVIDEah 583 (926)
T TIGR00580 529 VTIELLSRFRSAKEQNEILK----------------------ELASGKIDILIGTHKLLQKDV-KF--KDLGLLIIDEEQ 583 (926)
T ss_pred cEEEEEeccccHHHHHHHHH----------------------HHHcCCceEEEchHHHhhCCC-Cc--ccCCEEEeeccc
Confidence 45666766543322111110 001246789999997764322 22 356799999999
Q ss_pred cccCcccHHHHHHHhcc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHHH
Q 003450 439 RLKNKDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (819)
Q Consensus 439 ~~kn~~s~~~~~l~~l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~l 517 (819)
++. ......+..+. ...+++|||||+...+.. .+....++.
T Consensus 584 rfg---v~~~~~L~~~~~~~~vL~~SATpiprtl~~--~l~g~~d~s--------------------------------- 625 (926)
T TIGR00580 584 RFG---VKQKEKLKELRTSVDVLTLSATPIPRTLHM--SMSGIRDLS--------------------------------- 625 (926)
T ss_pred ccc---hhHHHHHHhcCCCCCEEEEecCCCHHHHHH--HHhcCCCcE---------------------------------
Confidence 983 33445555554 457899999996432211 000000000
Q ss_pred HHhhhhhhhcCCCceEEEE---EecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCcc
Q 003450 518 RRVKKDVMKELPPKKELIL---RVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (819)
Q Consensus 518 rr~k~dv~~~lp~~~~~~v---~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~ 594 (819)
+. ..|+.....+ ..+.+.
T Consensus 626 ------~I-~~~p~~R~~V~t~v~~~~~---------------------------------------------------- 646 (926)
T TIGR00580 626 ------II-ATPPEDRLPVRTFVMEYDP---------------------------------------------------- 646 (926)
T ss_pred ------EE-ecCCCCccceEEEEEecCH----------------------------------------------------
Confidence 00 1111110000 011110
Q ss_pred CcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhC--CCeEEEEeccCChHHHHHHHHHhcC
Q 003450 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNA 672 (819)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~--g~~~~~l~G~~~~~~R~~~i~~F~~ 672 (819)
......++.. ...|.+++||++.....+.+.+.|... ++++..+||.++..+|.+++.+|.+
T Consensus 647 ---------------~~i~~~i~~e-l~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~ 710 (926)
T TIGR00580 647 ---------------ELVREAIRRE-LLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK 710 (926)
T ss_pred ---------------HHHHHHHHHH-HHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc
Confidence 0000011122 234789999999999999999999864 7899999999999999999999987
Q ss_pred CCCCcEEEEeccccccccCCcccCCEEEEeCCC-CCcchHHHHhHhhhhcCCCCcEEEEEEEeC
Q 003450 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (819)
Q Consensus 673 ~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~-wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~ 735 (819)
+... +||+|.+.++|||++.+++||+++.+ +....+.|++||++|.|... .+|-++..
T Consensus 711 Gk~~---ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g--~aill~~~ 769 (926)
T TIGR00580 711 GEFQ---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKA--YAYLLYPH 769 (926)
T ss_pred CCCC---EEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCe--EEEEEECC
Confidence 6544 89999999999999999999999985 46678899999999987644 44555543
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.92 E-value=2e-23 Score=244.37 Aligned_cols=305 Identities=15% Similarity=0.214 Sum_probs=203.6
Q ss_pred CCCchhHHHHHHHHHHhhcCC--CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCC--
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ-- 358 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~--~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~-- 358 (819)
.+|+++|..++.-+...+..+ .+.+|.++||+|||+.++..+......+ ..+||++|+ .|..|..+.+.++++.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g-~q~lilaPT~~LA~Q~~~~l~~l~~~~~ 338 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAG-YQAALMAPTEILAEQHYENLKKLLEPLG 338 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 579999999999886655433 4789999999999999876665544432 489999997 7778999999998864
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH 438 (819)
+++..++|+........... .......+|+|+|+..+.... .+ .+.++||+||+|
T Consensus 339 i~v~ll~G~~~~~~r~~~~~----------------------~l~~g~~~IvVgT~~ll~~~v-~~--~~l~lvVIDE~H 393 (681)
T PRK10917 339 IRVALLTGSLKGKERREILE----------------------AIASGEADIVIGTHALIQDDV-EF--HNLGLVIIDEQH 393 (681)
T ss_pred cEEEEEcCCCCHHHHHHHHH----------------------HHhCCCCCEEEchHHHhcccc-hh--cccceEEEechh
Confidence 78888999866433222111 011246899999999885422 12 356799999999
Q ss_pred cccCcccHHHHHHHhc-ccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHHH
Q 003450 439 RLKNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (819)
Q Consensus 439 ~~kn~~s~~~~~l~~l-~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~l 517 (819)
++. ......+... ...+.++|||||+...+. +.. |.+.
T Consensus 394 rfg---~~qr~~l~~~~~~~~iL~~SATp~prtl~----~~~----------------~g~~------------------ 432 (681)
T PRK10917 394 RFG---VEQRLALREKGENPHVLVMTATPIPRTLA----MTA----------------YGDL------------------ 432 (681)
T ss_pred hhh---HHHHHHHHhcCCCCCEEEEeCCCCHHHHH----HHH----------------cCCC------------------
Confidence 983 3333444443 346889999999632210 000 0000
Q ss_pred HHhhhhhhhcCCCceE--EEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccC
Q 003450 518 RRVKKDVMKELPPKKE--LILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (819)
Q Consensus 518 rr~k~dv~~~lp~~~~--~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~ 595 (819)
.-.+...+|+... ....+
T Consensus 433 ---~~s~i~~~p~~r~~i~~~~~--------------------------------------------------------- 452 (681)
T PRK10917 433 ---DVSVIDELPPGRKPITTVVI--------------------------------------------------------- 452 (681)
T ss_pred ---ceEEEecCCCCCCCcEEEEe---------------------------------------------------------
Confidence 0000011222110 00000
Q ss_pred cHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchh--------HHHHHHHHHhhC--CCeEEEEeccCChHHHHH
Q 003450 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQH--------MLDLLEDYLTFK--KWQYERIDGKVGGAERQI 665 (819)
Q Consensus 596 ~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~--------~ld~L~~~L~~~--g~~~~~l~G~~~~~~R~~ 665 (819)
...+...+.+.+......|++++|||..+. .+..+.+.|... ++++..++|+++..+|++
T Consensus 453 ----------~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~ 522 (681)
T PRK10917 453 ----------PDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDA 522 (681)
T ss_pred ----------CcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHH
Confidence 011112222333333467899999997532 234455555543 578999999999999999
Q ss_pred HHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCC-CcchHHHHhHhhhhcCCCCcEE
Q 003450 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKVM 728 (819)
Q Consensus 666 ~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~w-np~~~~Qa~gR~~R~Gq~~~V~ 728 (819)
++++|.++.. .+|++|.+.++|||++++++||+++++. ....+.|++||++|.|....+.
T Consensus 523 i~~~F~~g~~---~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 583 (681)
T PRK10917 523 VMAAFKAGEI---DILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCV 583 (681)
T ss_pred HHHHHHcCCC---CEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEE
Confidence 9999987544 3899999999999999999999999974 5688899999999998765443
No 47
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=1.3e-24 Score=225.11 Aligned_cols=339 Identities=17% Similarity=0.326 Sum_probs=237.2
Q ss_pred CCCCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcC--
Q 003450 281 LSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-- 357 (819)
Q Consensus 281 ~~~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p-- 357 (819)
.+..++||||...+..| +.-...+.+|+.-++|.|||+..+.++..+ .+.+||+|.+ .-+.||+.+|..|..
T Consensus 298 KPst~iRpYQEksL~KM-FGNgRARSGiIVLPCGAGKtLVGvTAa~ti----kK~clvLcts~VSVeQWkqQfk~wsti~ 372 (776)
T KOG1123|consen 298 KPSTQIRPYQEKSLSKM-FGNGRARSGIIVLPCGAGKTLVGVTAACTI----KKSCLVLCTSAVSVEQWKQQFKQWSTIQ 372 (776)
T ss_pred CcccccCchHHHHHHHH-hCCCcccCceEEEecCCCCceeeeeeeeee----cccEEEEecCccCHHHHHHHHHhhcccC
Confidence 34468999999999877 222233578999999999999887766544 2478999996 567999999999983
Q ss_pred CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhh----------cccccCCc
Q 003450 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----------DSASLKPI 427 (819)
Q Consensus 358 ~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~----------~~~~l~~~ 427 (819)
+-.+..|+...+++ ......|+|+||.++.. -.+++...
T Consensus 373 d~~i~rFTsd~Ke~-------------------------------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~ 421 (776)
T KOG1123|consen 373 DDQICRFTSDAKER-------------------------------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGR 421 (776)
T ss_pred ccceEEeecccccc-------------------------------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcC
Confidence 34556666554443 12456799999999853 24567788
Q ss_pred cceEEEecccccccCcccHHHHHHHh-cccCcEEEEeCCCCCCChhHHHhhhcc-cCCCCCC-ChHHHHHHHhccchHHH
Q 003450 428 KWQCMIVDEGHRLKNKDSKLFSSLKQ-YSTRHRVLLTGTPLQNNLDELFMLMHF-LDAGKFG-SLEEFQEEFKDINQEEQ 504 (819)
Q Consensus 428 ~~~~lIvDEaH~~kn~~s~~~~~l~~-l~~~~~llLTgTP~~n~~~el~~ll~~-l~~~~~~-~~~~f~~~~~~~~~~~~ 504 (819)
.|.++|+||+|-+ ..++++.+.. +.+..+|+||||-+..+ |-..=|+| +.|..+. ++-+...
T Consensus 422 EWGllllDEVHvv---PA~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYEAnWmdL~~---------- 486 (776)
T KOG1123|consen 422 EWGLLLLDEVHVV---PAKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEANWMDLQK---------- 486 (776)
T ss_pred eeeeEEeehhccc---hHHHHHHHHHHHHHHhhccceeEEeecc--ccccccceeecchhhhccHHHHHh----------
Confidence 9999999999988 5566655554 47788999999987654 11122233 3455442 1111100
Q ss_pred HHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCc
Q 003450 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY 584 (819)
Q Consensus 505 ~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~ 584 (819)
...+....-.-|+|+||++ +|++.+..+... |..
T Consensus 487 --------------------kGhIA~VqCaEVWCpMt~e---Fy~eYL~~~t~k------------------r~l----- 520 (776)
T KOG1123|consen 487 --------------------KGHIAKVQCAEVWCPMTPE---FYREYLRENTRK------------------RML----- 520 (776)
T ss_pred --------------------CCceeEEeeeeeecCCCHH---HHHHHHhhhhhh------------------hhe-----
Confidence 0123344556789999985 555544432110 000
Q ss_pred ccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHH
Q 003450 585 MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ 664 (819)
Q Consensus 585 l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~ 664 (819)
..+-...|++...=|+.....+|.|+|||+...-.| ..|-...|-+ .+.|.+++.+|-
T Consensus 521 -----------------LyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfAL---k~YAikl~Kp--fIYG~Tsq~ERm 578 (776)
T KOG1123|consen 521 -----------------LYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFAL---KEYAIKLGKP--FIYGPTSQNERM 578 (776)
T ss_pred -----------------eeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHH---HHHHHHcCCc--eEECCCchhHHH
Confidence 001145688888888888888999999999886654 4444445555 467999999999
Q ss_pred HHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCC-CcchHHHHhHhhhhcCCC----CcEEEEEEEeCCCHH
Q 003450 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQT----NKVMIFRLITRGSIE 739 (819)
Q Consensus 665 ~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~w-np~~~~Qa~gR~~R~Gq~----~~V~v~~li~~~TvE 739 (819)
++++.|+..+.-. -+.-+++|...|||+.|+.+|-..+.. +-.+..||.||+.|.-.. -++..|-|++.+|.|
T Consensus 579 ~ILqnFq~n~~vN--TIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqE 656 (776)
T KOG1123|consen 579 KILQNFQTNPKVN--TIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQE 656 (776)
T ss_pred HHHHhcccCCccc--eEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHH
Confidence 9999998654332 344579999999999999999998865 556788999999996432 247899999999976
Q ss_pred H
Q 003450 740 E 740 (819)
Q Consensus 740 e 740 (819)
.
T Consensus 657 M 657 (776)
T KOG1123|consen 657 M 657 (776)
T ss_pred H
Confidence 4
No 48
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.92 E-value=2.4e-23 Score=244.55 Aligned_cols=330 Identities=17% Similarity=0.171 Sum_probs=213.4
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHH-HHHHhcCCCCceEEEecC-cchHHHHHHHHHHc-CCCeE
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGERISPHLVVAPL-STLRNWEREFATWA-PQMNV 361 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~-l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~-p~~~v 361 (819)
+|+++|.+++..+ ..|+++++..+||+|||+.++.. +..+.......+||++|+ .|..|..+++..+. .++++
T Consensus 36 ~p~~~Q~~ai~~i----l~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v 111 (742)
T TIGR03817 36 RPWQHQARAAELA----HAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRP 111 (742)
T ss_pred cCCHHHHHHHHHH----HCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEE
Confidence 6999999999876 67899999999999999986554 444444333489999996 77788888888876 36788
Q ss_pred EEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhccc--------ccCCccceEEE
Q 003450 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--------SLKPIKWQCMI 433 (819)
Q Consensus 362 ~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--------~l~~~~~~~lI 433 (819)
.++.|+...... ... ..+.+|+|+|++++....- .+. +.++||
T Consensus 112 ~~~~Gdt~~~~r-~~i--------------------------~~~~~IivtTPd~L~~~~L~~~~~~~~~l~--~l~~vV 162 (742)
T TIGR03817 112 ATYDGDTPTEER-RWA--------------------------REHARYVLTNPDMLHRGILPSHARWARFLR--RLRYVV 162 (742)
T ss_pred EEEeCCCCHHHH-HHH--------------------------hcCCCEEEEChHHHHHhhccchhHHHHHHh--cCCEEE
Confidence 889887654321 110 1246899999999863211 122 457999
Q ss_pred ecccccccCc-ccHHHHHHHhc--------ccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHH
Q 003450 434 VDEGHRLKNK-DSKLFSSLKQY--------STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ 504 (819)
Q Consensus 434 vDEaH~~kn~-~s~~~~~l~~l--------~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~ 504 (819)
|||||.+.+. .+.+...+..+ .....+++|||. +++.++... ++..
T Consensus 163 iDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi--~n~~~~~~~--l~g~--------------------- 217 (742)
T TIGR03817 163 IDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATT--ADPAAAASR--LIGA--------------------- 217 (742)
T ss_pred EeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCC--CCHHHHHHH--HcCC---------------------
Confidence 9999998652 33333333332 124578999995 222222110 0000
Q ss_pred HHHHHHHHhhHHHHHhhhhhhh-cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCC
Q 003450 505 ISRLHRMLAPHLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHP 583 (819)
Q Consensus 505 ~~~l~~~l~~~~lrr~k~dv~~-~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp 583 (819)
+. ..+.. .-|.............. . . . ..
T Consensus 218 ---------~~------~~i~~~~~~~~~~~~~~~~p~~~-----~-~--------~--~~------------------- 247 (742)
T TIGR03817 218 ---------PV------VAVTEDGSPRGARTVALWEPPLT-----E-L--------T--GE------------------- 247 (742)
T ss_pred ---------Ce------EEECCCCCCcCceEEEEecCCcc-----c-c--------c--cc-------------------
Confidence 00 00000 11111111111110000 0 0 0 00
Q ss_pred cccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhC--------CCeEEEEe
Q 003450 584 YMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--------KWQYERID 655 (819)
Q Consensus 584 ~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~--------g~~~~~l~ 655 (819)
....... .....+...+.. +...+.++|||++.+...+.|...|... +.++..++
T Consensus 248 ------~~~~~r~-------~~~~~~~~~l~~----l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~h 310 (742)
T TIGR03817 248 ------NGAPVRR-------SASAEAADLLAD----LVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYR 310 (742)
T ss_pred ------ccccccc-------chHHHHHHHHHH----HHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhhee
Confidence 0000000 001123333333 3345889999999999999999887643 56788999
Q ss_pred ccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeC
Q 003450 656 GKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (819)
Q Consensus 656 G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~ 735 (819)
|++++++|.++.++|.++. +.+|++|+++++|||++++++||+|+.|-+...+.||+||++|.|+... ++.++..
T Consensus 311 gg~~~~eR~~ie~~f~~G~---i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~ 385 (742)
T TIGR03817 311 AGYLPEDRRELERALRDGE---LLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARD 385 (742)
T ss_pred cCCCHHHHHHHHHHHHcCC---ceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCC
Confidence 9999999999999997643 4589999999999999999999999999999999999999999987653 3445555
Q ss_pred CCHHHHHHH
Q 003450 736 GSIEERMMQ 744 (819)
Q Consensus 736 ~TvEe~i~~ 744 (819)
+..|..++.
T Consensus 386 ~~~d~~~~~ 394 (742)
T TIGR03817 386 DPLDTYLVH 394 (742)
T ss_pred ChHHHHHHh
Confidence 666665544
No 49
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.7e-23 Score=236.77 Aligned_cols=329 Identities=19% Similarity=0.304 Sum_probs=229.2
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHH-HHHHHhc-CC-CCc-eEEEecC-cchHHHHHHHHHHcC-
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFG-ER-ISP-HLVVAPL-STLRNWEREFATWAP- 357 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~-~l~~l~~-~~-~~~-~LIv~P~-~ll~qW~~e~~~~~p- 357 (819)
..+.|.|..++..+ ..+++.+..+.||+|||...+. ++..+.. .. ..+ .||++|+ .|..|-.+++..+..
T Consensus 50 ~~pt~IQ~~~IP~~----l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~ 125 (513)
T COG0513 50 EEPTPIQLAAIPLI----LAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKN 125 (513)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhh
Confidence 36889999999876 6779999999999999988544 4444432 22 223 9999997 677788888887764
Q ss_pred --CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--ccccCCccceEEE
Q 003450 358 --QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMI 433 (819)
Q Consensus 358 --~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~lI 433 (819)
++++..++|+.........+. ...+|||.|+..+... ...+...+..++|
T Consensus 126 ~~~~~~~~i~GG~~~~~q~~~l~--------------------------~~~~ivVaTPGRllD~i~~~~l~l~~v~~lV 179 (513)
T COG0513 126 LGGLRVAVVYGGVSIRKQIEALK--------------------------RGVDIVVATPGRLLDLIKRGKLDLSGVETLV 179 (513)
T ss_pred cCCccEEEEECCCCHHHHHHHHh--------------------------cCCCEEEECccHHHHHHHcCCcchhhcCEEE
Confidence 677888888877666554431 1489999999998743 2345556778999
Q ss_pred ecccccccCcc--cHHHHHHHhccc-CcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHH
Q 003450 434 VDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (819)
Q Consensus 434 vDEaH~~kn~~--s~~~~~l~~l~~-~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~ 510 (819)
+|||.++-+.+ ..+...+..++. ...++.|||--. . +..+
T Consensus 180 lDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~-~----------------------------------i~~l-- 222 (513)
T COG0513 180 LDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPD-D----------------------------------IREL-- 222 (513)
T ss_pred eccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCH-H----------------------------------HHHH--
Confidence 99999997653 455566666654 566899999521 1 1111
Q ss_pred HHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCC
Q 003450 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (819)
Q Consensus 511 ~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~ 590 (819)
...++ . .|. .+.+..... .. .. . -..+.++.
T Consensus 223 -~~~~l----~-------~p~---~i~v~~~~~-~~------------------~~----------~-~i~q~~~~---- 253 (513)
T COG0513 223 -ARRYL----N-------DPV---EIEVSVEKL-ER------------------TL----------K-KIKQFYLE---- 253 (513)
T ss_pred -HHHHc----c-------CCc---EEEEccccc-cc------------------cc----------c-CceEEEEE----
Confidence 11100 0 000 111110000 00 00 0 00000000
Q ss_pred CCccCcHHHHHHhhhc-CchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHH
Q 003450 591 PDIEDTNESFKQLLES-SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (819)
Q Consensus 591 ~~~~~~~~~~~~l~~~-s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~ 669 (819)
+.. ..|+..|..++.... ..++|||+.....++.|...|...|+++..|+|++++++|.++++.
T Consensus 254 -------------v~~~~~k~~~L~~ll~~~~--~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~ 318 (513)
T COG0513 254 -------------VESEEEKLELLLKLLKDED--EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEK 318 (513)
T ss_pred -------------eCCHHHHHHHHHHHHhcCC--CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHH
Confidence 001 147888888887643 3379999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHh
Q 003450 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKK 749 (819)
Q Consensus 670 F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~~K 749 (819)
|+++... +||+|+++++|||++.+++||+||.|.++..|+||+||++|.|.+. ..+.|++. .-|...+..+++.
T Consensus 319 F~~g~~~---vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G--~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 319 FKDGELR---VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKG--VAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred HHcCCCC---EEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCC--eEEEEeCc-HHHHHHHHHHHHH
Confidence 9865444 8999999999999999999999999999999999999999999554 44556665 2255555554444
No 50
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.92 E-value=2.3e-23 Score=250.96 Aligned_cols=358 Identities=16% Similarity=0.199 Sum_probs=207.4
Q ss_pred CCCCchhHHHHHHHHHHhhcC-CCceEEEcCCCCcHHHHHHHHHHHHhcC-CCCceEEEec-CcchHHHHHHHHHHcCCC
Q 003450 283 GGSLHPYQLEGLNFLRFSWSK-QTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP-LSTLRNWEREFATWAPQM 359 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~-~~~~iLade~GlGKT~~~i~~l~~l~~~-~~~~~LIv~P-~~ll~qW~~e~~~~~p~~ 359 (819)
+..||+||.+|++.+...+.. .++++|.++||+|||+++++++..+... ..+++||+|| ..|+.||.++|..+.+..
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 357999999999888766654 4689999999999999999998887654 3469999999 588899999999875321
Q ss_pred e--EEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhccc-------ccCCccce
Q 003450 360 N--VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-------SLKPIKWQ 430 (819)
Q Consensus 360 ~--v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~-------~l~~~~~~ 430 (819)
. +....+..... . ........|+|+|++++..... .+..-.|+
T Consensus 491 ~~~~~~i~~i~~L~----~------------------------~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fd 542 (1123)
T PRK11448 491 DQTFASIYDIKGLE----D------------------------KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYD 542 (1123)
T ss_pred ccchhhhhchhhhh----h------------------------hcccCCCCEEEEEHHHHHHhhhccccccccCCCCccc
Confidence 1 10011111000 0 0011246799999999865321 12334789
Q ss_pred EEEecccccccCcc----------------cHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHH
Q 003450 431 CMIVDEGHRLKNKD----------------SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQE 494 (819)
Q Consensus 431 ~lIvDEaH~~kn~~----------------s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~ 494 (819)
+||+|||||..... ...++.+.......+|+|||||..+. .++|. .| .+
T Consensus 543 lIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFdA~~IGLTATP~r~t-~~~FG-----~p-v~-------- 607 (1123)
T PRK11448 543 CIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFDAVKIGLTATPALHT-TEIFG-----EP-VY-------- 607 (1123)
T ss_pred EEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcCccEEEEecCCccch-hHHhC-----Ce-eE--------
Confidence 99999999963100 12233333333468999999997432 12221 00 00
Q ss_pred HHhccchHHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEE----ecCC-HHHHHHHHHHHHHHHHHHHhcCCCcchH
Q 003450 495 EFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILR----VELS-SKQKEYYKAILTRNYQILTRRGGAQISL 569 (819)
Q Consensus 495 ~~~~~~~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~----~~ls-~~q~~~y~~i~~~~~~~l~~~~~~~~~~ 569 (819)
.. .+.+.+..-.+ ...-||....... +... ..+...|+..... +... .....+
T Consensus 608 ------~Y----sl~eAI~DG~L-------v~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~----i~~~-~l~d~~ 665 (1123)
T PRK11448 608 ------TY----SYREAVIDGYL-------IDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGE----IDLA-TLEDEV 665 (1123)
T ss_pred ------Ee----eHHHHHhcCCc-------ccCcCCEEEEEEeccccccccccchhhhcchhhhh----hhhc-cCcHHH
Confidence 00 01111111000 0001333322211 0111 1111122211100 0000 000000
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHH-HHHHHHHHHh-cCceEEEEecchhHHHHHHHHHhhC
Q 003450 570 INVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQL-LDKMMVKLKE-QGHRVLIYSQFQHMLDLLEDYLTFK 647 (819)
Q Consensus 570 ~~~~~~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~-l~~ll~~l~~-~g~kvlIFs~~~~~ld~L~~~L~~~ 647 (819)
.. ......+.++ ....... +..++..+.. .+.|+||||....+++.+.+.|...
T Consensus 666 ~~-----------------------~~~~~~~~vi-~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~ 721 (1123)
T PRK11448 666 DF-----------------------EVEDFNRRVI-TESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEA 721 (1123)
T ss_pred hh-----------------------hHHHHHHHHh-hHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 00 0000000111 1111122 2233333322 2369999999999988888776532
Q ss_pred ------CC---eEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhh
Q 003450 648 ------KW---QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARA 718 (819)
Q Consensus 648 ------g~---~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~ 718 (819)
++ .+..++|+++ ++++++++|.++..+ .++++++..++|+|++.+++||++++.-|+..+.|++||+
T Consensus 722 f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p--~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRg 797 (1123)
T PRK11448 722 FKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLP--NIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRA 797 (1123)
T ss_pred HHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCC--eEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhh
Confidence 22 4567899875 578899999875433 5799999999999999999999999999999999999999
Q ss_pred hhcCC---CCcEEEEEEE
Q 003450 719 HRLGQ---TNKVMIFRLI 733 (819)
Q Consensus 719 ~R~Gq---~~~V~v~~li 733 (819)
.|... +....||.++
T Consensus 798 tR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 798 TRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred ccCCccCCCceEEEEehH
Confidence 99865 3456788765
No 51
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.91 E-value=6.7e-23 Score=245.73 Aligned_cols=324 Identities=18% Similarity=0.201 Sum_probs=202.4
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHH-HHHHhcCC-------CCceEEEecC-cchHHHHHHHH-
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGER-------ISPHLVVAPL-STLRNWEREFA- 353 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~-l~~l~~~~-------~~~~LIv~P~-~ll~qW~~e~~- 353 (819)
..|+|+|.+++..+ ..++++|+..+||+|||..++.. +..+.... ...+|+|+|+ .|..|+.+.+.
T Consensus 31 ~~~tpiQ~~Ai~~i----l~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLI----HEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 35999999999866 67889999999999999987554 44443211 1258999996 66666655332
Q ss_pred ------HHc-------CCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc
Q 003450 354 ------TWA-------PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD 420 (819)
Q Consensus 354 ------~~~-------p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~ 420 (819)
.++ +++.+.+.+|+.......+.. ...++|+|||++++...
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l--------------------------~~~p~IlVtTPE~L~~l 160 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKML--------------------------KKPPHILITTPESLAIL 160 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHH--------------------------hCCCCEEEecHHHHHHH
Confidence 332 367888888886554322221 13578999999998532
Q ss_pred cc--ccC--CccceEEEecccccccCcc--cHHHHH---HHhcc--cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCCh
Q 003450 421 SA--SLK--PIKWQCMIVDEGHRLKNKD--SKLFSS---LKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSL 489 (819)
Q Consensus 421 ~~--~l~--~~~~~~lIvDEaH~~kn~~--s~~~~~---l~~l~--~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~ 489 (819)
.. .+. -.+.++|||||+|.+.+.. ..+... +..+. ...+++||||. .++.++...+ .......
T Consensus 161 l~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl--~~~~~va~~L---~~~~~~~- 234 (876)
T PRK13767 161 LNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATI--EPLEEVAKFL---VGYEDDG- 234 (876)
T ss_pred hcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc--CCHHHHHHHh---cCccccC-
Confidence 11 110 1245789999999996432 222222 22332 34679999996 2233322211 1100000
Q ss_pred HHHHHHHhccchHHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchH
Q 003450 490 EEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISL 569 (819)
Q Consensus 490 ~~f~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~ 569 (819)
.. .+. .-+...........+.++...
T Consensus 235 -----------~~----------r~~------~iv~~~~~k~~~i~v~~p~~~--------------------------- 260 (876)
T PRK13767 235 -----------EP----------RDC------EIVDARFVKPFDIKVISPVDD--------------------------- 260 (876)
T ss_pred -----------CC----------Cce------EEEccCCCccceEEEeccCcc---------------------------
Confidence 00 000 000000000000000000000
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhh---
Q 003450 570 INVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--- 646 (819)
Q Consensus 570 ~~~~~~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~--- 646 (819)
+.... .......+.+.+..+...++++||||+.+...+.+...|..
T Consensus 261 ---------------l~~~~----------------~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~ 309 (876)
T PRK13767 261 ---------------LIHTP----------------AEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFP 309 (876)
T ss_pred ---------------ccccc----------------cchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhch
Confidence 00000 00011223344445555688999999999999999888875
Q ss_pred ---CCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhc-C
Q 003450 647 ---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL-G 722 (819)
Q Consensus 647 ---~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~-G 722 (819)
.+..+..++|+++.++|..+.+.|+++.. .+|++|.++++|||++.+++||++++|.+...++||+||++|. |
T Consensus 310 ~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i---~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g 386 (876)
T PRK13767 310 EEYDEDNIGAHHSSLSREVRLEVEEKLKRGEL---KVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLG 386 (876)
T ss_pred hhccccceeeeeCCCCHHHHHHHHHHHHcCCC---eEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCC
Confidence 25678999999999999999999987543 4899999999999999999999999999999999999999986 4
Q ss_pred CCCcEEEEE
Q 003450 723 QTNKVMIFR 731 (819)
Q Consensus 723 q~~~V~v~~ 731 (819)
+...-.++-
T Consensus 387 ~~~~g~ii~ 395 (876)
T PRK13767 387 EVSKGRIIV 395 (876)
T ss_pred CCCcEEEEE
Confidence 444555544
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.91 E-value=1.4e-22 Score=245.20 Aligned_cols=302 Identities=18% Similarity=0.206 Sum_probs=201.8
Q ss_pred CCCchhHHHHHHHHHHhhcC--CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCC--
Q 003450 284 GSLHPYQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ-- 358 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~--~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~-- 358 (819)
.++.+.|.+++.-+...... ..+.+++++||+|||.+++.++..... ....+||+||+ .|..|..+.|.+++..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~ 677 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-NHKQVAVLVPTTLLAQQHYDNFRDRFANWP 677 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-cCCeEEEEeCcHHHHHHHHHHHHHhhccCC
Confidence 46899999999987665443 367999999999999987644433333 23589999997 5667888888876643
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH 438 (819)
+++.+++|...........+ .......+|+|+|++.+.... .-.++++|||||+|
T Consensus 678 v~i~~l~g~~s~~e~~~il~----------------------~l~~g~~dIVVgTp~lL~~~v---~~~~L~lLVIDEah 732 (1147)
T PRK10689 678 VRIEMLSRFRSAKEQTQILA----------------------EAAEGKIDILIGTHKLLQSDV---KWKDLGLLIVDEEH 732 (1147)
T ss_pred ceEEEEECCCCHHHHHHHHH----------------------HHHhCCCCEEEECHHHHhCCC---CHhhCCEEEEechh
Confidence 56666666543332221110 001246789999998775332 22367899999999
Q ss_pred cccCcccHHHHHHHhcc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHHH
Q 003450 439 RLKNKDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (819)
Q Consensus 439 ~~kn~~s~~~~~l~~l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~l 517 (819)
++.. .....+..+. ...++++||||++..+.-. +..+.++..
T Consensus 733 rfG~---~~~e~lk~l~~~~qvLl~SATpiprtl~l~--~~gl~d~~~-------------------------------- 775 (1147)
T PRK10689 733 RFGV---RHKERIKAMRADVDILTLTATPIPRTLNMA--MSGMRDLSI-------------------------------- 775 (1147)
T ss_pred hcch---hHHHHHHhcCCCCcEEEEcCCCCHHHHHHH--HhhCCCcEE--------------------------------
Confidence 9832 2334455554 4578999999964332100 000000000
Q ss_pred HHhhhhhhhcCCCceEE---EEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCcc
Q 003450 518 RRVKKDVMKELPPKKEL---ILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (819)
Q Consensus 518 rr~k~dv~~~lp~~~~~---~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~ 594 (819)
. ..|+.... .+......
T Consensus 776 -------I-~~~p~~r~~v~~~~~~~~~---------------------------------------------------- 795 (1147)
T PRK10689 776 -------I-ATPPARRLAVKTFVREYDS---------------------------------------------------- 795 (1147)
T ss_pred -------E-ecCCCCCCCceEEEEecCc----------------------------------------------------
Confidence 0 01111000 00000000
Q ss_pred CcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhC--CCeEEEEeccCChHHHHHHHHHhcC
Q 003450 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNA 672 (819)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~--g~~~~~l~G~~~~~~R~~~i~~F~~ 672 (819)
......++..+. +|.+++||++.+..++.+.+.|... ++++..++|.++..+|.+++.+|.+
T Consensus 796 ---------------~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~ 859 (1147)
T PRK10689 796 ---------------LVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 859 (1147)
T ss_pred ---------------HHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh
Confidence 001112233333 3678999999999999999999876 7899999999999999999999987
Q ss_pred CCCCcEEEEeccccccccCCcccCCEEEEeCCC-CCcchHHHHhHhhhhcCCCCcE
Q 003450 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKV 727 (819)
Q Consensus 673 ~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~-wnp~~~~Qa~gR~~R~Gq~~~V 727 (819)
+..+ +||+|.+.++|||++.+++||+.+++ ++...+.|++||++|.|....+
T Consensus 860 Gk~~---VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a 912 (1147)
T PRK10689 860 QRFN---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA 912 (1147)
T ss_pred cCCC---EEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEE
Confidence 6544 89999999999999999999988775 6778899999999999876533
No 53
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.9e-23 Score=200.92 Aligned_cols=315 Identities=18% Similarity=0.258 Sum_probs=227.0
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHH-HHHHHHHHhcCC-CCceEEEecC-cchHHHHHHHHHHcC--CC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGER-ISPHLVVAPL-STLRNWEREFATWAP--QM 359 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~-~i~~l~~l~~~~-~~~~LIv~P~-~ll~qW~~e~~~~~p--~~ 359 (819)
++...|..|+..+ .+|+++|.....|+|||.+ +++++..+.-.. .-.+||+.|+ .+..|-..-+...+. +.
T Consensus 49 kPS~IQqrAi~~I----lkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnv 124 (400)
T KOG0328|consen 49 KPSAIQQRAIPQI----LKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNV 124 (400)
T ss_pred CchHHHhhhhhhh----hcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccc
Confidence 3455788888766 7899999999999999977 566665543222 2389999997 566677777776664 56
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhh--cccccCCccceEEEeccc
Q 003450 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL--DSASLKPIKWQCMIVDEG 437 (819)
Q Consensus 360 ~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~--~~~~l~~~~~~~lIvDEa 437 (819)
.+..+.|++.....++..+ ...+||..|++.+.. ....|+.....++|+|||
T Consensus 125 q~hacigg~n~gedikkld--------------------------~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEa 178 (400)
T KOG0328|consen 125 QCHACIGGKNLGEDIKKLD--------------------------YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEA 178 (400)
T ss_pred eEEEEecCCccchhhhhhc--------------------------ccceEeeCCCchHHHHHHhccccccceeEEEeccH
Confidence 6677778777666555542 467899999998754 344566667889999999
Q ss_pred ccccC--cccHHHHHHHhcc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhh
Q 003450 438 HRLKN--KDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (819)
Q Consensus 438 H~~kn--~~s~~~~~l~~l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~ 514 (819)
+.+.| ...+.+.....++ ....+++|||- +.|+..+.++..+++
T Consensus 179 DemL~kgfk~Qiydiyr~lp~~~Qvv~~SATl----p~eilemt~kfmtdp----------------------------- 225 (400)
T KOG0328|consen 179 DEMLNKGFKEQIYDIYRYLPPGAQVVLVSATL----PHEILEMTEKFMTDP----------------------------- 225 (400)
T ss_pred HHHHHhhHHHHHHHHHHhCCCCceEEEEeccC----cHHHHHHHHHhcCCc-----------------------------
Confidence 99855 4567888888886 56789999994 122222211111111
Q ss_pred HHHHHhhhhhhhcCCCceEEEEEecCCHH-HHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCc
Q 003450 515 HLLRRVKKDVMKELPPKKELILRVELSSK-QKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (819)
Q Consensus 515 ~~lrr~k~dv~~~lp~~~~~~v~~~ls~~-q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~ 593 (819)
....+-.-+++.+ -+++|-+. +
T Consensus 226 ----------------vrilvkrdeltlEgIKqf~v~v--------------------------------------e--- 248 (400)
T KOG0328|consen 226 ----------------VRILVKRDELTLEGIKQFFVAV--------------------------------------E--- 248 (400)
T ss_pred ----------------eeEEEecCCCchhhhhhheeee--------------------------------------c---
Confidence 1111111222222 11111100 0
Q ss_pred cCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCC
Q 003450 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (819)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~ 673 (819)
...-|+..|..+...+- -.+.+|||+.....|+|.+.++..++.+..++|.+++++|.+++..|+.+
T Consensus 249 -----------~EewKfdtLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg 315 (400)
T KOG0328|consen 249 -----------KEEWKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSG 315 (400)
T ss_pred -----------hhhhhHhHHHHHhhhhe--hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcC
Confidence 01226667777776654 34899999999999999999999999999999999999999999999987
Q ss_pred CCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCC
Q 003450 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (819)
Q Consensus 674 ~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~T 737 (819)
.+. +|++|++-++|||+|.++.||+||.|-|+..|++|+||.+|.|.+. .+..|+..+.
T Consensus 316 ~Sr---vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkG--vainFVk~~d 374 (400)
T KOG0328|consen 316 KSR---VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKSDD 374 (400)
T ss_pred Cce---EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcc--eEEEEecHHH
Confidence 765 8999999999999999999999999999999999999999999764 3346666553
No 54
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=1.1e-21 Score=203.17 Aligned_cols=313 Identities=18% Similarity=0.298 Sum_probs=221.7
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHh-c-CC---CC--ceEEEecC-cchHHHHH---HH
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-G-ER---IS--PHLVVAPL-STLRNWER---EF 352 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~-~-~~---~~--~~LIv~P~-~ll~qW~~---e~ 352 (819)
..+.|-|..++..+ ..++.+.+-..||+|||+..+.-+.... . +. ++ -.|||+|+ .|..|-.. .|
T Consensus 27 ~~mTpVQa~tIPll----l~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 27 EKMTPVQAATIPLL----LKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cccCHHHHhhhHHH----hcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHH
Confidence 35889999999877 7889999999999999999877766655 2 21 22 46999997 44455433 44
Q ss_pred HHHcCCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc----ccccCCcc
Q 003450 353 ATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIK 428 (819)
Q Consensus 353 ~~~~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~----~~~l~~~~ 428 (819)
....|+++...+.|+......+..+. ...++|+|.|++.+... ...+....
T Consensus 103 ~~~l~~l~~~l~vGG~~v~~Di~~fk-------------------------ee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVEEDIKTFK-------------------------EEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred HHhhhccceEEEecCccHHHHHHHHH-------------------------HhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 55568999999999987776666552 24678999999987643 33355446
Q ss_pred ceEEEecccccccC--cccHHHHHHHhcccCcEE-EEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHH
Q 003450 429 WQCMIVDEGHRLKN--KDSKLFSSLKQYSTRHRV-LLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (819)
Q Consensus 429 ~~~lIvDEaH~~kn--~~s~~~~~l~~l~~~~~l-lLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~ 505 (819)
..++|+|||+++-. ....+...+..++..+|- |.|||-. ..+
T Consensus 158 Le~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~-----------------------------------~~v 202 (567)
T KOG0345|consen 158 LEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQT-----------------------------------QEV 202 (567)
T ss_pred cceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhh-----------------------------------HHH
Confidence 78999999999954 445677778888777775 4688831 111
Q ss_pred HHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEec-C--CHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCC
Q 003450 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVE-L--SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCH 582 (819)
Q Consensus 506 ~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~-l--s~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~h 582 (819)
..|.. . .|-......|... + +|...+.
T Consensus 203 ~dL~r----a-----------GLRNpv~V~V~~k~~~~tPS~L~~----------------------------------- 232 (567)
T KOG0345|consen 203 EDLAR----A-----------GLRNPVRVSVKEKSKSATPSSLAL----------------------------------- 232 (567)
T ss_pred HHHHH----h-----------hccCceeeeecccccccCchhhcc-----------------------------------
Confidence 11110 0 0100000000000 0 0000000
Q ss_pred CcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhh--CCCeEEEEeccCCh
Q 003450 583 PYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--KKWQYERIDGKVGG 660 (819)
Q Consensus 583 p~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~--~g~~~~~l~G~~~~ 660 (819)
-| ..+.+..|+..|.++|.. ...+|+|||-..-...++....|.. .+.++..+||.+++
T Consensus 233 ~Y-----------------~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q 293 (567)
T KOG0345|consen 233 EY-----------------LVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQ 293 (567)
T ss_pred ee-----------------eEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcc
Confidence 00 012345588888888877 3467999998887777777776653 57889999999999
Q ss_pred HHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEE
Q 003450 661 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRL 732 (819)
Q Consensus 661 ~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l 732 (819)
.+|.+++..|.+..++ +|++|+++++|||+++.|.||.||||-+|..+.+|.||+.|.|......||-.
T Consensus 294 ~~R~k~~~~F~~~~~~---vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~ 362 (567)
T KOG0345|consen 294 KARAKVLEAFRKLSNG---VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLN 362 (567)
T ss_pred hhHHHHHHHHHhccCc---eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEec
Confidence 9999999999884444 69999999999999999999999999999999999999999998877666543
No 55
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=3.8e-22 Score=207.67 Aligned_cols=365 Identities=17% Similarity=0.216 Sum_probs=221.2
Q ss_pred CCchhHHHHHHHHHHhhc-----CCCceEEEcCCCCcHHHHHH-HHHHHHhcCCCC--ceEEEecC-cchHHHHHHHHHH
Q 003450 285 SLHPYQLEGLNFLRFSWS-----KQTHVILADEMGLGKTIQSI-AFLASLFGERIS--PHLVVAPL-STLRNWEREFATW 355 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~-----~~~~~iLade~GlGKT~~~i-~~l~~l~~~~~~--~~LIv~P~-~ll~qW~~e~~~~ 355 (819)
.+.|-|...+.|+..-.. ..+...+..+||+|||+... -++..+...... +.+||+|. .|+.|-.++|.+|
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 589999999999866544 35678899999999999854 444444444333 89999996 6668899999999
Q ss_pred cC--CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCc---cce
Q 003450 356 AP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI---KWQ 430 (819)
Q Consensus 356 ~p--~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~---~~~ 430 (819)
.+ ++.|....|...-+...+++.- .......||+|+|++.+......-+.+ +..
T Consensus 239 ~~~tgL~V~~~sgq~sl~~E~~qL~~---------------------~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~Lr 297 (620)
T KOG0350|consen 239 NSGTGLAVCSLSGQNSLEDEARQLAS---------------------DPPECRIDILVATPGRLVDHLNNTKSFDLKHLR 297 (620)
T ss_pred ccCCceEEEecccccchHHHHHHHhc---------------------CCCccccceEEcCchHHHHhccCCCCcchhhce
Confidence 96 4667777787777666665420 111236799999999998765543333 567
Q ss_pred EEEecccccccCcc--cHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHH
Q 003450 431 CMIVDEGHRLKNKD--SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (819)
Q Consensus 431 ~lIvDEaH~~kn~~--s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l 508 (819)
++|||||+|+.+.. .-+...+..++...++.+.+ .++.+..-..|..++..
T Consensus 298 fLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~--------nii~~~~~~~pt~~~e~------------------- 350 (620)
T KOG0350|consen 298 FLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLD--------NIIRQRQAPQPTVLSEL------------------- 350 (620)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChh--------hhhhhcccCCchhhHHH-------------------
Confidence 89999999996533 22223333333332222211 11111110111100000
Q ss_pred HHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCC
Q 003450 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (819)
Q Consensus 509 ~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~ 588 (819)
... .. ....+.++-.+-+.+.+.- +.+..| -..+|.++..
T Consensus 351 ~t~------------~~------------~~~~~l~kL~~satLsqdP--------------~Kl~~l--~l~~Prl~~v 390 (620)
T KOG0350|consen 351 LTK------------LG------------KLYPPLWKLVFSATLSQDP--------------SKLKDL--TLHIPRLFHV 390 (620)
T ss_pred Hhh------------cC------------CcCchhHhhhcchhhhcCh--------------HHHhhh--hcCCCceEEe
Confidence 000 00 0000011111111110000 000011 1233433322
Q ss_pred CCCCcc---CcHHHHHHhhhcCc--hHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHh----hCCCeEEEEeccCC
Q 003450 589 VEPDIE---DTNESFKQLLESSG--KLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKWQYERIDGKVG 659 (819)
Q Consensus 589 ~~~~~~---~~~~~~~~l~~~s~--Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~----~~g~~~~~l~G~~~ 659 (819)
..+... -+.......+-.+. |-..+..++.. .+..++|+|++.......|...|. .-..++..++|+.+
T Consensus 391 ~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~ 468 (620)
T KOG0350|consen 391 SKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLN 468 (620)
T ss_pred ecccceeeecChhhhhceeecccccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhh
Confidence 211110 01111111222222 44455566654 347899999999888777777665 45677778999999
Q ss_pred hHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHH
Q 003450 660 GAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (819)
Q Consensus 660 ~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvE 739 (819)
...|.+.+.+|+.++. .+||+++++++|||+..++.||.||+|-+...|++|.||..|.||... .|.++... |
T Consensus 469 ~k~r~k~l~~f~~g~i---~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~--a~tll~~~--~ 541 (620)
T KOG0350|consen 469 GKRRYKMLEKFAKGDI---NVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGY--AITLLDKH--E 541 (620)
T ss_pred HHHHHHHHHHHhcCCc---eEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCce--EEEeeccc--c
Confidence 9999999999987654 489999999999999999999999999999999999999999999764 34555544 3
Q ss_pred HHHHHHH
Q 003450 740 ERMMQMT 746 (819)
Q Consensus 740 e~i~~~~ 746 (819)
++.|...
T Consensus 542 ~r~F~kl 548 (620)
T KOG0350|consen 542 KRLFSKL 548 (620)
T ss_pred chHHHHH
Confidence 4444433
No 56
>PRK02362 ski2-like helicase; Provisional
Probab=99.89 E-value=1e-21 Score=233.63 Aligned_cols=319 Identities=18% Similarity=0.140 Sum_probs=200.2
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcC-CCeEE
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMNVV 362 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p-~~~v~ 362 (819)
+|+|+|.+++..+ +..+++++++.+||+|||+.+...+..... ..+++|+|+|. +++.|+.+++.++.+ ++++.
T Consensus 23 ~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~-~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~ 98 (737)
T PRK02362 23 ELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIA-RGGKALYIVPLRALASEKFEEFERFEELGVRVG 98 (737)
T ss_pred cCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHh-cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEE
Confidence 6999999998742 367899999999999999998655444332 23589999995 888999999988754 67888
Q ss_pred EEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccc--cCCccceEEEecccccc
Q 003450 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHRL 440 (819)
Q Consensus 363 ~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~--l~~~~~~~lIvDEaH~~ 440 (819)
.++|...... ......+|+|+|++.+...... ..--..++||+||+|.+
T Consensus 99 ~~tGd~~~~~-----------------------------~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 99 ISTGDYDSRD-----------------------------EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLI 149 (737)
T ss_pred EEeCCcCccc-----------------------------cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcccc
Confidence 8888643321 0113568999999987432211 11124689999999998
Q ss_pred cCcc--cHHHHHHHh---c-ccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhh
Q 003450 441 KNKD--SKLFSSLKQ---Y-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (819)
Q Consensus 441 kn~~--s~~~~~l~~---l-~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~ 514 (819)
.+.. ...-..+.. + .....++||||.- +..++...+ +...+.+.
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~--n~~~la~wl---~~~~~~~~------------------------- 199 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIG--NADELADWL---DAELVDSE------------------------- 199 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCC--CHHHHHHHh---CCCcccCC-------------------------
Confidence 6432 222222222 2 2446799999962 344443322 11111000
Q ss_pred HHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCcc
Q 003450 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (819)
Q Consensus 515 ~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~ 594 (819)
.-|-.....+... . .++ + .. ....
T Consensus 200 ------------~rpv~l~~~v~~~--~---~~~----------~---~~----------------~~~~---------- 223 (737)
T PRK02362 200 ------------WRPIDLREGVFYG--G---AIH----------F---DD----------------SQRE---------- 223 (737)
T ss_pred ------------CCCCCCeeeEecC--C---eec----------c---cc----------------cccc----------
Confidence 0000000000000 0 000 0 00 0000
Q ss_pred CcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhC---------------------------
Q 003450 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--------------------------- 647 (819)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~--------------------------- 647 (819)
+....+.. ...++......++++|||++.+...+.+...|...
T Consensus 224 ---------~~~~~~~~-~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 293 (737)
T PRK02362 224 ---------VEVPSKDD-TLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTE 293 (737)
T ss_pred ---------CCCccchH-HHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCcc
Confidence 00011111 11222233346889999999988766666555321
Q ss_pred ---------CCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEE----eC-----CCCCcc
Q 003450 648 ---------KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YD-----SDWNPH 709 (819)
Q Consensus 648 ---------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~----~d-----~~wnp~ 709 (819)
...+..++|+++..+|..+.+.|+++ .+.+|++|.+++.|+|+++...||. || .+.++.
T Consensus 294 ~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G---~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~ 370 (737)
T PRK02362 294 TSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDR---LIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVL 370 (737)
T ss_pred ccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcC---CCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHH
Confidence 13578899999999999999999764 3458999999999999999888876 77 477889
Q ss_pred hHHHHhHhhhhcCCCCcEEEEEEEeC
Q 003450 710 ADLQAMARAHRLGQTNKVMIFRLITR 735 (819)
Q Consensus 710 ~~~Qa~gR~~R~Gq~~~V~v~~li~~ 735 (819)
.+.|++||++|.|....-.++-+...
T Consensus 371 ~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 371 EYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred HHHHHhhcCCCCCCCCCceEEEEecC
Confidence 99999999999998765445555433
No 57
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.88 E-value=5.7e-22 Score=206.75 Aligned_cols=310 Identities=18% Similarity=0.291 Sum_probs=213.0
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc-CC----CC-ceEEEecC-cchHHHHHHHH---H
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ER----IS-PHLVVAPL-STLRNWEREFA---T 354 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~-~~----~~-~~LIv~P~-~ll~qW~~e~~---~ 354 (819)
+|.+-|...+.-+ ..+++++.++-||+|||+..+..+..+.. .. .+ .+|||||+ .+..|-..|.+ +
T Consensus 104 ~MT~VQ~~ti~pl----l~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~ 179 (543)
T KOG0342|consen 104 TMTPVQQKTIPPL----LEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLK 179 (543)
T ss_pred chhHHHHhhcCcc----CCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHh
Confidence 5888888887655 67889999999999999886655544432 21 12 68999997 55567666554 4
Q ss_pred HcCCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCC---ccceE
Q 003450 355 WAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKP---IKWQC 431 (819)
Q Consensus 355 ~~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~---~~~~~ 431 (819)
+.+...+.+..|+..-+...+.. . ...+++|+|++.+......-.. ..-++
T Consensus 180 ~h~~~~v~~viGG~~~~~e~~kl-------------------------~-k~~niliATPGRLlDHlqNt~~f~~r~~k~ 233 (543)
T KOG0342|consen 180 YHESITVGIVIGGNNFSVEADKL-------------------------V-KGCNILIATPGRLLDHLQNTSGFLFRNLKC 233 (543)
T ss_pred hCCCcceEEEeCCccchHHHHHh-------------------------h-ccccEEEeCCchHHhHhhcCCcchhhccce
Confidence 45677888888876665443332 1 2678999999999764333222 23378
Q ss_pred EEecccccccC--cccHHHHHHHhcc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHH
Q 003450 432 MIVDEGHRLKN--KDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (819)
Q Consensus 432 lIvDEaH~~kn--~~s~~~~~l~~l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l 508 (819)
+|+|||+++.. ..-.+-+.+..+. ....++.|||- ...+..|
T Consensus 234 lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~-----------------------------------~~kV~~l 278 (543)
T KOG0342|consen 234 LVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQ-----------------------------------PSKVKDL 278 (543)
T ss_pred eEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCC-----------------------------------cHHHHHH
Confidence 99999999943 3344555555554 34558889983 1111111
Q ss_pred HHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCC
Q 003450 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (819)
Q Consensus 509 ~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~ 588 (819)
.... +.+ + ...+.|. .+....... .+.| -|+
T Consensus 279 ~~~~----L~~---d---------~~~v~~~-----------------------d~~~~~The---~l~Q----gyv--- 309 (543)
T KOG0342|consen 279 ARGA----LKR---D---------PVFVNVD-----------------------DGGERETHE---RLEQ----GYV--- 309 (543)
T ss_pred HHHh----hcC---C---------ceEeecC-----------------------CCCCcchhh---cccc----eEE---
Confidence 1110 000 0 0000000 000000000 0000 000
Q ss_pred CCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHH
Q 003450 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (819)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~ 668 (819)
+.....++.++..+|.+...+ .|++||+....+...+.+.|++..+++..+||..++..|..+..
T Consensus 310 --------------v~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~ 374 (543)
T KOG0342|consen 310 --------------VAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFF 374 (543)
T ss_pred --------------eccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHH
Confidence 011234467777888776543 89999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCc
Q 003450 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNK 726 (819)
Q Consensus 669 ~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 726 (819)
+|...+++ +|++|+++++|+|+++++.||-||+|-+|.+|++|+||.+|.|-+..
T Consensus 375 ~F~kaesg---IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 375 EFCKAESG---ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred HHhhcccc---eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCce
Confidence 99988877 89999999999999999999999999999999999999999776544
No 58
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.87 E-value=9.9e-21 Score=215.61 Aligned_cols=387 Identities=16% Similarity=0.156 Sum_probs=218.3
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcC--CCeE
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--QMNV 361 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p--~~~v 361 (819)
.|+|||.+.+..+ ..+.|.|..+.||.|||++++..+.... .....++||+|+ .|..+|.+++..++- ++.+
T Consensus 68 glrpydVQlig~l----~l~~G~Iaem~TGeGKTLta~Lpa~l~a-L~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv 142 (762)
T TIGR03714 68 GMFPYDVQVLGAI----VLHQGNIAEMKTGEGKTLTATMPLYLNA-LTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTV 142 (762)
T ss_pred CCCccHHHHHHHH----HhcCCceeEecCCcchHHHHHHHHHHHh-hcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcE
Confidence 3677877777655 3345689999999999999766543222 223479999997 566777777655432 6677
Q ss_pred EEEecChh---HHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc----c-----cccCCccc
Q 003450 362 VMYVGTSQ---ARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----S-----ASLKPIKW 429 (819)
Q Consensus 362 ~~~~g~~~---~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~----~-----~~l~~~~~ 429 (819)
.+..+... .....+. ....++|+++|++.+..+ . ......++
T Consensus 143 ~~~~~~s~~~~~~~~~rr--------------------------~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l 196 (762)
T TIGR03714 143 SLGVVDDPDEEYDANEKR--------------------------KIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPF 196 (762)
T ss_pred EEEECCCCccccCHHHHH--------------------------HhCCCCEEEECchhhhhhHHHHHhhcchhhcccccC
Confidence 66554311 1111111 124689999999998432 1 11222357
Q ss_pred eEEEecccccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhh----cccCCCC-C-----------C-ChHHH
Q 003450 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLM----HFLDAGK-F-----------G-SLEEF 492 (819)
Q Consensus 430 ~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll----~~l~~~~-~-----------~-~~~~f 492 (819)
.++||||||.+--.. ++..+.+||.|-.. ..+|... ..|.++. | . .....
T Consensus 197 ~~~IVDEaDsILiDe-----------artpliisg~~~~~--~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~ 263 (762)
T TIGR03714 197 NYVIVDEVDSVLLDS-----------AQTPLVISGAPRVQ--SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEK 263 (762)
T ss_pred cEEEEecHhhHhhcc-----------CcCCeeeeCCCccc--hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHH
Confidence 799999999873322 33457788876433 3455444 2233321 1 0 01111
Q ss_pred HHHHhc---cchHH---HHHHHHHHHhhH-HHHHhhhhhhhcCCCceEEEEEecCCH-------HHHHHHHHHHH-----
Q 003450 493 QEEFKD---INQEE---QISRLHRMLAPH-LLRRVKKDVMKELPPKKELILRVELSS-------KQKEYYKAILT----- 553 (819)
Q Consensus 493 ~~~~~~---~~~~~---~~~~l~~~l~~~-~lrr~k~dv~~~lp~~~~~~v~~~ls~-------~q~~~y~~i~~----- 553 (819)
.+.+-. ..... ....+...|..+ ++.+-..-+.. .....+|- +.|. .+.-+.+.+..
T Consensus 264 ~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~---~~~v~ivD-~~TGr~~~gr~~~~GLhQaieaKE~v~ 339 (762)
T TIGR03714 264 AEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVT---NGEVVLLD-RITGRLLEGTKLQSGIHQAIEAKEHVE 339 (762)
T ss_pred HHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEE---CCEEEEEE-CCCCcCCCCCCcchHHHHHHHhhcCCC
Confidence 122111 11111 122222222222 12211111111 11111111 1110 00001111100
Q ss_pred -----------------HHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHH
Q 003450 554 -----------------RNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKM 616 (819)
Q Consensus 554 -----------------~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~l 616 (819)
+.+..+...+|+. .....++.++.+-+.+.-+........+....-......|...+.+.
T Consensus 340 i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa---~~~~~Ef~~iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~ 416 (762)
T TIGR03714 340 LSKETRAMASITYQNLFKMFNKLSGMTGTG---KVAEKEFIETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLED 416 (762)
T ss_pred CCCCceeeeeeeHHHHHhhCchhcccCCCC---hhHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHH
Confidence 0111222223332 12233455555444332211111000000001112345689999999
Q ss_pred HHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcc--
Q 003450 617 MVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLA-- 694 (819)
Q Consensus 617 l~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~-- 694 (819)
+......|.++||||+.....+.|...|...|+++..++|.+...+|..+...|+. + .++|+|+.+|+|+|++
T Consensus 417 i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~---g--~VlIATdmAgRGtDI~l~ 491 (762)
T TIGR03714 417 VKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQK---G--AVTVATSMAGRGTDIKLG 491 (762)
T ss_pred HHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCC---C--eEEEEccccccccCCCCC
Confidence 98888889999999999999999999999999999999999988887666555533 2 3799999999999999
Q ss_pred -------cCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEE
Q 003450 695 -------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (819)
Q Consensus 695 -------~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 728 (819)
+.++|+.++++-+... .|+.||++|.|......
T Consensus 492 ~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~ 531 (762)
T TIGR03714 492 KGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQ 531 (762)
T ss_pred ccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEE
Confidence 7899999999976644 99999999999876543
No 59
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=5.4e-21 Score=203.29 Aligned_cols=311 Identities=18% Similarity=0.254 Sum_probs=216.2
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHH-HHHHHhcCCC-----------CceEEEecC-cchHHHHH
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGERI-----------SPHLVVAPL-STLRNWER 350 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~-~l~~l~~~~~-----------~~~LIv~P~-~ll~qW~~ 350 (819)
..+.|+|+.++.-+ ..|++.+.+++||+|||...+. ++.++++.+. ...||++|+ .|+.|-..
T Consensus 95 ~~ptpvQk~sip~i----~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~n 170 (482)
T KOG0335|consen 95 TKPTPVQKYSIPII----SGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYN 170 (482)
T ss_pred cCCCcceeecccee----ecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHH
Confidence 45888999998766 8899999999999999988655 4444544321 268999996 88899999
Q ss_pred HHHHHc--CCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--ccccCC
Q 003450 351 EFATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKP 426 (819)
Q Consensus 351 e~~~~~--p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~ 426 (819)
|..++. ..+.+++.+|..+.+...+.. ...++++++|++.+..- ...+..
T Consensus 171 ea~k~~~~s~~~~~~~ygg~~~~~q~~~~--------------------------~~gcdIlvaTpGrL~d~~e~g~i~l 224 (482)
T KOG0335|consen 171 EARKFSYLSGMKSVVVYGGTDLGAQLRFI--------------------------KRGCDILVATPGRLKDLIERGKISL 224 (482)
T ss_pred HHHhhcccccceeeeeeCCcchhhhhhhh--------------------------ccCccEEEecCchhhhhhhcceeeh
Confidence 998886 357777777776665544442 25789999999998643 222222
Q ss_pred ccceEEEecccccccC---cccHHHHHHHhcc-----cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhc
Q 003450 427 IKWQCMIVDEGHRLKN---KDSKLFSSLKQYS-----TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD 498 (819)
Q Consensus 427 ~~~~~lIvDEaH~~kn---~~s~~~~~l~~l~-----~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~ 498 (819)
-...++|+|||.++-. ....+.+.+.... ...-++.|||=-
T Consensus 225 ~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp------------------------------- 273 (482)
T KOG0335|consen 225 DNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFP------------------------------- 273 (482)
T ss_pred hhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCC-------------------------------
Confidence 2345899999999854 2334444444332 234577787720
Q ss_pred cchHHHHHHHHHHHhhHHHH-Hhhhh---hhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Q 003450 499 INQEEQISRLHRMLAPHLLR-RVKKD---VMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVM 574 (819)
Q Consensus 499 ~~~~~~~~~l~~~l~~~~lr-r~k~d---v~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~ 574 (819)
.. +..+...++.- .+.-. +...-......+++
T Consensus 274 ----~~---iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~------------------------------------- 309 (482)
T KOG0335|consen 274 ----KE---IQRLAADFLKDNYIFLAVGRVGSTSENITQKILF------------------------------------- 309 (482)
T ss_pred ----hh---hhhhHHHHhhccceEEEEeeeccccccceeEeee-------------------------------------
Confidence 00 11111111000 00000 00000000111111
Q ss_pred HHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHH---hc----CceEEEEecchhHHHHHHHHHhhC
Q 003450 575 ELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK---EQ----GHRVLIYSQFQHMLDLLEDYLTFK 647 (819)
Q Consensus 575 ~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~---~~----g~kvlIFs~~~~~ld~L~~~L~~~ 647 (819)
+....|...|.++|.... .+ -++++||+.....++.|..+|...
T Consensus 310 -----------------------------V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~ 360 (482)
T KOG0335|consen 310 -----------------------------VNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN 360 (482)
T ss_pred -----------------------------ecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC
Confidence 223445555556655433 11 258999999999999999999999
Q ss_pred CCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcE
Q 003450 648 KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (819)
Q Consensus 648 g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V 727 (819)
|+++..++|..++.+|.++++.|.++... +||+|.++++|||++.+.+||+||.|-+-..|++|+||++|.|+.-..
T Consensus 361 ~~~~~sIhg~~tq~er~~al~~Fr~g~~p---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~a 437 (482)
T KOG0335|consen 361 GYPAKSIHGDRTQIEREQALNDFRNGKAP---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRA 437 (482)
T ss_pred CCCceeecchhhhhHHHHHHHHhhcCCcc---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCcee
Confidence 99999999999999999999999876655 899999999999999999999999999999999999999999998766
Q ss_pred EEEE
Q 003450 728 MIFR 731 (819)
Q Consensus 728 ~v~~ 731 (819)
+.|.
T Consensus 438 tsf~ 441 (482)
T KOG0335|consen 438 TSFF 441 (482)
T ss_pred EEEe
Confidence 5443
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.87 E-value=2.6e-20 Score=204.52 Aligned_cols=327 Identities=14% Similarity=0.193 Sum_probs=195.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcC-CCCceEEEecC-cchHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCC
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKN 384 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~-~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~~~~g~~~~r~~~~~~e~~~~~~ 384 (819)
+++.++||+|||.+++.++...... ...++++++|. +++.|+.+.+..++.. ++..++|...... .... .+.
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~-~~~~----~~~ 75 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKR-IKEM----GDS 75 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHH-Hhcc----CCc
Confidence 5899999999999988877765543 34589999995 8889999999988633 5666666543211 0000 000
Q ss_pred ccccccccCCccccccccccccccEEEchhhHHhhcccc-c-------CCccceEEEecccccccCccc-HHHHHHHhcc
Q 003450 385 PKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS-L-------KPIKWQCMIVDEGHRLKNKDS-KLFSSLKQYS 455 (819)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~-l-------~~~~~~~lIvDEaH~~kn~~s-~~~~~l~~l~ 455 (819)
....... .............+++++|++.+...... + ..+...+||+||+|.+..... .+...+..+.
T Consensus 76 -~~~~~~~--~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~ 152 (358)
T TIGR01587 76 -EEFEHLF--PLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK 152 (358)
T ss_pred -hhHHHHH--HHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 0000000 00000001123567999999987643222 1 112337899999999865322 2223333332
Q ss_pred --cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHHHHHhhhhhhhcCCCceE
Q 003450 456 --TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKE 533 (819)
Q Consensus 456 --~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~ 533 (819)
....+++|||+- +.+.++.. .+ ........++
T Consensus 153 ~~~~~~i~~SATlp-~~l~~~~~-------------------------------------~~-----~~~~~~~~~~--- 186 (358)
T TIGR01587 153 DNDVPILLMSATLP-KFLKEYAE-------------------------------------KI-----GYVEFNEPLD--- 186 (358)
T ss_pred HcCCCEEEEecCch-HHHHHHHh-------------------------------------cC-----CCcccccCCC---
Confidence 346799999962 00000000 00 0000000000
Q ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHH
Q 003450 534 LILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLL 613 (819)
Q Consensus 534 ~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l 613 (819)
..+. +....|++.... .....|...+
T Consensus 187 ------~~~~---------------------------------~~~~~~~~~~~~---------------~~~~~~~~~l 212 (358)
T TIGR01587 187 ------LKEE---------------------------------RRFERHRFIKIE---------------SDKVGEISSL 212 (358)
T ss_pred ------Cccc---------------------------------cccccccceeec---------------cccccCHHHH
Confidence 0000 000011110000 0012345556
Q ss_pred HHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCC--eEEEEeccCChHHHHHH----HHHhcCCCCCcEEEEeccccc
Q 003450 614 DKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKW--QYERIDGKVGGAERQIR----IDRFNAKNSSRFCFLLSTRAG 687 (819)
Q Consensus 614 ~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~--~~~~l~G~~~~~~R~~~----i~~F~~~~~~~~v~L~st~a~ 687 (819)
.+++..+ ..+.++|||++.....+.+.+.|...+. .+..++|.++..+|.+. ++.|.++. ..+|++|+++
T Consensus 213 ~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~---~~ilvaT~~~ 288 (358)
T TIGR01587 213 ERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNE---KFVIVATQVI 288 (358)
T ss_pred HHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCC---CeEEEECcch
Confidence 6666443 3578999999999999999999987766 48999999999999764 88897643 3489999999
Q ss_pred cccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCC----cEEEEEEEeCC---CHHHHHHHHHHHh
Q 003450 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN----KVMIFRLITRG---SIEERMMQMTKKK 749 (819)
Q Consensus 688 ~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~----~V~v~~li~~~---TvEe~i~~~~~~K 749 (819)
++|||+. ++.||.++.+ +..++||+||++|.|... .|.||.....+ .++..++++..++
T Consensus 289 ~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~~~ 354 (358)
T TIGR01587 289 EASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTIQK 354 (358)
T ss_pred hceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHHHH
Confidence 9999995 8899988765 789999999999999763 45555554444 4555665554444
No 61
>PRK01172 ski2-like helicase; Provisional
Probab=99.87 E-value=7.2e-21 Score=224.92 Aligned_cols=304 Identities=19% Similarity=0.206 Sum_probs=192.0
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcC-CCeE
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMNV 361 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p-~~~v 361 (819)
.+|+|+|.++++.+ ..+++++++.+||+|||+++..++......+ +++++|+|. +++.|+.+++.++.. +..+
T Consensus 21 ~~l~~~Q~~ai~~l----~~~~nvlv~apTGSGKTl~a~lail~~l~~~-~k~v~i~P~raLa~q~~~~~~~l~~~g~~v 95 (674)
T PRK01172 21 FELYDHQRMAIEQL----RKGENVIVSVPTAAGKTLIAYSAIYETFLAG-LKSIYIVPLRSLAMEKYEELSRLRSLGMRV 95 (674)
T ss_pred CCCCHHHHHHHHHH----hcCCcEEEECCCCchHHHHHHHHHHHHHHhC-CcEEEEechHHHHHHHHHHHHHHhhcCCeE
Confidence 46999999999865 6788999999999999998876655544332 589999996 788888888887643 5677
Q ss_pred EEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhccc--ccCCccceEEEeccccc
Q 003450 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDEGHR 439 (819)
Q Consensus 362 ~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~lIvDEaH~ 439 (819)
...+|....... .....+++|+|++.+..... ...-.++++||+||+|.
T Consensus 96 ~~~~G~~~~~~~-----------------------------~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~ 146 (674)
T PRK01172 96 KISIGDYDDPPD-----------------------------FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHI 146 (674)
T ss_pred EEEeCCCCCChh-----------------------------hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchh
Confidence 777776432110 01256899999987643211 11112568999999999
Q ss_pred ccCcc-c-HHHHHH---Hhcc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHh
Q 003450 440 LKNKD-S-KLFSSL---KQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (819)
Q Consensus 440 ~kn~~-s-~~~~~l---~~l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~ 513 (819)
+.... + .+-..+ ..+. ..+.++||||+- +..++-. +++...+..
T Consensus 147 l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~--n~~~la~---wl~~~~~~~------------------------- 196 (674)
T PRK01172 147 IGDEDRGPTLETVLSSARYVNPDARILALSATVS--NANELAQ---WLNASLIKS------------------------- 196 (674)
T ss_pred ccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccC--CHHHHHH---HhCCCccCC-------------------------
Confidence 86432 1 222222 2222 346799999972 3333322 222111100
Q ss_pred hHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCc
Q 003450 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (819)
Q Consensus 514 ~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~ 593 (819)
. ....|- ...+... . ..+ .+...
T Consensus 197 ---------~-~r~vpl-~~~i~~~--~----~~~-------------------------------------~~~~~--- 219 (674)
T PRK01172 197 ---------N-FRPVPL-KLGILYR--K----RLI-------------------------------------LDGYE--- 219 (674)
T ss_pred ---------C-CCCCCe-EEEEEec--C----eee-------------------------------------ecccc---
Confidence 0 000111 1111100 0 000 00000
Q ss_pred cCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhC-------------------------C
Q 003450 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-------------------------K 648 (819)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~-------------------------g 648 (819)
..+. .+..++......++++|||++.+...+.+...|... .
T Consensus 220 -------------~~~~-~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 285 (674)
T PRK01172 220 -------------RSQV-DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLP 285 (674)
T ss_pred -------------cccc-cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHh
Confidence 0000 122344444556889999999988777777666432 1
Q ss_pred CeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCC---------CCCcchHHHHhHhhh
Q 003450 649 WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDS---------DWNPHADLQAMARAH 719 (819)
Q Consensus 649 ~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~---------~wnp~~~~Qa~gR~~ 719 (819)
..+..++|+++.++|..+.+.|+++. +.+|++|.+++.|+|+++ .+||++|. ++++..+.|++||++
T Consensus 286 ~gv~~~hagl~~~eR~~ve~~f~~g~---i~VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAG 361 (674)
T PRK01172 286 HGVAFHHAGLSNEQRRFIEEMFRNRY---IKVIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAG 361 (674)
T ss_pred cCEEEecCCCCHHHHHHHHHHHHcCC---CeEEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCC
Confidence 24677899999999999999997643 348999999999999996 57777664 356778899999999
Q ss_pred hcCCCCc
Q 003450 720 RLGQTNK 726 (819)
Q Consensus 720 R~Gq~~~ 726 (819)
|.|....
T Consensus 362 R~g~d~~ 368 (674)
T PRK01172 362 RPGYDQY 368 (674)
T ss_pred CCCCCCc
Confidence 9997655
No 62
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.87 E-value=1.2e-20 Score=217.18 Aligned_cols=313 Identities=19% Similarity=0.205 Sum_probs=192.9
Q ss_pred CCCCchhHHHHHHHHHHhhcCCC-ceEEEcCCCCcHHHHHHHHHHHHhcCC--CCceEEEecC-cchHHHHHHHHHHcC-
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPL-STLRNWEREFATWAP- 357 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~-~~iLade~GlGKT~~~i~~l~~l~~~~--~~~~LIv~P~-~ll~qW~~e~~~~~p- 357 (819)
|.+++|||.+++..+ ..|+ ..++..+||+|||..+.+++..+.... ....++++|. .++.|-.+++.++.-
T Consensus 13 G~~PtpiQ~~~i~~i----l~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~ 88 (844)
T TIGR02621 13 GYSPFPWQLSLAERF----VAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGER 88 (844)
T ss_pred CCCCCHHHHHHHHHH----HcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHH
Confidence 455899999999866 4565 577789999999976555555442222 2244447796 777888888877763
Q ss_pred ------------------------CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEch
Q 003450 358 ------------------------QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTS 413 (819)
Q Consensus 358 ------------------------~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~t 413 (819)
.+++..++|.......+... ...++|||.|
T Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l--------------------------~~~p~IIVgT 142 (844)
T TIGR02621 89 LPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLD--------------------------PHRPAVIVGT 142 (844)
T ss_pred hcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhc--------------------------CCCCcEEEEC
Confidence 25667777776554443332 2467899999
Q ss_pred hhHHhhcccc--------cC------CccceEEEecccccccCcccHHHHHHHhc--cc----CcEEEEeCCCCCCChhH
Q 003450 414 YEMINLDSAS--------LK------PIKWQCMIVDEGHRLKNKDSKLFSSLKQY--ST----RHRVLLTGTPLQNNLDE 473 (819)
Q Consensus 414 y~~l~~~~~~--------l~------~~~~~~lIvDEaH~~kn~~s~~~~~l~~l--~~----~~~llLTgTP~~n~~~e 473 (819)
.+.+.+..-+ .. ..+-.++|+||||...+....+.+.+..+ .. ...+++|||+-. ...+
T Consensus 143 ~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~-ei~~ 221 (844)
T TIGR02621 143 VDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRT-DGPD 221 (844)
T ss_pred HHHHcCCccccccccccccccchhhhhccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCc-cHHH
Confidence 9888653321 00 12357999999993333333333444432 11 357999999721 1111
Q ss_pred HHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHH
Q 003450 474 LFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILT 553 (819)
Q Consensus 474 l~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~ 553 (819)
+ ...+. .. +....+..-.++.
T Consensus 222 l---~~~~~--------------------------------------~~-------p~~i~V~~~~l~a----------- 242 (844)
T TIGR02621 222 R---TTLLS--------------------------------------AE-------DYKHPVLKKRLAA----------- 242 (844)
T ss_pred H---HHHHc--------------------------------------cC-------Cceeecccccccc-----------
Confidence 0 00000 00 0000000000000
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHH-HHHHhcCceEEEEec
Q 003450 554 RNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMM-VKLKEQGHRVLIYSQ 632 (819)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll-~~l~~~g~kvlIFs~ 632 (819)
.++. + + +.. ....|+..+...+ ..+...+.++|||++
T Consensus 243 -----------------------~ki~-q-~-v~v----------------~~e~Kl~~lv~~L~~ll~e~g~~vLVF~N 280 (844)
T TIGR02621 243 -----------------------KKIV-K-L-VPP----------------SDEKFLSTMVKELNLLMKDSGGAILVFCR 280 (844)
T ss_pred -----------------------cceE-E-E-Eec----------------ChHHHHHHHHHHHHHHHhhCCCcEEEEEC
Confidence 0000 0 0 000 0011232222222 223345789999999
Q ss_pred chhHHHHHHHHHhhCCCeEEEEeccCChHHHH-----HHHHHhcC----CC----CCcEEEEeccccccccCCcccCCEE
Q 003450 633 FQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ-----IRIDRFNA----KN----SSRFCFLLSTRAGGLGINLATADTV 699 (819)
Q Consensus 633 ~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~-----~~i~~F~~----~~----~~~~v~L~st~a~~~GinL~~a~~V 699 (819)
....++.|.+.|...++ ..++|.+++.+|. +++++|.. +. .+...+||+|+++++|||+.. ++|
T Consensus 281 Tv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~V 357 (844)
T TIGR02621 281 TVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHL 357 (844)
T ss_pred CHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceE
Confidence 99999999999998887 8999999999999 78899976 21 112358999999999999986 899
Q ss_pred EEeCCCCCcchHHHHhHhhhhcCCCCc--EEEEEE
Q 003450 700 IIYDSDWNPHADLQAMARAHRLGQTNK--VMIFRL 732 (819)
Q Consensus 700 I~~d~~wnp~~~~Qa~gR~~R~Gq~~~--V~v~~l 732 (819)
|++..+ ...++||+||++|.|.... +.++.+
T Consensus 358 I~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 358 VCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred EECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 987766 4799999999999998643 444433
No 63
>PRK00254 ski2-like helicase; Provisional
Probab=99.86 E-value=3.1e-20 Score=220.43 Aligned_cols=317 Identities=19% Similarity=0.177 Sum_probs=197.3
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHH-HHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcC-CCe
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMN 360 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i-~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p-~~~ 360 (819)
.+|+|+|.+++.. .+..+++++++.+||+|||+.+. +++..+.. ..+++|+|+|. .++.|+.+++..|.. +..
T Consensus 22 ~~l~~~Q~~ai~~---~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~ 97 (720)
T PRK00254 22 EELYPPQAEALKS---GVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-EGGKAVYLVPLKALAEEKYREFKDWEKLGLR 97 (720)
T ss_pred CCCCHHHHHHHHH---HHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-cCCeEEEEeChHHHHHHHHHHHHHHhhcCCE
Confidence 3699999999863 23678999999999999999984 44444443 34589999996 788888888887642 577
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc----cccCCccceEEEecc
Q 003450 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS----ASLKPIKWQCMIVDE 436 (819)
Q Consensus 361 v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~----~~l~~~~~~~lIvDE 436 (819)
+..++|....... ....++|+|+|++.+.... ..+ -+.++||+||
T Consensus 98 v~~~~Gd~~~~~~-----------------------------~~~~~~IiV~Tpe~~~~ll~~~~~~l--~~l~lvViDE 146 (720)
T PRK00254 98 VAMTTGDYDSTDE-----------------------------WLGKYDIIIATAEKFDSLLRHGSSWI--KDVKLVVADE 146 (720)
T ss_pred EEEEeCCCCCchh-----------------------------hhccCCEEEEcHHHHHHHHhCCchhh--hcCCEEEEcC
Confidence 8888887443210 0135789999999875322 122 2568999999
Q ss_pred cccccCc--ccHHHHHHHhcc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHh
Q 003450 437 GHRLKNK--DSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (819)
Q Consensus 437 aH~~kn~--~s~~~~~l~~l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~ 513 (819)
+|.+... +..+...+..+. ....++||||.- |..++-..+ ....+..
T Consensus 147 ~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~--n~~~la~wl---~~~~~~~------------------------- 196 (720)
T PRK00254 147 IHLIGSYDRGATLEMILTHMLGRAQILGLSATVG--NAEELAEWL---NAELVVS------------------------- 196 (720)
T ss_pred cCccCCccchHHHHHHHHhcCcCCcEEEEEccCC--CHHHHHHHh---CCccccC-------------------------
Confidence 9998542 334444444443 457799999972 344443322 1111000
Q ss_pred hHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCc
Q 003450 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (819)
Q Consensus 514 ~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~ 593 (819)
+ ....|.... +. .. .+...... ..
T Consensus 197 ---------~-~rpv~l~~~-~~-~~-------------------------------------------~~~~~~~~-~~ 220 (720)
T PRK00254 197 ---------D-WRPVKLRKG-VF-YQ-------------------------------------------GFLFWEDG-KI 220 (720)
T ss_pred ---------C-CCCCcceee-Ee-cC-------------------------------------------CeeeccCc-ch
Confidence 0 000111000 00 00 00000000 00
Q ss_pred cCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhh---------------------------
Q 003450 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--------------------------- 646 (819)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~--------------------------- 646 (819)
. . . ...+..++......+.++|||++.+...+.+...|..
T Consensus 221 ----~---~---~---~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (720)
T PRK00254 221 ----E---R---F---PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTN 287 (720)
T ss_pred ----h---c---c---hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCc
Confidence 0 0 0 0111223334444688999999987765544433311
Q ss_pred ------CCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEE-------eCCC-CCcchHH
Q 003450 647 ------KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-------YDSD-WNPHADL 712 (819)
Q Consensus 647 ------~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~-------~d~~-wnp~~~~ 712 (819)
.+..+..++|+++.++|..+.+.|+++. +.+|++|.+++.|+|+++.+.||. ++.+ .....+.
T Consensus 288 ~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~---i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~ 364 (720)
T PRK00254 288 EKLKKALRGGVAFHHAGLGRTERVLIEDAFREGL---IKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQ 364 (720)
T ss_pred HHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCC---CeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHH
Confidence 1235888999999999999999998653 458999999999999998887774 2222 2345789
Q ss_pred HHhHhhhhcCCCCcEEEEEEEeCCC
Q 003450 713 QAMARAHRLGQTNKVMIFRLITRGS 737 (819)
Q Consensus 713 Qa~gR~~R~Gq~~~V~v~~li~~~T 737 (819)
|++||++|.|..+.-.++-+...+.
T Consensus 365 Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 365 QMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HhhhccCCCCcCCCceEEEEecCcc
Confidence 9999999998776555665555443
No 64
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.86 E-value=1.1e-20 Score=197.96 Aligned_cols=338 Identities=16% Similarity=0.223 Sum_probs=218.4
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHH-HHHHHh---------cCCCC-ceEEEecC-cchHHHHHHH
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLF---------GERIS-PHLVVAPL-STLRNWEREF 352 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~-~l~~l~---------~~~~~-~~LIv~P~-~ll~qW~~e~ 352 (819)
...|.|..++--+ .++++.|...++|+|||...+. ++..+- +...+ ..+|++|+ .|..|-..|-
T Consensus 267 eptpIqR~aipl~----lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 267 EPTPIQRQAIPLG----LQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred CCchHHHhhccch----hccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 4778899988754 7889999999999999955322 222221 11123 57999997 5566778888
Q ss_pred HHHcC--CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhccc--ccCCcc
Q 003450 353 ATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIK 428 (819)
Q Consensus 353 ~~~~p--~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~ 428 (819)
.+|+- ++.++.+.|...-...-- .-...++++|+|+..+..... .|..-.
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq~f--------------------------qls~gceiviatPgrLid~Lenr~lvl~q 396 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQGF--------------------------QLSMGCEIVIATPGRLIDSLENRYLVLNQ 396 (673)
T ss_pred HHhcccccceEEEEecccchhhhhh--------------------------hhhccceeeecCchHHHHHHHHHHHHhcc
Confidence 88763 567777777644322100 112468899999998864322 233345
Q ss_pred ceEEEecccccccC--cccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHH
Q 003450 429 WQCMIVDEGHRLKN--KDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQIS 506 (819)
Q Consensus 429 ~~~lIvDEaH~~kn--~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~ 506 (819)
-.++|+|||.++-. ......+.|..+.. .|. .| +.+++ +...
T Consensus 397 ctyvvldeadrmiDmgfE~dv~~iL~~mPs-----------sn~-----------k~----~tde~----------~~~~ 440 (673)
T KOG0333|consen 397 CTYVVLDEADRMIDMGFEPDVQKILEQMPS-----------SNA-----------KP----DTDEK----------EGEE 440 (673)
T ss_pred CceEeccchhhhhcccccHHHHHHHHhCCc-----------ccc-----------CC----Cccch----------hhHH
Confidence 67899999999843 33344444444321 111 00 00000 0111
Q ss_pred HHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCccc
Q 003450 507 RLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (819)
Q Consensus 507 ~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~ 586 (819)
.+.+.+.. .+ --.......+.|++.-..+.+.++.+ |..+
T Consensus 441 ~~~~~~~~-----~k-------~yrqT~mftatm~p~verlar~ylr~----------------------------pv~v 480 (673)
T KOG0333|consen 441 RVRKNFSS-----SK-------KYRQTVMFTATMPPAVERLARSYLRR----------------------------PVVV 480 (673)
T ss_pred HHHhhccc-----cc-------ceeEEEEEecCCChHHHHHHHHHhhC----------------------------CeEE
Confidence 11111100 00 00112234456666554444433322 2211
Q ss_pred C-CCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHH
Q 003450 587 E-GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (819)
Q Consensus 587 ~-~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~ 665 (819)
. +........-+..-..+..+.|...|.++|... ...++|||.+....+|.|.+.|...||.+.++||+.++++|+.
T Consensus 481 tig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~ 558 (673)
T KOG0333|consen 481 TIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQREN 558 (673)
T ss_pred EeccCCCCccchheEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHH
Confidence 1 111110000011111234577888899998875 4679999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeC
Q 003450 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (819)
Q Consensus 666 ~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~ 735 (819)
++..|+++..+ +||+|+++|+|||++++++||.||..-+...|.+||||.+|.|+...+. -|+|.
T Consensus 559 aL~~fr~~t~d---IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gtai--Sflt~ 623 (673)
T KOG0333|consen 559 ALADFREGTGD---ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAI--SFLTP 623 (673)
T ss_pred HHHHHHhcCCC---EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeE--EEecc
Confidence 99999987766 7999999999999999999999999999999999999999999987654 34444
No 65
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.86 E-value=4.2e-20 Score=194.37 Aligned_cols=325 Identities=15% Similarity=0.238 Sum_probs=232.6
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhcCCCC-----ceEEEecC-cchHHHHHHHHHHc-
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERIS-----PHLVVAPL-STLRNWEREFATWA- 356 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~-i~~l~~l~~~~~~-----~~LIv~P~-~ll~qW~~e~~~~~- 356 (819)
.+.+.|..++... ..|+.+|=|.-||+|||+.. +-++..|+..++. -+|||.|+ .|..|--..+.+.+
T Consensus 91 ~~teiQ~~~Ip~a----L~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk 166 (758)
T KOG0343|consen 91 KMTEIQRDTIPMA----LQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGK 166 (758)
T ss_pred cHHHHHHhhcchh----ccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhh
Confidence 5778899988754 67889999999999999875 4456667665543 67999997 66677666666654
Q ss_pred -CCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc---ccccCCccceEE
Q 003450 357 -PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---SASLKPIKWQCM 432 (819)
Q Consensus 357 -p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~---~~~l~~~~~~~l 432 (819)
.++....+.|+.+......+ ....+|+|+|++.+... ...|..-+..++
T Consensus 167 ~h~fSaGLiiGG~~~k~E~eR---------------------------i~~mNILVCTPGRLLQHmde~~~f~t~~lQmL 219 (758)
T KOG0343|consen 167 HHDFSAGLIIGGKDVKFELER---------------------------ISQMNILVCTPGRLLQHMDENPNFSTSNLQML 219 (758)
T ss_pred ccccccceeecCchhHHHHHh---------------------------hhcCCeEEechHHHHHHhhhcCCCCCCcceEE
Confidence 36777888888776543322 24678999999999764 344566678899
Q ss_pred EecccccccCc--ccHHHHHHHhccc-CcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHH
Q 003450 433 IVDEGHRLKNK--DSKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (819)
Q Consensus 433 IvDEaH~~kn~--~s~~~~~l~~l~~-~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~ 509 (819)
|+|||+|+... ...+...+..++. +..||.|||+. +++.+|..|
T Consensus 220 vLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt-~svkdLaRL-------------------------------- 266 (758)
T KOG0343|consen 220 VLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQT-KSVKDLARL-------------------------------- 266 (758)
T ss_pred EeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccc-hhHHHHHHh--------------------------------
Confidence 99999998543 3344445555643 45699999983 122222111
Q ss_pred HHHhhHHHHHhhhhhhhcCCCceEEEEEe---cCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCccc
Q 003450 510 RMLAPHLLRRVKKDVMKELPPKKELILRV---ELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (819)
Q Consensus 510 ~~l~~~~lrr~k~dv~~~lp~~~~~~v~~---~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~ 586 (819)
.|....+..+.. .-+|. .|+|. |+
T Consensus 267 -----------------sL~dP~~vsvhe~a~~atP~-------------------------------~L~Q~----y~- 293 (758)
T KOG0343|consen 267 -----------------SLKDPVYVSVHENAVAATPS-------------------------------NLQQS----YV- 293 (758)
T ss_pred -----------------hcCCCcEEEEeccccccChh-------------------------------hhhhe----EE-
Confidence 111111222210 00110 11111 11
Q ss_pred CCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhh--CCCeEEEEeccCChHHHH
Q 003450 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--KKWQYERIDGKVGGAERQ 664 (819)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~--~g~~~~~l~G~~~~~~R~ 664 (819)
.+....|+..|...+.... ..|.|||...-..+..+.+.+.. .|++...++|.+++..|-
T Consensus 294 ----------------~v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ 355 (758)
T KOG0343|consen 294 ----------------IVPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRI 355 (758)
T ss_pred ----------------EEehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHH
Confidence 1234568888888887755 45999999999999999988875 499999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHH
Q 003450 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQ 744 (819)
Q Consensus 665 ~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~ 744 (819)
++..+|.... -++|.+|+.+++|||++++|.||-+|.|-+...|++|.||+.|.+...+..+|- + .+-||.|+.
T Consensus 356 ev~~~F~~~~---~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L--~-psEeE~~l~ 429 (758)
T KOG0343|consen 356 EVYKKFVRKR---AVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLML--T-PSEEEAMLK 429 (758)
T ss_pred HHHHHHHHhc---ceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEE--c-chhHHHHHH
Confidence 9999997643 358999999999999999999999999999999999999999998877665432 2 444688887
Q ss_pred HHHHhh
Q 003450 745 MTKKKM 750 (819)
Q Consensus 745 ~~~~K~ 750 (819)
.+++|.
T Consensus 430 ~Lq~k~ 435 (758)
T KOG0343|consen 430 KLQKKK 435 (758)
T ss_pred HHHHcC
Confidence 777663
No 66
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.86 E-value=9.9e-20 Score=200.11 Aligned_cols=304 Identities=17% Similarity=0.279 Sum_probs=212.3
Q ss_pred CCCchhHHHHHHHHHHhhcCC--CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcch-HHHHHHHHHHcC--C
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAP--Q 358 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~--~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll-~qW~~e~~~~~p--~ 358 (819)
.+|...|..+++-+..-.... -+=+|.+++|+|||+.|+..+......+ ..+..++|+.++ .|-.+.+.+|++ +
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G-~Q~ALMAPTEILA~QH~~~~~~~l~~~~ 339 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG-YQAALMAPTEILAEQHYESLRKWLEPLG 339 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC-CeeEEeccHHHHHHHHHHHHHHHhhhcC
Confidence 578999999998876555443 3568999999999999877777666554 377889998666 688999999996 6
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH 438 (819)
+.|...+|+..........+ ....+..++||.|+..+.....+- +..++|+||=|
T Consensus 340 i~V~lLtG~~kgk~r~~~l~----------------------~l~~G~~~ivVGTHALiQd~V~F~---~LgLVIiDEQH 394 (677)
T COG1200 340 IRVALLTGSLKGKARKEILE----------------------QLASGEIDIVVGTHALIQDKVEFH---NLGLVIIDEQH 394 (677)
T ss_pred CeEEEeecccchhHHHHHHH----------------------HHhCCCCCEEEEcchhhhcceeec---ceeEEEEeccc
Confidence 88888899766544322221 112356899999999987554432 56799999999
Q ss_pred cccCcccHHHHHHHhc-c-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHH
Q 003450 439 RLKNKDSKLFSSLKQY-S-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (819)
Q Consensus 439 ~~kn~~s~~~~~l~~l-~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~ 516 (819)
|+ +-.....|..- . .++.|.||||||+..+. ..-|++.+
T Consensus 395 RF---GV~QR~~L~~KG~~~Ph~LvMTATPIPRTLA--------------------lt~fgDld---------------- 435 (677)
T COG1200 395 RF---GVHQRLALREKGEQNPHVLVMTATPIPRTLA--------------------LTAFGDLD---------------- 435 (677)
T ss_pred cc---cHHHHHHHHHhCCCCCcEEEEeCCCchHHHH--------------------HHHhcccc----------------
Confidence 99 44444445444 3 57999999999866532 11222211
Q ss_pred HHHhhhhhhhcCCCceEEEEEecCCHHH-HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccC
Q 003450 517 LRRVKKDVMKELPPKKELILRVELSSKQ-KEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (819)
Q Consensus 517 lrr~k~dv~~~lp~~~~~~v~~~ls~~q-~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~ 595 (819)
-.+.+++|+....+...-+...+ .++|+.
T Consensus 436 -----vS~IdElP~GRkpI~T~~i~~~~~~~v~e~--------------------------------------------- 465 (677)
T COG1200 436 -----VSIIDELPPGRKPITTVVIPHERRPEVYER--------------------------------------------- 465 (677)
T ss_pred -----chhhccCCCCCCceEEEEeccccHHHHHHH---------------------------------------------
Confidence 12345788874443333222211 122221
Q ss_pred cHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchh--------HHHHHHHHHhh--CCCeEEEEeccCChHHHHH
Q 003450 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQH--------MLDLLEDYLTF--KKWQYERIDGKVGGAERQI 665 (819)
Q Consensus 596 ~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~--------~ld~L~~~L~~--~g~~~~~l~G~~~~~~R~~ 665 (819)
+.+-..+|+++.+.|.-+. .+..+.+.|.. .++.+..+||.|+.+++++
T Consensus 466 ---------------------i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~ 524 (677)
T COG1200 466 ---------------------IREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDA 524 (677)
T ss_pred ---------------------HHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHH
Confidence 2222235777777766543 23333444432 3778999999999999999
Q ss_pred HHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCC-CCcchHHHHhHhhhhcCCCCc
Q 003450 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNK 726 (819)
Q Consensus 666 ~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~-wnp~~~~Qa~gR~~R~Gq~~~ 726 (819)
++.+|++++.+ +|+||.+..+|||+|+|+.+||.++. +--++.-|-.||++|=+...-
T Consensus 525 vM~~Fk~~e~~---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSy 583 (677)
T COG1200 525 VMEAFKEGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSY 583 (677)
T ss_pred HHHHHHcCCCc---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceE
Confidence 99999887655 89999999999999999999999984 888999999999999655443
No 67
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=1.8e-19 Score=207.42 Aligned_cols=118 Identities=19% Similarity=0.164 Sum_probs=103.7
Q ss_pred hcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEecc
Q 003450 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (819)
Q Consensus 605 ~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st 684 (819)
....|...|.+.+......+.++||||......+.|...|...|+++..++|.+...++..+...+.. + .++|+|
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~---g--~VlIAT 483 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK---G--AVTVAT 483 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC---C--eEEEEc
Confidence 34568888999888877789999999999999999999999999999999999888877776666643 2 379999
Q ss_pred ccccccCCc---ccCC-----EEEEeCCCCCcchHHHHhHhhhhcCCCCcE
Q 003450 685 RAGGLGINL---ATAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (819)
Q Consensus 685 ~a~~~GinL---~~a~-----~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V 727 (819)
+.+|+|+|+ +.+. +||.+|.|-|+..+.|+.||++|.|.....
T Consensus 484 dmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s 534 (790)
T PRK09200 484 NMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSS 534 (790)
T ss_pred cchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeE
Confidence 999999999 5777 999999999999999999999999987654
No 68
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=2.3e-20 Score=194.60 Aligned_cols=320 Identities=16% Similarity=0.270 Sum_probs=214.4
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHH-HHHHHHHHhcCCC----CceEEEecCc-ch---HHHHHHHHHH
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERI----SPHLVVAPLS-TL---RNWEREFATW 355 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~-~i~~l~~l~~~~~----~~~LIv~P~~-ll---~qW~~e~~~~ 355 (819)
.+.|.|...+--. ..|+..+-+..||+|||.. ++-++..|+.... .++||+||+- |. .+-.+.+..|
T Consensus 203 ~PTpIQ~a~IPva----llgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqF 278 (691)
T KOG0338|consen 203 KPTPIQVATIPVA----LLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQF 278 (691)
T ss_pred CCCchhhhcccHH----hhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 4677888776532 4578888899999999977 4455666655432 2899999973 33 3455667777
Q ss_pred cCCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccc---cCCccceEE
Q 003450 356 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS---LKPIKWQCM 432 (819)
Q Consensus 356 ~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~---l~~~~~~~l 432 (819)
+ ++.+....|+-+.+..-..+ ...+||||+|++.+...... |..-...++
T Consensus 279 t-~I~~~L~vGGL~lk~QE~~L--------------------------Rs~PDIVIATPGRlIDHlrNs~sf~ldsiEVL 331 (691)
T KOG0338|consen 279 T-DITVGLAVGGLDLKAQEAVL--------------------------RSRPDIVIATPGRLIDHLRNSPSFNLDSIEVL 331 (691)
T ss_pred c-cceeeeeecCccHHHHHHHH--------------------------hhCCCEEEecchhHHHHhccCCCccccceeEE
Confidence 7 79999999998877543332 24789999999999765433 333356689
Q ss_pred EecccccccCcc-cHHHHHHHhccc--CcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHH
Q 003450 433 IVDEGHRLKNKD-SKLFSSLKQYST--RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (819)
Q Consensus 433 IvDEaH~~kn~~-s~~~~~l~~l~~--~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~ 509 (819)
|+|||+|+...+ ....+.+..+.+ +..+|.|||- ...+.||.++
T Consensus 332 vlDEADRMLeegFademnEii~lcpk~RQTmLFSATM-teeVkdL~sl-------------------------------- 378 (691)
T KOG0338|consen 332 VLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATM-TEEVKDLASL-------------------------------- 378 (691)
T ss_pred EechHHHHHHHHHHHHHHHHHHhccccccceeehhhh-HHHHHHHHHh--------------------------------
Confidence 999999986433 122333444433 3458999993 1111111111
Q ss_pred HHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCC
Q 003450 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (819)
Q Consensus 510 ~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~ 589 (819)
.| +...-+++..+..- ...+..-+.++|- .
T Consensus 379 -----------------SL--~kPvrifvd~~~~~---------------------a~~LtQEFiRIR~---------~- 408 (691)
T KOG0338|consen 379 -----------------SL--NKPVRIFVDPNKDT---------------------APKLTQEFIRIRP---------K- 408 (691)
T ss_pred -----------------hc--CCCeEEEeCCcccc---------------------chhhhHHHheecc---------c-
Confidence 11 11111222211100 0000000000000 0
Q ss_pred CCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHH
Q 003450 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (819)
Q Consensus 590 ~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~ 669 (819)
....+-.+|..++..+. ..+++||.+.......|.-.|...|+++.-++|+.++.+|-+.+..
T Consensus 409 ---------------re~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~k 471 (691)
T KOG0338|consen 409 ---------------REGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEK 471 (691)
T ss_pred ---------------cccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHH
Confidence 01223345555665554 5689999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCC-cEEEEEEEeCCCHHHHHH
Q 003450 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN-KVMIFRLITRGSIEERMM 743 (819)
Q Consensus 670 F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~-~V~v~~li~~~TvEe~i~ 743 (819)
|.+..-+ +||+|+.+++|||+.++.+||+|+.|-+...|++|.||..|.|... .|. |+.++ |..|+
T Consensus 472 Fk~~eid---vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVt---lvgE~--dRkll 538 (691)
T KOG0338|consen 472 FKKEEID---VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVT---LVGES--DRKLL 538 (691)
T ss_pred HHhccCC---EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEE---Eeccc--cHHHH
Confidence 9876544 8999999999999999999999999999999999999999999753 343 45554 44444
No 69
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=2.1e-19 Score=180.07 Aligned_cols=307 Identities=17% Similarity=0.227 Sum_probs=213.6
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHH-HHHHHHHHhcCCCC-ceEEEecC-cchHHHHHHHHHHcC--CC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERIS-PHLVVAPL-STLRNWEREFATWAP--QM 359 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~-~i~~l~~l~~~~~~-~~LIv~P~-~ll~qW~~e~~~~~p--~~ 359 (819)
+..|.|..++..+ ..|++||=++-||+|||.. ++-++..+.+...+ -.||++|+ .+..|-.+.|.-... ++
T Consensus 29 ~pTpiQ~~cIpkI----LeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 29 KPTPIQQACIPKI----LEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCchHhhhhHHH----hcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 5778999999877 7899999999999999977 45555556555555 67999997 555666666655542 67
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhccc-ccC-----CccceEEE
Q 003450 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-SLK-----PIKWQCMI 433 (819)
Q Consensus 360 ~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~-~l~-----~~~~~~lI 433 (819)
++.+++|..+.-..... -..++|+|++|++.+..... .+. .-+..++|
T Consensus 105 K~~vivGG~d~i~qa~~--------------------------L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 105 KVSVIVGGTDMIMQAAI--------------------------LSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred eEEEEEccHHHhhhhhh--------------------------cccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 88888888765432222 12478999999998864321 111 12446899
Q ss_pred ecccccccCcc-cH-HHHHHHhccc-CcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHH
Q 003450 434 VDEGHRLKNKD-SK-LFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (819)
Q Consensus 434 vDEaH~~kn~~-s~-~~~~l~~l~~-~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~ 510 (819)
+|||.++.+.. .. +......++. +.-+++|||- .+++.+++.
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATi-td~i~ql~~---------------------------------- 203 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATI-TDTIKQLFG---------------------------------- 203 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCccceEEEEeeh-hhHHHHhhc----------------------------------
Confidence 99999986532 11 1122222333 3568888883 112111111
Q ss_pred HHhhHHHHHhhhhhhhcCCCce--EEEEE-ecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccC
Q 003450 511 MLAPHLLRRVKKDVMKELPPKK--ELILR-VELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (819)
Q Consensus 511 ~l~~~~lrr~k~dv~~~lp~~~--~~~v~-~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~ 587 (819)
.|-.. -+.+. .+-.+....+|..
T Consensus 204 -----------------~~i~k~~a~~~e~~~~vstvetL~q~------------------------------------- 229 (442)
T KOG0340|consen 204 -----------------CPITKSIAFELEVIDGVSTVETLYQG------------------------------------- 229 (442)
T ss_pred -----------------CCcccccceEEeccCCCCchhhhhhh-------------------------------------
Confidence 00000 00000 0000000001100
Q ss_pred CCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHh-cCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHH
Q 003450 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKE-QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (819)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~-~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~ 666 (819)
..++...+|-..|..+|....+ ....++||.|.+....+|.-.|...++.+..+++.+++.+|-.+
T Consensus 230 -------------yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~a 296 (442)
T KOG0340|consen 230 -------------YILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAA 296 (442)
T ss_pred -------------eeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHH
Confidence 0112345677889999988877 56789999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCc
Q 003450 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNK 726 (819)
Q Consensus 667 i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 726 (819)
+.+|+++. ..+|++|+++++|+|++.++.||++|.|-.|..|++|.||..|.|....
T Consensus 297 LsrFrs~~---~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 297 LSRFRSNA---ARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred HHHHhhcC---ccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcc
Confidence 99997644 3489999999999999999999999999999999999999999988754
No 70
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.85 E-value=7.9e-20 Score=209.18 Aligned_cols=323 Identities=20% Similarity=0.179 Sum_probs=215.8
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHH-HHHHHhcCC-C----C-ceEEEecC-cchHHHHHHHHHH
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGER-I----S-PHLVVAPL-STLRNWEREFATW 355 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~-~l~~l~~~~-~----~-~~LIv~P~-~ll~qW~~e~~~~ 355 (819)
.+|+|.|..++..+ ..|.++++..+||+|||..|+. ++..+...+ . + .+|-|+|. .|...-.+.+..|
T Consensus 21 ~~~t~~Q~~a~~~i----~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEI----HSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHH----hCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 46999999999877 7899999999999999999755 455555552 1 1 58999996 5445566666655
Q ss_pred c--CCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc------ccccCCc
Q 003450 356 A--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD------SASLKPI 427 (819)
Q Consensus 356 ~--p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~------~~~l~~~ 427 (819)
. -++.+-+-+|+.......+ .....+||+|||++++... ...|.
T Consensus 97 ~~~~G~~v~vRhGDT~~~er~r--------------------------~~~~PPdILiTTPEsL~lll~~~~~r~~l~-- 148 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSEKQK--------------------------MLKNPPHILITTPESLAILLNSPKFRELLR-- 148 (814)
T ss_pred HHHcCCccceecCCCChHHhhh--------------------------ccCCCCcEEEeChhHHHHHhcCHHHHHHhc--
Confidence 4 2677777777765543222 2345789999999998643 22333
Q ss_pred cceEEEecccccccCcc--cHHHHHHHhc---c-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccch
Q 003450 428 KWQCMIVDEGHRLKNKD--SKLFSSLKQY---S-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQ 501 (819)
Q Consensus 428 ~~~~lIvDEaH~~kn~~--s~~~~~l~~l---~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~ 501 (819)
+..+|||||.|.+.+.. ..++-.+..+ . .-.|++||||- .++. ....||.+...
T Consensus 149 ~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV--~~~~---~varfL~g~~~--------------- 208 (814)
T COG1201 149 DVRYVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATV--GPPE---EVAKFLVGFGD--------------- 208 (814)
T ss_pred CCcEEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhcc--CCHH---HHHHHhcCCCC---------------
Confidence 34579999999997643 4555555544 3 34689999994 1222 22222222110
Q ss_pred HHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcC
Q 003450 502 EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (819)
Q Consensus 502 ~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~ 581 (819)
.-.-+......+.+..+.++-.....
T Consensus 209 ------------------~~~Iv~~~~~k~~~i~v~~p~~~~~~------------------------------------ 234 (814)
T COG1201 209 ------------------PCEIVDVSAAKKLEIKVISPVEDLIY------------------------------------ 234 (814)
T ss_pred ------------------ceEEEEcccCCcceEEEEecCCcccc------------------------------------
Confidence 00000001111111111111000000
Q ss_pred CCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCC-CeEEEEeccCCh
Q 003450 582 HPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKK-WQYERIDGKVGG 660 (819)
Q Consensus 582 hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g-~~~~~l~G~~~~ 660 (819)
...-...+.+.+..+.++...+|||++.+.+.+.+...|...+ .++..-||+.+.
T Consensus 235 ------------------------~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSr 290 (814)
T COG1201 235 ------------------------DEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSR 290 (814)
T ss_pred ------------------------ccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccH
Confidence 0011122334444455556699999999999999999998876 899999999999
Q ss_pred HHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhh-hhcCCCCcEEEEEEEeCCCHH
Q 003450 661 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARA-HRLGQTNKVMIFRLITRGSIE 739 (819)
Q Consensus 661 ~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~-~R~Gq~~~V~v~~li~~~TvE 739 (819)
++|..+-++|.++. ...++||.+...|||+-.+|.||.|.+|-+-...+||+||+ ||+|....- ++++.+ .+
T Consensus 291 e~R~~vE~~lk~G~---lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg---~ii~~~-r~ 363 (814)
T COG1201 291 ELRLEVEERLKEGE---LKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKG---IIIAED-RD 363 (814)
T ss_pred HHHHHHHHHHhcCC---ceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccE---EEEecC-HH
Confidence 99999999998765 34799999999999999999999999999999999999999 667765443 344444 44
Q ss_pred HHHH
Q 003450 740 ERMM 743 (819)
Q Consensus 740 e~i~ 743 (819)
+.+-
T Consensus 364 dllE 367 (814)
T COG1201 364 DLLE 367 (814)
T ss_pred HHHH
Confidence 4443
No 71
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.85 E-value=1.6e-20 Score=212.51 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=106.0
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
...|...+.+.+....+.|.++||||+.....+.|.+.|...|+++..++|. +.+|+..+..|..... .++|+|+
T Consensus 387 ~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g---~VtIATn 461 (745)
T TIGR00963 387 EEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKG---AVTIATN 461 (745)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCc---eEEEEec
Confidence 3458888888888888899999999999999999999999999999999998 7789999999965443 4899999
Q ss_pred cccccCCccc-------CCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEE
Q 003450 686 AGGLGINLAT-------ADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (819)
Q Consensus 686 a~~~GinL~~-------a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v 729 (819)
.+|+|+|+.. .-+||.++.+-|+..+.|+.||++|.|.......
T Consensus 462 mAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 462 MAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred cccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 9999999988 5699999999999999999999999999865543
No 72
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=4.3e-19 Score=200.04 Aligned_cols=131 Identities=18% Similarity=0.226 Sum_probs=106.5
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
...|...|.+++..+...+.++|||++.....+.|...|...|+++..++|... +|+..+..|...... ++|+|+
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~---VlVATd 529 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR---ITVATN 529 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc---EEEEcc
Confidence 456889999999887777889999999999999999999999999999999854 556666666543332 799999
Q ss_pred cccccCCcc---cCC-----EEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHH
Q 003450 686 AGGLGINLA---TAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (819)
Q Consensus 686 a~~~GinL~---~a~-----~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~ 746 (819)
.+|+|+|+. .+. +||.+|.|-|...|.|++||++|.|....+.. |+ |.|+.++...
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~--~i---s~eD~l~~~~ 593 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEA--IL---SLEDDLLQSF 593 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEE--Ee---chhHHHHHhh
Confidence 999999998 444 99999999999999999999999997754432 22 4466666543
No 73
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.85 E-value=1.4e-19 Score=199.98 Aligned_cols=304 Identities=19% Similarity=0.210 Sum_probs=212.8
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEE
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~ 362 (819)
..+||-|.++++.+ ..++++|...+||.||++..- +-++.. .|.+|||.|. +|+....+.+.... +.+.
T Consensus 16 ~~FR~gQ~evI~~~----l~g~d~lvvmPTGgGKSlCyQ--iPAll~--~G~TLVVSPLiSLM~DQV~~l~~~G--i~A~ 85 (590)
T COG0514 16 ASFRPGQQEIIDAL----LSGKDTLVVMPTGGGKSLCYQ--IPALLL--EGLTLVVSPLISLMKDQVDQLEAAG--IRAA 85 (590)
T ss_pred cccCCCHHHHHHHH----HcCCcEEEEccCCCCcchHhh--hHHHhc--CCCEEEECchHHHHHHHHHHHHHcC--ceee
Confidence 35899999999877 677999999999999997642 222222 4599999995 88888898888754 5555
Q ss_pred EEecC--hhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--ccccCCccceEEEecccc
Q 003450 363 MYVGT--SQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGH 438 (819)
Q Consensus 363 ~~~g~--~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~lIvDEaH 438 (819)
.+.++ ..++..+... ......+++..+++.+... .+.+...+..+++|||||
T Consensus 86 ~lnS~l~~~e~~~v~~~------------------------l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAH 141 (590)
T COG0514 86 YLNSTLSREERQQVLNQ------------------------LKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAH 141 (590)
T ss_pred hhhcccCHHHHHHHHHH------------------------HhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHH
Confidence 55544 2233222221 1124578999999999754 455667788999999999
Q ss_pred cccC-------cccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHH
Q 003450 439 RLKN-------KDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (819)
Q Consensus 439 ~~kn-------~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~ 511 (819)
-+-. ....+......+...-++.||||--..--.|+...|..-.+..|...
T Consensus 142 CiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s---------------------- 199 (590)
T COG0514 142 CISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGS---------------------- 199 (590)
T ss_pred HHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec----------------------
Confidence 8743 23445555555666688999999644444444444443333221100
Q ss_pred HhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCC
Q 003450 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (819)
Q Consensus 512 l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~ 591 (819)
..- . |+....+.
T Consensus 200 --------------------------fdR--------------------------p---Ni~~~v~~------------- 211 (590)
T COG0514 200 --------------------------FDR--------------------------P---NLALKVVE------------- 211 (590)
T ss_pred --------------------------CCC--------------------------c---hhhhhhhh-------------
Confidence 000 0 00000000
Q ss_pred CccCcHHHHHHhhhcCchHHHHHHHHH-HHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHh
Q 003450 592 DIEDTNESFKQLLESSGKLQLLDKMMV-KLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRF 670 (819)
Q Consensus 592 ~~~~~~~~~~~l~~~s~Kl~~l~~ll~-~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F 670 (819)
..+++.+.. .+. .....+...||||..+...+.+.+.|...|++...+||+++.++|+...++|
T Consensus 212 -------------~~~~~~q~~--fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f 276 (590)
T COG0514 212 -------------KGEPSDQLA--FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAF 276 (590)
T ss_pred -------------cccHHHHHH--HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHH
Confidence 001111111 111 1123355689999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEE
Q 003450 671 NAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (819)
Q Consensus 671 ~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v 729 (819)
..++.. ++|+|.|.|.|||=+++..|||||+|-+...|.|-+|||+|-|....+.+
T Consensus 277 ~~~~~~---iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~ail 332 (590)
T COG0514 277 LNDEIK---VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAIL 332 (590)
T ss_pred hcCCCc---EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEE
Confidence 876554 89999999999999999999999999999999999999999998776543
No 74
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.85 E-value=2.6e-20 Score=198.88 Aligned_cols=311 Identities=16% Similarity=0.214 Sum_probs=217.5
Q ss_pred CchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhcCC-CCceEEEecC-cchHHHHHHHHHHcC---CC
Q 003450 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGER-ISPHLVVAPL-STLRNWEREFATWAP---QM 359 (819)
Q Consensus 286 L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~-i~~l~~l~~~~-~~~~LIv~P~-~ll~qW~~e~~~~~p---~~ 359 (819)
..+.|..|+-.+ ..+-..|+..-.|+|||++. ++++..+..+. .-..+||+|+ .+.-|-...+...+| ++
T Consensus 48 ptkiQaaAIP~~----~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~ 123 (980)
T KOG4284|consen 48 PTKIQAAAIPAI----FSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGA 123 (980)
T ss_pred CCchhhhhhhhh----hcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCc
Confidence 456788887754 45668999999999999874 33444443322 2378999997 556788888888876 78
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--ccccCCccceEEEeccc
Q 003450 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEG 437 (819)
Q Consensus 360 ~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~lIvDEa 437 (819)
.+.+|.|+..-.....++ .+.+|+|.|++.+... ...+..-+.+++|+|||
T Consensus 124 ~csvfIGGT~~~~d~~rl---------------------------k~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEA 176 (980)
T KOG4284|consen 124 RCSVFIGGTAHKLDLIRL---------------------------KQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEA 176 (980)
T ss_pred ceEEEecCchhhhhhhhh---------------------------hhceEEecCchHHHHHHHhcCCCccceeEEEeccH
Confidence 899999987665433332 3567999999998753 45566678899999999
Q ss_pred ccccCccc---HHHHHHHhcc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHh
Q 003450 438 HRLKNKDS---KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (819)
Q Consensus 438 H~~kn~~s---~~~~~l~~l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~ 513 (819)
+.+-...+ .+...+..++ .+..+..|||=-+| + -..|.+.++
T Consensus 177 DkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~n-L---------------------------------dn~Lsk~mr 222 (980)
T KOG4284|consen 177 DKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRN-L---------------------------------DNLLSKFMR 222 (980)
T ss_pred HhhhchhhHHHHHHHHHHhcchhheeeEEeccCchh-H---------------------------------HHHHHHHhc
Confidence 99965443 4455566664 45678899993111 0 111222222
Q ss_pred hHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCc
Q 003450 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (819)
Q Consensus 514 ~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~ 593 (819)
.-++-|..++...-+.-+.++...+......+
T Consensus 223 dp~lVr~n~~d~~L~GikQyv~~~~s~nnsve------------------------------------------------ 254 (980)
T KOG4284|consen 223 DPALVRFNADDVQLFGIKQYVVAKCSPNNSVE------------------------------------------------ 254 (980)
T ss_pred ccceeecccCCceeechhheeeeccCCcchHH------------------------------------------------
Confidence 22222222211111111222222121111000
Q ss_pred cCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCC
Q 003450 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (819)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~ 673 (819)
..--|++.|.+++..+. -.+.||||....-++-+.++|...|+++..+.|.|++.+|..+++.+++.
T Consensus 255 -----------emrlklq~L~~vf~~ip--y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f 321 (980)
T KOG4284|consen 255 -----------EMRLKLQKLTHVFKSIP--YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAF 321 (980)
T ss_pred -----------HHHHHHHHHHHHHhhCc--hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhc
Confidence 01126666666666654 34789999999999999999999999999999999999999999999653
Q ss_pred CCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCC
Q 003450 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (819)
Q Consensus 674 ~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~ 725 (819)
...+||||+..++|||-..++.||.+|+|-+-..|.+||||++|.|...
T Consensus 322 ---~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G 370 (980)
T KOG4284|consen 322 ---RVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG 370 (980)
T ss_pred ---eEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccc
Confidence 4568999999999999999999999999999999999999999999865
No 75
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.84 E-value=3e-19 Score=208.24 Aligned_cols=361 Identities=16% Similarity=0.142 Sum_probs=201.0
Q ss_pred CCCchhHHHHHHHHHHhhcC------CCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEecC-cchHHHHHHHHHH
Q 003450 284 GSLHPYQLEGLNFLRFSWSK------QTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPL-STLRNWEREFATW 355 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~------~~~~iLade~GlGKT~~~i~~l~~l~~~~-~~~~LIv~P~-~ll~qW~~e~~~~ 355 (819)
.-.|+||..|++.+...... .+++++.+.+|+|||++++.++..+.... ..++|||||. .|..||.++|..+
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 44899999999998776654 46899999999999999999888876433 3489999995 8889999999998
Q ss_pred cCCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc-cccCCc----cce
Q 003450 356 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS-ASLKPI----KWQ 430 (819)
Q Consensus 356 ~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~-~~l~~~----~~~ 430 (819)
.++... -.++ ...+... .......|+|+|.+++.... ..+..+ ...
T Consensus 317 ~~~~~~--~~~s---~~~L~~~------------------------l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~ 367 (667)
T TIGR00348 317 QKDCAE--RIES---IAELKRL------------------------LEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEV 367 (667)
T ss_pred CCCCCc--ccCC---HHHHHHH------------------------HhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCE
Confidence 753110 0111 1111110 00124579999999997521 111111 123
Q ss_pred EEEecccccccCcccHHHHHHH-hcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHH
Q 003450 431 CMIVDEGHRLKNKDSKLFSSLK-QYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (819)
Q Consensus 431 ~lIvDEaH~~kn~~s~~~~~l~-~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~ 509 (819)
+||+|||||... ......+. .++...+++|||||+...-.+-+..+... ++ ..
T Consensus 368 lvIvDEaHrs~~--~~~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~----fg----------~~---------- 421 (667)
T TIGR00348 368 VVIFDEAHRSQY--GELAKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYV----FG----------RY---------- 421 (667)
T ss_pred EEEEEcCccccc--hHHHHHHHhhCCCCcEEEEeCCCcccccccccccccCC----CC----------Ce----------
Confidence 899999999742 23444553 56778999999999754211111111000 00 00
Q ss_pred HHHhhHHHHHhhhhhhhc-CCCceEEEEEec--CCHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHhcCCCc
Q 003450 510 RMLAPHLLRRVKKDVMKE-LPPKKELILRVE--LSSKQKEYYKAILTRNYQILTRRGGA--QISLINVVMELRKLCCHPY 584 (819)
Q Consensus 510 ~~l~~~~lrr~k~dv~~~-lp~~~~~~v~~~--ls~~q~~~y~~i~~~~~~~l~~~~~~--~~~~~~~~~~lr~~~~hp~ 584 (819)
+..|-+ +..+... +.+..+..+.++ ++... .+................ ...+......+..
T Consensus 422 --i~~Y~~---~~AI~dG~~~~i~Y~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 487 (667)
T TIGR00348 422 --LHRYFI---TDAIRDGLTVKIDYEDRLPEDHLDRKK---LDAFFDEIFELLPERIREITKESLKEKLQKTKK------ 487 (667)
T ss_pred --EEEeeH---HHHhhcCCeeeEEEEecchhhccChHH---HHHHHHHHHHhhhccccHHHHHHHHHHHHHHHh------
Confidence 000000 0011111 122222222221 11111 111111100000000000 0001111111111
Q ss_pred ccCCCCCCccCcHHHHHHhhhcCchHHHHHH-HHHHH---H-hcCceEEEEecchhHHHHHHHHHhhC-----CCeEEEE
Q 003450 585 MLEGVEPDIEDTNESFKQLLESSGKLQLLDK-MMVKL---K-EQGHRVLIYSQFQHMLDLLEDYLTFK-----KWQYERI 654 (819)
Q Consensus 585 l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~-ll~~l---~-~~g~kvlIFs~~~~~ld~L~~~L~~~-----g~~~~~l 654 (819)
++.....+..+.+ ++..+ . ..+.|.+|||.++..+..+.+.|... +.....+
T Consensus 488 ------------------~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~ 549 (667)
T TIGR00348 488 ------------------ILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVM 549 (667)
T ss_pred ------------------hhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEe
Confidence 1111112222222 22222 1 22579999999999988888777543 3455667
Q ss_pred eccCChH---------------------HHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHH
Q 003450 655 DGKVGGA---------------------ERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQ 713 (819)
Q Consensus 655 ~G~~~~~---------------------~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Q 713 (819)
+|+...+ ....++++|.+++ .+.+||+++...+|+|.|.++++++.-|--+ ..++|
T Consensus 550 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~--~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQ 626 (667)
T TIGR00348 550 TGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEE--NPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQ 626 (667)
T ss_pred cCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCC--CceEEEEEcccccccCCCccceEEEeccccc-cHHHH
Confidence 7664432 2347899997642 3457888899999999999999999888665 56899
Q ss_pred HhHhhhhc-CCCC-cEEEEEEEe
Q 003450 714 AMARAHRL-GQTN-KVMIFRLIT 734 (819)
Q Consensus 714 a~gR~~R~-Gq~~-~V~v~~li~ 734 (819)
++||+.|+ +..| ...|+.++.
T Consensus 627 ai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 627 AIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred HHHHhccccCCCCCCEEEEECcC
Confidence 99999995 5444 467777764
No 76
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.84 E-value=4.3e-20 Score=205.19 Aligned_cols=347 Identities=16% Similarity=0.190 Sum_probs=220.7
Q ss_pred CCCCCCchhHHHHHHHHHHhhcCCC-ceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEec-CcchHHHHHHHHHHcC
Q 003450 281 LSGGSLHPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWEREFATWAP 357 (819)
Q Consensus 281 ~~~~~L~~~Q~~~v~~l~~~~~~~~-~~iLade~GlGKT~~~i~~l~~l~~~~-~~~~LIv~P-~~ll~qW~~e~~~~~p 357 (819)
.....+|+||..|++.+...+.+|+ +++|++.||+|||.+|++++..|.+.+ .+++|+++. ++|+.|-..+|..+.|
T Consensus 161 ~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P 240 (875)
T COG4096 161 DSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLP 240 (875)
T ss_pred cccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCC
Confidence 3446799999999999988888765 699999999999999999999998765 469999999 6888999999999999
Q ss_pred CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc-------cccCCccce
Q 003450 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS-------ASLKPIKWQ 430 (819)
Q Consensus 358 ~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~-------~~l~~~~~~ 430 (819)
+.....+...... ...+.|.++||+++.... ..+..-.||
T Consensus 241 ~~~~~n~i~~~~~---------------------------------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FD 287 (875)
T COG4096 241 FGTKMNKIEDKKG---------------------------------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFD 287 (875)
T ss_pred CccceeeeecccC---------------------------------CcceeEEEeehHHHHhhhhccccccccCCCCcee
Confidence 7666554332211 125789999999997532 223344699
Q ss_pred EEEecccccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHH
Q 003450 431 CMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (819)
Q Consensus 431 ~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~ 510 (819)
+||||||||- ....++.+..+-...+++|||||-..--..-|.+++ =.|- ..-.|..
T Consensus 288 lIvIDEaHRg---i~~~~~~I~dYFdA~~~gLTATP~~~~d~~T~~~F~-g~Pt-------------------~~Yslee 344 (875)
T COG4096 288 LIVIDEAHRG---IYSEWSSILDYFDAATQGLTATPKETIDRSTYGFFN-GEPT-------------------YAYSLEE 344 (875)
T ss_pred EEEechhhhh---HHhhhHHHHHHHHHHHHhhccCcccccccccccccC-CCcc-------------------eeecHHH
Confidence 9999999995 223334444444556778899995422111222221 0000 0000111
Q ss_pred HHhhHHHHHhhhhhhhcCCCceEEEEEecCCH---------HHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcC
Q 003450 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSS---------KQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (819)
Q Consensus 511 ~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~---------~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~ 581 (819)
.+... .|-|+....+.....- ++.+.+.+.+
T Consensus 345 AV~DG-----------fLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i----------------------------- 384 (875)
T COG4096 345 AVEDG-----------FLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAI----------------------------- 384 (875)
T ss_pred Hhhcc-----------ccCCCCceEEeeeccccCcCcCccchhhhhhcccc-----------------------------
Confidence 11111 1223333333222110 0111111000
Q ss_pred CCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhc---C---ceEEEEecchhHHHHHHHHHhhC-----CCe
Q 003450 582 HPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQ---G---HRVLIYSQFQHMLDLLEDYLTFK-----KWQ 650 (819)
Q Consensus 582 hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~---g---~kvlIFs~~~~~ld~L~~~L~~~-----g~~ 650 (819)
.. ++.......+...+.-..-.+.+...+.....+ | .|+||||....+++.|...|... |-=
T Consensus 385 -----~~--dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~ 457 (875)
T COG4096 385 -----DE--DDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRY 457 (875)
T ss_pred -----Cc--ccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCce
Confidence 00 000000000000111122334455555554444 3 49999999999999999999643 333
Q ss_pred EEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcC-------C
Q 003450 651 YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG-------Q 723 (819)
Q Consensus 651 ~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~G-------q 723 (819)
+..++|.. ++-+..|+.|-. ....-.+.++.+.+.+|||.+.+-.++|+-.-.+...+.|.+||.-|+. |
T Consensus 458 a~~IT~d~--~~~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~ 534 (875)
T COG4096 458 AMKITGDA--EQAQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQ 534 (875)
T ss_pred EEEEeccc--hhhHHHHHHHHh-cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccc
Confidence 56788864 455778888876 3334457999999999999999999999999999999999999999973 4
Q ss_pred CC-cEEEEEEE
Q 003450 724 TN-KVMIFRLI 733 (819)
Q Consensus 724 ~~-~V~v~~li 733 (819)
.| ...|+.+.
T Consensus 535 dK~~F~ifDf~ 545 (875)
T COG4096 535 DKEFFTIFDFV 545 (875)
T ss_pred cceeEEEEEhh
Confidence 44 35677665
No 77
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=2.2e-19 Score=188.52 Aligned_cols=335 Identities=15% Similarity=0.258 Sum_probs=198.0
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-------CCC-ceEEEecC-cchHHHHHHHHHH
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-------RIS-PHLVVAPL-STLRNWEREFATW 355 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~-------~~~-~~LIv~P~-~ll~qW~~e~~~~ 355 (819)
.+..-|..++--+ ..++.+++-..||+|||+..+.-+...+.. ..| -.||+||+ .|..|-.+.+.+.
T Consensus 159 ~pTsVQkq~IP~l----L~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKL 234 (708)
T KOG0348|consen 159 APTSVQKQAIPVL----LEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKL 234 (708)
T ss_pred ccchHhhcchhhh----hcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHH
Confidence 3555677777766 459999999999999999977665554321 123 46999997 7778888888887
Q ss_pred cCCCeEEE---EecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCc---cc
Q 003450 356 APQMNVVM---YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI---KW 429 (819)
Q Consensus 356 ~p~~~v~~---~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~---~~ 429 (819)
...+.+++ ..|+...+..-.+ -..+.+|+|.|++.+......-..+ ..
T Consensus 235 l~~~hWIVPg~lmGGEkkKSEKAR--------------------------LRKGiNILIgTPGRLvDHLknT~~i~~s~L 288 (708)
T KOG0348|consen 235 LKPFHWIVPGVLMGGEKKKSEKAR--------------------------LRKGINILIGTPGRLVDHLKNTKSIKFSRL 288 (708)
T ss_pred hcCceEEeeceeecccccccHHHH--------------------------HhcCceEEEcCchHHHHHHhccchheeeee
Confidence 65444443 2333221111000 1236789999999998665444444 34
Q ss_pred eEEEecccccccC--cc---cHHHHHHHhcc---c--------CcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHH
Q 003450 430 QCMIVDEGHRLKN--KD---SKLFSSLKQYS---T--------RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQ 493 (819)
Q Consensus 430 ~~lIvDEaH~~kn--~~---s~~~~~l~~l~---~--------~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~ 493 (819)
.+||+|||+++.. .. +++.+++...+ + ...+|||||--
T Consensus 289 RwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLt-------------------------- 342 (708)
T KOG0348|consen 289 RWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLT-------------------------- 342 (708)
T ss_pred eEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhH--------------------------
Confidence 5799999999843 22 33444443221 1 12367777731
Q ss_pred HHHhccchHHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHH
Q 003450 494 EEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVV 573 (819)
Q Consensus 494 ~~~~~~~~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~ 573 (819)
+.+.+|..+ .-+....+...-+..|.. ...
T Consensus 343 ---------d~V~rLa~~-----------------sLkDpv~I~ld~s~~~~~------------------------p~~ 372 (708)
T KOG0348|consen 343 ---------DGVNRLADL-----------------SLKDPVYISLDKSHSQLN------------------------PKD 372 (708)
T ss_pred ---------HHHHHHhhc-----------------cccCceeeeccchhhhcC------------------------cch
Confidence 112122111 001111111111111000 000
Q ss_pred HHHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHH--HHHHHHHHHh--cCceEEEEecchhHHHHHHHHH----h
Q 003450 574 MELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQL--LDKMMVKLKE--QGHRVLIYSQFQHMLDLLEDYL----T 645 (819)
Q Consensus 574 ~~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~--l~~ll~~l~~--~g~kvlIFs~~~~~ld~L~~~L----~ 645 (819)
..+...|.-|+- +.. +...-++.......-..+|+.+ |..+|....+ ...|+|||....++++.=.+.| .
T Consensus 373 ~a~~ev~~~~~~-~~l-~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~ 450 (708)
T KOG0348|consen 373 KAVQEVDDGPAG-DKL-DSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALL 450 (708)
T ss_pred hhhhhcCCcccc-ccc-ccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhh
Confidence 000111111110 000 0111111222222233455443 4455544332 2448899987776655444443 2
Q ss_pred h------------------CCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCC
Q 003450 646 F------------------KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWN 707 (819)
Q Consensus 646 ~------------------~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wn 707 (819)
. .+.++.+++|+|++++|..+...|...... +|++|+++++||||+.+..||-||+|.+
T Consensus 451 ~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~---VLLcTDVAaRGLDlP~V~~vVQYd~P~s 527 (708)
T KOG0348|consen 451 SHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRA---VLLCTDVAARGLDLPHVGLVVQYDPPFS 527 (708)
T ss_pred cccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccce---EEEehhhhhccCCCCCcCeEEEeCCCCC
Confidence 2 145699999999999999999999775543 8999999999999999999999999999
Q ss_pred cchHHHHhHhhhhcCCCCcEEEE
Q 003450 708 PHADLQAMARAHRLGQTNKVMIF 730 (819)
Q Consensus 708 p~~~~Qa~gR~~R~Gq~~~V~v~ 730 (819)
+..|++|+||..|+|.+.....|
T Consensus 528 ~adylHRvGRTARaG~kG~alLf 550 (708)
T KOG0348|consen 528 TADYLHRVGRTARAGEKGEALLF 550 (708)
T ss_pred HHHHHHHhhhhhhccCCCceEEE
Confidence 99999999999999998765443
No 78
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.84 E-value=3.1e-19 Score=204.70 Aligned_cols=321 Identities=16% Similarity=0.195 Sum_probs=195.3
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH----------HHHh----cCCCCceEEEecC-cchHH
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL----------ASLF----GERISPHLVVAPL-STLRN 347 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l----------~~l~----~~~~~~~LIv~P~-~ll~q 347 (819)
..+|++.|.+.-..+...+..++.+|+.++||+|||.+.--++ ..+. ....++++|++|. .++.|
T Consensus 158 ~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~q 237 (675)
T PHA02653 158 KIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRL 237 (675)
T ss_pred cccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHH
Confidence 3679999988888888888999999999999999998742222 1111 1123489999996 56667
Q ss_pred HHHHHHHHc-----CCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhccc
Q 003450 348 WEREFATWA-----PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA 422 (819)
Q Consensus 348 W~~e~~~~~-----p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~ 422 (819)
...++.+.. ++..+.+.+|+..... ... .....++++.|+.... .
T Consensus 238 i~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~-~~t--------------------------~~k~~~Ilv~T~~L~l---~ 287 (675)
T PHA02653 238 HSITLLKSLGFDEIDGSPISLKYGSIPDEL-INT--------------------------NPKPYGLVFSTHKLTL---N 287 (675)
T ss_pred HHHHHHHHhCccccCCceEEEEECCcchHH-hhc--------------------------ccCCCCEEEEeCcccc---c
Confidence 777776533 3455666677654211 000 0114578888865311 1
Q ss_pred ccCCccceEEEecccccccCcccHHHHHHHhcc--cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccc
Q 003450 423 SLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN 500 (819)
Q Consensus 423 ~l~~~~~~~lIvDEaH~~kn~~s~~~~~l~~l~--~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~ 500 (819)
. -.++++||+||||..-.........+..+. .+..+++|||.-. +...+- .|+..
T Consensus 288 ~--L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~rq~ILmSATl~~-dv~~l~---~~~~~----------------- 344 (675)
T PHA02653 288 K--LFDYGTVIIDEVHEHDQIGDIIIAVARKHIDKIRSLFLMTATLED-DRDRIK---EFFPN----------------- 344 (675)
T ss_pred c--cccCCEEEccccccCccchhHHHHHHHHhhhhcCEEEEEccCCcH-hHHHHH---HHhcC-----------------
Confidence 1 235779999999998554433433343332 2357999999621 111110 11100
Q ss_pred hHHHHHHHHHHHhhHHHHHhhhhhh-hcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHh
Q 003450 501 QEEQISRLHRMLAPHLLRRVKKDVM-KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKL 579 (819)
Q Consensus 501 ~~~~~~~l~~~l~~~~lrr~k~dv~-~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~ 579 (819)
+..+ .+. ..+.+.....+.....+.+...|-.
T Consensus 345 -------------p~~I-----~I~grt~~pV~~~yi~~~~~~~~~~~y~~----------------------------- 377 (675)
T PHA02653 345 -------------PAFV-----HIPGGTLFPISEVYVKNKYNPKNKRAYIE----------------------------- 377 (675)
T ss_pred -------------CcEE-----EeCCCcCCCeEEEEeecCcccccchhhhH-----------------------------
Confidence 0000 000 0011111111111111111110000
Q ss_pred cCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHH-hcCceEEEEecchhHHHHHHHHHhhC--CCeEEEEec
Q 003450 580 CCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK-EQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDG 656 (819)
Q Consensus 580 ~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~-~~g~kvlIFs~~~~~ld~L~~~L~~~--g~~~~~l~G 656 (819)
..|...+ ..+.... ..+.++|||+.....++.+.+.|... ++.+..++|
T Consensus 378 ---------------------------~~k~~~l-~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG 429 (675)
T PHA02653 378 ---------------------------EEKKNIV-TALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHG 429 (675)
T ss_pred ---------------------------HHHHHHH-HHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccC
Confidence 0011111 1222221 24568999999999999999999876 799999999
Q ss_pred cCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeC---CC---------CCcchHHHHhHhhhhcCCC
Q 003450 657 KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYD---SD---------WNPHADLQAMARAHRLGQT 724 (819)
Q Consensus 657 ~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d---~~---------wnp~~~~Qa~gR~~R~Gq~ 724 (819)
++++. ++.+++|.. .+...+|++|+.+++|||++++++||.++ .+ .+...+.||.||++|.
T Consensus 430 ~Lsq~--eq~l~~ff~--~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~--- 502 (675)
T PHA02653 430 KVPNI--DEILEKVYS--SKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV--- 502 (675)
T ss_pred CcCHH--HHHHHHHhc--cCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC---
Confidence 99864 566777742 23445899999999999999999999997 22 2666889999999997
Q ss_pred CcEEEEEEEeCCCH
Q 003450 725 NKVMIFRLITRGSI 738 (819)
Q Consensus 725 ~~V~v~~li~~~Tv 738 (819)
++-.+|+|+++...
T Consensus 503 ~~G~c~rLyt~~~~ 516 (675)
T PHA02653 503 SPGTYVYFYDLDLL 516 (675)
T ss_pred CCCeEEEEECHHHh
Confidence 35678888887764
No 79
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.84 E-value=8.6e-21 Score=191.16 Aligned_cols=341 Identities=18% Similarity=0.291 Sum_probs=223.7
Q ss_pred CCCCcccccccCCCCCCC-----C-CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHH-HHHHHh--------
Q 003450 265 TKKPKEFQQYEHSPEFLS-----G-GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLF-------- 329 (819)
Q Consensus 265 ~~~~~~~~~~~~~p~~~~-----~-~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~-~l~~l~-------- 329 (819)
+++...|...+.+.+.+. | ....|.|.+|+.-+ ..|+..|=..-||+|||++.+. ++...+
T Consensus 166 pPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvv----LsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf 241 (610)
T KOG0341|consen 166 PPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVV----LSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPF 241 (610)
T ss_pred CCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceE----eecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCcc
Confidence 344566666655443321 1 25788999998754 6788888777899999977332 222211
Q ss_pred cCCCCce-EEEecC-cchHHHHHHHHHH--------cCCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccc
Q 003450 330 GERISPH-LVVAPL-STLRNWEREFATW--------APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSE 399 (819)
Q Consensus 330 ~~~~~~~-LIv~P~-~ll~qW~~e~~~~--------~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 399 (819)
..+.+|+ |||||+ .+..|-..-+..+ .|.++...+.|....+..+...
T Consensus 242 ~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v---------------------- 299 (610)
T KOG0341|consen 242 ARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVV---------------------- 299 (610)
T ss_pred ccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHH----------------------
Confidence 1234554 999997 4444544434333 2677777888887777654442
Q ss_pred cccccccccEEEchhhHHhhc--ccccCCccceEEEecccccccC--cccHHHHHHHhcccC-cEEEEeCCCCCCChhHH
Q 003450 400 SKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRLKN--KDSKLFSSLKQYSTR-HRVLLTGTPLQNNLDEL 474 (819)
Q Consensus 400 ~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~lIvDEaH~~kn--~~s~~~~~l~~l~~~-~~llLTgTP~~n~~~el 474 (819)
....+++++|++.+..- ...+..--..++.+|||+|+-. ........+..+++. ..|+.|||-
T Consensus 300 ----~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATM-------- 367 (610)
T KOG0341|consen 300 ----RRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATM-------- 367 (610)
T ss_pred ----hcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccc--------
Confidence 24679999999988642 1111111234799999999854 334454555555544 458889993
Q ss_pred HhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHH
Q 003450 475 FMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTR 554 (819)
Q Consensus 475 ~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~ 554 (819)
| ..++.+. +... +. ..++.|.
T Consensus 368 --------P-------------------~KIQ~FA-----------kSAL---VK---PvtvNVG--------------- 388 (610)
T KOG0341|consen 368 --------P-------------------KKIQNFA-----------KSAL---VK---PVTVNVG--------------- 388 (610)
T ss_pred --------c-------------------HHHHHHH-----------Hhhc---cc---ceEEecc---------------
Confidence 1 0000000 0000 00 1111111
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecch
Q 003450 555 NYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQ 634 (819)
Q Consensus 555 ~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~ 634 (819)
.....-++.+.+ -..+....|+..|.+.|++ ..-+||||+...
T Consensus 389 ---------RAGAAsldViQe-------------------------vEyVkqEaKiVylLeCLQK---T~PpVLIFaEkK 431 (610)
T KOG0341|consen 389 ---------RAGAASLDVIQE-------------------------VEYVKQEAKIVYLLECLQK---TSPPVLIFAEKK 431 (610)
T ss_pred ---------cccccchhHHHH-------------------------HHHHHhhhhhhhHHHHhcc---CCCceEEEeccc
Confidence 000011111111 1123345566666666654 567999999999
Q ss_pred hHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHH
Q 003450 635 HMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQA 714 (819)
Q Consensus 635 ~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa 714 (819)
.-+|-|.+||-.+|.....++|+..+++|..+|+.|+.+..+ +|++|++++-|+|+++..+||+||.|-.-.+|.+|
T Consensus 432 ~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKD---VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHR 508 (610)
T KOG0341|consen 432 ADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKD---VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHR 508 (610)
T ss_pred cChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCc---eEEEecchhccCCCccchhhccCCChHHHHHHHHH
Confidence 999999999999999999999999999999999999987665 89999999999999999999999999999999999
Q ss_pred hHhhhhcCCCCcEEEEEEEeCCCHHHHHHH
Q 003450 715 MARAHRLGQTNKVMIFRLITRGSIEERMMQ 744 (819)
Q Consensus 715 ~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~ 744 (819)
+||.+|-|.+.-.+ .||.+++-|..+++
T Consensus 509 IGRTGRsg~~GiAT--TfINK~~~esvLlD 536 (610)
T KOG0341|consen 509 IGRTGRSGKTGIAT--TFINKNQEESVLLD 536 (610)
T ss_pred hcccCCCCCcceee--eeecccchHHHHHH
Confidence 99999999876433 45667765555543
No 80
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=1.1e-18 Score=182.05 Aligned_cols=319 Identities=18% Similarity=0.283 Sum_probs=220.5
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHH-HHHHhc-----CCCCce-EEEecC-cchHHHHHHHHHHc
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFG-----ERISPH-LVVAPL-STLRNWEREFATWA 356 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~-l~~l~~-----~~~~~~-LIv~P~-~ll~qW~~e~~~~~ 356 (819)
+..|.|-.++.-. ..++.+|=..-+|+|||...+.- +.++.. .+.+|+ ||+||+ .+..|-..|.++|.
T Consensus 245 kptpiq~qalpta----lsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~ 320 (731)
T KOG0339|consen 245 KPTPIQCQALPTA----LSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFG 320 (731)
T ss_pred cCCcccccccccc----cccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhh
Confidence 5677777776533 56778887889999999765443 333322 234566 778896 77788899999885
Q ss_pred --CCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--ccccCCccceEE
Q 003450 357 --PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCM 432 (819)
Q Consensus 357 --p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~l 432 (819)
-+++++..+|....-..+..+. ..+.+||+|++.+... .......+..+|
T Consensus 321 K~ygl~~v~~ygGgsk~eQ~k~Lk--------------------------~g~EivVaTPgRlid~VkmKatn~~rvS~L 374 (731)
T KOG0339|consen 321 KAYGLRVVAVYGGGSKWEQSKELK--------------------------EGAEIVVATPGRLIDMVKMKATNLSRVSYL 374 (731)
T ss_pred hhccceEEEeecCCcHHHHHHhhh--------------------------cCCeEEEechHHHHHHHHhhcccceeeeEE
Confidence 3788888888776665555431 4678999999998643 222333466799
Q ss_pred EecccccccC--cccHHHHHHHhcccC-cEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHH
Q 003450 433 IVDEGHRLKN--KDSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (819)
Q Consensus 433 IvDEaH~~kn--~~s~~~~~l~~l~~~-~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~ 509 (819)
|+|||.++-. ...+.......++.+ ..|+.|||- . ..+..|.
T Consensus 375 V~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf--------------------------~---------~kIe~la 419 (731)
T KOG0339|consen 375 VLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATF--------------------------K---------KKIEKLA 419 (731)
T ss_pred EEechhhhhccccHHHHHHHHhhcCCcceEEEeeccc--------------------------h---------HHHHHHH
Confidence 9999999854 333444444455544 468889882 1 1111111
Q ss_pred HHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCC
Q 003450 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (819)
Q Consensus 510 ~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~ 589 (819)
+ +++. -| ..++..++...-. .| .+.--+|
T Consensus 420 ---r---------d~L~--dp--VrvVqg~vgean~----dI----------------------TQ~V~V~--------- 448 (731)
T KOG0339|consen 420 ---R---------DILS--DP--VRVVQGEVGEANE----DI----------------------TQTVSVC--------- 448 (731)
T ss_pred ---H---------HHhc--CC--eeEEEeehhcccc----ch----------------------hheeeec---------
Confidence 1 1110 01 1111111110000 00 0000000
Q ss_pred CCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHH
Q 003450 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (819)
Q Consensus 590 ~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~ 669 (819)
-....|+..|.+-|.+....| +||||..-....+.|...|..+|+++..++|++.+.+|.+.+.+
T Consensus 449 --------------~s~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~ 513 (731)
T KOG0339|consen 449 --------------PSEEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSK 513 (731)
T ss_pred --------------cCcHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHH
Confidence 112347777777777766555 89999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHH
Q 003450 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (819)
Q Consensus 670 F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvE 739 (819)
|...... +|+.|+..++|++++...+||+||..-+...+.||+||.+|.|.+ -..|.|+|+...+
T Consensus 514 fKkk~~~---VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 514 FKKKRKP---VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred HhhcCCc---eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 9876655 899999999999999999999999999999999999999999987 4578899876544
No 81
>PRK09401 reverse gyrase; Reviewed
Probab=99.81 E-value=3.3e-18 Score=207.88 Aligned_cols=292 Identities=16% Similarity=0.198 Sum_probs=190.3
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCC--C
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ--M 359 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~--~ 359 (819)
|..++++|..++..+ ..++++++.++||+|||..++.++..+. ....++|||+|+ .|+.|+.+.+..++.. +
T Consensus 78 G~~pt~iQ~~~i~~i----l~g~dv~i~ApTGsGKT~f~l~~~~~l~-~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~ 152 (1176)
T PRK09401 78 GSKPWSLQRTWAKRL----LLGESFAIIAPTGVGKTTFGLVMSLYLA-KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGC 152 (1176)
T ss_pred CCCCcHHHHHHHHHH----HCCCcEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCc
Confidence 346899999988765 5789999999999999975544443332 234589999996 8889999999998753 4
Q ss_pred eEEEEecChh----HHH-HHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEe
Q 003450 360 NVVMYVGTSQ----ARN-IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIV 434 (819)
Q Consensus 360 ~v~~~~g~~~----~r~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIv 434 (819)
.+.+..|... .+. ..... ....++|+|+|++.+......+....++++||
T Consensus 153 ~~~~~~g~~~~~~~ek~~~~~~l-------------------------~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVv 207 (1176)
T PRK09401 153 GVKILYYHSSLKKKEKEEFLERL-------------------------KEGDFDILVTTSQFLSKNFDELPKKKFDFVFV 207 (1176)
T ss_pred eEEEEEccCCcchhHHHHHHHHH-------------------------hcCCCCEEEECHHHHHHHHHhccccccCEEEE
Confidence 4444444322 111 11111 12358999999999987766666667999999
Q ss_pred cccccccCcc--------------cHHHHHHHhcc-------------------------cCcEEEEeCCCCCCChhH-H
Q 003450 435 DEGHRLKNKD--------------SKLFSSLKQYS-------------------------TRHRVLLTGTPLQNNLDE-L 474 (819)
Q Consensus 435 DEaH~~kn~~--------------s~~~~~l~~l~-------------------------~~~~llLTgTP~~n~~~e-l 474 (819)
||||++-..+ ..+..++..++ ....++.|||........ +
T Consensus 208 DEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l 287 (1176)
T PRK09401 208 DDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKL 287 (1176)
T ss_pred EChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHH
Confidence 9999984311 11222222221 234577788863221110 0
Q ss_pred H-hhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHH
Q 003450 475 F-MLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILT 553 (819)
Q Consensus 475 ~-~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~ 553 (819)
+ .++.| .+.
T Consensus 288 ~~~ll~~--------------------------------------------------------~v~-------------- 297 (1176)
T PRK09401 288 FRELLGF--------------------------------------------------------EVG-------------- 297 (1176)
T ss_pred hhccceE--------------------------------------------------------Eec--------------
Confidence 0 00000 000
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecc
Q 003450 554 RNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQF 633 (819)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~ 633 (819)
.... .++.+ .|-|. ....|...|.+++..+ |..+|||++.
T Consensus 298 ----------~~~~-------~~rnI-~~~yi-------------------~~~~k~~~L~~ll~~l---~~~~LIFv~t 337 (1176)
T PRK09401 298 ----------SPVF-------YLRNI-VDSYI-------------------VDEDSVEKLVELVKRL---GDGGLIFVPS 337 (1176)
T ss_pred ----------Cccc-------ccCCc-eEEEE-------------------EcccHHHHHHHHHHhc---CCCEEEEEec
Confidence 0000 00000 00000 0113555666666543 4689999998
Q ss_pred hhH---HHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEec----cccccccCCccc-CCEEEEeCCC
Q 003450 634 QHM---LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS----TRAGGLGINLAT-ADTVIIYDSD 705 (819)
Q Consensus 634 ~~~---ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~s----t~a~~~GinL~~-a~~VI~~d~~ 705 (819)
... ++.|.++|...|+++..++|++ ++.+++|.++..+ +||+ |+.+++|||++. ..+||||+.|
T Consensus 338 ~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~---VLVatas~tdv~aRGIDiP~~IryVI~y~vP 409 (1176)
T PRK09401 338 DKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVD---VLVGVASYYGVLVRGIDLPERIRYAIFYGVP 409 (1176)
T ss_pred ccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCC---EEEEecCCCCceeecCCCCcceeEEEEeCCC
Confidence 766 9999999999999999999998 2346999876654 6777 689999999999 8999999999
Q ss_pred C------CcchHHHHhHhhhhcC
Q 003450 706 W------NPHADLQAMARAHRLG 722 (819)
Q Consensus 706 w------np~~~~Qa~gR~~R~G 722 (819)
- ....+.+++||+..+-
T Consensus 410 ~~~~~~~~~~~~~~~~~r~~~~~ 432 (1176)
T PRK09401 410 KFKFSLEEELAPPFLLLRLLSLL 432 (1176)
T ss_pred CEEEeccccccCHHHHHHHHhhc
Confidence 7 6677889999997543
No 82
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=1e-18 Score=176.13 Aligned_cols=325 Identities=18% Similarity=0.251 Sum_probs=208.5
Q ss_pred CCcccccccCCCCCCCCC------CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-CCC-ceEE
Q 003450 267 KPKEFQQYEHSPEFLSGG------SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RIS-PHLV 338 (819)
Q Consensus 267 ~~~~~~~~~~~p~~~~~~------~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~-~~~-~~LI 338 (819)
..+.|+++...|..+.|. .+...|..++-.| .....++.|-....|+|||......+..-..- ... ..+-
T Consensus 88 S~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPll--l~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iC 165 (477)
T KOG0332|consen 88 SAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLL--LAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCIC 165 (477)
T ss_pred ccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchh--hcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCcee
Confidence 457788888888877653 3555677777655 23567788999999999996643333322221 111 3444
Q ss_pred EecC-cchHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHH
Q 003450 339 VAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMI 417 (819)
Q Consensus 339 v~P~-~ll~qW~~e~~~~~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l 417 (819)
++|. .+..|-.+-+.+.+.-..+..-+.-++.+ ..+.....-+|+|-|++++
T Consensus 166 LaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk---------------------------~~rG~~i~eqIviGTPGtv 218 (477)
T KOG0332|consen 166 LAPTRELAPQTGEVVEEMGKFTELTASYAIRGSK---------------------------AKRGNKLTEQIVIGTPGTV 218 (477)
T ss_pred eCchHHHHHHHHHHHHHhcCceeeeEEEEecCcc---------------------------cccCCcchhheeeCCCccH
Confidence 5996 66677666555554222222222211111 0111234568999999999
Q ss_pred hhcccccCC---ccceEEEecccccccCcc---cHHHHHHHhcc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChH
Q 003450 418 NLDSASLKP---IKWQCMIVDEGHRLKNKD---SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLE 490 (819)
Q Consensus 418 ~~~~~~l~~---~~~~~lIvDEaH~~kn~~---s~~~~~l~~l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~ 490 (819)
......++. -+..++|+|||..+-+.. .........+. ....++.|||-.
T Consensus 219 ~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~----------------------- 275 (477)
T KOG0332|consen 219 LDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFV----------------------- 275 (477)
T ss_pred HHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhH-----------------------
Confidence 765544433 356799999999986644 22233333444 456688899831
Q ss_pred HHHHHHhccchHHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHH
Q 003450 491 EFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLI 570 (819)
Q Consensus 491 ~f~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~ 570 (819)
+....|..+ -+|.-....+.-+ . .. +
T Consensus 276 -------------------e~V~~Fa~k--------ivpn~n~i~Lk~e----------------e----------l~-L 301 (477)
T KOG0332|consen 276 -------------------EKVAAFALK--------IVPNANVIILKRE----------------E----------LA-L 301 (477)
T ss_pred -------------------HHHHHHHHH--------hcCCCceeeeehh----------------h----------cc-c
Confidence 011111111 1222222111100 0 00 0
Q ss_pred HHHHHHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCe
Q 003450 571 NVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQ 650 (819)
Q Consensus 571 ~~~~~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~ 650 (819)
..+.++--.|.+ ...|+++|.+|...+ . -...||||+...++..|...|...|..
T Consensus 302 ~~IkQlyv~C~~-----------------------~~~K~~~l~~lyg~~-t-igqsiIFc~tk~ta~~l~~~m~~~Gh~ 356 (477)
T KOG0332|consen 302 DNIKQLYVLCAC-----------------------RDDKYQALVNLYGLL-T-IGQSIIFCHTKATAMWLYEEMRAEGHQ 356 (477)
T ss_pred cchhhheeeccc-----------------------hhhHHHHHHHHHhhh-h-hhheEEEEeehhhHHHHHHHHHhcCce
Confidence 001111111221 345888888855433 3 237899999999999999999999999
Q ss_pred EEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCC------CcchHHHHhHhhhhcCCC
Q 003450 651 YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------NPHADLQAMARAHRLGQT 724 (819)
Q Consensus 651 ~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~w------np~~~~Qa~gR~~R~Gq~ 724 (819)
+..++|.++.++|..++++|+.+... +|++|+++++|||.+.++.||+||.|- .+..|++|+||++|.|.+
T Consensus 357 V~~l~G~l~~~~R~~ii~~Fr~g~~k---VLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkk 433 (477)
T KOG0332|consen 357 VSLLHGDLTVEQRAAIIDRFREGKEK---VLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKK 433 (477)
T ss_pred eEEeeccchhHHHHHHHHHHhcCcce---EEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhccccccccc
Confidence 99999999999999999999887655 899999999999999999999999984 577999999999999965
Q ss_pred C
Q 003450 725 N 725 (819)
Q Consensus 725 ~ 725 (819)
.
T Consensus 434 G 434 (477)
T KOG0332|consen 434 G 434 (477)
T ss_pred c
Confidence 4
No 83
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=1.6e-19 Score=177.99 Aligned_cols=303 Identities=17% Similarity=0.220 Sum_probs=211.0
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCC--CceEEEecC-cch---HHHHHHHHHHcCC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI--SPHLVVAPL-STL---RNWEREFATWAPQ 358 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~--~~~LIv~P~-~ll---~qW~~e~~~~~p~ 358 (819)
.+.|.|.+++--. ..|++.+.-.-.|+|||-..+.-+........ -..+|++|. .+. .|-..++.+.. +
T Consensus 107 kPSPiQeesIPia----LtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~-~ 181 (459)
T KOG0326|consen 107 KPSPIQEESIPIA----LTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHL-G 181 (459)
T ss_pred CCCCcccccccee----ecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhccc-C
Confidence 4566777776533 56777777888999999765444433333222 278999995 333 45677777776 6
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhccc--ccCCccceEEEecc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDE 436 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~lIvDE 436 (819)
+.+.+-+|+...+..+-+. ....+++|.|++.+....+ .-...+-.++|+||
T Consensus 182 i~vmvttGGT~lrDDI~Rl--------------------------~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DE 235 (459)
T KOG0326|consen 182 IKVMVTTGGTSLRDDIMRL--------------------------NQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDE 235 (459)
T ss_pred eEEEEecCCcccccceeee--------------------------cCceEEEEcCChhHHHHHhcccccchhceEEEech
Confidence 8888888887776533221 2467899999998864322 11223556899999
Q ss_pred cccccCcc--cHHHHHHHhcc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHh
Q 003450 437 GHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (819)
Q Consensus 437 aH~~kn~~--s~~~~~l~~l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~ 513 (819)
|+.+.+.. ..+-+.+..++ .+..++.|||- | -....|...|
T Consensus 236 ADKlLs~~F~~~~e~li~~lP~~rQillySATF----------------P---~tVk~Fm~~~----------------- 279 (459)
T KOG0326|consen 236 ADKLLSVDFQPIVEKLISFLPKERQILLYSATF----------------P---LTVKGFMDRH----------------- 279 (459)
T ss_pred hhhhhchhhhhHHHHHHHhCCccceeeEEeccc----------------c---hhHHHHHHHh-----------------
Confidence 99996543 33444555554 45667889982 0 0122333222
Q ss_pred hHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCc
Q 003450 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (819)
Q Consensus 514 ~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~ 593 (819)
+++-.. .-+.-+|+..
T Consensus 280 ------l~kPy~--------INLM~eLtl~-------------------------------------------------- 295 (459)
T KOG0326|consen 280 ------LKKPYE--------INLMEELTLK-------------------------------------------------- 295 (459)
T ss_pred ------ccCcce--------eehhhhhhhc--------------------------------------------------
Confidence 221110 0000000000
Q ss_pred cCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCC
Q 003450 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (819)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~ 673 (819)
.-..+-..+..+.|+..|..++.++.- .+.||||+.+..++.|+......||+...++..|.++.|..+.-.|+++
T Consensus 296 --GvtQyYafV~e~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G 371 (459)
T KOG0326|consen 296 --GVTQYYAFVEERQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNG 371 (459)
T ss_pred --chhhheeeechhhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhcc
Confidence 001111224467799999999988763 4799999999999999999999999999999999999999999999876
Q ss_pred CCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCC
Q 003450 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (819)
Q Consensus 674 ~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~ 725 (819)
.. ..|++|+..-+|||+++++.||.||.|-|+..|++|+||.+|.|--.
T Consensus 372 ~c---rnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG 420 (459)
T KOG0326|consen 372 KC---RNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG 420 (459)
T ss_pred cc---ceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc
Confidence 54 37999999999999999999999999999999999999999999754
No 84
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.80 E-value=1.3e-17 Score=181.27 Aligned_cols=85 Identities=22% Similarity=0.272 Sum_probs=71.8
Q ss_pred cCceEEEEecchhHHHHHHHHHhhCC--CeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEE
Q 003450 623 QGHRVLIYSQFQHMLDLLEDYLTFKK--WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (819)
Q Consensus 623 ~g~kvlIFs~~~~~ld~L~~~L~~~g--~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI 700 (819)
.+.++|||++....++.+...|...| +.+..++|.+++.+|.+.. ...+|++|+++++|||++.. .||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~---------~~~iLVaTdv~~rGiDi~~~-~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM---------QFDILLGTSTVDVGVDFKRD-WLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc---------cCCEEEEecHHhcccCCCCc-eEE
Confidence 47899999999999999999998764 6788999999999987653 22389999999999999864 666
Q ss_pred EeCCCCCcchHHHHhHhhh
Q 003450 701 IYDSDWNPHADLQAMARAH 719 (819)
Q Consensus 701 ~~d~~wnp~~~~Qa~gR~~ 719 (819)
++ +-++..|+||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 56 568899999999975
No 85
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=2.7e-18 Score=174.49 Aligned_cols=316 Identities=16% Similarity=0.262 Sum_probs=212.7
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHH-HH------hcCCCC-ceEEEecC-cchHHHHHHHHHH
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SL------FGERIS-PHLVVAPL-STLRNWEREFATW 355 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~-~l------~~~~~~-~~LIv~P~-~ll~qW~~e~~~~ 355 (819)
++.|.|-++-- ...+|..+|-...||+|||+..+.--. ++ +....+ ..||++|. .|..|-+-|..++
T Consensus 242 KPtPIqSQaWP----I~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 242 KPTPIQSQAWP----ILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred CCCcchhcccc----eeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 46777777632 236899999999999999976543211 11 112233 67999996 5556667776654
Q ss_pred c-CCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--ccccCCccceEE
Q 003450 356 A-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCM 432 (819)
Q Consensus 356 ~-p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~l 432 (819)
. -++..+.++|...-...+.+. ..+.+++|.|+..+... ...+.....-+|
T Consensus 318 syng~ksvc~ygggnR~eqie~l--------------------------krgveiiiatPgrlndL~~~n~i~l~siTYl 371 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGNRNEQIEDL--------------------------KRGVEIIIATPGRLNDLQMDNVINLASITYL 371 (629)
T ss_pred hhcCcceEEEecCCCchhHHHHH--------------------------hcCceEEeeCCchHhhhhhcCeeeeeeeEEE
Confidence 3 366777777766655555553 24678999999998642 333444456799
Q ss_pred EecccccccC--cccHHHHHHHhcccCcEEEE-eCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHH
Q 003450 433 IVDEGHRLKN--KDSKLFSSLKQYSTRHRVLL-TGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (819)
Q Consensus 433 IvDEaH~~kn--~~s~~~~~l~~l~~~~~llL-TgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~ 509 (819)
|+|||+++.. ...++.+.|..++.++...| |||= . ..+.+|
T Consensus 372 VlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATW-P----------------------------------~~VrrL- 415 (629)
T KOG0336|consen 372 VLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATW-P----------------------------------EGVRRL- 415 (629)
T ss_pred EecchhhhhcccccHHHHHHhhhcCCcceeeeecccC-c----------------------------------hHHHHH-
Confidence 9999999854 56788889999987766554 5661 1 111111
Q ss_pred HHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCC
Q 003450 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (819)
Q Consensus 510 ~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~ 589 (819)
- ...+|+-+. .++=.+.|... ....|. .+
T Consensus 416 --a----~sY~Kep~~-------v~vGsLdL~a~------------------------------~sVkQ~----i~---- 444 (629)
T KOG0336|consen 416 --A----QSYLKEPMI-------VYVGSLDLVAV------------------------------KSVKQN----II---- 444 (629)
T ss_pred --H----HHhhhCceE-------EEecccceeee------------------------------eeeeee----EE----
Confidence 1 111222111 00000011000 000000 00
Q ss_pred CCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHH
Q 003450 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (819)
Q Consensus 590 ~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~ 669 (819)
.-..+.|+..+..++..+ ....|+|||+....++|-|..-|...|+...-++|+-.+.+|+.+++.
T Consensus 445 -------------v~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~ 510 (629)
T KOG0336|consen 445 -------------VTTDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALED 510 (629)
T ss_pred -------------ecccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHh
Confidence 001344555555555544 346799999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCC
Q 003450 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (819)
Q Consensus 670 F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~ 736 (819)
|.. +.+.+|++|+.+++|||+++..||+.||.|-|-..|++|+||++|.|.+..- .-|++.+
T Consensus 511 ~ks---G~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~s--is~lt~~ 572 (629)
T KOG0336|consen 511 FKS---GEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTS--ISFLTRN 572 (629)
T ss_pred hhc---CceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcce--EEEEehh
Confidence 954 5667999999999999999999999999999999999999999999977543 2345544
No 86
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.80 E-value=4.1e-18 Score=207.49 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=84.6
Q ss_pred cCceEEEEecchhHHHHHHHHHhhCC---------------------------------CeEEEEeccCChHHHHHHHHH
Q 003450 623 QGHRVLIYSQFQHMLDLLEDYLTFKK---------------------------------WQYERIDGKVGGAERQIRIDR 669 (819)
Q Consensus 623 ~g~kvlIFs~~~~~ld~L~~~L~~~g---------------------------------~~~~~l~G~~~~~~R~~~i~~ 669 (819)
.+.++|||++.+...+.|...|+... +.+..+||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 47799999999999999988886431 124568899999999999999
Q ss_pred hcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhc
Q 003450 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (819)
Q Consensus 670 F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~ 721 (819)
|+++.- .+||+|.+++.|||+..++.||++++|.+...++||+||++|.
T Consensus 323 fK~G~L---rvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGEL---RCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCCc---eEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 987543 4899999999999999999999999999999999999999986
No 87
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.80 E-value=2.2e-17 Score=192.78 Aligned_cols=320 Identities=20% Similarity=0.229 Sum_probs=197.0
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEE
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~ 362 (819)
..|+++|.++++.+...+ .+...+|.++||+|||...+.++......+ +.+||++|. .++.|+.+.+.+.+ +..+.
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-~~vLvLvPt~~L~~Q~~~~l~~~f-g~~v~ 219 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-KQALVLVPEIALTPQMLARFRARF-GAPVA 219 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHHh-CCCEE
Confidence 469999999999885543 456799999999999999887776665543 489999996 78899999999877 56888
Q ss_pred EEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccccccC
Q 003450 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (819)
Q Consensus 363 ~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~~kn 442 (819)
+++|..........+. .......+|+|+|+..+.. .--++++|||||+|...-
T Consensus 220 ~~~s~~s~~~r~~~~~----------------------~~~~g~~~IVVgTrsal~~-----p~~~l~liVvDEeh~~s~ 272 (679)
T PRK05580 220 VLHSGLSDGERLDEWR----------------------KAKRGEAKVVIGARSALFL-----PFKNLGLIIVDEEHDSSY 272 (679)
T ss_pred EEECCCCHHHHHHHHH----------------------HHHcCCCCEEEeccHHhcc-----cccCCCEEEEECCCcccc
Confidence 8888755433322221 0012357899999987632 223568999999998632
Q ss_pred --cccHHH-----HHH-HhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhh
Q 003450 443 --KDSKLF-----SSL-KQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (819)
Q Consensus 443 --~~s~~~-----~~l-~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~ 514 (819)
...-.+ ..+ ........+++||||.... ++... .+.+.
T Consensus 273 ~~~~~p~y~~r~va~~ra~~~~~~~il~SATps~~s---~~~~~----~g~~~--------------------------- 318 (679)
T PRK05580 273 KQQEGPRYHARDLAVVRAKLENIPVVLGSATPSLES---LANAQ----QGRYR--------------------------- 318 (679)
T ss_pred ccCcCCCCcHHHHHHHHhhccCCCEEEEcCCCCHHH---HHHHh----cccee---------------------------
Confidence 111111 111 2234457889999994211 11100 00000
Q ss_pred HHHHHhhhhhh-hcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCc
Q 003450 515 HLLRRVKKDVM-KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (819)
Q Consensus 515 ~~lrr~k~dv~-~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~ 593 (819)
+-+...... ..+| .+..+.|....+. ..+..
T Consensus 319 --~~~l~~r~~~~~~p----~v~~id~~~~~~~---------------~~~~~--------------------------- 350 (679)
T PRK05580 319 --LLRLTKRAGGARLP----EVEIIDMRELLRG---------------ENGSF--------------------------- 350 (679)
T ss_pred --EEEeccccccCCCC----eEEEEechhhhhh---------------cccCC---------------------------
Confidence 000000000 0122 1222333221000 00000
Q ss_pred cCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEec-----------------------------------------
Q 003450 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQ----------------------------------------- 632 (819)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~----------------------------------------- 632 (819)
-| ..+.+.+.+..+.|+++|||.+
T Consensus 351 ------------ls---~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg 415 (679)
T PRK05580 351 ------------LS---PPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCG 415 (679)
T ss_pred ------------CC---HHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCc
Confidence 00 1122222222333444555432
Q ss_pred -------------------chhHHHHHHHHHhhC--CCeEEEEeccCC--hHHHHHHHHHhcCCCCCcEEEEeccccccc
Q 003450 633 -------------------FQHMLDLLEDYLTFK--KWQYERIDGKVG--GAERQIRIDRFNAKNSSRFCFLLSTRAGGL 689 (819)
Q Consensus 633 -------------------~~~~ld~L~~~L~~~--g~~~~~l~G~~~--~~~R~~~i~~F~~~~~~~~v~L~st~a~~~ 689 (819)
.....+.+++.|... +.++.++|++++ ..+++++++.|.+++.+ +|++|...+.
T Consensus 416 ~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~iak 492 (679)
T PRK05580 416 YQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEAD---ILIGTQMLAK 492 (679)
T ss_pred CCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCC---EEEEChhhcc
Confidence 122456777888764 889999999986 46799999999876544 8999999999
Q ss_pred cCCcccCCEEEEeCCCC---Cc---------chHHHHhHhhhhcCCCCcEEEEEEE
Q 003450 690 GINLATADTVIIYDSDW---NP---------HADLQAMARAHRLGQTNKVMIFRLI 733 (819)
Q Consensus 690 GinL~~a~~VI~~d~~w---np---------~~~~Qa~gR~~R~Gq~~~V~v~~li 733 (819)
|+|++.++.|+++|.|- .| +.+.|+.||++|.|....|.|...-
T Consensus 493 G~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~ 548 (679)
T PRK05580 493 GHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYH 548 (679)
T ss_pred CCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCC
Confidence 99999999999887762 22 5689999999998877777665443
No 88
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.79 E-value=2.6e-17 Score=191.05 Aligned_cols=308 Identities=17% Similarity=0.240 Sum_probs=215.7
Q ss_pred CCCchhHHHHHHHHHHhhcCCC--ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcch-HHHHHHHHHHcCCCe
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAPQMN 360 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~--~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll-~qW~~e~~~~~p~~~ 360 (819)
.+-.|-|+.+++-++.=+..++ .=+|++++|.|||=+|+-++......+ +.+-|+||+.++ .|-.+.|..-+.++.
T Consensus 593 yeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G-KQVAvLVPTTlLA~QHy~tFkeRF~~fP 671 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG-KQVAVLVPTTLLAQQHYETFKERFAGFP 671 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC-CeEEEEcccHHhHHHHHHHHHHHhcCCC
Confidence 5678899999999877666655 679999999999988876555444444 689999998777 455666665554655
Q ss_pred EEE-----EecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEec
Q 003450 361 VVM-----YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (819)
Q Consensus 361 v~~-----~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvD 435 (819)
|.+ +.+.+..+..+... ..++.||||.||..+.++..+- +..++|||
T Consensus 672 V~I~~LSRF~s~kE~~~il~~l-------------------------a~G~vDIvIGTHrLL~kdv~Fk---dLGLlIID 723 (1139)
T COG1197 672 VRIEVLSRFRSAKEQKEILKGL-------------------------AEGKVDIVIGTHRLLSKDVKFK---DLGLLIID 723 (1139)
T ss_pred eeEEEecccCCHHHHHHHHHHH-------------------------hcCCccEEEechHhhCCCcEEe---cCCeEEEe
Confidence 544 23344444444432 3468899999999998776644 45799999
Q ss_pred ccccccCcccHHHHHHHhcccC-cEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhh
Q 003450 436 EGHRLKNKDSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (819)
Q Consensus 436 EaH~~kn~~s~~~~~l~~l~~~-~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~ 514 (819)
|=||+ +=+.-..++.++++ .+|-||||||+..+. |.
T Consensus 724 EEqRF---GVk~KEkLK~Lr~~VDvLTLSATPIPRTL~-----Ms----------------------------------- 760 (1139)
T COG1197 724 EEQRF---GVKHKEKLKELRANVDVLTLSATPIPRTLN-----MS----------------------------------- 760 (1139)
T ss_pred chhhc---CccHHHHHHHHhccCcEEEeeCCCCcchHH-----HH-----------------------------------
Confidence 99999 44555667777655 789999999876631 00
Q ss_pred HHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCcc
Q 003450 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (819)
Q Consensus 515 ~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~ 594 (819)
+--.++--...-||.....|.--..+..-...++
T Consensus 761 --m~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ire-------------------------------------------- 794 (1139)
T COG1197 761 --LSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIRE-------------------------------------------- 794 (1139)
T ss_pred --HhcchhhhhccCCCCCCcceEEEEecCChHHHHH--------------------------------------------
Confidence 0001111111345555544433332221111111
Q ss_pred CcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhC--CCeEEEEeccCChHHHHHHHHHhcC
Q 003450 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNA 672 (819)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~--g~~~~~l~G~~~~~~R~~~i~~F~~ 672 (819)
.++.++ .+|.+|....+.+..+..+...|+.. ..++...||.|+..+-++++..|.+
T Consensus 795 --------------------AI~REl-~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~ 853 (1139)
T COG1197 795 --------------------AILREL-LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN 853 (1139)
T ss_pred --------------------HHHHHH-hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHc
Confidence 122223 34678877788888888888888754 5678999999999999999999987
Q ss_pred CCCCcEEEEeccccccccCCcccCCEEEEeCCC-CCcchHHHHhHhhhhcCCCCcEEEEEEEeC
Q 003450 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (819)
Q Consensus 673 ~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~-wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~ 735 (819)
+..+ +|+||.....|||+++|||+|+-+.+ +--++.-|-.||++|-+ +..+-|.++..
T Consensus 854 g~~d---VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~--~~AYAYfl~p~ 912 (1139)
T COG1197 854 GEYD---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSN--KQAYAYFLYPP 912 (1139)
T ss_pred CCCC---EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCcc--ceEEEEEeecC
Confidence 6655 89999999999999999999999886 78889999999999953 34555655543
No 89
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.79 E-value=8.8e-18 Score=198.19 Aligned_cols=330 Identities=19% Similarity=0.205 Sum_probs=226.2
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH-HHHhcCCCCceEEEecC-cchHHHHHHHHHHc---C-C
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGERISPHLVVAPL-STLRNWEREFATWA---P-Q 358 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l-~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~---p-~ 358 (819)
.|+.||.+|++.+ ..|+++|+..+||+|||...+..+ ..+.......+|+|-|. .|.....+.|.++. | .
T Consensus 70 ~lY~HQ~~A~~~~----~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~ 145 (851)
T COG1205 70 RLYSHQVDALRLI----REGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGK 145 (851)
T ss_pred cccHHHHHHHHHH----HCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCc
Confidence 4999999999877 788999999999999999865554 45555555689999995 77777888888876 3 5
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc------ccccCCccceEE
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD------SASLKPIKWQCM 432 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~------~~~l~~~~~~~l 432 (819)
+++..|+|.........- -...++|++|+|+|+... .-.+..-++.+|
T Consensus 146 v~~~~y~Gdt~~~~r~~~--------------------------~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~l 199 (851)
T COG1205 146 VTFGRYTGDTPPEERRAI--------------------------IRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYL 199 (851)
T ss_pred ceeeeecCCCChHHHHHH--------------------------HhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEE
Confidence 678888887655432111 125789999999999641 111111247899
Q ss_pred EecccccccCc-ccHHHHHHHhcc--------cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHH
Q 003450 433 IVDEGHRLKNK-DSKLFSSLKQYS--------TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEE 503 (819)
Q Consensus 433 IvDEaH~~kn~-~s~~~~~l~~l~--------~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~ 503 (819)
||||+|-+.+. +|.+...++.+. ....++.|||- ++..+|...+....-
T Consensus 200 VvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f-- 257 (851)
T COG1205 200 VVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDF-- 257 (851)
T ss_pred EEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCcc--
Confidence 99999999763 455554444442 34668999994 233334333321100
Q ss_pred HHHHHHHHHhhHHHHHhhhhhhh-cCCCceEEEEEecC-CHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcC
Q 003450 504 QISRLHRMLAPHLLRRVKKDVMK-ELPPKKELILRVEL-SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (819)
Q Consensus 504 ~~~~l~~~l~~~~lrr~k~dv~~-~lp~~~~~~v~~~l-s~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~ 581 (819)
...+.. ..|....+.+.-.. .......
T Consensus 258 -----------------~~~v~~~g~~~~~~~~~~~~p~~~~~~~~---------------------------------- 286 (851)
T COG1205 258 -----------------EVPVDEDGSPRGLRYFVRREPPIRELAES---------------------------------- 286 (851)
T ss_pred -----------------eeeccCCCCCCCceEEEEeCCcchhhhhh----------------------------------
Confidence 000111 12222222221111 1000000
Q ss_pred CCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHH----HHHhhCC----CeEEE
Q 003450 582 HPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLE----DYLTFKK----WQYER 653 (819)
Q Consensus 582 hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~----~~L~~~g----~~~~~ 653 (819)
....+...+..++..+..+|-++|+|+.+...++.+. ..+...+ ..+..
T Consensus 287 -----------------------~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~ 343 (851)
T COG1205 287 -----------------------IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVST 343 (851)
T ss_pred -----------------------cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheee
Confidence 0224566667777778888999999999999988886 4444444 56888
Q ss_pred EeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCC-CcchHHHHhHhhhhcCCCCcEEEEEE
Q 003450 654 IDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKVMIFRL 732 (819)
Q Consensus 654 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~w-np~~~~Qa~gR~~R~Gq~~~V~v~~l 732 (819)
+.|++...+|.++...|+.++.. ++++|.++..||++.+.+.||..--|- +-..+.|+.||++|-+|.-.+ +..
T Consensus 344 ~~~~~~~~er~~ie~~~~~g~~~---~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~--~~v 418 (851)
T COG1205 344 YRAGLHREERRRIEAEFKEGELL---GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLV--LVV 418 (851)
T ss_pred ccccCCHHHHHHHHHHHhcCCcc---EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceE--EEE
Confidence 99999999999999999876544 899999999999999999999999998 789999999999999955433 223
Q ss_pred EeCCCHHHHHHHH
Q 003450 733 ITRGSIEERMMQM 745 (819)
Q Consensus 733 i~~~TvEe~i~~~ 745 (819)
.-.+.++..+...
T Consensus 419 ~~~~~~d~yy~~~ 431 (851)
T COG1205 419 LRSDPLDSYYLRH 431 (851)
T ss_pred eCCCccchhhhhC
Confidence 3366677766543
No 90
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.78 E-value=3.9e-18 Score=179.71 Aligned_cols=341 Identities=18% Similarity=0.248 Sum_probs=212.6
Q ss_pred CceEEEcCCCCcHHHH-HHHHHHHHhcC-------------CCC-ceEEEecC-cchHHHHHHHHHHc--CCCeEEEEec
Q 003450 305 THVILADEMGLGKTIQ-SIAFLASLFGE-------------RIS-PHLVVAPL-STLRNWEREFATWA--PQMNVVMYVG 366 (819)
Q Consensus 305 ~~~iLade~GlGKT~~-~i~~l~~l~~~-------------~~~-~~LIv~P~-~ll~qW~~e~~~~~--p~~~v~~~~g 366 (819)
...|=+++||+|||+. +|-++..+.+. +.+ -.|||+|+ .|..|-.+-|.... +++.+..+.|
T Consensus 220 ~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~G 299 (731)
T KOG0347|consen 220 VDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITG 299 (731)
T ss_pred hhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeec
Confidence 5778899999999987 45555533321 122 27999997 67778777776665 5889999999
Q ss_pred ChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc----ccccCCc-cceEEEeccccccc
Q 003450 367 TSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPI-KWQCMIVDEGHRLK 441 (819)
Q Consensus 367 ~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~----~~~l~~~-~~~~lIvDEaH~~k 441 (819)
+-.....-+-. ...++|||+|++.+..- .-.+..+ +..++|+||++|+-
T Consensus 300 GLavqKQqRlL--------------------------~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmv 353 (731)
T KOG0347|consen 300 GLAVQKQQRLL--------------------------NQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMV 353 (731)
T ss_pred hhHHHHHHHHH--------------------------hcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHh
Confidence 87665544332 13679999999988642 1123333 46799999999994
Q ss_pred --CcccHHHHHHHhcc------cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHh
Q 003450 442 --NKDSKLFSSLKQYS------TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (819)
Q Consensus 442 --n~~s~~~~~l~~l~------~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~ 513 (819)
+.-..+.+.|..+. -+..+..|||---.-...+-. ..-........-..+..+++
T Consensus 354 ekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~-----------------~~k~~~k~~~~~~kiq~Lmk 416 (731)
T KOG0347|consen 354 EKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSS-----------------SRKKKDKEDELNAKIQHLMK 416 (731)
T ss_pred hhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHH-----------------hhhccchhhhhhHHHHHHHH
Confidence 43344555555543 224488899941110000000 00000000011111222222
Q ss_pred hHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCc
Q 003450 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (819)
Q Consensus 514 ~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~ 593 (819)
.+-+ .-+| ..+.+++.+.-. ..+.+-+--|. | + +.+.
T Consensus 417 ~ig~---------~~kp-----kiiD~t~q~~ta-----------------------~~l~Es~I~C~-~-~----eKD~ 453 (731)
T KOG0347|consen 417 KIGF---------RGKP-----KIIDLTPQSATA-----------------------STLTESLIECP-P-L----EKDL 453 (731)
T ss_pred HhCc---------cCCC-----eeEecCcchhHH-----------------------HHHHHHhhcCC-c-c----ccce
Confidence 1111 1111 224444433221 11112222221 1 0 0000
Q ss_pred cCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCC
Q 003450 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (819)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~ 673 (819)
.|.=+ +..-..++||||+.++.+..|.-+|...+++...++..|.+.+|-+.+.+|.+.
T Consensus 454 ------------------ylyYf---l~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~ 512 (731)
T KOG0347|consen 454 ------------------YLYYF---LTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQS 512 (731)
T ss_pred ------------------eEEEE---EeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcC
Confidence 00000 011134899999999999999999999999999999999999999999999886
Q ss_pred CCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeC------------------
Q 003450 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR------------------ 735 (819)
Q Consensus 674 ~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~------------------ 735 (819)
.++ +|++|+++++|||++++.|||+|..|-....|++|-||..|.+... |.|. |+.+
T Consensus 513 ~~~---VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~G-vsvm-l~~P~e~~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 513 PSG---VLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEG-VSVM-LCGPQEVGPLKKLCKTLKKKED 587 (731)
T ss_pred CCe---EEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCC-eEEE-EeChHHhHHHHHHHHHHhhccC
Confidence 665 8999999999999999999999999999999999999999987643 2111 1111
Q ss_pred ---CCHHHHHHHHHHHhhhhHHHHh
Q 003450 736 ---GSIEERMMQMTKKKMVLEHLVV 757 (819)
Q Consensus 736 ---~TvEe~i~~~~~~K~~l~~~v~ 757 (819)
-.+++.++..++.+..|+..+.
T Consensus 588 lpifPv~~~~m~~lkeRvrLA~ei~ 612 (731)
T KOG0347|consen 588 LPIFPVETDIMDALKERVRLAREID 612 (731)
T ss_pred CCceeccHHHHHHHHHHHHHHHHHH
Confidence 1457777777777777776664
No 91
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=5.1e-17 Score=186.72 Aligned_cols=120 Identities=17% Similarity=0.162 Sum_probs=107.7
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
...|..++.+.+..+.+.|..|||||.+....+.|..+|...|+++..++|.....+|+.+...|+.+. ++|+|+
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~-----VtIATN 500 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA-----VTIATN 500 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc-----EEEecc
Confidence 456888899999999999999999999999999999999999999999999999999999999997752 799999
Q ss_pred cccccCCccc--------------------------------------CCEEEEeCCCCCcchHHHHhHhhhhcCCCCcE
Q 003450 686 AGGLGINLAT--------------------------------------ADTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (819)
Q Consensus 686 a~~~GinL~~--------------------------------------a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V 727 (819)
.+|+|+|+.= .=+||.-...-|...+.|..||++|.|.....
T Consensus 501 mAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss 580 (896)
T PRK13104 501 MAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSS 580 (896)
T ss_pred CccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 9999999762 23789999999999999999999999998766
Q ss_pred EEE
Q 003450 728 MIF 730 (819)
Q Consensus 728 ~v~ 730 (819)
..|
T Consensus 581 ~f~ 583 (896)
T PRK13104 581 RFY 583 (896)
T ss_pred EEE
Confidence 544
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.76 E-value=9.3e-17 Score=180.92 Aligned_cols=294 Identities=17% Similarity=0.180 Sum_probs=183.1
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCcc
Q 003450 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPK 386 (819)
Q Consensus 308 iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~ 386 (819)
+|.++||+|||.+++.++......+ +.+||++|. ++..|+.+.|.+.+ +..+.++++..........+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g-~~vLvlvP~i~L~~Q~~~~l~~~f-~~~v~vlhs~~~~~er~~~~~-------- 70 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALG-KSVLVLVPEIALTPQMIQRFKYRF-GSQVAVLHSGLSDSEKLQAWR-------- 70 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHHh-CCcEEEEECCCCHHHHHHHHH--------
Confidence 4778999999999888877766543 479999996 78899999999877 567888888654433222221
Q ss_pred ccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEeccccccc--CcccH------HHHHHHhcccCc
Q 003450 387 KVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLK--NKDSK------LFSSLKQYSTRH 458 (819)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~~k--n~~s~------~~~~l~~l~~~~ 458 (819)
.......+|||+|+..+.. .-.++++|||||.|... ....- +...........
T Consensus 71 --------------~~~~g~~~IVVGTrsalf~-----p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~ 131 (505)
T TIGR00595 71 --------------KVKNGEILVVIGTRSALFL-----PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCP 131 (505)
T ss_pred --------------HHHcCCCCEEECChHHHcC-----cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCC
Confidence 0012356899999987742 22356899999999873 22221 112222334567
Q ss_pred EEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHHH-HHhhhhhhhcCCCceEEEEE
Q 003450 459 RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL-RRVKKDVMKELPPKKELILR 537 (819)
Q Consensus 459 ~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~l-rr~k~dv~~~lp~~~~~~v~ 537 (819)
.+++||||.. +.++.... +.+ ....+ +|... ..+|. ..+
T Consensus 132 vil~SATPsl---es~~~~~~----g~~--------------------------~~~~l~~r~~~---~~~p~--v~v-- 171 (505)
T TIGR00595 132 VVLGSATPSL---ESYHNAKQ----KAY--------------------------RLLVLTRRVSG---RKPPE--VKL-- 171 (505)
T ss_pred EEEEeCCCCH---HHHHHHhc----CCe--------------------------EEeechhhhcC---CCCCe--EEE--
Confidence 8999999941 11111100 000 00000 00000 01111 111
Q ss_pred ecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHH
Q 003450 538 VELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMM 617 (819)
Q Consensus 538 ~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll 617 (819)
+.|....+. +.--..|.+.+
T Consensus 172 id~~~~~~~------------------------------------------------------------~~ls~~l~~~i 191 (505)
T TIGR00595 172 IDMRKEPRQ------------------------------------------------------------SFLSPELITAI 191 (505)
T ss_pred Eeccccccc------------------------------------------------------------CCccHHHHHHH
Confidence 122110000 00001233444
Q ss_pred HHHHhcCceEEEEecchh------------------------------------------------------------HH
Q 003450 618 VKLKEQGHRVLIYSQFQH------------------------------------------------------------ML 637 (819)
Q Consensus 618 ~~l~~~g~kvlIFs~~~~------------------------------------------------------------~l 637 (819)
.+..+.|+++|||.+.+. -.
T Consensus 192 ~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gt 271 (505)
T TIGR00595 192 EQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGT 271 (505)
T ss_pred HHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccH
Confidence 455566888888843211 14
Q ss_pred HHHHHHHhhC--CCeEEEEeccCChHHH--HHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCC---Cc--
Q 003450 638 DLLEDYLTFK--KWQYERIDGKVGGAER--QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW---NP-- 708 (819)
Q Consensus 638 d~L~~~L~~~--g~~~~~l~G~~~~~~R--~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~w---np-- 708 (819)
+.+++.|... +.++.++|++++..++ +++++.|.+++.+ +||+|...+.|+|++.++.|+++|.|- .|
T Consensus 272 e~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ 348 (505)
T TIGR00595 272 EQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD---ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDF 348 (505)
T ss_pred HHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC---EEEeCcccccCCCCCcccEEEEEcCcccccCccc
Confidence 7777777755 8899999999887666 8999999876544 899999999999999999998877763 23
Q ss_pred -------chHHHHhHhhhhcCCCCcEEEEEEE
Q 003450 709 -------HADLQAMARAHRLGQTNKVMIFRLI 733 (819)
Q Consensus 709 -------~~~~Qa~gR~~R~Gq~~~V~v~~li 733 (819)
+.+.|+.||++|.+....|.|..+-
T Consensus 349 ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~ 380 (505)
T TIGR00595 349 RAAERGFQLLTQVAGRAGRAEDPGQVIIQTYN 380 (505)
T ss_pred chHHHHHHHHHHHHhccCCCCCCCEEEEEeCC
Confidence 5689999999998887777655433
No 93
>COG4889 Predicted helicase [General function prediction only]
Probab=99.76 E-value=6e-18 Score=186.01 Aligned_cols=391 Identities=17% Similarity=0.211 Sum_probs=198.9
Q ss_pred CCCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHc-CCC
Q 003450 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA-PQM 359 (819)
Q Consensus 282 ~~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~-p~~ 359 (819)
...+|||||..|++.....+..+.++=|.+.+|+|||.+++-+..++.. .++|++||+ +|+.|=-+|...-. -++
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~---~~iL~LvPSIsLLsQTlrew~~~~~l~~ 234 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA---ARILFLVPSISLLSQTLREWTAQKELDF 234 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh---hheEeecchHHHHHHHHHHHhhccCccc
Confidence 3468999999999999999998888889999999999999998888754 589999997 88887555543221 133
Q ss_pred eEEEEe-cChhHHH--HHHHhhhcCCCCc--cccccccCCccccccccccccccEEEchhhHHhh--cccccCCccceEE
Q 003450 360 NVVMYV-GTSQARN--IIREYEFYFPKNP--KKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL--DSASLKPIKWQCM 432 (819)
Q Consensus 360 ~v~~~~-g~~~~r~--~~~~~e~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~--~~~~l~~~~~~~l 432 (819)
.....+ .++-+|. .+.-+++-++... ..+... .....+..+--||++||+++.. .......-.||+|
T Consensus 235 ~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~------~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDli 308 (1518)
T COG4889 235 RASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSE------MEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLI 308 (1518)
T ss_pred eeEEEecCccccccccccccccCCCCCcccHHHHHHH------HHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEE
Confidence 333333 3333332 1222222222221 010000 0111223456699999999864 3344455589999
Q ss_pred EecccccccCcc-----cHHHHHH---HhcccCcEEEEeCCCCC------CChhHHHhhhcccCCCCCCChHHHHHHHhc
Q 003450 433 IVDEGHRLKNKD-----SKLFSSL---KQYSTRHRVLLTGTPLQ------NNLDELFMLMHFLDAGKFGSLEEFQEEFKD 498 (819)
Q Consensus 433 IvDEaH~~kn~~-----s~~~~~l---~~l~~~~~llLTgTP~~------n~~~el~~ll~~l~~~~~~~~~~f~~~~~~ 498 (819)
|+|||||..+-. ...+..+ ..+++..|+.|||||-- .+..|--..+.-+ .+...|.+.|..
T Consensus 309 icDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SM-----DDe~~fGeef~r 383 (1518)
T COG4889 309 ICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSM-----DDELTFGEEFHR 383 (1518)
T ss_pred EecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeecc-----chhhhhchhhhc
Confidence 999999974311 1111111 12356789999999921 0111100001000 111122222221
Q ss_pred cchHHHHHHHHHHHhhHHHHHhhhhhhhc-CCCceEEEEEecCCHHHHHHHHHHHHHHHHHHH-hcCCCcchHHHHHHHH
Q 003450 499 INQEEQISRLHRMLAPHLLRRVKKDVMKE-LPPKKELILRVELSSKQKEYYKAILTRNYQILT-RRGGAQISLINVVMEL 576 (819)
Q Consensus 499 ~~~~~~~~~l~~~l~~~~lrr~k~dv~~~-lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~-~~~~~~~~~~~~~~~l 576 (819)
+.- -+.|..+ |..+...++.|.--..+..+-..+..- ...|. ...+.-....+.++.-
T Consensus 384 l~F-------------------geAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~-~~~L~~dd~~kIvG~wnGlakr 443 (1518)
T COG4889 384 LGF-------------------GEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGP-SKGLALDDVSKIVGCWNGLAKR 443 (1518)
T ss_pred ccH-------------------HHHHHhhhhccceEEEEEechhhhhhhhhhhccCc-ccccchhhhhhhhhhhhhhhhh
Confidence 111 1112222 344555554443211111111110000 00000 0000000011111100
Q ss_pred HHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHH----hhCCCeEE
Q 003450 577 RKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL----TFKKWQYE 652 (819)
Q Consensus 577 r~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L----~~~g~~~~ 652 (819)
-. -..+-.-......+....-.+..-++.|.++.- +|...++.....| ....+.+-
T Consensus 444 ~g-~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~-------------------sFe~Vve~Y~~Elk~d~~nL~iSi~ 503 (1518)
T COG4889 444 NG-EDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAE-------------------SFETVVEAYDEELKKDFKNLKISID 503 (1518)
T ss_pred cc-ccccccCCcCCchHHHHHHHHHHhhHHHHHHHH-------------------HHHHHHHHHHHHHHhcCCCceEEee
Confidence 00 000000000000000001111111222222211 1222222222222 22345567
Q ss_pred EEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCc
Q 003450 653 RIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNK 726 (819)
Q Consensus 653 ~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 726 (819)
.+||.|...+|......-+.-......+|-..+++++|+|+|+.|.||||||--+....+|+.||+.|....|+
T Consensus 504 HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~ 577 (1518)
T COG4889 504 HVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKK 577 (1518)
T ss_pred cccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCc
Confidence 79999999999666554443233444579999999999999999999999999999999999999999877664
No 94
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.75 E-value=7e-17 Score=187.90 Aligned_cols=310 Identities=20% Similarity=0.188 Sum_probs=194.9
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHc-CCCeEE
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA-PQMNVV 362 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~-p~~~v~ 362 (819)
+|.|.|.+++.-. ...++|+|++.+||+|||++|..++..-..++.++++.|||. +|..+-.++|.+|. -+++|.
T Consensus 31 el~~~qq~av~~~---~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~ 107 (766)
T COG1204 31 ELFNPQQEAVEKG---LLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVG 107 (766)
T ss_pred HhhHHHHHHhhcc---ccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEE
Confidence 7999999998644 234899999999999999999888777666666799999995 88888888888443 289999
Q ss_pred EEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhccc--ccCCccceEEEecccccc
Q 003450 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDEGHRL 440 (819)
Q Consensus 363 ~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~lIvDEaH~~ 440 (819)
+++|+.+... ....+++|+|+||+.+-.-.. ..-....++|||||+|.+
T Consensus 108 ~~TgD~~~~~-----------------------------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l 158 (766)
T COG1204 108 ISTGDYDLDD-----------------------------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLL 158 (766)
T ss_pred EecCCcccch-----------------------------hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeec
Confidence 9999976542 123578999999998853211 112235689999999999
Q ss_pred cCcc-c----HHHHHHHhccc-CcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhh
Q 003450 441 KNKD-S----KLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (819)
Q Consensus 441 kn~~-s----~~~~~l~~l~~-~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~ 514 (819)
.... . .....+..... -+.++||||- .|+.|+-..++ ...+.+.-.|...+
T Consensus 159 ~d~~RG~~lE~iv~r~~~~~~~~rivgLSATl--pN~~evA~wL~---a~~~~~~~rp~~l~------------------ 215 (766)
T COG1204 159 GDRTRGPVLESIVARMRRLNELIRIVGLSATL--PNAEEVADWLN---AKLVESDWRPVPLR------------------ 215 (766)
T ss_pred CCcccCceehhHHHHHHhhCcceEEEEEeeec--CCHHHHHHHhC---CcccccCCCCcccc------------------
Confidence 6541 1 12222222333 4678999994 23333333222 11110000000000
Q ss_pred HHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCcc
Q 003450 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (819)
Q Consensus 515 ~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~ 594 (819)
...|... ......-. . .
T Consensus 216 -----------~~v~~~~-~~~~~~~~------------------------------------------------~-k-- 232 (766)
T COG1204 216 -----------RGVPYVG-AFLGADGK------------------------------------------------K-K-- 232 (766)
T ss_pred -----------cCCccce-EEEEecCc------------------------------------------------c-c--
Confidence 0000000 00000000 0 0
Q ss_pred CcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhh----C-----------------------
Q 003450 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF----K----------------------- 647 (819)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~----~----------------------- 647 (819)
.....+...+..++....+.|..+|||++.+.........|.. .
T Consensus 233 ---------~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 303 (766)
T COG1204 233 ---------TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPT 303 (766)
T ss_pred ---------cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccc
Confidence 0011233344555556667789999999987654443333331 0
Q ss_pred ----------CCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEE-----eC-----CCCC
Q 003450 648 ----------KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-----YD-----SDWN 707 (819)
Q Consensus 648 ----------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~-----~d-----~~wn 707 (819)
-..++.-+.+++.++|+-+-+.|+.+ .+.+|++|...+.|+|||+ .+||+ || -+-+
T Consensus 304 ~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g---~ikVlv~TpTLA~GVNLPA-~~VIIk~~~~y~~~~g~~~i~ 379 (766)
T COG1204 304 SEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKG---KIKVLVSTPTLAAGVNLPA-RTVIIKDTRRYDPKGGIVDIP 379 (766)
T ss_pred cchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcC---CceEEEechHHhhhcCCcc-eEEEEeeeEEEcCCCCeEECc
Confidence 01245567888999999999999764 4558999999999999995 44444 55 3456
Q ss_pred cchHHHHhHhhhhcCCCC
Q 003450 708 PHADLQAMARAHRLGQTN 725 (819)
Q Consensus 708 p~~~~Qa~gR~~R~Gq~~ 725 (819)
+..+.|..||++|.|=..
T Consensus 380 ~~dv~QM~GRAGRPg~d~ 397 (766)
T COG1204 380 VLDVLQMAGRAGRPGYDD 397 (766)
T ss_pred hhhHhhccCcCCCCCcCC
Confidence 788999999999998543
No 95
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.74 E-value=2.1e-16 Score=192.58 Aligned_cols=280 Identities=14% Similarity=0.174 Sum_probs=176.1
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCC--Ce
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ--MN 360 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~--~~ 360 (819)
..+.+.|..++..+ ..|++.++.++||+|||..++.++..+... ..++|||+|+ .|+.|+.+++..++.. +.
T Consensus 77 ~~p~~iQ~~~i~~i----l~G~d~vi~ApTGsGKT~f~l~~~~~l~~~-g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~ 151 (1171)
T TIGR01054 77 SEPWSIQKMWAKRV----LRGDSFAIIAPTGVGKTTFGLAMSLFLAKK-GKRCYIILPTTLLVIQVAEKISSLAEKAGVG 151 (1171)
T ss_pred CCCcHHHHHHHHHH----hCCCeEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCc
Confidence 35788999988766 678899999999999998666555544333 3589999996 7778999999988753 22
Q ss_pred E---EEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEeccc
Q 003450 361 V---VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEG 437 (819)
Q Consensus 361 v---~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEa 437 (819)
+ ..++|...........+- .....++|+|+|++.+......+.. +++++|||||
T Consensus 152 ~~~i~~~~Gg~~~~e~~~~~~~----------------------l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEa 208 (1171)
T TIGR01054 152 TVNIGAYHSRLPTKEKKEFMER----------------------IENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDV 208 (1171)
T ss_pred eeeeeeecCCCCHHHHHHHHHH----------------------HhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeCh
Confidence 2 346676543322111100 0123589999999999876655554 7999999999
Q ss_pred ccccCcc-------------cH-HHHHH----------------------HhcccCc---EEEEeCCCCCCChhHHHhhh
Q 003450 438 HRLKNKD-------------SK-LFSSL----------------------KQYSTRH---RVLLTGTPLQNNLDELFMLM 478 (819)
Q Consensus 438 H~~kn~~-------------s~-~~~~l----------------------~~l~~~~---~llLTgTP~~n~~~el~~ll 478 (819)
|++-..+ .. +..++ ..+.... .++.|||+........+ +
T Consensus 209 D~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l--~ 286 (1171)
T TIGR01054 209 DALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKL--F 286 (1171)
T ss_pred HhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHH--c
Confidence 9985421 11 11111 1111111 24468885332211000 0
Q ss_pred cccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHH
Q 003450 479 HFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQI 558 (819)
Q Consensus 479 ~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~ 558 (819)
. ..++ | ++....
T Consensus 287 r----~ll~----~------------------------------~v~~~~------------------------------ 298 (1171)
T TIGR01054 287 R----ELLG----F------------------------------EVGGGS------------------------------ 298 (1171)
T ss_pred c----cccc----e------------------------------EecCcc------------------------------
Confidence 0 0000 0 000000
Q ss_pred HHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecch---h
Q 003450 559 LTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQ---H 635 (819)
Q Consensus 559 l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~---~ 635 (819)
. .++.+ .|.|. ..+.+...|.+++..+ |.++|||++.. .
T Consensus 299 --------~-------~~r~I-~~~~~-------------------~~~~~~~~L~~ll~~l---~~~~IVFv~t~~~~~ 340 (1171)
T TIGR01054 299 --------D-------TLRNV-VDVYV-------------------EDEDLKETLLEIVKKL---GTGGIVYVSIDYGKE 340 (1171)
T ss_pred --------c-------cccce-EEEEE-------------------ecccHHHHHHHHHHHc---CCCEEEEEeccccHH
Confidence 0 00000 00010 0111223344555443 56899999998 8
Q ss_pred HHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEec----cccccccCCccc-CCEEEEeCCCC
Q 003450 636 MLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS----TRAGGLGINLAT-ADTVIIYDSDW 706 (819)
Q Consensus 636 ~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~s----t~a~~~GinL~~-a~~VI~~d~~w 706 (819)
.++.|.++|...|+++..++|+++ ++++++|.++..+ +||+ |+.+++|||++. .++||+||.|-
T Consensus 341 ~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G~~~---vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 341 KAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEGEID---VLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcCCCC---EEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 999999999999999999999986 3789999876544 6777 589999999999 89999999983
No 96
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=1.5e-16 Score=182.04 Aligned_cols=118 Identities=17% Similarity=0.158 Sum_probs=102.2
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
...|...|.+.+......|.++||||.+....+.|...|...|+++..++|.....+++.+...++. + .++|+|+
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~---g--~VtIATn 496 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQR---G--AVTIATN 496 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCC---c--eEEEEec
Confidence 3458889999998888889999999999999999999999999999999999876666555555533 2 2799999
Q ss_pred cccccCCcc---cCC-----EEEEeCCCCCcchHHHHhHhhhhcCCCCcEE
Q 003450 686 AGGLGINLA---TAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (819)
Q Consensus 686 a~~~GinL~---~a~-----~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 728 (819)
.+|+|+|+. .+. +||.++.+-|...+.|+.||++|.|......
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 999999995 567 9999999999999999999999999987653
No 97
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=3.2e-16 Score=180.16 Aligned_cols=387 Identities=17% Similarity=0.156 Sum_probs=221.7
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcch-HH---HHHHHHHHcCC
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RN---WEREFATWAPQ 358 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll-~q---W~~e~~~~~p~ 358 (819)
|...++-|+-|.--| +.|-|.-+.||.|||+++...+....-.+ ..+-||+|+..+ .| |...+..+. +
T Consensus 79 g~~~~dvQlig~l~L------~~G~Iaem~TGeGKTLva~lpa~l~aL~G-~~V~IvTpn~yLA~rd~e~~~~l~~~L-G 150 (830)
T PRK12904 79 GMRHFDVQLIGGMVL------HEGKIAEMKTGEGKTLVATLPAYLNALTG-KGVHVVTVNDYLAKRDAEWMGPLYEFL-G 150 (830)
T ss_pred CCCCCccHHHhhHHh------cCCchhhhhcCCCcHHHHHHHHHHHHHcC-CCEEEEecCHHHHHHHHHHHHHHHhhc-C
Confidence 445677788886544 45679999999999998655443111122 256799998555 33 666666655 7
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc----c-----cccCCccc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----S-----ASLKPIKW 429 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~----~-----~~l~~~~~ 429 (819)
+++.+..|+......... ...+|++.|+..+..+ . +.+....+
T Consensus 151 lsv~~i~~~~~~~er~~~----------------------------y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~ 202 (830)
T PRK12904 151 LSVGVILSGMSPEERREA----------------------------YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGL 202 (830)
T ss_pred CeEEEEcCCCCHHHHHHh----------------------------cCCCeEEECCcchhhhhhhcccccchhhhccccc
Confidence 888888886555432222 3578999999888322 1 11223467
Q ss_pred eEEEecccccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhh----cccCCC-CCC------------ChHHH
Q 003450 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLM----HFLDAG-KFG------------SLEEF 492 (819)
Q Consensus 430 ~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll----~~l~~~-~~~------------~~~~f 492 (819)
.++|||||+++.=. .++.-+.+||.+- ...++|..+ ..|..+ .|. .....
T Consensus 203 ~~aIvDEaDsiLID-----------eArtpLiiSg~~~--~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~ 269 (830)
T PRK12904 203 NYAIVDEVDSILID-----------EARTPLIISGPAE--DSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEK 269 (830)
T ss_pred ceEEEechhhheec-----------cCCCceeeECCCC--cccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHH
Confidence 89999999987321 1233466676642 223344333 223221 010 00111
Q ss_pred HHHHhc---cchH---HHHHHHHHHHhhHHH-HHhhhhhhhcCCCceEEEEEecCCH-------HHHHHHHHHHH-----
Q 003450 493 QEEFKD---INQE---EQISRLHRMLAPHLL-RRVKKDVMKELPPKKELILRVELSS-------KQKEYYKAILT----- 553 (819)
Q Consensus 493 ~~~~~~---~~~~---~~~~~l~~~l~~~~l-rr~k~dv~~~lp~~~~~~v~~~ls~-------~q~~~y~~i~~----- 553 (819)
.+.+.. .... .....+...|..+.+ .+-..-+. ......+|- +.|. ...-+.+.+..
T Consensus 270 ~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV---~dg~V~ivD-e~TGR~~~gr~ws~GLHQaiEaKE~v~ 345 (830)
T PRK12904 270 AEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIV---KDGEVVIVD-EFTGRLMPGRRYSDGLHQAIEAKEGVK 345 (830)
T ss_pred HHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEE---ECCEEEEEE-CCCCccCCCCccchHHHHHHHHhcCCC
Confidence 111111 1111 112223333332222 22111111 111111111 1110 00001111100
Q ss_pred -----------------HHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHH
Q 003450 554 -----------------RNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKM 616 (819)
Q Consensus 554 -----------------~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~l 616 (819)
+.+..+...+|+. .....++.++.+-+.+.-+........+....-......|...+.+.
T Consensus 346 i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa---~te~~E~~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~ 422 (830)
T PRK12904 346 IQNENQTLASITFQNYFRMYEKLAGMTGTA---DTEAEEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVED 422 (830)
T ss_pred CCCCceeeeeeeHHHHHHhcchhcccCCCc---HHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHH
Confidence 0111222222222 22334566665554443222111000000000112245689999999
Q ss_pred HHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccC
Q 003450 617 MVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATA 696 (819)
Q Consensus 617 l~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a 696 (819)
+......|.+|||||......+.|...|...|+++..++|. ..+|+..|..|..+.. .++|+|+.+|+|+|+.-.
T Consensus 423 I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g---~VtIATNmAGRGtDI~Lg 497 (830)
T PRK12904 423 IKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPG---AVTIATNMAGRGTDIKLG 497 (830)
T ss_pred HHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCc---eEEEecccccCCcCccCC
Confidence 98888889999999999999999999999999999999995 7799999999966443 489999999999997642
Q ss_pred --------------------------------------CEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEE
Q 003450 697 --------------------------------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (819)
Q Consensus 697 --------------------------------------~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~ 730 (819)
=+||.-..+-|...+.|..||++|.|.......|
T Consensus 498 Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~ 569 (830)
T PRK12904 498 GNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY 569 (830)
T ss_pred CchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEE
Confidence 3889999999999999999999999998766544
No 98
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.73 E-value=6e-17 Score=166.70 Aligned_cols=307 Identities=14% Similarity=0.155 Sum_probs=198.5
Q ss_pred hhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHH-HHHHHHhcCC------CC-ceEEEecC-cchHHHHHHHHHHc--
Q 003450 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGER------IS-PHLVVAPL-STLRNWEREFATWA-- 356 (819)
Q Consensus 288 ~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i-~~l~~l~~~~------~~-~~LIv~P~-~ll~qW~~e~~~~~-- 356 (819)
-.|..++-.+ ..|++.+.-+-||+|||...+ -++..++... .+ ..+|+||+ .+..|-...+.+..
T Consensus 44 lIQs~aIpla----LEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~ 119 (569)
T KOG0346|consen 44 LIQSSAIPLA----LEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEY 119 (569)
T ss_pred hhhhcccchh----hcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHH
Confidence 3577777655 678899999999999998854 4455554321 12 57999996 66677777776653
Q ss_pred -C-CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccc---cCCccceE
Q 003450 357 -P-QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS---LKPIKWQC 431 (819)
Q Consensus 357 -p-~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~---l~~~~~~~ 431 (819)
+ .++++-+..+..+... +. .-...++|||+|+..+...... ...-...+
T Consensus 120 c~k~lr~~nl~s~~sdsv~-~~-------------------------~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~ 173 (569)
T KOG0346|consen 120 CSKDLRAINLASSMSDSVN-SV-------------------------ALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSF 173 (569)
T ss_pred HHHhhhhhhhhcccchHHH-HH-------------------------HHccCCCeEEeChHHHHHHHhhccchhhhheee
Confidence 2 3333333322221111 01 1124689999999988754221 22235678
Q ss_pred EEecccccccCcc--cHHHHHHHhcccC-cEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHH
Q 003450 432 MIVDEGHRLKNKD--SKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (819)
Q Consensus 432 lIvDEaH~~kn~~--s~~~~~l~~l~~~-~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l 508 (819)
+|+|||+-+-..+ -.+.+....++.. ..++||||- .+.+..|
T Consensus 174 LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl-----------------------------------~dDv~~L 218 (569)
T KOG0346|consen 174 LVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATL-----------------------------------SDDVQAL 218 (569)
T ss_pred EEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhh-----------------------------------hhHHHHH
Confidence 9999999875533 2233333344322 347777773 1222222
Q ss_pred HHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCC
Q 003450 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (819)
Q Consensus 509 ~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~ 588 (819)
+++ +|..|..+.-
T Consensus 219 KkL-------------------------------------------------------------------~l~nPviLkl 231 (569)
T KOG0346|consen 219 KKL-------------------------------------------------------------------FLHNPVILKL 231 (569)
T ss_pred HHH-------------------------------------------------------------------hccCCeEEEe
Confidence 222 2233333222
Q ss_pred CCCCccCcHHHH--HHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHH
Q 003450 589 VEPDIEDTNESF--KQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (819)
Q Consensus 589 ~~~~~~~~~~~~--~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~ 666 (819)
.+++...++... .-......|+..+..|+.--.- ..|.|||.+.++..-.|.-+|+..|++.+.++|.++...|..+
T Consensus 232 ~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI-~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hi 310 (569)
T KOG0346|consen 232 TEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLI-RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHI 310 (569)
T ss_pred ccccCCCcccceEEEEEeccchhHHHHHHHHHHHHh-cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhH
Confidence 222211111000 0011234566666666654333 3489999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCcEEEEeccc--------------------------c---------ccccCCcccCCEEEEeCCCCCcchH
Q 003450 667 IDRFNAKNSSRFCFLLSTR--------------------------A---------GGLGINLATADTVIIYDSDWNPHAD 711 (819)
Q Consensus 667 i~~F~~~~~~~~v~L~st~--------------------------a---------~~~GinL~~a~~VI~~d~~wnp~~~ 711 (819)
|++||.+- +-++|+|+ + .++|||++.+++||+||.|-++..|
T Consensus 311 i~QFNkG~---YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sY 387 (569)
T KOG0346|consen 311 IEQFNKGL---YDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSY 387 (569)
T ss_pred HHHhhCcc---eeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHH
Confidence 99998753 34677777 1 2579999999999999999999999
Q ss_pred HHHhHhhhhcCCCCcEEEE
Q 003450 712 LQAMARAHRLGQTNKVMIF 730 (819)
Q Consensus 712 ~Qa~gR~~R~Gq~~~V~v~ 730 (819)
++|+||..|-|.+..+.-|
T Consensus 388 IHRvGRTaRg~n~GtalSf 406 (569)
T KOG0346|consen 388 IHRVGRTARGNNKGTALSF 406 (569)
T ss_pred HHhccccccCCCCCceEEE
Confidence 9999999999887766443
No 99
>PRK14701 reverse gyrase; Provisional
Probab=99.73 E-value=3.2e-16 Score=194.73 Aligned_cols=298 Identities=14% Similarity=0.208 Sum_probs=184.8
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcC----C
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP----Q 358 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p----~ 358 (819)
.++++.|..++..+ ..+++.++.++||+|||...+.++..+ ......+|||+|+ .|+.|..+.+..++. +
T Consensus 78 ~~pt~iQ~~~i~~i----l~G~d~li~APTGsGKTl~~~~~al~~-~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~ 152 (1638)
T PRK14701 78 FEFWSIQKTWAKRI----LRGKSFSIVAPTGMGKSTFGAFIALFL-ALKGKKCYIILPTTLLVKQTVEKIESFCEKANLD 152 (1638)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEEcCCCCHHHHHHHHHHHH-HhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCc
Confidence 35889999998776 668899999999999998433322222 2223479999996 777899999988763 3
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH 438 (819)
..+..++|+..........+- .....++|+|+|++.+......+...+++++||||||
T Consensus 153 v~v~~~~g~~s~~e~~~~~~~----------------------l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD 210 (1638)
T PRK14701 153 VRLVYYHSNLRKKEKEEFLER----------------------IENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVD 210 (1638)
T ss_pred eeEEEEeCCCCHHHHHHHHHH----------------------HhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECce
Confidence 566777777554432211110 0123589999999988754443333678999999999
Q ss_pred cccC-------------cccHHHH----HHH----------------------hcccCc--EEEEeCCCCCC-ChhHHHh
Q 003450 439 RLKN-------------KDSKLFS----SLK----------------------QYSTRH--RVLLTGTPLQN-NLDELFM 476 (819)
Q Consensus 439 ~~kn-------------~~s~~~~----~l~----------------------~l~~~~--~llLTgTP~~n-~~~el~~ 476 (819)
.+-. ....... .+. .+.... .++.|||.-.. ....++
T Consensus 211 ~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~- 289 (1638)
T PRK14701 211 AFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLY- 289 (1638)
T ss_pred eccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHh-
Confidence 9842 1111111 110 111122 35568885211 100000
Q ss_pred hhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHH
Q 003450 477 LMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNY 556 (819)
Q Consensus 477 ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~ 556 (819)
+..+ .-++...-+.
T Consensus 290 ------------------------------------~~~l----~f~v~~~~~~-------------------------- 303 (1638)
T PRK14701 290 ------------------------------------RELL----GFEVGSGRSA-------------------------- 303 (1638)
T ss_pred ------------------------------------hcCe----EEEecCCCCC--------------------------
Confidence 0000 0000000000
Q ss_pred HHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhH
Q 003450 557 QILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM 636 (819)
Q Consensus 557 ~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ 636 (819)
++.+ .|.|... ....| ..|.+++..+ |...||||+....
T Consensus 304 -------------------lr~i-~~~yi~~-----------------~~~~k-~~L~~ll~~~---g~~gIVF~~t~~~ 342 (1638)
T PRK14701 304 -------------------LRNI-VDVYLNP-----------------EKIIK-EHVRELLKKL---GKGGLIFVPIDEG 342 (1638)
T ss_pred -------------------CCCc-EEEEEEC-----------------CHHHH-HHHHHHHHhC---CCCeEEEEecccc
Confidence 0000 0000000 00112 2344555443 6789999997654
Q ss_pred ---HHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEecc----ccccccCCccc-CCEEEEeCCCC--
Q 003450 637 ---LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST----RAGGLGINLAT-ADTVIIYDSDW-- 706 (819)
Q Consensus 637 ---ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st----~a~~~GinL~~-a~~VI~~d~~w-- 706 (819)
++.|.++|...|+++..++|+ |.+.+++|.+++.. +||+| ..+++|||++. +.+|||||.|-
T Consensus 343 ~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~---VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~ 414 (1638)
T PRK14701 343 AEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEID---YLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFR 414 (1638)
T ss_pred chHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCC---EEEEecCCCCeeEecCccCCccCEEEEeCCCCCC
Confidence 589999999999999999984 88999999886654 78888 47889999998 99999999997
Q ss_pred -CcchHHHHh-------------HhhhhcCCC
Q 003450 707 -NPHADLQAM-------------ARAHRLGQT 724 (819)
Q Consensus 707 -np~~~~Qa~-------------gR~~R~Gq~ 724 (819)
|...+.|.. ||++|-|..
T Consensus 415 ~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 415 FRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred cchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 666555554 999998864
No 100
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.73 E-value=5.3e-16 Score=182.57 Aligned_cols=108 Identities=18% Similarity=0.176 Sum_probs=91.5
Q ss_pred CceEEEEecchhHHHHHHHHHhh---CCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEE
Q 003450 624 GHRVLIYSQFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (819)
Q Consensus 624 g~kvlIFs~~~~~ld~L~~~L~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI 700 (819)
+.++|||++....++.+.+.|.. .++.+..++|+++.++|.++++.|.++ ...+|++|+.+++|||++++++||
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G---~rkVlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQG---RRKVVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccC---CeEEEEecchHhhcccccCceEEE
Confidence 56899999999999999999976 488999999999999999999999654 344899999999999999999999
Q ss_pred EeCCC----CCcch--------------HHHHhHhhhhcCCCCcEEEEEEEeCCC
Q 003450 701 IYDSD----WNPHA--------------DLQAMARAHRLGQTNKVMIFRLITRGS 737 (819)
Q Consensus 701 ~~d~~----wnp~~--------------~~Qa~gR~~R~Gq~~~V~v~~li~~~T 737 (819)
.++.+ +||.. +.||.||++|. ++-..|+|+++..
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 98865 45554 78999999997 4556788887653
No 101
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.73 E-value=4.7e-15 Score=148.60 Aligned_cols=312 Identities=17% Similarity=0.193 Sum_probs=208.3
Q ss_pred CCCCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCC
Q 003450 281 LSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM 359 (819)
Q Consensus 281 ~~~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~ 359 (819)
..+++|.|+|..+.+.+...+.+....|+.+.+|+|||-+....+...++.+ +.+.|..|. .++-.-...+..-+++.
T Consensus 93 ~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G-~~vciASPRvDVclEl~~Rlk~aF~~~ 171 (441)
T COG4098 93 QWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG-GRVCIASPRVDVCLELYPRLKQAFSNC 171 (441)
T ss_pred eeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC-CeEEEecCcccchHHHHHHHHHhhccC
Confidence 4568999999999999999999999999999999999988877777766654 589999995 66666677777778788
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEeccccc
Q 003450 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHR 439 (819)
Q Consensus 360 ~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~ 439 (819)
.+...+|.....- ..+=||-||++.++-.. .||++||||.+-
T Consensus 172 ~I~~Lyg~S~~~f--------------------------------r~plvVaTtHQLlrFk~------aFD~liIDEVDA 213 (441)
T COG4098 172 DIDLLYGDSDSYF--------------------------------RAPLVVATTHQLLRFKQ------AFDLLIIDEVDA 213 (441)
T ss_pred CeeeEecCCchhc--------------------------------cccEEEEehHHHHHHHh------hccEEEEecccc
Confidence 8888888866531 12336667777765322 478999999998
Q ss_pred ccC-cccHHHHHHHhc--ccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhH-
Q 003450 440 LKN-KDSKLFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPH- 515 (819)
Q Consensus 440 ~kn-~~s~~~~~l~~l--~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~- 515 (819)
+-= .+..+..++..- .....+.|||||-..--.++ ++..+...
T Consensus 214 FP~~~d~~L~~Av~~ark~~g~~IylTATp~k~l~r~~---------------------------------~~g~~~~~k 260 (441)
T COG4098 214 FPFSDDQSLQYAVKKARKKEGATIYLTATPTKKLERKI---------------------------------LKGNLRILK 260 (441)
T ss_pred ccccCCHHHHHHHHHhhcccCceEEEecCChHHHHHHh---------------------------------hhCCeeEee
Confidence 732 233344455443 24568999999921000000 00000000
Q ss_pred HHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccC
Q 003450 516 LLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (819)
Q Consensus 516 ~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~ 595 (819)
+-+|.- ...||-....++ .+.-+. +
T Consensus 261 lp~RfH---~~pLpvPkf~w~----~~~~k~--------------------------l---------------------- 285 (441)
T COG4098 261 LPARFH---GKPLPVPKFVWI----GNWNKK--------------------------L---------------------- 285 (441)
T ss_pred cchhhc---CCCCCCCceEEe----ccHHHH--------------------------h----------------------
Confidence 000000 001222211111 000000 0
Q ss_pred cHHHHHHhhhcCchHH-HHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeE---EEEeccCChHHHHHHHHHhc
Q 003450 596 TNESFKQLLESSGKLQ-LLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQY---ERIDGKVGGAERQIRIDRFN 671 (819)
Q Consensus 596 ~~~~~~~l~~~s~Kl~-~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~---~~l~G~~~~~~R~~~i~~F~ 671 (819)
...|+. .|...|++....|..++||...+.+++-+...|+. ++++ ..++. ....|.+.+.+|+
T Consensus 286 ----------~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~-~~~~~~i~~Vhs--~d~~R~EkV~~fR 352 (441)
T COG4098 286 ----------QRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKK-KLPKETIASVHS--EDQHRKEKVEAFR 352 (441)
T ss_pred ----------hhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHh-hCCccceeeeec--cCccHHHHHHHHH
Confidence 112333 56777888888899999999999999999999853 2333 34443 2457899999997
Q ss_pred CCCCCcEEEEeccccccccCCcccCCEEEEeCCC--CCcchHHHHhHhhhhcCCCCcEEEEEEEeC
Q 003450 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD--WNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (819)
Q Consensus 672 ~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~--wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~ 735 (819)
++. +-+|++|..+.+|+.++.+++.++=.-. ++-+..+|..||++|--....-.|+.|-.-
T Consensus 353 ~G~---~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G 415 (441)
T COG4098 353 DGK---ITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYG 415 (441)
T ss_pred cCc---eEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEecc
Confidence 754 4589999999999999999998886554 888999999999999765543344444333
No 102
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=5.4e-17 Score=173.93 Aligned_cols=313 Identities=21% Similarity=0.253 Sum_probs=200.2
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHH-HHHHhcC-----CCC-ceEEEecC-cchHHHHHHHHHHc
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGE-----RIS-PHLVVAPL-STLRNWEREFATWA 356 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~-l~~l~~~-----~~~-~~LIv~P~-~ll~qW~~e~~~~~ 356 (819)
...|-|..++-.+ ..+++++-+.++|+|||+..+.- +..+... ..+ ..+|+.|. .+..|-.+|+.++.
T Consensus 158 ~Pt~iq~~aipvf----l~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~ 233 (593)
T KOG0344|consen 158 EPTPIQKQAIPVF----LEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYS 233 (593)
T ss_pred CCCcccchhhhhh----hcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcC
Confidence 4567888887665 67899999999999999886554 3444322 123 88999996 78888999998876
Q ss_pred CCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccc----cCCccceEE
Q 003450 357 PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS----LKPIKWQCM 432 (819)
Q Consensus 357 p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~----l~~~~~~~l 432 (819)
-+ .|+. .+. ..+.++..+.. ........++++++.|+..+...... +.-.....+
T Consensus 234 ~~------~~t~-~~a----~~~~~~~~~~q----------k~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~l 292 (593)
T KOG0344|consen 234 ID------EGTS-LRA----AQFSKPAYPSQ----------KPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWL 292 (593)
T ss_pred CC------CCCc-hhh----hhcccccchhh----------ccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeE
Confidence 21 0111 000 01111111100 00111234789999999988765433 233355679
Q ss_pred EecccccccCccc---HHHHHHHhcccC--cEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHH
Q 003450 433 IVDEGHRLKNKDS---KLFSSLKQYSTR--HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (819)
Q Consensus 433 IvDEaH~~kn~~s---~~~~~l~~l~~~--~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~ 507 (819)
|+|||.++.++.. +....+....++ ++=++|||- ...+++
T Consensus 293 V~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~-----------------------------------~~~VEE 337 (593)
T KOG0344|consen 293 VVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATI-----------------------------------SVYVEE 337 (593)
T ss_pred eechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccc-----------------------------------cHHHHH
Confidence 9999999977621 111111111111 222344441 111222
Q ss_pred HHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccC
Q 003450 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (819)
Q Consensus 508 l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~ 587 (819)
+...+.. + ...+.+...+.+... +...+. +
T Consensus 338 ~~~~i~~--------~---------~~~vivg~~~sa~~~------------------------V~Qelv--------F- 367 (593)
T KOG0344|consen 338 WAELIKS--------D---------LKRVIVGLRNSANET------------------------VDQELV--------F- 367 (593)
T ss_pred HHHHhhc--------c---------ceeEEEecchhHhhh------------------------hhhhhe--------e-
Confidence 2211111 1 112223333322000 000010 0
Q ss_pred CCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHH-hhCCCeEEEEeccCChHHHHHH
Q 003450 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL-TFKKWQYERIDGKVGGAERQIR 666 (819)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L-~~~g~~~~~l~G~~~~~~R~~~ 666 (819)
.....+|+..+.+++.... .-.+|||.|.......|...| ...++.+..++|..++.+|.+.
T Consensus 368 ---------------~gse~~K~lA~rq~v~~g~--~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~ 430 (593)
T KOG0344|consen 368 ---------------CGSEKGKLLALRQLVASGF--KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDET 430 (593)
T ss_pred ---------------eecchhHHHHHHHHHhccC--CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHH
Confidence 0124567778888887643 458999999999999999999 7889999999999999999999
Q ss_pred HHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcE
Q 003450 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (819)
Q Consensus 667 i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V 727 (819)
+++|+.+. +-+|++|+..++|||+.+++.||+||.|-+-..|++|+||++|.|+....
T Consensus 431 ~~~FR~g~---IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~A 488 (593)
T KOG0344|consen 431 MERFRIGK---IWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKA 488 (593)
T ss_pred HHHHhccC---eeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcce
Confidence 99997643 44899999999999999999999999999999999999999999987644
No 103
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.71 E-value=2.4e-16 Score=167.15 Aligned_cols=326 Identities=18% Similarity=0.235 Sum_probs=214.4
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhcCCCCceEEEecCcch-HHHHHHHHHHcC--CC
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAP--QM 359 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~-i~~l~~l~~~~~~~~LIv~P~~ll-~qW~~e~~~~~p--~~ 359 (819)
.+|.|-|.-+|. ..+..|.+.++...|++|||+++ +|-+..++.. .+++|++||...+ .|=.++|.+-+. ++
T Consensus 215 ~eLlPVQ~laVe---~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-g~KmlfLvPLVALANQKy~dF~~rYs~Lgl 290 (830)
T COG1202 215 EELLPVQVLAVE---AGLLEGENLLVVSATASGKTLIGELAGIPRLLSG-GKKMLFLVPLVALANQKYEDFKERYSKLGL 290 (830)
T ss_pred ceecchhhhhhh---hccccCCceEEEeccCCCcchHHHhhCcHHHHhC-CCeEEEEehhHHhhcchHHHHHHHhhcccc
Confidence 469999999986 44578999999999999999875 5555555443 3599999997555 555566765543 45
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc---ccccCCccceEEEecc
Q 003450 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---SASLKPIKWQCMIVDE 436 (819)
Q Consensus 360 ~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~---~~~l~~~~~~~lIvDE 436 (819)
.+.+-.|...-+.. + .+ .......+.|||+.||+-+.-. -..+ -+...|||||
T Consensus 291 kvairVG~srIk~~----~-----~p-------------v~~~t~~dADIIVGTYEGiD~lLRtg~~l--gdiGtVVIDE 346 (830)
T COG1202 291 KVAIRVGMSRIKTR----E-----EP-------------VVVDTSPDADIIVGTYEGIDYLLRTGKDL--GDIGTVVIDE 346 (830)
T ss_pred eEEEEechhhhccc----C-----Cc-------------cccCCCCCCcEEEeechhHHHHHHcCCcc--cccceEEeee
Confidence 55555565433310 0 00 0111235789999999976421 1223 2567999999
Q ss_pred cccccCc--ccH---HHHHHHhc-ccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHH
Q 003450 437 GHRLKNK--DSK---LFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (819)
Q Consensus 437 aH~~kn~--~s~---~~~~l~~l-~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~ 510 (819)
.|.+... +.. +...++.+ .....++||||- .|+.|+...+..--. .|
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATV--gNp~elA~~l~a~lV-~y------------------------ 399 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATV--GNPEELAKKLGAKLV-LY------------------------ 399 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCCCCeEEEEEeec--CChHHHHHHhCCeeE-ee------------------------
Confidence 9999652 233 33334444 346789999995 444444433321000 00
Q ss_pred HHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCC
Q 003450 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (819)
Q Consensus 511 ~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~ 590 (819)
...--|...+.+++.-
T Consensus 400 --------------~~RPVplErHlvf~~~-------------------------------------------------- 415 (830)
T COG1202 400 --------------DERPVPLERHLVFARN-------------------------------------------------- 415 (830)
T ss_pred --------------cCCCCChhHeeeeecC--------------------------------------------------
Confidence 0000112222332221
Q ss_pred CCccCcHHHHHHhhhcCchHHHHHHHHHHHHh----cC--ceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHH
Q 003450 591 PDIEDTNESFKQLLESSGKLQLLDKMMVKLKE----QG--HRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ 664 (819)
Q Consensus 591 ~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~----~g--~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~ 664 (819)
.+.|...+.++++.-.. .| .++|||++++.-...|.++|..+|++..-+|++++..+|+
T Consensus 416 ---------------e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk 480 (830)
T COG1202 416 ---------------ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERK 480 (830)
T ss_pred ---------------chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHH
Confidence 22344444444433221 12 3799999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEE----eC-CCCCcchHHHHhHhhhhcCCCCcEEEEEEEeC----
Q 003450 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YD-SDWNPHADLQAMARAHRLGQTNKVMIFRLITR---- 735 (819)
Q Consensus 665 ~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~----~d-~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~---- 735 (819)
.+-..|.+..- ..+++|.|.|.|+|+++. .||| +- -+-+|..+.|..||++|.+=...-.||-++-.
T Consensus 481 ~vE~~F~~q~l---~~VVTTAAL~AGVDFPAS-QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y 556 (830)
T COG1202 481 SVERAFAAQEL---AAVVTTAALAAGVDFPAS-QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKY 556 (830)
T ss_pred HHHHHHhcCCc---ceEeehhhhhcCCCCchH-HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhh
Confidence 99999976543 478999999999999964 3443 23 35599999999999999998877778877754
Q ss_pred -----CCHHHHHHHHHH
Q 003450 736 -----GSIEERMMQMTK 747 (819)
Q Consensus 736 -----~TvEe~i~~~~~ 747 (819)
+|-||.-+.+++
T Consensus 557 ~~~m~~TEdevA~kLL~ 573 (830)
T COG1202 557 HASMEETEDEVAFKLLE 573 (830)
T ss_pred cccccccHHHHHHHHhc
Confidence 466666555544
No 104
>PRK09694 helicase Cas3; Provisional
Probab=99.71 E-value=2.2e-15 Score=177.21 Aligned_cols=357 Identities=16% Similarity=0.143 Sum_probs=190.5
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEecC-cchHHHHHHHHH----Hc
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPL-STLRNWEREFAT----WA 356 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~-~~~~LIv~P~-~ll~qW~~e~~~----~~ 356 (819)
+..++|+|..+.+.. ..++-.||.++||+|||-.++.++..+...+ ...+++..|. .+..+-...+.. .+
T Consensus 284 ~~~p~p~Q~~~~~~~----~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 284 GYQPRQLQTLVDALP----LQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCCChHHHHHHHhhc----cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 467999999874321 3456689999999999999999888776543 4589999997 455555555543 44
Q ss_pred CCCeEEEEecChhHHHHHHHhhhc-CCCCccccccccCCccccccccccccccEEEchhhHHhhcc-----cccCCc--c
Q 003450 357 PQMNVVMYVGTSQARNIIREYEFY-FPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS-----ASLKPI--K 428 (819)
Q Consensus 357 p~~~v~~~~g~~~~r~~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~-----~~l~~~--~ 428 (819)
++.++...||............-. .........................-..++|+|.+.+.... ..++.+ .
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 566788888876533221111000 00000000000000000001111233579999998775321 111111 2
Q ss_pred ceEEEecccccccCcccHH-HHHHHhc--ccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHH
Q 003450 429 WQCMIVDEGHRLKNKDSKL-FSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (819)
Q Consensus 429 ~~~lIvDEaH~~kn~~s~~-~~~l~~l--~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~ 505 (819)
-.+|||||+|-+-.....+ ...+..+ .....|+||||+-..-..+|......-.+
T Consensus 440 ~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~---------------------- 497 (878)
T PRK09694 440 RSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDP---------------------- 497 (878)
T ss_pred cCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccc----------------------
Confidence 2489999999983322222 2233322 23468999999722111111110000000
Q ss_pred HHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcc
Q 003450 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (819)
Q Consensus 506 ~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l 585 (819)
.......|-... +. ... . . .. .+..|+..
T Consensus 498 ----------------~~~~~~YPlvt~----~~--~~~------~-------------~---------~~-~~~~~~~~ 526 (878)
T PRK09694 498 ----------------VELSSAYPLITW----RG--VNG------A-------------Q---------RF-DLSAHPEQ 526 (878)
T ss_pred ----------------cccccccccccc----cc--ccc------c-------------e---------ee-eccccccc
Confidence 000000000000 00 000 0 0 00 00000000
Q ss_pred cCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCC---CeEEEEeccCChHH
Q 003450 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKK---WQYERIDGKVGGAE 662 (819)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g---~~~~~l~G~~~~~~ 662 (819)
... ..... ... ...-.......++..++.. ...|+++|||++.+..+..+.+.|...+ .++..++|.++..+
T Consensus 527 ~~~-~~~v~-v~~--~~~~~~~~~~~~l~~i~~~-~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~d 601 (878)
T PRK09694 527 LPA-RFTIQ-LEP--ICLADMLPDLTLLQRMIAA-ANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLND 601 (878)
T ss_pred cCc-ceEEE-EEe--eccccccCHHHHHHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Confidence 000 00000 000 0000001112233333333 3468899999999999999999998664 68999999999998
Q ss_pred H----HHHHHHh-cCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCC
Q 003450 663 R----QIRIDRF-NAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT 724 (819)
Q Consensus 663 R----~~~i~~F-~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~ 724 (819)
| +++++.| +++......+||+|.+...|||+ .+|.+|....| ...++||+||++|.|..
T Consensus 602 R~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 602 RREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred HHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 8 4678888 33322223479999999999999 57988886665 56899999999999874
No 105
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.71 E-value=7e-17 Score=159.55 Aligned_cols=165 Identities=27% Similarity=0.397 Sum_probs=110.4
Q ss_pred CCCchhHHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCC
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM 359 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~---~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~ 359 (819)
.+|||||.+++..+...+... ++++|.++||+|||++++.++..+.. ++||+||. +++.||..+|..+.+..
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~~~~~~~~~ 77 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDEFDDFGSEK 77 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHHHHHHSTTS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHHHHHhhhhh
Confidence 469999999999998777654 89999999999999999998888876 89999997 88899999998887654
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccc-------------cCC
Q 003450 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS-------------LKP 426 (819)
Q Consensus 360 ~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~-------------l~~ 426 (819)
............. ......................++++++++.+...... ...
T Consensus 78 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 144 (184)
T PF04851_consen 78 YNFFEKSIKPAYD-------------SKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLK 144 (184)
T ss_dssp EEEEE--GGGCCE--------------SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGG
T ss_pred hhhcccccccccc-------------cccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhcc
Confidence 4433221110000 00000000000001112234678999999998754321 222
Q ss_pred ccceEEEecccccccCcccHHHHHHHhcccCcEEEEeCCCC
Q 003450 427 IKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPL 467 (819)
Q Consensus 427 ~~~~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~ 467 (819)
..+++||+||||++.+... ++.+......++|+|||||.
T Consensus 145 ~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 145 NKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp GSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred ccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 3678999999999965432 56666688889999999994
No 106
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=1.5e-15 Score=174.12 Aligned_cols=387 Identities=15% Similarity=0.162 Sum_probs=225.0
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcch----HHHHHHHHHHcCC
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL----RNWEREFATWAPQ 358 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll----~qW~~e~~~~~p~ 358 (819)
|...++-|+-|.--| +.|-|.-+.||.|||+++...+... ......+.||+|+.-| ..|...+..|. +
T Consensus 80 gm~~ydVQliGgl~L------~~G~IaEm~TGEGKTL~a~lp~~l~-al~g~~VhIvT~ndyLA~RD~e~m~~l~~~l-G 151 (908)
T PRK13107 80 EMRHFDVQLLGGMVL------DSNRIAEMRTGEGKTLTATLPAYLN-ALTGKGVHVITVNDYLARRDAENNRPLFEFL-G 151 (908)
T ss_pred CCCcCchHHhcchHh------cCCccccccCCCCchHHHHHHHHHH-HhcCCCEEEEeCCHHHHHHHHHHHHHHHHhc-C
Confidence 344667788775433 5678999999999999865444322 2233469999998555 34888888887 8
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc----ccc-----cCCccc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SAS-----LKPIKW 429 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~----~~~-----l~~~~~ 429 (819)
+.+.+..+........ ..+.++|+.+|...+.-+ .-. .-...+
T Consensus 152 lsv~~i~~~~~~~~r~----------------------------~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~ 203 (908)
T PRK13107 152 LTVGINVAGLGQQEKK----------------------------AAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPL 203 (908)
T ss_pred CeEEEecCCCCHHHHH----------------------------hcCCCCeEEeCCCcccchhhhccCccchhhhhcccc
Confidence 9998887765542211 224678999998877322 111 112467
Q ss_pred eEEEecccccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhc----ccCCC------------CCC------
Q 003450 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH----FLDAG------------KFG------ 487 (819)
Q Consensus 430 ~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~----~l~~~------------~~~------ 487 (819)
.++||||++.+.-.. ++--|.+||.+ ... .++|..++ -|... .|.
T Consensus 204 ~~aIvDEvDsiLiDE-----------ArtPLIISg~~-~~~-~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~ 270 (908)
T PRK13107 204 HYALIDEVDSILIDE-----------ARTPLIISGAA-EDS-SELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAK 270 (908)
T ss_pred ceeeecchhhhcccc-----------CCCceeecCCC-ccc-hHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCC
Confidence 899999999874322 33456777754 222 44444332 12110 110
Q ss_pred ------ChHHHHHHHh---c-------cc---hHHHHHHHHHHHhhHHH-HHhhhhhhhcCCCceEEEEE---------e
Q 003450 488 ------SLEEFQEEFK---D-------IN---QEEQISRLHRMLAPHLL-RRVKKDVMKELPPKKELILR---------V 538 (819)
Q Consensus 488 ------~~~~f~~~~~---~-------~~---~~~~~~~l~~~l~~~~l-rr~k~dv~~~lp~~~~~~v~---------~ 538 (819)
....+.+.+. . +- .......+...|+.+.+ .+-..-+.. .....+|- .
T Consensus 271 ~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~---dg~V~IVDe~TGRim~gr 347 (908)
T PRK13107 271 QVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQ---DNEVIIVDEHTGRTMPGR 347 (908)
T ss_pred eeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEE---CCEEEEEECCCCCCCCCC
Confidence 0011111110 0 00 00112223333333322 111111110 01111110 0
Q ss_pred cCCHHHHHH--------------------HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccCcHH
Q 003450 539 ELSSKQKEY--------------------YKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNE 598 (819)
Q Consensus 539 ~ls~~q~~~--------------------y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~~~ 598 (819)
..++-..++ |..++ +.+..+...+|+..+ ...++.++.+-+.+.-+........+.
T Consensus 348 rwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfF-r~Y~kL~GMTGTa~t---e~~Ef~~iY~l~Vv~IPTnkp~~R~d~ 423 (908)
T PRK13107 348 RWSEGLHQAVEAKEGVHIQNENQTLASITFQNYF-RQYEKLAGMTGTADT---EAFEFQHIYGLDTVVVPTNRPMVRKDM 423 (908)
T ss_pred ccchHHHHHHHHhcCCCCCCCceeeeeehHHHHH-HhhhHhhcccCCChH---HHHHHHHHhCCCEEECCCCCCccceeC
Confidence 011110111 11111 112223333333322 223455555444332221111000000
Q ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcE
Q 003450 599 SFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRF 678 (819)
Q Consensus 599 ~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~ 678 (819)
...-......|..++.+-+..+.+.|.+|||||......+.|..+|...|+++..+++.....+++.+...|+.+.
T Consensus 424 ~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~---- 499 (908)
T PRK13107 424 ADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA---- 499 (908)
T ss_pred CCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc----
Confidence 0011122456888888889999999999999999999999999999999999999999999999999999997643
Q ss_pred EEEeccccccccCCccc-------------------------------------CCEEEEeCCCCCcchHHHHhHhhhhc
Q 003450 679 CFLLSTRAGGLGINLAT-------------------------------------ADTVIIYDSDWNPHADLQAMARAHRL 721 (819)
Q Consensus 679 v~L~st~a~~~GinL~~-------------------------------------a~~VI~~d~~wnp~~~~Qa~gR~~R~ 721 (819)
++|+|+.+|+|+|+.= .=+||.-..+-|...+.|..||++|.
T Consensus 500 -VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQ 578 (908)
T PRK13107 500 -VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQ 578 (908)
T ss_pred -EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccC
Confidence 7999999999999762 23899999999999999999999999
Q ss_pred CCCCcEEEE
Q 003450 722 GQTNKVMIF 730 (819)
Q Consensus 722 Gq~~~V~v~ 730 (819)
|.......|
T Consensus 579 GDPGss~f~ 587 (908)
T PRK13107 579 GDAGSSRFY 587 (908)
T ss_pred CCCCceeEE
Confidence 998655443
No 107
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.70 E-value=1.2e-15 Score=179.98 Aligned_cols=110 Identities=17% Similarity=0.166 Sum_probs=92.0
Q ss_pred cCceEEEEecchhHHHHHHHHHhh---CCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEE
Q 003450 623 QGHRVLIYSQFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (819)
Q Consensus 623 ~g~kvlIFs~~~~~ld~L~~~L~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~V 699 (819)
.+..+|||++....++.+.+.|.. .++.+..++|+++.++|++++..|.++ ...+|++|+.+++||+++++++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G---~rkVlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAG---RRKVVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCC---CeEEEEecchHHhcccccCceEE
Confidence 357899999999999999999986 588899999999999999999988543 44589999999999999999999
Q ss_pred EEeCCC----CCc--------------chHHHHhHhhhhcCCCCcEEEEEEEeCCCH
Q 003450 700 IIYDSD----WNP--------------HADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (819)
Q Consensus 700 I~~d~~----wnp--------------~~~~Qa~gR~~R~Gq~~~V~v~~li~~~Tv 738 (819)
|.++.+ |+| ..+.||.||++|. .+-.+|+|+++...
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 996654 222 3688999999997 36678899887644
No 108
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.70 E-value=2.4e-16 Score=179.65 Aligned_cols=315 Identities=18% Similarity=0.252 Sum_probs=210.3
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHH-HHHHhc-----CCCCc-eEEEecC-cchHHHHHHHHHH
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFG-----ERISP-HLVVAPL-STLRNWEREFATW 355 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~-l~~l~~-----~~~~~-~LIv~P~-~ll~qW~~e~~~~ 355 (819)
..++|.|..|+-.+ ..|+.+|-.+.+|+|||+..+.. +.+... .+.|| .||+||+ .+..|-.+++.+|
T Consensus 386 ~k~~~IQ~qAiP~I----msGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf 461 (997)
T KOG0334|consen 386 EKPTPIQAQAIPAI----MSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKF 461 (997)
T ss_pred CCCcchhhhhcchh----ccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHH
Confidence 46899999998876 78999999999999999887443 333322 23355 5999997 6667756665555
Q ss_pred c--CCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhh----ccccc-CCcc
Q 003450 356 A--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----DSASL-KPIK 428 (819)
Q Consensus 356 ~--p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~----~~~~l-~~~~ 428 (819)
. -++.++..+|.......+.+. + -...|+|+|++.+.. ....+ .-..
T Consensus 462 ~k~l~ir~v~vygg~~~~~qiael-------------------------k-Rg~eIvV~tpGRmiD~l~~n~grvtnlrR 515 (997)
T KOG0334|consen 462 LKLLGIRVVCVYGGSGISQQIAEL-------------------------K-RGAEIVVCTPGRMIDILCANSGRVTNLRR 515 (997)
T ss_pred HhhcCceEEEecCCccHHHHHHHH-------------------------h-cCCceEEeccchhhhhHhhcCCccccccc
Confidence 4 367777777766655555443 1 136789999887643 12222 2234
Q ss_pred ceEEEeccccccc--CcccHHHHHHHhcccCc-EEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHH
Q 003450 429 WQCMIVDEGHRLK--NKDSKLFSSLKQYSTRH-RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (819)
Q Consensus 429 ~~~lIvDEaH~~k--n~~s~~~~~l~~l~~~~-~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~ 505 (819)
..++|+|||+++- ....+.+..+..+...+ .++.|||- ...+
T Consensus 516 ~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatf-----------------------------------pr~m 560 (997)
T KOG0334|consen 516 VTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATF-----------------------------------PRSM 560 (997)
T ss_pred cceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhh-----------------------------------hHHH
Confidence 5689999999983 22333334444443222 23333331 0001
Q ss_pred HHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcc
Q 003450 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (819)
Q Consensus 506 ~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l 585 (819)
. -+...++. +|.. .++ . ++..+
T Consensus 561 ~------------~la~~vl~--~Pve-iiv--~--------~~svV--------------------------------- 582 (997)
T KOG0334|consen 561 E------------ALARKVLK--KPVE-IIV--G--------GRSVV--------------------------------- 582 (997)
T ss_pred H------------HHHHHhhc--CCee-EEE--c--------cceeE---------------------------------
Confidence 1 11111111 2222 111 1 00000
Q ss_pred cCCCCCCccCcHHHHHHhhh-cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHH
Q 003450 586 LEGVEPDIEDTNESFKQLLE-SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ 664 (819)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~-~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~ 664 (819)
........ .... .+.|+..|.+||....+ ..++|||++....+|.|.+-|...||....++|..++.+|.
T Consensus 583 ~k~V~q~v--------~V~~~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~ 653 (997)
T KOG0334|consen 583 CKEVTQVV--------RVCAIENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRS 653 (997)
T ss_pred eccceEEE--------EEecCchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHH
Confidence 00000000 0011 35688888888887766 56899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeC
Q 003450 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (819)
Q Consensus 665 ~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~ 735 (819)
..|..|.++.. .+|++|..++.|||+.....||+||.+--...|.+|.||++|.|.+. .-|.|++.
T Consensus 654 sti~dfK~~~~---~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 654 STIEDFKNGVV---NLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hHHHHHhccCc---eEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 99999977544 48999999999999999999999999988889999999999999877 44556655
No 109
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=2.8e-16 Score=160.40 Aligned_cols=313 Identities=18% Similarity=0.260 Sum_probs=208.5
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC--CCceEEEecCcchHHH-HHHHHHHcC--CC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNW-EREFATWAP--QM 359 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~--~~~~LIv~P~~ll~qW-~~e~~~~~p--~~ 359 (819)
++..-|..|+--+ ..|.+++.....|+|||.+....+.....-. ...+||++|...+.+. ......++. +.
T Consensus 48 kPSaIQqraI~p~----i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~ 123 (397)
T KOG0327|consen 48 KPSAIQQRAILPC----IKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDV 123 (397)
T ss_pred CchHHHhcccccc----ccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccce
Confidence 4556788877544 6789999999999999988544444443322 2378999998766554 444455554 34
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhh--cccccCCccceEEEeccc
Q 003450 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL--DSASLKPIKWQCMIVDEG 437 (819)
Q Consensus 360 ~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~--~~~~l~~~~~~~lIvDEa 437 (819)
++....|...-+..-. .......+|++.|++.+.. +...+..-...+.|+|||
T Consensus 124 ~v~~~igg~~~~~~~~-------------------------~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEa 178 (397)
T KOG0327|consen 124 SVHACIGGTNVRREDQ-------------------------ALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEA 178 (397)
T ss_pred eeeeecCcccchhhhh-------------------------hhhccCceeecCCchhHHHhhccccccccceeEEeecch
Confidence 5555555433321111 1122457899999977653 233556667789999999
Q ss_pred ccccCc--ccHHHHHHHhcccC-cEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhh
Q 003450 438 HRLKNK--DSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (819)
Q Consensus 438 H~~kn~--~s~~~~~l~~l~~~-~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~ 514 (819)
...... ..+.+..+..++.+ ..+++|||-. .|+. .+
T Consensus 179 DEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p----~~vl----------------------------------~v--- 217 (397)
T KOG0327|consen 179 DEMLSRGFKDQIYDIFQELPSDVQVVLLSATMP----SDVL----------------------------------EV--- 217 (397)
T ss_pred HhhhccchHHHHHHHHHHcCcchhheeecccCc----HHHH----------------------------------HH---
Confidence 998654 45566666666544 6688999931 0000 00
Q ss_pred HHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCcc
Q 003450 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (819)
Q Consensus 515 ~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~ 594 (819)
++ .++.. ...+.+.-.+.+.+ -.++. |..
T Consensus 218 -----t~-----~f~~~-pv~i~vkk~~ltl~----------------------------gikq~----~i~-------- 246 (397)
T KOG0327|consen 218 -----TK-----KFMRE-PVRILVKKDELTLE----------------------------GIKQF----YIN-------- 246 (397)
T ss_pred -----HH-----HhccC-ceEEEecchhhhhh----------------------------heeee----eee--------
Confidence 00 00000 00111110000000 00000 000
Q ss_pred CcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCC
Q 003450 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (819)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~ 674 (819)
+....|+..|..+.. +-...+||++...-++.|.+.|...|+....++|.+.+.+|..++..|+.+.
T Consensus 247 ---------v~k~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gs 313 (397)
T KOG0327|consen 247 ---------VEKEEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGS 313 (397)
T ss_pred ---------ccccccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCC
Confidence 001227777888777 3447999999999999999999999999999999999999999999998876
Q ss_pred CCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCC
Q 003450 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (819)
Q Consensus 675 ~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~ 736 (819)
+. +|++|...++|||++.++.||+||.|-|..+|++|+||++|.|-+. ....++++.
T Consensus 314 sr---vlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg--~~in~v~~~ 370 (397)
T KOG0327|consen 314 SR---VLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKG--VAINFVTEE 370 (397)
T ss_pred ce---EEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCc--eeeeeehHh
Confidence 54 8999999999999999999999999999999999999999999654 234455554
No 110
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.68 E-value=2e-16 Score=146.81 Aligned_cols=120 Identities=28% Similarity=0.457 Sum_probs=110.4
Q ss_pred chHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccc
Q 003450 608 GKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (819)
Q Consensus 608 ~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~ 687 (819)
.|+..+.+++......+.++|||++....++.+.++|...+.++..++|+++..+|..+++.|+++. ..+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE---IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC---CcEEEEcChh
Confidence 6888889998887667889999999999999999999988999999999999999999999998765 3478899999
Q ss_pred cccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEE
Q 003450 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (819)
Q Consensus 688 ~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~ 730 (819)
++|+|++.+++||+++++|++..+.|++||++|.||...|.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998777654
No 111
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.62 E-value=6.1e-15 Score=172.87 Aligned_cols=312 Identities=15% Similarity=0.158 Sum_probs=214.6
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEE
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~ 362 (819)
...||-|.++|+.+ ..|+.+++-++||.||++..-. =+++ ..+-+|||.|+ +|+......+.. .++...
T Consensus 263 ~~FR~~Q~eaI~~~----l~Gkd~fvlmpTG~GKSLCYQl--PA~l--~~gitvVISPL~SLm~DQv~~L~~--~~I~a~ 332 (941)
T KOG0351|consen 263 KGFRPNQLEAINAT----LSGKDCFVLMPTGGGKSLCYQL--PALL--LGGVTVVISPLISLMQDQVTHLSK--KGIPAC 332 (941)
T ss_pred ccCChhHHHHHHHH----HcCCceEEEeecCCceeeEeec--cccc--cCCceEEeccHHHHHHHHHHhhhh--cCccee
Confidence 46899999999854 7899999999999999965411 1111 12378999996 777666666633 266777
Q ss_pred EEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhccccc---CC-c---cceEEEec
Q 003450 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASL---KP-I---KWQCMIVD 435 (819)
Q Consensus 363 ~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l---~~-~---~~~~lIvD 435 (819)
.+.+..........+... ..+....+++-.|++.+....... .. . ...++|||
T Consensus 333 ~L~s~q~~~~~~~i~q~l--------------------~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vID 392 (941)
T KOG0351|consen 333 FLSSIQTAAERLAILQKL--------------------ANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVID 392 (941)
T ss_pred eccccccHHHHHHHHHHH--------------------hCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEec
Confidence 777766665433332211 112246789999999986542221 11 1 25789999
Q ss_pred ccccccC-------cccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHH
Q 003450 436 EGHRLKN-------KDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (819)
Q Consensus 436 EaH~~kn-------~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l 508 (819)
|||-... ...++......+...-.|.||||--..--.|+...|++-+|..+.+.
T Consensus 393 EAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s------------------- 453 (941)
T KOG0351|consen 393 EAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS------------------- 453 (941)
T ss_pred HHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc-------------------
Confidence 9998743 22233333333344567999999766666666666666666533211
Q ss_pred HHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCC
Q 003450 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (819)
Q Consensus 509 ~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~ 588 (819)
..++...+-|....+ ...+..++.
T Consensus 454 ------------------fnR~NL~yeV~~k~~------------------------~~~~~~~~~-------------- 477 (941)
T KOG0351|consen 454 ------------------FNRPNLKYEVSPKTD------------------------KDALLDILE-------------- 477 (941)
T ss_pred ------------------CCCCCceEEEEeccC------------------------ccchHHHHH--------------
Confidence 122222332222221 000011111
Q ss_pred CCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHH
Q 003450 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (819)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~ 668 (819)
.+ +....+...||||..+...+.+...|...|++.+.+|++++..+|+.+..
T Consensus 478 ---------------------------~~-~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~ 529 (941)
T KOG0351|consen 478 ---------------------------ES-KLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQK 529 (941)
T ss_pred ---------------------------Hh-hhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHH
Confidence 11 11234678999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEE
Q 003450 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 731 (819)
Q Consensus 669 ~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~ 731 (819)
.|..+. +.++++|=|.|.|||-+++..||+|..|-+-.-|.|..|||+|-|+...+..|+
T Consensus 530 ~w~~~~---~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y 589 (941)
T KOG0351|consen 530 AWMSDK---IRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLY 589 (941)
T ss_pred HHhcCC---CeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEec
Confidence 998755 458999999999999999999999999999999999999999999988765553
No 112
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=5.5e-14 Score=161.92 Aligned_cols=117 Identities=16% Similarity=0.211 Sum_probs=103.4
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
...|...|.+.+..+...|.+|||||++....+.|..+|...|+++..+++ .+.+|+..|..|....+ .++|+|+
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g---~VtIATN 654 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKG---AVTIATN 654 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCC---eEEEecc
Confidence 346899999999988889999999999999999999999999999999997 57899999999965443 4899999
Q ss_pred cccccCCcccCC--------EEEEeCCCCCcchHHHHhHhhhhcCCCCcE
Q 003450 686 AGGLGINLATAD--------TVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (819)
Q Consensus 686 a~~~GinL~~a~--------~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V 727 (819)
.+|+|+|+.-.. +||.++.+-+...+.|++||++|.|.....
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS 704 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGES 704 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcce
Confidence 999999998333 458889999999999999999999998765
No 113
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.62 E-value=2e-15 Score=154.85 Aligned_cols=304 Identities=17% Similarity=0.221 Sum_probs=207.5
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHH-HHHHHhcCC-C-CceEEEecC-cchHHH---HHHHHHHcC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGER-I-SPHLVVAPL-STLRNW---EREFATWAP 357 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~-~l~~l~~~~-~-~~~LIv~P~-~ll~qW---~~e~~~~~p 357 (819)
+..|.|...++-+ ..++..+-..-||+|||...+. ++..+.... . -+.||+.|+ .|..|- ..++.+++
T Consensus 43 ~ptpiqRKTipli----Le~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt- 117 (529)
T KOG0337|consen 43 TPTPIQRKTIPLI----LEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGT- 117 (529)
T ss_pred CCCchhcccccce----eeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcccc-
Confidence 5778888887755 5677777788899999977544 444444322 2 289999996 555554 44555544
Q ss_pred CCeEEEEe-cChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhccc--ccCCccceEEEe
Q 003450 358 QMNVVMYV-GTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIV 434 (819)
Q Consensus 358 ~~~v~~~~-g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~lIv 434 (819)
++.....+ |+.-+.+.+.- ..++|+|++|+..+..-.. .+......+||+
T Consensus 118 ~lr~s~~~ggD~~eeqf~~l---------------------------~~npDii~ATpgr~~h~~vem~l~l~sveyVVf 170 (529)
T KOG0337|consen 118 KLRQSLLVGGDSIEEQFILL---------------------------NENPDIIIATPGRLLHLGVEMTLTLSSVEYVVF 170 (529)
T ss_pred chhhhhhcccchHHHHHHHh---------------------------ccCCCEEEecCceeeeeehheeccccceeeeee
Confidence 56666444 44444432221 1368999999998764321 133445679999
Q ss_pred ccccccc--CcccHHHHHHHhccc-CcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHH
Q 003450 435 DEGHRLK--NKDSKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (819)
Q Consensus 435 DEaH~~k--n~~s~~~~~l~~l~~-~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~ 511 (819)
|||.++- +..-++.+.+..++. ...+++|||-- +. .-+|.. .-
T Consensus 171 dEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp-~~------------------lv~fak---------------aG 216 (529)
T KOG0337|consen 171 DEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLP-RD------------------LVDFAK---------------AG 216 (529)
T ss_pred hhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCc-hh------------------hHHHHH---------------cc
Confidence 9999984 355678888888864 46799999941 00 001100 00
Q ss_pred HhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCC
Q 003450 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (819)
Q Consensus 512 l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~ 591 (819)
-.||.... ++...
T Consensus 217 ---------------l~~p~lVR---ldvet------------------------------------------------- 229 (529)
T KOG0337|consen 217 ---------------LVPPVLVR---LDVET------------------------------------------------- 229 (529)
T ss_pred ---------------CCCCceEE---eehhh-------------------------------------------------
Confidence 01121111 11000
Q ss_pred CccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhc
Q 003450 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (819)
Q Consensus 592 ~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~ 671 (819)
.+.+........+....|...|..++..... .++.+||+.....++.+...|...|+....+.|++.+..|..-+.+|+
T Consensus 230 kise~lk~~f~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~ 308 (529)
T KOG0337|consen 230 KISELLKVRFFRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFR 308 (529)
T ss_pred hcchhhhhheeeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhcccccc
Confidence 0000000011112345677777777776554 458999999999999999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCC
Q 003450 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (819)
Q Consensus 672 ~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~ 725 (819)
..... +|++|+.+++|+|++-.++||.||.|-.+..+.+|.||+.|.|.+.
T Consensus 309 ~~k~~---~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg 359 (529)
T KOG0337|consen 309 GRKTS---ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTG 359 (529)
T ss_pred CCccc---eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccc
Confidence 76554 8999999999999999999999999999999999999999998654
No 114
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.62 E-value=2e-13 Score=157.74 Aligned_cols=126 Identities=19% Similarity=0.201 Sum_probs=107.8
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
..+++..|.+-+....++|.++|||+.....++.|.++|...|+++..++|.++..+|.+++..|..+ .+.+||+|.
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G---~i~VLV~t~ 500 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLG---EFDVLVGIN 500 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcC---CceEEEEcC
Confidence 35677777888877778899999999999999999999999999999999999999999999999654 355899999
Q ss_pred cccccCCcccCCEEEEeC-----CCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCC
Q 003450 686 AGGLGINLATADTVIIYD-----SDWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (819)
Q Consensus 686 a~~~GinL~~a~~VI~~d-----~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~T 737 (819)
.+++|++++.++.||++| .+-+...++|++||++|.. .. .++.|+...|
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~G--~vi~~~~~~~ 554 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NG--KVIMYADKIT 554 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-CC--EEEEEEcCCC
Confidence 999999999999999999 4567889999999999974 22 3455555443
No 115
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.62 E-value=3.6e-14 Score=170.41 Aligned_cols=109 Identities=15% Similarity=0.129 Sum_probs=88.0
Q ss_pred cCceEEEEecchhHHHHHHHHHhhCCCe---EEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEE
Q 003450 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQ---YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (819)
Q Consensus 623 ~g~kvlIFs~~~~~ld~L~~~L~~~g~~---~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~V 699 (819)
....+|||++....++.+.+.|...+++ +.-++|+++.++|.++++.+ +...+|++|+.+++||+++++++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~-----g~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH-----SGRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc-----CCeeEEEeccHHhhccccCcceEE
Confidence 3568999999999999999999887765 66789999999999887642 234589999999999999999999
Q ss_pred EEeC---------------CCCCc---chHHHHhHhhhhcCCCCcEEEEEEEeCCCHH
Q 003450 700 IIYD---------------SDWNP---HADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (819)
Q Consensus 700 I~~d---------------~~wnp---~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvE 739 (819)
|.++ .+-.| ..+.||.||++|.+ +-.+|+|+++..++
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~d~~ 414 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSEDDFL 414 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHHHHH
Confidence 9974 22223 57899999999983 55678898876543
No 116
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.60 E-value=5e-14 Score=159.50 Aligned_cols=322 Identities=18% Similarity=0.231 Sum_probs=189.8
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC---------CCCceEEEecC-cchHH----HHH
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE---------RISPHLVVAPL-STLRN----WER 350 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~---------~~~~~LIv~P~-~ll~q----W~~ 350 (819)
.|.-.|-++.. ..|+.+.|.|++++||+|||..|...+..+..+ +.-+++.|+|. +|... |..
T Consensus 110 ~fN~iQS~vFp---~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~k 186 (1230)
T KOG0952|consen 110 EFNRIQSEVFP---VAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSK 186 (1230)
T ss_pred HHHHHHHHhhh---hhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhh
Confidence 44455655544 346889999999999999999987776666543 12289999994 55543 444
Q ss_pred HHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhh-------cccc
Q 003450 351 EFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL-------DSAS 423 (819)
Q Consensus 351 e~~~~~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~-------~~~~ 423 (819)
.|..| ++.|..++|+...-+. ...+.+|+|||++..-- +...
T Consensus 187 kl~~~--gi~v~ELTGD~ql~~t-----------------------------ei~~tqiiVTTPEKwDvvTRk~~~d~~l 235 (1230)
T KOG0952|consen 187 KLAPL--GISVRELTGDTQLTKT-----------------------------EIADTQIIVTTPEKWDVVTRKSVGDSAL 235 (1230)
T ss_pred hcccc--cceEEEecCcchhhHH-----------------------------HHHhcCEEEecccceeeeeeeeccchhh
Confidence 44333 7899999998765321 13467899999997631 1111
Q ss_pred cCCccceEEEecccccccCcccHHH-----HHHHhc----ccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHH
Q 003450 424 LKPIKWQCMIVDEGHRLKNKDSKLF-----SSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQE 494 (819)
Q Consensus 424 l~~~~~~~lIvDEaH~~kn~~s~~~-----~~l~~l----~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~ 494 (819)
+. ...+|||||.|-+...-+... +.+... +.-+.++||||- -|+.|+-. ||..+++...-.|..
T Consensus 236 ~~--~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATl--PN~eDvA~---fL~vn~~~glfsFd~ 308 (1230)
T KOG0952|consen 236 FS--LVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATL--PNYEDVAR---FLRVNPYAGLFSFDQ 308 (1230)
T ss_pred hh--heeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccC--CCHHHHHH---HhcCCCccceeeecc
Confidence 22 456999999999976543322 222221 234678999994 23444433 333333333333333
Q ss_pred HHhccchHHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCC--HHHHHHHHHHHHHHHHHHHhcCCCcchHHHH
Q 003450 495 EFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELS--SKQKEYYKAILTRNYQILTRRGGAQISLINV 572 (819)
Q Consensus 495 ~~~~~~~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls--~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~ 572 (819)
.|.- +| .....+-+.-. ..|.+..
T Consensus 309 ~yRP-----------------------------vp-L~~~~iG~k~~~~~~~~~~~------------------------ 334 (1230)
T KOG0952|consen 309 RYRP-----------------------------VP-LTQGFIGIKGKKNRQQKKNI------------------------ 334 (1230)
T ss_pred cccc-----------------------------cc-eeeeEEeeecccchhhhhhH------------------------
Confidence 3321 00 00111111100 0111100
Q ss_pred HHHHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHH----hhCC
Q 003450 573 VMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL----TFKK 648 (819)
Q Consensus 573 ~~~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L----~~~g 648 (819)
...+...+.++ ..+|+.|+||++.+...-...+.| ...|
T Consensus 335 ---------------------------------d~~~~~kv~e~----~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g 377 (1230)
T KOG0952|consen 335 ---------------------------------DEVCYDKVVEF----LQEGHQVLVFVHSRNETIRTAKKLRERAETNG 377 (1230)
T ss_pred ---------------------------------HHHHHHHHHHH----HHcCCeEEEEEecChHHHHHHHHHHHHHHhcC
Confidence 11122222232 345999999998754333333333 2222
Q ss_pred C-------------------eEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcc
Q 003450 649 W-------------------QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPH 709 (819)
Q Consensus 649 ~-------------------~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~ 709 (819)
. ....-+.++.-.+|+..-+.|..+. +-+|++|...+.|+||++--.+|-=..-|++.
T Consensus 378 ~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~---i~vL~cTaTLAwGVNLPA~aViIKGT~~ydss 454 (1230)
T KOG0952|consen 378 EKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGH---IKVLCCTATLAWGVNLPAYAVIIKGTQVYDSS 454 (1230)
T ss_pred cccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCC---ceEEEecceeeeccCCcceEEEecCCcccccc
Confidence 2 2334556677788988889997654 34899999999999999766666555556665
Q ss_pred h----------HHHHhHhhhhcCCCCcEEEEEEEeCCCHHHH
Q 003450 710 A----------DLQAMARAHRLGQTNKVMIFRLITRGSIEER 741 (819)
Q Consensus 710 ~----------~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~ 741 (819)
. .+|..|||+|..=.+.-..+.+.+.++++-+
T Consensus 455 kg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y 496 (1230)
T KOG0952|consen 455 KGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHY 496 (1230)
T ss_pred cCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHH
Confidence 4 6799999999876666555555565655544
No 117
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=4.5e-13 Score=154.18 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=97.3
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
...|..++.+-+..+.+.|..|||-+.++..-+.|...|...|+++..++.... +.-.++|.. ++..+ .+.|+|+
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~--AG~~g--~VTIATN 624 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAG--AGKLG--AVTVATN 624 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHh--cCCCC--cEEEeec
Confidence 457888888888888899999999999999999999999999999999988633 222344433 23333 3699999
Q ss_pred cccccCCccc--------CCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEE
Q 003450 686 AGGLGINLAT--------ADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (819)
Q Consensus 686 a~~~GinL~~--------a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~ 730 (819)
.+|+|.|+.- .=+||....+-|...+.|..||++|.|.......|
T Consensus 625 mAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~ 677 (970)
T PRK12899 625 MAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF 677 (970)
T ss_pred cccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE
Confidence 9999998753 23899999999999999999999999998765443
No 118
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.58 E-value=2.5e-15 Score=125.44 Aligned_cols=78 Identities=35% Similarity=0.570 Sum_probs=73.7
Q ss_pred HHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhc
Q 003450 642 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (819)
Q Consensus 642 ~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~ 721 (819)
++|+..|+++..++|+++..+|+.+++.|+.+.. .+|++|.++++|||++.+++||+++++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI---RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS---SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc---eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 4688899999999999999999999999998765 3799999999999999999999999999999999999999998
Q ss_pred C
Q 003450 722 G 722 (819)
Q Consensus 722 G 722 (819)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
No 119
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.56 E-value=1.2e-13 Score=166.48 Aligned_cols=110 Identities=13% Similarity=0.124 Sum_probs=88.5
Q ss_pred cCceEEEEecchhHHHHHHHHHhhCC---CeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEE
Q 003450 623 QGHRVLIYSQFQHMLDLLEDYLTFKK---WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (819)
Q Consensus 623 ~g~kvlIFs~~~~~ld~L~~~L~~~g---~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~V 699 (819)
....+|||......++.+.+.|...+ +.+.-++|+++.++|+++++.+ . . ..++++|+.++.||+++++.+|
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~-~-rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---S-G-RRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---C-C-ceEEEeccHHHhccccCCeeEE
Confidence 34689999999999999999998764 4588899999999999885543 2 2 2479999999999999999999
Q ss_pred EEeCCC------------------CCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHH
Q 003450 700 IIYDSD------------------WNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (819)
Q Consensus 700 I~~d~~------------------wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe 740 (819)
|.++.. -+...+.||.||++|.| +-.+|+|+++...+.
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFNS 408 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHHh
Confidence 987732 13458899999999997 556789998765443
No 120
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.55 E-value=2.5e-12 Score=149.90 Aligned_cols=124 Identities=20% Similarity=0.216 Sum_probs=106.8
Q ss_pred CchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEecccc
Q 003450 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (819)
Q Consensus 607 s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a 686 (819)
.+++..|.+.|....++|.++||||.....++.|.+.|...|+++..++|.++..+|..++..|..+ .+.+||+|..
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g---~i~vlV~t~~ 505 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLG---EFDVLVGINL 505 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcC---CceEEEEeCH
Confidence 4567778888888788899999999999999999999999999999999999999999999999654 3458999999
Q ss_pred ccccCCcccCCEEEEeCC-----CCCcchHHHHhHhhhhcCCCCcEEEEEEEeCC
Q 003450 687 GGLGINLATADTVIIYDS-----DWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (819)
Q Consensus 687 ~~~GinL~~a~~VI~~d~-----~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~ 736 (819)
+++|++++.+++||++|. +-++..++|++||++|. . .-.++.|++..
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~~ 557 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADKI 557 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecCC
Confidence 999999999999999997 45888999999999994 3 23355566543
No 121
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=1.7e-12 Score=145.75 Aligned_cols=389 Identities=18% Similarity=0.158 Sum_probs=214.3
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchH----HHHHHHHHHcCC
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR----NWEREFATWAPQ 358 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~----qW~~e~~~~~p~ 358 (819)
|...++-|+-|...| ..|-|.-+.||.|||++|...+.... ...+.+-||+|+..+. +|...+-.++ +
T Consensus 76 g~r~ydvQlig~l~L------l~G~VaEM~TGEGKTLvA~l~a~l~A-L~G~~VhvvT~NdyLA~RDae~m~~ly~~L-G 147 (764)
T PRK12326 76 GLRPFDVQLLGALRL------LAGDVIEMATGEGKTLAGAIAAAGYA-LQGRRVHVITVNDYLARRDAEWMGPLYEAL-G 147 (764)
T ss_pred CCCcchHHHHHHHHH------hCCCcccccCCCCHHHHHHHHHHHHH-HcCCCeEEEcCCHHHHHHHHHHHHHHHHhc-C
Confidence 455677899888755 24678899999999998765544332 2345889999987663 4777777777 8
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc---------ccccCCccc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---------SASLKPIKW 429 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~---------~~~l~~~~~ 429 (819)
+.+....+.........- ..+||+-+|...+.-| ....-..++
T Consensus 148 Lsvg~i~~~~~~~err~a----------------------------Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~ 199 (764)
T PRK12326 148 LTVGWITEESTPEERRAA----------------------------YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNP 199 (764)
T ss_pred CEEEEECCCCCHHHHHHH----------------------------HcCCCEEcCCcccccccchhhhccChHhhcCCcc
Confidence 899888776554332222 2344444444333211 122223467
Q ss_pred eEEEecccccccCcccHHHHHHHhcccCcEEEEeCCCCC-CChhHHHhhhcccCCCC-CC------------ChHHHHHH
Q 003450 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQ-NNLDELFMLMHFLDAGK-FG------------SLEEFQEE 495 (819)
Q Consensus 430 ~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~-n~~~el~~ll~~l~~~~-~~------------~~~~f~~~ 495 (819)
.++||||++.+.=+ .++.-+.+||.+-. +.+..+..+..-|.++. |. ......+.
T Consensus 200 ~faIVDEvDSiLID-----------eArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~ 268 (764)
T PRK12326 200 DVAIIDEADSVLVD-----------EALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEK 268 (764)
T ss_pred ceeeecchhhheec-----------cccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHH
Confidence 89999999876211 24455777775422 22233333333343321 10 00111112
Q ss_pred Hhc---cchHH----HHHHHHHHHhhHH-HHHhhhhhhhcCCCceEEEEE-------------------------ecCCH
Q 003450 496 FKD---INQEE----QISRLHRMLAPHL-LRRVKKDVMKELPPKKELILR-------------------------VELSS 542 (819)
Q Consensus 496 ~~~---~~~~~----~~~~l~~~l~~~~-lrr~k~dv~~~lp~~~~~~v~-------------------------~~ls~ 542 (819)
+.. .-... .+..+...|..+. +.+-+.-+.. .....+|- |++++
T Consensus 269 ~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~---dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~ 345 (764)
T PRK12326 269 ALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIVR---DGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTE 345 (764)
T ss_pred HcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEEE---CCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCC
Confidence 111 00011 1222222222222 2221111111 01111110 11111
Q ss_pred HHHHH----HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHH
Q 003450 543 KQKEY----YKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMV 618 (819)
Q Consensus 543 ~q~~~----y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~ 618 (819)
+-.-+ |..++. .+..+...+|+. .....+++++.+-+...-+........+....-......|..++.+-+.
T Consensus 346 e~~t~AsIT~QnfFr-~Y~kLsGMTGTa---~t~~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~ 421 (764)
T PRK12326 346 TGEVLDTITVQALIG-RYPTVCGMTGTA---VAAGEQLRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIA 421 (764)
T ss_pred CceeeehhhHHHHHH-hcchheeecCCC---hhHHHHHHHHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHH
Confidence 11000 111110 111222222222 2233456666655443222111100000001111224568888888888
Q ss_pred HHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCccc---
Q 003450 619 KLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLAT--- 695 (819)
Q Consensus 619 ~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~--- 695 (819)
.+.+.|..|||.+.++...+.|...|...|++...++.... ++-.++|.+= +..+ .+.|+|..+|+|.|+.-
T Consensus 422 ~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~A--G~~g--aVTIATNMAGRGTDIkLg~~ 496 (764)
T PRK12326 422 EVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEA--GKYG--AVTVSTQMAGRGTDIRLGGS 496 (764)
T ss_pred HHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhc--CCCC--cEEEEecCCCCccCeecCCC
Confidence 88899999999999999999999999999999999998643 3334444442 3333 37999999999999762
Q ss_pred ------------CCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEE
Q 003450 696 ------------ADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (819)
Q Consensus 696 ------------a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~ 730 (819)
.=+||....+-|...+.|..||++|.|.......|
T Consensus 497 ~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 497 DEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred cccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 23899999999999999999999999998765544
No 122
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.54 E-value=5.3e-14 Score=140.51 Aligned_cols=154 Identities=29% Similarity=0.352 Sum_probs=109.7
Q ss_pred CCCchhHHHHHHHHHHhhcCC-CceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEec-CcchHHHHHHHHHHcCC--
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQ-THVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWEREFATWAPQ-- 358 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~-~~~iLade~GlGKT~~~i~~l~~l~~~~-~~~~LIv~P-~~ll~qW~~e~~~~~p~-- 358 (819)
.+++++|.+++..+ ... +++++.+++|+|||.+++.++....... ..++||++| ..+..||..++..+.+.
T Consensus 7 ~~~~~~Q~~~~~~~----~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 82 (201)
T smart00487 7 EPLRPYQKEAIEAL----LSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLG 82 (201)
T ss_pred CCCCHHHHHHHHHH----HcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 57999999999877 344 8999999999999998777776665543 458999999 57779999999998865
Q ss_pred -CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccc--cCCccceEEEec
Q 003450 359 -MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVD 435 (819)
Q Consensus 359 -~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~--l~~~~~~~lIvD 435 (819)
.....+.+... ...+... .....+++++|++.+...... ....+++++|+|
T Consensus 83 ~~~~~~~~~~~~-~~~~~~~-------------------------~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiD 136 (201)
T smart00487 83 LKVVGLYGGDSK-REQLRKL-------------------------ESGKTDILVTTPGRLLDLLENDLLELSNVDLVILD 136 (201)
T ss_pred eEEEEEeCCcch-HHHHHHH-------------------------hcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEE
Confidence 33334444332 2222221 012238999999988765444 445578899999
Q ss_pred ccccccC-cccH-HHHHHHhc-ccCcEEEEeCCCC
Q 003450 436 EGHRLKN-KDSK-LFSSLKQY-STRHRVLLTGTPL 467 (819)
Q Consensus 436 EaH~~kn-~~s~-~~~~l~~l-~~~~~llLTgTP~ 467 (819)
|+|.+.+ .... ....+..+ ...+++++||||.
T Consensus 137 E~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~ 171 (201)
T smart00487 137 EAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPP 171 (201)
T ss_pred CHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCc
Confidence 9999985 3333 33344444 4778899999995
No 123
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.53 E-value=3.9e-13 Score=135.80 Aligned_cols=315 Identities=16% Similarity=0.137 Sum_probs=207.3
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEE
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~ 362 (819)
.+.||.|++++|.. ..+..++|..++|-||++..-. -+|.. .+-.|||||. +++....-.++....+...+
T Consensus 93 ekfrplq~~ain~~----ma~ed~~lil~tgggkslcyql--pal~a--dg~alvi~plislmedqil~lkqlgi~as~l 164 (695)
T KOG0353|consen 93 EKFRPLQLAAINAT----MAGEDAFLILPTGGGKSLCYQL--PALCA--DGFALVICPLISLMEDQILQLKQLGIDASML 164 (695)
T ss_pred HhcChhHHHHhhhh----hccCceEEEEeCCCccchhhhh--hHHhc--CCceEeechhHHHHHHHHHHHHHhCcchhhc
Confidence 35899999999976 6788999999999999975321 12222 2478999996 88888888888876544443
Q ss_pred EEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc-------cccCCccceEEEec
Q 003450 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS-------ASLKPIKWQCMIVD 435 (819)
Q Consensus 363 ~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~-------~~l~~~~~~~lIvD 435 (819)
-...++..-..... + -..+...|.++..|++.+.+.. ..+..-.|.+|-+|
T Consensus 165 nansske~~k~v~~-~---------------------i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaid 222 (695)
T KOG0353|consen 165 NANSSKEEAKRVEA-A---------------------ITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAID 222 (695)
T ss_pred cCcccHHHHHHHHH-H---------------------HcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeec
Confidence 33333333222211 1 1123457889999999876532 22344467899999
Q ss_pred ccccccC-------cccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHH
Q 003450 436 EGHRLKN-------KDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (819)
Q Consensus 436 EaH~~kn-------~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l 508 (819)
|.|-+.. ..+.+...-..++....++||||...+-+.|...+|..-.
T Consensus 223 evhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~-------------------------- 276 (695)
T KOG0353|consen 223 EVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEA-------------------------- 276 (695)
T ss_pred ceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHh--------------------------
Confidence 9998732 2233333334556778899999976554443333222100
Q ss_pred HHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCC
Q 003450 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (819)
Q Consensus 509 ~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~ 588 (819)
.+ .+|--.|.|-|.-.
T Consensus 277 -----~~-----------------------------------------------------------tf~a~fnr~nl~ye 292 (695)
T KOG0353|consen 277 -----AF-----------------------------------------------------------TFRAGFNRPNLKYE 292 (695)
T ss_pred -----hh-----------------------------------------------------------eeecccCCCCceeE
Confidence 00 00001111111111
Q ss_pred CCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHH
Q 003450 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (819)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~ 668 (819)
+...+...+ .-++-+.+++..-. .|..-||||-...-.+.+...|...|+....++..+.+++|..+-.
T Consensus 293 v~qkp~n~d----------d~~edi~k~i~~~f-~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq 361 (695)
T KOG0353|consen 293 VRQKPGNED----------DCIEDIAKLIKGDF-AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQ 361 (695)
T ss_pred eeeCCCChH----------HHHHHHHHHhcccc-CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccc
Confidence 111111111 01112222332211 3778899999999999999999999999999999999999988888
Q ss_pred HhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHH-----------------------------------
Q 003450 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQ----------------------------------- 713 (819)
Q Consensus 669 ~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Q----------------------------------- 713 (819)
.|-. +.+-++++|-+.|.|||-+.+..||+-..+-+..+|.|
T Consensus 362 ~w~a---~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfki 438 (695)
T KOG0353|consen 362 GWIA---GEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKI 438 (695)
T ss_pred cccc---cceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhcccee
Confidence 8854 45568999999999999999999999999999999999
Q ss_pred --------HhHhhhhcCCCCcEEEEEE
Q 003450 714 --------AMARAHRLGQTNKVMIFRL 732 (819)
Q Consensus 714 --------a~gR~~R~Gq~~~V~v~~l 732 (819)
--||++|-|++-.+..|+=
T Consensus 439 ffavfsekesgragrd~~~a~cilyy~ 465 (695)
T KOG0353|consen 439 FFAVFSEKESGRAGRDDMKADCILYYG 465 (695)
T ss_pred eeeeecchhccccccCCCcccEEEEec
Confidence 5688899999888776653
No 124
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.50 E-value=1.8e-13 Score=128.44 Aligned_cols=136 Identities=25% Similarity=0.297 Sum_probs=98.7
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcC-CCCceEEEecCcch-HHHHHHHHHHcC-CCeEEEEecChhHHHHHHHhhhcC
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTL-RNWEREFATWAP-QMNVVMYVGTSQARNIIREYEFYF 381 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~-~~~~~LIv~P~~ll-~qW~~e~~~~~p-~~~v~~~~g~~~~r~~~~~~e~~~ 381 (819)
+++++.+++|+|||.+++.++..+... ..++++|++|...+ .+|...+..+.. ...+..+.+..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKL----- 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHH-----
Confidence 468999999999999999999888765 44699999997555 556777777774 4677777766554432211
Q ss_pred CCCccccccccCCccccccccccccccEEEchhhHHhhcccc--cCCccceEEEecccccccCcccHHH---HHHHhccc
Q 003450 382 PKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHRLKNKDSKLF---SSLKQYST 456 (819)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~--l~~~~~~~lIvDEaH~~kn~~s~~~---~~l~~l~~ 456 (819)
.....+++++||+.+...... .....++++|+||+|.+.+...... ........
T Consensus 76 ---------------------~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~ 134 (144)
T cd00046 76 ---------------------LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKD 134 (144)
T ss_pred ---------------------hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCcc
Confidence 124678999999988754332 2344789999999999987654443 23334567
Q ss_pred CcEEEEeCCC
Q 003450 457 RHRVLLTGTP 466 (819)
Q Consensus 457 ~~~llLTgTP 466 (819)
..++++||||
T Consensus 135 ~~~i~~saTp 144 (144)
T cd00046 135 RQVLLLSATP 144 (144)
T ss_pred ceEEEEeccC
Confidence 7899999998
No 125
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.48 E-value=1.9e-12 Score=153.20 Aligned_cols=352 Identities=16% Similarity=0.147 Sum_probs=201.1
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC---CCceEEEecC-cchHHHHHHHHHHcCCC
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPL-STLRNWEREFATWAPQM 359 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~---~~~~LIv~P~-~ll~qW~~e~~~~~p~~ 359 (819)
...+++|..+++........+.-++|.++||.|||..+++.+.+..... ..+++.|.|. +++.+-.+.+..++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 3468899999998877665555889999999999999988888877663 4488888885 66677788888877544
Q ss_pred eEEEE--ecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEch-hhHHhhc-----ccccCCccceE
Q 003450 360 NVVMY--VGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTS-YEMINLD-----SASLKPIKWQC 431 (819)
Q Consensus 360 ~v~~~--~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~t-y~~l~~~-----~~~l~~~~~~~ 431 (819)
.+... +|....... ...+. ........... ....-+.+.+++ .+.+... ...+..+.-.+
T Consensus 274 ~~~~~~~h~~~~~~~~-~~~~~----------~~~~~~~~~ds-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~ 341 (733)
T COG1203 274 SVIGKSLHSSSKEPLL-LEPDQ----------DILLTLTTNDS-YKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSL 341 (733)
T ss_pred ccccccccccccchhh-hcccc----------ccceeEEeccc-ccceeccccccCHhHhhhhhccccchHHHHHHHhhc
Confidence 44443 444433221 11100 00000000000 011122333333 3333211 01122234568
Q ss_pred EEecccccccCc-ccHHHHH-HHhc--ccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHH
Q 003450 432 MIVDEGHRLKNK-DSKLFSS-LKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (819)
Q Consensus 432 lIvDEaH~~kn~-~s~~~~~-l~~l--~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~ 507 (819)
+|+||+|-+-.. .....-+ +..+ .....|++|||+- . .
T Consensus 342 vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP----------------~------~---------------- 383 (733)
T COG1203 342 VILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLP----------------P------F---------------- 383 (733)
T ss_pred hhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCC----------------H------H----------------
Confidence 999999998554 2222222 2222 2567899999971 0 0
Q ss_pred HHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccC
Q 003450 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (819)
Q Consensus 508 l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~ 587 (819)
+.+.+.......... . .+.. .+ ..++.|.+..
T Consensus 384 ~~~~l~~~~~~~~~~-~---~~~~-----~~---------------------------------------~~~~e~~~~~ 415 (733)
T COG1203 384 LKEKLKKALGKGREV-V---ENAK-----FC---------------------------------------PKEDEPGLKR 415 (733)
T ss_pred HHHHHHHHHhcccce-e---cccc-----cc---------------------------------------cccccccccc
Confidence 111111111000000 0 0000 00 0001111111
Q ss_pred CCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHH
Q 003450 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (819)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i 667 (819)
....+.. .... ..+......-.+.|.+++|-++.+..+..+.+.|+..+.++..+|+..+...|.+.+
T Consensus 416 ~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke 483 (733)
T COG1203 416 KERVDVE-----------DGPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKE 483 (733)
T ss_pred ccchhhh-----------hhhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHH
Confidence 0000000 0000 122233333445689999999999999999999998887899999999999999998
Q ss_pred HHhcCC--CCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcC--CCCcEEEEEEEeCCCHHHHHH
Q 003450 668 DRFNAK--NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG--QTNKVMIFRLITRGSIEERMM 743 (819)
Q Consensus 668 ~~F~~~--~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~G--q~~~V~v~~li~~~TvEe~i~ 743 (819)
+....- .... .++|+|.+...|+|+. .+.+|- |+. -....+||.||++|-| ....+.||...-......+.+
T Consensus 484 ~~l~~~~~~~~~-~IvVaTQVIEagvDid-fd~mIT-e~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~ 559 (733)
T COG1203 484 RELKKLFKQNEG-FIVVATQVIEAGVDID-FDVLIT-ELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSY 559 (733)
T ss_pred HHHHHHHhccCC-eEEEEeeEEEEEeccc-cCeeee-cCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhh
Confidence 865431 1122 3799999999999998 555543 332 2567899999999999 556777777666666555555
Q ss_pred HHHHHh
Q 003450 744 QMTKKK 749 (819)
Q Consensus 744 ~~~~~K 749 (819)
+....+
T Consensus 560 ~~~~~~ 565 (733)
T COG1203 560 EKLEKK 565 (733)
T ss_pred hcchhh
Confidence 544433
No 126
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=2.9e-12 Score=147.51 Aligned_cols=120 Identities=16% Similarity=0.166 Sum_probs=98.5
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
...|..++.+-+..+.+.|..|||-+.++...+.|..+|...|+++..++.... ++-.++|. +++..+ .+.|+|.
T Consensus 431 ~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa--~AG~~G--aVTIATN 505 (913)
T PRK13103 431 AEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIA--QAGRPG--ALTIATN 505 (913)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHH--cCCCCC--cEEEecc
Confidence 457899999999999999999999999999999999999999999988887633 33334444 334444 3699999
Q ss_pred cccccCCcc-------------------------------------cCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEE
Q 003450 686 AGGLGINLA-------------------------------------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (819)
Q Consensus 686 a~~~GinL~-------------------------------------~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 728 (819)
.+|+|.|+. +.=+||.-..+-|...+.|..||++|.|......
T Consensus 506 MAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~ 585 (913)
T PRK13103 506 MAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSR 585 (913)
T ss_pred CCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 999999984 2348999999999999999999999999987655
Q ss_pred EE
Q 003450 729 IF 730 (819)
Q Consensus 729 v~ 730 (819)
.|
T Consensus 586 f~ 587 (913)
T PRK13103 586 FY 587 (913)
T ss_pred EE
Confidence 44
No 127
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.47 E-value=2.5e-12 Score=132.23 Aligned_cols=318 Identities=16% Similarity=0.177 Sum_probs=200.0
Q ss_pred hhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHc-C--CCeEEE
Q 003450 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA-P--QMNVVM 363 (819)
Q Consensus 288 ~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~-p--~~~v~~ 363 (819)
+.|..+++-+ ...+..+.+.++||+||++..- +-.|...+ -++||.|. .|+....+-+.++- | .+|..
T Consensus 23 ~LQE~A~~c~---VK~k~DVyVsMPTGaGKSLCyQ--LPaL~~~g--ITIV~SPLiALIkDQiDHL~~LKVp~~SLNSK- 94 (641)
T KOG0352|consen 23 RLQEQAINCI---VKRKCDVYVSMPTGAGKSLCYQ--LPALVHGG--ITIVISPLIALIKDQIDHLKRLKVPCESLNSK- 94 (641)
T ss_pred hHHHHHHHHH---HhccCcEEEeccCCCchhhhhh--chHHHhCC--eEEEehHHHHHHHHHHHHHHhcCCchhHhcch-
Confidence 5788888755 3567799999999999997532 11222233 67888885 66666666666543 1 11111
Q ss_pred EecChhHH-HHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc-----cccc-CCccceEEEecc
Q 003450 364 YVGTSQAR-NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD-----SASL-KPIKWQCMIVDE 436 (819)
Q Consensus 364 ~~g~~~~r-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~-----~~~l-~~~~~~~lIvDE 436 (819)
-+..+| ..+-.+ ........++-+|++....+ ...| ......+++|||
T Consensus 95 --lSt~ER~ri~~DL-----------------------~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDE 149 (641)
T KOG0352|consen 95 --LSTVERSRIMGDL-----------------------AKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDE 149 (641)
T ss_pred --hhHHHHHHHHHHH-----------------------HhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEech
Confidence 111222 222222 11234456788888876543 1112 222457999999
Q ss_pred cccccCcc------cHHHHHHHh-cccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHH-hccchHHHHHHH
Q 003450 437 GHRLKNKD------SKLFSSLKQ-YSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEF-KDINQEEQISRL 508 (819)
Q Consensus 437 aH~~kn~~------s~~~~~l~~-l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~-~~~~~~~~~~~l 508 (819)
||-....+ -...-+|.. +..--.+.||||.-..--+|+|..|++-.|-..-....|.... -++
T Consensus 150 AHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~--------- 220 (641)
T KOG0352|consen 150 AHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDN--------- 220 (641)
T ss_pred hhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHH---------
Confidence 99873221 111122222 2233458899998777778899999887775432223332211 000
Q ss_pred HHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCC
Q 003450 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (819)
Q Consensus 509 ~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~ 588 (819)
.|+..+...+..|. .-.+++...|.-+..
T Consensus 221 --------------------------------------~~K~~I~D~~~~La-------------DF~~~~LG~~~~~~~ 249 (641)
T KOG0352|consen 221 --------------------------------------HMKSFITDCLTVLA-------------DFSSSNLGKHEKASQ 249 (641)
T ss_pred --------------------------------------HHHHHhhhHhHhHH-------------HHHHHhcCChhhhhc
Confidence 11111111111110 011122111110000
Q ss_pred CCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHH
Q 003450 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (819)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~ 668 (819)
.. +....--||||..+...+.+.-.|...|++...++.+....+|.++.+
T Consensus 250 ~~------------------------------K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe 299 (641)
T KOG0352|consen 250 NK------------------------------KTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQE 299 (641)
T ss_pred CC------------------------------CCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHH
Confidence 00 001236799999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEE
Q 003450 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 731 (819)
Q Consensus 669 ~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~ 731 (819)
.|-+++-+ ++++|.+.|.|+|=+++..||+++++-|..-|.|--||++|-|-..-+..|+
T Consensus 300 ~WM~~~~P---vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 300 KWMNNEIP---VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred HHhcCCCC---EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeee
Confidence 99876655 7899999999999999999999999999999999999999999887777664
No 128
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.44 E-value=2.7e-12 Score=147.53 Aligned_cols=73 Identities=27% Similarity=0.404 Sum_probs=60.1
Q ss_pred CCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEE-----eCCC------CCcchHHHHhH
Q 003450 648 KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-----YDSD------WNPHADLQAMA 716 (819)
Q Consensus 648 g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~-----~d~~------wnp~~~~Qa~g 716 (819)
.+.++.-+.+++..+|+..-+.|.++ .+-+|+||...+.|+||++ ++||+ |||. -+|...+|+.|
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~g---~iqvlvstatlawgvnlpa-htViikgtqvy~pekg~w~elsp~dv~qmlg 682 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFADG---HIQVLVSTATLAWGVNLPA-HTVIIKGTQVYDPEKGRWTELSPLDVMQMLG 682 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhcC---ceeEEEeehhhhhhcCCCc-ceEEecCccccCcccCccccCCHHHHHHHHh
Confidence 35688899999999999999999664 4458999999999999994 66666 6664 36788999999
Q ss_pred hhhhcCCC
Q 003450 717 RAHRLGQT 724 (819)
Q Consensus 717 R~~R~Gq~ 724 (819)
|++|.+-.
T Consensus 683 ragrp~~D 690 (1674)
T KOG0951|consen 683 RAGRPQYD 690 (1674)
T ss_pred hcCCCccC
Confidence 99998643
No 129
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.43 E-value=2.3e-11 Score=138.70 Aligned_cols=120 Identities=18% Similarity=0.222 Sum_probs=98.6
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
...|...+.+-+....+.|..|||.|.++...+.|..+|...|++...++.... +++..|-. +++..+ .+.|+|.
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa-~AG~~G--aVTIATN 482 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA-KAGQKG--AITIATN 482 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH-hCCCCC--eEEEecc
Confidence 456888888888888889999999999999999999999999999999998633 34433333 344434 4799999
Q ss_pred cccccCCcccCC--------EEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEE
Q 003450 686 AGGLGINLATAD--------TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (819)
Q Consensus 686 a~~~GinL~~a~--------~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~ 730 (819)
.+|+|.|+.-.. +||....+-|...+.|..||++|.|.......|
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 999999987433 899999999999999999999999998765544
No 130
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.43 E-value=3.4e-13 Score=113.65 Aligned_cols=81 Identities=31% Similarity=0.507 Sum_probs=75.2
Q ss_pred HHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhh
Q 003450 639 LLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARA 718 (819)
Q Consensus 639 ~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~ 718 (819)
.|.++|...++++..++|+++..+|.++++.|+.+.. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4677888889999999999999999999999987654 5899999999999999999999999999999999999999
Q ss_pred hhcC
Q 003450 719 HRLG 722 (819)
Q Consensus 719 ~R~G 722 (819)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 131
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.42 E-value=1.3e-10 Score=123.71 Aligned_cols=131 Identities=20% Similarity=0.276 Sum_probs=107.2
Q ss_pred HHHHHHH---HHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccc
Q 003450 613 LDKMMVK---LKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGL 689 (819)
Q Consensus 613 l~~ll~~---l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~ 689 (819)
+++++.+ ..+.|+|+||-+-...|.+-|.+||...|+++..+|..+..-+|.++|...+.+. +-+|+..+.+-+
T Consensus 432 vdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~---~DvLVGINLLRE 508 (663)
T COG0556 432 VDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE---FDVLVGINLLRE 508 (663)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCC---ccEEEeehhhhc
Confidence 4444444 4457899999999999999999999999999999999999999999999997654 448999999999
Q ss_pred cCCcccCCEEEEeCCC-----CCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 003450 690 GINLATADTVIIYDSD-----WNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 747 (819)
Q Consensus 690 GinL~~a~~VI~~d~~-----wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~ 747 (819)
|||+|.++.|-++|.+ -+-...+|-+|||.|--.. .|..|-=...++.++.|-+...
T Consensus 509 GLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~G-kvIlYAD~iT~sM~~Ai~ET~R 570 (663)
T COG0556 509 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG-KVILYADKITDSMQKAIDETER 570 (663)
T ss_pred cCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCC-eEEEEchhhhHHHHHHHHHHHH
Confidence 9999999999999988 4778899999999995443 3444433344566666665544
No 132
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.41 E-value=1.7e-12 Score=126.20 Aligned_cols=151 Identities=20% Similarity=0.244 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHh-cCCCCceEEEecC-cchHHHHHHHHHHcC--CCeEEE
Q 003450 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GERISPHLVVAPL-STLRNWEREFATWAP--QMNVVM 363 (819)
Q Consensus 288 ~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~-~~~~~~~LIv~P~-~ll~qW~~e~~~~~p--~~~v~~ 363 (819)
|+|.+++..+ ..+++.++.+++|+|||..++..+.... +.....++|++|. .++.|-.+++..++. +.++..
T Consensus 2 ~~Q~~~~~~i----~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 2 PLQQEAIEAI----ISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp HHHHHHHHHH----HTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred HHHHHHHHHH----HcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccc
Confidence 7999999877 3678899999999999999876665544 4433499999996 788888899998885 478888
Q ss_pred EecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccc--cCCccceEEEeccccccc
Q 003450 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHRLK 441 (819)
Q Consensus 364 ~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~--l~~~~~~~lIvDEaH~~k 441 (819)
++|........... -...++|+|+|++.+...... ......++||+||+|.+-
T Consensus 78 ~~~~~~~~~~~~~~-------------------------~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~ 132 (169)
T PF00270_consen 78 LHGGQSISEDQREV-------------------------LSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLS 132 (169)
T ss_dssp ESTTSCHHHHHHHH-------------------------HHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHH
T ss_pred cccccccccccccc-------------------------ccccccccccCcchhhccccccccccccceeeccCcccccc
Confidence 88765532111111 013588999999998754332 122347899999999996
Q ss_pred Cc-cc-HHHHHHHhc---ccCcEEEEeCCCC
Q 003450 442 NK-DS-KLFSSLKQY---STRHRVLLTGTPL 467 (819)
Q Consensus 442 n~-~s-~~~~~l~~l---~~~~~llLTgTP~ 467 (819)
.. .. .....+..+ .....+++||||-
T Consensus 133 ~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 133 DETFRAMLKSILRRLKRFKNIQIILLSATLP 163 (169)
T ss_dssp HTTHHHHHHHHHHHSHTTTTSEEEEEESSST
T ss_pred cccHHHHHHHHHHHhcCCCCCcEEEEeeCCC
Confidence 53 22 233333333 2356899999995
No 133
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.41 E-value=3.7e-12 Score=127.96 Aligned_cols=153 Identities=19% Similarity=0.195 Sum_probs=106.5
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHH-HHHHHhcC---CCCceEEEecC-cchHHHHHHHHHHcC--
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGE---RISPHLVVAPL-STLRNWEREFATWAP-- 357 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~-~l~~l~~~---~~~~~LIv~P~-~ll~qW~~e~~~~~p-- 357 (819)
.|+++|.++++.+ ..++++++..++|+|||.+++. ++..+... ...+++|++|. .++.|+...+..+..
T Consensus 21 ~~~~~Q~~~~~~~----~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPL----LSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHH----hcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 4899999999877 4488999999999999988544 44444443 23479999996 788899998888864
Q ss_pred CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccceEEEec
Q 003450 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVD 435 (819)
Q Consensus 358 ~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~lIvD 435 (819)
+.++..++|..........+ ....+|+|+|++.+.... ..+.-..++++|+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvD 150 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKL--------------------------KRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLD 150 (203)
T ss_pred CceEEEEECCCCHHHHHHHh--------------------------cCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEe
Confidence 67778888876654332221 135689999998765421 11222357899999
Q ss_pred ccccccCcc-c-HHHHHHHhcc-cCcEEEEeCCCC
Q 003450 436 EGHRLKNKD-S-KLFSSLKQYS-TRHRVLLTGTPL 467 (819)
Q Consensus 436 EaH~~kn~~-s-~~~~~l~~l~-~~~~llLTgTP~ 467 (819)
|+|.+.+.. . .....+..+. ....+++||||-
T Consensus 151 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 151 EADRMLDMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred ChHHhhccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 999986433 1 2223333444 456799999984
No 134
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.33 E-value=3.7e-11 Score=125.08 Aligned_cols=216 Identities=25% Similarity=0.297 Sum_probs=132.4
Q ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHHHHhc---CCC------------cchHHHHHHHHHHhcCCCcccCC-CCCCccC
Q 003450 532 KELILRVELSSKQKEYYKAILTRNYQILTRR---GGA------------QISLINVVMELRKLCCHPYMLEG-VEPDIED 595 (819)
Q Consensus 532 ~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~---~~~------------~~~~~~~~~~lr~~~~hp~l~~~-~~~~~~~ 595 (819)
.++.++++|+..|+++|+.++.-.+..+.+. ... ...+...+.+++.+|+||+|+-. .-+....
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll 83 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQLL 83 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccccc
Confidence 4678999999999999999998666554321 111 12345667889999999998633 2233334
Q ss_pred cHHHHHHhhhcCchHHHHHHHHHHH-----HhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHH---
Q 003450 596 TNESFKQLLESSGKLQLLDKMMVKL-----KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI--- 667 (819)
Q Consensus 596 ~~~~~~~l~~~s~Kl~~l~~ll~~l-----~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i--- 667 (819)
..+....+...|+|+++|..++..+ ...+.+++|.++...++|+|+.+|..+++.+.|+.|.....+....-
T Consensus 84 ~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~ 163 (297)
T PF11496_consen 84 LSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNG 163 (297)
T ss_dssp STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----
T ss_pred cchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCccc
Confidence 4556677788999999999999999 56678999999999999999999999999999999986655444332
Q ss_pred ---------HHhcCC-CCCcEEEEecccccccc----CCcccCCEEEEeCCCCCcchHH-HHhHhhhhcCCCCcEEEEEE
Q 003450 668 ---------DRFNAK-NSSRFCFLLSTRAGGLG----INLATADTVIIYDSDWNPHADL-QAMARAHRLGQTNKVMIFRL 732 (819)
Q Consensus 668 ---------~~F~~~-~~~~~v~L~st~a~~~G----inL~~a~~VI~~d~~wnp~~~~-Qa~gR~~R~Gq~~~V~v~~l 732 (819)
...... .....++|+++.-.... ++-...+.||-||+.+++.... |.+...+|-+ +.+-|++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~--~~~PiirL 241 (297)
T PF11496_consen 164 NTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN--RLCPIIRL 241 (297)
T ss_dssp ------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---------S--EEEE
T ss_pred ccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC--CCCcEEEE
Confidence 111111 12334456655544331 3334578999999999998754 4444444443 88999999
Q ss_pred EeCCCHHHHHHHHHHHh
Q 003450 733 ITRGSIEERMMQMTKKK 749 (819)
Q Consensus 733 i~~~TvEe~i~~~~~~K 749 (819)
+..+|+|..++..-...
T Consensus 242 v~~nSiEHi~L~~~~~~ 258 (297)
T PF11496_consen 242 VPSNSIEHIELCFPKSS 258 (297)
T ss_dssp EETTSHHHHHHHHTTTS
T ss_pred eeCCCHHHHHHHccCcc
Confidence 99999999988776644
No 135
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.30 E-value=8.4e-11 Score=142.22 Aligned_cols=87 Identities=14% Similarity=0.122 Sum_probs=66.4
Q ss_pred CCCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHH-HHHH---Hc
Q 003450 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWER-EFAT---WA 356 (819)
Q Consensus 282 ~~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~-e~~~---~~ 356 (819)
.|.+.||.|.+.+..+...+..++.+++-++||+|||+..+..+..... ..++++|.+|+ .|..|+.. ++.. .+
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~ 320 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-TEKPVVISTNTKVLQSQLLEKDIPLLNEIL 320 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHHHHHHHHc
Confidence 4568999999999988888888889999999999999998777655544 34599999997 55678744 5543 33
Q ss_pred C-CCeEEEEecChh
Q 003450 357 P-QMNVVMYVGTSQ 369 (819)
Q Consensus 357 p-~~~v~~~~g~~~ 369 (819)
+ ++++.+..|...
T Consensus 321 ~~~~~~~~~kG~~~ 334 (850)
T TIGR01407 321 NFKINAALIKGKSN 334 (850)
T ss_pred CCCceEEEEEcchh
Confidence 2 477888887653
No 136
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.30 E-value=4.1e-11 Score=115.41 Aligned_cols=149 Identities=14% Similarity=0.163 Sum_probs=95.8
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhcCCCC--ceEEEecC-cchHHHHHHHHHH---cC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERIS--PHLVVAPL-STLRNWEREFATW---AP 357 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~-i~~l~~l~~~~~~--~~LIv~P~-~ll~qW~~e~~~~---~p 357 (819)
.+.+-|.+++... ..|-.++..+..|.|||... ++.+..+ +...+ .+||+|.+ .+..|...|+.+| .|
T Consensus 64 hpsevqhecipqa----ilgmdvlcqaksgmgktavfvl~tlqqi-epv~g~vsvlvmchtrelafqi~~ey~rfskymP 138 (387)
T KOG0329|consen 64 HPSEVQHECIPQA----ILGMDVLCQAKSGMGKTAVFVLATLQQI-EPVDGQVSVLVMCHTRELAFQISKEYERFSKYMP 138 (387)
T ss_pred CchHhhhhhhhHH----hhcchhheecccCCCceeeeehhhhhhc-CCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCC
Confidence 3556788877543 45778889999999999663 3444433 22222 78999996 6667888887665 59
Q ss_pred CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhh--cccccCCccceEEEec
Q 003450 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL--DSASLKPIKWQCMIVD 435 (819)
Q Consensus 358 ~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~--~~~~l~~~~~~~lIvD 435 (819)
+.++.++.|+...+..-..+ ..-++|++.|++.+.. ....+...+....|+|
T Consensus 139 ~vkvaVFfGG~~Ikkdee~l--------------------------k~~PhivVgTPGrilALvr~k~l~lk~vkhFvlD 192 (387)
T KOG0329|consen 139 SVKVSVFFGGLFIKKDEELL--------------------------KNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLD 192 (387)
T ss_pred CceEEEEEcceeccccHHHH--------------------------hCCCeEEEcCcHHHHHHHHhccCchhhcceeehh
Confidence 99999999986544311111 1267999999998763 2344444566789999
Q ss_pred ccccccCcccHHHHHHHhc-----ccCcEEEEeCC
Q 003450 436 EGHRLKNKDSKLFSSLKQY-----STRHRVLLTGT 465 (819)
Q Consensus 436 EaH~~kn~~s~~~~~l~~l-----~~~~~llLTgT 465 (819)
||..+... -.+.+-+..+ +.+.++..|||
T Consensus 193 Ecdkmle~-lDMrRDvQEifr~tp~~KQvmmfsat 226 (387)
T KOG0329|consen 193 ECDKMLEQ-LDMRRDVQEIFRMTPHEKQVMMFSAT 226 (387)
T ss_pred hHHHHHHH-HHHHHHHHHHhhcCcccceeeeeeee
Confidence 99976431 1222222222 23345677777
No 137
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.29 E-value=7.3e-11 Score=132.76 Aligned_cols=154 Identities=19% Similarity=0.276 Sum_probs=104.2
Q ss_pred cccccCCCCCCCCCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchH-HHH
Q 003450 271 FQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR-NWE 349 (819)
Q Consensus 271 ~~~~~~~p~~~~~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~-qW~ 349 (819)
|..+...|...-+.+|-.+|++|+-.| ..|..+.+|+.|.+|||++|=.+++.. .....+++...|--.+. |=-
T Consensus 283 f~~lVpe~a~~~pFelD~FQk~Ai~~l----erg~SVFVAAHTSAGKTvVAEYAiala-q~h~TR~iYTSPIKALSNQKf 357 (1248)
T KOG0947|consen 283 FYQLVPEMALIYPFELDTFQKEAIYHL----ERGDSVFVAAHTSAGKTVVAEYAIALA-QKHMTRTIYTSPIKALSNQKF 357 (1248)
T ss_pred HHHhchhHHhhCCCCccHHHHHHHHHH----HcCCeEEEEecCCCCcchHHHHHHHHH-HhhccceEecchhhhhccchH
Confidence 444444444445578999999998755 889999999999999999975544432 22334888999965554 456
Q ss_pred HHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhh----cccccC
Q 003450 350 REFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----DSASLK 425 (819)
Q Consensus 350 ~e~~~~~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~----~~~~l~ 425 (819)
++|+.-+.+.+ .++|+.... .....+|+|-+.++. ..+.++
T Consensus 358 RDFk~tF~Dvg--LlTGDvqin---------------------------------PeAsCLIMTTEILRsMLYrgadliR 402 (1248)
T KOG0947|consen 358 RDFKETFGDVG--LLTGDVQIN---------------------------------PEASCLIMTTEILRSMLYRGADLIR 402 (1248)
T ss_pred HHHHHhccccc--eeecceeeC---------------------------------CCcceEeehHHHHHHHHhcccchhh
Confidence 77877665554 666764432 466799999998874 345555
Q ss_pred CccceEEEecccccccCcc-cHHHHHHHhcccCc--EEEEeCCC
Q 003450 426 PIKWQCMIVDEGHRLKNKD-SKLFSSLKQYSTRH--RVLLTGTP 466 (819)
Q Consensus 426 ~~~~~~lIvDEaH~~kn~~-s~~~~~l~~l~~~~--~llLTgTP 466 (819)
. .+.||+||+|.+.+.. +-.+..+.-+-.+| .|+||||-
T Consensus 403 D--vE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATV 444 (1248)
T KOG0947|consen 403 D--VEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATV 444 (1248)
T ss_pred c--cceEEEeeeeecccccccccceeeeeeccccceEEEEeccC
Confidence 5 4569999999996533 23344443333343 48999994
No 138
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.28 E-value=5.6e-10 Score=128.05 Aligned_cols=154 Identities=19% Similarity=0.175 Sum_probs=111.3
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEE
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~ 362 (819)
..|.+-|..+++.+..........+|.+.||+|||-..+.++...+..+ +.+||++|. ++..|-.+.|+..+ +.++.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-kqvLvLVPEI~Ltpq~~~rf~~rF-g~~v~ 274 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG-KQVLVLVPEIALTPQLLARFKARF-GAKVA 274 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC-CEEEEEeccccchHHHHHHHHHHh-CCChh
Confidence 4688999999998876653456789999999999999999888887766 689999995 88899888888877 48888
Q ss_pred EEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccccc--
Q 003450 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL-- 440 (819)
Q Consensus 363 ~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~~-- 440 (819)
++|+.-........+. +...+...|||.|...+-.-.. +-.+|||||=|.-
T Consensus 275 vlHS~Ls~~er~~~W~----------------------~~~~G~~~vVIGtRSAlF~Pf~-----~LGLIIvDEEHD~sY 327 (730)
T COG1198 275 VLHSGLSPGERYRVWR----------------------RARRGEARVVIGTRSALFLPFK-----NLGLIIVDEEHDSSY 327 (730)
T ss_pred hhcccCChHHHHHHHH----------------------HHhcCCceEEEEechhhcCchh-----hccEEEEeccccccc
Confidence 8888766554444432 1123567899999887743333 4469999999985
Q ss_pred cCcccHHH------HHHHhcccCcEEEEeCCC
Q 003450 441 KNKDSKLF------SSLKQYSTRHRVLLTGTP 466 (819)
Q Consensus 441 kn~~s~~~------~~l~~l~~~~~llLTgTP 466 (819)
|..++-.+ ........-..++-||||
T Consensus 328 Kq~~~prYhARdvA~~Ra~~~~~pvvLgSATP 359 (730)
T COG1198 328 KQEDGPRYHARDVAVLRAKKENAPVVLGSATP 359 (730)
T ss_pred cCCcCCCcCHHHHHHHHHHHhCCCEEEecCCC
Confidence 43332111 111222344678999999
No 139
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.25 E-value=1.1e-09 Score=126.03 Aligned_cols=85 Identities=14% Similarity=0.205 Sum_probs=67.4
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCC-hHHHHHHHHHhcCCCCCcEEEEecc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVG-GAERQIRIDRFNAKNSSRFCFLLST 684 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~-~~~R~~~i~~F~~~~~~~~v~L~st 684 (819)
...|..++.+-+....+.|..|||-+.++..-+.|...|...|+++..++.... .++-.++|.+ ++..+ .+-|+|
T Consensus 406 ~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~G--~VTIAT 481 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRKG--SITIAT 481 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCCC--cEEEec
Confidence 345888888888888889999999999999999999999999999999998643 3444455554 33333 369999
Q ss_pred ccccccCCcc
Q 003450 685 RAGGLGINLA 694 (819)
Q Consensus 685 ~a~~~GinL~ 694 (819)
..+|+|.|+.
T Consensus 482 NMAGRGTDI~ 491 (870)
T CHL00122 482 NMAGRGTDII 491 (870)
T ss_pred cccCCCcCee
Confidence 9999997753
No 140
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=99.23 E-value=2.5e-10 Score=125.62 Aligned_cols=241 Identities=18% Similarity=0.262 Sum_probs=138.2
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHhhc------CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec-CcchHHHH
Q 003450 277 SPEFLSGGSLHPYQLEGLNFLRFSWS------KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWE 349 (819)
Q Consensus 277 ~p~~~~~~~L~~~Q~~~v~~l~~~~~------~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P-~~ll~qW~ 349 (819)
.|. +..+.|...|+++|.|..+... ..-|.+|.|.-|.||-.+...+|...+-.+.++.|.+.= +.|-..-.
T Consensus 257 lP~-i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAE 335 (1300)
T KOG1513|consen 257 LPS-IDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAE 335 (1300)
T ss_pred ccc-CcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchh
Confidence 344 4557899999999998865543 223789999999999877766666655556666666655 55556677
Q ss_pred HHHHHHc-CCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccc-----
Q 003450 350 REFATWA-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS----- 423 (819)
Q Consensus 350 ~e~~~~~-p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~----- 423 (819)
+.+.... +++.|..+.. +.+ .. +........+-.|+++||..+......
T Consensus 336 RDL~DigA~~I~V~alnK----------~KY--ak-------------Iss~en~n~krGViFaTYtaLIGEs~~~~~ky 390 (1300)
T KOG1513|consen 336 RDLRDIGATGIAVHALNK----------FKY--AK-------------ISSKENTNTKRGVIFATYTALIGESQGKGGKY 390 (1300)
T ss_pred hchhhcCCCCccceehhh----------ccc--cc-------------ccccccCCccceeEEEeeHhhhhhccccCchH
Confidence 7777654 3444333211 111 00 011112234567999999998654221
Q ss_pred ---cCC-ccc------eEEEecccccccC-------cccHHHHHHHhc----ccCcEEEEeCCCCCCChhHHHhhhcccC
Q 003450 424 ---LKP-IKW------QCMIVDEGHRLKN-------KDSKLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFLD 482 (819)
Q Consensus 424 ---l~~-~~~------~~lIvDEaH~~kn-------~~s~~~~~l~~l----~~~~~llLTgTP~~n~~~el~~ll~~l~ 482 (819)
|.. .+| .+||+||||+.|| ..++..+.+..+ +..+++..|||-. .|--++.....
T Consensus 391 rtR~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGA----sEPrNMaYM~R 466 (1300)
T KOG1513|consen 391 RTRFRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGA----SEPRNMAYMVR 466 (1300)
T ss_pred HHHHHHHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCC----CCcchhhhhhh
Confidence 111 133 4899999999998 345566665554 5678899999953 22233333333
Q ss_pred CCC------CCChHHHHHHHhcc--chHHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHH
Q 003450 483 AGK------FGSLEEFQEEFKDI--NQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILT 553 (819)
Q Consensus 483 ~~~------~~~~~~f~~~~~~~--~~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~ 553 (819)
-+. |+++.+|....... ...+.+.-=.++-.-|+-|.+ .+......+..|+|+++-++.|.....
T Consensus 467 LGlWGegtaf~eF~eFi~AvEkRGvGAMEIVAMDMK~rGmYiARQL------SFkgVsFrieEv~ls~eF~k~Yn~a~~ 539 (1300)
T KOG1513|consen 467 LGLWGEGTAFPEFEEFIHAVEKRGVGAMEIVAMDMKLRGMYIARQL------SFKGVSFRIEEVPLSKEFRKVYNRAAE 539 (1300)
T ss_pred hccccCCCcCccHHHHHHHHHhcCCceeeeeehhhhhhhhhhhhhc------cccCceEEEEecccCHHHHHHHHHHHH
Confidence 333 44555554333210 000000000111111221111 355667888899999999999986544
No 141
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.21 E-value=2.7e-10 Score=133.47 Aligned_cols=156 Identities=19% Similarity=0.255 Sum_probs=106.3
Q ss_pred CCCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCC-
Q 003450 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM- 359 (819)
Q Consensus 282 ~~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~- 359 (819)
.+.+|-++|.+++.-| ..+.+++++.+||+|||+.+-.++..-...+. ++...+|. ++..|=.++|..-+.+.
T Consensus 116 ~~F~LD~fQ~~a~~~L----er~esVlV~ApTssGKTvVaeyAi~~al~~~q-rviYTsPIKALsNQKyrdl~~~fgdv~ 190 (1041)
T COG4581 116 YPFELDPFQQEAIAIL----ERGESVLVCAPTSSGKTVVAEYAIALALRDGQ-RVIYTSPIKALSNQKYRDLLAKFGDVA 190 (1041)
T ss_pred CCCCcCHHHHHHHHHH----hCCCcEEEEccCCCCcchHHHHHHHHHHHcCC-ceEeccchhhhhhhHHHHHHHHhhhhh
Confidence 4578999999998766 88999999999999999998777765554443 58999995 66666667776554322
Q ss_pred -eEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhh----cccccCCccceEEEe
Q 003450 360 -NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----DSASLKPIKWQCMIV 434 (819)
Q Consensus 360 -~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~----~~~~l~~~~~~~lIv 434 (819)
-+.+++|+..- .....++++|-+.++. ....+. +...||+
T Consensus 191 ~~vGL~TGDv~I---------------------------------N~~A~clvMTTEILRnMlyrg~~~~~--~i~~ViF 235 (1041)
T COG4581 191 DMVGLMTGDVSI---------------------------------NPDAPCLVMTTEILRNMLYRGSESLR--DIEWVVF 235 (1041)
T ss_pred hhccceecceee---------------------------------CCCCceEEeeHHHHHHHhccCccccc--ccceEEE
Confidence 23445554322 2355677777788864 223333 4457999
Q ss_pred cccccccCccc-HHHHH-HHhcccC-cEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHh
Q 003450 435 DEGHRLKNKDS-KLFSS-LKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFK 497 (819)
Q Consensus 435 DEaH~~kn~~s-~~~~~-l~~l~~~-~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~ 497 (819)
||.|.+..... -.+.. +..+... ..++||||- ++..+|..++.
T Consensus 236 DEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv--------------------~N~~EF~~Wi~ 281 (1041)
T COG4581 236 DEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATV--------------------PNAEEFAEWIQ 281 (1041)
T ss_pred EeeeeccccccchhHHHHHHhcCCCCcEEEEeCCC--------------------CCHHHHHHHHH
Confidence 99999965443 23333 3334443 679999994 56677777765
No 142
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=99.19 E-value=2.7e-10 Score=116.04 Aligned_cols=233 Identities=19% Similarity=0.220 Sum_probs=143.2
Q ss_pred CCCCCCCchhHHHHHHHHHHhhc------CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec-CcchHHHHHHH
Q 003450 280 FLSGGSLHPYQLEGLNFLRFSWS------KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREF 352 (819)
Q Consensus 280 ~~~~~~L~~~Q~~~v~~l~~~~~------~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P-~~ll~qW~~e~ 352 (819)
.+..+.|..-|+|+|-+..+.+. ...|.+|.|.+|.||..|+.++|......+.++.+.|.. ..|...-.+.+
T Consensus 32 ~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl 111 (303)
T PF13872_consen 32 VIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDL 111 (303)
T ss_pred HHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHH
Confidence 34567899999999998866655 367899999999999999999998877666665666665 57777777777
Q ss_pred HHHcCC-CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc-------ccc
Q 003450 353 ATWAPQ-MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS-------ASL 424 (819)
Q Consensus 353 ~~~~p~-~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~-------~~l 424 (819)
...... +.+..+..-+. ......+..|+++||.++.... ..+
T Consensus 112 ~DIG~~~i~v~~l~~~~~------------------------------~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl 161 (303)
T PF13872_consen 112 RDIGADNIPVHPLNKFKY------------------------------GDIIRLKEGVLFSTYSTLISESQSGGKYRSRL 161 (303)
T ss_pred HHhCCCcccceechhhcc------------------------------CcCCCCCCCccchhHHHHHhHHhccCCccchH
Confidence 765421 22221111000 0001235679999999997652 122
Q ss_pred CC-ccc------eEEEecccccccCccc------HHHHHHHhc----ccCcEEEEeCCCCCCChhHHHhhhccc---CC-
Q 003450 425 KP-IKW------QCMIVDEGHRLKNKDS------KLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFL---DA- 483 (819)
Q Consensus 425 ~~-~~~------~~lIvDEaH~~kn~~s------~~~~~l~~l----~~~~~llLTgTP~~n~~~el~~ll~~l---~~- 483 (819)
.. +.| .+||+||||+.||..+ +...++..+ +..+++..|||...+ +..|- ++.-| .+
T Consensus 162 ~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~Nma-Ym~RLGLWG~g 239 (303)
T PF13872_consen 162 DQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNMA-YMSRLGLWGPG 239 (303)
T ss_pred HHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-Cceee-eeeeccccCCC
Confidence 21 123 3899999999998654 555555444 456789999998632 22221 11112 11
Q ss_pred CCCCChHHHHHHHhccchHHHHHHHHHHHh--hHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHH
Q 003450 484 GKFGSLEEFQEEFKDINQEEQISRLHRMLA--PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKA 550 (819)
Q Consensus 484 ~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~--~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~ 550 (819)
..|.+..+|.+....-. ....+-+...++ -.+++|.. .+-.....++.++|++.|.++|+.
T Consensus 240 tpf~~~~~f~~a~~~gG-v~amE~vA~dlKa~G~yiaR~L-----Sf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 240 TPFPDFDDFLEAMEKGG-VGAMEMVAMDLKARGMYIARQL-----SFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred CCCCCHHHHHHHHHhcC-chHHHHHHHHHHhcchheeeec-----ccCCceEEEEEecCCHHHHHHhcC
Confidence 24667777776654321 111111111111 11222222 355667889999999999999974
No 143
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.17 E-value=2.1e-09 Score=123.42 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=68.3
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEecc-CChHHHHHHHHHhcCCCCCcEEEEecc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGK-VGGAERQIRIDRFNAKNSSRFCFLLST 684 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~-~~~~~R~~~i~~F~~~~~~~~v~L~st 684 (819)
...|..++.+-+..+.+.|..|||-+.++..-+.|...|...|+++..++.. ...++-.++|.+ ++..+ .+-|+|
T Consensus 421 ~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~G--aVTIAT 496 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKG--AVTIAT 496 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCCC--cEEEec
Confidence 3568888888888888999999999999999999999999999999999986 333444455554 33334 368999
Q ss_pred ccccccCCcc
Q 003450 685 RAGGLGINLA 694 (819)
Q Consensus 685 ~a~~~GinL~ 694 (819)
..+|+|.|+.
T Consensus 497 NMAGRGTDIk 506 (939)
T PRK12902 497 NMAGRGTDII 506 (939)
T ss_pred cCCCCCcCEe
Confidence 9999997754
No 144
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.15 E-value=3.7e-09 Score=122.66 Aligned_cols=120 Identities=18% Similarity=0.235 Sum_probs=97.8
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
...|..++.+-+..+.+.|..|||-+.++..-+.|...|...|+++..++.... ++-.++|.+= +..+ .+-|+|.
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~A--G~~G--aVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAEA--GQPG--TVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHhc--CCCC--cEEEecc
Confidence 456889999999999999999999999999999999999999999998887633 2223444332 3333 3699999
Q ss_pred cccccCCcc--------cCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEE
Q 003450 686 AGGLGINLA--------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (819)
Q Consensus 686 a~~~GinL~--------~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~ 730 (819)
.+|+|.|+. +.=+||.-..+-|...+.|..||++|.|.......|
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 999999976 345899999999999999999999999998665443
No 145
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.15 E-value=8e-09 Score=118.18 Aligned_cols=320 Identities=18% Similarity=0.231 Sum_probs=173.0
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcC-----
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP----- 357 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p----- 357 (819)
..|...|+- |.+.. ..|...-+.++||+|||.-.+.+..++...+ ++.++|+|+ .|+.|-.+.+.++..
T Consensus 81 ~~~ws~QR~---WakR~-~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kg-kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~ 155 (1187)
T COG1110 81 FRPWSAQRV---WAKRL-VRGKSFAIIAPTGVGKTTFGLLMSLYLAKKG-KRVYIIVPTTTLVRQVYERLKKFAEDAGSL 155 (1187)
T ss_pred CCchHHHHH---HHHHH-HcCCceEEEcCCCCchhHHHHHHHHHHHhcC-CeEEEEecCHHHHHHHHHHHHHHHhhcCCc
Confidence 346667876 54333 5666666667999999977666665554444 799999997 566788888888873
Q ss_pred CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEeccc
Q 003450 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEG 437 (819)
Q Consensus 358 ~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEa 437 (819)
+..++ ||+.-..+..-.-.+ +...++|||+|||-+.+.+..+.+.+.+||+|++|.+
T Consensus 156 ~~~~~-yh~~l~~~ekee~le----------------------~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDV 212 (1187)
T COG1110 156 DVLVV-YHSALPTKEKEEALE----------------------RIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDV 212 (1187)
T ss_pred ceeee-eccccchHHHHHHHH----------------------HHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccH
Confidence 33334 888633322111110 1123689999999999999999999999999999999
Q ss_pred ccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHHH
Q 003450 438 HRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (819)
Q Consensus 438 H~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~l 517 (819)
+.+-..+ +. +.-+..|+.|-... ..+...+..-.......+...++.+.+...-.
T Consensus 213 DA~Lkas-kN-----------------------vDriL~LlGf~eE~-i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~ 267 (1187)
T COG1110 213 DAILKAS-KN-----------------------VDRLLRLLGFSEEV-IESAYELIKLRRKLYGEKRAERVREELREVER 267 (1187)
T ss_pred HHHHhcc-cc-----------------------HHHHHHHcCCCHHH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 8762211 11 12222222211000 00000000000011111222222222222111
Q ss_pred HHhhhhhhhcCCCceEEEEEecCCH--HHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccC
Q 003450 518 RRVKKDVMKELPPKKELILRVELSS--KQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (819)
Q Consensus 518 rr~k~dv~~~lp~~~~~~v~~~ls~--~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~ 595 (819)
++.+. ...+..-.+-.....+ .-..+|+.++... .++. ..-||.+.+ -|
T Consensus 268 ~~~~~----r~k~g~LvvsSATg~~rg~R~~LfReLlgFe------vG~~-------~~~LRNIvD-~y----------- 318 (1187)
T COG1110 268 EREKK----RRKLGILVVSSATGKPRGSRLKLFRELLGFE------VGSG-------GEGLRNIVD-IY----------- 318 (1187)
T ss_pred HHHHh----ccCCceEEEeeccCCCCCchHHHHHHHhCCc------cCcc-------chhhhheee-ee-----------
Confidence 11000 0000000000000000 0111222221100 0000 001122110 00
Q ss_pred cHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecc---hhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcC
Q 003450 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQF---QHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (819)
Q Consensus 596 ~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~---~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~ 672 (819)
..++-+..+.++++.+ |.=.|||.+. ...++.|.++|+.+|+++..++.. +.+.++.|..
T Consensus 319 ---------~~~~~~e~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~ 381 (1187)
T COG1110 319 ---------VESESLEKVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEE 381 (1187)
T ss_pred ---------ccCccHHHHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhcc
Confidence 0123344555566555 5568999998 888999999999999999888762 3678999987
Q ss_pred CCCCcEEEEec----cccccccCCccc-CCEEEEeCCC
Q 003450 673 KNSSRFCFLLS----TRAGGLGINLAT-ADTVIIYDSD 705 (819)
Q Consensus 673 ~~~~~~v~L~s----t~a~~~GinL~~-a~~VI~~d~~ 705 (819)
++-+ +|+. ....-+|||||. +..+||+..|
T Consensus 382 Geid---vLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 382 GEVD---VLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred Ccee---EEEEecccccceeecCCchhheeEEEEecCC
Confidence 6655 3432 234578999996 8999999988
No 146
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=99.02 E-value=9.4e-09 Score=120.66 Aligned_cols=78 Identities=14% Similarity=0.140 Sum_probs=51.2
Q ss_pred cccEEEchhhHHhhc--ccccCCccceEEEecccccccCcccHHHHH--HHh-cccCcEEEEeCCCCC--CChhHHHhhh
Q 003450 406 KFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRLKNKDSKLFSS--LKQ-YSTRHRVLLTGTPLQ--NNLDELFMLM 478 (819)
Q Consensus 406 ~~~vvi~ty~~l~~~--~~~l~~~~~~~lIvDEaH~~kn~~s~~~~~--l~~-l~~~~~llLTgTP~~--n~~~el~~ll 478 (819)
+..|+++|+..+..| ...+..-.+..|||||||++.+..+..+-+ ... -+..++.++|+.|-. .....+-..+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~vm 86 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETKM 86 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHHH
Confidence 345899999988866 334444577899999999997655443332 222 245689999999964 2344555555
Q ss_pred cccCC
Q 003450 479 HFLDA 483 (819)
Q Consensus 479 ~~l~~ 483 (819)
.-|..
T Consensus 87 k~L~i 91 (814)
T TIGR00596 87 RNLFL 91 (814)
T ss_pred HHhCc
Confidence 54443
No 147
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.96 E-value=4e-09 Score=116.15 Aligned_cols=141 Identities=18% Similarity=0.274 Sum_probs=93.3
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEE
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~ 362 (819)
.+|-|+|..++.-+ .++..+++.+-|..|||+.|-.+++.-+..+ .+++...|- +|-.|=.+|+..-+.+ |.
T Consensus 128 F~LDpFQ~~aI~Ci----dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k-QRVIYTSPIKALSNQKYREl~~EF~D--VG 200 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCI----DRGESVLVSAHTSAGKTVVAEYAIAMSLREK-QRVIYTSPIKALSNQKYRELLEEFKD--VG 200 (1041)
T ss_pred cccCchHhhhhhhh----cCCceEEEEeecCCCcchHHHHHHHHHHHhc-CeEEeeChhhhhcchhHHHHHHHhcc--cc
Confidence 67999999998644 8899999999999999998755544433322 388999995 5545556777654433 33
Q ss_pred EEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhh----cccccCCccceEEEecccc
Q 003450 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----DSASLKPIKWQCMIVDEGH 438 (819)
Q Consensus 363 ~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~----~~~~l~~~~~~~lIvDEaH 438 (819)
..+|+..- .+....+|+|-+.++. ..+..+.+. .||+||.|
T Consensus 201 LMTGDVTI---------------------------------nP~ASCLVMTTEILRsMLYRGSEvmrEVa--WVIFDEIH 245 (1041)
T KOG0948|consen 201 LMTGDVTI---------------------------------NPDASCLVMTTEILRSMLYRGSEVMREVA--WVIFDEIH 245 (1041)
T ss_pred eeecceee---------------------------------CCCCceeeeHHHHHHHHHhccchHhheee--eEEeeeeh
Confidence 34444221 1356689999998874 344455555 49999999
Q ss_pred cccCcccHH-H-HHHHhccc-CcEEEEeCCC
Q 003450 439 RLKNKDSKL-F-SSLKQYST-RHRVLLTGTP 466 (819)
Q Consensus 439 ~~kn~~s~~-~-~~l~~l~~-~~~llLTgTP 466 (819)
.++...... + ..+.-++. -+-++||||-
T Consensus 246 YMRDkERGVVWEETIIllP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 246 YMRDKERGVVWEETIILLPDNVRFVFLSATI 276 (1041)
T ss_pred hccccccceeeeeeEEeccccceEEEEeccC
Confidence 997654322 1 12222333 3558999993
No 148
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.95 E-value=2.2e-10 Score=110.47 Aligned_cols=50 Identities=48% Similarity=1.133 Sum_probs=45.3
Q ss_pred cccccccccCCCC---eEecCCCCccccccCcCCCCCCCCCCCcccCccCCCC
Q 003450 50 KDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (819)
Q Consensus 50 ~~~~C~~c~~~~~---~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~ 99 (819)
++.+|.+||.+++ ||+||.|+++||++||.||+..+|+|.|.|..|.+..
T Consensus 280 eck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~~ 332 (336)
T KOG1244|consen 280 ECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEEL 332 (336)
T ss_pred ecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHHH
Confidence 6788999997654 9999999999999999999999999999999998643
No 149
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.94 E-value=4.4e-07 Score=108.62 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=62.6
Q ss_pred CCCCCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcch-HHH-HHHHHHHc-
Q 003450 280 FLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNW-EREFATWA- 356 (819)
Q Consensus 280 ~~~~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll-~qW-~~e~~~~~- 356 (819)
..++.+.|+-|.+.++.+...+..+...++..+||+|||+..+..+.... ...+++|.+|+..+ .|- .+++..+.
T Consensus 240 ~~~~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~--~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~ 317 (820)
T PRK07246 240 ALLGLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS--DQRQIIVSVPTKILQDQIMAEEVKAIQE 317 (820)
T ss_pred ccCCCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHHHHHH
Confidence 44567899999999999988888888899999999999988766544322 23599999998555 453 35554432
Q ss_pred -CCCeEEEEecCh
Q 003450 357 -PQMNVVMYVGTS 368 (819)
Q Consensus 357 -p~~~v~~~~g~~ 368 (819)
.++++..+.|..
T Consensus 318 ~~~~~~~~~kg~~ 330 (820)
T PRK07246 318 VFHIDCHSLKGPQ 330 (820)
T ss_pred hcCCcEEEEECCc
Confidence 256666666543
No 150
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.93 E-value=1.2e-07 Score=115.53 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=66.6
Q ss_pred CCCCCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcch-HH-HHHHH---HH
Q 003450 280 FLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RN-WEREF---AT 354 (819)
Q Consensus 280 ~~~~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll-~q-W~~e~---~~ 354 (819)
..++.+.||-|.+-++.+...+..+..+++-++||+|||+..+..+........+|++|-+++..+ .| +.+++ .+
T Consensus 252 ~~~~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~ 331 (928)
T PRK08074 252 AMPKYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEKDIPLLQK 331 (928)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHhhHHHHHH
Confidence 445678999999999999888888888999999999999988766655444444688999997554 45 34443 44
Q ss_pred HcC-CCeEEEEecChh
Q 003450 355 WAP-QMNVVMYVGTSQ 369 (819)
Q Consensus 355 ~~p-~~~v~~~~g~~~ 369 (819)
.++ ++++.+..|...
T Consensus 332 ~~~~~~~~~~lKGr~n 347 (928)
T PRK08074 332 IFPFPVEAALLKGRSH 347 (928)
T ss_pred HcCCCceEEEEEcccc
Confidence 443 577887777553
No 151
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.87 E-value=3.2e-08 Score=119.71 Aligned_cols=139 Identities=19% Similarity=0.174 Sum_probs=90.5
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCC-ceEEEecC-cchHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhc
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFY 380 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~-~~LIv~P~-~ll~qW~~e~~~~~p~~~v~~~~g~~~~r~~~~~~e~~ 380 (819)
.+++|++.+-+|+|||++++-++..+...... .++|||.. -|-.|-.++|..+........ ...+...+++.-
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk~~l-- 346 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELKELL-- 346 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHHHHH--
Confidence 34689999999999999998887777665333 67777774 666788999999875433322 222222222210
Q ss_pred CCCCccccccccCCccccccccccccccEEEchhhHHhhcccc----cCCccceEEEecccccccCcccHHHHHHHh-cc
Q 003450 381 FPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS----LKPIKWQCMIVDEGHRLKNKDSKLFSSLKQ-YS 455 (819)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~----l~~~~~~~lIvDEaH~~kn~~s~~~~~l~~-l~ 455 (819)
....-.|+|||-+.+...... ....+.-+||+|||||.- .+...+.+.. ++
T Consensus 347 ----------------------~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ--~G~~~~~~~~~~~ 402 (962)
T COG0610 347 ----------------------EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ--YGELAKLLKKALK 402 (962)
T ss_pred ----------------------hcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc--ccHHHHHHHHHhc
Confidence 001346999999988654322 223355689999999963 3344444443 34
Q ss_pred cCcEEEEeCCCCCCC
Q 003450 456 TRHRVLLTGTPLQNN 470 (819)
Q Consensus 456 ~~~~llLTgTP~~n~ 470 (819)
...-++.||||+...
T Consensus 403 ~a~~~gFTGTPi~~~ 417 (962)
T COG0610 403 KAIFIGFTGTPIFKE 417 (962)
T ss_pred cceEEEeeCCccccc
Confidence 567799999998654
No 152
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.87 E-value=9.4e-08 Score=108.51 Aligned_cols=162 Identities=19% Similarity=0.198 Sum_probs=107.9
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-CCCceEEEecC-cchHHHHHHHHHHc--CCCe
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPL-STLRNWEREFATWA--PQMN 360 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~-~~~~~LIv~P~-~ll~qW~~e~~~~~--p~~~ 360 (819)
..-.+|.+-+.-+ ..+..++|..+|.+|||...-.++...++. ..+-++.|+|. +++.|-..++...+ +.+.
T Consensus 511 ~Pd~WQ~elLDsv----Dr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 511 CPDEWQRELLDSV----DRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred CCcHHHHHHhhhh----hcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 3456888876544 788899999999999999988888877665 44588999995 77788777765433 2211
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccc---cCC--ccceEEEec
Q 003450 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS---LKP--IKWQCMIVD 435 (819)
Q Consensus 361 v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~---l~~--~~~~~lIvD 435 (819)
.|..-.-...++|. .....++|+||-++-+..-... -.. -+..++|+|
T Consensus 587 ----rg~sl~g~ltqEYs-----------------------inp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfD 639 (1330)
T KOG0949|consen 587 ----RGVSLLGDLTQEYS-----------------------INPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFD 639 (1330)
T ss_pred ----cchhhHhhhhHHhc-----------------------CCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEec
Confidence 12222222333332 1235788999999877542111 111 145699999
Q ss_pred ccccccCcc-cHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhc
Q 003450 436 EGHRLKNKD-SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH 479 (819)
Q Consensus 436 EaH~~kn~~-s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~ 479 (819)
|.|.+.+.. +.....+..+..--.|.||||- +|+..++-.++
T Consensus 640 EVH~iG~~ed~l~~Eqll~li~CP~L~LSATi--gN~~l~qkWln 682 (1330)
T KOG0949|consen 640 EVHLIGNEEDGLLWEQLLLLIPCPFLVLSATI--GNPNLFQKWLN 682 (1330)
T ss_pred hhhhccccccchHHHHHHHhcCCCeeEEeccc--CCHHHHHHHHH
Confidence 999998864 5556666666666678999994 66666665555
No 153
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.85 E-value=1.8e-07 Score=111.23 Aligned_cols=72 Identities=21% Similarity=0.222 Sum_probs=58.8
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-C-CCceEEEecC-cchHHHHHHHHHH
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-R-ISPHLVVAPL-STLRNWEREFATW 355 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~-~-~~~~LIv~P~-~ll~qW~~e~~~~ 355 (819)
..+||.|.+.+..+......++++++-.+||+|||+.+|+.+.+.... + ..++++.+.+ +-+.|-.+|+++.
T Consensus 9 ~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 9 EKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred CCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 347999999999999999999999999999999999988776665442 2 2367777775 7778999999884
No 154
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.84 E-value=2.2e-07 Score=102.63 Aligned_cols=111 Identities=19% Similarity=0.249 Sum_probs=78.9
Q ss_pred eEEEEecchhHHHHHHHHHhhC----C--C--eEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCC
Q 003450 626 RVLIYSQFQHMLDLLEDYLTFK----K--W--QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATAD 697 (819)
Q Consensus 626 kvlIFs~~~~~ld~L~~~L~~~----g--~--~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~ 697 (819)
-+|||-.-....+.+.+.|... + . -+.-++|+++.++..++ |...+.+..-+++||+.+...|.+++..
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecceE
Confidence 6899988877776666666432 2 1 24568999998877665 6655655556899999999999999988
Q ss_pred EEE--------EeCCCCC-------cchHHHHhHhhhhcCCCCcEEEEEEEeCCCHH
Q 003450 698 TVI--------IYDSDWN-------PHADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (819)
Q Consensus 698 ~VI--------~~d~~wn-------p~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvE 739 (819)
.|| .|+|.-- |..-.||.-|++|.|.+.+.++|||+++.-++
T Consensus 337 YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 337 YVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYD 393 (674)
T ss_pred EEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHh
Confidence 775 3444211 22345666666677777888899999988773
No 155
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.84 E-value=6.9e-08 Score=100.09 Aligned_cols=95 Identities=17% Similarity=0.255 Sum_probs=85.5
Q ss_pred CceEEEEecchhHHHHHHHHHhhC---CCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEE
Q 003450 624 GHRVLIYSQFQHMLDLLEDYLTFK---KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (819)
Q Consensus 624 g~kvlIFs~~~~~ld~L~~~L~~~---g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI 700 (819)
-.|.||||....-.|-|+.++..+ .|+..-++|+..+.+|.+-++.|... .+.|||+|+++++|||++....+|
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~---dvkflictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKF---DVKFLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhc---CeEEEEEehhhhccccccCCceEE
Confidence 458999999999999999999875 36788899999999999999999664 345999999999999999999999
Q ss_pred EeCCCCCcchHHHHhHhhhhc
Q 003450 701 IYDSDWNPHADLQAMARAHRL 721 (819)
Q Consensus 701 ~~d~~wnp~~~~Qa~gR~~R~ 721 (819)
....|-..++|.+|+||++|.
T Consensus 582 nvtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EEecCcccchhhhhhhccchh
Confidence 999999999999999988874
No 156
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=98.83 E-value=6.9e-10 Score=85.14 Aligned_cols=49 Identities=41% Similarity=0.605 Sum_probs=42.3
Q ss_pred hhhhHhhhhcCCcce---eeEeeecccccccccccCCCCcccc-HHHHHHHHH
Q 003450 193 TVDRILACRGEDDEK---EYLVKYKELSYDECYWEYESDISAF-QPEIERFIK 241 (819)
Q Consensus 193 ~~eril~~~~~~~~~---~~lvKw~~l~y~~~TWE~~~~~~~~-~~~~~~~~~ 241 (819)
+|||||+++...+.. +|||||+|++|++||||+.+++... +..+++|.+
T Consensus 2 ~Ve~Il~~r~~~~~~~~~~ylVkW~g~~~~~~tWe~~~~l~~~~~~li~~f~~ 54 (55)
T PF00385_consen 2 EVERILDHRVVKGGNKVYEYLVKWKGYPYSENTWEPEENLKNCFPELIEEFEK 54 (55)
T ss_dssp EEEEEEEEEEETTEESEEEEEEEETTSSGGGEEEEEGGGCSSHCHHHHHHHHH
T ss_pred EEEEEEEEEEeCCCcccEEEEEEECCCCCCCCeEeeHHHHhHhhHHHHHHHhC
Confidence 689999999666555 9999999999999999999988765 667999975
No 157
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.81 E-value=1.8e-06 Score=98.87 Aligned_cols=79 Identities=14% Similarity=0.112 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc-CCCCceEEEecC-cchHHHHHHHHHHc-----CCCeEE
Q 003450 290 QLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ERISPHLVVAPL-STLRNWEREFATWA-----PQMNVV 362 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~-~~~~~~LIv~P~-~ll~qW~~e~~~~~-----p~~~v~ 362 (819)
|.+.+..+...+..++..++-.+||+|||+..+..+..... ....++||.+|+ .+..|+.+++..+. ..+++.
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~ 81 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAG 81 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEE
Confidence 77888888888888889999999999999987776654433 234699999997 77788888877654 256677
Q ss_pred EEecCh
Q 003450 363 MYVGTS 368 (819)
Q Consensus 363 ~~~g~~ 368 (819)
+..|..
T Consensus 82 ~lkGr~ 87 (636)
T TIGR03117 82 FFPGSQ 87 (636)
T ss_pred EEECCc
Confidence 777754
No 158
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.80 E-value=1.9e-07 Score=109.20 Aligned_cols=110 Identities=17% Similarity=0.220 Sum_probs=81.7
Q ss_pred CceEEEEecchhHHHHHHHHHhh----CCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEE
Q 003450 624 GHRVLIYSQFQHMLDLLEDYLTF----KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (819)
Q Consensus 624 g~kvlIFs~~~~~ld~L~~~L~~----~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~V 699 (819)
..-+|||-.-....+...+.|.. ....+.-++|..+.++..++ |+....+..-++++|+.+.++|+++++..|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 45799999888888888888876 35778889999999988775 555454533379999999999999999888
Q ss_pred EE--------eCCCC----------CcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHH
Q 003450 700 II--------YDSDW----------NPHADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (819)
Q Consensus 700 I~--------~d~~w----------np~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvE 739 (819)
|- ||+.- +-++..||.||++| +.+-..|||.+++.++
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR---~~pGicyRLyse~~~~ 390 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGR---TGPGICYRLYSEEDFL 390 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhcccccc---CCCceEEEecCHHHHH
Confidence 63 33322 33345577777777 4556789999986655
No 159
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.80 E-value=2.7e-07 Score=109.69 Aligned_cols=102 Identities=19% Similarity=0.198 Sum_probs=74.9
Q ss_pred hcCceEEEEecchhHHHHHHHHHhhCCCe-EEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCccc--CCE
Q 003450 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQ-YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLAT--ADT 698 (819)
Q Consensus 622 ~~g~kvlIFs~~~~~ld~L~~~L~~~g~~-~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~--a~~ 698 (819)
..+.++|||..+-.++..+.+.+...... .....|. ..+.+.+++|.....+ .+++.+....||||+++ +..
T Consensus 477 ~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~---~~~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~~ 551 (654)
T COG1199 477 ASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGE---DEREELLEKFKASGEG--LILVGGGSFWEGVDFPGDALRL 551 (654)
T ss_pred hcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCC---CcHHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCeeE
Confidence 34558999999989999999999876653 3333343 3445899999886654 48999999999999996 688
Q ss_pred EEEeCCCCC-cc-----------------------------hHHHHhHhhhhcCCCCcEE
Q 003450 699 VIIYDSDWN-PH-----------------------------ADLQAMARAHRLGQTNKVM 728 (819)
Q Consensus 699 VI~~d~~wn-p~-----------------------------~~~Qa~gR~~R~Gq~~~V~ 728 (819)
||+.-.|+= |. ...|++||+.|--+.+-|.
T Consensus 552 vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~i 611 (654)
T COG1199 552 VVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVI 611 (654)
T ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEE
Confidence 999877763 11 2259999999955555443
No 160
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.78 E-value=5.5e-07 Score=105.04 Aligned_cols=127 Identities=19% Similarity=0.251 Sum_probs=92.6
Q ss_pred chHHHHHHHHHHHHhc--CceEEEEecchhHHHHHHHHHhh----C---CCeEEEEeccCChHHHHHHHHHhcCCCCCcE
Q 003450 608 GKLQLLDKMMVKLKEQ--GHRVLIYSQFQHMLDLLEDYLTF----K---KWQYERIDGKVGGAERQIRIDRFNAKNSSRF 678 (819)
Q Consensus 608 ~Kl~~l~~ll~~l~~~--g~kvlIFs~~~~~ld~L~~~L~~----~---g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~ 678 (819)
-...++..++..+.+. ...+|||-.-...+..+.+.|.. . .+-+..+++.++..+.+.+ |+.+..+..
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~R 471 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTR 471 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcc
Confidence 4566677777766554 35899999988877777777753 2 2567789999998877776 666677666
Q ss_pred EEEeccccccccCCcccCCEEEE--------eCCCC----------CcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHH
Q 003450 679 CFLLSTRAGGLGINLATADTVII--------YDSDW----------NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (819)
Q Consensus 679 v~L~st~a~~~GinL~~a~~VI~--------~d~~w----------np~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe 740 (819)
-++++|..+..+|.+.++-+||- ||+.- +.++-.||.||++| ..+-..|+++++.-.+-
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRSRYEK 548 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechhhhhh
Confidence 68999999999999999877763 44432 34455688888888 45567888888764443
No 161
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.76 E-value=1.2e-07 Score=108.30 Aligned_cols=72 Identities=21% Similarity=0.184 Sum_probs=54.5
Q ss_pred eEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeC----CCCCcchHHHHhHhhhhcCCC
Q 003450 650 QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYD----SDWNPHADLQAMARAHRLGQT 724 (819)
Q Consensus 650 ~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d----~~wnp~~~~Qa~gR~~R~Gq~ 724 (819)
.++..+.+.+.++|+.+-..|+.+ .+.++++|...+-|+||++-..+|=.- +.-.-..|.|.+||++|.|-.
T Consensus 524 GvAyHhaGLT~eER~~iE~afr~g---~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gid 599 (1008)
T KOG0950|consen 524 GVAYHHAGLTSEEREIIEAAFREG---NIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGID 599 (1008)
T ss_pred cceecccccccchHHHHHHHHHhc---CeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccc
Confidence 466777888999999988899764 334788888899999999766555432 223455789999999999853
No 162
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.74 E-value=5.3e-07 Score=103.03 Aligned_cols=113 Identities=11% Similarity=0.303 Sum_probs=82.7
Q ss_pred CchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEecccc
Q 003450 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (819)
Q Consensus 607 s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a 686 (819)
+....+...|+..+. .|+++.|||......+++++++...+.++..++|..+..+. +.+ +.+.+++-|.+
T Consensus 266 ~~~~tF~~~L~~~L~-~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W-----~~~~VviYT~~ 335 (824)
T PF02399_consen 266 NDETTFFSELLARLN-AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW-----KKYDVVIYTPV 335 (824)
T ss_pred cchhhHHHHHHHHHh-CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc-----cceeEEEEece
Confidence 445566777777765 59999999999999999999999889999999987665522 223 23447888899
Q ss_pred ccccCCccc--CCEEEEe--CCCCCcch--HHHHhHhhhhcCCCCcEEEE
Q 003450 687 GGLGINLAT--ADTVIIY--DSDWNPHA--DLQAMARAHRLGQTNKVMIF 730 (819)
Q Consensus 687 ~~~GinL~~--a~~VI~~--d~~wnp~~--~~Qa~gR~~R~Gq~~~V~v~ 730 (819)
...|+++-. .+.|..| .....|.. ..|.+||+..+.. +++.||
T Consensus 336 itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~ 384 (824)
T PF02399_consen 336 ITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVY 384 (824)
T ss_pred EEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEE
Confidence 999999864 4556555 33344553 5899999998864 345444
No 163
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.70 E-value=4.3e-07 Score=99.48 Aligned_cols=104 Identities=16% Similarity=0.152 Sum_probs=70.2
Q ss_pred CCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEe--------CCC----------CCcc
Q 003450 648 KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIY--------DSD----------WNPH 709 (819)
Q Consensus 648 g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~--------d~~----------wnp~ 709 (819)
++.+.-+...++.+-..++ |+..+.+..-++++|+.+.+.|.+++...||-- .|. -+.+
T Consensus 597 ~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 6677778888887755554 665566666689999999999999998888642 221 2233
Q ss_pred hHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHH---HHhhhhHHHHh
Q 003450 710 ADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT---KKKMVLEHLVV 757 (819)
Q Consensus 710 ~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~---~~K~~l~~~v~ 757 (819)
+-.||.|||+| +.+-..||++|+.++...|+..- -++.++.+.|+
T Consensus 674 nA~QRaGRAGR---t~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVL 721 (1042)
T KOG0924|consen 674 NADQRAGRAGR---TGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVL 721 (1042)
T ss_pred cchhhccccCC---CCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHH
Confidence 33455555555 66778999999999988887422 13344555444
No 164
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.70 E-value=2.3e-07 Score=99.68 Aligned_cols=100 Identities=21% Similarity=0.233 Sum_probs=78.5
Q ss_pred hcCceEEEEecchhHHHHHHHHHhhCCCe-EEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEE
Q 003450 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQ-YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (819)
Q Consensus 622 ~~g~kvlIFs~~~~~ld~L~~~L~~~g~~-~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI 700 (819)
..|..++-||.. -+-.+...+...|.. .+.+.|+.+++.|.+.-..||++.+.. .+|++|+|.|.|+||. .++||
T Consensus 356 k~GDCvV~FSkk--~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~-dvlVAsDAIGMGLNL~-IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSKK--DIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNEC-DVLVASDAIGMGLNLN-IRRII 431 (700)
T ss_pred CCCCeEEEeehh--hHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCcc-ceEEeecccccccccc-eeEEE
Confidence 358888888864 223344555566655 999999999999999999999966554 4899999999999995 78899
Q ss_pred EeCCC---------CCcchHHHHhHhhhhcCCCC
Q 003450 701 IYDSD---------WNPHADLQAMARAHRLGQTN 725 (819)
Q Consensus 701 ~~d~~---------wnp~~~~Qa~gR~~R~Gq~~ 725 (819)
|++.- -...+..|..|||+|.|..-
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~ 465 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKY 465 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccCC
Confidence 98764 33456779999999998763
No 165
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.66 E-value=6.2e-09 Score=113.46 Aligned_cols=47 Identities=47% Similarity=1.129 Sum_probs=43.0
Q ss_pred ccccccccCCCCe---EecCCCCccccccCcCCCC--CCCCCCCcccCccCC
Q 003450 51 DDSCQACGESENL---MSCDTCTYAYHAKCLVPPL--KAPPSGSWRCPECVS 97 (819)
Q Consensus 51 ~~~C~~c~~~~~~---~~C~~C~~~~H~~c~~p~~--~~~~~~~w~C~~c~~ 97 (819)
.++|..|++.|.. ++||+|+++||+.||.||+ ..+|.|.|+|++|..
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~ 304 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKI 304 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCee
Confidence 4599999999875 9999999999999999995 679999999999985
No 166
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.65 E-value=3e-07 Score=108.04 Aligned_cols=143 Identities=17% Similarity=0.264 Sum_probs=91.3
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcC-CCCceEEEecCcch-HHHHHH---------HHHHcCC--CeEEEEecChhH-
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTL-RNWERE---------FATWAPQ--MNVVMYVGTSQA- 370 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~-~~~~~LIv~P~~ll-~qW~~e---------~~~~~p~--~~v~~~~g~~~~- 370 (819)
.+..+.++||+|||.+++..+.+|... +...+|||||...+ .....- |...+++ +...+|.+.+..
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 467899999999999999999998765 55699999997444 333322 2222322 344455543311
Q ss_pred ------HHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhccc--cc--------CCccc-----
Q 003450 371 ------RNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SL--------KPIKW----- 429 (819)
Q Consensus 371 ------r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l--------~~~~~----- 429 (819)
...++.+- ..........+|+|+|-+++..... .. ....|
T Consensus 140 ~gr~~~~~~i~~Fa-------------------~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~ 200 (986)
T PRK15483 140 SGRKNFPAQLSNFV-------------------KASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAA 200 (986)
T ss_pred cccccChHHHHHHH-------------------hccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHh
Confidence 11222221 0111122357899999999876421 11 11233
Q ss_pred --eEEEecccccccCcccHHHHHHHhcccCcEEEEeCCCC
Q 003450 430 --QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPL 467 (819)
Q Consensus 430 --~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~ 467 (819)
-+||+||+|++.. ..+.+.++..+...+.|..|||--
T Consensus 201 ~~PivIiDEPh~~~~-~~k~~~~i~~lnpl~~lrysAT~~ 239 (986)
T PRK15483 201 TRPVVIIDEPHRFPR-DNKFYQAIEALKPQMIIRFGATFP 239 (986)
T ss_pred CCCEEEEECCCCCCc-chHHHHHHHhcCcccEEEEeeecC
Confidence 3899999999965 345778899999999999999964
No 167
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.65 E-value=4.2e-06 Score=96.48 Aligned_cols=115 Identities=20% Similarity=0.205 Sum_probs=90.7
Q ss_pred hcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEecc
Q 003450 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (819)
Q Consensus 605 ~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st 684 (819)
....|..++.+-+......|.+|||-+.++..-+.+...|...|++...++..-. +|+.-|-.+ ++..+ .+-++|
T Consensus 410 t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~-AG~~g--aVTiAT 484 (822)
T COG0653 410 TEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQ-AGQPG--AVTIAT 484 (822)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhh-cCCCC--cccccc
Confidence 3456888889999999999999999999999999999999999999999988654 343333343 22333 368899
Q ss_pred ccccccCCccc-CC----------EEEEeCCCCCcchHHHHhHhhhhcCCC
Q 003450 685 RAGGLGINLAT-AD----------TVIIYDSDWNPHADLQAMARAHRLGQT 724 (819)
Q Consensus 685 ~a~~~GinL~~-a~----------~VI~~d~~wnp~~~~Qa~gR~~R~Gq~ 724 (819)
..+|+|-|+.- .+ +||=-.-.-+-..+.|-.||++|.|-.
T Consensus 485 NMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp 535 (822)
T COG0653 485 NMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP 535 (822)
T ss_pred ccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCc
Confidence 99999999863 32 566666677777888999999999943
No 168
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.65 E-value=1.1e-07 Score=86.08 Aligned_cols=131 Identities=18% Similarity=0.125 Sum_probs=70.1
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhcC
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYF 381 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~p~~~v~~~~g~~~~r~~~~~~e~~~ 381 (819)
.++.-.+|-..+|+|||...+.-+..-.-....++||+.|+-++ .+|+.+...+..+.. .-....+
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvv---a~em~~aL~~~~~~~-~t~~~~~---------- 67 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVV---AEEMYEALKGLPVRF-HTNARMR---------- 67 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHH---HHHHHHHTTTSSEEE-ESTTSS-----------
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHH---HHHHHHHHhcCCccc-Cceeeec----------
Confidence 45667789999999999877664433222234599999998655 334444443444322 2111100
Q ss_pred CCCccccccccCCccccccccccccccEEEchhhHHhhc-ccccCCccceEEEecccccccCcccHHHH-HHHhcc---c
Q 003450 382 PKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD-SASLKPIKWQCMIVDEGHRLKNKDSKLFS-SLKQYS---T 456 (819)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~-~~~l~~~~~~~lIvDEaH~~kn~~s~~~~-~l~~l~---~ 456 (819)
.....--|-+++|.++... .......+|++||+||||-. .+.|-... .+..+. .
T Consensus 68 --------------------~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~ 126 (148)
T PF07652_consen 68 --------------------THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGE 126 (148)
T ss_dssp -----------------------SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS
T ss_pred --------------------cccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccC
Confidence 0113345777888887642 33444568999999999985 33333222 223331 2
Q ss_pred CcEEEEeCCCC
Q 003450 457 RHRVLLTGTPL 467 (819)
Q Consensus 457 ~~~llLTgTP~ 467 (819)
...+++||||-
T Consensus 127 ~~~i~mTATPP 137 (148)
T PF07652_consen 127 AKVIFMTATPP 137 (148)
T ss_dssp -EEEEEESS-T
T ss_pred eeEEEEeCCCC
Confidence 36799999993
No 169
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.64 E-value=5.7e-06 Score=97.85 Aligned_cols=87 Identities=9% Similarity=0.096 Sum_probs=58.9
Q ss_pred CCCCCchhHHHHHHHHHHhhcC-----CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcch-HH-HHHHHH-
Q 003450 282 SGGSLHPYQLEGLNFLRFSWSK-----QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RN-WEREFA- 353 (819)
Q Consensus 282 ~~~~L~~~Q~~~v~~l~~~~~~-----~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll-~q-W~~e~~- 353 (819)
++.+.|+-|.+.++.+...+.. ++.+++-++||+|||+..+..+........++++|-+.+..+ .| +.+++.
T Consensus 22 ~~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~~kDlP~ 101 (697)
T PRK11747 22 PGFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLVSKDLPL 101 (697)
T ss_pred CCCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHhhhhhH
Confidence 4567899999999888877776 466788899999999987766655433344577776666444 44 344543
Q ss_pred --HHc-CCCeEEEEecCh
Q 003450 354 --TWA-PQMNVVMYVGTS 368 (819)
Q Consensus 354 --~~~-p~~~v~~~~g~~ 368 (819)
+.. .++++.+..|..
T Consensus 102 l~~~l~~~~~~~llKGr~ 119 (697)
T PRK11747 102 LLKISGLDFKFTLAKGRG 119 (697)
T ss_pred HHHHcCCCceEEEEcCcc
Confidence 333 256777766643
No 170
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.51 E-value=0.00011 Score=86.93 Aligned_cols=181 Identities=12% Similarity=0.116 Sum_probs=105.5
Q ss_pred chhHHHHHHHHHHhh----cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCC-ceEEEecC-cchHHHHHHHHHHc--CC
Q 003450 287 HPYQLEGLNFLRFSW----SKQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-STLRNWEREFATWA--PQ 358 (819)
Q Consensus 287 ~~~Q~~~v~~l~~~~----~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~-~~LIv~P~-~ll~qW~~e~~~~~--p~ 358 (819)
+-+|-.|++.+.... ..|--++-...||.|||+.=.-++..|.....+ ++-|..-. +|.-|=-++++.-. .+
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~~ 489 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLSD 489 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCCc
Confidence 448988888775432 233446667899999999988888888777666 66666554 66677777776644 35
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCC---Ccc----ccc--------cccCCcc---------ccc-cccccccccEEEch
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPK---NPK----KVK--------KKKSGQV---------VSE-SKQDRIKFDVLLTS 413 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~---~~~----~~~--------~~~~~~~---------~~~-~~~~~~~~~vvi~t 413 (819)
-...+..|+...+......+-.... ... ... -...+.. ... .........|+|+|
T Consensus 490 ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~T 569 (1110)
T TIGR02562 490 DDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVCT 569 (1110)
T ss_pred cceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEec
Confidence 6778888998888766422111000 000 000 0000000 000 11112345688999
Q ss_pred hhHHhhcccccC---------CccceEEEecccccccCcccHHHHHHHhc------ccCcEEEEeCCCCCCC
Q 003450 414 YEMINLDSASLK---------PIKWQCMIVDEGHRLKNKDSKLFSSLKQY------STRHRVLLTGTPLQNN 470 (819)
Q Consensus 414 y~~l~~~~~~l~---------~~~~~~lIvDEaH~~kn~~s~~~~~l~~l------~~~~~llLTgTP~~n~ 470 (819)
.+.+......++ ..--..|||||+|-+ ......+|..+ -...+++||||--..-
T Consensus 570 IDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaY---D~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l 638 (1110)
T TIGR02562 570 IDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDY---EPEDLPALLRLVQLAGLLGSRVLLSSATLPPAL 638 (1110)
T ss_pred HHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccC---CHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHH
Confidence 888765443222 112358999999998 33333333332 3567899999964433
No 171
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=98.49 E-value=8.4e-08 Score=92.81 Aligned_cols=53 Identities=32% Similarity=0.877 Sum_probs=43.9
Q ss_pred hhhhcccccccccccccCC--CCeEecCC--CCc-cccccCcCCCCCCCCCCCcccCccCC
Q 003450 42 ERIVRIDAKDDSCQACGES--ENLMSCDT--CTY-AYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 42 ~~~~~~~~~~~~C~~c~~~--~~~~~C~~--C~~-~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
...+..+++..||. |++. |.|+-||. |.+ +||+.|+ +|..+|+|.|||++|+.
T Consensus 212 ss~d~se~e~lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CV--GLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 212 SSEDNSEGEELYCF-CQQVSYGQMVACDNANCKREWFHLECV--GLKEPPKGKWYCPECKK 269 (271)
T ss_pred CccccccCceeEEE-ecccccccceecCCCCCchhheecccc--ccCCCCCCcEeCHHhHh
Confidence 33344456778998 8876 78999995 975 5999999 99999999999999985
No 172
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.48 E-value=4.2e-08 Score=73.90 Aligned_cols=44 Identities=43% Similarity=1.192 Sum_probs=37.5
Q ss_pred ccccccC---CCCeEecCCCCccccccCcCCCCC--CCCCCCcccCccC
Q 003450 53 SCQACGE---SENLMSCDTCTYAYHAKCLVPPLK--APPSGSWRCPECV 96 (819)
Q Consensus 53 ~C~~c~~---~~~~~~C~~C~~~~H~~c~~p~~~--~~~~~~w~C~~c~ 96 (819)
+|.+|++ .+.+|.|+.|.+.||..|+.|+.. ..+.+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 5888887 455999999999999999999987 4456699999996
No 173
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.47 E-value=9.8e-07 Score=92.93 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=54.3
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH-hcCCC----CceEEEecC-cchHHHHHHHHHH
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL-FGERI----SPHLVVAPL-STLRNWEREFATW 355 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l-~~~~~----~~~LIv~P~-~ll~qW~~e~~~~ 355 (819)
.+.||.|.+-+..+...+..++.+|+-.+||+|||+.++..+... ...+. .++++++++ +++.+-..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 456999999999999999999999999999999999987766433 33332 278888886 4445555566554
No 174
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.47 E-value=9.8e-07 Score=92.93 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=54.3
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH-hcCCC----CceEEEecC-cchHHHHHHHHHH
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL-FGERI----SPHLVVAPL-STLRNWEREFATW 355 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l-~~~~~----~~~LIv~P~-~ll~qW~~e~~~~ 355 (819)
.+.||.|.+-+..+...+..++.+|+-.+||+|||+.++..+... ...+. .++++++++ +++.+-..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 456999999999999999999999999999999999987766433 33332 278888886 4445555566554
No 175
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.45 E-value=6.9e-08 Score=106.22 Aligned_cols=49 Identities=33% Similarity=0.878 Sum_probs=42.8
Q ss_pred cccccccccCCCC---eEecCCCCcc-ccccCcCCCCCCCCCCCcccCccCCC
Q 003450 50 KDDSCQACGESEN---LMSCDTCTYA-YHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 50 ~~~~C~~c~~~~~---~~~C~~C~~~-~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
...-|.+|...+. ||+||.|+.+ ||++||+|++..+|-+.|||++|...
T Consensus 214 E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL 266 (1134)
T KOG0825|consen 214 EEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL 266 (1134)
T ss_pred ccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhh
Confidence 3455888886654 9999999998 99999999999999999999999853
No 176
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.45 E-value=4.8e-06 Score=91.41 Aligned_cols=134 Identities=20% Similarity=0.239 Sum_probs=80.4
Q ss_pred ceEEEEecchhHHHHHHHHH----hhC-----CCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCccc
Q 003450 625 HRVLIYSQFQHMLDLLEDYL----TFK-----KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLAT 695 (819)
Q Consensus 625 ~kvlIFs~~~~~ld~L~~~L----~~~-----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~ 695 (819)
.-+|||-.-....+..++.| ... .+-++-++.+.+.+...++ |...+.+..-++++|+.+.+.|.+.+
T Consensus 474 GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdg 550 (902)
T KOG0923|consen 474 GDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDG 550 (902)
T ss_pred ccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecC
Confidence 35677765544443333333 222 2335667788888877665 55444444558999999999999998
Q ss_pred CCEEEEeCCCC--------------------CcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHH---HHhhhh
Q 003450 696 ADTVIIYDSDW--------------------NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT---KKKMVL 752 (819)
Q Consensus 696 a~~VI~~d~~w--------------------np~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~---~~K~~l 752 (819)
...|| ||.+ +.+.-.||.||++|.|..+ .|||++.-+++..+-..- -++..|
T Consensus 551 I~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGK---CfRLYt~~aY~~eLE~~t~PEIqRtnL 625 (902)
T KOG0923|consen 551 IKYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGK---CFRLYTAWAYEHELEEMTVPEIQRTNL 625 (902)
T ss_pred eEEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCc---eEEeechhhhhhhhccCCCcceeeccc
Confidence 88876 4432 2345568888888877654 788888655443322211 134455
Q ss_pred HHHHhchhhhccccc
Q 003450 753 EHLVVGRLKAQNINQ 767 (819)
Q Consensus 753 ~~~v~~~~~~~~~~~ 767 (819)
.+.|+ .+++-++++
T Consensus 626 ~nvVL-~LkSLGI~D 639 (902)
T KOG0923|consen 626 GNVVL-LLKSLGIHD 639 (902)
T ss_pred hhHHH-HHHhcCcch
Confidence 55554 334444443
No 177
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=98.42 E-value=8.9e-08 Score=73.52 Aligned_cols=49 Identities=41% Similarity=0.650 Sum_probs=41.5
Q ss_pred hhhhHhhhhcCC--cceeeEeeecccccccccccCCCCccccHHHHHHHHH
Q 003450 193 TVDRILACRGED--DEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (819)
Q Consensus 193 ~~eril~~~~~~--~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~ 241 (819)
.|++||+.|... +..+|||||+|++|.++|||+.+.+......+++|..
T Consensus 4 ~ve~Il~~r~~~~~~~~~y~VkW~g~~~~~~tWe~~~~l~~~~~~i~~~~~ 54 (55)
T cd00024 4 EVEKILDHRKKKDGGEYEYLVKWKGYSYSEDTWEPEENLEDCKELIDEFKK 54 (55)
T ss_pred eEeeeeeeeecCCCCcEEEEEEECCCCCccCccccHHHhCchHHHHHHHHh
Confidence 469999999766 7899999999999999999999887765667777753
No 178
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.42 E-value=7.6e-07 Score=90.90 Aligned_cols=93 Identities=18% Similarity=0.221 Sum_probs=75.0
Q ss_pred HHHHHhcCCCCCcEEEEeccccccccCCcccC--------CEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCC
Q 003450 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATA--------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (819)
Q Consensus 665 ~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a--------~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~ 736 (819)
...+.|+++... ++|-++||++||.|++- ..-|.++++|+....+|..||+||.||..+..+..+++.-
T Consensus 52 ~e~~~F~~g~k~---v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGEKD---VAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCCce---EEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 456789887543 45557999999999963 2446899999999999999999999999876655666667
Q ss_pred CHHHHHHHHHHHhhhhHHHHhchh
Q 003450 737 SIEERMMQMTKKKMVLEHLVVGRL 760 (819)
Q Consensus 737 TvEe~i~~~~~~K~~l~~~v~~~~ 760 (819)
..|.+....+.+|+.-..++..+.
T Consensus 129 ~gE~Rfas~va~rL~sLgAlt~gd 152 (278)
T PF13871_consen 129 PGERRFASTVARRLESLGALTRGD 152 (278)
T ss_pred HHHHHHHHHHHHHHhhccccccCc
Confidence 789999999999998888777443
No 179
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.35 E-value=3e-06 Score=91.06 Aligned_cols=117 Identities=16% Similarity=0.198 Sum_probs=93.0
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHh----hCCC----eEEEEeccCChHHHHHHHHHhcCCCCCc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKW----QYERIDGKVGGAERQIRIDRFNAKNSSR 677 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~----~~g~----~~~~l~G~~~~~~R~~~i~~F~~~~~~~ 677 (819)
.+.|+....+++.++...|-|+|-||..+...+.+....+ .-|- .+..+.|+...++|.++-...- .+.
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F---~G~ 583 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLF---GGK 583 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhh---CCe
Confidence 4667888888899999999999999999887666544332 1111 2345678888999988876653 234
Q ss_pred EEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCC
Q 003450 678 FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (819)
Q Consensus 678 ~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~ 725 (819)
..-+++|.|+..|||+...|.|+++..|.+..++.|..||++|-+...
T Consensus 584 L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~S 631 (1034)
T KOG4150|consen 584 LCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPS 631 (1034)
T ss_pred eeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCc
Confidence 557999999999999999999999999999999999999999976543
No 180
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.24 E-value=6.3e-06 Score=84.56 Aligned_cols=66 Identities=23% Similarity=0.292 Sum_probs=47.4
Q ss_pred CCchhHHHHHHHHHHhhcCCCc-eEEEcCCCCcHHHHHHHHHHHHh-------cCCCCceEEEecC-cchHHHHHHHHH
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTH-VILADEMGLGKTIQSIAFLASLF-------GERISPHLVVAPL-STLRNWEREFAT 354 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~-~iLade~GlGKT~~~i~~l~~l~-------~~~~~~~LIv~P~-~ll~qW~~e~~~ 354 (819)
+|.+.|.+++..+ ..... +++.++.|+|||.+..+++..+. ....+++||++|+ ..+.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~----~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSA----LSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHH----CTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHH----HcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4789999999755 45555 89999999999988888777773 3445699999995 666777777766
No 181
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=98.24 E-value=3.8e-07 Score=69.98 Aligned_cols=49 Identities=37% Similarity=0.630 Sum_probs=41.9
Q ss_pred hhhhHhhhh-cCCcceeeEeeecccccccccccCCCCccccHHHHHHHHH
Q 003450 193 TVDRILACR-GEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (819)
Q Consensus 193 ~~eril~~~-~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~ 241 (819)
.|+||++.+ ...+..+|||||+|+++.++||++.+++..+...+.+|..
T Consensus 3 ~v~~Il~~r~~~~~~~~ylVkW~g~~~~~~tW~~~~~l~~~~~~v~~~~~ 52 (55)
T smart00298 3 EVEKILDHRWKKKGELEYLVKWKGYSYSEDTWEPEENLLNCSKKLDNYKK 52 (55)
T ss_pred chheeeeeeecCCCcEEEEEEECCCCCccCceeeHHHHHHHHHHHHHHHH
Confidence 489999999 7778899999999999999999998877655677777765
No 182
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.15 E-value=0.00027 Score=80.61 Aligned_cols=135 Identities=19% Similarity=0.207 Sum_probs=84.3
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcC-CCCceEEEecCcch-HH-------HHHHH-HHHcCCCeEEEEecChhHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTL-RN-------WEREF-ATWAPQMNVVMYVGTSQARNII 374 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~-~~~~~LIv~P~~ll-~q-------W~~e~-~~~~p~~~v~~~~g~~~~r~~~ 374 (819)
-++=+-+|||+|||.+.+-.+.+|... +..+|+||||+..+ .- -.+.| ...+.+.+.-.|.-+... ..
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~--~~ 152 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDI--EK 152 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHH--HH
Confidence 355678999999999999999998654 45599999997444 11 12223 333333332222221111 00
Q ss_pred HHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc---ccccCC-------------cc-------ceE
Q 003450 375 REYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---SASLKP-------------IK-------WQC 431 (819)
Q Consensus 375 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~---~~~l~~-------------~~-------~~~ 431 (819)
..+ .....+.|++.+.+.+.++ ...+.+ .. -..
T Consensus 153 ~~~------------------------~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPI 208 (985)
T COG3587 153 FKF------------------------KSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPI 208 (985)
T ss_pred Hhh------------------------ccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCE
Confidence 000 0123566788877777655 221111 01 137
Q ss_pred EEecccccccCcccHHHHHHHhcccCcEEEEeCCC
Q 003450 432 MIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTP 466 (819)
Q Consensus 432 lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP 466 (819)
|||||-|++... .+.+.++..+.+...+=.+||-
T Consensus 209 vIvDEPh~f~~~-~k~~~~i~~l~pl~ilRfgATf 242 (985)
T COG3587 209 VIVDEPHRFLGD-DKTYGAIKQLNPLLILRFGATF 242 (985)
T ss_pred EEecChhhcccc-hHHHHHHHhhCceEEEEecccc
Confidence 999999999875 7889999999988888888884
No 184
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.11 E-value=1e-06 Score=86.06 Aligned_cols=46 Identities=28% Similarity=0.745 Sum_probs=40.2
Q ss_pred cccccccccCCC---CeEecCCCCccccccCcCCCCCCCCCCCcccC-ccCC
Q 003450 50 KDDSCQACGESE---NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCP-ECVS 97 (819)
Q Consensus 50 ~~~~C~~c~~~~---~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~-~c~~ 97 (819)
++..|.+|+++. ++++||.|+++||..|+ +|.++|.|.|.|. .|..
T Consensus 313 ~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CV--GL~~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 313 SCELCRICLGPVIESEHLFCDVCDRGPHTLCV--GLQDLPRGEWICDMRCRE 362 (381)
T ss_pred ccHhhhccCCcccchheeccccccCCCCcccc--ccccccCccchhhhHHHH
Confidence 567789998764 49999999999999999 9999999999998 4553
No 185
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.08 E-value=1.9e-06 Score=78.05 Aligned_cols=29 Identities=45% Similarity=1.039 Sum_probs=26.4
Q ss_pred cccccCcCCCCCCCCCCCcccCccCCCCc
Q 003450 72 AYHAKCLVPPLKAPPSGSWRCPECVSPLN 100 (819)
Q Consensus 72 ~~H~~c~~p~~~~~~~~~w~C~~c~~~~~ 100 (819)
+||+.||.|||..+|+|+|+||.|.....
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~ 29 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKS 29 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCC
Confidence 59999999999999999999999997543
No 186
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=98.04 E-value=6.3e-07 Score=68.64 Aligned_cols=53 Identities=32% Similarity=0.657 Sum_probs=37.0
Q ss_pred ccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHh
Q 003450 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHR 172 (819)
Q Consensus 101 ~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~ 172 (819)
.|++|++.|....... ..+|||||+|+++.+|||+|++.|... . ...++.|.+
T Consensus 2 ~Ve~Il~~r~~~~~~~-------------~~~ylVkW~g~~~~~~tWe~~~~l~~~---~---~~li~~f~~ 54 (55)
T PF00385_consen 2 EVERILDHRVVKGGNK-------------VYEYLVKWKGYPYSENTWEPEENLKNC---F---PELIEEFEK 54 (55)
T ss_dssp EEEEEEEEEEETTEES-------------EEEEEEEETTSSGGGEEEEEGGGCSSH---C---HHHHHHHHH
T ss_pred EEEEEEEEEEeCCCcc-------------cEEEEEEECCCCCCCCeEeeHHHHhHh---h---HHHHHHHhC
Confidence 3677888764322110 369999999999999999999988532 1 235777764
No 187
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=98.02 E-value=2.1e-06 Score=89.01 Aligned_cols=50 Identities=28% Similarity=0.725 Sum_probs=40.8
Q ss_pred cccccccccc-ccCCCCeEecCC--CC-ccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 47 IDAKDDSCQA-CGESENLMSCDT--CT-YAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 47 ~~~~~~~C~~-c~~~~~~~~C~~--C~-~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
+.++..+|.. |...|+|+-||. |+ .+||+.|+ +|...|.|.|||+.|...
T Consensus 215 d~~e~~yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CV--GL~~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 215 DPDEPTYCICNQVSYGKMIGCDNPGCPIEWFHFTCV--GLKTKPKGKWYCPRCKAE 268 (274)
T ss_pred CCCCCEEEEecccccccccccCCCCCCcceEEEecc--ccccCCCCcccchhhhhh
Confidence 3345566654 335688999997 99 99999999 999999999999999853
No 188
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.93 E-value=0.0001 Score=75.65 Aligned_cols=122 Identities=18% Similarity=0.111 Sum_probs=76.7
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcch----HHHHHHHHHHcCC
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL----RNWEREFATWAPQ 358 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll----~qW~~e~~~~~p~ 358 (819)
|..+++-|+-|+-.| ..|-|.-..||=|||+++...+ .+..-...++=||+.+..+ .+|...|-+++ +
T Consensus 75 g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l~a-~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~L-G 146 (266)
T PF07517_consen 75 GLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAALPA-ALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFL-G 146 (266)
T ss_dssp S----HHHHHHHHHH------HTTSEEEESTTSHHHHHHHHHH-HHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHT-T
T ss_pred CCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHHHHH-HHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHh-h
Confidence 456778888887544 3456999999999999874333 3333344578888887666 35888888888 8
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc---------ccccCCccc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---------SASLKPIKW 429 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~---------~~~l~~~~~ 429 (819)
+.+....+......... ....+|+-+|...+..+ .......++
T Consensus 147 lsv~~~~~~~~~~~r~~----------------------------~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~ 198 (266)
T PF07517_consen 147 LSVGIITSDMSSEERRE----------------------------AYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGF 198 (266)
T ss_dssp --EEEEETTTEHHHHHH----------------------------HHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSS
T ss_pred hccccCccccCHHHHHH----------------------------HHhCcccccccchhhHHHHHHHHhhccchhccCCC
Confidence 88888877655332111 24567888887766543 111123477
Q ss_pred eEEEecccccc
Q 003450 430 QCMIVDEGHRL 440 (819)
Q Consensus 430 ~~lIvDEaH~~ 440 (819)
+++||||++.+
T Consensus 199 ~~~ivDEvDs~ 209 (266)
T PF07517_consen 199 DFAIVDEVDSI 209 (266)
T ss_dssp SEEEECTHHHH
T ss_pred CEEEEeccceE
Confidence 89999999876
No 189
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=97.91 E-value=5.4e-06 Score=63.55 Aligned_cols=51 Identities=35% Similarity=0.686 Sum_probs=37.5
Q ss_pred ccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHh
Q 003450 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHR 172 (819)
Q Consensus 101 ~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~ 172 (819)
.+++|++.|.... ....+|||||+|+++.||+|+|++.|... ..+++.|.+
T Consensus 4 ~ve~Il~~r~~~~--------------~~~~~y~VkW~g~~~~~~tWe~~~~l~~~-------~~~i~~~~~ 54 (55)
T cd00024 4 EVEKILDHRKKKD--------------GGEYEYLVKWKGYSYSEDTWEPEENLEDC-------KELIDEFKK 54 (55)
T ss_pred eEeeeeeeeecCC--------------CCcEEEEEEECCCCCccCccccHHHhCch-------HHHHHHHHh
Confidence 4578888775331 12379999999999999999999998642 246667754
No 190
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=6.2e-05 Score=84.55 Aligned_cols=65 Identities=22% Similarity=0.352 Sum_probs=48.2
Q ss_pred HHhcCCCCCcEEEEeccccccccCCcccCCEEEE--------eCCC---------C-CcchHHHHhHhhhhcCCCCcEEE
Q 003450 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVII--------YDSD---------W-NPHADLQAMARAHRLGQTNKVMI 729 (819)
Q Consensus 668 ~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~--------~d~~---------w-np~~~~Qa~gR~~R~Gq~~~V~v 729 (819)
.-|...+.+....+++|+++.+.|.+++..+||- ||.- | +.+.-.||.|||+|+|..+ .
T Consensus 621 RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGH---c 697 (1172)
T KOG0926|consen 621 RVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGH---C 697 (1172)
T ss_pred hhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCc---e
Confidence 3466666666668999999999999999999873 4432 3 3445569999999988654 6
Q ss_pred EEEEeC
Q 003450 730 FRLITR 735 (819)
Q Consensus 730 ~~li~~ 735 (819)
|||++.
T Consensus 698 YRLYSS 703 (1172)
T KOG0926|consen 698 YRLYSS 703 (1172)
T ss_pred eehhhh
Confidence 777653
No 191
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.89 E-value=0.0001 Score=78.52 Aligned_cols=62 Identities=31% Similarity=0.393 Sum_probs=47.1
Q ss_pred EEEeccccccccCCcccCCEEEEeCCC------CC-----------cchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHH
Q 003450 679 CFLLSTRAGGLGINLATADTVIIYDSD------WN-----------PHADLQAMARAHRLGQTNKVMIFRLITRGSIEER 741 (819)
Q Consensus 679 v~L~st~a~~~GinL~~a~~VI~~d~~------wn-----------p~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~ 741 (819)
.+++||..+...+.+.+.-.|| ||. +| |..-.||..|++|.|.+++-..|+|+++..++-.
T Consensus 315 kvVvstniaetsltidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~e 392 (699)
T KOG0925|consen 315 KVVVSTNIAETSLTIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKE 392 (699)
T ss_pred eEEEEecchheeeeeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhc
Confidence 3789999999998888776665 443 33 4455688889999999999999999997655443
Q ss_pred H
Q 003450 742 M 742 (819)
Q Consensus 742 i 742 (819)
|
T Consensus 393 m 393 (699)
T KOG0925|consen 393 M 393 (699)
T ss_pred C
Confidence 3
No 192
>PRK10536 hypothetical protein; Provisional
Probab=97.81 E-value=0.00014 Score=73.50 Aligned_cols=150 Identities=15% Similarity=0.134 Sum_probs=84.4
Q ss_pred CchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHh-cCCCCceEEEecCcchHHHHHHHHHHcCCCeEEEE
Q 003450 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GERISPHLVVAPLSTLRNWEREFATWAPQMNVVMY 364 (819)
Q Consensus 286 L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~-~~~~~~~LIv~P~~ll~qW~~e~~~~~p~~~v~~~ 364 (819)
....|...+.++ ..+..+++.++.|+|||..++++..... .....+++|+=|.... .+...|.|+
T Consensus 60 ~n~~Q~~~l~al----~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~----ge~LGfLPG------ 125 (262)
T PRK10536 60 RNEAQAHYLKAI----ESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA----DEDLGFLPG------ 125 (262)
T ss_pred CCHHHHHHHHHH----hcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc----hhhhCcCCC------
Confidence 556888887776 4456888999999999999999888644 4333355555444322 344444442
Q ss_pred ecChhHHH------HHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccc
Q 003450 365 VGTSQARN------IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (819)
Q Consensus 365 ~g~~~~r~------~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH 438 (819)
+..++- ....++...... ...... ....-.|-|.+...++.. .++-++|||||||
T Consensus 126 --~~~eK~~p~~~pi~D~L~~~~~~~-----------~~~~~~-~~~~~~Iei~~l~ymRGr-----tl~~~~vIvDEaq 186 (262)
T PRK10536 126 --DIAEKFAPYFRPVYDVLVRRLGAS-----------FMQYCL-RPEIGKVEIAPFAYMRGR-----TFENAVVILDEAQ 186 (262)
T ss_pred --CHHHHHHHHHHHHHHHHHHHhChH-----------HHHHHH-HhccCcEEEecHHHhcCC-----cccCCEEEEechh
Confidence 221111 000000000000 000000 001123555555544321 2344789999999
Q ss_pred cccCcccHHHHHHHhcccCcEEEEeCCCCCCC
Q 003450 439 RLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNN 470 (819)
Q Consensus 439 ~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~ 470 (819)
++.- ......+..+....++.++|-|-|.+
T Consensus 187 n~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 187 NVTA--AQMKMFLTRLGENVTVIVNGDITQCD 216 (262)
T ss_pred cCCH--HHHHHHHhhcCCCCEEEEeCChhhcc
Confidence 9843 45556667778889999999997766
No 193
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.80 E-value=8.6e-06 Score=85.79 Aligned_cols=48 Identities=46% Similarity=1.041 Sum_probs=41.8
Q ss_pred ccccccccccCCCC---eEecCCCCccccccCcCCCCCCCCCC----CcccCccC
Q 003450 49 AKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSG----SWRCPECV 96 (819)
Q Consensus 49 ~~~~~C~~c~~~~~---~~~C~~C~~~~H~~c~~p~~~~~~~~----~w~C~~c~ 96 (819)
.-...|.+|.+..+ ++.||.|...||+.||.|||+..|.- .|.|.+|.
T Consensus 542 a~~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 542 AMNYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred ccceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence 44577999998765 89999999999999999999999864 39999994
No 194
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.73 E-value=0.00022 Score=70.19 Aligned_cols=154 Identities=20% Similarity=0.203 Sum_probs=69.9
Q ss_pred CchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEecCcchHHHHHHHHHHcCCCeEEEE
Q 003450 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNVVMY 364 (819)
Q Consensus 286 L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~-~~~~LIv~P~~ll~qW~~e~~~~~p~~~v~~~ 364 (819)
+.+.|..+++.|. ...-+++.++.|+|||+.|++....+...+ ..+++|+-|..-. .+++ -|.|+----.+
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~---~~~l-GflpG~~~eK~ 76 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA---GEDL-GFLPGDLEEKM 76 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T---T-----SS--------
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC---cccc-ccCCCCHHHHH
Confidence 5578999998773 667899999999999999999888776554 3477777776533 2222 12221100000
Q ss_pred ecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccccccCcc
Q 003450 365 VGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKD 444 (819)
Q Consensus 365 ~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~~kn~~ 444 (819)
..- ........+..+...... .-.....|-+.+...++. ..++..+|||||||++..
T Consensus 77 ~p~--~~p~~d~l~~~~~~~~~~--------------~~~~~~~Ie~~~~~~iRG-----rt~~~~~iIvDEaQN~t~-- 133 (205)
T PF02562_consen 77 EPY--LRPIYDALEELFGKEKLE--------------ELIQNGKIEIEPLAFIRG-----RTFDNAFIIVDEAQNLTP-- 133 (205)
T ss_dssp -TT--THHHHHHHTTTS-TTCHH--------------HHHHTTSEEEEEGGGGTT-------B-SEEEEE-SGGG--H--
T ss_pred HHH--HHHHHHHHHHHhChHhHH--------------HHhhcCeEEEEehhhhcC-----ccccceEEEEecccCCCH--
Confidence 000 001111111111000000 000122344444443332 224458999999999832
Q ss_pred cHHHHHHHhcccCcEEEEeCCCCCCC
Q 003450 445 SKLFSSLKQYSTRHRVLLTGTPLQNN 470 (819)
Q Consensus 445 s~~~~~l~~l~~~~~llLTgTP~~n~ 470 (819)
..+...+.++....++.++|-|.|.+
T Consensus 134 ~~~k~ilTR~g~~skii~~GD~~Q~D 159 (205)
T PF02562_consen 134 EELKMILTRIGEGSKIIITGDPSQID 159 (205)
T ss_dssp HHHHHHHTTB-TT-EEEEEE------
T ss_pred HHHHHHHcccCCCcEEEEecCceeec
Confidence 34455566777889999999997766
No 195
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.68 E-value=0.00013 Score=80.44 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=65.6
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEE
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~ 362 (819)
.+|..-|..||... .+..=.||.+++|+|||++..+++.++.+...+|+||++|. ..++|-...|.+- +++|+
T Consensus 409 pkLN~SQ~~AV~~V----L~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~t--gLKVv 482 (935)
T KOG1802|consen 409 PKLNASQSNAVKHV----LQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKT--GLKVV 482 (935)
T ss_pred hhhchHHHHHHHHH----HcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhc--CceEe
Confidence 36888999999876 56677899999999999999999999998888899999995 6668888888764 57777
Q ss_pred EEecCh
Q 003450 363 MYVGTS 368 (819)
Q Consensus 363 ~~~g~~ 368 (819)
-+....
T Consensus 483 Rl~aks 488 (935)
T KOG1802|consen 483 RLCAKS 488 (935)
T ss_pred eeehhh
Confidence 665443
No 196
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=97.44 E-value=0.00011 Score=74.72 Aligned_cols=50 Identities=32% Similarity=0.357 Sum_probs=43.4
Q ss_pred chhhhHhhhhcCCcceeeEeeecccccccccccCCCCccccHHHHHHHHHH
Q 003450 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (819)
Q Consensus 192 ~~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~~ 242 (819)
+.+|.||..|-..|..||||||+|..-.+.|||++++|-. .-+|..|...
T Consensus 11 fAaEsIlkkRirKGrvEYlVKWkGWs~kyNTWEPEENILD-pRLi~AFe~r 60 (369)
T KOG2748|consen 11 FAAESILKKRIRKGRVEYLVKWKGWSQKYNTWEPEENILD-PRLIAAFEQR 60 (369)
T ss_pred HHHHHHHHHHhhccceEEEEEecccccccCccCccccccC-HHHHHHHHhh
Confidence 6899999999999999999999999999999999998853 5567777653
No 197
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.42 E-value=6.5e-05 Score=82.77 Aligned_cols=49 Identities=35% Similarity=0.962 Sum_probs=43.4
Q ss_pred ccccccccccCCCC---eEecCCCCccccccCcCCCCCCCCCCCcccCccCC
Q 003450 49 AKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 49 ~~~~~C~~c~~~~~---~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
..+.+|..|+.+|+ ++.|+.|+-+||.+|..|+...+|.|.|+|+.|..
T Consensus 66 ~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~ 117 (694)
T KOG4443|consen 66 PSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTR 117 (694)
T ss_pred CCceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHh
Confidence 35677888887665 99999999999999999999999999999998863
No 198
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.40 E-value=0.0014 Score=65.05 Aligned_cols=58 Identities=22% Similarity=0.171 Sum_probs=39.7
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcch
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll 345 (819)
+|.+-|.+++..+.. ...+-.+|.+..|+|||.....+...+... ..++++++|++-.
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~-g~~v~~~apT~~A 58 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAEALEAA-GKRVIGLAPTNKA 58 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHHHHHHT-T--EEEEESSHHH
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHHHHHhC-CCeEEEECCcHHH
Confidence 478899999987732 233457788999999998766655555444 3699999998544
No 199
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.38 E-value=0.00097 Score=77.84 Aligned_cols=126 Identities=10% Similarity=-0.057 Sum_probs=88.4
Q ss_pred CCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCccccccc
Q 003450 313 MGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKK 391 (819)
Q Consensus 313 ~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~ 391 (819)
.|+|||-..+.++...+..+. .+||++|. +++.|+.+.|...+++..+.++|+........+.|.-
T Consensus 169 ~GSGKTevyl~~i~~~l~~Gk-~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~------------ 235 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAGR-GALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLA------------ 235 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcCC-eEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHH------------
Confidence 499999999999988877653 69999996 8889999999999976789999987776665555421
Q ss_pred cCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccccc--cCcccHH------HHHHHhcccCcEEEEe
Q 003450 392 KSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL--KNKDSKL------FSSLKQYSTRHRVLLT 463 (819)
Q Consensus 392 ~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~~--kn~~s~~------~~~l~~l~~~~~llLT 463 (819)
...+...|||.|...+-.-. -+..+|||||=|.- |...+-. ............++.|
T Consensus 236 ----------~~~G~~~IViGtRSAvFaP~-----~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgS 300 (665)
T PRK14873 236 ----------VLRGQARVVVGTRSAVFAPV-----EDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGG 300 (665)
T ss_pred ----------HhCCCCcEEEEcceeEEecc-----CCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEEC
Confidence 12346789999988763222 24579999999874 4322211 1111122345678889
Q ss_pred CCC
Q 003450 464 GTP 466 (819)
Q Consensus 464 gTP 466 (819)
+||
T Consensus 301 aTP 303 (665)
T PRK14873 301 HAR 303 (665)
T ss_pred CCC
Confidence 999
No 200
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=97.37 E-value=3.5e-05 Score=78.28 Aligned_cols=24 Identities=54% Similarity=0.960 Sum_probs=22.8
Q ss_pred hhhhhhccCCCcccccccChHHHH
Q 003450 131 KQYLVKWKGLSYLHCTWVPEKEFL 154 (819)
Q Consensus 131 ~eylVKw~~~s~~h~~W~~~~~l~ 154 (819)
.||||||+|+|..||||+|+++++
T Consensus 26 vEYlVKWkGWs~kyNTWEPEENIL 49 (369)
T KOG2748|consen 26 VEYLVKWKGWSQKYNTWEPEENIL 49 (369)
T ss_pred eEEEEEecccccccCccCcccccc
Confidence 799999999999999999999875
No 201
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=97.35 E-value=0.00012 Score=55.95 Aligned_cols=36 Identities=44% Similarity=0.956 Sum_probs=28.8
Q ss_pred hhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 003450 131 KQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (819)
Q Consensus 131 ~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~ 173 (819)
.+|||||+|.++.+|+|+|.++|... ...+.+|.++
T Consensus 18 ~~ylVkW~g~~~~~~tW~~~~~l~~~-------~~~v~~~~~~ 53 (55)
T smart00298 18 LEYLVKWKGYSYSEDTWEPEENLLNC-------SKKLDNYKKK 53 (55)
T ss_pred EEEEEEECCCCCccCceeeHHHHHHH-------HHHHHHHHHh
Confidence 68999999999999999999998631 2366677643
No 202
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.34 E-value=6.9e-05 Score=80.78 Aligned_cols=50 Identities=28% Similarity=0.664 Sum_probs=40.1
Q ss_pred cccccccCCC-----CeEecCCCCccccccCcCCCCCC----CCCCCcccCccCCCCcc
Q 003450 52 DSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKA----PPSGSWRCPECVSPLND 101 (819)
Q Consensus 52 ~~C~~c~~~~-----~~~~C~~C~~~~H~~c~~p~~~~----~~~~~w~C~~c~~~~~~ 101 (819)
..|.+|+.++ +||.|+.|...||..|+.|+... .|...|+|..|......
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~ 227 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKK 227 (464)
T ss_pred ceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhh
Confidence 3488887553 49999999999999999999754 46778999999875443
No 203
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=97.34 E-value=4.3e-05 Score=94.70 Aligned_cols=52 Identities=33% Similarity=0.903 Sum_probs=45.7
Q ss_pred cccccccccccCCC---CeEecCCCCccccccCcCCCCCCCCCCCcccCccCCCC
Q 003450 48 DAKDDSCQACGESE---NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (819)
Q Consensus 48 ~~~~~~C~~c~~~~---~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~ 99 (819)
......|.+|...+ +++.|+.|..+||+.|+.|.+..+|.|+|+||.|....
T Consensus 1105 s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred ccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 34567899998654 39999999999999999999999999999999999644
No 204
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.26 E-value=0.0011 Score=72.48 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=34.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhc-CCCCceEEEecCcchHHH-HHHHHH
Q 003450 307 VILADEMGLGKTIQSIAFLASLFG-ERISPHLVVAPLSTLRNW-EREFAT 354 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~-~~~~~~LIv~P~~ll~qW-~~e~~~ 354 (819)
.++.+..|+|||+.++.++..+.. ......++++++..+.+. ...+..
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhh
Confidence 678999999999999999998822 223477888887666554 334433
No 205
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.22 E-value=0.00022 Score=65.75 Aligned_cols=35 Identities=26% Similarity=0.528 Sum_probs=26.7
Q ss_pred eEEEecccccccCcccHHHHHHHhc--ccCcEEEEeCCC
Q 003450 430 QCMIVDEGHRLKNKDSKLFSSLKQY--STRHRVLLTGTP 466 (819)
Q Consensus 430 ~~lIvDEaH~~kn~~s~~~~~l~~l--~~~~~llLTgTP 466 (819)
.+|||||+|++. .......+..+ .....++|+|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999984 24555555555 566789999999
No 206
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=97.19 E-value=0.00039 Score=72.49 Aligned_cols=57 Identities=32% Similarity=0.407 Sum_probs=49.4
Q ss_pred CccchhhhHhhhhcCCcceeeEeeecccccccccccCCCCccccHHHHHHHHHHhhh
Q 003450 189 PEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQSR 245 (819)
Q Consensus 189 ~~~~~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~~~~~ 245 (819)
++...+|+|++.|...|..+|||||+|.+-.+.|||++.+...|.+.|+.|......
T Consensus 46 ~~~~vvEki~~~r~~~g~~eYlvkW~Gy~~~~ntWEPee~~~~C~~li~~~~~~~~~ 102 (270)
T KOG1911|consen 46 EEEYVVEKILKRRKKNGKIEYLVKWKGYPDPDNTWEPEEHNLDCPELIDEFEKSQKK 102 (270)
T ss_pred cchhhhhhhhhccccCCCceeeeecCCCCCccccCCchhhccccHHHHHHHHHHhcc
Confidence 345799999999988888999999999999999999998666778999999875443
No 207
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.11 E-value=0.0018 Score=75.89 Aligned_cols=75 Identities=23% Similarity=0.294 Sum_probs=55.9
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEE
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~ 362 (819)
..|.+.|..++... .......++.+++|+|||.+++.++..+...+. ++|+++|+ ..+.+....+... +.+++
T Consensus 156 ~~ln~~Q~~Av~~~---l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~-~VLv~a~sn~Avd~l~e~l~~~--~~~vv 229 (637)
T TIGR00376 156 PNLNESQKEAVSFA---LSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGL-RVLVTAPSNIAVDNLLERLALC--DQKIV 229 (637)
T ss_pred CCCCHHHHHHHHHH---hcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC-CEEEEcCcHHHHHHHHHHHHhC--CCcEE
Confidence 46899999999865 233467899999999999999998888776543 89999996 4556666666653 34444
Q ss_pred EE
Q 003450 363 MY 364 (819)
Q Consensus 363 ~~ 364 (819)
-+
T Consensus 230 Rl 231 (637)
T TIGR00376 230 RL 231 (637)
T ss_pred Ee
Confidence 33
No 208
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.08 E-value=0.00032 Score=83.60 Aligned_cols=50 Identities=30% Similarity=0.779 Sum_probs=42.3
Q ss_pred ccccccccccCCC-----CeEecCCCCccccccCcCCCCCCCCCCCcccCccCCCCc
Q 003450 49 AKDDSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLN 100 (819)
Q Consensus 49 ~~~~~C~~c~~~~-----~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~~ 100 (819)
..+..|.+|.++. .+|+||.|+.++|++|.. ...+|+|.|+|..|.-.+.
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~ 271 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQ 271 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCcC
Confidence 4567899999764 289999999999999995 6678999999999996553
No 209
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.06 E-value=0.00074 Score=74.60 Aligned_cols=64 Identities=22% Similarity=0.315 Sum_probs=50.1
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHH
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWERE 351 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e 351 (819)
..|-+-|..++.+.. ....-.++.+++|+|||.+..-++..+...+ +++||.+|+ ..+.|-.+.
T Consensus 184 ~~ln~SQk~Av~~~~---~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~-k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAI---NNKDLLIIHGPPGTGKTRTLVEIISQLVKQK-KRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred ccccHHHHHHHHHHh---ccCCceEeeCCCCCCceeeHHHHHHHHHHcC-CeEEEEcCchHHHHHHHHH
Confidence 468889999998762 2335678999999999999888888776655 699999996 556776664
No 210
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.03 E-value=0.00025 Score=74.97 Aligned_cols=61 Identities=30% Similarity=0.738 Sum_probs=47.7
Q ss_pred ccccccccccCCCC-----eEecCCCCccccccCcCCCCCCCCCCCcccCccCCCCcccccccccccccCc
Q 003450 49 AKDDSCQACGESEN-----LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTV 114 (819)
Q Consensus 49 ~~~~~C~~c~~~~~-----~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~~~~~~il~~r~~p~~ 114 (819)
.-++.|.+|.+... ++.||+|+-+.|..|. ++..+|+|.|+|..|.-.... |..+-+-|..
T Consensus 191 ~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CY--GI~f~peG~WlCrkCi~~~~~---i~~C~fCps~ 256 (669)
T COG5141 191 EFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCY--GIQFLPEGFWLCRKCIYGEYQ---IRCCSFCPSS 256 (669)
T ss_pred hhhhhhHhccccccCCcceEEEecCcchhhhhhcc--cceecCcchhhhhhhcccccc---eeEEEeccCC
Confidence 34678999986543 9999999999999999 888999999999999865444 4444444544
No 211
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.00 E-value=0.0015 Score=62.93 Aligned_cols=81 Identities=17% Similarity=0.182 Sum_probs=54.5
Q ss_pred hcCceEEEEecchhHHHHHHHHHhhCCC--eEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc--cccccCCccc--
Q 003450 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKW--QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR--AGGLGINLAT-- 695 (819)
Q Consensus 622 ~~g~kvlIFs~~~~~ld~L~~~L~~~g~--~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~--a~~~GinL~~-- 695 (819)
..+..+|||......++.+.+.+...+. .+..+.- +..++.++++.|..+... +|+++. ...+|||+++
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~---il~~v~~g~~~EGiD~~~~~ 81 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGA---ILLAVAGGSFSEGIDFPGDL 81 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSE---EEEEETTSCCGSSS--ECES
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCe---EEEEEecccEEEeecCCCch
Confidence 3467999999999999999999876532 1112221 356788999999885433 566666 8999999995
Q ss_pred CCEEEEeCCCCC
Q 003450 696 ADTVIIYDSDWN 707 (819)
Q Consensus 696 a~~VI~~d~~wn 707 (819)
+..||+.-.|+-
T Consensus 82 ~r~vii~glPfp 93 (167)
T PF13307_consen 82 LRAVIIVGLPFP 93 (167)
T ss_dssp EEEEEEES----
T ss_pred hheeeecCCCCC
Confidence 889999988863
No 212
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=96.92 E-value=0.00033 Score=77.97 Aligned_cols=48 Identities=27% Similarity=0.794 Sum_probs=42.5
Q ss_pred ccccccccccCC-----CCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 49 AKDDSCQACGES-----ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 49 ~~~~~C~~c~~~-----~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
+++.+|.+|+.+ .+|++||.|.-..|+.|. ++..+|+|.|.|..|.-.
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCy--GIle~p~gpWlCr~Calg 321 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACY--GILEVPEGPWLCRTCALG 321 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhh--ceeecCCCCeeehhcccc
Confidence 367889999976 249999999999999999 999999999999999853
No 213
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=96.91 E-value=0.0006 Score=79.27 Aligned_cols=47 Identities=36% Similarity=0.880 Sum_probs=44.7
Q ss_pred ccccccccCCCCeEecCCCCccccccCcCCCCCCCCCCCcccCccCC
Q 003450 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 51 ~~~C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
++.|.+|.+.|+++||..|++.||..|..||+.+.|...|.|-.|..
T Consensus 344 ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~ 390 (1414)
T KOG1473|consen 344 DDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNI 390 (1414)
T ss_pred cccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhh
Confidence 46799999999999999999999999999999999999999999984
No 214
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.87 E-value=0.0015 Score=70.42 Aligned_cols=77 Identities=17% Similarity=0.185 Sum_probs=54.1
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCC--CceEEEecC--cchHHHHHHHH
Q 003450 278 PEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI--SPHLVVAPL--STLRNWEREFA 353 (819)
Q Consensus 278 p~~~~~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~--~~~LIv~P~--~ll~qW~~e~~ 353 (819)
|-+.+-...+|-|.+-..-++..+..++.|+|-++.|+|||+.-++++.++.-..+ ..-||-|.. +-++.-..|++
T Consensus 9 ~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 9 LVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred eEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHH
Confidence 33444456889999888778888899999999999999999998888766543322 255777764 33344444544
Q ss_pred H
Q 003450 354 T 354 (819)
Q Consensus 354 ~ 354 (819)
+
T Consensus 89 ~ 89 (755)
T KOG1131|consen 89 R 89 (755)
T ss_pred H
Confidence 3
No 215
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.75 E-value=0.011 Score=70.46 Aligned_cols=64 Identities=22% Similarity=0.144 Sum_probs=48.8
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEecCcchHHHHH
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWER 350 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~-~~~~LIv~P~~ll~qW~~ 350 (819)
+..|.+-|.+++..+ ..++-.+|.+..|+|||.++-+++..+...+ ..++++++|+........
T Consensus 321 ~~~l~~~Q~~Ai~~~----~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 321 RKGLSEEQKQALDTA----IQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred CCCCCHHHHHHHHHH----HhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHH
Confidence 457999999999866 4566899999999999988877776665443 247888999876655433
No 216
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.62 E-value=0.00041 Score=47.22 Aligned_cols=34 Identities=35% Similarity=0.948 Sum_probs=19.8
Q ss_pred CCeEecCCCCccccccCcCCCCCCCCCC-CcccCccC
Q 003450 61 ENLMSCDTCTYAYHAKCLVPPLKAPPSG-SWRCPECV 96 (819)
Q Consensus 61 ~~~~~C~~C~~~~H~~c~~p~~~~~~~~-~w~C~~c~ 96 (819)
..|+.|+.|.-..|..|. ++...|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CY--Gv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCY--GVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHH--T-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhC--CcccCCCCCcEECCcCC
Confidence 358999999999999999 77777776 79999884
No 217
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.61 E-value=0.0096 Score=68.88 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC----CCceEEEecCcchH
Q 003450 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPLSTLR 346 (819)
Q Consensus 288 ~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~----~~~~LIv~P~~ll~ 346 (819)
+.|+.++... ..++-++|.+..|+|||.++..++..+.... ..++++++|+.-..
T Consensus 148 ~~Qk~A~~~a----l~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA 206 (586)
T TIGR01447 148 NWQKVAVALA----LKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAA 206 (586)
T ss_pred HHHHHHHHHH----hhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHH
Confidence 7999998765 4567899999999999999888777665322 13689999985443
No 218
>PLN03025 replication factor C subunit; Provisional
Probab=96.53 E-value=0.035 Score=59.71 Aligned_cols=42 Identities=24% Similarity=0.338 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhcCC--CceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 290 QLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~--~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
|.+.+..|......+ .+.++.++.|+|||..+.+++..+...
T Consensus 18 ~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~ 61 (319)
T PLN03025 18 NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 61 (319)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 344455554433332 468999999999999999998887543
No 219
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=96.50 E-value=0.0031 Score=74.81 Aligned_cols=110 Identities=24% Similarity=0.345 Sum_probs=77.8
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcch-----HHHHHHHHHHcCCCeEEEEecChhHHHHHH
Q 003450 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-----RNWEREFATWAPQMNVVMYVGTSQARNIIR 375 (819)
Q Consensus 301 ~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll-----~qW~~e~~~~~p~~~v~~~~g~~~~r~~~~ 375 (819)
+..+.+++++.+.|+|||+.|=.++. .....+++.-++|...+ ..|...|... .++.++...|.....-..
T Consensus 1156 y~~nd~v~vga~~gsgkt~~ae~a~l--~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~lkl- 1231 (1674)
T KOG0951|consen 1156 YNTNDNVLVGAPNGSGKTACAELALL--RPDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDLKL- 1231 (1674)
T ss_pred ecccceEEEecCCCCchhHHHHHHhc--CCccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccchHH-
Confidence 45678899999999999977643333 24445689999998666 4488888877 478888777765443211
Q ss_pred HhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccccccCccc
Q 003450 376 EYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDS 445 (819)
Q Consensus 376 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~~kn~~s 445 (819)
..+-+|+|.|++.+.... .. -..++.|+||.|.+.+...
T Consensus 1232 ----------------------------~~~~~vii~tpe~~d~lq-~i--Q~v~l~i~d~lh~igg~~g 1270 (1674)
T KOG0951|consen 1232 ----------------------------LQKGQVIISTPEQWDLLQ-SI--QQVDLFIVDELHLIGGVYG 1270 (1674)
T ss_pred ----------------------------hhhcceEEechhHHHHHh-hh--hhcceEeeehhhhhcccCC
Confidence 135689999999875442 22 2467899999999976443
No 220
>PRK04296 thymidine kinase; Provisional
Probab=96.44 E-value=0.0077 Score=59.41 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=26.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P 341 (819)
.++.++||+|||..++.++..+...+ .+++|+-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g-~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERG-MKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcC-CeEEEEec
Confidence 57899999999999998888775543 46777755
No 221
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.44 E-value=0.027 Score=52.32 Aligned_cols=40 Identities=25% Similarity=0.304 Sum_probs=27.4
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcc
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~l 344 (819)
+...++.+++|+|||..+-.++..+... ..+++++.....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~~ 58 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDL 58 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhhh
Confidence 6678999999999998777777666422 235555544433
No 222
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.40 E-value=0.012 Score=68.29 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=43.8
Q ss_pred CchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC---CCceEEEecCcchHH
Q 003450 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLRN 347 (819)
Q Consensus 286 L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~---~~~~LIv~P~~ll~q 347 (819)
.-+.|+.|+... ..++-++|.++.|+|||.++..++..+.+.. ..++++++|+.-...
T Consensus 153 ~~d~Qk~Av~~a----~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~ 213 (615)
T PRK10875 153 EVDWQKVAAAVA----LTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAA 213 (615)
T ss_pred CCHHHHHHHHHH----hcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHH
Confidence 458999998754 4567899999999999999888887765432 236888899755533
No 223
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=96.26 E-value=0.0017 Score=71.87 Aligned_cols=43 Identities=35% Similarity=0.937 Sum_probs=37.3
Q ss_pred ccccccCCC-----CeEecCC--CCccccccCcCCCCCCCCCCCcccCccCC
Q 003450 53 SCQACGESE-----NLMSCDT--CTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 53 ~C~~c~~~~-----~~~~C~~--C~~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
=|.||.+.- -|+.||+ |.-+.|..|+ .+..+|.|.|||..|-.
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCY--GIvqVPtGpWfCrKCes 56 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACY--GIVQVPTGPWFCRKCES 56 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcc--eeEecCCCchhhhhhhh
Confidence 388997642 2999995 9999999999 89999999999999975
No 224
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.21 E-value=0.0094 Score=59.31 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=61.9
Q ss_pred CCCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHc
Q 003450 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (819)
Q Consensus 282 ~~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~ 356 (819)
.+..+||-|.+.+..|... ..+.+.++..-||-|||-..+-++..++..+..=+-++||.+++.|-..-+..-+
T Consensus 20 ~~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKALLEQMRQMLRSRL 93 (229)
T ss_pred cCceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHHHHHHHHHHHHHH
Confidence 4567999999999888653 5678999999999999999888888888887777889999999988777765543
No 225
>PRK06526 transposase; Provisional
Probab=96.08 E-value=0.012 Score=60.56 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=33.9
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~ 353 (819)
..+.+.+|.+++|+|||..+.++...+...+. +++++. ..+|.+++.
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~-~v~f~t----~~~l~~~l~ 142 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGH-RVLFAT----AAQWVARLA 142 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCC-chhhhh----HHHHHHHHH
Confidence 56789999999999999999998887765543 444432 244555554
No 226
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.01 E-value=0.05 Score=60.56 Aligned_cols=43 Identities=21% Similarity=0.124 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 289 YQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 289 ~Q~~~v~~l~~~~~~~~---~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
.|..++..|......++ ..|+.++.|+|||..|..++..+...
T Consensus 22 GQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 22 HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 35555555555555544 35999999999999999998887543
No 227
>PRK08181 transposase; Validated
Probab=95.94 E-value=0.052 Score=56.36 Aligned_cols=54 Identities=17% Similarity=0.060 Sum_probs=39.3
Q ss_pred CchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 003450 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (819)
Q Consensus 286 L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~ 340 (819)
+..-|..++..+..+...+.+.+|.+++|+|||..+.++...+...+ .+++++.
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g-~~v~f~~ 141 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENG-WRVLFTR 141 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcC-Cceeeee
Confidence 55677777765533446788999999999999999998888776553 2444443
No 228
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.93 E-value=0.016 Score=60.44 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=21.6
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
.+.+|.+++|+|||..|-++...+..
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 46789999999999998888776644
No 229
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.91 E-value=0.04 Score=57.79 Aligned_cols=69 Identities=20% Similarity=0.182 Sum_probs=41.1
Q ss_pred cCCCCCCCCCCCch-hHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH-hcCC-CCceEEEecCcch
Q 003450 275 EHSPEFLSGGSLHP-YQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL-FGER-ISPHLVVAPLSTL 345 (819)
Q Consensus 275 ~~~p~~~~~~~L~~-~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l-~~~~-~~~~LIv~P~~ll 345 (819)
...+....|...|. +|.-|++.|.. ..-.=+.|.+.-|+|||+-|+|+..+. ...+ ..+++|.=|..-+
T Consensus 217 ~~~~~~vwGi~prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpv 288 (436)
T COG1875 217 KHEDQEVWGIRPRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPV 288 (436)
T ss_pred ccCchhhhccCcccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCc
Confidence 33444455554444 88888886621 223446789999999999988765543 2222 2355555554444
No 230
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.86 E-value=0.36 Score=54.75 Aligned_cols=81 Identities=12% Similarity=0.122 Sum_probs=49.4
Q ss_pred eEEEEecchhHHHHHHHHHhhCCCeEEEEeccCC-----hHHHHHHHHHhcCC---CCCcEEEEeccccccccCCccc--
Q 003450 626 RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVG-----GAERQIRIDRFNAK---NSSRFCFLLSTRAGGLGINLAT-- 695 (819)
Q Consensus 626 kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~-----~~~R~~~i~~F~~~---~~~~~v~L~st~a~~~GinL~~-- 695 (819)
=|++|...-..+..+.+.....|+- .++.|.-. ..--..+++.|... ..+.+.|-|--..+++|||+.+
T Consensus 631 GvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~L 709 (821)
T KOG1133|consen 631 GVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDDL 709 (821)
T ss_pred cEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCCeEEEEEecccccccccccccc
Confidence 4777777777788888887766542 12222100 01134556666421 1234445556667799999997
Q ss_pred CCEEEEeCCCCC
Q 003450 696 ADTVIIYDSDWN 707 (819)
Q Consensus 696 a~~VI~~d~~wn 707 (819)
+..|++.-.|+-
T Consensus 710 gRaVvvVGlPyP 721 (821)
T KOG1133|consen 710 GRAVVVVGLPYP 721 (821)
T ss_pred ccEEEEeecCCC
Confidence 889999888874
No 231
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.84 E-value=0.03 Score=51.55 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=32.0
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW 348 (819)
+...+|.+++|+|||..+..++..+.... ..++++.+......+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccC
Confidence 46789999999999999888877764443 356777776555443
No 232
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.74 E-value=0.0063 Score=67.06 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=32.5
Q ss_pred EcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHH
Q 003450 310 ADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRN 347 (819)
Q Consensus 310 ade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~q 347 (819)
-+.||+|||+++.++|.+++..+...+|+.|-. +++..
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilek 41 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEK 41 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHH
Confidence 468999999999999999999998899998884 55544
No 233
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.73 E-value=0.11 Score=60.45 Aligned_cols=42 Identities=24% Similarity=0.219 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~~---~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
|.+.+..|...+..++ ..||.++.|+|||..+..+...+...
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4455555555555443 45899999999999999999888643
No 234
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.69 E-value=0.067 Score=58.13 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=30.3
Q ss_pred HHHHHHHHhhcCCC--ceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 003450 292 EGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGER 332 (819)
Q Consensus 292 ~~v~~l~~~~~~~~--~~iLade~GlGKT~~~i~~l~~l~~~~ 332 (819)
+.+..+......+. ..++.++.|+|||..+.+++..+....
T Consensus 22 ~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~ 64 (337)
T PRK12402 22 EVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP 64 (337)
T ss_pred HHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 34445544445554 789999999999999999988876543
No 235
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.66 E-value=0.11 Score=56.17 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~~---~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
|.+++..|...+..++ ..++.++.|+|||..+..++..+...
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 5566677777776665 47889999999999999999988764
No 236
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.60 E-value=0.19 Score=49.37 Aligned_cols=28 Identities=25% Similarity=0.473 Sum_probs=23.8
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
+-.+.|+++++|.|||..+.+++..|+.
T Consensus 47 nmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 47 NMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred CCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 3458999999999999999888888754
No 237
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.55 E-value=0.13 Score=56.18 Aligned_cols=56 Identities=11% Similarity=0.169 Sum_probs=35.8
Q ss_pred cceEEEecccccccCccc---HHHHHHHhccc--CcEEEEeCCCCCCChhHHHhhhcccCC
Q 003450 428 KWQCMIVDEGHRLKNKDS---KLFSSLKQYST--RHRVLLTGTPLQNNLDELFMLMHFLDA 483 (819)
Q Consensus 428 ~~~~lIvDEaH~~kn~~s---~~~~~l~~l~~--~~~llLTgTP~~n~~~el~~ll~~l~~ 483 (819)
+.++||||++.+...... .+...+..... ...|.|+||--++.+.+++.-...+.+
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~ 314 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSY 314 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 578999999998854322 23333333332 356889999877777777766554443
No 238
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.51 E-value=0.078 Score=55.53 Aligned_cols=43 Identities=21% Similarity=0.369 Sum_probs=30.7
Q ss_pred chhHHHHHHHHHHhhcCCC-ceEEEcCCCCcHHHHHHHHHHHHh
Q 003450 287 HPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 287 ~~~Q~~~v~~l~~~~~~~~-~~iLade~GlGKT~~~i~~l~~l~ 329 (819)
.+.+..+++.+......+. ..+|.++.|+|||..+-.++..+.
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3455677777765555544 477999999999988877766553
No 239
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.49 E-value=0.16 Score=56.51 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=34.4
Q ss_pred cceEEEecccccccCcccH---HHHHHHhc--ccCcEEEEeCCCCCCChhHHHhhhcccCC
Q 003450 428 KWQCMIVDEGHRLKNKDSK---LFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (819)
Q Consensus 428 ~~~~lIvDEaH~~kn~~s~---~~~~l~~l--~~~~~llLTgTP~~n~~~el~~ll~~l~~ 483 (819)
.+++||||-+-+....... +...+... .....+.|++|+-.+.+.+++..+..+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 4789999998765432222 22222211 22456889999877777777776665554
No 240
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.42 E-value=0.12 Score=61.45 Aligned_cols=42 Identities=29% Similarity=0.319 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhcCC--Cce-EEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 290 QLEGLNFLRFSWSKQ--THV-ILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~--~~~-iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
|...+..|...+..+ .++ |+.++.|+|||..+..++..+...
T Consensus 21 Qe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 21 QSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 444444454444443 244 899999999999999999888653
No 241
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.41 E-value=0.12 Score=58.86 Aligned_cols=42 Identities=24% Similarity=0.200 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~---~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
|...+..|......+ +..|+.++.|+|||..|..++..+...
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 444555555544443 235899999999999999999888643
No 242
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.36 E-value=0.13 Score=55.19 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=36.5
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
.++|+|......+...-.-.+..++.++.|.|||..|.+++..+...
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 36889988887775552233456789999999999999999998754
No 243
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.14 E-value=0.053 Score=62.93 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=38.3
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHH----HHHHHHHHh
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ----SIAFLASLF 329 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~----~i~~l~~l~ 329 (819)
.++++-|+.-+..++..+....+++|-++||+|||+. ++|+..++.
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k 69 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLK 69 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhh
Confidence 5679999999999999999999999999999999987 444444443
No 244
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.13 E-value=0.17 Score=58.21 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=27.9
Q ss_pred HHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 292 EGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 292 ~~v~~l~~~~~~~---~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
..+..|...+..+ +..|+.++.|+|||..+..++..+..
T Consensus 23 ~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 23 HVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3334444444443 34589999999999999999998865
No 245
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.12 E-value=0.032 Score=58.80 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=23.5
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGER 332 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~ 332 (819)
+.+.+|.+++|+|||..|.++...+...+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g 86 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLG 86 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 34788999999999999988877776543
No 246
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.07 E-value=0.14 Score=56.34 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=23.0
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
+..|+.++.|+|||..|.+++..+...
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 347799999999999999999887654
No 247
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.01 E-value=0.16 Score=58.51 Aligned_cols=41 Identities=17% Similarity=0.108 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~---~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
|...+..|...+..+ +..|+.++.|+|||..|.+++..+..
T Consensus 20 Qe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 20 QNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 334444454444444 34589999999999999999888754
No 248
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.99 E-value=0.13 Score=52.21 Aligned_cols=40 Identities=28% Similarity=0.074 Sum_probs=27.7
Q ss_pred HHHHHHHHh--hcCCCceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 292 EGLNFLRFS--WSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 292 ~~v~~l~~~--~~~~~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
.++..|... ...+...+|.++.|+|||..+.++.......
T Consensus 24 ~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~ 65 (226)
T TIGR03420 24 ELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER 65 (226)
T ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 344444333 2345678899999999999998887776543
No 249
>CHL00181 cbbX CbbX; Provisional
Probab=94.97 E-value=0.04 Score=58.07 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=22.3
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
.+.+|.+++|+|||..|-++...+...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~ 86 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKL 86 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 357899999999999998888776544
No 250
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.93 E-value=0.3 Score=46.71 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 003450 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGERI 333 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~~---~~iLade~GlGKT~~~i~~l~~l~~~~~ 333 (819)
|.+.+..|...+..++ ..|+.++.|.||+..|.+++..++....
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~ 48 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNP 48 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 5566666666666553 4589999999999999999999876553
No 251
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.93 E-value=0.1 Score=53.67 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHhhcC--CCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 289 YQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 289 ~Q~~~v~~l~~~~~~--~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
+|-..|+-|...... ..+-++.++.|+|||-++++|..++..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 788888877655444 346789999999999999999999865
No 252
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.83 E-value=0.2 Score=56.94 Aligned_cols=43 Identities=16% Similarity=0.123 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 289 YQLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 289 ~Q~~~v~~l~~~~~~~---~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
-|...+..|...+..+ +..|+.++.|+|||.+|-.++..+...
T Consensus 25 Gq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 25 GQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 3555555565544554 368899999999999999999888643
No 253
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.83 E-value=0.24 Score=53.09 Aligned_cols=56 Identities=14% Similarity=0.031 Sum_probs=38.6
Q ss_pred CCCchhHHHHHHHHHH----hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 003450 284 GSLHPYQLEGLNFLRF----SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~----~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~ 340 (819)
+..+.++..++..+.. .-..+.+.+|.+++|+|||..+.+++..+...+. .++.+.
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~-~V~y~t 218 (329)
T PRK06835 159 LSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGK-SVIYRT 218 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCC-eEEEEE
Confidence 4566777677664432 2224578999999999999999999888876542 444433
No 254
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.82 E-value=0.21 Score=54.10 Aligned_cols=45 Identities=18% Similarity=0.249 Sum_probs=30.3
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec-Cc---chHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LS---TLRNWER 350 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P-~~---ll~qW~~ 350 (819)
+...|.+++|+|||.++..++..+...+. ++.++.- +. .+.||..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~Gk-kVglI~aDt~RiaAvEQLk~ 290 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKK-TVGFITTDHSRIGTVQQLQD 290 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHH
Confidence 45679999999999998888877765443 4554444 32 4455553
No 255
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.81 E-value=0.2 Score=58.33 Aligned_cols=42 Identities=24% Similarity=0.202 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~~--~-~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
|...+..|...+..++ + .|+.++.|+|||..+..++..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 4455555555555543 3 4899999999999999998888653
No 256
>PF13245 AAA_19: Part of AAA domain
Probab=94.74 E-value=0.079 Score=43.33 Aligned_cols=49 Identities=22% Similarity=0.257 Sum_probs=35.0
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcC---CCCceEEEecCcch-HHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGE---RISPHLVVAPLSTL-RNWEREF 352 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~---~~~~~LIv~P~~ll-~qW~~e~ 352 (819)
++-+++.++.|+|||.+++..+.++... ..+++||++|+... .+-.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4446679999999999988888888632 24589999997444 3333333
No 257
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=94.69 E-value=0.011 Score=73.30 Aligned_cols=179 Identities=26% Similarity=0.408 Sum_probs=95.2
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCc--HHHHHHHHHHHHhcC-CCCceEEEecCcchHHHHHHHHHHcCCCeE
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLG--KTIQSIAFLASLFGE-RISPHLVVAPLSTLRNWEREFATWAPQMNV 361 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlG--KT~~~i~~l~~l~~~-~~~~~LIv~P~~ll~qW~~e~~~~~p~~~v 361 (819)
.+.++|.....-... ....+..+++..|.| ||+.+..+....... ...+.++++|..+..+|..+...++ ....
T Consensus 84 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~~ 160 (866)
T COG0553 84 ILIPHQLDIALEVLN--ELALRVLIADEVGLGDLKTIEAGAILKELLLRGEIKRVLILVPKTLRAQWVVELLEKF-NIRL 160 (866)
T ss_pred ccCcchhhhhhhhhh--hhhhchhhcccccccccccccccccchHhhhhhhhccceeccchHHHHHHHHHhhhhc-cccc
Confidence 455666665432211 222337889999999 898877666555433 3348899999988899999887653 2111
Q ss_pred EEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc----ccccCCccc---eEEEe
Q 003450 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKW---QCMIV 434 (819)
Q Consensus 362 ~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~----~~~l~~~~~---~~lIv 434 (819)
....-... +......... . .......++.+.+..... ...+....| +++++
T Consensus 161 ~~~~~~~~-~~~~~~~~~~---~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (866)
T COG0553 161 AVLDKEGL-RYLLKQYDAY---N------------------PFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVI 218 (866)
T ss_pred hhhhhhhh-hhhhhhhccc---c------------------cccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhc
Confidence 11111100 0000000000 0 000000023333333221 222333345 89999
Q ss_pred cccccccCcc---------cHHHHHHHhcc--cC------cEEEEeCCCCCCChhHHHhhhcccCCCCCCC
Q 003450 435 DEGHRLKNKD---------SKLFSSLKQYS--TR------HRVLLTGTPLQNNLDELFMLMHFLDAGKFGS 488 (819)
Q Consensus 435 DEaH~~kn~~---------s~~~~~l~~l~--~~------~~llLTgTP~~n~~~el~~ll~~l~~~~~~~ 488 (819)
||+|...... ...+..+.... .. ....+++||......+++....++++..+.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 219 DEAHNLGSSEGTRKLAPLETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred chHhhcccccccccccchhhhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 9999987642 22333333221 11 2347899999888888877667776665554
No 258
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.63 E-value=0.23 Score=50.83 Aligned_cols=28 Identities=21% Similarity=0.106 Sum_probs=22.1
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
.+...+|.++.|+|||..+.++...+..
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3457899999999999888777766544
No 259
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.62 E-value=0.19 Score=46.66 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=35.1
Q ss_pred CChHHHHHHHHHhcCCCCCcEEEEeccccccccCCccc--CCEEEEeCCCC
Q 003450 658 VGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLAT--ADTVIIYDSDW 706 (819)
Q Consensus 658 ~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~--a~~VI~~d~~w 706 (819)
....+..++++.|.....+ .+|+++....+|||++. +..||+.-.|+
T Consensus 31 ~~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 31 EDGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 3444678899999865432 35777777999999996 68899988665
No 260
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.55 E-value=0.31 Score=53.46 Aligned_cols=42 Identities=24% Similarity=0.140 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHhhcCCC--c-eEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 289 YQLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 289 ~Q~~~v~~l~~~~~~~~--~-~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
-|...+..+...+..++ + .++.++.|+|||..|-+++..+..
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 35556666655555543 3 489999999999999999888753
No 261
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.44 E-value=0.17 Score=47.03 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCCC--CcEEEEeccc--cccccCCccc--CCEEEEeCCCC
Q 003450 661 AERQIRIDRFNAKNS--SRFCFLLSTR--AGGLGINLAT--ADTVIIYDSDW 706 (819)
Q Consensus 661 ~~R~~~i~~F~~~~~--~~~v~L~st~--a~~~GinL~~--a~~VI~~d~~w 706 (819)
.+..++++.|+.... +. +|+++. ..+||||+++ +..||+.-.|+
T Consensus 31 ~~~~~~l~~f~~~~~~~g~--iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 31 GETEELLEKYSAACEARGA--LLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred chHHHHHHHHHHhcCCCCE--EEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 355788999986433 22 444444 4899999996 78899988775
No 262
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.42 E-value=0.3 Score=55.94 Aligned_cols=41 Identities=24% Similarity=0.237 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~~---~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
|..++..|...+..++ ..|+.++.|+|||..|..++..+..
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3344444544444443 3679999999999999999988864
No 263
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.41 E-value=0.41 Score=55.35 Aligned_cols=41 Identities=22% Similarity=0.139 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~~--~-~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
|...+..|...+..++ + .|+.++.|+|||..|.+++..+..
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5566666655555543 3 489999999999999999988864
No 264
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.41 E-value=0.58 Score=50.28 Aligned_cols=42 Identities=31% Similarity=0.444 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCC--CceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 290 QLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~--~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
|.+++..+......+ .+.+|.++.|+|||..+-+++..+...
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~ 65 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGE 65 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 334555554444433 358999999999999998888777543
No 265
>PRK08116 hypothetical protein; Validated
Probab=94.40 E-value=0.27 Score=51.33 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=32.0
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW 348 (819)
+.+.+|.+++|+|||..+.+++..+...+ .+++++.-..++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~-~~v~~~~~~~ll~~i 157 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG-VPVIFVNFPQLLNRI 157 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEEHHHHHHHH
Confidence 45689999999999999999999887653 466555433444333
No 266
>PRK08727 hypothetical protein; Validated
Probab=94.34 E-value=0.21 Score=51.06 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=22.4
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGER 332 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~ 332 (819)
...+|.+++|+|||..+.++...+...+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~ 69 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAG 69 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3478999999999988888877765543
No 267
>PF13173 AAA_14: AAA domain
Probab=94.33 E-value=0.3 Score=44.64 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=21.5
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHh
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~ 329 (819)
++-.+|.++.|+|||..+..++..+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 45678999999999998888777664
No 268
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.31 E-value=0.31 Score=58.51 Aligned_cols=60 Identities=13% Similarity=0.004 Sum_probs=44.3
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchH
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~ 346 (819)
+..|.+-|.+++..+. ..++-++|.+..|+|||.+.-+++..+... ..++++++|+....
T Consensus 350 ~~~Ls~~Q~~Av~~i~---~s~~~~il~G~aGTGKTtll~~i~~~~~~~-g~~V~~~ApTg~Aa 409 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVT---GSGDIAVVVGRAGTGKSTMLKAAREAWEAA-GYRVIGAALSGKAA 409 (744)
T ss_pred cCCCCHHHHHHHHHHh---cCCCEEEEEecCCCCHHHHHHHHHHHHHhC-CCeEEEEeCcHHHH
Confidence 3579999999998763 224568999999999998876665554433 34788899986553
No 269
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.30 E-value=0.48 Score=53.49 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 291 LEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 291 ~~~v~~l~~~~~~~---~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
...+..|...+..+ +..|+.++.|+|||..|..++..+...
T Consensus 19 e~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 19 DVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 34444454444444 467899999999999998888877543
No 270
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=94.24 E-value=0.02 Score=65.96 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=63.0
Q ss_pred cccccccccCCCCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCCCcccccccccccccCcCCCCCcccccccchh
Q 003450 50 KDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGSKQIF 129 (819)
Q Consensus 50 ~~~~C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~~~~~~il~~r~~p~~~~~~~~~~~~~~~~~ 129 (819)
...-|.+|...+++.+|+.|.+.||.+|+.|++..++..-|.|..|..
T Consensus 176 ~~~~~~~~~~~~k~~~~a~~~~r~~~~~iKpe~~~i~rii~~~~s~~~-------------------------------- 223 (696)
T KOG0383|consen 176 PEAEIGVTRDKGKLVPYADLEERFLLYGIKPEWMPIARIINRRSSQKG-------------------------------- 223 (696)
T ss_pred ccccccccccCccccccccchhhhhheeccccccccchhhhhhccccc--------------------------------
Confidence 345577899999999999999999999999999999899999998863
Q ss_pred hhhhhhhccCCCcccccccChHH
Q 003450 130 VKQYLVKWKGLSYLHCTWVPEKE 152 (819)
Q Consensus 130 ~~eylVKw~~~s~~h~~W~~~~~ 152 (819)
...|+|||+..+|.+++|..+..
T Consensus 224 ~~~~~Vk~k~l~~d~~~~e~~~~ 246 (696)
T KOG0383|consen 224 ATDYLVKWKELSYDEQEWEVEDP 246 (696)
T ss_pred ceeeEeeeccCCccccCCCcCCC
Confidence 26899999999999999999874
No 271
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.17 E-value=0.43 Score=55.46 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~~---~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
|-..+..|...+..++ ..||.++.|+|||..|..++..+...
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 4455555555555543 57899999999999999999988654
No 272
>PRK14974 cell division protein FtsY; Provisional
Probab=94.16 E-value=0.25 Score=53.03 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=30.8
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC----cchHHHHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL----STLRNWEREFA 353 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~----~ll~qW~~e~~ 353 (819)
.-.++.+++|+|||.++..++..+...+ .+++++... ....||..-..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g-~~V~li~~Dt~R~~a~eqL~~~a~ 192 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNG-FSVVIAAGDTFRAGAIEQLEEHAE 192 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcC-CeEEEecCCcCcHHHHHHHHHHHH
Confidence 3466899999999998877777665544 355555442 23356654443
No 273
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.16 E-value=0.11 Score=51.43 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=24.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P 341 (819)
.++.+++|.|||.++.=++.++... ..++.+|+-
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~ 37 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK-GKKVALISA 37 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc-cccceeecC
Confidence 5689999999999988888777666 345555554
No 274
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.13 E-value=0.073 Score=61.49 Aligned_cols=168 Identities=15% Similarity=0.211 Sum_probs=99.0
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHH-HHHHHcCCCeE
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWER-EFATWAPQMNV 361 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~-e~~~~~p~~~v 361 (819)
....|||.+-++.+-. ..-..+.+....-+|||.+++.++.+.....+.|+|+|.|+ .....|.. .|....-
T Consensus 15 ~~~~Py~~eimd~~~~--~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~---- 88 (557)
T PF05876_consen 15 TDRTPYLREIMDALSD--PSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIR---- 88 (557)
T ss_pred CCCChhHHHHHHhcCC--cCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHH----
Confidence 4688999998886621 12457888889999999999999988888888999999997 56666754 4444331
Q ss_pred EEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEeccccccc
Q 003450 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLK 441 (819)
Q Consensus 362 ~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~~k 441 (819)
.+...+..+.... .+...+.+.. .....-.+.++...+ ...|.+...++|++||...+-
T Consensus 89 ----~sp~l~~~~~~~~-----------~~~~~~t~~~--k~f~gg~l~~~ga~S----~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 89 ----ASPVLRRKLSPSK-----------SRDSGNTILY--KRFPGGFLYLVGANS----PSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred ----hCHHHHHHhCchh-----------hcccCCchhh--eecCCCEEEEEeCCC----CcccccCCcCEEEEechhhcc
Confidence 1111111111100 0000000000 000111233333222 356777888999999999982
Q ss_pred ----CcccHHHHHH---HhcccCcEEEEeCCCCCCChhHHHhhh
Q 003450 442 ----NKDSKLFSSL---KQYSTRHRVLLTGTPLQNNLDELFMLM 478 (819)
Q Consensus 442 ----n~~s~~~~~l---~~l~~~~~llLTgTP~~n~~~el~~ll 478 (819)
+.+.....+. ..+....++++..||.......+..+.
T Consensus 148 ~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~~ 191 (557)
T PF05876_consen 148 DDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERLY 191 (557)
T ss_pred ccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHHH
Confidence 2333333333 334467889999999877544544443
No 275
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.08 E-value=0.31 Score=59.58 Aligned_cols=60 Identities=13% Similarity=-0.012 Sum_probs=42.3
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchH
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~ 346 (819)
+..|.+-|.+++..+. ..+.-++|.+..|+|||.+.-+ +..+.......++.++|+....
T Consensus 344 g~~Ls~eQr~Av~~il---~s~~v~vv~G~AGTGKTT~l~~-~~~~~e~~G~~V~~~ApTGkAA 403 (988)
T PRK13889 344 GLVLSGEQADALAHVT---DGRDLGVVVGYAGTGKSAMLGV-AREAWEAAGYEVRGAALSGIAA 403 (988)
T ss_pred CCCCCHHHHHHHHHHh---cCCCeEEEEeCCCCCHHHHHHH-HHHHHHHcCCeEEEecCcHHHH
Confidence 4679999999998763 2234678999999999987443 4444333334788889976543
No 276
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.05 E-value=0.61 Score=49.75 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=40.1
Q ss_pred CCchhHHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~---~~iLade~GlGKT~~~i~~l~~l~~~~ 332 (819)
.++|+|......+...+..++ ..++.++.|+||+..|.+++..+....
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 488999999988877766554 467899999999999999999987654
No 277
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.00 E-value=0.4 Score=54.66 Aligned_cols=42 Identities=21% Similarity=0.208 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~~---~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
|...+..|......++ ..|+.++.|+|||..+.+++..+...
T Consensus 19 qe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 4444555545444443 23899999999999999999888643
No 278
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.99 E-value=0.38 Score=54.36 Aligned_cols=38 Identities=24% Similarity=0.161 Sum_probs=26.8
Q ss_pred HHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 293 GLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 293 ~v~~l~~~~~~~---~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
.+..|......+ +..|+.++.|+|||..|-+++..+..
T Consensus 22 i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 22 VKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 344444444443 33589999999999999988888754
No 279
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.87 E-value=0.46 Score=54.20 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhcCCC--ce-EEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 290 QLEGLNFLRFSWSKQT--HV-ILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~~--~~-iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
|..++..|......++ .. |+.++.|+|||..+.+++..+...
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4555665655545443 33 899999999999999998888643
No 280
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.87 E-value=0.33 Score=53.87 Aligned_cols=42 Identities=19% Similarity=0.131 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~---~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
|...+..|...+..+ +..|+.++.|+|||..|.+++..+...
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 445555565555554 346789999999999999999888653
No 281
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.86 E-value=0.27 Score=54.05 Aligned_cols=44 Identities=20% Similarity=0.154 Sum_probs=31.9
Q ss_pred CchhHHHHHHHHHHhhc---CCCceEEEcCCCCcHHHHHHHHHHHHh
Q 003450 286 LHPYQLEGLNFLRFSWS---KQTHVILADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 286 L~~~Q~~~v~~l~~~~~---~~~~~iLade~GlGKT~~~i~~l~~l~ 329 (819)
=|+.|++.+........ ...+.+|.++.|+|||.++-.++..+.
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 37778877654433322 235789999999999999888887764
No 282
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.76 E-value=0.5 Score=54.96 Aligned_cols=42 Identities=26% Similarity=0.265 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~~--~-~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
|...+..|...+..++ . .|+.++.|+|||..+..++..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5556666655555543 3 4899999999999999999888653
No 283
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.69 E-value=0.45 Score=51.37 Aligned_cols=43 Identities=26% Similarity=0.303 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhhcCCC--c-eEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 289 YQLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 289 ~Q~~~v~~l~~~~~~~~--~-~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
.|...+..+...+..++ + .|+.++.|.|||..|.+++..+...
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~ 55 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCL 55 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 46666666666665543 4 4899999999999999999988654
No 284
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.56 E-value=0.6 Score=50.96 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 003450 289 YQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (819)
Q Consensus 289 ~Q~~~v~~l~~~~~~~~---~~iLade~GlGKT~~~i~~l~~l~~~~ 332 (819)
-|.++...|...+..++ ..|+.++.|+|||..|.+++..++...
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 35666666666666553 577999999999999999999997643
No 285
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=93.55 E-value=0.26 Score=57.96 Aligned_cols=160 Identities=15% Similarity=0.164 Sum_probs=88.9
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEEE
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVM 363 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~~ 363 (819)
.|..-|++|+-.. .....-.++-+-+|+|||.+...++..|...+ +.+|+.+=+ +.+.|---.+..+. +. .+
T Consensus 669 ~LN~dQr~A~~k~---L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~g-kkVLLtsyThsAVDNILiKL~~~~--i~-~l 741 (1100)
T KOG1805|consen 669 RLNNDQRQALLKA---LAAEDYALILGMPGTGKTTTISLLIKILVALG-KKVLLTSYTHSAVDNILIKLKGFG--IY-IL 741 (1100)
T ss_pred hcCHHHHHHHHHH---HhccchheeecCCCCCchhhHHHHHHHHHHcC-CeEEEEehhhHHHHHHHHHHhccC--cc-ee
Confidence 5888999997643 34455567777899999988888888776655 467777764 67778776666543 22 22
Q ss_pred EecChhH-HHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccccccC
Q 003450 364 YVGTSQA-RNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (819)
Q Consensus 364 ~~g~~~~-r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~~kn 442 (819)
-.|.... -..++++...-..+-.. ...-........||.+|---+. ...|...+||++|||||-.+--
T Consensus 742 RLG~~~kih~~v~e~~~~~~~s~ks---------~~~l~~~~~~~~IVa~TClgi~--~plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 742 RLGSEEKIHPDVEEFTLTNETSEKS---------YADLKKFLDQTSIVACTCLGIN--HPLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred ecCCccccchHHHHHhcccccchhh---------HHHHHHHhCCCcEEEEEccCCC--chhhhccccCEEEEcccccccc
Confidence 2343322 22333332100000000 0000011123456666543332 3445566799999999976522
Q ss_pred cccHHHHHHHhcccCcEEEEeCCCC
Q 003450 443 KDSKLFSSLKQYSTRHRVLLTGTPL 467 (819)
Q Consensus 443 ~~s~~~~~l~~l~~~~~llLTgTP~ 467 (819)
+ -.+.-+....+..|-|-+.
T Consensus 811 P-----~~LgPL~~s~kFVLVGDh~ 830 (1100)
T KOG1805|consen 811 P-----LCLGPLSFSNKFVLVGDHY 830 (1100)
T ss_pred c-----hhhhhhhhcceEEEecccc
Confidence 1 2233344556666777653
No 286
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.52 E-value=0.63 Score=50.00 Aligned_cols=41 Identities=27% Similarity=0.315 Sum_probs=25.3
Q ss_pred cceEEEecccccccCcc--cHHHHHHHhcccCcEEEEeCCCCC
Q 003450 428 KWQCMIVDEGHRLKNKD--SKLFSSLKQYSTRHRVLLTGTPLQ 468 (819)
Q Consensus 428 ~~~~lIvDEaH~~kn~~--s~~~~~l~~l~~~~~llLTgTP~~ 468 (819)
..++|||||+|++.... ..+...+.......++++|++...
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 35689999999983222 223333444456677888876543
No 287
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.45 E-value=0.7 Score=49.38 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=37.4
Q ss_pred CchhHHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 003450 286 LHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (819)
Q Consensus 286 L~~~Q~~~v~~l~~~~~~~~---~~iLade~GlGKT~~~i~~l~~l~~~~ 332 (819)
++|+|...-..+...+..++ ..++.++.|.||+..|.+++..+....
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 57888887777777666643 456899999999999999999987643
No 288
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.36 E-value=0.77 Score=49.94 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=29.3
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcC-CCCceEEEecC
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPL 342 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~-~~~~~LIv~P~ 342 (819)
..++..+|.+++|+|||.++..++..+... +..++.+|+..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D 176 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTD 176 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence 456678899999999999988888765432 33456655543
No 289
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.33 E-value=0.28 Score=55.60 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=28.1
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCC-ceEEEecCcch
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTL 345 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~-~~LIv~P~~ll 345 (819)
...+|.+++|+|||..+-++...+.....+ .++.+.....+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~ 190 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT 190 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 357899999999999988888877655433 44444333333
No 290
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.31 E-value=0.25 Score=51.08 Aligned_cols=66 Identities=23% Similarity=0.248 Sum_probs=49.0
Q ss_pred chhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHH
Q 003450 287 HPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (819)
Q Consensus 287 ~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~ 353 (819)
.-.++..+.-+..++..+.+.+|.+++|+|||..++|+...+. ....+++++.-+.++.+.+..+.
T Consensus 88 ~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 88 DKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred hHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEEHHHHHHHHHHHHh
Confidence 3355555554555667888999999999999999999999998 43347777776677766666554
No 291
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=93.19 E-value=1.2 Score=49.33 Aligned_cols=133 Identities=14% Similarity=0.167 Sum_probs=94.4
Q ss_pred hHHHHH-HHHHHHH--hcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 609 KLQLLD-KMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 609 Kl~~l~-~ll~~l~--~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
+++... .+|+.+. ....++|||...---.-.|..+|...++.++.++-.++..+-..+-..|..+... ++|++-+
T Consensus 282 Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~--iLL~TER 359 (442)
T PF06862_consen 282 RFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKP--ILLYTER 359 (442)
T ss_pred HHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCce--EEEEEhH
Confidence 444444 4777776 2346899998876666778999999999999999999999999999999876543 3555555
Q ss_pred cc-cccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCC----CCcEEEEEEEeCCCHHHHHHHH
Q 003450 686 AG-GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQ----TNKVMIFRLITRGSIEERMMQM 745 (819)
Q Consensus 686 a~-~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq----~~~V~v~~li~~~TvEe~i~~~ 745 (819)
+- =.=..+.++.+||+|.+|-+|.-|.....-...-.+ .....|.-|.++ +|..-+++
T Consensus 360 ~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk--~D~~~LEr 422 (442)
T PF06862_consen 360 FHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK--YDALRLER 422 (442)
T ss_pred HhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH--hHHHHHHH
Confidence 42 234567789999999999999999888865554433 233455555544 34433333
No 292
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.18 E-value=0.57 Score=54.63 Aligned_cols=42 Identities=24% Similarity=0.204 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~---~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
|...+..|...+..+ +..|+.++.|+|||..+.+++..+...
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 444455554444444 356999999999999999998887543
No 293
>PRK06893 DNA replication initiation factor; Validated
Probab=93.13 E-value=0.67 Score=47.15 Aligned_cols=27 Identities=11% Similarity=-0.023 Sum_probs=21.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 003450 306 HVILADEMGLGKTIQSIAFLASLFGER 332 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l~~~~ 332 (819)
..+|.+++|+|||..+.++...+...+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~ 67 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 458999999999988888877765443
No 294
>PRK05642 DNA replication initiation factor; Validated
Probab=93.01 E-value=0.68 Score=47.29 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=23.4
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~ 340 (819)
...+|.++.|+|||.-+-++..++...+ ..++++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~-~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRG-EPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEee
Confidence 4578999999999988776665554332 2444433
No 295
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=93.01 E-value=0.048 Score=56.95 Aligned_cols=25 Identities=44% Similarity=0.789 Sum_probs=21.9
Q ss_pred hhhhhhccCCCcccccccChH-HHHH
Q 003450 131 KQYLVKWKGLSYLHCTWVPEK-EFLK 155 (819)
Q Consensus 131 ~eylVKw~~~s~~h~~W~~~~-~l~~ 155 (819)
.+|||||+|++..+++|+|++ .+.|
T Consensus 64 ~eYlvkW~Gy~~~~ntWEPee~~~~C 89 (270)
T KOG1911|consen 64 IEYLVKWKGYPDPDNTWEPEEHNLDC 89 (270)
T ss_pred ceeeeecCCCCCccccCCchhhcccc
Confidence 689999999999999999997 4444
No 296
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.94 E-value=0.96 Score=52.95 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHhhcCCC--c-eEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 289 YQLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 289 ~Q~~~v~~l~~~~~~~~--~-~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
.|...+..|...+..++ + .|+.++.|+|||..+.+++..+..
T Consensus 20 Gq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 20 GQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35566666666555543 2 489999999999999999988753
No 297
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=92.93 E-value=0.051 Score=58.25 Aligned_cols=49 Identities=27% Similarity=0.601 Sum_probs=35.8
Q ss_pred cccccccccC-----CCCeEecCCCCccccccCcCCCC-CCCCC-------CCcccCccCCC
Q 003450 50 KDDSCQACGE-----SENLMSCDTCTYAYHAKCLVPPL-KAPPS-------GSWRCPECVSP 98 (819)
Q Consensus 50 ~~~~C~~c~~-----~~~~~~C~~C~~~~H~~c~~p~~-~~~~~-------~~w~C~~c~~~ 98 (819)
.-.+|.||-. .|+++.||.|+-..|-.|..--- ..+|. ..|||..|...
T Consensus 118 k~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~G 179 (707)
T KOG0957|consen 118 KAVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYG 179 (707)
T ss_pred cceEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcC
Confidence 3458999963 35699999999999999995431 12232 45999999853
No 298
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.90 E-value=0.39 Score=53.62 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=25.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcCCCC-ceEEEe
Q 003450 306 HVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVA 340 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l~~~~~~-~~LIv~ 340 (819)
..+|.++.|+|||..+.++...+.....+ .++.+.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 46899999999999988888877655333 455543
No 299
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=92.84 E-value=0.96 Score=54.62 Aligned_cols=42 Identities=19% Similarity=0.075 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~---~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
|...+..|...+..+ +..||.++.|+|||..+..++..|...
T Consensus 20 qe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 20 QEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred cHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 333444444444443 335899999999999999999888653
No 300
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.75 E-value=0.85 Score=53.41 Aligned_cols=43 Identities=19% Similarity=0.046 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 289 YQLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 289 ~Q~~~v~~l~~~~~~~---~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
.|.+.+..|...+..+ ...|+.++.|+|||..|.+++..+...
T Consensus 20 Gq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 20 GQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 3555566665555554 345899999999999999999988653
No 301
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.71 E-value=0.64 Score=53.76 Aligned_cols=42 Identities=26% Similarity=0.206 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~~---~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
|...+..|......++ ..|+.++.|.|||..|.+++..+...
T Consensus 21 qe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 21 QDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 3344444444444443 35899999999999999999888643
No 302
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.70 E-value=0.88 Score=52.37 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~---~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
|...+..|......+ +..|+.++.|+|||..|..++..+..
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444555554444443 34589999999999999998888754
No 303
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=92.64 E-value=0.61 Score=52.54 Aligned_cols=46 Identities=15% Similarity=-0.011 Sum_probs=29.7
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCC-ceEEEecCcchHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTLRNWER 350 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~-~~LIv~P~~ll~qW~~ 350 (819)
...+|.+++|+|||..+-++..++.....+ .++.+.+...+.....
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~ 188 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVD 188 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHH
Confidence 357899999999998887777766543333 5555554444433333
No 304
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=92.60 E-value=0.14 Score=47.46 Aligned_cols=34 Identities=35% Similarity=0.870 Sum_probs=26.2
Q ss_pred eEecCCCCccccccCcCCCCCCC------------------CCCCcccCccC
Q 003450 63 LMSCDTCTYAYHAKCLVPPLKAP------------------PSGSWRCPECV 96 (819)
Q Consensus 63 ~~~C~~C~~~~H~~c~~p~~~~~------------------~~~~w~C~~c~ 96 (819)
|++|..|.++||+.+|+|+-... -..+|.|.+|.
T Consensus 124 LFRC~~C~RawH~~HLP~~~~~~~~~~~~~~~~~~~~R~~EYs~~W~C~dC~ 175 (175)
T PF15446_consen 124 LFRCTSCHRAWHFEHLPPPSGTTSDDDDDDDTDLRSQRLKEYSIDWQCKDCA 175 (175)
T ss_pred EEecCCccceeehhhCCCCcCCCCCcccccchhHHHHHHHHhCCccccCCCC
Confidence 88899999999999997764211 13469999984
No 305
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.41 E-value=1.3 Score=48.03 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=34.8
Q ss_pred ceEEEecccccccCcccH--HHHHHHhc--ccCcEEEEeCCCCCCChhHHHhhhcccCCCC
Q 003450 429 WQCMIVDEGHRLKNKDSK--LFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGK 485 (819)
Q Consensus 429 ~~~lIvDEaH~~kn~~s~--~~~~l~~l--~~~~~llLTgTP~~n~~~el~~ll~~l~~~~ 485 (819)
.|+|.||=+-+---+... ..+++... .....|.||+|--..++.+++..+..+...-
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~ 342 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDG 342 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcce
Confidence 478888866543211111 12222222 2345689999998888999888887776543
No 306
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=92.38 E-value=0.48 Score=50.74 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=18.8
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLAS 327 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~ 327 (819)
-.+.||.+++|+|||..|-.+...
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999777555544
No 307
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=92.38 E-value=0.2 Score=53.67 Aligned_cols=63 Identities=19% Similarity=0.160 Sum_probs=43.9
Q ss_pred CchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC---CCceEEEecCcch-HHHHHHHHH
Q 003450 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTL-RNWEREFAT 354 (819)
Q Consensus 286 L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~---~~~~LIv~P~~ll-~qW~~e~~~ 354 (819)
|.+-|..+++ ...+..++.+..|+|||.+.+.-+.++...+ +..+|+++++... ..-...+..
T Consensus 1 l~~eQ~~~i~------~~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 1 LTDEQRRIIR------STEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp S-HHHHHHHH------S-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHh------CCCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 5677888887 3567788888899999999988888876544 3489999997543 334444444
No 308
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.36 E-value=0.14 Score=49.73 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=28.7
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 003450 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (819)
Q Consensus 301 ~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~ 340 (819)
...+.|.+|.+++|+|||..|.+++..+...+ .+++++.
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g-~~v~f~~ 82 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRKG-YSVLFIT 82 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEE
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccCC-cceeEee
Confidence 36778999999999999999999998887744 3566654
No 309
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.35 E-value=0.7 Score=56.36 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhh--cCCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 290 QLEGLNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 290 Q~~~v~~l~~~~--~~~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
|.+-+..+...+ ....+.||.++.|+|||..+=+++..+..
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 444466665433 33468999999999999988777776643
No 310
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=92.32 E-value=0.93 Score=47.26 Aligned_cols=45 Identities=24% Similarity=0.300 Sum_probs=28.3
Q ss_pred cccCCccceEEEecccccc-cCcccHH---HHHHHhcccC--cEEEEeCCC
Q 003450 422 ASLKPIKWQCMIVDEGHRL-KNKDSKL---FSSLKQYSTR--HRVLLTGTP 466 (819)
Q Consensus 422 ~~l~~~~~~~lIvDEaH~~-kn~~s~~---~~~l~~l~~~--~~llLTgTP 466 (819)
..++..+..+|||||.|++ .+...+. ..+++.+... --+.+.||+
T Consensus 139 ~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 139 RLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 4456677889999999996 4433333 3444444333 336677886
No 311
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.30 E-value=1.2 Score=50.59 Aligned_cols=42 Identities=26% Similarity=0.146 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHhhcCCC--c-eEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 289 YQLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 289 ~Q~~~v~~l~~~~~~~~--~-~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
-|...+..|......++ + .++.++.|+|||..|..++..+..
T Consensus 20 Gq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 20 GQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35556666656555543 3 368999999999999888887753
No 312
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=92.26 E-value=0.6 Score=47.04 Aligned_cols=60 Identities=27% Similarity=0.267 Sum_probs=36.4
Q ss_pred HHHHHHHhhcCCC-ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchH------HHHHHHHH
Q 003450 293 GLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR------NWEREFAT 354 (819)
Q Consensus 293 ~v~~l~~~~~~~~-~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~------qW~~e~~~ 354 (819)
++..+......++ -+.+.++.|+|||+..=+++..+.+ ...+.|+.|+.++. -|..++..
T Consensus 39 ~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~ 105 (269)
T COG3267 39 ALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNE--DQVAVVVIDKPTLSDATLLEAIVADLES 105 (269)
T ss_pred HHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCC--CceEEEEecCcchhHHHHHHHHHHHhcc
Confidence 3433433444555 5668999999999998855555432 22455788876653 35555543
No 313
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=92.22 E-value=0.049 Score=60.83 Aligned_cols=96 Identities=27% Similarity=0.467 Sum_probs=59.5
Q ss_pred cccccccccCCCC-----eEecCCCCccccccCcCCCCCCC-CCCCcccCccCCC-----CcccccccccccccCcCCCC
Q 003450 50 KDDSCQACGESEN-----LMSCDTCTYAYHAKCLVPPLKAP-PSGSWRCPECVSP-----LNDIDKILDCEMRPTVAGDS 118 (819)
Q Consensus 50 ~~~~C~~c~~~~~-----~~~C~~C~~~~H~~c~~p~~~~~-~~~~w~C~~c~~~-----~~~~~~il~~r~~p~~~~~~ 118 (819)
.+.+|.+|+..|. |+.|..|...||.+|+.--+... -.+.|.|+.|..- .+++.+.+.+. ..+.
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD~~kf~~Ck-----~cDv 91 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGDPKKFLLCK-----RCDV 91 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCCcccccccc-----cccc
Confidence 4677999986553 99999999999999996444332 2344999999842 22333333331 1233
Q ss_pred Ccccccccc----hhhhhhhhhccCCCcccccccCh
Q 003450 119 DVSKLGSKQ----IFVKQYLVKWKGLSYLHCTWVPE 150 (819)
Q Consensus 119 ~~~~~~~~~----~~~~eylVKw~~~s~~h~~W~~~ 150 (819)
++.--..++ ...-.|+.||.-+=+.|..=+|.
T Consensus 92 syh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg 127 (694)
T KOG4443|consen 92 SYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPG 127 (694)
T ss_pred cccccccCCccccccCcccccHHHHhhhhccccccc
Confidence 333212222 23358899998777777766655
No 314
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=92.15 E-value=0.071 Score=49.29 Aligned_cols=46 Identities=28% Similarity=0.785 Sum_probs=33.1
Q ss_pred ccccccCC------CCeEecCCCCccccccCcCCCCC------CCCCCC--cccCccCCC
Q 003450 53 SCQACGES------ENLMSCDTCTYAYHAKCLVPPLK------APPSGS--WRCPECVSP 98 (819)
Q Consensus 53 ~C~~c~~~------~~~~~C~~C~~~~H~~c~~p~~~------~~~~~~--w~C~~c~~~ 98 (819)
+|.+|+.. |.|+.|.+|..+||..||.|-.. .+..++ -.|..|...
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~ 60 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGI 60 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcCh
Confidence 47888532 44999999999999999987643 233344 478888753
No 315
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.08 E-value=0.99 Score=52.28 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=27.4
Q ss_pred HHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 293 GLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 293 ~v~~l~~~~~~~---~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
.+..|......+ ...|+.++.|+|||..|..++..+..
T Consensus 24 v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 24 VKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 344444444443 34678999999999999999988864
No 316
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=92.05 E-value=0.48 Score=47.15 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=18.1
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l 328 (819)
.+.|+.+++|+|||..|-.++..+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCccchhHHHHHHHhcc
Confidence 468999999999997665555543
No 317
>PHA02533 17 large terminase protein; Provisional
Probab=91.98 E-value=0.91 Score=52.12 Aligned_cols=55 Identities=20% Similarity=0.122 Sum_probs=37.7
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH-hcCCCCceEEEecC
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL-FGERISPHLVVAPL 342 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l-~~~~~~~~LIv~P~ 342 (819)
..|+|+|..-+..+ ..++-.++.-.=..|||..+.+++.++ .......+++++|.
T Consensus 58 f~L~p~Q~~i~~~~----~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~ 113 (534)
T PHA02533 58 VQMRDYQKDMLKIM----HKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHK 113 (534)
T ss_pred cCCcHHHHHHHHHH----hcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 56999999988765 234455677788899998877655433 22333477888885
No 318
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=91.96 E-value=1.4 Score=46.97 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=39.0
Q ss_pred CCchhHHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~---~~iLade~GlGKT~~~i~~l~~l~~~~ 332 (819)
.++|+|...-..+...+..++ ..++.++.|+||+..|.+++..+....
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 478899888888877665554 567899999999999999999987654
No 319
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=91.95 E-value=0.41 Score=52.34 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=37.7
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~ 355 (819)
..+.-.+|.+++|.|||..++.++..+...+ +++|+|.-.....|......++
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g-~~VlYvs~EEs~~qi~~Ra~rl 132 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRG-GKVLYVSGEESPEQIKLRADRL 132 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCcCHHHHHHHHHHc
Confidence 4455678999999999999988887765433 4788887765566655444443
No 320
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=91.93 E-value=0.086 Score=58.89 Aligned_cols=47 Identities=32% Similarity=0.805 Sum_probs=40.5
Q ss_pred ccccccccCCCCeEecCCCCccccccCcCCCCC-CCCCCCcccCccCC
Q 003450 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLK-APPSGSWRCPECVS 97 (819)
Q Consensus 51 ~~~C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~-~~~~~~w~C~~c~~ 97 (819)
-..|.+|.++|++++|+.|+.+||..|..+++. +.+.+.|.|..|-.
T Consensus 47 ~ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~ 94 (613)
T KOG4299|consen 47 ATSCGICKSGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPK 94 (613)
T ss_pred hhhcchhhhcCCccccccCccccchhccCcccCcccccccccccCCCc
Confidence 567999999999999999999999999999986 23456788888865
No 321
>PRK04195 replication factor C large subunit; Provisional
Probab=91.83 E-value=1.7 Score=49.68 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.2
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
.+.++|.++.|+|||..+-+++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4678999999999999888777665
No 322
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=91.81 E-value=1.2 Score=49.63 Aligned_cols=46 Identities=22% Similarity=0.180 Sum_probs=31.5
Q ss_pred chhHHHHHHHHHHhh-c--CCCceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 003450 287 HPYQLEGLNFLRFSW-S--KQTHVILADEMGLGKTIQSIAFLASLFGER 332 (819)
Q Consensus 287 ~~~Q~~~v~~l~~~~-~--~~~~~iLade~GlGKT~~~i~~l~~l~~~~ 332 (819)
|+-|++.+....... . ...+++|.++.|+|||..+-.++..+....
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 556656554433222 2 335789999999999999988888775543
No 323
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.81 E-value=1.7 Score=50.74 Aligned_cols=42 Identities=19% Similarity=0.144 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~---~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
|.+.+..|......+ +..|+.++.|+|||..+.+++..+...
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 334444454444444 234899999999999999999887643
No 324
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=91.75 E-value=0.5 Score=43.00 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=25.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcch
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll 345 (819)
.+|.++.|+|||..+-.++..+ ..+++.+....+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----GFPFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----TSEEEEEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhc----ccccccccccccc
Confidence 4789999999999888877765 1255555555444
No 325
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=91.65 E-value=0.6 Score=52.50 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=26.8
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCC-ceEEEec
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAP 341 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~-~~LIv~P 341 (819)
...+|.+++|+|||..+-++...+.....+ .++.+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 357899999999999888888777654433 4555443
No 326
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=91.65 E-value=0.097 Score=38.81 Aligned_cols=30 Identities=27% Similarity=0.862 Sum_probs=25.7
Q ss_pred ccccccccC----CCCeEecCCCCccccccCcCC
Q 003450 51 DDSCQACGE----SENLMSCDTCTYAYHAKCLVP 80 (819)
Q Consensus 51 ~~~C~~c~~----~~~~~~C~~C~~~~H~~c~~p 80 (819)
...|.+|++ +++++.|..|...||-.|+..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 456999985 567999999999999999954
No 327
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=91.58 E-value=1.6 Score=47.09 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=34.8
Q ss_pred CchhHHHHHHHHHHhhcC-CCceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 003450 286 LHPYQLEGLNFLRFSWSK-QTHVILADEMGLGKTIQSIAFLASLFGER 332 (819)
Q Consensus 286 L~~~Q~~~v~~l~~~~~~-~~~~iLade~GlGKT~~~i~~l~~l~~~~ 332 (819)
++|+|...-+.+...... .+..++.++.|.|||..|..++..+....
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 467777776666554222 34566899999999999999999987644
No 328
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=91.57 E-value=1.2 Score=52.36 Aligned_cols=42 Identities=19% Similarity=0.129 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~~---~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
|..++..|......++ ..|+.++.|.|||..|-+++..+...
T Consensus 23 Qe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 23 QDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 4445555555555443 34799999999999999998887543
No 329
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=91.44 E-value=2.9 Score=48.28 Aligned_cols=129 Identities=16% Similarity=0.223 Sum_probs=68.6
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcC-CCCceEEEecC-cchHHHHHHH----HHHcCCCeEEEEecChhHHHHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPL-STLRNWEREF----ATWAPQMNVVMYVGTSQARNIIRE 376 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~-~~~~~LIv~P~-~ll~qW~~e~----~~~~p~~~v~~~~g~~~~r~~~~~ 376 (819)
+++-.+..-+==-|||..+.+.+..+... ..-.+++++|. ++...--+++ ++|+|...+....|. .+ .
T Consensus 253 kqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-----~I-~ 326 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-----TI-S 326 (738)
T ss_pred hccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-----EE-E
Confidence 34455666677889998777666655433 23489999994 5554444444 456654333222221 00 0
Q ss_pred hhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccccccCcccHHHHHH--Hhc
Q 003450 377 YEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSL--KQY 454 (819)
Q Consensus 377 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~~kn~~s~~~~~l--~~l 454 (819)
+++ + ...+..+.+.|- .....++...++++||||||.++... +...+ ..-
T Consensus 327 i~f--~--------------------nG~kstI~FaSa----rntNsiRGqtfDLLIVDEAqFIk~~a--l~~ilp~l~~ 378 (738)
T PHA03368 327 FSF--P--------------------DGSRSTIVFASS----HNTNGIRGQDFNLLFVDEANFIRPDA--VQTIMGFLNQ 378 (738)
T ss_pred EEe--c--------------------CCCccEEEEEec----cCCCCccCCcccEEEEechhhCCHHH--HHHHHHHHhc
Confidence 000 0 001112333211 22344666789999999999996522 22222 122
Q ss_pred ccCcEEEEeCC
Q 003450 455 STRHRVLLTGT 465 (819)
Q Consensus 455 ~~~~~llLTgT 465 (819)
.....|.+|.|
T Consensus 379 ~n~k~I~ISS~ 389 (738)
T PHA03368 379 TNCKIIFVSST 389 (738)
T ss_pred cCccEEEEecC
Confidence 35567888766
No 330
>PRK13342 recombination factor protein RarA; Reviewed
Probab=91.41 E-value=1 Score=50.39 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=19.7
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l 328 (819)
...+|.++.|+|||..+-++...+
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999998887776543
No 331
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=91.36 E-value=1.4 Score=47.55 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=38.2
Q ss_pred CCchhHHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~---~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
.++|+|...-..+...+..++ ..++.++.|+||+..|.+++.++...
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~ 51 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ 51 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 367888888888877766554 45689999999999999999998764
No 332
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.36 E-value=2.5 Score=49.13 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=21.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
..|+.++.|+|||..|-.++..+...
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 35779999999999999988887543
No 333
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=91.35 E-value=0.73 Score=51.77 Aligned_cols=36 Identities=25% Similarity=0.149 Sum_probs=26.6
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P 341 (819)
...+|.++.|+|||..+-++...+...+ .+++.+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~-~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESG-GKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcC-CCEEEeeH
Confidence 4578999999999999888888776543 35555543
No 334
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=91.33 E-value=0.35 Score=46.70 Aligned_cols=36 Identities=19% Similarity=0.012 Sum_probs=24.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCc
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ 343 (819)
-++.++|.+|||..-|-.+..+.. ...+++|..|..
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~-~g~~v~vfkp~i 42 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKE-AGMKVLVFKPAI 42 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHH-cCCeEEEEeccc
Confidence 467899999999866555544432 334788888863
No 335
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.32 E-value=0.9 Score=52.38 Aligned_cols=43 Identities=19% Similarity=0.010 Sum_probs=28.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcCCCC-ceEEEecCcchHHH
Q 003450 306 HVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTLRNW 348 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l~~~~~~-~~LIv~P~~ll~qW 348 (819)
..+|.++.|+|||..+-++..++.....+ .++.+.-..++..+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 47899999999998888887776543222 44544443433333
No 336
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.24 E-value=2.3 Score=49.07 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 003450 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGER 332 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~---~~~iLade~GlGKT~~~i~~l~~l~~~~ 332 (819)
|-..+..+...+..+ +..|+.++.|+|||..|.+++..+....
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~ 66 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN 66 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 334444454444443 3467899999999999999999886543
No 337
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=90.97 E-value=2.9 Score=40.93 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=23.1
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
+..|+.++.|.|||..+..++..+...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 457899999999999999999888654
No 338
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.96 E-value=2.6 Score=47.74 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=26.6
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEe
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVA 340 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~-~~~~LIv~ 340 (819)
..++...|.+++|.|||.++..++..+...+ .+.+.+|.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 3456677899999999998877776654433 23555544
No 339
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=90.70 E-value=0.29 Score=58.03 Aligned_cols=111 Identities=19% Similarity=0.235 Sum_probs=73.2
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcC-CCCceEEEecC-cch----HHHHHHHHHHcCCCeEEEEecChhHHHHHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPL-STL----RNWEREFATWAPQMNVVMYVGTSQARNIIR 375 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~-~~~~~LIv~P~-~ll----~qW~~e~~~~~p~~~v~~~~g~~~~r~~~~ 375 (819)
....+.++.+++|+|||+.+-..+...... ..+++.+|+|. .++ ..|...+. .|+++++-..|.....
T Consensus 941 ~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~--~~g~k~ie~tgd~~pd---- 1014 (1230)
T KOG0952|consen 941 HTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDE--LPGIKVIELTGDVTPD---- 1014 (1230)
T ss_pred ecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcc--cCCceeEeccCccCCC----
Confidence 455678899999999999875555544444 44599999994 444 45765543 2477777777664332
Q ss_pred HhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCc----cceEEEecccccccCc
Q 003450 376 EYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI----KWQCMIVDEGHRLKNK 443 (819)
Q Consensus 376 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~----~~~~lIvDEaH~~kn~ 443 (819)
.......+++|||++............ .+..+|+||.|-++..
T Consensus 1015 -------------------------~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1015 -------------------------VKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred -------------------------hhheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 012346789999999875433222211 3467999999988653
No 340
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=90.63 E-value=1.2 Score=52.38 Aligned_cols=111 Identities=21% Similarity=0.237 Sum_probs=87.8
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHH
Q 003450 536 LRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDK 615 (819)
Q Consensus 536 v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ 615 (819)
....+++.|...+..+.... -..+++|+.+.. .|||.+...+
T Consensus 195 ~~~~Ln~~Q~~a~~~i~~~~-----------------------~~~~~~Ll~GvT---------------GSGKTEvYl~ 236 (730)
T COG1198 195 EWLALNQEQQAAVEAILSSL-----------------------GGFAPFLLDGVT---------------GSGKTEVYLE 236 (730)
T ss_pred cccccCHHHHHHHHHHHHhc-----------------------ccccceeEeCCC---------------CCcHHHHHHH
Confidence 34678999999988776541 134677776654 7999999999
Q ss_pred HHHHHHhcCceEEEEecchhHHHHHHHHHhh-CCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccc
Q 003450 616 MMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (819)
Q Consensus 616 ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~-~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~ 687 (819)
++....++|+.+||...-+.....+.+.|.. .|.++..++++.+..+|.....+...+... +++.|+++
T Consensus 237 ~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~---vVIGtRSA 306 (730)
T COG1198 237 AIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEAR---VVIGTRSA 306 (730)
T ss_pred HHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCce---EEEEechh
Confidence 9999999999999999988777777766654 478999999999999999999999776543 56666653
No 341
>PRK11054 helD DNA helicase IV; Provisional
Probab=90.58 E-value=1 Score=53.36 Aligned_cols=68 Identities=18% Similarity=0.114 Sum_probs=50.8
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC---CCceEEEecCcchHHHHHH-HHHHcC
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLRNWERE-FATWAP 357 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~---~~~~LIv~P~~ll~qW~~e-~~~~~p 357 (819)
..|.+-|.++|. ...++.++.+..|+|||.+.++-+.++...+ +..+|+++.+....+..++ +....+
T Consensus 195 ~~L~~~Q~~av~------~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 195 SPLNPSQARAVV------NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred CCCCHHHHHHHh------CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 349999999986 3345667777899999999999998887543 2389999998766665444 655543
No 342
>PTZ00293 thymidine kinase; Provisional
Probab=90.56 E-value=0.48 Score=46.90 Aligned_cols=36 Identities=14% Similarity=0.104 Sum_probs=26.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCc
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ 343 (819)
-++.++||+|||...|-.+..+.. ...+++++-|..
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~~-ag~kv~~~kp~~ 42 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFTY-SEKKCVVIKYSK 42 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHHH-cCCceEEEEecc
Confidence 467999999999777666554433 335888888853
No 343
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.53 E-value=2 Score=44.61 Aligned_cols=49 Identities=14% Similarity=0.212 Sum_probs=31.4
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec-C---cchHHHHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-L---STLRNWEREF 352 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P-~---~ll~qW~~e~ 352 (819)
.+....+.++.|+|||..+..++..+...+ .++.++.- . ..+.||....
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~-~~v~~i~~D~~ri~~~~ql~~~~ 126 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK-KTVGFITTDHSRIGTVQQLQDYV 126 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHHh
Confidence 446778999999999988777666654433 34554444 2 3556666433
No 344
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=90.43 E-value=3.8 Score=47.18 Aligned_cols=127 Identities=20% Similarity=0.246 Sum_probs=87.9
Q ss_pred EEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHH-H
Q 003450 535 ILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQL-L 613 (819)
Q Consensus 535 ~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~-l 613 (819)
.++.+||..|+...++|........ -+++|-| +. -.|||.-+ +
T Consensus 258 ~LPF~LT~aQ~~vi~EI~~Dl~~~~------------~M~RLlQ---------GD---------------VGSGKTvVA~ 301 (677)
T COG1200 258 ALPFKLTNAQKRVIKEILADLASPV------------PMNRLLQ---------GD---------------VGSGKTVVAL 301 (677)
T ss_pred hCCCCccHHHHHHHHHHHhhhcCch------------hhHHHhc---------cC---------------cCCCHHHHHH
Confidence 4567899999999998876532110 1111111 10 14777544 4
Q ss_pred HHHHHHHHhcCceEEEEecc----hhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccc-c
Q 003450 614 DKMMVKLKEQGHRVLIYSQF----QHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG-G 688 (819)
Q Consensus 614 ~~ll~~l~~~g~kvlIFs~~----~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~-~ 688 (819)
..++.. ...|.++.+.... .++.+-+.++|...|+.+..++|++...+|++++.+..++..+ ++|.|.|. -
T Consensus 302 laml~a-i~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~---ivVGTHALiQ 377 (677)
T COG1200 302 LAMLAA-IEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEID---IVVGTHALIQ 377 (677)
T ss_pred HHHHHH-HHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCC---EEEEcchhhh
Confidence 445544 4568888888775 4567788889988899999999999999999999999877655 67777775 6
Q ss_pred ccCCcccCCEEEE
Q 003450 689 LGINLATADTVII 701 (819)
Q Consensus 689 ~GinL~~a~~VI~ 701 (819)
..+++...-.||+
T Consensus 378 d~V~F~~LgLVIi 390 (677)
T COG1200 378 DKVEFHNLGLVII 390 (677)
T ss_pred cceeecceeEEEE
Confidence 6676666555554
No 345
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=90.42 E-value=1.4 Score=48.21 Aligned_cols=40 Identities=18% Similarity=0.410 Sum_probs=26.9
Q ss_pred cceEEEecccccccCccc---HHHHHHHhcc-cCcEEEEeC--CCC
Q 003450 428 KWQCMIVDEGHRLKNKDS---KLFSSLKQYS-TRHRVLLTG--TPL 467 (819)
Q Consensus 428 ~~~~lIvDEaH~~kn~~s---~~~~~l~~l~-~~~~llLTg--TP~ 467 (819)
..++++||..|.+.+... ..+..+..+. ....|++|+ +|-
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~ 220 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPK 220 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCch
Confidence 457899999999977633 3444444443 345888888 563
No 346
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=90.42 E-value=1.9 Score=53.30 Aligned_cols=59 Identities=14% Similarity=-0.015 Sum_probs=42.7
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcch
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll 345 (819)
+..|.+-|.+++..+. ..++-++|.+.-|+|||.+.-++...+ +....+++.++|+.-.
T Consensus 379 ~~~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~~~-e~~G~~V~g~ApTgkA 437 (1102)
T PRK13826 379 HARLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAAREAW-EAAGYRVVGGALAGKA 437 (1102)
T ss_pred CCCCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHHHH-HHcCCeEEEEcCcHHH
Confidence 3579999999998662 345668899999999997766655444 3333478888887544
No 347
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=90.37 E-value=0.3 Score=49.80 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=19.0
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l 328 (819)
..++|.+++|+|||..|-.++..+
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHHh
Confidence 468999999999997776555554
No 348
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=90.24 E-value=1.2 Score=53.16 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=19.6
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l 328 (819)
.+.||.++.|+|||..+-++...+
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999998887766543
No 349
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.07 E-value=1.6 Score=51.05 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~---~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
|...+..|...+..+ +..|+.++.|+|||..|..++..+...
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 556666666665554 346799999999999999999888653
No 350
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=90.05 E-value=0.54 Score=52.77 Aligned_cols=62 Identities=21% Similarity=0.285 Sum_probs=45.4
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-----CCceEEEecCcchHHHHHH
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-----ISPHLVVAPLSTLRNWERE 351 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~-----~~~~LIv~P~~ll~qW~~e 351 (819)
++.+-|-+.+. ...++-.|+.+..|+|||..|+.-+++|+... .+|+||+.|+.+.......
T Consensus 212 TIQkEQneIIR-----~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~ 278 (747)
T COG3973 212 TIQKEQNEIIR-----FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISR 278 (747)
T ss_pred HhhHhHHHHHh-----ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHH
Confidence 34445656543 24566678999999999999998888886543 3489999999887665543
No 351
>PRK10865 protein disaggregation chaperone; Provisional
Probab=90.00 E-value=1.1 Score=54.74 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=28.0
Q ss_pred HHHHHHHhh--cCCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 293 GLNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 293 ~v~~l~~~~--~~~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
-+..+...+ ....+.||.+++|+|||..+-+++..+..
T Consensus 186 ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 186 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 355554422 34568999999999999999888877654
No 352
>PRK11823 DNA repair protein RadA; Provisional
Probab=89.88 E-value=0.92 Score=51.04 Aligned_cols=62 Identities=15% Similarity=0.094 Sum_probs=42.3
Q ss_pred HHHHHHH-hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHH
Q 003450 293 GLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (819)
Q Consensus 293 ~v~~l~~-~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~ 355 (819)
+++.+.. .+..+.-.+|.+++|+|||..++.++..+... ..++|.+.-.....|......++
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ees~~qi~~ra~rl 130 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEESASQIKLRAERL 130 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccccHHHHHHHHHHc
Confidence 4444432 23445567899999999999998888776533 34788888776666665555544
No 353
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=89.87 E-value=1.3 Score=49.33 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=26.9
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P 341 (819)
...++++.+|+|||.++..++.++...+..+.||-+.
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4567899999999999988888776655434444443
No 354
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=89.74 E-value=4.6 Score=46.90 Aligned_cols=59 Identities=17% Similarity=0.044 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHH
Q 003450 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRN 347 (819)
Q Consensus 288 ~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~q 347 (819)
|+=.+-++.+...+.+.-.+++ .+=|-|||..+..++..+.......+++.+|. +....
T Consensus 172 ~~~~~~id~~~~~fkq~~tV~t-aPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~e 231 (752)
T PHA03333 172 PRTLREIDRIFDEYGKCYTAAT-VPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLT 231 (752)
T ss_pred hhhHHHHHHHHHHHhhcceEEE-eccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHH
Confidence 4444556666666655555544 57899999887666656554223489999995 44444
No 355
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=89.68 E-value=2 Score=51.18 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=30.8
Q ss_pred CchhHHHHHHHHHHh-hcC-C-Cce-EEEcCCCCcHHHHHHHHHHHHh
Q 003450 286 LHPYQLEGLNFLRFS-WSK-Q-THV-ILADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 286 L~~~Q~~~v~~l~~~-~~~-~-~~~-iLade~GlGKT~~~i~~l~~l~ 329 (819)
=|+-|.+.+...+.. ... + .++ +|.+.+|+|||.++-.++..+.
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 477788877554333 322 2 234 4899999999999988887764
No 356
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.59 E-value=2.6 Score=48.36 Aligned_cols=95 Identities=13% Similarity=0.148 Sum_probs=71.7
Q ss_pred hcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhh-CCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEec
Q 003450 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS 683 (819)
Q Consensus 605 ~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~-~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~s 683 (819)
..|||......++......|.++||.+..+.....+.+.|.. .|..+..++|.++..+|.+...+...++.. |++.
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~---IVVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL---VVIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC---EEEC
Confidence 368999998888888888899999999998887777777754 477899999999999998887777654433 5666
Q ss_pred cccccccCCcccCCEEEEeC
Q 003450 684 TRAGGLGINLATADTVIIYD 703 (819)
Q Consensus 684 t~a~~~GinL~~a~~VI~~d 703 (819)
|+..- =+-+.....||+-+
T Consensus 83 Trsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 83 TRSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred ChHHH-cCcccCCCEEEEEC
Confidence 66532 23455666677654
No 357
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=89.58 E-value=1.4 Score=47.42 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=24.5
Q ss_pred CCc-eEEEcCCCCcHHHHHHHHHHHHhcCC
Q 003450 304 QTH-VILADEMGLGKTIQSIAFLASLFGER 332 (819)
Q Consensus 304 ~~~-~iLade~GlGKT~~~i~~l~~l~~~~ 332 (819)
... .++.++.|+|||..|.+++..+....
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~~~~ 52 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELLCEN 52 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHhCCC
Confidence 344 88999999999999999999987543
No 358
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=89.48 E-value=0.99 Score=51.19 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=72.1
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCC-ceEEEecC-cch----HHHHHHHHHHcCCCeEEEEecChhHHHHHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-STL----RNWEREFATWAPQMNVVMYVGTSQARNIIR 375 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~-~~LIv~P~-~ll----~qW~~e~~~~~p~~~v~~~~g~~~~r~~~~ 375 (819)
++.-.+.| -|=--|||...+++|.-++..-.+ .+..++.. ++. ..-...+.+|+|.-+++...|+.
T Consensus 201 KQkaTVFL-VPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~t------- 272 (668)
T PHA03372 201 KQKATVFL-VPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNV------- 272 (668)
T ss_pred hccceEEE-ecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcE-------
Confidence 33334444 377789998888888777665444 78888884 333 33445567899865553222210
Q ss_pred HhhhcCCCCccccccccCCccccccccccccccEEEch-hhHHhhcccccCCccceEEEecccccccCcccHHHHHHHhc
Q 003450 376 EYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTS-YEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQY 454 (819)
Q Consensus 376 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~t-y~~l~~~~~~l~~~~~~~lIvDEaH~~kn~~s~~~~~l~~l 454 (819)
+..... ..+..++.+| ++ .+.++.-.|++++|||||-++...-...--+..-
T Consensus 273 ---------------------I~~s~p-g~Kst~~fasc~n-----~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q 325 (668)
T PHA03372 273 ---------------------ISIDHR-GAKSTALFASCYN-----TNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQ 325 (668)
T ss_pred ---------------------EEEecC-CCcceeeehhhcc-----CccccCCCCCEEEEehhhccCHHHHHHhhhhhcc
Confidence 000001 1122233332 22 3456667899999999999965332222222333
Q ss_pred ccCcEEEEeCC
Q 003450 455 STRHRVLLTGT 465 (819)
Q Consensus 455 ~~~~~llLTgT 465 (819)
+....|.+|.|
T Consensus 326 ~~~KiIfISS~ 336 (668)
T PHA03372 326 NTTKIIFISST 336 (668)
T ss_pred cCceEEEEeCC
Confidence 45566777766
No 359
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.44 E-value=1.2 Score=47.40 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=35.4
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~ 355 (819)
=+++++++++|+|||+.|=|++... ...|.=|.-..+...|.-|-++.
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc----~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATEC----GTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhh----cCeEEEechhhhhhhhccchHHH
Confidence 3688999999999999887776643 12455555567778898886664
No 360
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=89.26 E-value=2 Score=40.55 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=27.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcc
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~l 344 (819)
.+|.++.|+|||..+..++...... .++++++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK-GGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc-CCEEEEEECCcc
Confidence 4789999999999998888777542 346777666433
No 361
>PRK04132 replication factor C small subunit; Provisional
Probab=89.24 E-value=2 Score=51.67 Aligned_cols=52 Identities=13% Similarity=0.255 Sum_probs=31.9
Q ss_pred cceEEEecccccccCcc-cHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhc
Q 003450 428 KWQCMIVDEGHRLKNKD-SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH 479 (819)
Q Consensus 428 ~~~~lIvDEaH~~kn~~-s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~ 479 (819)
++.++|+||||++-... ..+.+.+.......+++|+.++...-+.-|-|-+.
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~ 682 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 682 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhce
Confidence 46799999999994321 22333344445667888888876554444444433
No 362
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.10 E-value=0.45 Score=50.32 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=36.2
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHc
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~ 356 (819)
...+|.+|.+++|+|||..|-+..... ..+++=|-=..+...|-.|-.+..
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Akea----ga~fInv~~s~lt~KWfgE~eKlv 175 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAKEA----GANFINVSVSNLTSKWFGEAQKLV 175 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHHHc----CCCcceeeccccchhhHHHHHHHH
Confidence 467899999999999999887766542 235555555666677876665543
No 363
>CHL00095 clpC Clp protease ATP binding subunit
Probab=89.08 E-value=1.4 Score=53.86 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=23.3
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
...+.||.+++|.|||..+-+++..+..
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i~~ 226 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIVN 226 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4568899999999999998888777654
No 364
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.00 E-value=2.1 Score=47.13 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=19.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHH
Q 003450 306 HVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l 328 (819)
-.++.+++|+|||.++.-++..+
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36689999999999998888655
No 365
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.96 E-value=2.5 Score=50.97 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=23.9
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
...+.||.+++|+|||..+-+++..+...
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~ 230 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEG 230 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 45689999999999999988888776543
No 366
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=88.95 E-value=0.6 Score=49.85 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=28.9
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCC-ceEEEecCcc
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLST 344 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~-~~LIv~P~~l 344 (819)
.|+..+|++++|+|||..|+++...| +.+ ||..++-..+
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eL---G~~~PF~~isgSEi 88 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKEL---GEDVPFVSISGSEI 88 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHC---TTTS-EEEEEGGGG
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHh---CCCCCeeEccccee
Confidence 56788999999999999999999887 333 8887777543
No 367
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=88.92 E-value=3.9 Score=46.11 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~---~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
|...+..|......+ +..|+.++.|+|||..|.+++..+...
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 455666666655554 346789999999999999999988654
No 368
>CHL00095 clpC Clp protease ATP binding subunit
Probab=88.91 E-value=32 Score=42.26 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHhhc--------CC---CceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 289 YQLEGLNFLRFSWS--------KQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 289 ~Q~~~v~~l~~~~~--------~~---~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
-|-+++..+..... .+ ...++.+++|+|||..|-+++..++..
T Consensus 513 GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~ 566 (821)
T CHL00095 513 GQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS 566 (821)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 47777776644332 11 135899999999999999888887643
No 369
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=88.81 E-value=1.3 Score=50.41 Aligned_cols=28 Identities=32% Similarity=0.304 Sum_probs=23.6
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHh
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~ 329 (819)
...++++|.+++|+|||..+-+++..+.
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 4567899999999999999888887764
No 370
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=88.66 E-value=0.83 Score=54.40 Aligned_cols=66 Identities=18% Similarity=0.109 Sum_probs=49.1
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-CC--CceEEEecC-cchHHHHHHHHHHc
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPL-STLRNWEREFATWA 356 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~-~~--~~~LIv~P~-~ll~qW~~e~~~~~ 356 (819)
.|.|-|.++|. ...+.+++.+..|+|||.+.+.-+.++... +. ..+|+|+.+ .....-...+....
T Consensus 2 ~Ln~~Q~~av~------~~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVE------FVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHh------CCCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 47899999987 345677788889999999999999998853 43 368999985 44445555555544
No 371
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=88.59 E-value=1.1 Score=43.81 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=39.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHc
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~ 356 (819)
.+|.+++|+|||..++.++......+ .+++++.......+..+.+..+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g-~~v~~~s~e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG-EPGLYVTLEESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC-CcEEEEECCCCHHHHHHHHHHcC
Confidence 57899999999999999888776443 58899998888888777776653
No 372
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=88.54 E-value=1 Score=51.78 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=66.0
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-----CCceEEEec-CcchHHHHHHHHHHcC
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-----ISPHLVVAP-LSTLRNWEREFATWAP 357 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~-----~~~~LIv~P-~~ll~qW~~e~~~~~p 357 (819)
..|..-|+.|...+ ....-.|+.++.|+|||.+++-++..++... .-|+||+|= ++.+.|.-.-+-..
T Consensus 377 ~ildsSq~~A~qs~----ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~~-- 450 (1025)
T KOG1807|consen 377 VILDSSQQFAKQSK----LTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYYH-- 450 (1025)
T ss_pred eeecHHHHHHHHHH----hhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHhc--
Confidence 35777899988765 4456689999999999999999998887653 239999999 58888877666532
Q ss_pred CCeEEEEecChhHHHHHHHhhhc
Q 003450 358 QMNVVMYVGTSQARNIIREYEFY 380 (819)
Q Consensus 358 ~~~v~~~~g~~~~r~~~~~~e~~ 380 (819)
+-..++..|+......++.+.++
T Consensus 451 qrpsImr~gsr~~spyLk~~n~~ 473 (1025)
T KOG1807|consen 451 QRPSIMRQGSRFFSPYLKVHNYL 473 (1025)
T ss_pred CCceEEEeccccCCHHHHHHHHH
Confidence 44556777776655555554443
No 373
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=88.49 E-value=1.5 Score=52.50 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=22.8
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
...+.||.++.|+|||..+-++...+..
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~ 233 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999988777766544
No 374
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=88.30 E-value=3.3 Score=41.72 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=23.9
Q ss_pred cceEEEecccccccCccc---HHHHHHHhc-ccCcEEEEeC
Q 003450 428 KWQCMIVDEGHRLKNKDS---KLFSSLKQY-STRHRVLLTG 464 (819)
Q Consensus 428 ~~~~lIvDEaH~~kn~~s---~~~~~l~~l-~~~~~llLTg 464 (819)
..++|+||..|.+.+... .++..+..+ .....+++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 468999999999987542 333344443 2455677666
No 375
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=88.24 E-value=1.7 Score=42.39 Aligned_cols=148 Identities=15% Similarity=0.143 Sum_probs=76.8
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHH-HHHHHHH--cCCCeEEEEecChhHHHHHHHhh
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW-EREFATW--APQMNVVMYVGTSQARNIIREYE 378 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW-~~e~~~~--~p~~~v~~~~g~~~~r~~~~~~e 378 (819)
...+..++....|.|||..|++........+. +++||==.- ..| ..|...+ .|++.+..+ |....
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~-~V~ivQFlK--g~~~~GE~~~l~~l~~v~~~~~-g~~~~-------- 87 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGK-KVGVVQFIK--GAWSTGERNLLEFGGGVEFHVM-GTGFT-------- 87 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCC-eEEEEEEec--CCCccCHHHHHhcCCCcEEEEC-CCCCc--------
Confidence 35577889999999999999998877665543 555553211 112 1222222 232222211 11000
Q ss_pred hcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccccccCc----ccHHHHHHHhc
Q 003450 379 FYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNK----DSKLFSSLKQY 454 (819)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~~kn~----~s~~~~~l~~l 454 (819)
+.. .. .. .-.-.-.+.+..-...+..-.+++||+||.=..-+. ...+...+..-
T Consensus 88 ~~~-~~--------------------~~-e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~r 145 (191)
T PRK05986 88 WET-QD--------------------RE-RDIAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNAR 145 (191)
T ss_pred ccC-CC--------------------cH-HHHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcC
Confidence 000 00 00 000000112222344555678999999998665442 34555566555
Q ss_pred ccCcEEEEeCCCCCCChhHHHhhhcccCC
Q 003450 455 STRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (819)
Q Consensus 455 ~~~~~llLTgTP~~n~~~el~~ll~~l~~ 483 (819)
+..--+.|||--....+.|+..+..-+.+
T Consensus 146 p~~~evVlTGR~~p~~Lie~ADlVTEm~~ 174 (191)
T PRK05986 146 PGMQHVVITGRGAPRELIEAADLVTEMRP 174 (191)
T ss_pred CCCCEEEEECCCCCHHHHHhCchheeccc
Confidence 55667999998655555555555444433
No 376
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=88.19 E-value=0.6 Score=45.20 Aligned_cols=35 Identities=20% Similarity=0.126 Sum_probs=24.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~ 342 (819)
.++.++|++|||...+..+..+...+ .+++++-|.
T Consensus 4 ~~i~GpM~sGKS~eLi~~~~~~~~~~-~~v~~~kp~ 38 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIRRIHRYEIAG-KKVLVFKPA 38 (176)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEEES
T ss_pred EEEECCcCChhHHHHHHHHHHHHhCC-CeEEEEEec
Confidence 36789999999998877776553332 467777775
No 377
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=88.18 E-value=4.9 Score=42.98 Aligned_cols=43 Identities=16% Similarity=0.404 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 003450 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGER 332 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~---~~~iLade~GlGKT~~~i~~l~~l~~~~ 332 (819)
|-+++..+......+ +.-++.++.|.||+..|.+++..+....
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 556666666665555 4678999999999999999999987653
No 378
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=87.90 E-value=5.1 Score=47.49 Aligned_cols=94 Identities=18% Similarity=0.219 Sum_probs=63.0
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHH----HHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEE
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDL----LEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~----L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L 681 (819)
.|||.....-.+......|.+++|.+.....+.- +.+++...|+++..++|+++..+|...++...++..+ ++
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~---Ii 342 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIH---LV 342 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCC---EE
Confidence 5788765433333334568899999988765544 4455555689999999999999999999888765444 44
Q ss_pred ecccc-ccccCCcccCCEEEEe
Q 003450 682 LSTRA-GGLGINLATADTVIIY 702 (819)
Q Consensus 682 ~st~a-~~~GinL~~a~~VI~~ 702 (819)
++|.+ ....+.+.....||+=
T Consensus 343 VgT~~ll~~~~~~~~l~lvVID 364 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLALVIID 364 (630)
T ss_pred EecHHHHhccccccccceEEEe
Confidence 44443 4445666666655543
No 379
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=87.76 E-value=6 Score=42.49 Aligned_cols=46 Identities=22% Similarity=0.376 Sum_probs=34.0
Q ss_pred CchhHHHHHHHHHHhhcCCC-ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 286 LHPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 286 L~~~Q~~~v~~l~~~~~~~~-~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
++|+|...-..+...+..-. ..|+.++.|+|||..|..++..+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 46777777666654443333 45689999999999999999988653
No 380
>PRK07952 DNA replication protein DnaC; Validated
Probab=87.75 E-value=1.8 Score=44.33 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHh---hcC-CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHH
Q 003450 288 PYQLEGLNFLRFS---WSK-QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (819)
Q Consensus 288 ~~Q~~~v~~l~~~---~~~-~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~ 354 (819)
+.|..++..+... +.. ..+.+|.+++|+|||..+.+++.++...+ .+++++ .+..|...+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g-~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG-KSVLII----TVADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC-CeEEEE----EHHHHHHHHHH
Confidence 3466566555322 222 24789999999999999999998887654 355555 34566666554
No 381
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=87.70 E-value=1 Score=45.84 Aligned_cols=40 Identities=30% Similarity=0.440 Sum_probs=26.5
Q ss_pred cceEEEecccccccCcccHHHHHHHhcccCcEEEEeCCCCCCC
Q 003450 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNN 470 (819)
Q Consensus 428 ~~~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~ 470 (819)
..+.+||||++.+- ......+........+.|-|=|.|-.
T Consensus 62 ~~~~liiDE~~~~~---~g~l~~l~~~~~~~~~~l~GDp~Q~~ 101 (234)
T PF01443_consen 62 SYDTLIIDEAQLLP---PGYLLLLLSLSPAKNVILFGDPLQIP 101 (234)
T ss_pred cCCEEEEeccccCC---hHHHHHHHhhccCcceEEEECchhcc
Confidence 47899999999873 22222344444445677779998765
No 382
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=87.49 E-value=0.25 Score=47.87 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=25.4
Q ss_pred ccccEEEchhhHHhhccc--cc--CCccceEEEecccccccC
Q 003450 405 IKFDVLLTSYEMINLDSA--SL--KPIKWQCMIVDEGHRLKN 442 (819)
Q Consensus 405 ~~~~vvi~ty~~l~~~~~--~l--~~~~~~~lIvDEaH~~kn 442 (819)
...+|||++|..+..... .+ -..+-.+|||||||++-+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 567999999998865321 11 123456899999999843
No 383
>PRK05580 primosome assembly protein PriA; Validated
Probab=87.38 E-value=4.4 Score=48.35 Aligned_cols=95 Identities=11% Similarity=0.119 Sum_probs=71.8
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhh-CCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEecc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~-~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st 684 (819)
.|||......++......|.++||.+..+.....+.+.|.. .|..+..++|+++..+|.+...+...+... +++.|
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~---IVVgT 248 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK---VVIGA 248 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC---EEEec
Confidence 68899888888877777899999999998887777777754 478899999999999998888877665433 56777
Q ss_pred ccccccCCcccCCEEEEeCC
Q 003450 685 RAGGLGINLATADTVIIYDS 704 (819)
Q Consensus 685 ~a~~~GinL~~a~~VI~~d~ 704 (819)
+..- =+.+.....||+-+-
T Consensus 249 rsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 249 RSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred cHHh-cccccCCCEEEEECC
Confidence 6432 244556777776653
No 384
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=87.25 E-value=3.6 Score=44.89 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=34.8
Q ss_pred CCchhHHHHHHHHHHhhcC---CCceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 003450 285 SLHPYQLEGLNFLRFSWSK---QTHVILADEMGLGKTIQSIAFLASLFGER 332 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~---~~~~iLade~GlGKT~~~i~~l~~l~~~~ 332 (819)
.-|+-|++.+.....-+.. ..++++.+.+|+|||.++--++..+....
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~ 70 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS 70 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh
Confidence 3678888877654333322 34689999999999999988888876543
No 385
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=87.20 E-value=7 Score=36.99 Aligned_cols=59 Identities=19% Similarity=0.189 Sum_probs=37.4
Q ss_pred ccccCCccceEEEecccccccC----cccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhc
Q 003450 421 SASLKPIKWQCMIVDEGHRLKN----KDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH 479 (819)
Q Consensus 421 ~~~l~~~~~~~lIvDEaH~~kn----~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~ 479 (819)
...+..-.+|+||+||.=..-+ +...+...+..-+...-+.|||--.+..+.|+..+..
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~VT 150 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLVT 150 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCceee
Confidence 3444556899999999866533 2345556665555666799999865555544444433
No 386
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.05 E-value=0.62 Score=50.97 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=39.2
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~ 355 (819)
..++.+|+++.|.|||..+.+++... ...+.-|.|.+|...|..|.+++
T Consensus 185 p~rglLLfGPpgtGKtmL~~aiAsE~----~atff~iSassLtsK~~Ge~eK~ 233 (428)
T KOG0740|consen 185 PVRGLLLFGPPGTGKTMLAKAIATES----GATFFNISASSLTSKYVGESEKL 233 (428)
T ss_pred ccchhheecCCCCchHHHHHHHHhhh----cceEeeccHHHhhhhccChHHHH
Confidence 45678999999999999888877754 23678889999999998877554
No 387
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=86.90 E-value=2.6 Score=44.38 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=28.1
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcC-CCCceEEEec
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP 341 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~-~~~~~LIv~P 341 (819)
.++..++.+++|+|||.++..++.++... +..++.+|.-
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~ 232 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITT 232 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 34556789999999999998888877654 3345555554
No 388
>PRK05973 replicative DNA helicase; Provisional
Probab=86.86 E-value=1.7 Score=44.19 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=42.2
Q ss_pred HhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHH
Q 003450 299 FSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (819)
Q Consensus 299 ~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~ 355 (819)
-.+..+.-.+|++.+|+|||..++-++...... ..+++++.-...-.+-.+.+..+
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes~~~i~~R~~s~ 114 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYTEQDVRDRLRAL 114 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCCHHHHHHHHHHc
Confidence 345667778999999999999999988877544 34888888766666666666554
No 389
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=86.76 E-value=1.2 Score=42.74 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=38.7
Q ss_pred ccccCCccceEEEecccccccCc----ccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhccc
Q 003450 421 SASLKPIKWQCMIVDEGHRLKNK----DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFL 481 (819)
Q Consensus 421 ~~~l~~~~~~~lIvDEaH~~kn~----~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l 481 (819)
...+..-.+|+||+||.=..-+. ...+...+..-+..--+.|||.-.+..+.|+..+..-+
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~VTEm 154 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLVTEM 154 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCceeeee
Confidence 44455668999999998755332 23555556555556679999996555555544444433
No 390
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=86.72 E-value=2.3 Score=44.78 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=32.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHcCCCeEEE
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVM 363 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~p~~~v~~ 363 (819)
.++.+-.|+|||.+..=++..+..++ .++|+.+--.--.--.+++..|.-.+.+-+
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g-~~VllaA~DTFRAaAiEQL~~w~er~gv~v 197 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQG-KSVLLAAGDTFRAAAIEQLEVWGERLGVPV 197 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHCC-CeEEEEecchHHHHHHHHHHHHHHHhCCeE
Confidence 46789999999976655555555444 455555554333334445555553333333
No 391
>PRK06921 hypothetical protein; Provisional
Probab=86.70 E-value=2 Score=44.78 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=31.2
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcch
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll 345 (819)
.+.+.+|.+++|+|||..+.+++..+.......++.+....++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~ 158 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGF 158 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHH
Confidence 3567999999999999999999888876522355555543333
No 392
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=86.48 E-value=7.3 Score=42.48 Aligned_cols=42 Identities=19% Similarity=0.157 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~~---~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
|.+.++.+......++ ..|+.++.|+|||..+.+++..+...
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 19 QEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4444444544444443 45889999999999998888887643
No 393
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=86.42 E-value=2.2 Score=51.05 Aligned_cols=65 Identities=20% Similarity=0.139 Sum_probs=49.4
Q ss_pred CchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-CC--CceEEEecC-cchHHHHHHHHHHc
Q 003450 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPL-STLRNWEREFATWA 356 (819)
Q Consensus 286 L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~-~~--~~~LIv~P~-~ll~qW~~e~~~~~ 356 (819)
|.|-|.+++. ...+.+++.+..|+|||.+.+.-+.++... +. ..+|+|+.+ ....+-++.+.+..
T Consensus 2 Ln~~Q~~av~------~~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVE------YVTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHh------CCCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 7889999987 446788888999999999999999888853 33 367877764 55566666676554
No 394
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=86.35 E-value=2.1 Score=52.62 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=28.3
Q ss_pred HHHHHHHHhh--cCCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 292 EGLNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 292 ~~v~~l~~~~--~~~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
+-+..+...+ ....+.||.++.|.|||..+-+++..+..
T Consensus 180 ~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 180 EEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3455555433 34568999999999999998888777644
No 395
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=86.26 E-value=2.8 Score=47.40 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~---~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
|...+..|...+..+ +.-++.++=|+|||.+|=.++..+...
T Consensus 21 Qe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~ 65 (515)
T COG2812 21 QEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCE 65 (515)
T ss_pred cHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCC
Confidence 445555555555544 456899999999999988888887554
No 396
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=86.02 E-value=1.6 Score=46.54 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=32.4
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHh
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~ 329 (819)
.+.+.+.|.+. |......+++.|++++||+|||...-+++..+.
T Consensus 126 ~g~~~~~~~~~---L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 126 SKIMTEAQASV---IRSAIDSRLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred cCCCCHHHHHH---HHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 34566666654 444456678899999999999988877776664
No 397
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=85.96 E-value=1.9 Score=44.95 Aligned_cols=49 Identities=14% Similarity=0.009 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 003450 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (819)
Q Consensus 288 ~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~ 340 (819)
|.....+..+......+...+|.+++|+|||..|.++...+ ..|++.+.
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l----g~~~~~i~ 53 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR----DRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh----CCCEEEEe
Confidence 45556666666666888999999999999999988877643 23666654
No 398
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=85.87 E-value=4.2 Score=39.17 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=25.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P 341 (819)
.++.++.|+|||..+..++..+...+....+|-++
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 46889999999999988888776654323334444
No 399
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=85.78 E-value=1.3 Score=46.67 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=30.7
Q ss_pred HhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCC-ceEEEecC
Q 003450 299 FSWSKQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL 342 (819)
Q Consensus 299 ~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~-~~LIv~P~ 342 (819)
..-..|++.++++++|+|||..|+++...| +.+ ||.-+.-.
T Consensus 60 ~gk~aGrgiLi~GppgTGKTAlA~gIa~eL---G~dvPF~~isgs 101 (450)
T COG1224 60 QGKMAGRGILIVGPPGTGKTALAMGIAREL---GEDVPFVAISGS 101 (450)
T ss_pred hCcccccEEEEECCCCCcHHHHHHHHHHHh---CCCCCceeeccc
Confidence 333567788999999999999999999887 433 66544443
No 400
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=85.57 E-value=0.57 Score=57.84 Aligned_cols=49 Identities=41% Similarity=1.155 Sum_probs=42.7
Q ss_pred cccccccccCCCC--eEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 50 KDDSCQACGESEN--LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 50 ~~~~C~~c~~~~~--~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
....|..|.++.. ++.|+.|...+|..|..|++...+.++|.|+.|...
T Consensus 154 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred cchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 3466888987764 349999999999999999999999999999999864
No 401
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=85.54 E-value=1.8 Score=52.25 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=50.9
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-C--CCceEEEecC-cchHHHHHHHHHHcC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-R--ISPHLVVAPL-STLRNWEREFATWAP 357 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~-~--~~~~LIv~P~-~ll~qW~~e~~~~~p 357 (819)
.|.|-|.++|. ...+.+++.+..|+|||.+.+.-+.+|... + +..+|+|+.+ .....-++.+.+..+
T Consensus 4 ~Ln~~Q~~av~------~~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 4 GLNDKQREAVA------APPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred ccCHHHHHHHc------CCCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 48899999986 456778888899999999999999998864 3 3478999885 454556666666543
No 402
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=85.49 E-value=1.7 Score=46.06 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=27.7
Q ss_pred HHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 295 NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 295 ~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
.+|......+++.+++++||+|||..+-+++..+..
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 345555567889999999999999888777766544
No 403
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=85.38 E-value=0.56 Score=56.67 Aligned_cols=25 Identities=48% Similarity=1.136 Sum_probs=23.1
Q ss_pred hhhhhhccCCCcccccccChHHHHH
Q 003450 131 KQYLVKWKGLSYLHCTWVPEKEFLK 155 (819)
Q Consensus 131 ~eylVKw~~~s~~h~~W~~~~~l~~ 155 (819)
.+|||||+|.+|-.|||+.++.+..
T Consensus 300 ~eYLvKW~~LpY~e~TWE~~~~I~~ 324 (1373)
T KOG0384|consen 300 PEYLVKWRGLPYEECTWEDAEDIAK 324 (1373)
T ss_pred ceeEEEecCCCcccccccchhhhhh
Confidence 7999999999999999999988754
No 404
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=85.23 E-value=1.7 Score=45.00 Aligned_cols=111 Identities=12% Similarity=0.160 Sum_probs=61.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHH-HhcCCCCceEEEecC-cch-----HHHHHHHHHHc----CCCeEEEEecChhHHHHHH
Q 003450 307 VILADEMGLGKTIQSIAFLAS-LFGERISPHLVVAPL-STL-----RNWEREFATWA----PQMNVVMYVGTSQARNIIR 375 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~-l~~~~~~~~LIv~P~-~ll-----~qW~~e~~~~~----p~~~v~~~~g~~~~r~~~~ 375 (819)
+++.++||+||+--.-.++.. +..--+..+.+|+|. .++ .-|..++..-. |+-.+
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi-------------- 155 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTI-------------- 155 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCee--------------
Confidence 678999999999533333222 122233478999995 444 34877765411 11001
Q ss_pred HhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccc-----------cCCccceEEEecccccccCcc
Q 003450 376 EYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS-----------LKPIKWQCMIVDEGHRLKNKD 444 (819)
Q Consensus 376 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~-----------l~~~~~~~lIvDEaH~~kn~~ 444 (819)
........++.|-+||+-+..+... -.+...-+||+|||=.-....
T Consensus 156 -----------------------~P~t~t~~P~Fv~msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDECMe~Lg~~ 212 (369)
T PF02456_consen 156 -----------------------VPQTGTFRPKFVEMSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDECMEKLGSH 212 (369)
T ss_pred -----------------------ccccccccccceeecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHHHHHhcCC
Confidence 1122345677888999888654221 011234589999995543434
Q ss_pred cHHHHHHHhc
Q 003450 445 SKLFSSLKQY 454 (819)
Q Consensus 445 s~~~~~l~~l 454 (819)
....+....+
T Consensus 213 ~~is~fFHAl 222 (369)
T PF02456_consen 213 KSISKFFHAL 222 (369)
T ss_pred CChhHHHhcC
Confidence 4444444444
No 405
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=85.22 E-value=1.2 Score=45.46 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=27.9
Q ss_pred HHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 295 NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 295 ~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
..++..-..|+..+||++.|+|||..|+++...|
T Consensus 55 dlik~KkmaGravLlaGppgtGKTAlAlaisqEL 88 (456)
T KOG1942|consen 55 DLIKSKKMAGRAVLLAGPPGTGKTALALAISQEL 88 (456)
T ss_pred HHHHhhhccCcEEEEecCCCCchhHHHHHHHHHh
Confidence 4444455678889999999999999999998887
No 406
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=85.21 E-value=2 Score=51.82 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=49.5
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-CC--CceEEEecC-cchHHHHHHHHHHc
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPL-STLRNWEREFATWA 356 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~-~~--~~~LIv~P~-~ll~qW~~e~~~~~ 356 (819)
.|.|-|.++|. ...+.+++.+..|+|||.+.+.-+.+|... +. ..+|+|+-+ .....-++.+.+..
T Consensus 9 ~Ln~~Q~~av~------~~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVA------APLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHh------CCCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 48999999987 445678888889999999999999998753 33 368999885 44455555555554
No 407
>PRK08939 primosomal protein DnaI; Reviewed
Probab=85.16 E-value=1.6 Score=46.44 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=28.4
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEE
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv 339 (819)
.++|.+|.+++|+|||..+.|++..+...+. +++++
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~-~v~~~ 190 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGV-SSTLL 190 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CEEEE
Confidence 4568899999999999999999998875543 44444
No 408
>PRK10867 signal recognition particle protein; Provisional
Probab=85.15 E-value=4.6 Score=45.02 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=26.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcC-CCCceEEEec
Q 003450 306 HVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP 341 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l~~~-~~~~~LIv~P 341 (819)
-.++++..|+|||.++.-++.++... +.+..||-+.
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 35789999999999998888888766 4334444444
No 409
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=85.08 E-value=5.9 Score=51.00 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=41.2
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH---hcCCCCceEEEecCcch
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL---FGERISPHLVVAPLSTL 345 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l---~~~~~~~~LIv~P~~ll 345 (819)
.|.+-|.+++..+.. ...+-++|.+..|+|||.+.-+++..+ .......++.++|+.-.
T Consensus 835 ~Lt~~Qr~Av~~iLt--s~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkA 896 (1623)
T PRK14712 835 KLTSGQRAATRMILE--TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRA 896 (1623)
T ss_pred ccCHHHHHHHHHHHh--CCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHH
Confidence 699999999986532 245678999999999998865544433 22223367888997544
No 410
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=85.03 E-value=2.1 Score=48.27 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=39.8
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~ 355 (819)
..+.-.+|.+++|+|||..++.++..+...+ +++|.|.......|......++
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g-~kvlYvs~EEs~~qi~~ra~rl 144 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQ-MKVLYVSGEESLQQIKMRAIRL 144 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcC-CcEEEEECcCCHHHHHHHHHHc
Confidence 4455678999999999999998887775543 4788888877677766555443
No 411
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=84.93 E-value=6 Score=47.33 Aligned_cols=94 Identities=16% Similarity=0.191 Sum_probs=66.1
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHH----HHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEE
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHML----DLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~l----d~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L 681 (819)
.|||.....-.+-.....|.+++|.+.....+ +.+.+++...|+++..++|+++..+|.+.+....++... ++
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~---Iv 368 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEAD---IV 368 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCC---EE
Confidence 68887754444333445688999999886654 455566666789999999999999999999998765444 45
Q ss_pred eccc-cccccCCcccCCEEEEe
Q 003450 682 LSTR-AGGLGINLATADTVIIY 702 (819)
Q Consensus 682 ~st~-a~~~GinL~~a~~VI~~ 702 (819)
+.|. .....+.+.....||+=
T Consensus 369 VgT~~ll~~~v~~~~l~lvVID 390 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVIID 390 (681)
T ss_pred EchHHHhcccchhcccceEEEe
Confidence 5554 34556667666666653
No 412
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.82 E-value=13 Score=43.77 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~---~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
|...+..|......+ +..|+.++.|.|||..+..++..+..
T Consensus 22 q~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c 65 (614)
T PRK14971 22 QEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 (614)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 444555554544444 23689999999999988888887753
No 413
>PRK12377 putative replication protein; Provisional
Probab=84.79 E-value=2.4 Score=43.58 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=31.9
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWE 349 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~ 349 (819)
..+.+|.+++|+|||..+.|++..+...+. .++++.-..++....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~-~v~~i~~~~l~~~l~ 145 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGR-SVIVVTVPDVMSRLH 145 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CeEEEEHHHHHHHHH
Confidence 357899999999999999999998876542 444444344444443
No 414
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=84.65 E-value=1.3 Score=44.87 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=41.7
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHc
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~ 356 (819)
..+.-.+|.+++|+|||+.++.++.........++++|+-.....+..+.+..+.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFG 71 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTT
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcC
Confidence 4566688999999999999999887765541248888988888888888888765
No 415
>PRK10865 protein disaggregation chaperone; Provisional
Probab=84.50 E-value=66 Score=39.66 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 306 HVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
..++.+++|+|||..|-++...+..
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhc
Confidence 4689999999999999888877654
No 416
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=84.39 E-value=3.6 Score=44.54 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=41.4
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHc
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~ 356 (819)
.-.++.+++|.||+..-+-++..+...+ ++|.|+-..-+.||+-...+..
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~--~vLYVsGEES~~QiklRA~RL~ 143 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG--KVLYVSGEESLQQIKLRADRLG 143 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC--cEEEEeCCcCHHHHHHHHHHhC
Confidence 3467899999999987777777776555 9999999999999998888875
No 417
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=84.35 E-value=1.6 Score=49.77 Aligned_cols=45 Identities=16% Similarity=0.031 Sum_probs=38.5
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHH
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLAS 327 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~ 327 (819)
+.++++.|.+-++-+++....|+=+|+-.+||+|||+..|.....
T Consensus 13 Py~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaalt 57 (821)
T KOG1133|consen 13 PYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALT 57 (821)
T ss_pred CCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHH
Confidence 367899999999999999999999999999999999886554443
No 418
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=84.25 E-value=5.2 Score=43.46 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=32.3
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec-C---cchHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-L---STLRNWEREFA 353 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P-~---~ll~qW~~e~~ 353 (819)
++-.++++++|+|||.++..++..+...+. ++.+|+- + ..+.||..-..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~-~V~lItaDtyR~gAveQLk~yae 258 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNR-TVGFITTDTFRSGAVEQFQGYAD 258 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEeCCccCccHHHHHHHHhh
Confidence 455678999999999998888777655543 4444443 2 23567765433
No 419
>PHA00012 I assembly protein
Probab=84.13 E-value=3 Score=43.89 Aligned_cols=26 Identities=15% Similarity=0.380 Sum_probs=21.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCC
Q 003450 308 ILADEMGLGKTIQSIAFLASLFGERI 333 (819)
Q Consensus 308 iLade~GlGKT~~~i~~l~~l~~~~~ 333 (819)
++.+.+|+|||+.|++-+...+.++.
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~Gr 30 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVKGC 30 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHcCC
Confidence 67889999999999987777666653
No 420
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=84.09 E-value=1.7 Score=45.46 Aligned_cols=38 Identities=26% Similarity=0.348 Sum_probs=28.8
Q ss_pred HHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 294 LNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 294 v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
..+|......+++.+++++||+|||.+.-+++..+-..
T Consensus 117 ~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 117 AEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp HHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred HHHHhhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 34455555668899999999999999888877765444
No 421
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=84.05 E-value=9.5 Score=42.36 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=25.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 003450 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P 341 (819)
-..+++..|+|||.++.-++.++...+. ++++|+-
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~-kV~lV~~ 136 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGF-KPCLVCA 136 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEcC
Confidence 3568999999999998888877765544 5555544
No 422
>COG3857 AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair]
Probab=83.91 E-value=1.1e+02 Score=37.66 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=46.5
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHcC---CCeEEEEecChhHHHHHH
Q 003450 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAP---QMNVVMYVGTSQARNIIR 375 (819)
Q Consensus 308 iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~p---~~~v~~~~g~~~~r~~~~ 375 (819)
+|.+.+|+|||-..+--+......+ +|+..|||.+.--+-.+++....+ .+.+.++.=..-+.....
T Consensus 5 ~lyg~~gtgkT~~l~~e~~~~~~~g-kpviyIvP~q~sFe~E~~~L~~~~~~g~~~i~V~~F~rLa~~i~~ 74 (1108)
T COG3857 5 LLYGRAGTGKTEILTEEIQEELEKG-KPVIYIVPSQMSFEKEKEILERLRQGGSFRIQVTRFKRLAYYILQ 74 (1108)
T ss_pred eehhhccccHHHHHHHHHHHHHHcC-CcEEEEcccchhHHHHHHHHhCcccCCeeeEEEEEHHHHHHHHHH
Confidence 6788999999976666666655555 799999999988888888866542 244555544444443333
No 423
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=83.89 E-value=7.5 Score=43.88 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=24.1
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHh-cCCCCceEEEe
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLF-GERISPHLVVA 340 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~-~~~~~~~LIv~ 340 (819)
++-..|.+++|.|||.++.-++..+. ..+..++.+|.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~ 293 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLT 293 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 33456899999999988877776653 33333444433
No 424
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=83.62 E-value=2.9 Score=43.49 Aligned_cols=56 Identities=21% Similarity=0.225 Sum_probs=44.7
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHcC
Q 003450 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAP 357 (819)
Q Consensus 301 ~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~p 357 (819)
+..++..++.+++|+|||+-++-|+...... ..|++.|+-...-..-.+.+.++..
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e~~~~l~~~~~~~g~ 75 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTEESPEELLENARSFGW 75 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEecCCHHHHHHHHHHcCC
Confidence 3567788999999999999999999988776 3489999987777666666666543
No 425
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=83.46 E-value=8.3 Score=51.59 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=41.0
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH---HHHhcCCCCceEEEecCcch
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL---ASLFGERISPHLVVAPLSTL 345 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l---~~l~~~~~~~~LIv~P~~ll 345 (819)
..|.+-|.+++..+.. ..++-++|.+..|+|||.+..+++ ..+.......++.++|+.-.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~--~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~A 1080 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIIS--TKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEA 1080 (1960)
T ss_pred CCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHH
Confidence 4699999999986522 234567889999999998774433 33333333477888897444
No 426
>PRK09087 hypothetical protein; Validated
Probab=83.33 E-value=6.7 Score=39.73 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=25.7
Q ss_pred eEEEecccccccCcccHHHHHHHhcc-cCcEEEEeCC
Q 003450 430 QCMIVDEGHRLKNKDSKLFSSLKQYS-TRHRVLLTGT 465 (819)
Q Consensus 430 ~~lIvDEaH~~kn~~s~~~~~l~~l~-~~~~llLTgT 465 (819)
++|++|+.|.+......++..+..+. ....+++|++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~ 125 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSR 125 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECC
Confidence 47999999988655555666666554 3567888887
No 427
>PRK14873 primosome assembly protein PriA; Provisional
Probab=83.14 E-value=5.7 Score=46.93 Aligned_cols=94 Identities=18% Similarity=0.109 Sum_probs=72.4
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhC-C-CeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEec
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-K-WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS 683 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~-g-~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~s 683 (819)
.|||.+...+++......|+.+||...-+.....+...|... | ..+..+++.++..+|.+...+..++... ++|.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~---IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR---VVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc---EEEE
Confidence 589999999999999999999999999988888888877643 4 6799999999999999998888665443 6777
Q ss_pred cccccccCCcccCCEEEEeC
Q 003450 684 TRAGGLGINLATADTVIIYD 703 (819)
Q Consensus 684 t~a~~~GinL~~a~~VI~~d 703 (819)
|+++- =.=+.....||+-|
T Consensus 247 tRSAv-FaP~~~LgLIIvdE 265 (665)
T PRK14873 247 TRSAV-FAPVEDLGLVAIWD 265 (665)
T ss_pred cceeE-EeccCCCCEEEEEc
Confidence 77642 12233344555543
No 428
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=83.12 E-value=5.4 Score=40.98 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=20.1
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
..|.++++.++.|.|||..+-.++..+
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l 40 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAI 40 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 578889999999999996554444333
No 429
>CHL00206 ycf2 Ycf2; Provisional
Probab=83.06 E-value=2.2 Score=54.89 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=32.7
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW 348 (819)
...+|++|.+++|+|||+.|=|++... .-|++-|....++..|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es----~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS----YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc----CCceEEEEHHHHhhcc
Confidence 456789999999999999887777643 2377777777777665
No 430
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=83.02 E-value=11 Score=40.25 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=25.7
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~ 340 (819)
+.-..+.++.|+|||.++..++..+...+ +.++++.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g-~~V~Li~ 149 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQG-KKVLLAA 149 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcC-CeEEEEe
Confidence 33456889999999999888877776443 4555554
No 431
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=82.99 E-value=3.6 Score=42.08 Aligned_cols=64 Identities=23% Similarity=0.258 Sum_probs=44.3
Q ss_pred HHHHHHHH-hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHc
Q 003450 292 EGLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (819)
Q Consensus 292 ~~v~~l~~-~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~ 356 (819)
.+++-+.. .+..+...++++++|+|||..++-++...... ..++++|+-.....+-.+.+..+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEEHPVQVRRNMAQFG 72 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeCCHHHHHHHHHHhC
Confidence 34444332 33456678899999999999999888876533 348888887766666666665543
No 432
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=82.91 E-value=4.6 Score=45.51 Aligned_cols=59 Identities=20% Similarity=0.124 Sum_probs=41.5
Q ss_pred CCCchhHHHHHHHHHHhhcCCCc------eEEEcCCCCcHHHHHHHHHHHH--hcC-CCCceEEEecC
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTH------VILADEMGLGKTIQSIAFLASL--FGE-RISPHLVVAPL 342 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~------~iLade~GlGKT~~~i~~l~~l--~~~-~~~~~LIv~P~ 342 (819)
..|.|||...+.-|.-++..+.+ ++|..+=|-|||..+.+++.+. ... ....++|++|+
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s 127 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPS 127 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEecc
Confidence 57999999999877544444433 5788899999997766555443 222 23388999996
No 433
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=82.89 E-value=5.5 Score=44.41 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=26.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhc-CCCCceEEEec
Q 003450 306 HVILADEMGLGKTIQSIAFLASLFG-ERISPHLVVAP 341 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l~~-~~~~~~LIv~P 341 (819)
-.++++..|+|||.++.-++.++.. .+....||-+.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 4678999999999999888888753 34334444444
No 434
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=82.75 E-value=8 Score=50.52 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=42.3
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHh---cCCCCceEEEecCcch
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF---GERISPHLVVAPLSTL 345 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~---~~~~~~~LIv~P~~ll 345 (819)
..|.+-|.+++..+.. ...+-.+|.+..|+|||.+.-+++..+. ......++.++|+.-.
T Consensus 966 ~~Lt~~Q~~Av~~il~--s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrA 1028 (1747)
T PRK13709 966 EGLTSGQRAATRMILE--STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRA 1028 (1747)
T ss_pred CCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHH
Confidence 4689999999987632 2346788999999999987655555442 2222367888997544
No 435
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=82.54 E-value=2.1 Score=46.59 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=22.5
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
-.|++++|.++.|.|||..+-.+...+...
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 467788888999999997776655555443
No 436
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=82.17 E-value=0.39 Score=48.01 Aligned_cols=46 Identities=15% Similarity=0.427 Sum_probs=34.6
Q ss_pred ccccccccCC---------CCeEecCCCCccccccCcCCCCC---CCCCCCcccCccC
Q 003450 51 DDSCQACGES---------ENLMSCDTCTYAYHAKCLVPPLK---APPSGSWRCPECV 96 (819)
Q Consensus 51 ~~~C~~c~~~---------~~~~~C~~C~~~~H~~c~~p~~~---~~~~~~w~C~~c~ 96 (819)
...|..|-++ ..+++|..|.-++|.+|+.-+.. .+....|.|..|.
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~ 315 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCE 315 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccH
Confidence 3468888654 23999999999999999965432 2345789999997
No 437
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=82.13 E-value=6.2 Score=43.18 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=22.7
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
..|..++|.++.|+|||..+-.+...+..+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 567889999999999998766655554433
No 438
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=82.02 E-value=1.2e+02 Score=36.20 Aligned_cols=44 Identities=27% Similarity=0.409 Sum_probs=31.8
Q ss_pred hhhcCchHHHHHHHHHH-HHhc---------CceEEEEecchhHHHHHHHHHhh
Q 003450 603 LLESSGKLQLLDKMMVK-LKEQ---------GHRVLIYSQFQHMLDLLEDYLTF 646 (819)
Q Consensus 603 l~~~s~Kl~~l~~ll~~-l~~~---------g~kvlIFs~~~~~ld~L~~~L~~ 646 (819)
..+..+|...|.++|.+ .... ...|||-|..-.+.-.|.++|..
T Consensus 347 ~lE~~pKw~~Ltdil~~e~~~~~~~~~~~~~~~~Vlv~c~dertC~ql~d~lt~ 400 (892)
T KOG0442|consen 347 ELEECPKWEVLTDILFKEIEHEKERADRSNDQGSVLVACSDERTCAQLRDYLTL 400 (892)
T ss_pred ccccCCCcHHHHHHHHhhhhhHHHHhhhcCCCCceEEEeccchhHHHHHHHHhc
Confidence 34578899999999933 2211 23699999998888788887764
No 439
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.94 E-value=11 Score=41.38 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~---~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
|..++..+......+ +..++.++.|+|||..+-+++..+..
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 22 QSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444555554544444 36789999999999988888776644
No 440
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=81.90 E-value=12 Score=41.44 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=30.7
Q ss_pred cceEEEecccccccCcccHHHHHHHhcc-----cCcEEEEeCCCCCCChhHHHhhhcccCC
Q 003450 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYS-----TRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (819)
Q Consensus 428 ~~~~lIvDEaH~~kn~~s~~~~~l~~l~-----~~~~llLTgTP~~n~~~el~~ll~~l~~ 483 (819)
..+.++||.+=+..+. ......+..+. ....|.|+||--.+.+.++...+..+..
T Consensus 269 ~~d~VLIDTaGrsqrd-~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~ 328 (420)
T PRK14721 269 GKHMVLIDTVGMSQRD-QMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGI 328 (420)
T ss_pred CCCEEEecCCCCCcch-HHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 4578888886444322 22333333332 2345779999766666666655554433
No 441
>PHA00350 putative assembly protein
Probab=81.79 E-value=3.2 Score=45.50 Aligned_cols=18 Identities=11% Similarity=0.274 Sum_probs=15.2
Q ss_pred eEEEcCCCCcHHHHHHHH
Q 003450 307 VILADEMGLGKTIQSIAF 324 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~ 324 (819)
.++.+..|+|||..|+..
T Consensus 4 ~l~tG~pGSGKT~~aV~~ 21 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVY 21 (399)
T ss_pred EEEecCCCCchhHHHHHH
Confidence 367889999999999873
No 442
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=81.78 E-value=4 Score=41.98 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=37.3
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHc
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~ 356 (819)
++.+|.++.|+||++.|-|++-.. ...|.-|....|+..|..|-+++.
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEA----nSTFFSvSSSDLvSKWmGESEkLV 214 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEA----NSTFFSVSSSDLVSKWMGESEKLV 214 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhc----CCceEEeehHHHHHHHhccHHHHH
Confidence 578899999999999877766542 246677777889999998877754
No 443
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=81.72 E-value=13 Score=39.97 Aligned_cols=48 Identities=15% Similarity=0.064 Sum_probs=29.5
Q ss_pred HhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHH
Q 003450 299 FSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN 347 (819)
Q Consensus 299 ~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~q 347 (819)
........++|.+|+|+||+..|-++-.. -....+|++.|--..+-..
T Consensus 17 ~~a~~~~pVLI~GE~GtGK~~lAr~iH~~-s~r~~~pfv~vnc~~~~~~ 64 (329)
T TIGR02974 17 RLAPLDRPVLIIGERGTGKELIAARLHYL-SKRWQGPLVKLNCAALSEN 64 (329)
T ss_pred HHhCCCCCEEEECCCCChHHHHHHHHHHh-cCccCCCeEEEeCCCCChH
Confidence 33466778999999999999876543322 1222347666644444333
No 444
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=81.52 E-value=71 Score=39.31 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=20.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 307 VILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
.++.+++|+|||..|-++...++.
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhC
Confidence 589999999999999888877754
No 445
>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain. It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.
Probab=81.46 E-value=0.48 Score=36.27 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=21.8
Q ss_pred chhhhHhhhhcCCcceeeEeeecccc
Q 003450 192 TTVDRILACRGEDDEKEYLVKYKELS 217 (819)
Q Consensus 192 ~~~eril~~~~~~~~~~~lvKw~~l~ 217 (819)
+.+|+|++..+..|+..|||||++.+
T Consensus 3 l~~E~Ivg~~d~~G~l~~likwk~~~ 28 (58)
T PF01393_consen 3 LEWEKIVGATDTNGELMFLIKWKNSG 28 (58)
T ss_dssp -TEEEEEEEEECTSSEEEEEEETTSS
T ss_pred CChHHHheeecCCCcEEEEEEECCCC
Confidence 46789998887789999999999965
No 446
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=81.28 E-value=3.2 Score=44.41 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=30.1
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
+.+.+.|.+. |......+++.+++++||+|||..+-+++..+
T Consensus 131 g~~~~~~~~~---L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 131 GIMTAAQREA---IIAAVRAHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCCCHHHHHH---HHHHHHcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4455556554 44445678899999999999997776666654
No 447
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=81.19 E-value=4.5 Score=41.12 Aligned_cols=53 Identities=11% Similarity=0.163 Sum_probs=38.6
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~ 355 (819)
..+.-.+|.++.|+|||..++.++..+...+ .+++.++......+-.+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~~e~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVSTQLTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHHh
Confidence 4566788999999999999988888776544 4777787765555555555443
No 448
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=81.06 E-value=1.5 Score=42.26 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=19.8
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC
Q 003450 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (819)
Q Consensus 308 iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~ 342 (819)
+|.++=|-|||...-.++..+...+..+++|.+|.
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~ 35 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPS 35 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCC
Confidence 46678899999765555555555555689999996
No 449
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=80.93 E-value=6.7 Score=41.60 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=23.2
Q ss_pred eEEEecccccccCcccHHHHHHHhcccCcEEEEeCCCC
Q 003450 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPL 467 (819)
Q Consensus 430 ~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~ 467 (819)
-++++||.||+. .+++-..+-.+...-++++-||.-
T Consensus 224 TilFiDEiHRFN--ksQQD~fLP~VE~G~I~lIGATTE 259 (554)
T KOG2028|consen 224 TILFIDEIHRFN--KSQQDTFLPHVENGDITLIGATTE 259 (554)
T ss_pred eEEEeHHhhhhh--hhhhhcccceeccCceEEEecccC
Confidence 368999999993 233333444445666777888853
No 450
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=80.66 E-value=0.62 Score=38.37 Aligned_cols=43 Identities=28% Similarity=0.707 Sum_probs=29.3
Q ss_pred cccccCCCC---eEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 54 CQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 54 C~~c~~~~~---~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
|..|.-+|+ ++.+. |.-.||+.|+..-+... ...=.||-|+..
T Consensus 35 Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~ 80 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQ-SSKGQCPMCRQP 80 (85)
T ss_pred CCCccCCCCCCceeecc-CccHHHHHHHHHHHccc-cCCCCCCCcCCe
Confidence 444554554 55555 99999999997766653 233479999864
No 451
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=80.53 E-value=3.4 Score=43.00 Aligned_cols=43 Identities=26% Similarity=0.251 Sum_probs=31.3
Q ss_pred CchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 286 L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
+.+.|.+.+.++.. ..++.+++++++|+|||.+.-+++..+..
T Consensus 64 ~~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 64 LKPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 66778887765521 23445789999999999988888777643
No 452
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=80.39 E-value=13 Score=49.73 Aligned_cols=62 Identities=19% Similarity=0.104 Sum_probs=44.7
Q ss_pred CCCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchH
Q 003450 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (819)
Q Consensus 282 ~~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~ 346 (819)
.+..|.+-|.+++..+.. ...+-.+|.+..|+|||.+.-+++..+ +.....+++++|+.-..
T Consensus 426 ~~~~Ls~~Q~~Av~~il~--s~~~v~ii~G~aGTGKTt~l~~l~~~~-~~~G~~V~~lAPTgrAA 487 (1960)
T TIGR02760 426 SEFALSPSNKDAVSTLFT--STKRFIIINGFGGTGSTEIAQLLLHLA-SEQGYEIQIITAGSLSA 487 (1960)
T ss_pred ccCCCCHHHHHHHHHHHh--CCCCeEEEEECCCCCHHHHHHHHHHHH-HhcCCeEEEEeCCHHHH
Confidence 346799999999986532 235678899999999997766655544 33335899999986543
No 453
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=80.34 E-value=4.8 Score=40.69 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=41.5
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHc
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~ 356 (819)
..+.-.++++++|+|||..++.++...... ..+++++.......+-.+.+..+.
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEEREERILGYAKSKG 67 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHHHHHHHHcC
Confidence 345567889999999999999888776554 358899988877777777776654
No 454
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=80.34 E-value=8.4 Score=45.88 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=24.3
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHh-cCCCCceEEEec
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLF-GERISPHLVVAP 341 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~-~~~~~~~LIv~P 341 (819)
++-..|.+++|.|||.++.-++..+. ..+.+.+.+|.-
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~ 223 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTT 223 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecC
Confidence 33456899999999988766665553 333335544443
No 455
>CHL00176 ftsH cell division protein; Validated
Probab=80.33 E-value=5.6 Score=46.82 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=20.8
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
.++++|.+++|+|||..|-+++...
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999887776543
No 456
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=80.09 E-value=0.35 Score=57.42 Aligned_cols=52 Identities=21% Similarity=0.278 Sum_probs=42.9
Q ss_pred cccccccccCCCCeEecCC-CCccccc-cCcCCC--CCCCCCCCcccCccCCCCcc
Q 003450 50 KDDSCQACGESENLMSCDT-CTYAYHA-KCLVPP--LKAPPSGSWRCPECVSPLND 101 (819)
Q Consensus 50 ~~~~C~~c~~~~~~~~C~~-C~~~~H~-~c~~p~--~~~~~~~~w~C~~c~~~~~~ 101 (819)
....|.+|+..+.+++|+. |+..||+ .|++-. -...+.+-|+|++|....+.
T Consensus 427 i~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rqM~ 482 (1414)
T KOG1473|consen 427 ISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQMG 482 (1414)
T ss_pred eeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHhcc
Confidence 4566999999999999997 9999999 999733 35688999999999865443
No 457
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=80.05 E-value=3.3 Score=44.58 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=27.6
Q ss_pred HHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 294 LNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 294 v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
..||......+++.+++++||+|||...-+++..+
T Consensus 150 ~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 150 KEFLEHAVISKKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhC
Confidence 45565666788999999999999998776666655
No 458
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=79.98 E-value=3.6 Score=49.79 Aligned_cols=42 Identities=24% Similarity=0.292 Sum_probs=30.4
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW 348 (819)
..++.+|.+++|+|||..|-+++..+ ..+++.|-+..++..|
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~----~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATES----GANFIAVRGPEILSKW 527 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc----CCCEEEEehHHHhhcc
Confidence 45678999999999999887776654 2367766666555544
No 459
>smart00300 ChSh Chromo Shadow Domain.
Probab=79.95 E-value=1.3 Score=34.42 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=25.0
Q ss_pred chhhhHhhhhcCCcceeeEeeecccccccccccC
Q 003450 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEY 225 (819)
Q Consensus 192 ~~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~ 225 (819)
..+|+|++..+.+|...||+||++ ++..+-+
T Consensus 7 ~~~e~Ivg~~d~~G~l~flikwk~---~~~~lVp 37 (61)
T smart00300 7 KSWEDIVGITKDDGELTFLIKWKD---DAASLVP 37 (61)
T ss_pred CCHHHHhceecCCCeEEEEEEEeC---CcEEEEE
Confidence 578999999888999999999999 4444443
No 460
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=79.66 E-value=3.6 Score=44.85 Aligned_cols=58 Identities=19% Similarity=0.137 Sum_probs=36.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHcCCCeEEEEe
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYV 365 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~p~~~v~~~~ 365 (819)
.++++=-|+|||.++.=++.++...+. ++|+|+--.--+--.++++...-...|-+|.
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk~~~-kvllVaaD~~RpAA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKKKGK-KVLLVAADTYRPAAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHHcCC-ceEEEecccCChHHHHHHHHHHHHcCCceec
Confidence 568899999999999888888877444 4455544333333344455544344444443
No 461
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=79.48 E-value=3.6 Score=47.04 Aligned_cols=64 Identities=17% Similarity=0.246 Sum_probs=48.1
Q ss_pred HHHHHHHHh-hcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHc
Q 003450 292 EGLNFLRFS-WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (819)
Q Consensus 292 ~~v~~l~~~-~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~ 356 (819)
.+++-+.-. +..+.-.+|.+++|+|||..++-++......+ .+++++.-.....|-.+...++.
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~g-e~~~y~s~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANK-ERAILFAYEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEEeeCCHHHHHHHHHHcC
Confidence 445444322 34556678999999999999999998876543 48899998888888888887764
No 462
>PRK09183 transposase/IS protein; Provisional
Probab=79.26 E-value=1.8 Score=44.86 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=28.2
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~ 340 (819)
..+.+.+|.+++|+|||..+.++...+...+ ..++++.
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G-~~v~~~~ 137 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAG-IKVRFTT 137 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEe
Confidence 6788999999999999999888866554433 2555543
No 463
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=79.23 E-value=0.47 Score=47.21 Aligned_cols=48 Identities=31% Similarity=0.656 Sum_probs=36.5
Q ss_pred cccccccccCC----------CCeEecCCCCccccccCcCCCC---CCCCCCCcccCccCC
Q 003450 50 KDDSCQACGES----------ENLMSCDTCTYAYHAKCLVPPL---KAPPSGSWRCPECVS 97 (819)
Q Consensus 50 ~~~~C~~c~~~----------~~~~~C~~C~~~~H~~c~~p~~---~~~~~~~w~C~~c~~ 97 (819)
...+|.-|-.. .+|+.|..|+++=|.+||.-.. ..+....|.|-+|+.
T Consensus 223 Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~ 283 (336)
T KOG1244|consen 223 PNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKY 283 (336)
T ss_pred CCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecce
Confidence 45678888643 3499999999999999996442 234567899999984
No 464
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=79.04 E-value=4.4 Score=44.45 Aligned_cols=61 Identities=20% Similarity=0.157 Sum_probs=46.4
Q ss_pred CCchhHHHHHHHHHHhh--cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchH
Q 003450 285 SLHPYQLEGLNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~--~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~ 346 (819)
+|.+-|..+++.+.... ..+....|.++-|+|||...-++...+.. ....+++++|+.+..
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~-~~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS-RGKKVLVTAPTGIAA 63 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc-ccceEEEecchHHHH
Confidence 47788999988885555 45667889999999999887777666544 345899999986553
No 465
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=78.93 E-value=13 Score=39.69 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~---~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
|...+..+...+..+ +-.++.++-|.|||..|.+++..+...
T Consensus 9 ~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 9 HENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred cHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 334444444444443 234799999999999999999888643
No 466
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=78.03 E-value=4.8 Score=41.15 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=36.2
Q ss_pred hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHH
Q 003450 300 SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN 347 (819)
Q Consensus 300 ~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~q 347 (819)
.+..|.-.+|++.+|+|||..++.++.........+++++.....-..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~ 56 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQ 56 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHH
Confidence 455666789999999999999998888776554458888886544433
No 467
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=77.83 E-value=7.3 Score=39.48 Aligned_cols=54 Identities=22% Similarity=0.245 Sum_probs=37.9
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHH
Q 003450 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (819)
Q Consensus 301 ~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~ 355 (819)
+..+...+|++++|+|||..+..++...... ..+++++.-.....+..+....+
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-g~~~~~is~e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD-GDPVIYVTTEESRESIIRQAAQF 70 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEEccCCHHHHHHHHHHh
Confidence 4556678899999999999998887765543 34777777765555555444443
No 468
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=77.81 E-value=16 Score=38.16 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=25.9
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P 341 (819)
+-.++.+.+|.|||.++..++..+...+ .++++|.-
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g-~~V~li~~ 108 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQG-KSVLLAAG 108 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcC-CEEEEEeC
Confidence 3456789999999999888887775544 35555553
No 469
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=77.22 E-value=5.2 Score=44.65 Aligned_cols=44 Identities=27% Similarity=0.379 Sum_probs=31.8
Q ss_pred CchhHHHHHHHHHHhhcCCCc-eEEEcCCCCcHHHHHHHHHHHHhcCC
Q 003450 286 LHPYQLEGLNFLRFSWSKQTH-VILADEMGLGKTIQSIAFLASLFGER 332 (819)
Q Consensus 286 L~~~Q~~~v~~l~~~~~~~~~-~iLade~GlGKT~~~i~~l~~l~~~~ 332 (819)
+.++|...+..+ .....| .++.++||+|||.+.-+++..+....
T Consensus 242 ~~~~~~~~~~~~---~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~ 286 (500)
T COG2804 242 MSPFQLARLLRL---LNRPQGLILVTGPTGSGKTTTLYAALSELNTPE 286 (500)
T ss_pred CCHHHHHHHHHH---HhCCCeEEEEeCCCCCCHHHHHHHHHHHhcCCC
Confidence 467777765433 344444 45799999999999999998886544
No 470
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=77.20 E-value=5.1 Score=45.81 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=47.0
Q ss_pred HHHHHHH-hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHc
Q 003450 293 GLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (819)
Q Consensus 293 ~v~~l~~-~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~ 356 (819)
+++-+.. .+..+...+|.+++|+|||+-++-|+..-..+...+.|+|+-.....++.+.+..+.
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G 73 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFG 73 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcC
Confidence 4444432 244567789999999999999999987654443358899988777788877777765
No 471
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=77.13 E-value=3.4 Score=48.64 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=35.1
Q ss_pred cEEEchhhHHhhcccccCCccceEEEecccccccCcccHHHHHHHhccc----CcEEEEeCCC
Q 003450 408 DVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYST----RHRVLLTGTP 466 (819)
Q Consensus 408 ~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~~kn~~s~~~~~l~~l~~----~~~llLTgTP 466 (819)
-++..|-+.+.+.... ..+....+|+||.|..--..-.+...+..+.. -+.+++|+|=
T Consensus 474 ~i~fctvgvllr~~e~-glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatI 535 (1282)
T KOG0921|consen 474 SIMFCTVGVLLRMMEN-GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATI 535 (1282)
T ss_pred ceeeeccchhhhhhhh-cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhccc
Confidence 3566666665543221 12345689999999875545555555555533 3558899883
No 472
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=77.06 E-value=3.5 Score=40.86 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=20.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
-.++++++|+|||.+.-+++..+...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~ 28 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKN 28 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 35789999999999887777766433
No 473
>PF12846 AAA_10: AAA-like domain
Probab=76.56 E-value=4.6 Score=42.64 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=29.1
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCc
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ 343 (819)
++++++.+.+|+|||..+..++..+...+ .+++|+=|..
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g-~~~~i~D~~g 39 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG-PRVVIFDPKG 39 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC-CCEEEEcCCc
Confidence 46789999999999988887777766555 3566665553
No 474
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=76.42 E-value=3.9 Score=49.46 Aligned_cols=66 Identities=20% Similarity=0.242 Sum_probs=48.0
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-CC--CceEEEecC-cchHHHHHHHHHHc
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPL-STLRNWEREFATWA 356 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~-~~--~~~LIv~P~-~ll~qW~~e~~~~~ 356 (819)
.|.|-|.++|. ...+.+++.+..|+|||.+.+.-+.++... +. ..+|+++-+ .....-...+.+..
T Consensus 4 ~Ln~~Q~~av~------~~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 4 HLNPEQREAVK------TTEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred ccCHHHHHHHh------CCCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 48999999987 446778888899999999999999988764 33 368888885 33334444444443
No 475
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=76.41 E-value=49 Score=37.61 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=27.8
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN 347 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~q 347 (819)
.....+++.++.|+|||..|-++-... ....+|+++|--..+-..
T Consensus 159 ~~~~~vli~Ge~GtGK~~lA~~ih~~s-~~~~~~~i~i~c~~~~~~ 203 (469)
T PRK10923 159 RSSISVLINGESGTGKELVAHALHRHS-PRAKAPFIALNMAAIPKD 203 (469)
T ss_pred ccCCeEEEEeCCCCcHHHHHHHHHhcC-CCCCCCeEeeeCCCCCHH
Confidence 556789999999999997654433321 122347666655444333
No 476
>PRK08760 replicative DNA helicase; Provisional
Probab=75.99 E-value=7.5 Score=44.22 Aligned_cols=63 Identities=11% Similarity=0.038 Sum_probs=47.1
Q ss_pred HHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHc
Q 003450 294 LNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (819)
Q Consensus 294 v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~ 356 (819)
++.+...+..+.=.||++.+|.|||..++.++.........+++++...-...++...+....
T Consensus 219 LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~~ 281 (476)
T PRK08760 219 FDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSN 281 (476)
T ss_pred HHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHhh
Confidence 333444556677789999999999999999887765333358999998888888887766543
No 477
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=75.87 E-value=6.2 Score=43.41 Aligned_cols=71 Identities=14% Similarity=-0.002 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHH-HhcCCCCceEEEecCcchHHHHHHHHHHcCCCeEEEEe
Q 003450 291 LEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLAS-LFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYV 365 (819)
Q Consensus 291 ~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~-l~~~~~~~~LIv~P~~ll~qW~~e~~~~~p~~~v~~~~ 365 (819)
...+..+..+...+.|.|+.++.|+|||..+.++..+ ....+ ..+++..++.+-............++++.
T Consensus 196 ~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG----~f~T~a~Lf~~L~~~~lg~v~~~DlLI~D 267 (449)
T TIGR02688 196 LLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILISG----GTITVAKLFYNISTRQIGLVGRWDVVAFD 267 (449)
T ss_pred HHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC----CcCcHHHHHHHHHHHHHhhhccCCEEEEE
Confidence 3333334345578899999999999999888776555 33333 55566666666554333333355566553
No 478
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.55 E-value=9.2 Score=40.98 Aligned_cols=114 Identities=15% Similarity=0.141 Sum_probs=0.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCcc
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPK 386 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~ 386 (819)
.++++=-|+|||.++.-++.++.+.+. ++.+||-..--.---++++.++....+-+|....+..
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~-K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~d--------------- 167 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKGY-KVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEAD--------------- 167 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcCC-ceeEEeecccccchHHHHHHHhHhhCCeeEecccccc---------------
Q ss_pred ccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccccccCccc---HHHHHHHhcccCcEEEE
Q 003450 387 KVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDS---KLFSSLKQYSTRHRVLL 462 (819)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~~kn~~s---~~~~~l~~l~~~~~llL 462 (819)
.-.....-.+.++.-+|++||+|=+-|.+-..+ .+......++.+.+|+.
T Consensus 168 --------------------------pv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~V 220 (483)
T KOG0780|consen 168 --------------------------PVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFV 220 (483)
T ss_pred --------------------------hHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEE
No 479
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=75.27 E-value=8.9 Score=44.24 Aligned_cols=65 Identities=20% Similarity=0.297 Sum_probs=48.5
Q ss_pred HHHHHHHH-hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHc
Q 003450 292 EGLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (819)
Q Consensus 292 ~~v~~l~~-~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~ 356 (819)
.+++-+.. .+..+.-.+|++++|+|||+.++.++.........++|+|.=.....+-.+.+..+.
T Consensus 18 ~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g 83 (509)
T PRK09302 18 EGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFG 83 (509)
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcC
Confidence 35555532 345667788999999999999999887665553458899988888888777777664
No 480
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=74.99 E-value=4.9 Score=43.65 Aligned_cols=29 Identities=10% Similarity=0.222 Sum_probs=22.8
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
..++..++++++|+|||.+.-+++..+..
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 34567789999999999888777766643
No 481
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=74.87 E-value=6.1 Score=37.12 Aligned_cols=126 Identities=16% Similarity=0.193 Sum_probs=66.2
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCC
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKN 384 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~p~~~v~~~~g~~~~r~~~~~~e~~~~~~ 384 (819)
....+.+.+|+|||..+.-++..+.+.+.+-.=|+||..- +=.+-. ++.++-+....... +.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR------~gGkR~-GF~Ivdl~tg~~~~--la--------- 67 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR------EGGKRI-GFKIVDLATGEEGI--LA--------- 67 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee------cCCeEe-eeEEEEccCCceEE--EE---------
Confidence 4678999999999988877777777665443344555321 000111 44554443221110 00
Q ss_pred ccccccccCCccccccccccccccEEEchhhHHhhc--ccccCCccceEEEecccccccCcccHHHHHHHhc-ccCcEEE
Q 003450 385 PKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQY-STRHRVL 461 (819)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~lIvDEaH~~kn~~s~~~~~l~~l-~~~~~ll 461 (819)
....+.....++.|.+-..+.+... ...+. .-|++||||.-.+-..+.+...++... ++...++
T Consensus 68 -----------~~~~~~~rvGkY~V~v~~le~i~~~al~rA~~--~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpli 134 (179)
T COG1618 68 -----------RVGFSRPRVGKYGVNVEGLEEIAIPALRRALE--EADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLI 134 (179)
T ss_pred -----------EcCCCCcccceEEeeHHHHHHHhHHHHHHHhh--cCCEEEEecccchhhccHHHHHHHHHHhcCCCcEE
Confidence 0001222345566665554422211 11111 258999999988866666666676664 4444433
No 482
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=74.67 E-value=2.2 Score=42.28 Aligned_cols=39 Identities=26% Similarity=0.844 Sum_probs=30.0
Q ss_pred cccccccccCCC--------CeEecCCCCccccccCcCCCCCCCCCCCcccCccCC
Q 003450 50 KDDSCQACGESE--------NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 50 ~~~~C~~c~~~~--------~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
...+|.+|++++ ....|..|...||..|... . .||.|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---~------~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---K------SCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---C------CCCCcHh
Confidence 345788888653 3789999999999999952 1 2999974
No 483
>PRK04328 hypothetical protein; Provisional
Probab=74.55 E-value=7.9 Score=39.89 Aligned_cols=53 Identities=25% Similarity=0.265 Sum_probs=38.3
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~ 355 (819)
..+.-.+|.+++|+|||..++.++......+ .+.++|.-.....+-.+.+..+
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~g-e~~lyis~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMG-EPGVYVALEEHPVQVRRNMRQF 73 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcC-CcEEEEEeeCCHHHHHHHHHHc
Confidence 4566678899999999999999888755443 4777777655555555555554
No 484
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=74.54 E-value=3.5 Score=45.57 Aligned_cols=50 Identities=22% Similarity=0.390 Sum_probs=40.7
Q ss_pred ccccccccccCCCCeEecCCCCccccccCcCCCCCCCC-CCCcccCccCCC
Q 003450 49 AKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPP-SGSWRCPECVSP 98 (819)
Q Consensus 49 ~~~~~C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~~~~-~~~w~C~~c~~~ 98 (819)
..+.+|..|.-+|..+.|+.|-+.||..|..|--.... ..-|-|+-|..-
T Consensus 58 N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s~ 108 (588)
T KOG3612|consen 58 NIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYSF 108 (588)
T ss_pred CCCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCccccc
Confidence 45788999999999999999999999999987644332 345999988753
No 485
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=74.40 E-value=4 Score=46.82 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=20.6
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLAS 327 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~ 327 (819)
..++++|.+++|+|||..+-+++..
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999988777654
No 486
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=74.22 E-value=4.8 Score=40.79 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=30.8
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~ 342 (819)
++++.+.+.||+|||.++-.++..+......+++|+=|.
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~ 61 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPH 61 (229)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 467778889999999999999999874333477777775
No 487
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=73.85 E-value=0.33 Score=38.90 Aligned_cols=45 Identities=24% Similarity=0.491 Sum_probs=18.2
Q ss_pred ccccccCC----CC--eEecC--CCCccccccCcCCCCCCCC-------CCCcccCccCC
Q 003450 53 SCQACGES----EN--LMSCD--TCTYAYHAKCLVPPLKAPP-------SGSWRCPECVS 97 (819)
Q Consensus 53 ~C~~c~~~----~~--~~~C~--~C~~~~H~~c~~p~~~~~~-------~~~w~C~~c~~ 97 (819)
.|.+|... +. .+.|+ .|...||..||.--+...+ --.+.||.|..
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~ 63 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSS 63 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-S
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCC
Confidence 48888742 22 68898 8999999999954332211 12357999985
No 488
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=73.83 E-value=7.7 Score=40.46 Aligned_cols=53 Identities=17% Similarity=0.133 Sum_probs=38.4
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHH
Q 003450 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (819)
Q Consensus 301 ~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~ 353 (819)
+..+.-++|++++|+|||..++.++..+......+++++.-.....+....+.
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~ 79 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLL 79 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHH
Confidence 45677789999999999999998887765443357888877555555544443
No 489
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=73.78 E-value=26 Score=36.85 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=33.3
Q ss_pred CCchhHHHHHHHHHHhhcCCC--ce-EEEcCCCCcHHHHHHHHHHHHhcCC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQT--HV-ILADEMGLGKTIQSIAFLASLFGER 332 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~--~~-iLade~GlGKT~~~i~~l~~l~~~~ 332 (819)
.|...|-.++..+......++ .+ ++.+ |.||+..|..++..+....
T Consensus 2 ~l~~~q~~~~~~L~~~~~~~rl~hAyLf~G--~~G~~~~A~~~A~~llC~~ 50 (290)
T PRK07276 2 DLKQKQPKVFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQ 50 (290)
T ss_pred cHHHHHHHHHHHHHHHHHcCCcceeeeeeC--CccHHHHHHHHHHHHcCCC
Confidence 356678888888877766664 34 4555 5789999999998887543
No 490
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=73.68 E-value=6.7 Score=46.07 Aligned_cols=53 Identities=25% Similarity=0.350 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC
Q 003450 289 YQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (819)
Q Consensus 289 ~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~ 342 (819)
-|.+++..+......++++++.+++|+|||..+-+++..+....... +++.|+
T Consensus 22 G~~~a~~~l~~a~~~~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~-~~~~~n 74 (608)
T TIGR00764 22 GQEEAVEIIKKAAKQKRNVLLIGEPGVGKSMLAKAMAELLPDEELED-ILVYPN 74 (608)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHcCchhhee-EEEEeC
Confidence 46667777777777888999999999999999888887664332123 334554
No 491
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=73.46 E-value=4.8 Score=46.26 Aligned_cols=67 Identities=19% Similarity=0.083 Sum_probs=48.0
Q ss_pred CCchhHHHHHHHHHHhh--------cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHH
Q 003450 285 SLHPYQLEGLNFLRFSW--------SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~--------~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~ 355 (819)
..++...+++.|..... ...++.||+++.|+|||+.|-++...+ ..+++-|-...++..|.-|..+-
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~----~~~fi~v~~~~l~sk~vGesek~ 323 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES----RSRFISVKGSELLSKWVGESEKN 323 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC----CCeEEEeeCHHHhccccchHHHH
Confidence 35556677777763322 345588999999999999988877643 23666666669999999888763
No 492
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=73.26 E-value=31 Score=40.94 Aligned_cols=59 Identities=24% Similarity=0.193 Sum_probs=39.0
Q ss_pred CCchhHHHHHHHHHHhhcCCC-ceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEecCc
Q 003450 285 SLHPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLS 343 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~-~~iLade~GlGKT~~~i~~l~~l~~~~-~~~~LIv~P~~ 343 (819)
.+..-|.+++.-+...+..+. -.+|.++=|=|||..+-..+..+.+.. ...++|.+|+.
T Consensus 211 ~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~ 271 (758)
T COG1444 211 CLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTP 271 (758)
T ss_pred hcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCH
Confidence 466678888776666666555 567899999999976542222222222 34889999963
No 493
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=73.22 E-value=6.9 Score=42.79 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=23.9
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
..++..+++++||+|||.+.-+++.++...
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~al~~~i~~~ 176 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAASIYQHCGET 176 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 355678899999999999888877776543
No 494
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=73.06 E-value=23 Score=40.43 Aligned_cols=54 Identities=22% Similarity=0.201 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHhhcCC------CceEEEcCCCCcHHHHHHHHHHHH-hcCC-CC-ceEEEecC
Q 003450 288 PYQLEGLNFLRFSWSKQ------THVILADEMGLGKTIQSIAFLASL-FGER-IS-PHLVVAPL 342 (819)
Q Consensus 288 ~~Q~~~v~~l~~~~~~~------~~~iLade~GlGKT~~~i~~l~~l-~~~~-~~-~~LIv~P~ 342 (819)
|+|.-.+..+. .|... +.++|.-+=|-|||..+.++..+. .-.+ .+ -++++++.
T Consensus 1 PwQ~fi~~~i~-G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~ 63 (477)
T PF03354_consen 1 PWQKFILRSIF-GWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANT 63 (477)
T ss_pred CcHHHHHHHHh-ceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCC
Confidence 67887766553 23221 346788899999998776655443 2222 22 46666664
No 495
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=73.03 E-value=13 Score=35.64 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=32.7
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHH
Q 003450 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (819)
Q Consensus 293 ~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW 348 (819)
.++.+.........++|.+|+|+||+..|=++-... ....+|++.|--..+-.++
T Consensus 11 ~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s-~r~~~pfi~vnc~~~~~~~ 65 (168)
T PF00158_consen 11 LREQAKRAASSDLPVLITGETGTGKELLARAIHNNS-PRKNGPFISVNCAALPEEL 65 (168)
T ss_dssp HHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS-TTTTS-EEEEETTTS-HHH
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh-hcccCCeEEEehhhhhcch
Confidence 334444445667889999999999998765443311 1223488777776665444
No 496
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=72.95 E-value=4.9 Score=39.31 Aligned_cols=43 Identities=26% Similarity=0.344 Sum_probs=30.8
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
.+.+-+.|.+.+.++ ...+...++++++|+|||...-+++..+
T Consensus 7 ~g~~~~~~~~~l~~~---v~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 7 QGTFSPLQAAYLWLA---VEARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred cCCCCHHHHHHHHHH---HhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 355666777765543 5678899999999999997765555443
No 497
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=72.87 E-value=3.8 Score=44.26 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=26.7
Q ss_pred HHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 295 NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 295 ~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
.+|......+++.+++++||+|||...-+++..+
T Consensus 153 ~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 153 AFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred HHHHHHHHcCCeEEEECCCCccHHHHHHHHHccc
Confidence 4555566788899999999999998777766554
No 498
>PRK05748 replicative DNA helicase; Provisional
Probab=72.86 E-value=9.8 Score=43.06 Aligned_cols=62 Identities=10% Similarity=0.056 Sum_probs=45.2
Q ss_pred HHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHH
Q 003450 292 EGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (819)
Q Consensus 292 ~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~ 353 (819)
.+++.+...+..+.-.+|++.+|.|||.-++.++.........+++++...-.-.+....+.
T Consensus 191 ~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~l 252 (448)
T PRK05748 191 TDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRML 252 (448)
T ss_pred HHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHH
Confidence 34444444556677789999999999999999888765333458889888777777666554
No 499
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=72.56 E-value=1.2 Score=33.49 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=20.9
Q ss_pred hhhHhhhhcCC-cceeeEeeecccccccccccC
Q 003450 194 VDRILACRGED-DEKEYLVKYKELSYDECYWEY 225 (819)
Q Consensus 194 ~eril~~~~~~-~~~~~lvKw~~l~y~~~TWE~ 225 (819)
+++|++....+ |+..||+||++ ++..+-+
T Consensus 2 ~~~I~gat~~~~g~l~fl~kwk~---~~~~lVp 31 (54)
T cd00034 2 VKPISGASKSDDGELTFLAKWKD---GQASLVP 31 (54)
T ss_pred ceEEEEEEEcCCCeEEEEEEEeC---CeEEEEE
Confidence 56777766555 89999999999 4444443
No 500
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=72.48 E-value=8.2 Score=39.06 Aligned_cols=38 Identities=16% Similarity=0.047 Sum_probs=26.7
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~ 340 (819)
..+...+|.++.|+|||..+.++.......+ .+++++.
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~-~~~~~i~ 77 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGG-RNARYLD 77 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEe
Confidence 3456789999999999998888777664432 2444443
Done!