Query 003450
Match_columns 819
No_of_seqs 563 out of 3706
Neff 9.2
Searched_HMMs 29240
Date Tue Mar 26 01:37:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 6E-100 2E-104 914.7 39.3 635 99-761 37-709 (800)
2 1z3i_X Similar to RAD54-like; 100.0 3.2E-72 1.1E-76 657.7 34.8 457 284-760 54-552 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 1E-67 3.4E-72 606.9 34.3 438 278-760 31-477 (500)
4 3dmq_A RNA polymerase-associat 100.0 1.6E-49 5.6E-54 483.5 23.4 420 284-754 152-633 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 1.3E-44 4.4E-49 413.6 28.5 425 284-754 8-493 (494)
6 2fwr_A DNA repair protein RAD2 100.0 6E-42 2.1E-46 389.8 16.2 376 283-752 91-470 (472)
7 1z5z_A Helicase of the SNF2/RA 100.0 4.3E-41 1.5E-45 349.8 20.2 233 516-760 13-248 (271)
8 4a2p_A RIG-I, retinoic acid in 100.0 4.4E-37 1.5E-41 357.6 27.1 429 284-762 6-533 (556)
9 4a2w_A RIG-I, retinoic acid in 100.0 1.7E-37 5.8E-42 377.6 23.1 407 283-761 246-773 (936)
10 4a2q_A RIG-I, retinoic acid in 100.0 4.8E-37 1.7E-41 370.1 25.9 408 283-762 246-774 (797)
11 3tbk_A RIG-I helicase domain; 100.0 1.8E-36 6.2E-41 352.3 28.9 437 284-761 3-531 (555)
12 3hgt_A HDA1 complex subunit 3; 100.0 4.7E-35 1.6E-39 302.1 20.9 212 528-747 20-248 (328)
13 2oca_A DAR protein, ATP-depend 100.0 1.2E-34 4.3E-39 332.8 26.1 346 284-743 112-465 (510)
14 4gl2_A Interferon-induced heli 100.0 2.1E-34 7.3E-39 344.0 25.1 423 284-755 6-538 (699)
15 2ykg_A Probable ATP-dependent 100.0 6.1E-34 2.1E-38 339.9 26.4 402 284-740 12-520 (696)
16 3h1t_A Type I site-specific re 100.0 6.9E-33 2.4E-37 323.6 25.0 351 283-733 176-558 (590)
17 1xti_A Probable ATP-dependent 100.0 8.3E-32 2.8E-36 298.6 28.6 327 285-748 30-368 (391)
18 1hv8_A Putative ATP-dependent 100.0 3.4E-31 1.2E-35 290.8 24.8 310 285-737 28-346 (367)
19 1s2m_A Putative ATP-dependent 100.0 7.2E-31 2.5E-35 292.0 25.9 313 285-736 43-365 (400)
20 2j0s_A ATP-dependent RNA helic 100.0 8.2E-31 2.8E-35 292.5 24.6 316 285-737 59-384 (410)
21 2z0m_A 337AA long hypothetical 100.0 2.1E-30 7.3E-35 281.0 23.3 311 285-746 16-334 (337)
22 2db3_A ATP-dependent RNA helic 100.0 7E-30 2.4E-34 286.2 25.0 312 285-735 78-406 (434)
23 3eiq_A Eukaryotic initiation f 100.0 2.1E-30 7E-35 289.7 20.1 316 285-736 62-387 (414)
24 3pey_A ATP-dependent RNA helic 100.0 1.1E-29 3.8E-34 281.7 24.4 308 284-728 26-350 (395)
25 2i4i_A ATP-dependent RNA helic 100.0 7E-30 2.4E-34 285.7 22.1 316 284-736 36-383 (417)
26 1fuu_A Yeast initiation factor 100.0 1.8E-30 6.3E-35 288.0 14.8 315 284-736 42-366 (394)
27 3oiy_A Reverse gyrase helicase 100.0 1.2E-28 4.2E-33 275.2 26.0 314 284-751 20-376 (414)
28 3fht_A ATP-dependent RNA helic 100.0 2.7E-28 9.3E-33 272.2 28.6 327 284-749 46-391 (412)
29 1oyw_A RECQ helicase, ATP-depe 100.0 2.3E-28 7.8E-33 279.2 26.2 305 284-729 24-338 (523)
30 2v1x_A ATP-dependent DNA helic 100.0 8.9E-28 3.1E-32 277.0 26.0 311 284-730 43-370 (591)
31 3sqw_A ATP-dependent RNA helic 99.9 1.5E-26 5.1E-31 269.1 26.5 324 285-736 43-398 (579)
32 2eyq_A TRCF, transcription-rep 99.9 1.5E-26 5.2E-31 285.1 26.7 308 284-735 602-921 (1151)
33 3i5x_A ATP-dependent RNA helic 99.9 5E-26 1.7E-30 264.5 28.2 332 285-746 94-457 (563)
34 3fho_A ATP-dependent RNA helic 99.9 1E-27 3.4E-32 273.9 11.6 304 285-730 141-466 (508)
35 2xgj_A ATP-dependent RNA helic 99.9 1.1E-25 3.7E-30 273.4 28.6 356 283-747 84-510 (1010)
36 3fmp_B ATP-dependent RNA helic 99.9 7.7E-27 2.6E-31 265.7 14.1 309 284-728 113-440 (479)
37 1gm5_A RECG; helicase, replica 99.9 7.2E-27 2.5E-31 274.8 13.4 308 284-729 367-692 (780)
38 3l9o_A ATP-dependent RNA helic 99.9 1.3E-24 4.4E-29 266.3 24.6 361 284-748 183-609 (1108)
39 4a4z_A Antiviral helicase SKI2 99.9 4.4E-24 1.5E-28 259.4 25.1 391 270-744 24-500 (997)
40 2va8_A SSO2462, SKI2-type heli 99.9 1.7E-23 5.8E-28 249.7 25.4 327 285-737 30-409 (715)
41 2p6r_A Afuhel308 helicase; pro 99.9 2.1E-24 7.3E-29 256.6 17.4 320 285-740 25-392 (702)
42 2zj8_A DNA helicase, putative 99.9 2.3E-24 7.9E-29 257.1 15.8 319 285-740 23-391 (720)
43 4ddu_A Reverse gyrase; topoiso 99.9 2.7E-23 9.3E-28 254.5 24.5 274 284-706 77-388 (1104)
44 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 1.3E-22 4.4E-27 244.8 20.7 340 284-734 270-707 (1038)
45 1gku_B Reverse gyrase, TOP-RG; 99.9 1.1E-21 3.6E-26 240.7 20.0 273 283-705 55-352 (1054)
46 1tf5_A Preprotein translocase 99.8 2.6E-20 8.7E-25 214.7 20.5 117 606-727 414-538 (844)
47 2h1e_A Chromo domain protein 1 99.8 1.4E-22 4.9E-27 191.9 -0.4 139 98-241 11-176 (177)
48 2v6i_A RNA helicase; membrane, 99.8 5.1E-21 1.8E-25 213.3 11.6 95 623-725 170-281 (431)
49 2b2y_A CHD-1, chromodomain-hel 99.8 2.3E-22 8E-27 192.3 0.3 143 97-242 11-185 (187)
50 1yks_A Genome polyprotein [con 99.8 4.3E-20 1.5E-24 206.2 13.8 98 622-727 175-292 (440)
51 2jlq_A Serine protease subunit 99.8 2.7E-20 9.1E-25 208.9 11.9 95 623-725 187-301 (451)
52 2fsf_A Preprotein translocase 99.8 1.6E-20 5.5E-25 215.6 9.9 118 606-728 423-577 (853)
53 1nkt_A Preprotein translocase 99.8 7.3E-19 2.5E-23 202.1 22.6 117 607-728 443-611 (922)
54 2wv9_A Flavivirin protease NS2 99.8 4.3E-20 1.5E-24 214.8 11.4 98 622-727 408-526 (673)
55 2z83_A Helicase/nucleoside tri 99.8 4.8E-20 1.6E-24 207.2 11.2 105 623-736 189-313 (459)
56 2whx_A Serine protease/ntpase/ 99.8 1.3E-19 4.5E-24 209.4 12.5 104 622-734 353-476 (618)
57 3o8b_A HCV NS3 protease/helica 99.8 8.9E-20 3.1E-24 208.7 8.0 260 302-737 230-515 (666)
58 1rif_A DAR protein, DNA helica 99.8 4.7E-19 1.6E-23 186.4 11.2 163 284-483 112-278 (282)
59 4f92_B U5 small nuclear ribonu 99.8 2.8E-17 9.6E-22 208.5 27.7 320 285-736 926-1308(1724)
60 4f92_B U5 small nuclear ribonu 99.8 3.5E-17 1.2E-21 207.7 27.6 325 284-739 78-476 (1724)
61 1t5i_A C_terminal domain of A 99.8 3.6E-18 1.2E-22 165.1 14.0 118 606-728 15-132 (172)
62 2hjv_A ATP-dependent RNA helic 99.8 2.8E-18 9.6E-23 164.5 12.2 133 606-747 19-151 (163)
63 2jgn_A DBX, DDX3, ATP-dependen 99.8 1.1E-18 3.8E-23 170.7 9.1 126 605-736 28-153 (185)
64 1c4o_A DNA nucleotide excision 99.8 2.2E-16 7.4E-21 184.5 30.1 123 609-737 424-551 (664)
65 3rc3_A ATP-dependent RNA helic 99.8 4.8E-18 1.6E-22 196.9 15.5 108 626-735 322-444 (677)
66 2xau_A PRE-mRNA-splicing facto 99.7 5.3E-18 1.8E-22 201.1 15.4 113 623-738 302-445 (773)
67 2fz4_A DNA repair protein RAD2 99.7 9.9E-18 3.4E-22 170.9 15.1 144 279-470 87-232 (237)
68 3jux_A Protein translocase sub 99.7 9.8E-17 3.4E-21 180.4 21.7 118 606-728 456-581 (822)
69 2p6n_A ATP-dependent RNA helic 99.7 5E-18 1.7E-22 166.7 9.6 123 606-736 39-161 (191)
70 1fuk_A Eukaryotic initiation f 99.7 1.8E-17 6.3E-22 159.2 12.1 123 609-738 17-139 (165)
71 2d7d_A Uvrabc system protein B 99.7 2E-15 6.9E-20 176.2 30.7 121 611-737 432-557 (661)
72 2rb4_A ATP-dependent RNA helic 99.7 1.1E-16 3.7E-21 155.3 13.4 123 608-737 20-148 (175)
73 3eaq_A Heat resistant RNA depe 99.7 2.6E-16 8.8E-21 157.5 13.5 124 606-736 15-138 (212)
74 2yjt_D ATP-dependent RNA helic 99.5 3.8E-18 1.3E-22 164.8 0.0 118 607-729 15-132 (170)
75 2gxq_A Heat resistant RNA depe 99.7 7.6E-16 2.6E-20 153.9 15.7 152 285-466 23-185 (207)
76 1t6n_A Probable ATP-dependent 99.7 1.1E-15 3.6E-20 154.4 16.6 160 285-474 36-207 (220)
77 2oxc_A Probable ATP-dependent 99.6 2.2E-15 7.7E-20 153.1 15.9 151 285-466 46-208 (230)
78 3b6e_A Interferon-induced heli 99.6 3.8E-16 1.3E-20 157.1 9.8 153 283-465 31-216 (216)
79 1vec_A ATP-dependent RNA helic 99.6 4.4E-15 1.5E-19 148.2 16.4 152 285-466 25-187 (206)
80 2pl3_A Probable ATP-dependent 99.6 3.6E-15 1.2E-19 152.3 15.0 151 285-466 47-212 (236)
81 1q0u_A Bstdead; DEAD protein, 99.6 2.6E-15 8.8E-20 151.5 13.3 153 284-466 25-191 (219)
82 1wrb_A DJVLGB; RNA helicase, D 99.6 1.2E-14 4E-19 150.2 18.0 167 270-466 24-219 (253)
83 3i32_A Heat resistant RNA depe 99.6 3.1E-15 1.1E-19 156.8 13.3 124 606-736 12-135 (300)
84 1qde_A EIF4A, translation init 99.6 6.6E-15 2.3E-19 149.0 15.0 151 285-466 36-196 (224)
85 3ber_A Probable ATP-dependent 99.6 8.1E-15 2.8E-19 150.7 14.4 152 285-466 65-227 (249)
86 3bor_A Human initiation factor 99.6 9.9E-15 3.4E-19 149.1 13.9 153 285-466 52-214 (237)
87 3iuy_A Probable ATP-dependent 99.6 3.7E-14 1.3E-18 143.9 15.9 152 285-466 42-208 (228)
88 3fe2_A Probable ATP-dependent 99.5 1.5E-13 5.1E-18 140.8 14.9 152 285-466 51-217 (242)
89 3dkp_A Probable ATP-dependent 99.5 6.6E-14 2.2E-18 143.8 12.2 153 285-466 51-220 (245)
90 1fp0_A KAP-1 corepressor; PHD 99.5 1.4E-14 5E-19 118.0 5.7 51 48-98 22-72 (88)
91 3ly5_A ATP-dependent RNA helic 99.5 9.4E-14 3.2E-18 143.9 13.3 152 285-466 76-242 (262)
92 2ipc_A Preprotein translocase 99.5 1.1E-12 3.7E-17 150.6 22.0 143 283-475 77-236 (997)
93 2ee1_A Chromodomain helicase-D 99.5 8.8E-15 3E-19 111.9 2.6 57 185-241 5-63 (64)
94 1mm2_A MI2-beta; PHD, zinc fin 99.5 2.7E-14 9.3E-19 109.9 5.2 52 48-99 6-57 (61)
95 2lri_C Autoimmune regulator; Z 99.5 2.7E-14 9.1E-19 111.1 4.3 50 49-98 10-59 (66)
96 2vl7_A XPD; helicase, unknown 99.4 4E-12 1.4E-16 145.5 21.4 79 283-367 5-84 (540)
97 2epb_A Chromodomain-helicase-D 99.4 3.6E-14 1.2E-18 111.2 2.5 56 185-242 5-66 (68)
98 2yql_A PHD finger protein 21A; 99.4 6.4E-14 2.2E-18 106.1 3.5 50 48-97 6-55 (56)
99 2puy_A PHD finger protein 21A; 99.4 3.1E-14 1.1E-18 109.6 1.5 50 49-98 3-52 (60)
100 1xwh_A Autoimmune regulator; P 99.4 6.8E-14 2.3E-18 109.8 3.4 51 48-98 5-55 (66)
101 2l5u_A Chromodomain-helicase-D 99.4 1.1E-13 3.9E-18 106.4 3.2 50 48-97 8-57 (61)
102 3fmo_B ATP-dependent RNA helic 99.4 4.5E-12 1.5E-16 133.8 14.1 150 284-466 113-277 (300)
103 1f62_A Transcription factor WS 99.3 9.2E-13 3.1E-17 97.9 3.3 46 53-98 2-50 (51)
104 3u5n_A E3 ubiquitin-protein li 99.3 2.2E-12 7.7E-17 127.2 5.0 52 47-98 3-54 (207)
105 2e6r_A Jumonji/ARID domain-con 99.2 1.9E-12 6.5E-17 108.5 3.0 49 49-97 14-65 (92)
106 3o36_A Transcription intermedi 99.2 4.3E-12 1.5E-16 122.9 5.5 51 49-99 2-52 (184)
107 1wev_A Riken cDNA 1110020M19; 99.2 9.5E-13 3.3E-17 109.4 0.2 52 50-101 15-75 (88)
108 2e6s_A E3 ubiquitin-protein li 99.2 1.4E-11 4.9E-16 98.9 5.1 46 52-97 27-76 (77)
109 3asl_A E3 ubiquitin-protein li 99.2 1.1E-11 3.7E-16 98.0 4.0 45 53-97 20-68 (70)
110 2yt5_A Metal-response element- 99.2 5.5E-12 1.9E-16 99.5 2.3 51 48-98 3-61 (66)
111 2ro1_A Transcription intermedi 99.2 1.6E-11 5.3E-16 118.6 4.6 48 51-98 2-49 (189)
112 2ku3_A Bromodomain-containing 99.1 1.4E-11 4.8E-16 97.3 2.0 48 48-97 13-65 (71)
113 2l43_A N-teminal domain from h 99.1 1.7E-11 5.9E-16 101.6 2.6 47 50-98 24-75 (88)
114 3shb_A E3 ubiquitin-protein li 99.1 3.8E-11 1.3E-15 96.2 4.4 45 53-97 28-76 (77)
115 4gne_A Histone-lysine N-methyl 99.0 1.3E-10 4.4E-15 99.3 4.0 65 47-113 11-77 (107)
116 3ask_A E3 ubiquitin-protein li 99.0 1.2E-10 4.2E-15 112.6 4.1 47 51-97 174-224 (226)
117 4a15_A XPD helicase, ATP-depen 99.0 1E-09 3.6E-14 126.9 12.7 85 285-369 3-90 (620)
118 3v43_A Histone acetyltransfera 99.0 3.5E-10 1.2E-14 99.2 4.9 48 50-97 60-111 (112)
119 2lbm_A Transcriptional regulat 98.9 1.4E-10 5E-15 103.9 1.5 51 47-97 59-116 (142)
120 2k16_A Transcription initiatio 98.9 1.7E-10 5.9E-15 93.4 1.4 51 48-98 15-68 (75)
121 3llm_A ATP-dependent RNA helic 98.9 1.2E-09 4E-14 111.1 7.7 150 285-467 61-219 (235)
122 2kwj_A Zinc finger protein DPF 98.9 4E-10 1.4E-14 99.1 3.4 48 50-97 57-107 (114)
123 3crv_A XPD/RAD3 related DNA he 98.9 4.5E-09 1.5E-13 120.6 11.8 81 284-368 2-85 (551)
124 2dnt_A Chromodomain protein, Y 98.9 8E-10 2.7E-14 89.5 3.3 55 190-244 12-67 (78)
125 2rsn_A Chromo domain-containin 98.9 4.5E-10 1.5E-14 89.7 1.3 53 190-242 20-73 (75)
126 1q3l_A Heterochromatin protein 98.8 3.4E-10 1.1E-14 88.4 0.1 52 190-242 15-66 (69)
127 3f2u_A Chromobox protein homol 98.8 3.1E-10 1.1E-14 85.2 -0.3 51 192-243 3-53 (55)
128 2ysm_A Myeloid/lymphoid or mix 98.8 1.3E-09 4.6E-14 95.7 3.1 49 50-98 53-104 (111)
129 3mts_A Histone-lysine N-methyl 98.8 1.1E-09 3.7E-14 84.5 1.4 50 193-243 2-51 (64)
130 1wen_A Inhibitor of growth fam 98.8 4.7E-09 1.6E-13 82.9 4.7 46 50-98 15-65 (71)
131 1g6z_A CLR4 protein; transfera 98.8 2.1E-09 7.2E-14 85.1 2.4 53 192-244 9-63 (70)
132 3lwe_A M-phase phosphoprotein 98.8 7.8E-10 2.7E-14 85.2 -0.5 54 192-245 5-58 (62)
133 1weu_A Inhibitor of growth fam 98.7 1.4E-08 4.8E-13 83.7 6.9 47 49-98 34-85 (91)
134 2dnv_A Chromobox protein homol 98.7 1.6E-09 5.5E-14 84.0 1.0 49 192-241 11-59 (64)
135 3fdt_A Chromobox protein homol 98.7 8.8E-10 3E-14 83.9 -0.7 50 192-242 4-53 (59)
136 3c6w_A P28ING5, inhibitor of g 98.7 2.8E-09 9.6E-14 80.9 2.0 46 49-97 7-57 (59)
137 3i91_A Chromobox protein homol 98.7 1.3E-09 4.4E-14 81.5 0.1 49 192-241 4-52 (54)
138 1ap0_A Modifier protein 1; chr 98.7 2.2E-09 7.5E-14 85.6 1.5 50 192-242 14-63 (73)
139 2vnf_A ING 4, P29ING4, inhibit 98.7 3.3E-09 1.1E-13 81.0 1.9 46 49-97 8-58 (60)
140 2k1b_A Chromobox protein homol 98.7 2.7E-09 9.4E-14 84.2 1.5 49 192-241 22-70 (73)
141 3ql9_A Transcriptional regulat 98.7 1E-09 3.5E-14 96.5 -1.2 52 47-98 53-111 (129)
142 2g6q_A Inhibitor of growth pro 98.7 5E-09 1.7E-13 80.3 2.1 46 49-97 9-59 (62)
143 1pfb_A Polycomb protein; chrom 98.7 1.5E-09 5.1E-14 81.5 -0.9 49 192-241 4-52 (55)
144 1pdq_A Polycomb protein; methy 98.7 1.7E-09 5.7E-14 85.1 -0.8 49 192-241 21-69 (72)
145 3h91_A Chromobox protein homol 98.7 2.1E-09 7.1E-14 80.3 -0.3 49 192-241 4-52 (54)
146 2d9u_A Chromobox protein homol 98.7 4E-09 1.4E-13 84.3 1.3 51 192-243 11-61 (74)
147 2ysm_A Myeloid/lymphoid or mix 98.6 1.8E-08 6.1E-13 88.5 4.9 49 48-96 4-55 (111)
148 1x3p_A Cpsrp43; chromo-2 domai 98.6 3E-09 1E-13 78.9 -0.2 45 193-241 2-48 (54)
149 4hae_A CDY-like 2, chromodomai 98.6 4E-10 1.4E-14 91.3 -5.6 53 188-240 20-73 (81)
150 2jmi_A Protein YNG1, ING1 homo 98.6 1.6E-08 5.5E-13 83.2 3.6 47 48-97 23-75 (90)
151 2kvm_A Chromobox protein homol 98.6 8.6E-09 3E-13 82.5 1.8 52 192-244 14-65 (74)
152 2lv9_A Histone-lysine N-methyl 98.6 2.7E-08 9.1E-13 84.5 4.2 45 54-99 33-77 (98)
153 3g7l_A Chromo domain-containin 98.5 1E-08 3.4E-13 78.6 0.3 49 192-241 8-57 (61)
154 2rso_A Chromatin-associated pr 98.5 3.1E-08 1.1E-12 82.5 2.7 52 192-243 31-85 (92)
155 2b2y_C CHD-1, chromodomain-hel 98.4 7.3E-08 2.5E-12 82.0 2.7 75 99-176 13-100 (115)
156 1x4i_A Inhibitor of growth pro 98.2 5.1E-07 1.7E-11 71.0 1.7 45 50-97 5-54 (70)
157 2dnv_A Chromobox protein homol 98.1 3.3E-07 1.1E-11 70.9 0.2 52 99-174 10-61 (64)
158 1wil_A KIAA1045 protein; ring 98.1 5.9E-07 2E-11 70.3 1.3 48 50-97 14-75 (89)
159 3o70_A PHD finger protein 13; 98.1 1.4E-06 4.8E-11 68.1 3.4 47 49-97 17-66 (68)
160 3mts_A Histone-lysine N-methyl 98.1 3.2E-07 1.1E-11 70.7 -0.6 39 100-154 1-39 (64)
161 2epb_A Chromodomain-helicase-D 98.1 1E-06 3.4E-11 68.9 1.6 55 100-173 12-66 (68)
162 2d9u_A Chromobox protein homol 98.0 6.1E-07 2.1E-11 71.6 0.2 52 99-174 10-61 (74)
163 2kwj_A Zinc finger protein DPF 98.0 6E-07 2.1E-11 78.8 0.1 45 52-96 2-59 (114)
164 3h91_A Chromobox protein homol 98.0 3.8E-07 1.3E-11 68.0 -1.3 50 100-173 4-53 (54)
165 3f2u_A Chromobox protein homol 98.0 4.1E-07 1.4E-11 68.1 -1.3 50 100-173 3-52 (55)
166 1q3l_A Heterochromatin protein 98.0 4.3E-07 1.5E-11 70.8 -1.3 51 99-173 16-66 (69)
167 3i91_A Chromobox protein homol 98.0 4.7E-07 1.6E-11 67.5 -1.1 49 100-172 4-52 (54)
168 2k1b_A Chromobox protein homol 98.0 6.1E-07 2.1E-11 70.8 -0.6 50 100-173 22-71 (73)
169 1pfb_A Polycomb protein; chrom 98.0 4.5E-07 1.6E-11 67.9 -1.4 50 100-173 4-53 (55)
170 1we9_A PHD finger family prote 98.0 2.6E-06 8.7E-11 66.3 2.7 50 49-98 4-58 (64)
171 2rsn_A Chromo domain-containin 98.0 9.7E-07 3.3E-11 70.4 -0.0 52 100-173 22-73 (75)
172 1g6z_A CLR4 protein; transfera 98.0 2.6E-06 8.8E-11 67.3 2.2 53 100-174 9-62 (70)
173 3lwe_A M-phase phosphoprotein 98.0 1.4E-06 4.7E-11 67.0 0.6 53 99-174 4-56 (62)
174 1wee_A PHD finger family prote 97.9 2.8E-06 9.6E-11 67.7 1.9 48 49-97 14-65 (72)
175 1pdq_A Polycomb protein; methy 97.9 6.8E-07 2.3E-11 70.2 -1.8 49 100-172 21-69 (72)
176 2ee1_A Chromodomain helicase-D 97.9 2.7E-06 9.2E-11 65.0 1.2 52 100-172 12-63 (64)
177 3fdt_A Chromobox protein homol 97.9 8.5E-07 2.9E-11 67.4 -1.6 51 100-174 4-54 (59)
178 2kvm_A Chromobox protein homol 97.9 1.2E-06 4.2E-11 69.9 -0.8 51 99-173 13-63 (74)
179 3g7l_A Chromo domain-containin 97.9 1.3E-06 4.5E-11 66.8 -0.6 40 100-155 8-48 (61)
180 2vpb_A Hpygo1, pygopus homolog 97.9 1.6E-06 5.6E-11 66.9 -0.5 45 50-96 7-64 (65)
181 1ap0_A Modifier protein 1; chr 97.8 1.4E-06 4.6E-11 69.4 -1.2 53 99-175 13-65 (73)
182 2dnt_A Chromodomain protein, Y 97.8 2.8E-06 9.4E-11 68.6 0.3 55 99-175 13-67 (78)
183 1wem_A Death associated transc 97.8 1.5E-06 5.1E-11 70.2 -1.5 46 50-98 15-70 (76)
184 2xb1_A Pygopus homolog 2, B-ce 97.8 5.1E-06 1.7E-10 71.3 1.1 45 52-98 4-61 (105)
185 1wew_A DNA-binding family prot 97.8 5.6E-06 1.9E-10 67.0 1.2 46 50-98 15-72 (78)
186 1wep_A PHF8; structural genomi 97.8 7.1E-06 2.4E-10 66.6 1.8 48 49-99 10-64 (79)
187 4b3f_X DNA-binding protein smu 97.8 0.00016 5.3E-09 84.5 13.8 68 284-355 188-256 (646)
188 2gk6_A Regulator of nonsense t 97.7 0.00028 9.7E-09 81.8 15.5 173 284-469 179-376 (624)
189 3v43_A Histone acetyltransfera 97.7 3.7E-06 1.3E-10 73.5 -0.9 46 51-96 5-62 (112)
190 2ri7_A Nucleosome-remodeling f 97.7 3.5E-06 1.2E-10 80.5 -1.1 48 49-97 6-58 (174)
191 3upu_A ATP-dependent DNA helic 97.7 0.00035 1.2E-08 77.9 14.5 63 284-346 24-87 (459)
192 2rsd_A E3 SUMO-protein ligase 97.7 1.8E-05 6E-10 62.1 2.4 44 50-96 9-63 (68)
193 2wjy_A Regulator of nonsense t 97.6 0.0005 1.7E-08 81.4 15.8 169 284-469 355-552 (800)
194 1x3p_A Cpsrp43; chromo-2 domai 97.6 9.6E-06 3.3E-10 60.0 0.7 47 101-173 2-49 (54)
195 2rso_A Chromatin-associated pr 97.6 1.3E-05 4.4E-10 66.7 1.4 55 100-175 31-86 (92)
196 2xzl_A ATP-dependent helicase 97.6 0.00042 1.4E-08 82.2 14.8 172 284-469 359-554 (802)
197 3e1s_A Exodeoxyribonuclease V, 97.6 0.00035 1.2E-08 79.8 13.6 132 283-469 187-318 (574)
198 2b2y_C CHD-1, chromodomain-hel 97.6 1E-05 3.6E-10 68.9 0.7 51 191-241 36-96 (115)
199 2kgg_A Histone demethylase jar 97.5 2.9E-05 1E-09 57.2 1.3 41 54-96 5-52 (52)
200 4hae_A CDY-like 2, chromodomai 97.4 1.2E-05 4.2E-10 65.0 -1.1 40 100-154 24-63 (81)
201 3kqi_A GRC5, PHD finger protei 97.4 3.1E-05 1.1E-09 62.1 0.9 49 49-98 8-61 (75)
202 3o7a_A PHD finger protein 13 v 97.3 7.9E-05 2.7E-09 54.9 2.0 44 52-97 5-51 (52)
203 1w36_D RECD, exodeoxyribonucle 97.3 0.0012 4.1E-08 76.1 12.4 148 287-471 151-303 (608)
204 2b2y_A CHD-1, chromodomain-hel 97.1 0.00012 4.2E-09 69.7 1.9 52 191-242 36-97 (187)
205 2h1e_A Chromo domain protein 1 97.0 8.8E-05 3E-09 70.0 -0.5 37 206-242 46-84 (177)
206 3kv5_D JMJC domain-containing 96.9 0.00012 4.2E-09 80.7 -0.5 49 48-99 34-89 (488)
207 2orw_A Thymidine kinase; TMTK, 96.7 0.006 2E-07 58.5 10.1 37 305-342 4-40 (184)
208 3lfu_A DNA helicase II; SF1 he 96.6 0.0092 3.1E-07 69.6 12.4 66 285-356 9-78 (647)
209 3vkw_A Replicase large subunit 96.6 0.0031 1.1E-07 68.4 7.4 110 305-469 162-272 (446)
210 2j9r_A Thymidine kinase; TK1, 96.6 0.011 3.6E-07 57.6 10.4 35 307-342 31-65 (214)
211 3pur_A Lysine-specific demethy 96.6 0.00081 2.8E-08 73.2 2.6 35 62-98 57-94 (528)
212 2b8t_A Thymidine kinase; deoxy 96.4 0.0095 3.3E-07 58.8 8.9 39 303-342 11-49 (223)
213 3lqh_A Histone-lysine N-methyl 96.3 0.001 3.5E-08 62.9 1.6 47 52-100 3-65 (183)
214 1a5t_A Delta prime, HOLB; zinc 96.2 0.045 1.5E-06 57.9 13.5 46 286-331 3-51 (334)
215 2o0j_A Terminase, DNA packagin 96.1 0.015 5.3E-07 62.2 9.7 68 284-355 162-231 (385)
216 3mwy_W Chromo domain-containin 96.0 0.0006 2E-08 81.6 -2.5 39 192-230 38-95 (800)
217 1xx6_A Thymidine kinase; NESG, 95.9 0.026 9E-07 54.2 9.1 38 304-342 8-45 (191)
218 3a1b_A DNA (cytosine-5)-methyl 95.8 0.0019 6.6E-08 58.5 0.8 52 47-98 75-134 (159)
219 2orv_A Thymidine kinase; TP4A 95.7 0.039 1.3E-06 54.1 9.5 38 304-342 19-56 (234)
220 3cpe_A Terminase, DNA packagin 95.6 0.035 1.2E-06 63.7 10.5 69 284-356 162-232 (592)
221 3rsn_A SET1/ASH2 histone methy 95.6 0.0075 2.6E-07 55.8 3.8 45 52-97 6-58 (177)
222 3kup_A Chromobox protein homol 95.6 0.0014 4.8E-08 50.4 -0.9 33 192-224 13-45 (65)
223 3syl_A Protein CBBX; photosynt 95.5 0.01 3.5E-07 62.1 4.9 40 304-343 67-109 (309)
224 3u61_B DNA polymerase accessor 95.2 0.12 4E-06 54.2 12.3 51 428-478 105-157 (324)
225 4gne_A Histone-lysine N-methyl 95.2 0.0099 3.4E-07 50.6 2.9 38 54-92 61-98 (107)
226 4bbq_A Lysine-specific demethy 95.2 0.0064 2.2E-07 53.4 1.8 36 63-98 75-114 (117)
227 3kv4_A PHD finger protein 8; e 95.1 0.0018 6.2E-08 70.2 -2.3 44 52-98 6-56 (447)
228 3e2i_A Thymidine kinase; Zn-bi 95.1 0.084 2.9E-06 51.1 9.5 38 304-342 28-65 (219)
229 2chg_A Replication factor C sm 95.1 0.25 8.7E-06 47.9 13.6 27 305-331 39-65 (226)
230 1l8q_A Chromosomal replication 94.9 0.12 4.2E-06 54.1 11.2 38 304-342 37-74 (324)
231 2p65_A Hypothetical protein PF 94.8 0.2 6.8E-06 47.2 11.5 27 304-330 43-69 (187)
232 1njg_A DNA polymerase III subu 94.7 0.23 7.8E-06 49.0 12.2 44 287-330 28-71 (250)
233 1w4r_A Thymidine kinase; type 94.6 0.13 4.5E-06 49.1 9.3 38 304-342 20-57 (195)
234 3bos_A Putative DNA replicatio 94.6 0.068 2.3E-06 53.1 7.9 40 292-331 38-79 (242)
235 2gno_A DNA polymerase III, gam 94.5 0.17 5.9E-06 52.4 10.9 38 290-327 2-41 (305)
236 2pv0_B DNA (cytosine-5)-methyl 94.4 0.0053 1.8E-07 64.4 -1.0 51 48-98 90-148 (386)
237 3n70_A Transport activator; si 94.3 0.13 4.5E-06 46.7 8.5 41 297-338 17-57 (145)
238 3p7j_A Heterochromatin protein 93.9 0.0049 1.7E-07 49.8 -1.9 35 192-226 26-60 (87)
239 3i3c_A Chromobox protein homol 93.9 0.0032 1.1E-07 49.6 -2.9 32 192-223 23-54 (75)
240 2fmm_A Chromobox protein homol 93.8 0.0059 2E-07 48.2 -1.6 48 192-241 16-64 (74)
241 2bjv_A PSP operon transcriptio 93.8 0.21 7.2E-06 50.6 9.7 48 295-343 20-67 (265)
242 1sxj_B Activator 1 37 kDa subu 93.6 0.29 9.8E-06 51.0 10.6 24 306-329 44-67 (323)
243 1jbk_A CLPB protein; beta barr 93.6 0.79 2.7E-05 43.0 13.0 27 304-330 43-69 (195)
244 3q6s_A Chromobox protein homol 93.5 0.0059 2E-07 48.6 -2.0 32 192-223 10-41 (78)
245 1sxj_D Activator 1 41 kDa subu 93.5 0.15 5E-06 54.1 8.3 25 305-329 59-83 (353)
246 2z4s_A Chromosomal replication 93.5 0.16 5.3E-06 55.9 8.6 38 304-341 130-168 (440)
247 1iqp_A RFCS; clamp loader, ext 93.5 0.35 1.2E-05 50.4 11.1 24 306-329 48-71 (327)
248 3eie_A Vacuolar protein sortin 93.3 0.078 2.7E-06 55.7 5.5 36 304-343 51-86 (322)
249 1jr3_A DNA polymerase III subu 93.2 0.63 2.2E-05 49.5 12.8 25 306-330 40-64 (373)
250 1sxj_C Activator 1 40 kDa subu 92.9 0.4 1.4E-05 50.6 10.5 41 290-330 30-72 (340)
251 2chq_A Replication factor C sm 92.8 0.13 4.4E-06 53.6 6.4 38 293-330 25-64 (319)
252 2qp9_X Vacuolar protein sortin 92.8 0.078 2.7E-06 56.5 4.7 25 304-328 84-108 (355)
253 3co5_A Putative two-component 92.7 0.09 3.1E-06 47.8 4.3 24 301-324 24-47 (143)
254 2qby_B CDC6 homolog 3, cell di 92.5 0.19 6.4E-06 54.0 7.3 43 287-329 25-70 (384)
255 3uk6_A RUVB-like 2; hexameric 92.4 0.34 1.2E-05 51.6 9.1 53 287-341 49-105 (368)
256 3h4m_A Proteasome-activating n 92.3 0.24 8.3E-06 50.7 7.6 38 302-343 49-86 (285)
257 2v1u_A Cell division control p 92.3 0.28 9.7E-06 52.5 8.5 43 287-329 24-69 (387)
258 1xwi_A SKD1 protein; VPS4B, AA 92.3 0.11 3.7E-06 54.6 4.9 39 304-345 45-83 (322)
259 1sxj_A Activator 1 95 kDa subu 92.0 1.1 3.8E-05 50.1 13.2 25 304-328 77-101 (516)
260 1sxj_E Activator 1 40 kDa subu 91.6 0.99 3.4E-05 47.6 11.7 43 290-332 19-64 (354)
261 2ku7_A MLL1 PHD3-CYP33 RRM chi 91.5 0.09 3.1E-06 47.4 2.8 37 63-99 2-45 (140)
262 1ojl_A Transcriptional regulat 91.4 0.88 3E-05 47.1 10.7 47 297-344 18-64 (304)
263 3t15_A Ribulose bisphosphate c 91.4 0.22 7.5E-06 51.4 6.0 37 304-344 36-72 (293)
264 1fnn_A CDC6P, cell division co 91.3 1.3 4.4E-05 47.3 12.4 35 306-340 46-80 (389)
265 2qz4_A Paraplegin; AAA+, SPG7, 91.1 0.44 1.5E-05 47.9 7.8 38 303-344 38-75 (262)
266 1uaa_A REP helicase, protein ( 90.9 0.25 8.5E-06 57.6 6.6 66 285-356 2-71 (673)
267 3vfd_A Spastin; ATPase, microt 89.9 0.32 1.1E-05 52.5 5.8 41 304-348 148-188 (389)
268 3ec2_A DNA replication protein 89.7 0.4 1.4E-05 45.2 5.8 63 287-349 16-83 (180)
269 1d2n_A N-ethylmaleimide-sensit 89.2 0.73 2.5E-05 46.7 7.7 25 304-328 64-88 (272)
270 3d8b_A Fidgetin-like protein 1 89.2 0.27 9.3E-06 52.3 4.6 39 303-345 116-154 (357)
271 2zan_A Vacuolar protein sortin 89.1 0.18 6.1E-06 55.5 3.1 43 303-348 166-208 (444)
272 3pvs_A Replication-associated 88.8 0.41 1.4E-05 52.5 5.7 24 305-328 51-74 (447)
273 1pjr_A PCRA; DNA repair, DNA r 88.7 0.53 1.8E-05 55.3 6.9 76 285-366 11-94 (724)
274 4fcw_A Chaperone protein CLPB; 88.4 0.41 1.4E-05 49.6 5.2 35 305-340 48-82 (311)
275 2w58_A DNAI, primosome compone 88.3 0.61 2.1E-05 44.8 6.0 34 305-339 55-88 (202)
276 2qby_A CDC6 homolog 1, cell di 88.0 0.57 1.9E-05 50.0 6.1 44 287-330 25-71 (386)
277 3b9p_A CG5977-PA, isoform A; A 87.6 0.35 1.2E-05 49.8 4.0 26 303-328 53-78 (297)
278 2cvh_A DNA repair and recombin 87.1 2.1 7.1E-05 41.4 9.2 54 293-350 8-64 (220)
279 3k1j_A LON protease, ATP-depen 86.6 1.4 4.9E-05 50.4 8.7 58 290-347 46-116 (604)
280 3hu3_A Transitional endoplasmi 86.0 0.63 2.1E-05 51.6 5.1 35 302-340 236-270 (489)
281 3kl4_A SRP54, signal recogniti 85.6 2 6.8E-05 46.6 8.7 38 305-342 98-135 (433)
282 2ct0_A Non-SMC element 1 homol 84.9 0.32 1.1E-05 38.2 1.5 47 50-98 14-61 (74)
283 4b4t_J 26S protease regulatory 84.2 0.79 2.7E-05 49.0 4.6 49 302-354 180-228 (405)
284 1r6b_X CLPA protein; AAA+, N-t 84.2 5.2 0.00018 47.0 12.3 28 303-330 206-233 (758)
285 1gm5_A RECG; helicase, replica 84.1 7.9 0.00027 45.4 13.5 97 606-705 399-500 (780)
286 2qgz_A Helicase loader, putati 84.1 1.1 3.6E-05 46.5 5.5 35 304-339 152-187 (308)
287 1xp8_A RECA protein, recombina 83.5 2.4 8.1E-05 45.0 8.0 56 293-349 61-118 (366)
288 1qvr_A CLPB protein; coiled co 83.5 3.8 0.00013 48.9 10.8 28 303-330 190-217 (854)
289 1g5t_A COB(I)alamin adenosyltr 83.5 4.7 0.00016 38.3 9.2 38 303-341 27-64 (196)
290 3dm5_A SRP54, signal recogniti 83.4 1.9 6.5E-05 46.8 7.3 37 305-341 101-137 (443)
291 2px0_A Flagellar biosynthesis 83.1 3.8 0.00013 42.0 9.3 38 304-341 105-142 (296)
292 4b4t_M 26S protease regulatory 83.0 0.75 2.6E-05 49.9 3.9 47 302-352 213-259 (434)
293 4b4t_L 26S protease subunit RP 82.6 0.81 2.8E-05 49.7 4.0 47 302-352 213-259 (437)
294 2zr9_A Protein RECA, recombina 81.7 3.1 0.00011 43.8 8.1 55 293-348 48-104 (349)
295 3u4q_A ATP-dependent helicase/ 81.5 1.8 6.2E-05 54.0 7.1 54 283-342 8-66 (1232)
296 2zts_A Putative uncharacterize 81.2 1.8 6.3E-05 42.7 5.9 56 301-356 27-82 (251)
297 2d8s_A Cellular modulator of i 80.9 0.35 1.2E-05 38.8 0.2 48 50-99 14-68 (80)
298 4b4t_I 26S protease regulatory 80.8 1.1 3.7E-05 48.2 4.1 48 302-353 214-261 (437)
299 1vyx_A ORF K3, K3RING; zinc-bi 80.6 0.13 4.4E-06 38.8 -2.3 47 50-98 5-56 (60)
300 2zpa_A Uncharacterized protein 80.1 5.5 0.00019 45.4 9.8 54 284-343 174-227 (671)
301 2ce7_A Cell division protein F 79.8 2.7 9.4E-05 46.2 7.1 35 304-342 49-83 (476)
302 4b4t_K 26S protease regulatory 79.8 1.1 3.9E-05 48.4 3.9 46 302-351 204-249 (428)
303 4b4t_H 26S protease regulatory 79.5 1.1 3.7E-05 48.7 3.6 47 302-352 241-287 (467)
304 3bh0_A DNAB-like replicative h 79.2 4.9 0.00017 41.6 8.5 62 293-355 57-118 (315)
305 3hjh_A Transcription-repair-co 77.1 3.5 0.00012 45.4 6.9 57 303-364 13-70 (483)
306 1iym_A EL5; ring-H2 finger, ub 76.9 1.4 4.9E-05 31.9 2.6 44 51-98 5-52 (55)
307 2q6t_A DNAB replication FORK h 76.5 4.5 0.00015 44.2 7.6 61 292-352 188-248 (444)
308 3crv_A XPD/RAD3 related DNA he 76.1 12 0.00039 42.2 11.1 98 612-720 380-486 (551)
309 2c9o_A RUVB-like 1; hexameric 76.1 2 6.8E-05 47.2 4.6 44 303-348 62-105 (456)
310 2z43_A DNA repair and recombin 75.9 7.1 0.00024 40.5 8.6 52 293-344 95-152 (324)
311 4bbq_A Lysine-specific demethy 74.6 0.76 2.6E-05 39.9 0.6 37 50-97 6-42 (117)
312 1tue_A Replication protein E1; 73.5 3.4 0.00012 39.6 4.8 24 305-328 59-82 (212)
313 3bgw_A DNAB-like replicative h 72.3 6.3 0.00021 43.0 7.4 62 292-354 185-246 (444)
314 2r6a_A DNAB helicase, replicat 72.1 5.9 0.0002 43.4 7.1 60 293-352 192-251 (454)
315 1x4j_A Ring finger protein 38; 71.9 0.65 2.2E-05 36.5 -0.5 46 50-99 22-70 (75)
316 3io5_A Recombination and repai 71.5 6.2 0.00021 40.6 6.5 45 302-347 27-72 (333)
317 2r44_A Uncharacterized protein 71.5 2.1 7.3E-05 44.6 3.3 36 293-328 35-70 (331)
318 2kiz_A E3 ubiquitin-protein li 70.5 0.65 2.2E-05 35.8 -0.8 44 51-98 14-60 (69)
319 3nw0_A Non-structural maintena 70.3 1.7 5.7E-05 43.0 1.9 47 50-98 179-226 (238)
320 2dr3_A UPF0273 protein PH0284; 69.7 7.3 0.00025 38.2 6.7 53 301-354 20-72 (247)
321 3cmu_A Protein RECA, recombina 69.6 5.9 0.0002 51.1 7.1 53 301-356 1424-1476(2050)
322 2ect_A Ring finger protein 126 69.6 2.3 7.9E-05 33.5 2.3 46 50-99 14-62 (78)
323 2lq6_A Bromodomain-containing 69.5 1.5 5.2E-05 35.6 1.2 29 51-79 17-49 (87)
324 4a1f_A DNAB helicase, replicat 69.2 8.8 0.0003 40.0 7.3 59 293-352 35-93 (338)
325 2dhr_A FTSH; AAA+ protein, hex 69.2 19 0.00063 39.8 10.3 34 304-341 64-97 (499)
326 1qvr_A CLPB protein; coiled co 68.4 4.6 0.00016 48.2 5.6 34 305-339 589-622 (854)
327 1ofh_A ATP-dependent HSL prote 68.1 4 0.00014 41.8 4.5 26 303-328 49-74 (310)
328 3cf0_A Transitional endoplasmi 67.9 4.2 0.00014 41.8 4.5 38 302-343 47-84 (301)
329 1bor_A Transcription factor PM 67.5 7.6 0.00026 28.2 4.6 44 49-99 4-47 (56)
330 3te6_A Regulatory protein SIR3 66.8 4.8 0.00016 41.6 4.6 44 287-330 25-71 (318)
331 3hws_A ATP-dependent CLP prote 66.3 6.7 0.00023 41.4 5.9 36 303-342 50-85 (363)
332 1weq_A PHD finger protein 7; s 66.2 5.4 0.00018 32.0 3.7 33 63-98 46-79 (85)
333 1q57_A DNA primase/helicase; d 65.8 7.7 0.00026 43.0 6.5 59 294-352 232-290 (503)
334 1lv7_A FTSH; alpha/beta domain 65.3 8.3 0.00028 38.2 6.1 25 304-328 45-69 (257)
335 3kup_A Chromobox protein homol 64.9 1.7 5.7E-05 33.1 0.5 23 130-154 27-49 (65)
336 2r8r_A Sensor protein; KDPD, P 64.5 7.3 0.00025 37.9 5.2 44 306-349 8-52 (228)
337 1e0b_A SWI6 protein; chromatin 64.3 1.3 4.5E-05 34.0 -0.1 25 192-216 11-36 (68)
338 3k1l_B Fancl; UBC, ring, RWD, 64.3 0.96 3.3E-05 46.4 -1.2 47 51-97 308-369 (381)
339 2ecl_A Ring-box protein 2; RNF 64.0 2 6.7E-05 34.4 0.8 31 65-99 44-74 (81)
340 2l0b_A E3 ubiquitin-protein li 63.3 1.7 5.9E-05 35.6 0.4 45 50-98 39-86 (91)
341 3cf2_A TER ATPase, transitiona 63.2 3.2 0.00011 48.6 2.8 43 303-349 237-279 (806)
342 2w0m_A SSO2452; RECA, SSPF, un 62.7 10 0.00036 36.5 6.2 56 293-349 11-67 (235)
343 3oiy_A Reverse gyrase helicase 62.3 22 0.00074 38.0 9.2 94 606-701 46-145 (414)
344 2r62_A Cell division protease 62.2 8.4 0.00029 38.4 5.4 26 303-328 43-68 (268)
345 2ecm_A Ring finger and CHY zin 61.3 1.6 5.6E-05 31.6 -0.1 44 51-98 5-52 (55)
346 2i1q_A DNA repair and recombin 59.2 26 0.00088 36.0 8.7 36 293-328 86-122 (322)
347 1u0j_A DNA replication protein 59.1 6.2 0.00021 39.5 3.6 22 306-327 106-127 (267)
348 1cr0_A DNA primase/helicase; R 59.0 19 0.00065 36.5 7.6 52 297-348 28-79 (296)
349 2kn9_A Rubredoxin; metalloprot 58.6 6.7 0.00023 31.1 3.0 13 87-99 58-70 (81)
350 3u4q_B ATP-dependent helicase/ 58.3 10 0.00035 47.0 6.3 50 308-357 5-56 (1166)
351 3nbx_X ATPase RAVA; AAA+ ATPas 58.2 5.2 0.00018 44.3 3.2 36 293-328 30-65 (500)
352 1hqc_A RUVB; extended AAA-ATPa 58.1 15 0.00052 37.6 6.7 26 303-328 37-62 (324)
353 6rxn_A Rubredoxin; electron tr 58.0 5.7 0.0002 27.7 2.2 34 64-98 5-39 (46)
354 2ysl_A Tripartite motif-contai 58.0 5.5 0.00019 30.7 2.5 48 50-99 19-67 (73)
355 3i3c_A Chromobox protein homol 57.9 2.5 8.4E-05 33.2 0.4 23 130-154 37-59 (75)
356 3pfi_A Holliday junction ATP-d 57.1 14 0.00049 38.2 6.4 24 304-327 55-78 (338)
357 2d8t_A Dactylidin, ring finger 56.6 3.4 0.00012 31.9 1.0 45 50-99 14-59 (71)
358 1v87_A Deltex protein 2; ring- 56.5 2.3 8E-05 36.4 0.0 34 66-99 58-92 (114)
359 2yur_A Retinoblastoma-binding 56.4 3.1 0.00011 32.4 0.8 54 50-105 14-68 (74)
360 2fmm_A Chromobox protein homol 55.1 3.3 0.00011 32.4 0.7 24 130-155 30-53 (74)
361 2r2a_A Uncharacterized protein 54.8 11 0.00039 35.8 4.6 23 306-328 7-29 (199)
362 3trf_A Shikimate kinase, SK; a 54.7 8.6 0.00029 35.8 3.7 25 304-328 5-29 (185)
363 1e8j_A Rubredoxin; iron-sulfur 53.7 13 0.00044 26.7 3.6 13 87-99 34-46 (52)
364 1chc_A Equine herpes virus-1 r 53.6 2.8 9.5E-05 31.9 0.0 46 51-100 5-51 (68)
365 2ecn_A Ring finger protein 141 53.5 2 6.8E-05 33.0 -0.8 45 51-100 15-59 (70)
366 2l82_A Designed protein OR32; 53.1 48 0.0016 27.2 7.2 47 626-672 4-50 (162)
367 1p9r_A General secretion pathw 52.9 25 0.00086 37.7 7.4 43 284-328 149-191 (418)
368 2oap_1 GSPE-2, type II secreti 52.8 9.6 0.00033 42.3 4.2 37 286-325 245-281 (511)
369 2kjq_A DNAA-related protein; s 52.8 9.2 0.00031 34.5 3.4 28 303-330 35-62 (149)
370 3vaa_A Shikimate kinase, SK; s 52.8 9.8 0.00033 36.0 3.8 27 302-328 23-49 (199)
371 2lrq_A Protein MRG15, NUA4 com 58.0 2.9 9.9E-05 33.7 0.0 25 131-155 42-66 (85)
372 3cmu_A Protein RECA, recombina 52.4 18 0.0006 46.8 6.9 57 292-349 718-776 (2050)
373 3cmw_A Protein RECA, recombina 51.9 19 0.00064 45.8 7.0 55 293-348 719-775 (1706)
374 1nlf_A Regulatory protein REPA 51.3 32 0.0011 34.4 7.7 54 302-355 28-90 (279)
375 3dpl_R Ring-box protein 1; ubi 51.1 3.3 0.00011 35.1 0.1 45 50-98 36-98 (106)
376 1u94_A RECA protein, recombina 50.8 19 0.00066 37.7 6.0 52 293-345 50-103 (356)
377 2qmh_A HPR kinase/phosphorylas 50.7 7.9 0.00027 36.8 2.7 25 303-327 33-57 (205)
378 3pxg_A Negative regulator of g 50.2 12 0.00041 41.0 4.5 29 302-330 199-227 (468)
379 4a0k_B E3 ubiquitin-protein li 49.9 4 0.00014 35.2 0.4 27 68-98 83-109 (117)
380 2eyq_A TRCF, transcription-rep 49.7 45 0.0015 41.0 9.9 94 606-701 634-731 (1151)
381 3iij_A Coilin-interacting nucl 49.6 13 0.00044 34.4 4.0 26 303-328 10-35 (180)
382 1um8_A ATP-dependent CLP prote 49.5 10 0.00035 40.1 3.7 26 303-328 71-96 (376)
383 4ddu_A Reverse gyrase; topoiso 49.2 43 0.0015 41.0 9.5 97 606-704 103-205 (1104)
384 1n0w_A DNA repair protein RAD5 48.5 18 0.00061 35.1 5.1 50 293-342 12-67 (243)
385 2egp_A Tripartite motif-contai 48.0 16 0.00053 28.5 3.7 50 50-100 11-64 (79)
386 3g5j_A Putative ATP/GTP bindin 47.7 27 0.00091 30.2 5.7 54 608-661 73-127 (134)
387 2x8a_A Nuclear valosin-contain 47.4 15 0.00052 36.9 4.4 43 302-348 42-84 (274)
388 3of5_A Dethiobiotin synthetase 47.3 16 0.00056 35.5 4.5 26 308-333 9-34 (228)
389 1ixz_A ATP-dependent metallopr 47.2 27 0.00094 34.2 6.3 25 304-328 49-73 (254)
390 2xxa_A Signal recognition part 47.2 17 0.00058 39.3 5.0 37 305-341 101-137 (433)
391 2ecy_A TNF receptor-associated 46.1 3.7 0.00013 31.1 -0.4 46 50-99 14-60 (66)
392 3qxc_A Dethiobiotin synthetase 46.1 17 0.00059 35.8 4.4 26 308-333 26-51 (242)
393 3tqf_A HPR(Ser) kinase; transf 46.0 12 0.00042 34.6 3.1 24 303-326 15-38 (181)
394 3m9q_A Protein MALE-specific l 45.6 2.2 7.4E-05 35.5 -1.8 25 130-154 58-82 (101)
395 3ui2_A Signal recognition part 45.2 8.1 0.00028 38.0 1.9 46 192-241 187-232 (244)
396 1g41_A Heat shock protein HSLU 45.1 18 0.00062 39.1 4.8 26 303-328 49-74 (444)
397 2pt7_A CAG-ALFA; ATPase, prote 45.0 17 0.00059 37.7 4.5 28 294-321 161-188 (330)
398 3ipz_A Monothiol glutaredoxin- 44.8 80 0.0027 26.3 8.0 56 614-670 8-69 (109)
399 1v5n_A PDI-like hypothetical p 44.4 10 0.00035 30.8 2.1 32 52-83 48-81 (89)
400 1aky_A Adenylate kinase; ATP:A 44.3 16 0.00053 35.2 3.8 25 304-328 4-28 (220)
401 1qhx_A CPT, protein (chloramph 44.1 14 0.00048 33.9 3.4 24 305-328 4-27 (178)
402 1in4_A RUVB, holliday junction 44.1 14 0.00049 38.3 3.8 24 305-328 52-75 (334)
403 1e4u_A Transcriptional repress 43.9 7.3 0.00025 30.8 1.1 48 50-101 10-62 (78)
404 4ag6_A VIRB4 ATPase, type IV s 43.9 35 0.0012 36.2 6.9 43 302-345 33-75 (392)
405 3cf2_A TER ATPase, transitiona 43.8 7.6 0.00026 45.5 1.7 43 303-349 510-552 (806)
406 1kht_A Adenylate kinase; phosp 43.6 16 0.00055 33.9 3.7 27 304-330 3-29 (192)
407 2ga8_A Hypothetical 39.9 kDa p 43.2 27 0.00091 36.5 5.5 34 295-328 13-48 (359)
408 1y63_A LMAJ004144AAA protein; 43.2 16 0.00056 33.9 3.7 25 303-327 9-33 (184)
409 1zuh_A Shikimate kinase; alpha 43.1 16 0.00055 33.2 3.6 25 304-328 7-31 (168)
410 2csy_A Zinc finger protein 183 43.1 3.2 0.00011 33.0 -1.2 45 50-99 14-59 (81)
411 3pxi_A Negative regulator of g 43.1 20 0.00067 42.1 5.1 25 306-330 523-547 (758)
412 3cwq_A Para family chromosome 42.9 24 0.00083 33.6 4.9 41 308-350 5-47 (209)
413 3a8t_A Adenylate isopentenyltr 42.7 9.8 0.00034 39.5 2.1 25 304-328 40-64 (339)
414 3lrq_A E3 ubiquitin-protein li 42.5 3.2 0.00011 34.7 -1.4 47 50-99 21-68 (100)
415 3kb2_A SPBC2 prophage-derived 42.2 17 0.00059 33.0 3.6 23 306-328 3-25 (173)
416 3fgn_A Dethiobiotin synthetase 42.2 21 0.00073 35.3 4.4 27 307-333 30-56 (251)
417 1ak2_A Adenylate kinase isoenz 42.0 18 0.00061 35.2 3.9 26 303-328 15-40 (233)
418 2c95_A Adenylate kinase 1; tra 41.9 21 0.0007 33.3 4.2 27 302-328 7-33 (196)
419 2ecj_A Tripartite motif-contai 41.7 7.5 0.00025 28.2 0.8 44 50-95 14-58 (58)
420 2yvu_A Probable adenylyl-sulfa 41.5 23 0.00078 32.8 4.4 27 304-330 13-39 (186)
421 1xjc_A MOBB protein homolog; s 41.4 24 0.00083 32.5 4.4 28 306-333 6-33 (169)
422 3zyw_A Glutaredoxin-3; metal b 41.3 98 0.0033 25.9 8.0 55 614-669 6-66 (111)
423 2k1p_A Zinc finger RAN-binding 41.3 10 0.00034 24.4 1.2 13 86-98 3-15 (33)
424 2rhm_A Putative kinase; P-loop 41.2 17 0.00057 33.9 3.4 25 304-328 5-29 (193)
425 4rxn_A Rubredoxin; electron tr 41.2 15 0.00053 26.6 2.3 12 87-98 34-45 (54)
426 1iy2_A ATP-dependent metallopr 41.2 37 0.0013 33.9 6.2 25 304-328 73-97 (278)
427 3ice_A Transcription terminati 40.9 33 0.0011 36.3 5.7 74 291-368 162-235 (422)
428 2ze6_A Isopentenyl transferase 40.9 17 0.00058 36.0 3.5 22 307-328 4-25 (253)
429 3nwj_A ATSK2; P loop, shikimat 40.6 23 0.0008 35.0 4.5 25 304-328 48-72 (250)
430 3ng2_A RNF4, snurf, ring finge 40.5 4.9 0.00017 30.8 -0.5 46 50-99 9-61 (71)
431 4b3f_X DNA-binding protein smu 40.4 71 0.0024 36.4 9.2 50 606-655 215-264 (646)
432 2ep4_A Ring finger protein 24; 40.1 4.7 0.00016 31.2 -0.6 47 51-101 15-64 (74)
433 4cpa_I Metallocarboxypeptidase 40.0 15 0.0005 23.5 1.7 25 75-99 6-31 (38)
434 3cm0_A Adenylate kinase; ATP-b 39.9 16 0.00055 33.8 3.0 25 304-328 4-28 (186)
435 1u6t_A SH3 domain-binding glut 39.8 53 0.0018 28.2 6.0 45 627-671 2-53 (121)
436 3ea0_A ATPase, para family; al 39.5 31 0.001 33.5 5.2 33 308-340 9-41 (245)
437 2lnd_A De novo designed protei 39.5 1.3E+02 0.0044 23.2 7.9 61 610-671 37-99 (112)
438 1v5w_A DMC1, meiotic recombina 39.1 56 0.0019 33.9 7.4 52 293-344 110-167 (343)
439 1e9r_A Conjugal transfer prote 38.9 22 0.00076 38.4 4.4 40 303-343 52-91 (437)
440 2ckl_B Ubiquitin ligase protei 38.9 6.5 0.00022 36.2 0.0 47 50-99 53-100 (165)
441 2qor_A Guanylate kinase; phosp 38.8 19 0.00066 34.1 3.5 27 302-328 10-36 (204)
442 1zak_A Adenylate kinase; ATP:A 38.8 21 0.00072 34.3 3.8 25 304-328 5-29 (222)
443 1byi_A Dethiobiotin synthase; 38.7 26 0.00088 33.6 4.4 33 308-341 6-38 (224)
444 1g8p_A Magnesium-chelatase 38 38.7 11 0.00036 39.3 1.7 26 303-328 44-69 (350)
445 3i42_A Response regulator rece 38.6 65 0.0022 26.9 6.7 95 623-723 26-124 (127)
446 2lk0_A RNA-binding protein 5; 38.6 7.3 0.00025 24.8 0.2 11 87-97 3-13 (32)
447 3hr8_A Protein RECA; alpha and 38.4 40 0.0014 35.2 6.0 54 293-347 48-103 (356)
448 3gx8_A Monothiol glutaredoxin- 38.3 1.4E+02 0.0047 25.4 8.6 54 615-669 7-69 (121)
449 1nks_A Adenylate kinase; therm 37.8 20 0.00069 33.2 3.4 25 306-330 3-27 (194)
450 3pxi_A Negative regulator of g 37.7 23 0.00078 41.5 4.5 29 302-330 199-227 (758)
451 3p7j_A Heterochromatin protein 37.6 9.6 0.00033 30.7 0.8 23 130-154 40-62 (87)
452 2bud_A Males-absent on the fir 37.6 10 0.00035 30.8 1.0 24 131-154 48-71 (92)
453 1via_A Shikimate kinase; struc 37.5 24 0.0008 32.4 3.7 23 306-328 6-28 (175)
454 3jvv_A Twitching mobility prot 37.0 23 0.0008 37.1 4.0 28 302-329 121-148 (356)
455 2ewv_A Twitching motility prot 36.7 23 0.0008 37.3 4.0 38 302-339 134-171 (372)
456 1nn5_A Similar to deoxythymidy 36.6 49 0.0017 31.2 6.0 28 303-330 8-35 (215)
457 3lte_A Response regulator; str 36.5 54 0.0019 27.6 5.8 31 624-654 6-36 (132)
458 2iyv_A Shikimate kinase, SK; t 36.5 26 0.00089 32.3 3.9 24 305-328 3-26 (184)
459 2r2a_A Uncharacterized protein 36.4 17 0.00057 34.6 2.5 38 429-466 88-132 (199)
460 2ecv_A Tripartite motif-contai 36.4 11 0.00037 29.8 1.0 50 50-100 18-70 (85)
461 2iut_A DNA translocase FTSK; n 36.3 39 0.0013 37.7 5.8 41 303-343 213-256 (574)
462 3m9p_A MALE-specific lethal 3 36.2 3.3 0.00011 34.9 -2.1 24 131-154 59-82 (110)
463 2ea6_A Ring finger protein 4; 36.2 2.3 7.9E-05 32.4 -3.0 45 50-98 14-65 (69)
464 4akg_A Glutathione S-transfera 36.1 40 0.0014 45.1 6.7 61 284-344 903-965 (2695)
465 3nhm_A Response regulator; pro 36.1 1.6E+02 0.0054 24.6 8.9 93 623-721 26-122 (133)
466 3dc4_A Kinesin-like protein NO 36.1 25 0.00084 36.6 3.9 17 305-321 95-112 (344)
467 3bs4_A Uncharacterized protein 35.9 49 0.0017 32.8 6.0 53 303-356 20-72 (260)
468 1vma_A Cell division protein F 35.9 29 0.001 35.4 4.4 35 305-340 105-139 (306)
469 2j48_A Two-component sensor ki 35.8 44 0.0015 27.3 5.0 16 704-719 101-116 (119)
470 2ehv_A Hypothetical protein PH 35.8 43 0.0015 32.5 5.6 46 302-347 28-73 (251)
471 3sxu_A DNA polymerase III subu 35.8 43 0.0015 30.1 5.0 39 607-645 22-60 (150)
472 2jaq_A Deoxyguanosine kinase; 35.8 24 0.00081 33.1 3.5 22 307-328 3-24 (205)
473 2ecw_A Tripartite motif-contai 35.8 5.9 0.0002 31.4 -0.7 48 51-99 19-69 (85)
474 3crm_A TRNA delta(2)-isopenten 35.4 20 0.00069 36.9 3.1 24 305-328 6-29 (323)
475 2vhj_A Ntpase P4, P4; non- hyd 35.4 20 0.00067 37.0 3.0 26 302-327 121-146 (331)
476 3exa_A TRNA delta(2)-isopenten 35.1 19 0.00064 37.0 2.7 23 306-328 5-27 (322)
477 1tev_A UMP-CMP kinase; ploop, 35.1 24 0.00082 32.7 3.4 24 305-328 4-27 (196)
478 3be4_A Adenylate kinase; malar 35.0 25 0.00086 33.6 3.6 25 304-328 5-29 (217)
479 2y1n_A E3 ubiquitin-protein li 35.0 9.6 0.00033 40.2 0.6 49 50-101 331-379 (389)
480 2v54_A DTMP kinase, thymidylat 34.9 20 0.00067 33.7 2.8 26 303-328 3-28 (204)
481 2xeu_A Ring finger protein 4; 34.8 5.6 0.00019 29.6 -1.0 45 51-99 3-54 (64)
482 2cdn_A Adenylate kinase; phosp 34.7 28 0.00096 32.7 3.9 24 305-328 21-44 (201)
483 3d3q_A TRNA delta(2)-isopenten 34.7 22 0.00075 36.9 3.2 23 306-328 9-31 (340)
484 3fb4_A Adenylate kinase; psych 34.6 25 0.00084 33.5 3.5 22 307-328 3-24 (216)
485 3gbj_A KIF13B protein; kinesin 34.5 31 0.001 36.1 4.4 22 302-323 89-112 (354)
486 3l11_A E3 ubiquitin-protein li 34.5 14 0.00049 31.3 1.6 43 51-98 15-59 (115)
487 3foz_A TRNA delta(2)-isopenten 34.4 22 0.00074 36.4 3.1 23 306-328 12-34 (316)
488 1ry6_A Internal kinesin; kines 34.4 25 0.00084 36.9 3.6 24 300-323 79-104 (360)
489 3t61_A Gluconokinase; PSI-biol 34.4 26 0.00089 33.0 3.6 24 305-328 19-42 (202)
490 4ayc_A E3 ubiquitin-protein li 34.3 7.5 0.00026 34.6 -0.4 43 51-98 53-96 (138)
491 1kag_A SKI, shikimate kinase I 34.3 27 0.00092 31.7 3.6 24 304-327 4-27 (173)
492 3zq6_A Putative arsenical pump 34.2 33 0.0011 35.3 4.6 34 307-341 17-50 (324)
493 1qf9_A UMP/CMP kinase, protein 34.1 25 0.00086 32.5 3.4 24 305-328 7-30 (194)
494 3gk5_A Uncharacterized rhodane 34.1 27 0.00092 29.2 3.2 38 622-659 53-90 (108)
495 1w5s_A Origin recognition comp 34.1 35 0.0012 36.1 5.0 43 287-329 27-77 (412)
496 3lw7_A Adenylate kinase relate 34.0 22 0.00074 32.2 2.9 18 307-324 4-21 (179)
497 3umf_A Adenylate kinase; rossm 34.0 27 0.00094 33.6 3.6 27 302-328 27-53 (217)
498 1dx8_A Rubredoxin; electron tr 33.9 33 0.0011 26.3 3.3 15 87-101 38-52 (70)
499 1jm7_B BARD1, BRCA1-associated 33.9 26 0.00087 29.9 3.1 43 50-98 21-64 (117)
500 2wwf_A Thymidilate kinase, put 33.8 28 0.00095 32.9 3.7 27 303-329 9-35 (212)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-100 Score=914.70 Aligned_cols=635 Identities=44% Similarity=0.745 Sum_probs=508.1
Q ss_pred CcccccccccccccCcCCCCCcccc---cccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhhhc
Q 003450 99 LNDIDKILDCEMRPTVAGDSDVSKL---GSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMS 175 (819)
Q Consensus 99 ~~~~~~il~~r~~p~~~~~~~~~~~---~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~~~ 175 (819)
...||+|++.|.++....+...... ........||||||+|+||+||||+|+++|.+ .++. .++.+|.++..
T Consensus 37 ~~~ve~vl~~r~~~~~~~~~~~~~~~~~~~~~~~~~eylvKWkg~s~~hntWe~~e~L~~----~~~~-~~~~~~~k~~~ 111 (800)
T 3mwy_W 37 FHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQ----VRGL-KRLDNYCKQFI 111 (800)
T ss_dssp CCBCSEEEEEECCCC--------CCSCCHHHHHHHCEEEEECSSSCTTSCEEECHHHHCS----CBTT-HHHHHHHHHHT
T ss_pred CCchhhhccccccccccCCccccccCcCcCCCcCceEEEEEeCCcceeeccccCHHHHhh----cchH-HHHHHHHHHhh
Confidence 4568999999887544332221111 11113347999999999999999999999852 2222 24555554321
Q ss_pred --------cCCCCchhh----------hccCCccchhhhHhhhhc-----CCcceeeEeeecccccccccccCCCCccc-
Q 003450 176 --------SNNNAEEDF----------VAIRPEWTTVDRILACRG-----EDDEKEYLVKYKELSYDECYWEYESDISA- 231 (819)
Q Consensus 176 --------~~~~~~~~~----------~~~~~~~~~~eril~~~~-----~~~~~~~lvKw~~l~y~~~TWE~~~~~~~- 231 (819)
.+....++. ....++|.+|||||+++. ..+..+|||||++|+|++||||...++..
T Consensus 112 ~~~~~~~~~~~~~~e~~e~~~~~~e~~~~~~~~~~~veRii~~~~~~~~~~~~~~~yLvKW~~L~y~~~tWe~~~~~~~~ 191 (800)
T 3mwy_W 112 IEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKL 191 (800)
T ss_dssp HHHHHHTCSTTSCHHHHHHHHHHHHHHHHHHTTTTCEEEECCCCCEECTTSCEECBCCEEETTSCSTTCBCCBHHHHTTT
T ss_pred hHHHHHhcCCCCCHHHHHHHhhhhhhhccccccccceeEEEeecccccCCCCCceEEEEEecCCCcccccccchhhhhhh
Confidence 111122211 123478999999999986 55678999999999999999998766543
Q ss_pred cHHHHHHHHHHhhhccccccCccCCCCccccccCCCCcccccccCCCCCCCCCCCchhHHHHHHHHHHhhcCCCceEEEc
Q 003450 232 FQPEIERFIKIQSRSHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILAD 311 (819)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~L~~~Q~~~v~~l~~~~~~~~~~iLad 311 (819)
.++.++.|......... +............|..+..+|++..+++|||||++|++||...+..++++||||
T Consensus 192 ~~~~i~~~~~r~~~~~~---------~~~~~~~~~~~~~~~~~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILad 262 (800)
T 3mwy_W 192 APEQVKHFQNRENSKIL---------PQYSSNYTSQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILAD 262 (800)
T ss_dssp CHHHHHHHHHTTTCTTC---------STTCCCCCSCCCCCCCCSSCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECC
T ss_pred hHHHHHHHHHhhhcccC---------CcchhcccccCCcccccccCCCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEe
Confidence 35667888664321110 000001112234577888899999899999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhc--CCCCceEEEecCcchHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCccccc
Q 003450 312 EMGLGKTIQSIAFLASLFG--ERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVK 389 (819)
Q Consensus 312 e~GlGKT~~~i~~l~~l~~--~~~~~~LIv~P~~ll~qW~~e~~~~~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~ 389 (819)
+||+|||+++++++.+++. ...+|+|||||.+++.||.+||.+|+|++++++++|....+..++.++++......
T Consensus 263 emGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~--- 339 (800)
T 3mwy_W 263 EMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAK--- 339 (800)
T ss_dssp CTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC------
T ss_pred CCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhcccccc---
Confidence 9999999999999988753 34569999999999999999999999999999999999999999988876433211
Q ss_pred cccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccccccCcccHHHHHHHhcccCcEEEEeCCCCCC
Q 003450 390 KKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQN 469 (819)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n 469 (819)
.....+++|+||||+++..+...+..++|++|||||||++||..++.++++..+.+.+||+|||||++|
T Consensus 340 -----------~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN 408 (800)
T 3mwy_W 340 -----------GKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQN 408 (800)
T ss_dssp -------------CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSS
T ss_pred -----------ccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCCC
Confidence 113357899999999999999899999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHH
Q 003450 470 NLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYK 549 (819)
Q Consensus 470 ~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~ 549 (819)
++.|||++++||.|+.|.....|............+..|+..+.|+++||++.++...+|++.+.++.|+|++.|+++|+
T Consensus 409 ~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~ 488 (800)
T 3mwy_W 409 NIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYK 488 (800)
T ss_dssp CSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHH
T ss_pred CHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHH
Confidence 99999999999999999877776544444445567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCCcchHHHHHHHHHHhcCCCcccCCCCC--------CccCcHHHHHHhhhcCchHHHHHHHHHHH
Q 003450 550 AILTRNYQILTRR-GGAQISLINVVMELRKLCCHPYMLEGVEP--------DIEDTNESFKQLLESSGKLQLLDKMMVKL 620 (819)
Q Consensus 550 ~i~~~~~~~l~~~-~~~~~~~~~~~~~lr~~~~hp~l~~~~~~--------~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l 620 (819)
.++.+....+... .+...++++.++.||++|+||+++...+. ...........++..|+|+.+|.++|..+
T Consensus 489 ~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~ 568 (800)
T 3mwy_W 489 NILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRL 568 (800)
T ss_dssp HHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHH
Confidence 9988766555432 33445789999999999999999865321 12233455677888999999999999999
Q ss_pred HhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEE
Q 003450 621 KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (819)
Q Consensus 621 ~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI 700 (819)
.+.|+|+||||+++.++++|.++|...|+++.+++|+++..+|++++++|++++++.++||+||++||+||||++|++||
T Consensus 569 ~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI 648 (800)
T 3mwy_W 569 KKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVV 648 (800)
T ss_dssp TTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEE
T ss_pred hhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEE
Confidence 99999999999999999999999999999999999999999999999999998888888999999999999999999999
Q ss_pred EeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhhHHHHhchhh
Q 003450 701 IYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK 761 (819)
Q Consensus 701 ~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~~K~~l~~~v~~~~~ 761 (819)
+||++|||..++||+||+||+||+++|.||+|++++|+||+|++++.+|+.+.+++++...
T Consensus 649 ~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~ 709 (800)
T 3mwy_W 649 IFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGV 709 (800)
T ss_dssp ESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC-------
T ss_pred EecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHccCc
Confidence 9999999999999999999999999999999999999999999999999999999997643
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.2e-72 Score=657.74 Aligned_cols=457 Identities=34% Similarity=0.562 Sum_probs=384.5
Q ss_pred CCCchhHHHHHHHHHHhh-----cCCCceEEEcCCCCcHHHHHHHHHHHHhcCC------CCceEEEecCcchHHHHHHH
Q 003450 284 GSLHPYQLEGLNFLRFSW-----SKQTHVILADEMGLGKTIQSIAFLASLFGER------ISPHLVVAPLSTLRNWEREF 352 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~-----~~~~~~iLade~GlGKT~~~i~~l~~l~~~~------~~~~LIv~P~~ll~qW~~e~ 352 (819)
..|||||.+|++||...+ ..++|+||||+||+|||+++++++..+...+ .+++|||||.+++.||.+||
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E~ 133 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEV 133 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHHHH
Confidence 579999999999997765 4667899999999999999999999886543 24799999999999999999
Q ss_pred HHHcCC-CeEEEEecChhH-H-HHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccc
Q 003450 353 ATWAPQ-MNVVMYVGTSQA-R-NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (819)
Q Consensus 353 ~~~~p~-~~v~~~~g~~~~-r-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~ 429 (819)
.+|+|. +.++.++|+... . ..+..+. . . ......++|+|+||+++..+...+....|
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~-~-----------------~~~~~~~~vvi~ty~~l~~~~~~l~~~~~ 193 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFI--S-Q-----------------QGMRIPTPILIISYETFRLHAEVLHKGKV 193 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHH--C-C-----------------CSSCCSCCEEEEEHHHHHHHTTTTTTSCC
T ss_pred HHHcCCCeeEEEEeCCCHHHHHHHHHHHH--H-h-----------------cCCCCCCcEEEeeHHHHHhhHHHhhcCCc
Confidence 999875 666666654332 2 1122210 0 0 00123578999999999999888999999
Q ss_pred eEEEecccccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccc---------
Q 003450 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN--------- 500 (819)
Q Consensus 430 ~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~--------- 500 (819)
++||+||||++||..++.++++..+.+.++|+|||||++|++.|||++++|++|+.+++...|...|....
T Consensus 194 ~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~ 273 (644)
T 1z3i_X 194 GLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADAS 273 (644)
T ss_dssp CEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCC
T ss_pred cEEEEECceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999885321
Q ss_pred ------hHHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHh-cCCCcchHHHHH
Q 003450 501 ------QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTR-RGGAQISLINVV 573 (819)
Q Consensus 501 ------~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~-~~~~~~~~~~~~ 573 (819)
....+..|+.++.++++||++.++...||++.+.+++|+||+.|+++|+.++......... .+......+..+
T Consensus 274 ~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l 353 (644)
T 1z3i_X 274 DKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSI 353 (644)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHH
Confidence 1245778999999999999999999999999999999999999999999988764322111 122334577889
Q ss_pred HHHHHhcCCCcccCCC----CCCccCcHH-------HHHHhhhcCchHHHHHHHHHHHHh-cCceEEEEecchhHHHHHH
Q 003450 574 MELRKLCCHPYMLEGV----EPDIEDTNE-------SFKQLLESSGKLQLLDKMMVKLKE-QGHRVLIYSQFQHMLDLLE 641 (819)
Q Consensus 574 ~~lr~~~~hp~l~~~~----~~~~~~~~~-------~~~~l~~~s~Kl~~l~~ll~~l~~-~g~kvlIFs~~~~~ld~L~ 641 (819)
+.||++|+||+++... ......... ........|+|+..|..++..+.. .++|+||||+++.++++|+
T Consensus 354 ~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~ 433 (644)
T 1z3i_X 354 TSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFE 433 (644)
T ss_dssp HHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHH
Confidence 9999999999986310 000000000 000012468999999999998874 5899999999999999999
Q ss_pred HHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhc
Q 003450 642 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (819)
Q Consensus 642 ~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~ 721 (819)
++|...|+++.+++|+++..+|++++++|++++...++||+||++||+||||++|++||+||++|||..+.||+||+||+
T Consensus 434 ~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~ 513 (644)
T 1z3i_X 434 KLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD 513 (644)
T ss_dssp HHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSST
T ss_pred HHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhc
Confidence 99999999999999999999999999999998777778999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEEeCCCHHHHHHHHHHHhhhhHHHHhchh
Q 003450 722 GQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRL 760 (819)
Q Consensus 722 Gq~~~V~v~~li~~~TvEe~i~~~~~~K~~l~~~v~~~~ 760 (819)
||+++|.||+|++.+|+||+|++++..|..+.+.++++.
T Consensus 514 Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~ 552 (644)
T 1z3i_X 514 GQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEE 552 (644)
T ss_dssp TCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCS
T ss_pred CCCCceEEEEEEECCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999998764
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1e-67 Score=606.94 Aligned_cols=438 Identities=31% Similarity=0.592 Sum_probs=380.0
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEecCcchHHHHHHHHHHc
Q 003450 278 PEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWA 356 (819)
Q Consensus 278 p~~~~~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~-~~~~LIv~P~~ll~qW~~e~~~~~ 356 (819)
|..+. .+|+|||.+|++|+...+..++++||+|+||+|||+++++++..+...+ .+++|||||.+++.||.+||.+|+
T Consensus 31 p~~~~-~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 31 PYNIK-ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKFA 109 (500)
T ss_dssp CCSCS-SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHHHHHHHHHHHC
T ss_pred Chhhh-ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHHHHHHHHHHHHHHC
Confidence 44333 6899999999999988888899999999999999999999999887554 459999999999999999999999
Q ss_pred CCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecc
Q 003450 357 PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDE 436 (819)
Q Consensus 357 p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDE 436 (819)
|++++.+++|.... .....++|+|+||+++..+.. +....|++||+||
T Consensus 110 ~~~~v~~~~g~~~~-------------------------------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDE 157 (500)
T 1z63_A 110 PHLRFAVFHEDRSK-------------------------------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDE 157 (500)
T ss_dssp TTSCEEECSSSTTS-------------------------------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEET
T ss_pred CCceEEEEecCchh-------------------------------ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeC
Confidence 99999998887521 012467899999999987654 6677999999999
Q ss_pred cccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhcc---chHHHHHHHHHHHh
Q 003450 437 GHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---NQEEQISRLHRMLA 513 (819)
Q Consensus 437 aH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~l~ 513 (819)
||+++|..++.++++..+.+.++|+|||||++|++.|+|++++|++|+.+++...|.+.|... ........|+..+.
T Consensus 158 aH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~ 237 (500)
T 1z63_A 158 AQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIIS 237 (500)
T ss_dssp GGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHT
T ss_pred ccccCCHhHHHHHHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998887642 23456678999999
Q ss_pred hHHHHHhhhh--hhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHhcCCCcccCCC
Q 003450 514 PHLLRRVKKD--VMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGG--AQISLINVVMELRKLCCHPYMLEGV 589 (819)
Q Consensus 514 ~~~lrr~k~d--v~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~--~~~~~~~~~~~lr~~~~hp~l~~~~ 589 (819)
++++||++.+ +...+|++.+..+.++|++.|+..|+.+.......+....+ ....++..++.+|++|+||.++...
T Consensus 238 ~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~ 317 (500)
T 1z63_A 238 PFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGG 317 (500)
T ss_dssp TTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCS
T ss_pred hHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCc
Confidence 9999999976 66789999999999999999999999887765433322111 1224677889999999999987643
Q ss_pred CCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhC-CCeEEEEeccCChHHHHHHHH
Q 003450 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRID 668 (819)
Q Consensus 590 ~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~-g~~~~~l~G~~~~~~R~~~i~ 668 (819)
.. ....++|+..+.+++..+...|+|+||||+++.+++.|.+.|... |+++.+++|+++..+|+++++
T Consensus 318 ~~-----------~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~ 386 (500)
T 1z63_A 318 EQ-----------SVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIIS 386 (500)
T ss_dssp CC-----------CSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHH
T ss_pred cc-----------hhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHH
Confidence 32 234789999999999999999999999999999999999999875 999999999999999999999
Q ss_pred HhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 003450 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (819)
Q Consensus 669 ~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~~ 748 (819)
+|++++... ++|++|+++|+||||++|++||+||++|||..+.||+||++|+||+++|.||+|++.+|+||+|++++..
T Consensus 387 ~F~~~~~~~-vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~ 465 (500)
T 1z63_A 387 KFQNNPSVK-FIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAF 465 (500)
T ss_dssp HHHHCTTCC-CCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTT
T ss_pred HhcCCCCCC-EEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHH
Confidence 999864433 4799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHhchh
Q 003450 749 KMVLEHLVVGRL 760 (819)
Q Consensus 749 K~~l~~~v~~~~ 760 (819)
|..+.+.++++.
T Consensus 466 K~~l~~~~~~~~ 477 (500)
T 1z63_A 466 KRSLFKDIISSG 477 (500)
T ss_dssp CSSSSSSGGGST
T ss_pred HHHHHHHHhhcC
Confidence 999999998764
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.6e-49 Score=483.46 Aligned_cols=420 Identities=19% Similarity=0.251 Sum_probs=321.9
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEecCcchHHHHHHHHHHcCCCeEE
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNVV 362 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~-~~~~LIv~P~~ll~qW~~e~~~~~p~~~v~ 362 (819)
.+|+|||.+++.|+... .+.++||+|+||+|||+++++++..+...+ .+++|||||.+++.||..||.+++ ++++.
T Consensus 152 ~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~v~ 228 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRF-NLRFA 228 (968)
T ss_dssp SCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHHHHHHHHHHHS-CCCCE
T ss_pred CCCcHHHHHHHHHHHHh--cCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHHHHHHHHHHHHh-CCCEE
Confidence 67999999999998653 367899999999999999999998887654 459999999999999999998888 78888
Q ss_pred EEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc---cccCCccceEEEeccccc
Q 003450 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQCMIVDEGHR 439 (819)
Q Consensus 363 ~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~---~~l~~~~~~~lIvDEaH~ 439 (819)
+++|.......... ......++|+|+||+++..+. ..+...+|++|||||||+
T Consensus 229 v~~~~~~~~~~~~~------------------------~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~ 284 (968)
T 3dmq_A 229 LFDDERYAEAQHDA------------------------YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHH 284 (968)
T ss_dssp ECCHHHHHHHHHTT------------------------CSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSC
T ss_pred EEccchhhhhhhhc------------------------ccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHh
Confidence 88776543321100 111246789999999997653 335567899999999999
Q ss_pred ccCcccH---HHHHHHhc--ccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHH----------
Q 003450 440 LKNKDSK---LFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ---------- 504 (819)
Q Consensus 440 ~kn~~s~---~~~~l~~l--~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~---------- 504 (819)
++|..+. .++.+..+ .++++|+|||||++|++.|+|++++|++|+.|++...|...+........
T Consensus 285 ~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~ 364 (968)
T 3dmq_A 285 LVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNK 364 (968)
T ss_dssp CCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCC
T ss_pred hcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCC
Confidence 9987654 47778777 67889999999999999999999999999999999999877543211000
Q ss_pred ------------------------------------HHHHHHHHh-----hHHHHHhhhhhhhcCCCceEEEEEecCCHH
Q 003450 505 ------------------------------------ISRLHRMLA-----PHLLRRVKKDVMKELPPKKELILRVELSSK 543 (819)
Q Consensus 505 ------------------------------------~~~l~~~l~-----~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~ 543 (819)
...+..++. ..++|+++..+ ..+|......+.+++++.
T Consensus 365 ~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l~~~~~ 443 (968)
T 3dmq_A 365 LSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKLPLPTQ 443 (968)
T ss_dssp CCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEECCCHH
T ss_pred CCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhh-cccChhheEeeecCCCHH
Confidence 001111111 11222223333 368888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCccc-CCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHh
Q 003450 544 QKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML-EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKE 622 (819)
Q Consensus 544 q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~-~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~ 622 (819)
+...|...... . ...... . .... +.+|... ...... .......+.|+..|.+++.. .
T Consensus 444 ~~~~~~~~~~~------~-~~~~~~-~----~~~~-~l~pe~~~~~l~~~-------~~~~~~~~~K~~~L~~ll~~--~ 501 (968)
T 3dmq_A 444 YQTAIKVSGIM------G-ARKSAE-D----RARD-MLYPERIYQEFEGD-------NATWWNFDPRVEWLMGYLTS--H 501 (968)
T ss_dssp HHHHHHHHHHT------T-CCSSGG-G----GTHH-HHCSGGGTTTTTSS-------SCCTTTTSHHHHHHHHHHHH--T
T ss_pred HHHHHHHHhhh------h-hhhhhH-H----HHhh-hcChHHHHHHhhhh-------hhcccCccHHHHHHHHHHHh--C
Confidence 88888643211 0 000000 0 0011 1122211 111110 01224568899999999987 5
Q ss_pred cCceEEEEecchhHHHHHHHHHhh-CCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEE
Q 003450 623 QGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (819)
Q Consensus 623 ~g~kvlIFs~~~~~ld~L~~~L~~-~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~ 701 (819)
.+.++||||++..+++.|.+.|.. .|+++..++|+++..+|+++++.|+++++ .+.+|++|+++++|||++.+++||+
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~-~~~vLvaT~v~~~GlDl~~~~~VI~ 580 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDT-GAQVLLCSEIGSEGRNFQFASHMVM 580 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTS-SCEEEECSCCTTCSSCCTTCCEEEC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCC-cccEEEecchhhcCCCcccCcEEEE
Confidence 688999999999999999999984 69999999999999999999999998653 2458999999999999999999999
Q ss_pred eCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhhHH
Q 003450 702 YDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEH 754 (819)
Q Consensus 702 ~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~~K~~l~~ 754 (819)
||++|||..+.|++||++|+||++.|.||++++.+|+|++|++...+|..+..
T Consensus 581 ~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~ 633 (968)
T 3dmq_A 581 FDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFE 633 (968)
T ss_dssp SSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSS
T ss_pred ecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCcee
Confidence 99999999999999999999999999999999999999999999998887653
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.3e-44 Score=413.64 Aligned_cols=425 Identities=14% Similarity=0.177 Sum_probs=290.3
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHc--CCCe
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQMN 360 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~--p~~~ 360 (819)
.+|+|||.+++.++. .+ ++||+++||+|||+++++++..+.....+++|||||. +++.||.+++.+|+ |...
T Consensus 8 ~~l~~~Q~~~i~~~~----~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~ 82 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCK----ET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (494)
T ss_dssp HCCCHHHHHHHHHGG----GS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CCccHHHHHHHHHHh----hC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhh
Confidence 479999999999873 33 9999999999999999999887765445699999997 89999999999998 5569
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhccc--ccCCccceEEEecccc
Q 003450 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDEGH 438 (819)
Q Consensus 361 v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~lIvDEaH 438 (819)
+..++|..........+ ..++|+|+||+.+..... .+...+|++||+||||
T Consensus 83 v~~~~g~~~~~~~~~~~---------------------------~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 135 (494)
T 1wp9_A 83 IVALTGEKSPEERSKAW---------------------------ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAH 135 (494)
T ss_dssp EEEECSCSCHHHHHHHH---------------------------HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGG
T ss_pred eEEeeCCcchhhhhhhc---------------------------cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCc
Confidence 99999987654322111 257899999999976432 4556689999999999
Q ss_pred cccCcccH--HHHHHHh-cccCcEEEEeCCCCCCChhHHHhhhcccCCCCC---CChHHHHHHHh--------ccchHHH
Q 003450 439 RLKNKDSK--LFSSLKQ-YSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKF---GSLEEFQEEFK--------DINQEEQ 504 (819)
Q Consensus 439 ~~kn~~s~--~~~~l~~-l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~---~~~~~f~~~~~--------~~~~~~~ 504 (819)
++++..+. ....+.. ....++++|||||. ++..++..++.++..... .....+...|. .......
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (494)
T 1wp9_A 136 RAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEI 214 (494)
T ss_dssp GCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHH
T ss_pred ccCCCCcHHHHHHHHHhcCCCCeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHH
Confidence 99875332 2222222 35678999999999 677777777776654321 11111111111 1122355
Q ss_pred HHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhc----------------------
Q 003450 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRR---------------------- 562 (819)
Q Consensus 505 ~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~---------------------- 562 (819)
...+...+.+.+.++.+......+..... ..++.......... ....+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (494)
T 1wp9_A 215 YKEVRKLLREMLRDALKPLAETGLLESSS----PDIPKKEVLRAGQI---INEEMAKGNHDLRGLLLYHAMALKLHHAIE 287 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCC----TTSCHHHHHHHHHH---HHHHHTTTCCSTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccC----CCcchhHHHHHHHH---HHHHhhccccchhhHHHHHHHHHHHHHHHH
Confidence 66788888888888888665544332211 11222221111110 00111000
Q ss_pred ---CCCcchHHHHHHHHHHhcCCCcccCCCCCCccCcHHHH-------HHhhhcCchHHHHHHHHHHHH--hcCceEEEE
Q 003450 563 ---GGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESF-------KQLLESSGKLQLLDKMMVKLK--EQGHRVLIY 630 (819)
Q Consensus 563 ---~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~~~~~-------~~l~~~s~Kl~~l~~ll~~l~--~~g~kvlIF 630 (819)
......+...+..+...+.|+................. ......++|+..|.++|.... ..++++|||
T Consensus 288 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF 367 (494)
T 1wp9_A 288 LLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVF 367 (494)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEE
Confidence 01111233333334333333110000000000000000 111157889999999999877 468999999
Q ss_pred ecchhHHHHHHHHHhhCCCeEEEEec--------cCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEe
Q 003450 631 SQFQHMLDLLEDYLTFKKWQYERIDG--------KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIY 702 (819)
Q Consensus 631 s~~~~~ld~L~~~L~~~g~~~~~l~G--------~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~ 702 (819)
|+++.+++.|.++|...|+++..++| +++..+|++++++|+++... +|++|+++++|||++++++||+|
T Consensus 368 ~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~---vLv~T~~~~~Gldl~~~~~Vi~~ 444 (494)
T 1wp9_A 368 TNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN---VLVATSVGEEGLDVPEVDLVVFY 444 (494)
T ss_dssp CSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS---EEEECGGGGGGGGSTTCCEEEES
T ss_pred EccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCce---EEEECCccccCCCchhCCEEEEe
Confidence 99999999999999999999999999 99999999999999976533 79999999999999999999999
Q ss_pred CCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhhHH
Q 003450 703 DSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEH 754 (819)
Q Consensus 703 d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~~K~~l~~ 754 (819)
|++|||..+.||+||++|.|| +.+|+|++++|+||.++..+.+|..+++
T Consensus 445 d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 445 EPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp SCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred CCCCCHHHHHHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998 8899999999999999999988877653
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=6e-42 Score=389.81 Aligned_cols=376 Identities=17% Similarity=0.225 Sum_probs=261.6
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCe-
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMN- 360 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~- 360 (819)
+.+|+|||.++++++ ..++++||+++||+|||++++.++..+ .+++|||||. +++.||.++|.+| +..
T Consensus 91 ~~~l~~~Q~~ai~~i----~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~~--~~~~ 160 (472)
T 2fwr_A 91 EISLRDYQEKALERW----LVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGIF--GEEY 160 (472)
T ss_dssp CCCBCHHHHHHHHHH----TTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGGG--CGGG
T ss_pred CCCcCHHHHHHHHHH----HhcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHhC--CCcc
Confidence 468999999999876 455679999999999999999888876 3589999998 9999999999994 566
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccccc
Q 003450 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL 440 (819)
Q Consensus 361 v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~~ 440 (819)
+.+++|... ...+|+|+||+.+......+. .+|++|||||||++
T Consensus 161 v~~~~g~~~-----------------------------------~~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~ 204 (472)
T 2fwr_A 161 VGEFSGRIK-----------------------------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHL 204 (472)
T ss_dssp EEEBSSSCB-----------------------------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGT
T ss_pred eEEECCCcC-----------------------------------CcCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCC
Confidence 777776532 135799999999977655443 35899999999999
Q ss_pred cCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHHHHHh
Q 003450 441 KNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRV 520 (819)
Q Consensus 441 kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~lrr~ 520 (819)
.+.... ..+..+...++++|||||..++..+. .+...+.+.+.++.
T Consensus 205 ~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~~--------------------------------~l~~~~~~~~~~~~ 250 (472)
T 2fwr_A 205 PAESYV--QIAQMSIAPFRLGLTATFEREDGRHE--------------------------------ILKEVVGGKVFELF 250 (472)
T ss_dssp TSTTTH--HHHHTCCCSEEEEEESCCCCTTSGGG--------------------------------SHHHHTCCEEEECC
T ss_pred CChHHH--HHHHhcCCCeEEEEecCccCCCCHHH--------------------------------HHHHHhCCeEeecC
Confidence 876543 35556678899999999986552220 01112222222222
Q ss_pred hhhhh-hcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccCcHHH
Q 003450 521 KKDVM-KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNES 599 (819)
Q Consensus 521 k~dv~-~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~~~~ 599 (819)
..++. ..+++.....+.+++++.+...|..+.......+........... .+.+.....................
T Consensus 251 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (472)
T 2fwr_A 251 PDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAE----DFNKIVMASGYDERAYEALRAWEEA 326 (472)
T ss_dssp HHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCS----SSTTTTTTTCCSSSSSTTTHHHHHH
T ss_pred HHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchh----hHHHHHHHhccCHHHHHHHHHHHHH
Confidence 22222 236777777889999999999988766544322211100000000 0000000000000000000001112
Q ss_pred HHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEE
Q 003450 600 FKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFC 679 (819)
Q Consensus 600 ~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v 679 (819)
.......+.|+..|.+++.. ..++++||||++...++.|.+.|. +..++|+++..+|++++++|+++...
T Consensus 327 ~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~--- 396 (472)
T 2fwr_A 327 RRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFR--- 396 (472)
T ss_dssp HHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCS---
T ss_pred HHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCC---
Confidence 22335578899999999987 568999999999999999999985 44688999999999999999885543
Q ss_pred EEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCC-CcEEEEEEEeCCCHHHHHHHHHHHhhhh
Q 003450 680 FLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT-NKVMIFRLITRGSIEERMMQMTKKKMVL 752 (819)
Q Consensus 680 ~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~-~~V~v~~li~~~TvEe~i~~~~~~K~~l 752 (819)
+|++|+++++|+|++.+++||++|++||+..+.|++||++|.||. +.|.||+|++++|+||++.++..+|.++
T Consensus 397 vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~ 470 (472)
T 2fwr_A 397 AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKG 470 (472)
T ss_dssp BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC--------------
T ss_pred EEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHhhcc
Confidence 689999999999999999999999999999999999999999998 7999999999999999999888776654
No 7
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=4.3e-41 Score=349.77 Aligned_cols=233 Identities=27% Similarity=0.446 Sum_probs=181.8
Q ss_pred HHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHhcCCCcccCCCCCCc
Q 003450 516 LLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGA--QISLINVVMELRKLCCHPYMLEGVEPDI 593 (819)
Q Consensus 516 ~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~--~~~~~~~~~~lr~~~~hp~l~~~~~~~~ 593 (819)
-+||+|+++..+||++.+.+++|+||+.|+++|+.++......+....+. ...+++.++.||++|+||+++....
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~~--- 89 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE--- 89 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSC---
T ss_pred cccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCCc---
Confidence 57999999999999999999999999999999999998776655432211 2357788999999999999987332
Q ss_pred cCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhC-CCeEEEEeccCChHHHHHHHHHhcC
Q 003450 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFNA 672 (819)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~-g~~~~~l~G~~~~~~R~~~i~~F~~ 672 (819)
.....++|+..|.++|..+.+.|+|+||||+++.+++.|.++|... |+++.+++|+++..+|++++++|++
T Consensus 90 --------~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~ 161 (271)
T 1z5z_A 90 --------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN 161 (271)
T ss_dssp --------CCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHH
T ss_pred --------cccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcC
Confidence 1245799999999999999889999999999999999999999885 9999999999999999999999998
Q ss_pred CCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhh
Q 003450 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVL 752 (819)
Q Consensus 673 ~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~~K~~l 752 (819)
++... +||++|+++|+||||++|++||+||+||||..+.||+||+||+||+++|.||+|++.+|+||+|++++..|..+
T Consensus 162 ~~~~~-v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l 240 (271)
T 1z5z_A 162 NPSVK-FIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSL 240 (271)
T ss_dssp CTTCC-EEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHH
T ss_pred CCCCC-EEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHH
Confidence 74433 58999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchh
Q 003450 753 EHLVVGRL 760 (819)
Q Consensus 753 ~~~v~~~~ 760 (819)
.+.+++..
T Consensus 241 ~~~~~~~~ 248 (271)
T 1z5z_A 241 FKDIISSG 248 (271)
T ss_dssp HTTGGGGT
T ss_pred HHHHHccC
Confidence 99999763
No 8
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=4.4e-37 Score=357.60 Aligned_cols=429 Identities=14% Similarity=0.168 Sum_probs=218.0
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC----CCceEEEecC-cchHHHHHHHHHHcC-
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPL-STLRNWEREFATWAP- 357 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~----~~~~LIv~P~-~ll~qW~~e~~~~~p- 357 (819)
.+|+|||.+++.++ ..++++|++++||+|||++++..+....... .+++|||+|. .++.||.+++.++++
T Consensus 6 ~~~~~~Q~~~i~~~----~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 57999999999987 4578999999999999999888777665432 4589999997 899999999999986
Q ss_pred -CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhccc--cc-CCccceEEE
Q 003450 358 -QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SL-KPIKWQCMI 433 (819)
Q Consensus 358 -~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l-~~~~~~~lI 433 (819)
++.+..++|+.......... ...++|+|+||+.+..... .+ ....|++||
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~--------------------------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vV 135 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKV--------------------------IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMI 135 (556)
T ss_dssp GTCCEEECCCC-----CHHHH--------------------------HHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEE
T ss_pred cCceEEEEeCCCCcchhHHHh--------------------------hCCCCEEEECHHHHHHHHHhCcccccccCCEEE
Confidence 78899999887543221111 1357899999999975432 23 345789999
Q ss_pred ecccccccCcccHHHHHHHh-c--------ccCcEEEEeCCCCCCChhHH-------HhhhcccCCCCC---C-ChHHHH
Q 003450 434 VDEGHRLKNKDSKLFSSLKQ-Y--------STRHRVLLTGTPLQNNLDEL-------FMLMHFLDAGKF---G-SLEEFQ 493 (819)
Q Consensus 434 vDEaH~~kn~~s~~~~~l~~-l--------~~~~~llLTgTP~~n~~~el-------~~ll~~l~~~~~---~-~~~~f~ 493 (819)
|||||++.+... ....+.. + ...++++|||||.+++..++ ..+...++...+ . ....+.
T Consensus 136 iDEah~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~ 214 (556)
T 4a2p_A 136 FDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQ 214 (556)
T ss_dssp EETGGGCSTTSH-HHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHH
T ss_pred EECCcccCCcch-HHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHH
Confidence 999999987654 2221111 1 23578999999988764333 233333332211 1 122222
Q ss_pred HHHhccc----------h---HHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 003450 494 EEFKDIN----------Q---EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILT 560 (819)
Q Consensus 494 ~~~~~~~----------~---~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~ 560 (819)
..+.... . ......+...+..+ ..++.. +..... .-...+.. ..|............
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~-~~~~~~g~---~~~~~~~~~~~~~~~ 284 (556)
T 4a2p_A 215 RFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEAL-----MRTIYS-VDTLSQ-NSKKDFGT---QNYEHWIVVTQRKCR 284 (556)
T ss_dssp HHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHH-----HHHHCC-----------CCCSS---HHHHHHHHHHHHHHH
T ss_pred hcCCCCceEEEEcCCCcCChHHHHHHHHHHHHHHH-----HHHHhh-hhhhhc-ccccccch---hhHHHHHHHHHHHHH
Confidence 2211000 0 00011111111111 111110 000000 00001111 111111111000000
Q ss_pred hcC-CCc-------chHHHHHHHHHHhcCCCcccCCC------------------CCCccCcHHHH--------------
Q 003450 561 RRG-GAQ-------ISLINVVMELRKLCCHPYMLEGV------------------EPDIEDTNESF-------------- 600 (819)
Q Consensus 561 ~~~-~~~-------~~~~~~~~~lr~~~~hp~l~~~~------------------~~~~~~~~~~~-------------- 600 (819)
... ... ..+......+++. ++....... ...........
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 363 (556)
T 4a2p_A 285 LLQLEDKEEESRICRALFICTEHLRKY-NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIAL 363 (556)
T ss_dssp HC---CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHH
T ss_pred hhcccccchhHHHHHHHHHHHHHHHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhh
Confidence 000 000 0000000011100 000000000 00000000000
Q ss_pred -HHhhhcCchHHHHHHHHHHHH--hcCceEEEEecchhHHHHHHHHHhhC------------CCeEEEEeccCChHHHHH
Q 003450 601 -KQLLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFK------------KWQYERIDGKVGGAERQI 665 (819)
Q Consensus 601 -~~l~~~s~Kl~~l~~ll~~l~--~~g~kvlIFs~~~~~ld~L~~~L~~~------------g~~~~~l~G~~~~~~R~~ 665 (819)
......++|+..|.++|.... ..++|+||||+++.+++.|.++|... |..+..++|+++..+|++
T Consensus 364 ~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~ 443 (556)
T 4a2p_A 364 SKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKG 443 (556)
T ss_dssp HHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------
T ss_pred ccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHH
Confidence 000124889999999998776 56789999999999999999999765 556666777899999999
Q ss_pred HHHHhcC-CCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHH
Q 003450 666 RIDRFNA-KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQ 744 (819)
Q Consensus 666 ~i~~F~~-~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~ 744 (819)
++++|++ +... +||+|+++++|||++++++||+||+||||..++||+|| +| .+++.+|.|++.++++++ ..
T Consensus 444 ~~~~F~~~g~~~---vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR---~~~g~~~~l~~~~~~~~~-~~ 515 (556)
T 4a2p_A 444 VLDAFKTSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EK 515 (556)
T ss_dssp ----------CC---EEEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HH
T ss_pred HHHHhcccCceE---EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEEeCcchHHH-HH
Confidence 9999987 4333 79999999999999999999999999999999999999 55 477889999999999998 66
Q ss_pred HHHHhhhhHHHHhchhhh
Q 003450 745 MTKKKMVLEHLVVGRLKA 762 (819)
Q Consensus 745 ~~~~K~~l~~~v~~~~~~ 762 (819)
....|..+...++..+..
T Consensus 516 ~~~~k~~~~~~~i~~i~~ 533 (556)
T 4a2p_A 516 CNRYKEEMMNKAVEKIQK 533 (556)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHhhc
Confidence 677777777777665443
No 9
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.7e-37 Score=377.60 Aligned_cols=407 Identities=14% Similarity=0.162 Sum_probs=225.7
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC----CCceEEEecC-cchHHHHHHHHHHcC
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPL-STLRNWEREFATWAP 357 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~----~~~~LIv~P~-~ll~qW~~e~~~~~p 357 (819)
..+|+|||.+++.++ ..++++|++++||+|||++++..+....... .+++|||+|+ .++.||.+++.++++
T Consensus 246 ~~~~r~~Q~~ai~~i----l~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH----HcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 468999999999988 4578999999999999999888887665543 4589999996 688999999999986
Q ss_pred --CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhccc--cc-CCccceEE
Q 003450 358 --QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SL-KPIKWQCM 432 (819)
Q Consensus 358 --~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l-~~~~~~~l 432 (819)
++.+..++|+...+..... ....++|+|+||+++..... .+ ....|++|
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~--------------------------~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~li 375 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEK--------------------------VIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375 (936)
T ss_dssp TTTCCEEEECCC-----CCHH--------------------------HHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEE
T ss_pred ccCceEEEEECCcchhhHHHH--------------------------hccCCCEEEecHHHHHHHHHcCccccccCCCEE
Confidence 7899999998754321111 01357899999999975432 22 33468999
Q ss_pred EecccccccCcccHHHHHHHhc---------ccCcEEEEeCCCCCCChhHHHhhhc-------ccCCCCCC----ChHHH
Q 003450 433 IVDEGHRLKNKDSKLFSSLKQY---------STRHRVLLTGTPLQNNLDELFMLMH-------FLDAGKFG----SLEEF 492 (819)
Q Consensus 433 IvDEaH~~kn~~s~~~~~l~~l---------~~~~~llLTgTP~~n~~~el~~ll~-------~l~~~~~~----~~~~f 492 (819)
||||||++.+..+ ....+..+ ....+++|||||.+++..++...++ .++...+. ....+
T Consensus 376 ViDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l 454 (936)
T 4a2w_A 376 IFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQEL 454 (936)
T ss_dssp EEETGGGCSTTCH-HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred EEECccccCCCcc-HHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHH
Confidence 9999999988654 22222221 2257899999998877544443222 22221110 11111
Q ss_pred HHHHhccchHHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEec--CCHHHHHHHHHHHHHHHHHHHh---------
Q 003450 493 QEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVE--LSSKQKEYYKAILTRNYQILTR--------- 561 (819)
Q Consensus 493 ~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~--ls~~q~~~y~~i~~~~~~~l~~--------- 561 (819)
.. .++......+.+. +.+.....+..+.......+..
T Consensus 455 ~~--------------------------------~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~ 502 (936)
T 4a2w_A 455 QR--------------------------------FMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQ 502 (936)
T ss_dssp HH--------------------------------HSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HH--------------------------------hccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 11 1122222222222 3333333333222221111110
Q ss_pred ------------------------cC-CCc-------chHHHHHHHHHHhcCCCcccCCCC------------------C
Q 003450 562 ------------------------RG-GAQ-------ISLINVVMELRKLCCHPYMLEGVE------------------P 591 (819)
Q Consensus 562 ------------------------~~-~~~-------~~~~~~~~~lr~~~~hp~l~~~~~------------------~ 591 (819)
.. ... ..+......+++. ++...+.... .
T Consensus 503 ~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~-~~al~i~~~~~~~~~~~~l~~~~~~~~~~ 581 (936)
T 4a2w_A 503 NSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY-NDALIISEDARIIDALSYLTEFFTNVKNG 581 (936)
T ss_dssp ----CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred ccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH-HHHHhhhcchhHHHHHHHHHHHHHHHhhc
Confidence 00 000 0000001111111 0000000000 0
Q ss_pred CccCcHHHH-----------HH----hhhcCchHHHHHHHHHHHH--hcCceEEEEecchhHHHHHHHHHhhC-------
Q 003450 592 DIEDTNESF-----------KQ----LLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFK------- 647 (819)
Q Consensus 592 ~~~~~~~~~-----------~~----l~~~s~Kl~~l~~ll~~l~--~~g~kvlIFs~~~~~ld~L~~~L~~~------- 647 (819)
........+ .. ....++|+..|.++|.... ..++|+||||+++.+++.|.++|...
T Consensus 582 ~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik 661 (936)
T 4a2w_A 582 PYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIK 661 (936)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccc
Confidence 000000000 00 0115889999999998764 45789999999999999999999876
Q ss_pred -----CCeEEEEeccCChHHHHHHHHHhcC-CCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhc
Q 003450 648 -----KWQYERIDGKVGGAERQIRIDRFNA-KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (819)
Q Consensus 648 -----g~~~~~l~G~~~~~~R~~~i~~F~~-~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~ 721 (819)
|..+..++|+++..+|++++++|++ +.. .+||+|+++++|||++++++||+||++|||..++||+|| +|
T Consensus 662 ~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~---~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR- 736 (936)
T 4a2w_A 662 PGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDN---RLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR- 736 (936)
T ss_dssp CEEC----------------------------CC---SEEEEECC------CCCCSEEEEESCCSCSHHHHCC-------
T ss_pred eeEEecCCCcccCCCCCHHHHHHHHHHhhccCCe---eEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CC-
Confidence 6666677888999999999999987 433 379999999999999999999999999999999999999 55
Q ss_pred CCCCcEEEEEEEeCCCHHHHHHHHHHHhhhhHHHHhchhh
Q 003450 722 GQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK 761 (819)
Q Consensus 722 Gq~~~V~v~~li~~~TvEe~i~~~~~~K~~l~~~v~~~~~ 761 (819)
.+++.+|.|++.+|++++.+ ....|..+...++..+.
T Consensus 737 --~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~~l~ 773 (936)
T 4a2w_A 737 --AAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVEKIQ 773 (936)
T ss_dssp ----CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred --CCCCEEEEEEeCCCHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 47778899999999999866 55566666666655443
No 10
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4.8e-37 Score=370.06 Aligned_cols=408 Identities=14% Similarity=0.173 Sum_probs=224.9
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC----CCceEEEecC-cchHHHHHHHHHHcC
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPL-STLRNWEREFATWAP 357 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~----~~~~LIv~P~-~ll~qW~~e~~~~~p 357 (819)
..+|+|||.+++.++ ..++++|++++||+|||++++..+....... .+++|||||. .++.||.+++.++++
T Consensus 246 ~~~l~~~Q~~~i~~~----l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 246 TKKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp --CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHH----HhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 468999999999987 4678999999999999999888877665443 4599999996 688999999999987
Q ss_pred --CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhccc--cc-CCccceEE
Q 003450 358 --QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SL-KPIKWQCM 432 (819)
Q Consensus 358 --~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l-~~~~~~~l 432 (819)
++.+..++|+.......... ...++|+|+||+.+..... .+ ...+|++|
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~~~--------------------------~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~i 375 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVEKV--------------------------IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375 (797)
T ss_dssp GGTCCEEEECCC-----CHHHH--------------------------HHTCSEEEECHHHHHHHHHSSSCCCGGGCSEE
T ss_pred cCCceEEEEeCCcchhhhHHHh--------------------------hCCCCEEEEchHHHHHHHHhccccccccCCEE
Confidence 88999999987544322111 1357899999999975432 23 33468999
Q ss_pred EecccccccCcccHHHHHHHhc---------ccCcEEEEeCCCCCCChhHHHhhh-------cccCCCCCC----ChHHH
Q 003450 433 IVDEGHRLKNKDSKLFSSLKQY---------STRHRVLLTGTPLQNNLDELFMLM-------HFLDAGKFG----SLEEF 492 (819)
Q Consensus 433 IvDEaH~~kn~~s~~~~~l~~l---------~~~~~llLTgTP~~n~~~el~~ll-------~~l~~~~~~----~~~~f 492 (819)
||||||++.+..+ ....+..+ ...++++|||||.+++..++...+ ..++...+. ....+
T Consensus 376 ViDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l 454 (797)
T 4a2q_A 376 IFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQEL 454 (797)
T ss_dssp EETTGGGCSTTSH-HHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHH
T ss_pred EEECccccCCCcc-HHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHH
Confidence 9999999987654 22222111 235689999999887654433222 222221111 11111
Q ss_pred HHHHhccchHHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEec--CCHHHHHHHHHHHHHHHHHHHh---------
Q 003450 493 QEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVE--LSSKQKEYYKAILTRNYQILTR--------- 561 (819)
Q Consensus 493 ~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~--ls~~q~~~y~~i~~~~~~~l~~--------- 561 (819)
... ++......+.+. +.+.....+..+.......+..
T Consensus 455 ~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~ 502 (797)
T 4a2q_A 455 QRF--------------------------------MNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQ 502 (797)
T ss_dssp HHH--------------------------------SCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHh--------------------------------cCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhh
Confidence 111 111111112222 2222222222222111111100
Q ss_pred ------------------------cC-CCc-------chHHHHHHHHHHhcCCCccc-CCC-----------------CC
Q 003450 562 ------------------------RG-GAQ-------ISLINVVMELRKLCCHPYML-EGV-----------------EP 591 (819)
Q Consensus 562 ------------------------~~-~~~-------~~~~~~~~~lr~~~~hp~l~-~~~-----------------~~ 591 (819)
.. ... ..+......+++.. +.... ... ..
T Consensus 503 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 581 (797)
T 4a2q_A 503 NSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYN-DALIISEDARIIDALSYLTEFFTNVKNG 581 (797)
T ss_dssp ----CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred hccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH-HHHhhhccccHHHHHHHHHHHHHHHhcc
Confidence 00 000 00001111111110 00000 000 00
Q ss_pred CccCcHHH---------------HHHhhhcCchHHHHHHHHHHHH--hcCceEEEEecchhHHHHHHHHHhhC-------
Q 003450 592 DIEDTNES---------------FKQLLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFK------- 647 (819)
Q Consensus 592 ~~~~~~~~---------------~~~l~~~s~Kl~~l~~ll~~l~--~~g~kvlIFs~~~~~ld~L~~~L~~~------- 647 (819)
........ .......++|+..|.++|.... ..++|+||||+++.+++.|.++|...
T Consensus 582 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~ 661 (797)
T 4a2q_A 582 PYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIK 661 (797)
T ss_dssp TCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCC
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCccccccc
Confidence 00000000 0000124889999999998754 55789999999999999999999763
Q ss_pred -----CCeEEEEeccCChHHHHHHHHHhcC-CCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhc
Q 003450 648 -----KWQYERIDGKVGGAERQIRIDRFNA-KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (819)
Q Consensus 648 -----g~~~~~l~G~~~~~~R~~~i~~F~~-~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~ 721 (819)
|..+..++|+++..+|++++++|++ +... +||+|+++++|||++++++||+||++|||..++||+|| +|.
T Consensus 662 ~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~---vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~ 737 (797)
T 4a2q_A 662 PGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA 737 (797)
T ss_dssp CEEC----------------------------CCS---EEEEECC-------CCCSEEEEESCCSCHHHHHTC-------
T ss_pred ceEEEecCCcccCCCCCHHHHHHHHHHhhccCCce---EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC
Confidence 6667778888999999999999987 4333 79999999999999999999999999999999999999 554
Q ss_pred CCCCcEEEEEEEeCCCHHHHHHHHHHHhhhhHHHHhchhhh
Q 003450 722 GQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKA 762 (819)
Q Consensus 722 Gq~~~V~v~~li~~~TvEe~i~~~~~~K~~l~~~v~~~~~~ 762 (819)
+++.+|.|++.++++++ ......|..+...++..+..
T Consensus 738 ---~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~~l~~ 774 (797)
T 4a2q_A 738 ---AGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEKIQK 774 (797)
T ss_dssp ----CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHHHHHT
T ss_pred ---CCceEEEEEeCCcHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 77889999999999998 66777777777777655443
No 11
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.8e-36 Score=352.29 Aligned_cols=437 Identities=15% Similarity=0.170 Sum_probs=238.4
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC----CCceEEEecC-cchHHHHHHHHHHcC-
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPL-STLRNWEREFATWAP- 357 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~----~~~~LIv~P~-~ll~qW~~e~~~~~p- 357 (819)
.+|+|||.+++.++ ..++++|++++||+|||++++..+....... .+++|||+|+ .++.||.+++.++++
T Consensus 3 ~~~~~~Q~~~i~~~----~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPA----KKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHH----hCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 57999999999987 4678999999999999999888777665432 4589999997 899999999999986
Q ss_pred -CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccc--c-CCccceEEE
Q 003450 358 -QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--L-KPIKWQCMI 433 (819)
Q Consensus 358 -~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~--l-~~~~~~~lI 433 (819)
++.+..++|+.......... ...++|+|+||+.+...... + ....|++||
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~--------------------------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vV 132 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQHI--------------------------IEDNDIIILTPQILVNNLNNGAIPSLSVFTLMI 132 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHHH--------------------------HHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEE
T ss_pred CCcEEEEEcCCCcchhhHHHH--------------------------hcCCCEEEECHHHHHHHHhcCcccccccCCEEE
Confidence 78899999887544221111 12578999999999764322 3 334689999
Q ss_pred ecccccccCcccHHHHHHHhc---------ccCcEEEEeCCCCCCChhHH-------HhhhcccCCCCCC----ChHHHH
Q 003450 434 VDEGHRLKNKDSKLFSSLKQY---------STRHRVLLTGTPLQNNLDEL-------FMLMHFLDAGKFG----SLEEFQ 493 (819)
Q Consensus 434 vDEaH~~kn~~s~~~~~l~~l---------~~~~~llLTgTP~~n~~~el-------~~ll~~l~~~~~~----~~~~f~ 493 (819)
|||||++.+..+........+ ...++++|||||.+++..++ ..+...++...+. ....+.
T Consensus 133 iDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~ 212 (555)
T 3tbk_A 133 FDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELE 212 (555)
T ss_dssp ETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHH
T ss_pred EECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHH
Confidence 999999987654222111111 22478999999998874333 3333444432211 111211
Q ss_pred HHHhcc----------chHHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCH---------------------
Q 003450 494 EEFKDI----------NQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSS--------------------- 542 (819)
Q Consensus 494 ~~~~~~----------~~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~--------------------- 542 (819)
..+... ........+...+.. ++....++...++..... ....+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 289 (555)
T 3tbk_A 213 QVVYKPQKISRKVASRTSNTFKCIISQLMKE--TEKLAKDVSEELGKLFQI-QNREFGTQKYEQWIVGVHKACSVFQMAD 289 (555)
T ss_dssp TTCCCCCEEEEECCCCSCCHHHHHHHHHHHH--HHHHHHTSCHHHHGGGGC-CSCCSSSHHHHHHHHHHHHHHHTCCCSS
T ss_pred hhcCCCceEEEEecCcccChHHHHHHHHHHH--HHHHHHHHHHhhhhhhhc-ccccccchhhhHHHHHHHHHhhhhhccc
Confidence 111000 000001111111110 111111111110000000 0000010
Q ss_pred --HHHHHHHHHHHHHHH------HHH-hcCCCcchHHHHHHHHHHhcCCCcccCC-------CCCCccCcHHHHHHhhhc
Q 003450 543 --KQKEYYKAILTRNYQ------ILT-RRGGAQISLINVVMELRKLCCHPYMLEG-------VEPDIEDTNESFKQLLES 606 (819)
Q Consensus 543 --~q~~~y~~i~~~~~~------~l~-~~~~~~~~~~~~~~~lr~~~~hp~l~~~-------~~~~~~~~~~~~~~l~~~ 606 (819)
.+...+..+...... .+. ............+..+-.-+.+..+... ..................
T Consensus 290 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (555)
T 3tbk_A 290 KEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNE 369 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcC
Confidence 000111111100000 000 0000000000000000000000000000 000000000000011124
Q ss_pred CchHHHHHHHHHHHHhc--CceEEEEecchhHHHHHHHHHhhCC------------CeEEEEeccCChHHHHHHHHHhcC
Q 003450 607 SGKLQLLDKMMVKLKEQ--GHRVLIYSQFQHMLDLLEDYLTFKK------------WQYERIDGKVGGAERQIRIDRFNA 672 (819)
Q Consensus 607 s~Kl~~l~~ll~~l~~~--g~kvlIFs~~~~~ld~L~~~L~~~g------------~~~~~l~G~~~~~~R~~~i~~F~~ 672 (819)
++|+..|.++|..+... ++++||||+++.+++.|.++|...| ..+..++|+++..+|++++++|++
T Consensus 370 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~ 449 (555)
T 3tbk_A 370 NPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRA 449 (555)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhc
Confidence 78999999999887654 4899999999999999999998763 455566679999999999999987
Q ss_pred -CCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHhhh
Q 003450 673 -KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMV 751 (819)
Q Consensus 673 -~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~~K~~ 751 (819)
+... +||+|+++++|||++++++||+||++|||..++||+|| |+.+.+.+|.|++.++.++. ..+...|..
T Consensus 450 ~g~~~---vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~~e~ 521 (555)
T 3tbk_A 450 SGDNN---ILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEK-EKANMIKEK 521 (555)
T ss_dssp --CCS---EEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHH-HHHHHHHHH
T ss_pred CCCee---EEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHH-HHHhhHHHH
Confidence 4433 79999999999999999999999999999999999999 55688999999999998887 455556666
Q ss_pred hHHHHhchhh
Q 003450 752 LEHLVVGRLK 761 (819)
Q Consensus 752 l~~~v~~~~~ 761 (819)
+.+..+..+.
T Consensus 522 ~~~~~~~~~~ 531 (555)
T 3tbk_A 522 IMNESILRLQ 531 (555)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 6666655443
No 12
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=100.00 E-value=4.7e-35 Score=302.08 Aligned_cols=212 Identities=23% Similarity=0.240 Sum_probs=167.1
Q ss_pred CCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHh---cCCCc-----chHHHHHHHHHHhcCCCccc-CCCCCCccCcHH
Q 003450 528 LPPKKELILRVELSSKQKEYYKAILTRNYQILTR---RGGAQ-----ISLINVVMELRKLCCHPYML-EGVEPDIEDTNE 598 (819)
Q Consensus 528 lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~---~~~~~-----~~~~~~~~~lr~~~~hp~l~-~~~~~~~~~~~~ 598 (819)
-|++.+++++++||+.|+++|+.++..+...+.+ ..+.. .++.+.+++||++||||||+ +...+......+
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~~~~~~ 99 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSLITRD 99 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSCSCSTT
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCccccccc
Confidence 3899999999999999999999999876655432 22211 35789999999999999998 444443333333
Q ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcE
Q 003450 599 SFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRF 678 (819)
Q Consensus 599 ~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~ 678 (819)
....++..|||+.+|.++|..+.+.|+|||||||++.++|+|+++|..+|++|.|++|+... .+++. ..+..+
T Consensus 100 ~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~-~~~k~------~~~~~~ 172 (328)
T 3hgt_A 100 VPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIK-SAAAA------NDFSCT 172 (328)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--------------CCSEE
T ss_pred hhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchh-hhhhc------ccCCce
Confidence 45667889999999999999999999999999999999999999999999999999999544 33222 133456
Q ss_pred EEEeccccccccCC-----cccCCEEEEeCCCCCcchH-HHHhHhhhhc--CCCCcEEEEEEEeCCCHHHHHHHHHH
Q 003450 679 CFLLSTRAGGLGIN-----LATADTVIIYDSDWNPHAD-LQAMARAHRL--GQTNKVMIFRLITRGSIEERMMQMTK 747 (819)
Q Consensus 679 v~L~st~a~~~Gin-----L~~a~~VI~~d~~wnp~~~-~Qa~gR~~R~--Gq~~~V~v~~li~~~TvEe~i~~~~~ 747 (819)
++|+ |++||.|+| +++||+||+||++|||+++ +|++.|+||+ ||+++|.||||++.+|+|+.++...+
T Consensus 173 i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~ 248 (328)
T 3hgt_A 173 VHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFGK 248 (328)
T ss_dssp EEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHHH
T ss_pred EEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHccC
Confidence 6666 678888886 7899999999999999998 9999999999 68899999999999999999998855
No 13
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.2e-34 Score=332.81 Aligned_cols=346 Identities=12% Similarity=0.122 Sum_probs=252.4
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHH--cCCCe
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATW--APQMN 360 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~--~p~~~ 360 (819)
.+|+|||.+++.++.. +++++|+++||+|||++++.++......+.+++|||||. .|+.||.++|.+| .|+..
T Consensus 112 ~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~ 187 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (510)
T ss_dssp ECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGG
T ss_pred CCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccc
Confidence 4799999999998743 478999999999999999888777665555599999997 7889999999998 55667
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccccc
Q 003450 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL 440 (819)
Q Consensus 361 v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~~ 440 (819)
+..++|....... .....+|+|+||+.+..... ....+|++|||||||++
T Consensus 188 v~~~~~~~~~~~~-----------------------------~~~~~~I~i~T~~~l~~~~~-~~~~~~~liIiDE~H~~ 237 (510)
T 2oca_A 188 IKKIGGGASKDDK-----------------------------YKNDAPVVVGTWQTVVKQPK-EWFSQFGMMMNDECHLA 237 (510)
T ss_dssp EEECGGGCCTTGG-----------------------------GCTTCSEEEEEHHHHTTSCG-GGGGGEEEEEEETGGGC
T ss_pred eEEEecCCccccc-----------------------------cccCCcEEEEeHHHHhhchh-hhhhcCCEEEEECCcCC
Confidence 7777765432210 12467899999999876532 22237899999999999
Q ss_pred cCcccHHHHHHHhc-ccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCCh-HHHHHHHhccchHHHHHHHHHHHhhHHHH
Q 003450 441 KNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSL-EEFQEEFKDINQEEQISRLHRMLAPHLLR 518 (819)
Q Consensus 441 kn~~s~~~~~l~~l-~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~-~~f~~~~~~~~~~~~~~~l~~~l~~~~lr 518 (819)
.+. .....+..+ ...++++||||| .+...+++.+..++++..+... ....
T Consensus 238 ~~~--~~~~il~~~~~~~~~l~lSATp-~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 289 (510)
T 2oca_A 238 TGK--SISSIISGLNNCMFKFGLSGSL-RDGKANIMQYVGMFGEIFKPVTTSKLM------------------------- 289 (510)
T ss_dssp CHH--HHHHHGGGCTTCCEEEEEESCG-GGCSSCHHHHHHHHCSEECCCCCC----------------------------
T ss_pred Ccc--cHHHHHHhcccCcEEEEEEeCC-CCCcccHHHhHHhhCCeEEeeCHHHHh-------------------------
Confidence 762 233444666 566899999999 4555556666555555432210 0000
Q ss_pred HhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccCcHH
Q 003450 519 RVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNE 598 (819)
Q Consensus 519 r~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~~~ 598 (819)
-...+++.....+.+.+++....... + ..+. .
T Consensus 290 -----~~~~l~~~~~~~~~~~~~~~~~~~~~--------------~--~~~~---------------------------~ 321 (510)
T 2oca_A 290 -----EDGQVTELKINSIFLRYPDEFTTKLK--------------G--KTYQ---------------------------E 321 (510)
T ss_dssp -----------CCEEEEEEEECCHHHHHHHT--------------T--CCHH---------------------------H
T ss_pred -----hCCcCCCceEEEEeecCChHHhcccc--------------c--cchH---------------------------H
Confidence 00146677777788888775441110 0 0000 0
Q ss_pred HHHHhhhcCchHHHHHHHHHHHHhc-CceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCc
Q 003450 599 SFKQLLESSGKLQLLDKMMVKLKEQ-GHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSR 677 (819)
Q Consensus 599 ~~~~l~~~s~Kl~~l~~ll~~l~~~-g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~ 677 (819)
....+.....|...+.+++...... +.++|||+. +..++.|.+.|...|.++..++|+++..+|+++++.|+++...
T Consensus 322 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~- 399 (510)
T 2oca_A 322 EIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGI- 399 (510)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSC-
T ss_pred HHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCC-
Confidence 1112223345666677777766554 566777777 8888889999999988999999999999999999999876544
Q ss_pred EEEEecc-ccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCC-cEEEEEEEeCCCHHHHHH
Q 003450 678 FCFLLST-RAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN-KVMIFRLITRGSIEERMM 743 (819)
Q Consensus 678 ~v~L~st-~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~-~V~v~~li~~~TvEe~i~ 743 (819)
+|++| .++++|||++.+++||+++++||+..+.|++||++|.|+.+ .|.||.++...++.+.++
T Consensus 400 --vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~~~ 465 (510)
T 2oca_A 400 --IIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPKSA 465 (510)
T ss_dssp --EEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCSSS
T ss_pred --EEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhhhh
Confidence 78888 99999999999999999999999999999999999999987 799999999877555443
No 14
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.1e-34 Score=343.97 Aligned_cols=423 Identities=16% Similarity=0.227 Sum_probs=239.1
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-----CCceEEEecC-cchHHH-HHHHHHHc
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-----ISPHLVVAPL-STLRNW-EREFATWA 356 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~-----~~~~LIv~P~-~ll~qW-~~e~~~~~ 356 (819)
.+|+|||.+++.++ ..++++||+++||+|||++++.++..++..+ .+++|||+|+ +|+.|| .+++.+++
T Consensus 6 ~~l~~~Q~~~i~~i----l~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 6 LQLRPYQMEVAQPA----LEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp -CCCHHHHHHHHHH----HSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CCccHHHHHHHHHH----HhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 57999999999988 4478999999999999999988887654322 2689999996 688999 99999999
Q ss_pred CC-CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--------cccCCc
Q 003450 357 PQ-MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--------ASLKPI 427 (819)
Q Consensus 357 p~-~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--------~~l~~~ 427 (819)
+. +.+..++|+.......... ....+|+|+||+.+.... ..+...
T Consensus 82 ~~~~~v~~~~g~~~~~~~~~~~--------------------------~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~ 135 (699)
T 4gl2_A 82 KKWYRVIGLSGDTQLKISFPEV--------------------------VKSCDIIISTAQILENSLLNLENGEDAGVQLS 135 (699)
T ss_dssp TTTSCEEEEC----CCCCHHHH--------------------------HHSCSEEEEEHHHHHHHTC--------CCCGG
T ss_pred CcCceEEEEeCCcchhhHHHhh--------------------------hcCCCEEEECHHHHHHHHhccccccccceecc
Confidence 76 8999999886543211111 135789999999997533 234455
Q ss_pred cceEEEecccccccCccc--HHHH-HHHh-c-------------ccCcEEEEeCCCCCCCh-------hHHHhhhcccCC
Q 003450 428 KWQCMIVDEGHRLKNKDS--KLFS-SLKQ-Y-------------STRHRVLLTGTPLQNNL-------DELFMLMHFLDA 483 (819)
Q Consensus 428 ~~~~lIvDEaH~~kn~~s--~~~~-~l~~-l-------------~~~~~llLTgTP~~n~~-------~el~~ll~~l~~ 483 (819)
.|++|||||||++.+... .+.. .+.. + ....+++|||||..++. .++..++..+++
T Consensus 136 ~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~ 215 (699)
T 4gl2_A 136 DFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDA 215 (699)
T ss_dssp GCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTC
T ss_pred cCcEEEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCC
Confidence 899999999999854321 1111 1111 1 44678999999998643 344455555555
Q ss_pred CCCCC----hHHHHHHHhcc------chHHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHH
Q 003450 484 GKFGS----LEEFQEEFKDI------NQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILT 553 (819)
Q Consensus 484 ~~~~~----~~~f~~~~~~~------~~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~ 553 (819)
..+.. ...+...+... ........+...+...+- ...... .+.+.. .+.. ..|.....
T Consensus 216 ~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~-~i~~~~--~~~~~~------~~g~---~~~~~~~~ 283 (699)
T 4gl2_A 216 FTIKTVKENLDQLKNQIQEPCKKFAIADATREDPFKEKLLEIMT-RIQTYC--QMSPMS------DFGT---QPYEQWAI 283 (699)
T ss_dssp SCCCCCCTTHHHHHHHSCCCEEEEEEEC-----CHHHHHHHHHH-HHHHHH--TCCCCS------CSSS---HHHHHHHH
T ss_pred CEEEeecCchHHHhhhcCCCceEEEEcccccCChHHHHHHHHHH-HHHHHh--ccCcch------hccc---hHHHHHHH
Confidence 22221 12222211110 000000111111111110 000000 111100 0000 11111111
Q ss_pred HHHHHHHhcCCCcc-h-------------------HHHHHHHHHHhcCCCc-----ccCC---CCCCccCcHHHHHHh--
Q 003450 554 RNYQILTRRGGAQI-S-------------------LINVVMELRKLCCHPY-----MLEG---VEPDIEDTNESFKQL-- 603 (819)
Q Consensus 554 ~~~~~l~~~~~~~~-~-------------------~~~~~~~lr~~~~hp~-----l~~~---~~~~~~~~~~~~~~l-- 603 (819)
.............. . ....+..++....... .... ..............+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (699)
T 4gl2_A 284 QMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFF 363 (699)
T ss_dssp HHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHH
Confidence 10000000000000 0 0000000000000000 0000 000000000011111
Q ss_pred ---------h----hcCchHHHHHHHHHHHHhc---CceEEEEecchhHHHHHHHHHhhC------CCeEEEEecc----
Q 003450 604 ---------L----ESSGKLQLLDKMMVKLKEQ---GHRVLIYSQFQHMLDLLEDYLTFK------KWQYERIDGK---- 657 (819)
Q Consensus 604 ---------~----~~s~Kl~~l~~ll~~l~~~---g~kvlIFs~~~~~ld~L~~~L~~~------g~~~~~l~G~---- 657 (819)
. ..+.|+..|.++|...... +.++|||++++.+++.|.++|... |+++..++|+
T Consensus 364 ~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~ 443 (699)
T 4gl2_A 364 ENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSS 443 (699)
T ss_dssp HHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCT
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCcc
Confidence 0 1456788888888775543 789999999999999999999987 9999999999
Q ss_pred ----CChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEE
Q 003450 658 ----VGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLI 733 (819)
Q Consensus 658 ----~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li 733 (819)
++..+|++++++|+++... +||+|.++++|||++++++||+||++||+..+.|++||++|.| ..++.+.
T Consensus 444 ~~~~~~~~eR~~~~~~F~~g~~~---VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~ 516 (699)
T 4gl2_A 444 EFKPMTQNEQKEVISKFRTGKIN---LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVA 516 (699)
T ss_dssp TCCCCCHHHHHHHHHHHCC---C---CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHhcCCCc---EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEE
Confidence 9999999999999875433 7999999999999999999999999999999999999986654 4445556
Q ss_pred eCCCHHHHHHHHHHHhhhhHHH
Q 003450 734 TRGSIEERMMQMTKKKMVLEHL 755 (819)
Q Consensus 734 ~~~TvEe~i~~~~~~K~~l~~~ 755 (819)
..++.+.........+..+...
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~ 538 (699)
T 4gl2_A 517 HSGSGVIERETVNDFREKMMYK 538 (699)
T ss_dssp ESSSCSHHHHHHHHHHHHHHHH
T ss_pred eCCchHHHHHHHHHHHHHHHHH
Confidence 6666444433333333333333
No 15
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=6.1e-34 Score=339.87 Aligned_cols=402 Identities=16% Similarity=0.178 Sum_probs=216.0
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC----CCceEEEecC-cchHHHHHHHHHHcC-
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPL-STLRNWEREFATWAP- 357 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~----~~~~LIv~P~-~ll~qW~~e~~~~~p- 357 (819)
.+|+|||.+++.++ ..++++|++++||+|||++++.++....... .+++|||+|+ +++.||.+++.++++
T Consensus 12 ~~lr~~Q~~~i~~~----l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 12 FKPRNYQLELALPA----MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp -CCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCccHHHHHHHHHH----HcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 57999999999988 4578999999999999999888877654322 2589999997 999999999999986
Q ss_pred -CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhccc--cc-CCccceEEE
Q 003450 358 -QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SL-KPIKWQCMI 433 (819)
Q Consensus 358 -~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l-~~~~~~~lI 433 (819)
++.+..++|+...+...... ....+|+|+||+.+..... .+ ....|++||
T Consensus 88 ~~~~v~~~~g~~~~~~~~~~~--------------------------~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vV 141 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVEQI--------------------------VENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 141 (696)
T ss_dssp TTCCEEEECSSSCSSSCHHHH--------------------------HHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEE
T ss_pred CCceEEEEeCCccccccHHHh--------------------------ccCCCEEEECHHHHHHHHhcCcccccccccEEE
Confidence 78898998876432211110 1257899999999976432 23 345789999
Q ss_pred ecccccccCcccHHHHH---HHh-c-----ccCcEEEEeCCCCCCC-------hhHHHhhhcccCCCCCC---ChHHHHH
Q 003450 434 VDEGHRLKNKDSKLFSS---LKQ-Y-----STRHRVLLTGTPLQNN-------LDELFMLMHFLDAGKFG---SLEEFQE 494 (819)
Q Consensus 434 vDEaH~~kn~~s~~~~~---l~~-l-----~~~~~llLTgTP~~n~-------~~el~~ll~~l~~~~~~---~~~~f~~ 494 (819)
|||||++++..+..... +.. + ...++++|||||..++ ...+..++..++...+. .......
T Consensus 142 iDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~ 221 (696)
T 2ykg_A 142 FDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELE 221 (696)
T ss_dssp EETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHH
T ss_pred EeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHH
Confidence 99999998765422222 111 1 3467899999998554 34455555444433221 1111111
Q ss_pred HHhccc--------h------H-------HHHHHHHHH--------------------HhhHHHHHhhhhhhhcCCCceE
Q 003450 495 EFKDIN--------Q------E-------EQISRLHRM--------------------LAPHLLRRVKKDVMKELPPKKE 533 (819)
Q Consensus 495 ~~~~~~--------~------~-------~~~~~l~~~--------------------l~~~~lrr~k~dv~~~lp~~~~ 533 (819)
.|.... . . ..+..+... +..++.+..+......+|.+..
T Consensus 222 ~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (696)
T 2ykg_A 222 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE 301 (696)
T ss_dssp HHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CC
T ss_pred hhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchh
Confidence 111000 0 0 011111100 0011111111111111111110
Q ss_pred EEEEecCCHHHHHHHHHHHHHH------HHH-HHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccCcHHH-------
Q 003450 534 LILRVELSSKQKEYYKAILTRN------YQI-LTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNES------- 599 (819)
Q Consensus 534 ~~v~~~ls~~q~~~y~~i~~~~------~~~-l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~~~~------- 599 (819)
+..++..+.... ... ..............+..+....... ........
T Consensus 302 ----------~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~ 363 (696)
T 2ykg_A 302 ----------ESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAA--------GFDEIEQDLTQRFEE 363 (696)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTT--------CCCHHHHHHHHHHHT
T ss_pred ----------hhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhc--------ccchHHHHHHHHHHH
Confidence 111111110000 000 0000000000011111100000000 00000000
Q ss_pred ----HHHh----hhcCchHHHHHHHHHHHH--hcCceEEEEecchhHHHHHHHHHhhCC----CeEEEEec--------c
Q 003450 600 ----FKQL----LESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFKK----WQYERIDG--------K 657 (819)
Q Consensus 600 ----~~~l----~~~s~Kl~~l~~ll~~l~--~~g~kvlIFs~~~~~ld~L~~~L~~~g----~~~~~l~G--------~ 657 (819)
+..+ ...+.|+..|.+++.... ..+.++|||++++..++.|.++|...| +++..++| +
T Consensus 364 ~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~ 443 (696)
T 2ykg_A 364 KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 443 (696)
T ss_dssp THHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC------------
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccC
Confidence 0000 025789999999998864 257899999999999999999999888 89998855 9
Q ss_pred CChHHHHHHHHHhcC-CCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCC
Q 003450 658 VGGAERQIRIDRFNA-KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (819)
Q Consensus 658 ~~~~~R~~~i~~F~~-~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~ 736 (819)
++.++|++++++|++ +... +||+|+++++|||++++++||+||++||+..+.||+|| +|. ++..+|.|++.+
T Consensus 444 ~~~~eR~~v~~~F~~~g~~~---vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~ 516 (696)
T 2ykg_A 444 MTLPAQKCILDAFKASGDHN---ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNA 516 (696)
T ss_dssp -----------------CCS---CSEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCH
T ss_pred CCHHHHHHHHHHHHhcCCcc---EEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCC
Confidence 999999999999986 4433 69999999999999999999999999999999999999 885 567788999988
Q ss_pred CHHH
Q 003450 737 SIEE 740 (819)
Q Consensus 737 TvEe 740 (819)
++++
T Consensus 517 ~~~~ 520 (696)
T 2ykg_A 517 GVIE 520 (696)
T ss_dssp HHHH
T ss_pred CHHH
Confidence 8754
No 16
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=6.9e-33 Score=323.61 Aligned_cols=351 Identities=16% Similarity=0.172 Sum_probs=217.3
Q ss_pred CCCCchhHHHHHHHHHHhhcCC-CceEEEcCCCCcHHHHHHHHHHHHhcCC--------CCceEEEec-CcchHHHH-HH
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQ-THVILADEMGLGKTIQSIAFLASLFGER--------ISPHLVVAP-LSTLRNWE-RE 351 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~-~~~iLade~GlGKT~~~i~~l~~l~~~~--------~~~~LIv~P-~~ll~qW~-~e 351 (819)
+..|+|||.++++++...+..+ ++++|+++||+|||++++.++..+...+ .+++||||| .+|+.||. ++
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 4689999999999997776665 5689999999999999999888876543 459999999 68889999 78
Q ss_pred HHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc------cccC
Q 003450 352 FATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS------ASLK 425 (819)
Q Consensus 352 ~~~~~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~------~~l~ 425 (819)
+..|.+. +..+.+. ......+|+|+||+.+.... ..+.
T Consensus 256 ~~~~~~~--~~~~~~~----------------------------------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~ 299 (590)
T 3h1t_A 256 FTPFGDA--RHKIEGG----------------------------------KVVKSREIYFAIYQSIASDERRPGLYKEFP 299 (590)
T ss_dssp CTTTCSS--EEECCC------------------------------------CCSSCSEEEEEGGGC------CCGGGGSC
T ss_pred HHhcchh--hhhhhcc----------------------------------CCCCCCcEEEEEhhhhccccccccccccCC
Confidence 8877642 2222111 01235789999999987642 2344
Q ss_pred CccceEEEecccccccCcc-cHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHH
Q 003450 426 PIKWQCMIVDEGHRLKNKD-SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ 504 (819)
Q Consensus 426 ~~~~~~lIvDEaH~~kn~~-s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~ 504 (819)
...|++|||||||++.+.. +.....+..+...++++|||||..+...+++.++. +..+. . .
T Consensus 300 ~~~~~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~---~~~~~-~----------~---- 361 (590)
T 3h1t_A 300 QDFFDLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTATPLREDNRDTYRYFG---NPIYT-Y----------S---- 361 (590)
T ss_dssp TTSCSEEEESCCC---------CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSC---SCSEE-E----------C----
T ss_pred CCccCEEEEECCccccccchHHHHHHHHhCCcceEEEeccccccccchhHHHHcC---CceEe-c----------C----
Confidence 4568999999999997653 34445556667788999999999888766665543 11100 0 0
Q ss_pred HHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCc
Q 003450 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY 584 (819)
Q Consensus 505 ~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~ 584 (819)
+...+. ...+++.....+......................+....-
T Consensus 362 ---~~~~i~-----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 407 (590)
T 3h1t_A 362 ---LRQGID-----------DGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEY-------------------- 407 (590)
T ss_dssp ---HHHHHH-----------HTSSCCEEEEEEEETTCC------------------------------------------
T ss_pred ---HHHHhh-----------CCccCCcEEEEeeeeeeccccccccccccccccccccccC--------------------
Confidence 000000 0134555555555544322211111111000000000000
Q ss_pred ccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHH---hcCceEEEEecchhHHHHHHHHHhhCCCe--------EEE
Q 003450 585 MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK---EQGHRVLIYSQFQHMLDLLEDYLTFKKWQ--------YER 653 (819)
Q Consensus 585 l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~---~~g~kvlIFs~~~~~ld~L~~~L~~~g~~--------~~~ 653 (819)
.. ..+...+....+...+.+.+..+. ..+.|+||||+....++.|.+.|...+.. +..
T Consensus 408 -------~~----~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 476 (590)
T 3h1t_A 408 -------QT----KDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVAR 476 (590)
T ss_dssp --------C----CSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEE
T ss_pred -------CH----HHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEE
Confidence 00 001111122233444444333322 34689999999999999999999765443 778
Q ss_pred EeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCC---CCcEEEE
Q 003450 654 IDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQ---TNKVMIF 730 (819)
Q Consensus 654 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq---~~~V~v~ 730 (819)
++|.++ ++|++++++|++++....++|++|+++++|||++.+++||+++++||+..+.|++||++|.|+ +..+.||
T Consensus 477 i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~ 555 (590)
T 3h1t_A 477 VTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNII 555 (590)
T ss_dssp CSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEE
T ss_pred EeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEE
Confidence 999875 479999999998776666689999999999999999999999999999999999999999996 4567888
Q ss_pred EEE
Q 003450 731 RLI 733 (819)
Q Consensus 731 ~li 733 (819)
.++
T Consensus 556 D~~ 558 (590)
T 3h1t_A 556 DYT 558 (590)
T ss_dssp ECS
T ss_pred ecC
Confidence 877
No 17
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=8.3e-32 Score=298.60 Aligned_cols=327 Identities=15% Similarity=0.189 Sum_probs=226.8
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--CCCceEEEecC-cchHHHHHHHHHHc---CC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWA---PQ 358 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~--~~~~~LIv~P~-~ll~qW~~e~~~~~---p~ 358 (819)
.|+|||.+++.++ ..++++++.++||+|||++++..+...... ...++|||||. .++.||.+++.++. |+
T Consensus 30 ~~~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 105 (391)
T 1xti_A 30 HPSEVQHECIPQA----ILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 105 (391)
T ss_dssp SCCHHHHHHHHHH----TTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTT
T ss_pred CCCHHHHHHHHHH----hcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence 5999999999877 557899999999999999987777665443 23489999997 88899999999986 57
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccceEEEecc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDE 436 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~lIvDE 436 (819)
+++..++|+.......... ....++|+|+|++.+.... ..+....+++||+||
T Consensus 106 ~~~~~~~g~~~~~~~~~~~-------------------------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDE 160 (391)
T 1xti_A 106 VKVAVFFGGLSIKKDEEVL-------------------------KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 160 (391)
T ss_dssp CCEEEECTTSCHHHHHHHH-------------------------HHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECS
T ss_pred eEEEEEeCCCCHHHHHHHH-------------------------hcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeC
Confidence 8899998876554332221 1134689999999987532 223345789999999
Q ss_pred cccccCccc--HHH-HHHHhcc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHH
Q 003450 437 GHRLKNKDS--KLF-SSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 512 (819)
Q Consensus 437 aH~~kn~~s--~~~-~~l~~l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l 512 (819)
||++.+... ... ..+.... ...++++||||-... .++. ..+..
T Consensus 161 aH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~-~~~~------------------~~~~~-------------- 207 (391)
T 1xti_A 161 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEI-RPVC------------------RKFMQ-------------- 207 (391)
T ss_dssp HHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTH-HHHH------------------HHHCS--------------
T ss_pred HHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHH-HHHH------------------HHHcC--------------
Confidence 999966322 122 2222332 456899999984221 1000 00000
Q ss_pred hhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCC
Q 003450 513 APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (819)
Q Consensus 513 ~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~ 592 (819)
.+..+ .................+.
T Consensus 208 ~~~~~-~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 231 (391)
T 1xti_A 208 DPMEI-FVDDETKLTLHGLQQYYVK------------------------------------------------------- 231 (391)
T ss_dssp SCEEE-ECCCCCCCCCTTCEEEEEE-------------------------------------------------------
T ss_pred CCeEE-EecCccccCcccceEEEEE-------------------------------------------------------
Confidence 00000 0000000000000000000
Q ss_pred ccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcC
Q 003450 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (819)
Q Consensus 593 ~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~ 672 (819)
.....|...+.+++... .++++|||++....++.+.+.|...|+++..++|+++..+|.++++.|++
T Consensus 232 -----------~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 298 (391)
T 1xti_A 232 -----------LKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 298 (391)
T ss_dssp -----------CCGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred -----------cCchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc
Confidence 11234666666666653 57899999999999999999999999999999999999999999999987
Q ss_pred CCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 003450 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (819)
Q Consensus 673 ~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~~ 748 (819)
+... +|++|+++++|+|++++++||++|++||+..+.|++||++|.|+...+. .|++.. -++.++....+
T Consensus 299 ~~~~---vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~--~~~~~~-~~~~~~~~~~~ 368 (391)
T 1xti_A 299 FQRR---ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI--TFVSDE-NDAKILNDVQD 368 (391)
T ss_dssp TCCS---EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEE--EEECSH-HHHHHHHHHHH
T ss_pred CCCc---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEE--EEEccc-chHHHHHHHHH
Confidence 6543 7999999999999999999999999999999999999999999766554 344433 24444444443
No 18
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.98 E-value=3.4e-31 Score=290.83 Aligned_cols=310 Identities=15% Similarity=0.231 Sum_probs=221.3
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-CCCceEEEecC-cchHHHHHHHHHHcC--CCe
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPL-STLRNWEREFATWAP--QMN 360 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~-~~~~~LIv~P~-~ll~qW~~e~~~~~p--~~~ 360 (819)
+|+|+|.+++.++. ..++++++.++||+|||++++..+..+... ...++|||+|. .++.||.+++.++++ ++.
T Consensus 28 ~~~~~Q~~~i~~~~---~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 104 (367)
T 1hv8_A 28 KPTDIQMKVIPLFL---NDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLK 104 (367)
T ss_dssp SCCHHHHHHHHHHH---HTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCHHHHHHHHHHh---CCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCce
Confidence 69999999998773 234789999999999999988877776554 34489999997 778999999999875 467
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhccc--ccCCccceEEEecccc
Q 003450 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDEGH 438 (819)
Q Consensus 361 v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~lIvDEaH 438 (819)
+..++|........... ...+|+|+|++.+..... .+...++++||+||||
T Consensus 105 v~~~~~~~~~~~~~~~~---------------------------~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 105 IAKIYGGKAIYPQIKAL---------------------------KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 157 (367)
T ss_dssp EEEECTTSCHHHHHHHH---------------------------HTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EEEEECCcchHHHHhhc---------------------------CCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch
Confidence 77777776554332221 256899999999875422 2334578999999999
Q ss_pred cccCcc--cHHHHHHHhc-ccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhH
Q 003450 439 RLKNKD--SKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPH 515 (819)
Q Consensus 439 ~~kn~~--s~~~~~l~~l-~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~ 515 (819)
++.+.+ ......+..+ ...+.+++||||.... ..+ +...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~----~~~------------------------------~~~~---- 199 (367)
T 1hv8_A 158 EMLNMGFIKDVEKILNACNKDKRILLFSATMPREI----LNL------------------------------AKKY---- 199 (367)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHH----HHH------------------------------HHHH----
T ss_pred HhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHH----HHH------------------------------HHHH----
Confidence 987644 2233344444 3456799999983110 000 0000
Q ss_pred HHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccC
Q 003450 516 LLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (819)
Q Consensus 516 ~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~ 595 (819)
+.. ...+...... . ..+.+.
T Consensus 200 ------------~~~--~~~~~~~~~~----------------------~--------------~~~~~~---------- 219 (367)
T 1hv8_A 200 ------------MGD--YSFIKAKINA----------------------N--------------IEQSYV---------- 219 (367)
T ss_dssp ------------CCS--EEEEECCSSS----------------------S--------------SEEEEE----------
T ss_pred ------------cCC--CeEEEecCCC----------------------C--------------ceEEEE----------
Confidence 000 0000000000 0 000000
Q ss_pred cHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCC
Q 003450 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNS 675 (819)
Q Consensus 596 ~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~ 675 (819)
......|+..+.+++. ..+.++|||++....++.+.+.|...|+.+..++|+++..+|+++++.|+++..
T Consensus 220 -------~~~~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 289 (367)
T 1hv8_A 220 -------EVNENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKI 289 (367)
T ss_dssp -------ECCGGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSS
T ss_pred -------EeChHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCC
Confidence 0012335555555554 567899999999999999999999999999999999999999999999987543
Q ss_pred CcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCC
Q 003450 676 SRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (819)
Q Consensus 676 ~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~T 737 (819)
. +|++|.++++|+|++++++||+++++||+..+.|++||++|.|+...+ +.+++...
T Consensus 290 ~---vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~ 346 (367)
T 1hv8_A 290 R---ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKA--ISIINRRE 346 (367)
T ss_dssp S---EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEE--EEEECTTS
T ss_pred e---EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEE--EEEEcHHH
Confidence 3 799999999999999999999999999999999999999999987755 44555553
No 19
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=7.2e-31 Score=291.99 Aligned_cols=313 Identities=17% Similarity=0.215 Sum_probs=221.7
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--CCCceEEEecC-cchHHHHHHHHHHcC--CC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWAP--QM 359 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~--~~~~~LIv~P~-~ll~qW~~e~~~~~p--~~ 359 (819)
+|+|||.+++.++. .++++++.++||+|||++++..+...... ...++|||+|. .++.||.+++.++.+ ++
T Consensus 43 ~~~~~Q~~~i~~i~----~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (400)
T 1s2m_A 43 KPSPIQEEAIPVAI----TGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 118 (400)
T ss_dssp SCCHHHHHHHHHHH----HTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHh----cCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 59999999999873 56789999999999999887777665443 23489999997 788999999999885 56
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccceEEEeccc
Q 003450 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEG 437 (819)
Q Consensus 360 ~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~lIvDEa 437 (819)
.+..++|........... ...++|+|+|++.+.... ......++++||+|||
T Consensus 119 ~~~~~~g~~~~~~~~~~~--------------------------~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEa 172 (400)
T 1s2m_A 119 SCMVTTGGTNLRDDILRL--------------------------NETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEA 172 (400)
T ss_dssp CEEEECSSSCHHHHHHHT--------------------------TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESH
T ss_pred eEEEEeCCcchHHHHHHh--------------------------cCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCc
Confidence 788888876655433221 135789999999886432 2233446899999999
Q ss_pred ccccCcc-cHHHHHHH-hcc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhh
Q 003450 438 HRLKNKD-SKLFSSLK-QYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (819)
Q Consensus 438 H~~kn~~-s~~~~~l~-~l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~ 514 (819)
|++.+.. ......+. .+. ....++||||+-.. + ...+..
T Consensus 173 H~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~----~----------------------------------~~~~~~ 214 (400)
T 1s2m_A 173 DKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLT----V----------------------------------KEFMVK 214 (400)
T ss_dssp HHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHH----H----------------------------------HHHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHH----H----------------------------------HHHHHH
Confidence 9986543 12222222 232 45679999996210 0 000000
Q ss_pred HHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCcc
Q 003450 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (819)
Q Consensus 515 ~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~ 594 (819)
+ +..... +..... .... . ..+-+
T Consensus 215 ~------------~~~~~~----~~~~~~------------------~~~~------------~-~~~~~---------- 237 (400)
T 1s2m_A 215 H------------LHKPYE----INLMEE------------------LTLK------------G-ITQYY---------- 237 (400)
T ss_dssp H------------CSSCEE----ESCCSS------------------CBCT------------T-EEEEE----------
T ss_pred H------------cCCCeE----EEeccc------------------cccC------------C-ceeEE----------
Confidence 0 000000 000000 0000 0 00000
Q ss_pred CcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCC
Q 003450 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (819)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~ 674 (819)
.......|+..+..++... .+.++|||++....++.+.+.|...|+.+..++|+++..+|+.+++.|+++.
T Consensus 238 -------~~~~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 308 (400)
T 1s2m_A 238 -------AFVEERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK 308 (400)
T ss_dssp -------EECCGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred -------EEechhhHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCC
Confidence 0011345777777777653 5679999999999999999999999999999999999999999999998765
Q ss_pred CCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCC
Q 003450 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (819)
Q Consensus 675 ~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~ 736 (819)
.. +|++|+++++|+|++++++||++|++||+..+.|++||++|.|+.. .++.|++.+
T Consensus 309 ~~---vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~l~~~~ 365 (400)
T 1s2m_A 309 VR---TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG--LAINLINWN 365 (400)
T ss_dssp SS---EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE--EEEEEECGG
T ss_pred Cc---EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCc--eEEEEeccc
Confidence 43 7999999999999999999999999999999999999999999764 445566665
No 20
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=8.2e-31 Score=292.54 Aligned_cols=316 Identities=17% Similarity=0.232 Sum_probs=224.0
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--CCCceEEEecC-cchHHHHHHHHHHcC--CC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWAP--QM 359 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~--~~~~~LIv~P~-~ll~qW~~e~~~~~p--~~ 359 (819)
+|+|||.+++.++ ..++++++.++||+|||++++..+...... ...++|||+|. .++.||.+++.++.. ++
T Consensus 59 ~~~~~Q~~ai~~i----~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 134 (410)
T 2j0s_A 59 KPSAIQQRAIKQI----IKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV 134 (410)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCe
Confidence 5999999999987 457889999999999999988777665442 34599999997 788999999999874 46
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--ccccCCccceEEEeccc
Q 003450 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEG 437 (819)
Q Consensus 360 ~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~lIvDEa 437 (819)
.+..+.|........... ....+|+|+|++.+... ...+....+++||+|||
T Consensus 135 ~~~~~~g~~~~~~~~~~~--------------------------~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEa 188 (410)
T 2j0s_A 135 QCHACIGGTNVGEDIRKL--------------------------DYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEA 188 (410)
T ss_dssp CEEEECTTSCHHHHHHHH--------------------------HHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEEEEECCCCHHHHHHHh--------------------------hcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccH
Confidence 777777776555443332 12468999999988643 22344457899999999
Q ss_pred ccccCcc--cHHHHHHHhcc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhh
Q 003450 438 HRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (819)
Q Consensus 438 H~~kn~~--s~~~~~l~~l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~ 514 (819)
|++.+.+ ..+...+..+. ....+++||||-. ++..++......... +.
T Consensus 189 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~~~~~-----------~~-------------- 239 (410)
T 2j0s_A 189 DEMLNKGFKEQIYDVYRYLPPATQVVLISATLPH----EILEMTNKFMTDPIR-----------IL-------------- 239 (410)
T ss_dssp HHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCH----HHHTTGGGTCSSCEE-----------EC--------------
T ss_pred HHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCH----HHHHHHHHHcCCCEE-----------EE--------------
Confidence 9986644 23333333443 4578999999831 222211111000000 00
Q ss_pred HHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCcc
Q 003450 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (819)
Q Consensus 515 ~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~ 594 (819)
........+......+.+.-
T Consensus 240 ------~~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 259 (410)
T 2j0s_A 240 ------VKRDELTLEGIKQFFVAVER------------------------------------------------------ 259 (410)
T ss_dssp ------CCGGGCSCTTEEEEEEEESS------------------------------------------------------
T ss_pred ------ecCccccCCCceEEEEEeCc------------------------------------------------------
Confidence 00000001111111111110
Q ss_pred CcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCC
Q 003450 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (819)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~ 674 (819)
...|+..|.+++... .+.++||||+....++.+.+.|...|+.+..++|+++..+|+++++.|+++.
T Consensus 260 -----------~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 326 (410)
T 2j0s_A 260 -----------EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA 326 (410)
T ss_dssp -----------TTHHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTS
T ss_pred -----------HHhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCC
Confidence 122555666666554 3569999999999999999999999999999999999999999999998765
Q ss_pred CCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCC
Q 003450 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (819)
Q Consensus 675 ~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~T 737 (819)
.. +|++|+++++|||++++++||+||++|++..+.|++||++|.|+.. .++.|++...
T Consensus 327 ~~---vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~ 384 (410)
T 2j0s_A 327 SR---VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG--VAINFVKNDD 384 (410)
T ss_dssp SC---EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCE--EEEEEEEGGG
T ss_pred CC---EEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCce--EEEEEecHHH
Confidence 43 7999999999999999999999999999999999999999999765 4455666553
No 21
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=2.1e-30 Score=280.99 Aligned_cols=311 Identities=15% Similarity=0.211 Sum_probs=213.4
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcC--CCeE
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--QMNV 361 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p--~~~v 361 (819)
+|+|||.+++.++ ..++++++.++||+|||++++..+... ..++|||+|. .++.||.+++.++.+ +..+
T Consensus 16 ~l~~~Q~~~i~~i----~~~~~~lv~~~TGsGKT~~~~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~ 87 (337)
T 2z0m_A 16 NFTEVQSKTIPLM----LQGKNVVVRAKTGSGKTAAYAIPILEL----GMKSLVVTPTRELTRQVASHIRDIGRYMDTKV 87 (337)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHH----TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCE
T ss_pred CCCHHHHHHHHHH----hcCCCEEEEcCCCCcHHHHHHHHHHhh----cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcE
Confidence 5999999999987 467899999999999999887766553 3589999997 788999999999874 5677
Q ss_pred EEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--ccccCCccceEEEeccccc
Q 003450 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHR 439 (819)
Q Consensus 362 ~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~lIvDEaH~ 439 (819)
..++|........... ..++|+|+|++.+... ...+...+|++||+||||+
T Consensus 88 ~~~~~~~~~~~~~~~~---------------------------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~ 140 (337)
T 2z0m_A 88 AEVYGGMPYKAQINRV---------------------------RNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADL 140 (337)
T ss_dssp EEECTTSCHHHHHHHH---------------------------TTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHH
T ss_pred EEEECCcchHHHHhhc---------------------------CCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHH
Confidence 8888876554433221 2478999999998753 2233345789999999999
Q ss_pred ccCcc--cHHHHHHHhcccC-cEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHH
Q 003450 440 LKNKD--SKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (819)
Q Consensus 440 ~kn~~--s~~~~~l~~l~~~-~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~ 516 (819)
+.+.+ ......+..+... ..+++||||-.. +... +...+..+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~----~~~~------------------------------~~~~~~~~~ 186 (337)
T 2z0m_A 141 MFEMGFIDDIKIILAQTSNRKITGLFSATIPEE----IRKV------------------------------VKDFITNYE 186 (337)
T ss_dssp HHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHH----HHHH------------------------------HHHHSCSCE
T ss_pred hhccccHHHHHHHHhhCCcccEEEEEeCcCCHH----HHHH------------------------------HHHhcCCce
Confidence 86543 2333444445444 456789998211 0000 000000000
Q ss_pred HHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccCc
Q 003450 517 LRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDT 596 (819)
Q Consensus 517 lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~ 596 (819)
.-......+......+.+.-.
T Consensus 187 ----~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 207 (337)
T 2z0m_A 187 ----EIEACIGLANVEHKFVHVKDD------------------------------------------------------- 207 (337)
T ss_dssp ----EEECSGGGGGEEEEEEECSSS-------------------------------------------------------
T ss_pred ----eeecccccCCceEEEEEeChH-------------------------------------------------------
Confidence 000000000011111111100
Q ss_pred HHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCC
Q 003450 597 NESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSS 676 (819)
Q Consensus 597 ~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~ 676 (819)
.......+. ...+.++|||++....++.+.+.|. .+..++|+++..+|.++++.|+++...
T Consensus 208 -------------~~~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~ 268 (337)
T 2z0m_A 208 -------------WRSKVQALR--ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYD 268 (337)
T ss_dssp -------------SHHHHHHHH--TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred -------------HHHHHHHHH--hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCc
Confidence 000001111 1357899999999999999998887 578899999999999999999876543
Q ss_pred cEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHH
Q 003450 677 RFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (819)
Q Consensus 677 ~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~ 746 (819)
+|++|+++++|+|++++++||+++++||+..+.|++||++|.|+...+.+|.. .+..+.+.+.+..
T Consensus 269 ---vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 269 ---MLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp ---EEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred ---EEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999887777665 4445555554443
No 22
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.97 E-value=7e-30 Score=286.23 Aligned_cols=312 Identities=14% Similarity=0.196 Sum_probs=217.8
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHH-HHhcCC------CCceEEEecC-cchHHHHHHHHHHc
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGER------ISPHLVVAPL-STLRNWEREFATWA 356 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~-~l~~~~------~~~~LIv~P~-~ll~qW~~e~~~~~ 356 (819)
+++|+|.+++..+ ..++++|+.++||+|||++++..+. .+.... ...+|||+|+ .|+.||.+++.++.
T Consensus 78 ~pt~iQ~~ai~~i----~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 78 IPTPIQKCSIPVI----SSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHH----hcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 5899999999877 5789999999999999998765444 443321 2389999997 78899999999987
Q ss_pred C--CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccceEE
Q 003450 357 P--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCM 432 (819)
Q Consensus 357 p--~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~l 432 (819)
. ++++..++|+.......... ...++|+|+|++.+.... ..+...++++|
T Consensus 154 ~~~~~~~~~~~gg~~~~~~~~~l--------------------------~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~l 207 (434)
T 2db3_A 154 FESYLKIGIVYGGTSFRHQNECI--------------------------TRGCHVVIATPGRLLDFVDRTFITFEDTRFV 207 (434)
T ss_dssp TTSSCCCCEECTTSCHHHHHHHH--------------------------TTCCSEEEECHHHHHHHHHTTSCCCTTCCEE
T ss_pred ccCCcEEEEEECCCCHHHHHHHh--------------------------hcCCCEEEEChHHHHHHHHhCCcccccCCeE
Confidence 4 46777778776554433221 135789999999986532 22334567899
Q ss_pred EecccccccCcc--cHHHHHHHhc---ccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHH
Q 003450 433 IVDEGHRLKNKD--SKLFSSLKQY---STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (819)
Q Consensus 433 IvDEaH~~kn~~--s~~~~~l~~l---~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~ 507 (819)
|+||||++...+ ......+..+ .....+++|||+- .++..+..
T Consensus 208 VlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~----~~~~~~~~---------------------------- 255 (434)
T 2db3_A 208 VLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFP----EEIQRMAG---------------------------- 255 (434)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCC----HHHHHHHH----------------------------
T ss_pred EEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCC----HHHHHHHH----------------------------
Confidence 999999986543 3333444433 3456799999972 11111100
Q ss_pred HHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccC
Q 003450 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (819)
Q Consensus 508 l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~ 587 (819)
. .+... ..+.+.... ..... + .+.+.
T Consensus 256 ------~------------~l~~~--~~i~~~~~~---------------------~~~~~----------i-~~~~~-- 281 (434)
T 2db3_A 256 ------E------------FLKNY--VFVAIGIVG---------------------GACSD----------V-KQTIY-- 281 (434)
T ss_dssp ------T------------TCSSC--EEEEESSTT---------------------CCCTT----------E-EEEEE--
T ss_pred ------H------------hccCC--EEEEecccc---------------------ccccc----------c-ceEEE--
Confidence 0 01111 011111000 00000 0 00000
Q ss_pred CCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHH
Q 003450 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (819)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i 667 (819)
.+....|...|.+++.. .+.++|||++....++.|.+.|...|+++..++|++++.+|++++
T Consensus 282 ---------------~~~~~~k~~~l~~~l~~---~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l 343 (434)
T 2db3_A 282 ---------------EVNKYAKRSKLIEILSE---QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQAL 343 (434)
T ss_dssp ---------------ECCGGGHHHHHHHHHHH---CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHH
T ss_pred ---------------EeCcHHHHHHHHHHHHh---CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHH
Confidence 01123455555555544 345699999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeC
Q 003450 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (819)
Q Consensus 668 ~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~ 735 (819)
+.|+++... +|++|+++++|||++++++||+||+|+++..|.||+||++|.|+...+ +.|++.
T Consensus 344 ~~F~~g~~~---vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a--~~~~~~ 406 (434)
T 2db3_A 344 RDFKNGSMK---VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRA--TSFFDP 406 (434)
T ss_dssp HHHHTSSCS---EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEE--EEEECT
T ss_pred HHHHcCCCc---EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEE--EEEEec
Confidence 999876544 799999999999999999999999999999999999999999986554 444553
No 23
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=2.1e-30 Score=289.68 Aligned_cols=316 Identities=16% Similarity=0.195 Sum_probs=210.9
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--CCCceEEEecC-cchHHHHHHHHHHc--CCC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWA--PQM 359 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~--~~~~~LIv~P~-~ll~qW~~e~~~~~--p~~ 359 (819)
.|+|||.+++..+ ..++++|+.++||+|||++++..+...... ...++|||+|. .++.||.+++.+++ .+.
T Consensus 62 ~~~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 137 (414)
T 3eiq_A 62 KPSAIQQRAILPC----IKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGA 137 (414)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCC
T ss_pred CCCHHHHHHhHHH----hCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCc
Confidence 5999999999877 457889999999999999977776665443 33489999997 78899999999986 356
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccceEEEeccc
Q 003450 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEG 437 (819)
Q Consensus 360 ~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~lIvDEa 437 (819)
.+....|........... ....++|+|+|++.+.... ..+....+++||+|||
T Consensus 138 ~~~~~~~~~~~~~~~~~~-------------------------~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEa 192 (414)
T 3eiq_A 138 SCHACIGGTNVRAEVQKL-------------------------QMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEA 192 (414)
T ss_dssp CEEECCCCTTHHHHHHHH-------------------------TTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSH
T ss_pred eEEEEECCcchHHHHHHH-------------------------hcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECH
Confidence 777777766555443332 1145789999999886432 2244456889999999
Q ss_pred ccccCcc--cHHHHHHHhcc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhh
Q 003450 438 HRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (819)
Q Consensus 438 H~~kn~~--s~~~~~l~~l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~ 514 (819)
|++.+.+ ..+...+..+. ....++|||||-. ++..++..
T Consensus 193 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~---------------------------------- 234 (414)
T 3eiq_A 193 DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPS----DVLEVTKK---------------------------------- 234 (414)
T ss_dssp HHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCH----HHHHHHTT----------------------------------
T ss_pred HHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCH----HHHHHHHH----------------------------------
Confidence 9985433 34445555553 4567999999821 11110000
Q ss_pred HHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCcc
Q 003450 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (819)
Q Consensus 515 ~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~ 594 (819)
.+.... .+.+.... ... ....+.+...
T Consensus 235 ------------~~~~~~--~~~~~~~~---------------------~~~-----------~~~~~~~~~~------- 261 (414)
T 3eiq_A 235 ------------FMRDPI--RILVKKEE---------------------LTL-----------EGIRQFYINV------- 261 (414)
T ss_dssp ------------TCSSCE--EECCCCCC---------------------CCT-----------TSCCEEEEEC-------
T ss_pred ------------HcCCCE--EEEecCCc---------------------cCC-----------CCceEEEEEe-------
Confidence 000000 00000000 000 0000000000
Q ss_pred CcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCC
Q 003450 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (819)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~ 674 (819)
-....|+..+.+++... .+.++|||++....++.+.+.|...|+.+..++|+++..+|+++++.|+++.
T Consensus 262 ---------~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 330 (414)
T 3eiq_A 262 ---------EREEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS 330 (414)
T ss_dssp ---------SSSTTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC-
T ss_pred ---------ChHHhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCC
Confidence 01234677777777653 4679999999999999999999999999999999999999999999997754
Q ss_pred CCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCC
Q 003450 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (819)
Q Consensus 675 ~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~ 736 (819)
. .+|++|+++++|||++++++||++|+++|+..+.|++||++|.|+... +|.|++.+
T Consensus 331 ~---~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 387 (414)
T 3eiq_A 331 S---RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV--AINMVTEE 387 (414)
T ss_dssp -----CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------C--EEEEECST
T ss_pred C---cEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCce--EEEEEcHH
Confidence 3 379999999999999999999999999999999999999999997654 45566665
No 24
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.97 E-value=1.1e-29 Score=281.73 Aligned_cols=308 Identities=16% Similarity=0.183 Sum_probs=209.0
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--CCCceEEEecC-cchHHHHHHHHHHcC--C
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWAP--Q 358 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~--~~~~~LIv~P~-~ll~qW~~e~~~~~p--~ 358 (819)
.+|+|+|.+++..+... .++++|+.++||+|||++++..+...... ...++|||+|. .++.||.+++.++.. +
T Consensus 26 ~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 103 (395)
T 3pey_A 26 QKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTK 103 (395)
T ss_dssp CSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccC
Confidence 36999999999887322 34899999999999999987776665433 23489999997 688999999999873 4
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--ccccCCccceEEEecc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDE 436 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~lIvDE 436 (819)
+.+....|..... ......+|+|+|++.+... ...+...++++||+||
T Consensus 104 ~~~~~~~~~~~~~------------------------------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 104 ITSQLIVPDSFEK------------------------------NKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp CCEEEESTTSSCT------------------------------TSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred eeEEEEecCchhh------------------------------hccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 5555555443221 1123678999999998643 2233345789999999
Q ss_pred cccccCccc--HHHHHHHh-cc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHH
Q 003450 437 GHRLKNKDS--KLFSSLKQ-YS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 512 (819)
Q Consensus 437 aH~~kn~~s--~~~~~l~~-l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l 512 (819)
||++.+... .....+.. +. ....+++||||-. .+..+...+.+...
T Consensus 154 ah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~~~~-------------------------- 203 (395)
T 3pey_A 154 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFAD----AVRQYAKKIVPNAN-------------------------- 203 (395)
T ss_dssp HHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCH----HHHHHHHHHSCSCE--------------------------
T ss_pred hhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCH----HHHHHHHHhCCCCe--------------------------
Confidence 999865222 22222333 32 3567999999821 00000000000000
Q ss_pred hhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCC
Q 003450 513 APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (819)
Q Consensus 513 ~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~ 592 (819)
. ........+............
T Consensus 204 ---~----~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------- 225 (395)
T 3pey_A 204 ---T----LELQTNEVNVDAIKQLYMDCK--------------------------------------------------- 225 (395)
T ss_dssp ---E----ECCCGGGCSCTTEEEEEEECS---------------------------------------------------
T ss_pred ---E----EEccccccccccccEEEEEcC---------------------------------------------------
Confidence 0 000000000000111111110
Q ss_pred ccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcC
Q 003450 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (819)
Q Consensus 593 ~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~ 672 (819)
....|...+..++... .+.++|||++....++.+.+.|...|+.+..++|+++..+|+++++.|++
T Consensus 226 ------------~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 291 (395)
T 3pey_A 226 ------------NEADKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFRE 291 (395)
T ss_dssp ------------SHHHHHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT
T ss_pred ------------chHHHHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHC
Confidence 0122333444444332 36799999999999999999999999999999999999999999999987
Q ss_pred CCCCcEEEEeccccccccCCcccCCEEEEeCCCC------CcchHHHHhHhhhhcCCCCcEE
Q 003450 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------NPHADLQAMARAHRLGQTNKVM 728 (819)
Q Consensus 673 ~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~w------np~~~~Qa~gR~~R~Gq~~~V~ 728 (819)
+... +|++|.++++|||++++++||+||++| |+..+.|++||++|.|+...+.
T Consensus 292 g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~ 350 (395)
T 3pey_A 292 GRSK---VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAI 350 (395)
T ss_dssp TSCC---EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEE
T ss_pred CCCC---EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEE
Confidence 6543 799999999999999999999999999 9999999999999999765443
No 25
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.97 E-value=7e-30 Score=285.66 Aligned_cols=316 Identities=16% Similarity=0.258 Sum_probs=215.7
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH-HHHhcCC-------------------CCceEEEecC-
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGER-------------------ISPHLVVAPL- 342 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l-~~l~~~~-------------------~~~~LIv~P~- 342 (819)
.+|+|+|.+++..+ ..++++|+.++||+|||++++..+ ..+.... ...+||++|.
T Consensus 36 ~~~~~~Q~~~i~~i----~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 111 (417)
T 2i4i_A 36 TRPTPVQKHAIPII----KEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTR 111 (417)
T ss_dssp CSCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSH
T ss_pred CCCCHHHHHHHHHH----ccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcH
Confidence 36999999999876 567899999999999998765544 3333211 1368999997
Q ss_pred cchHHHHHHHHHHc--CCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc
Q 003450 343 STLRNWEREFATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD 420 (819)
Q Consensus 343 ~ll~qW~~e~~~~~--p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~ 420 (819)
.++.||.+++.++. .++.+..++|+.......... ...++|+|+|++.+...
T Consensus 112 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------------------------~~~~~I~v~Tp~~l~~~ 165 (417)
T 2i4i_A 112 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDL--------------------------ERGCHLLVATPGRLVDM 165 (417)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHH--------------------------TTCCSEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHh--------------------------hCCCCEEEEChHHHHHH
Confidence 88899999999886 357888888876655443332 12578999999998653
Q ss_pred c--cccCCccceEEEecccccccCcc-cHHHHHHHh---cc---cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHH
Q 003450 421 S--ASLKPIKWQCMIVDEGHRLKNKD-SKLFSSLKQ---YS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEE 491 (819)
Q Consensus 421 ~--~~l~~~~~~~lIvDEaH~~kn~~-s~~~~~l~~---l~---~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~ 491 (819)
. ..+....+++||+||||++...+ ......+.. +. ....+++||||-. ++..++.
T Consensus 166 l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~------------ 229 (417)
T 2i4i_A 166 MERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPK----EIQMLAR------------ 229 (417)
T ss_dssp HHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCH----HHHHHHH------------
T ss_pred HHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCH----HHHHHHH------------
Confidence 2 22334467899999999985433 222233322 11 2457999999721 1100000
Q ss_pred HHHHHhccchHHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHH
Q 003450 492 FQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLIN 571 (819)
Q Consensus 492 f~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~ 571 (819)
. . +.... .+.+.-.. ....
T Consensus 230 ---~---------------~----------------~~~~~--~~~~~~~~------------------~~~~------- 248 (417)
T 2i4i_A 230 ---D---------------F----------------LDEYI--FLAVGRVG------------------STSE------- 248 (417)
T ss_dssp ---H---------------H----------------CSSCE--EEEEC----------------------CCS-------
T ss_pred ---H---------------H----------------cCCCE--EEEeCCCC------------------CCcc-------
Confidence 0 0 00000 00000000 0000
Q ss_pred HHHHHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeE
Q 003450 572 VVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQY 651 (819)
Q Consensus 572 ~~~~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~ 651 (819)
...+.+. ......|...+.+++... ..+.++|||++....++.+.+.|...|+.+
T Consensus 249 -------~i~~~~~-----------------~~~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~ 303 (417)
T 2i4i_A 249 -------NITQKVV-----------------WVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYAC 303 (417)
T ss_dssp -------SEEEEEE-----------------ECCGGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCE
T ss_pred -------CceEEEE-----------------EeccHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCe
Confidence 0000000 001234556666666543 247799999999999999999999999999
Q ss_pred EEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEE
Q 003450 652 ERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 731 (819)
Q Consensus 652 ~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~ 731 (819)
..++|+++.++|.++++.|+++... +|++|+++++|||++++++||+||+++++..+.|++||++|.|+.. .++.
T Consensus 304 ~~~h~~~~~~~r~~~~~~f~~g~~~---vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~ 378 (417)
T 2i4i_A 304 TSIHGDRSQRDREEALHQFRSGKSP---ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LATS 378 (417)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTSSC---EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCE--EEEE
T ss_pred eEecCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCc--eEEE
Confidence 9999999999999999999876544 7999999999999999999999999999999999999999999764 4455
Q ss_pred EEeCC
Q 003450 732 LITRG 736 (819)
Q Consensus 732 li~~~ 736 (819)
|++..
T Consensus 379 ~~~~~ 383 (417)
T 2i4i_A 379 FFNER 383 (417)
T ss_dssp EECGG
T ss_pred EEccc
Confidence 55543
No 26
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.97 E-value=1.8e-30 Score=288.02 Aligned_cols=315 Identities=16% Similarity=0.204 Sum_probs=113.2
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--CCCceEEEecC-cchHHHHHHHHHHcC--C
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWAP--Q 358 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~--~~~~~LIv~P~-~ll~qW~~e~~~~~p--~ 358 (819)
.+|+|||.+++.++ ..++++++.++||+|||++++..+...... ...++|||+|. .++.||.+++.++.+ +
T Consensus 42 ~~~~~~Q~~~i~~i----~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 117 (394)
T 1fuu_A 42 EEPSAIQQRAIMPI----IEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 117 (394)
T ss_dssp CSCCHHHHHHHHHH----HHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 36999999999987 346889999999999999866655554432 23499999997 888999999999874 5
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccceEEEecc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDE 436 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~lIvDE 436 (819)
+.+..++|........... ...+|+|+|++.+.... ..+...++++||+||
T Consensus 118 ~~~~~~~g~~~~~~~~~~~---------------------------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDE 170 (394)
T 1fuu_A 118 IKVHACIGGTSFVEDAEGL---------------------------RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 170 (394)
T ss_dssp CCEEEECSSCCHHHHHHHH---------------------------HHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred eeEEEEeCCCchHHHHhhc---------------------------CCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEC
Confidence 7788888876544332221 25689999999986432 233445789999999
Q ss_pred cccccCc--ccHHHHHHHhcc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHh
Q 003450 437 GHRLKNK--DSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (819)
Q Consensus 437 aH~~kn~--~s~~~~~l~~l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~ 513 (819)
||++.+. .......+..+. ...+++|||||-. ++. ..+.
T Consensus 171 ah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~----------------------------------~~~~ 212 (394)
T 1fuu_A 171 ADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPN----DVL----------------------------------EVTT 212 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCH----HHH----------------------------------HHHH
T ss_pred hHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCH----HHH----------------------------------HHHH
Confidence 9998443 233444444443 4568999999821 000 0000
Q ss_pred hHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCc
Q 003450 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (819)
Q Consensus 514 ~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~ 593 (819)
. .+.... .+.+.-..... .. +.+. +.
T Consensus 213 ~------------~~~~~~--~~~~~~~~~~~---~~-------------------------~~~~----~~-------- 238 (394)
T 1fuu_A 213 K------------FMRNPV--RILVKKDELTL---EG-------------------------IKQF----YV-------- 238 (394)
T ss_dssp H------------HCCSCE--EEEECC-----------------------------------------------------
T ss_pred H------------hcCCCe--EEEecCccccC---CC-------------------------ceEE----EE--------
Confidence 0 000000 01111000000 00 0000 00
Q ss_pred cCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCC
Q 003450 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (819)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~ 673 (819)
..-....|...+.+++... .+.++|||++....++.+.+.|...|+.+..++|+++..+|+++++.|+++
T Consensus 239 --------~~~~~~~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 308 (394)
T 1fuu_A 239 --------NVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG 308 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------EcCchhhHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCC
Confidence 0000122555566666553 356999999999999999999999999999999999999999999999765
Q ss_pred CCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCC
Q 003450 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (819)
Q Consensus 674 ~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~ 736 (819)
.. .+|++|.++++|+|++++++||++|++|++..+.|++||++|.|+...+. .|++.+
T Consensus 309 ~~---~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~--~~~~~~ 366 (394)
T 1fuu_A 309 SS---RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAI--NFVTNE 366 (394)
T ss_dssp ---------------------------------------------------------------
T ss_pred CC---cEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEE--EEEchh
Confidence 43 47999999999999999999999999999999999999999999876554 344444
No 27
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.96 E-value=1.2e-28 Score=275.21 Aligned_cols=314 Identities=14% Similarity=0.189 Sum_probs=220.6
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcC-CCeE
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMNV 361 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p-~~~v 361 (819)
.+|+|+|.+++..+ ..++++|+.++||+|||+.++..+.... .....+|||+|. .++.||.+++..+++ ++++
T Consensus 20 ~~~~~~Q~~~i~~i----~~~~~~lv~apTGsGKT~~~l~~~~~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v 94 (414)
T 3oiy_A 20 KDLTGYQRLWAKRI----VQGKSFTMVAPTGVGKTTFGMMTALWLA-RKGKKSALVFPTVTLVKQTLERLQKLADEKVKI 94 (414)
T ss_dssp SCCCHHHHHHHHHH----TTTCCEECCSCSSSSHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCE
T ss_pred CCCCHHHHHHHHHH----hcCCCEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEEEECCHHHHHHHHHHHHHHccCCceE
Confidence 45889999999877 5678999999999999997666655554 233589999997 888999999999985 7899
Q ss_pred EEEecChhHHH---HHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccc
Q 003450 362 VMYVGTSQARN---IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (819)
Q Consensus 362 ~~~~g~~~~r~---~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH 438 (819)
..++|+..... ..... ....++|+|+|++.+......+...++++||+||||
T Consensus 95 ~~~~g~~~~~~~~~~~~~l-------------------------~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH 149 (414)
T 3oiy_A 95 FGFYSSMKKEEKEKFEKSF-------------------------EEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVD 149 (414)
T ss_dssp EECCTTSCHHHHHHHHHHH-------------------------HHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHH
T ss_pred EEEECCCChhhHHHHHHHh-------------------------hcCCCCEEEECHHHHHHHHHHhccccccEEEEeChH
Confidence 99998876522 22221 113478999999999766555666689999999999
Q ss_pred cccC-------------cccH-HHHHHHhc------------ccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHH
Q 003450 439 RLKN-------------KDSK-LFSSLKQY------------STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEF 492 (819)
Q Consensus 439 ~~kn-------------~~s~-~~~~l~~l------------~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f 492 (819)
++.. .... ....+..+ .....+++||||......+.+
T Consensus 150 ~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~----------------- 212 (414)
T 3oiy_A 150 AVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------- 212 (414)
T ss_dssp HHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHH-----------------
T ss_pred hhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHH-----------------
Confidence 8632 2222 22333333 345678999997554432111
Q ss_pred HHHHhccchHHHHHHHHHHHhhHHHHHhhhhhhh--cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHH
Q 003450 493 QEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMK--ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLI 570 (819)
Q Consensus 493 ~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~dv~~--~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~ 570 (819)
...+.. -.+.. ..+...... .
T Consensus 213 ~~~~~~-----------------------~~~~~~~~~~~~i~~~-~--------------------------------- 235 (414)
T 3oiy_A 213 FRDLLN-----------------------FTVGRLVSVARNITHV-R--------------------------------- 235 (414)
T ss_dssp HHHHHS-----------------------CCSSCCCCCCCSEEEE-E---------------------------------
T ss_pred HHHhhc-----------------------cCcCccccccccchhe-e---------------------------------
Confidence 000000 00000 000000000 0
Q ss_pred HHHHHHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCe
Q 003450 571 NVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQ 650 (819)
Q Consensus 571 ~~~~~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~ 650 (819)
....|...|.+++.. .+.++|||++....++.+.+.|...|++
T Consensus 236 ----------------------------------~~~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~ 278 (414)
T 3oiy_A 236 ----------------------------------ISSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFN 278 (414)
T ss_dssp ----------------------------------ESSCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred ----------------------------------eccCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCc
Confidence 011345555666655 3689999999999999999999999999
Q ss_pred EE-EEeccCChHHHHHHHHHhcCCCCCcEEEEec----cccccccCCccc-CCEEEEeCCC--CCcchHHHHhHhhhhcC
Q 003450 651 YE-RIDGKVGGAERQIRIDRFNAKNSSRFCFLLS----TRAGGLGINLAT-ADTVIIYDSD--WNPHADLQAMARAHRLG 722 (819)
Q Consensus 651 ~~-~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~s----t~a~~~GinL~~-a~~VI~~d~~--wnp~~~~Qa~gR~~R~G 722 (819)
+. .++|. +|+ ++.|+++... +|++ |+++++|||+++ +++||+||+| +++..|.|++||++|.|
T Consensus 279 ~~~~~h~~----~r~--~~~f~~g~~~---vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g 349 (414)
T 3oiy_A 279 VGETWSEF----EKN--FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRIL 349 (414)
T ss_dssp EEESSSCH----HHH--HHHHHTTSCS---EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEE
T ss_pred eehhhcCc----chH--HHHHhCCCCe---EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCC
Confidence 98 88884 444 9999876544 6888 999999999999 9999999999 99999999999999999
Q ss_pred CC--CcEEEEEEEeCCCHHHHHHHHHHHhhh
Q 003450 723 QT--NKVMIFRLITRGSIEERMMQMTKKKMV 751 (819)
Q Consensus 723 q~--~~V~v~~li~~~TvEe~i~~~~~~K~~ 751 (819)
+. +.-.++.|+ -|...++..++...
T Consensus 350 ~~~~~~g~~i~~~----~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 350 NGVLVKGVSVIFE----EDEEIFESLKTRLL 376 (414)
T ss_dssp TTEECCEEEEEEC----CCHHHHHHHHHHHH
T ss_pred CCCCcceEEEEEE----ccHHHHHHHHHHhc
Confidence 86 566666666 24445555554443
No 28
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.96 E-value=2.7e-28 Score=272.22 Aligned_cols=327 Identities=14% Similarity=0.200 Sum_probs=216.9
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-C-CCceEEEecC-cchHHHHHHHHHHc---C
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-R-ISPHLVVAPL-STLRNWEREFATWA---P 357 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~-~-~~~~LIv~P~-~ll~qW~~e~~~~~---p 357 (819)
..|+|+|.+++..+... .++++|+.++||+|||++++..+...... . ..++|||+|. .++.||.+.+.++. +
T Consensus 46 ~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 123 (412)
T 3fht_A 46 NRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 123 (412)
T ss_dssp CSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcc
Confidence 36999999999877321 35899999999999999986665554433 2 2389999997 67788988888775 4
Q ss_pred CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc---cccCCccceEEEe
Q 003450 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQCMIV 434 (819)
Q Consensus 358 ~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~---~~l~~~~~~~lIv 434 (819)
+..+....|...... ......+|+|+|++.+.... ..+...++++||+
T Consensus 124 ~~~~~~~~~~~~~~~-----------------------------~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iVi 174 (412)
T 3fht_A 124 ELKLAYAVRGNKLER-----------------------------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 174 (412)
T ss_dssp TCCEEEECTTCCCCT-----------------------------TCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEE
T ss_pred cceEEEeecCcchhh-----------------------------hhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEE
Confidence 667766665533210 11235689999999996543 2333457899999
Q ss_pred cccccccCc--ccHHHHHH-Hhcc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHH
Q 003450 435 DEGHRLKNK--DSKLFSSL-KQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (819)
Q Consensus 435 DEaH~~kn~--~s~~~~~l-~~l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~ 510 (819)
||||++... .......+ ..+. ....+++||||-. ++..+.....+..
T Consensus 175 DEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~~~------------------------- 225 (412)
T 3fht_A 175 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED----SVWKFAQKVVPDP------------------------- 225 (412)
T ss_dssp ETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCH----HHHHHHHHHSSSC-------------------------
T ss_pred eCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCH----HHHHHHHHhcCCC-------------------------
Confidence 999998542 22233333 3333 3467999999831 1111000000000
Q ss_pred HHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCC
Q 003450 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (819)
Q Consensus 511 ~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~ 590 (819)
..+ .. .......+......+.+..
T Consensus 226 ----~~~-~~-~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 249 (412)
T 3fht_A 226 ----NVI-KL-KREEETLDTIKQYYVLCSS-------------------------------------------------- 249 (412)
T ss_dssp ----EEE-CC-CGGGSSCTTEEEEEEECSS--------------------------------------------------
T ss_pred ----eEE-ee-ccccccccCceEEEEEcCC--------------------------------------------------
Confidence 000 00 0000000111111111100
Q ss_pred CCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHh
Q 003450 591 PDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRF 670 (819)
Q Consensus 591 ~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F 670 (819)
...|+..+.+++... .+.++|||++....++.+.+.|...|+.+..++|+++..+|.++++.|
T Consensus 250 ---------------~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 312 (412)
T 3fht_A 250 ---------------RDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 312 (412)
T ss_dssp ---------------HHHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHH
Confidence 123455555555543 467999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCc------chHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHH
Q 003450 671 NAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNP------HADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQ 744 (819)
Q Consensus 671 ~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp------~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~ 744 (819)
+++... +|++|.++++|||++++++||+||++|++ ..+.|++||++|.|+...+ +.|+.. .-+..++.
T Consensus 313 ~~g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~-~~~~~~~~ 386 (412)
T 3fht_A 313 REGKEK---VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA--VNMVDS-KHSMNILN 386 (412)
T ss_dssp HTTSCS---EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEE--EEEECS-HHHHHHHH
T ss_pred HCCCCc---EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceE--EEEEcC-hhhHHHHH
Confidence 876543 79999999999999999999999999876 5999999999999976544 444433 23345554
Q ss_pred HHHHh
Q 003450 745 MTKKK 749 (819)
Q Consensus 745 ~~~~K 749 (819)
..+++
T Consensus 387 ~i~~~ 391 (412)
T 3fht_A 387 RIQEH 391 (412)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 29
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.96 E-value=2.3e-28 Score=279.17 Aligned_cols=305 Identities=18% Similarity=0.162 Sum_probs=215.2
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEE
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~ 362 (819)
.+++|+|.+++..+ ..++++++.++||+|||+.++..+.. . .+.+|||+|. +++.||.+.+..+ ++.+.
T Consensus 24 ~~~r~~Q~~~i~~i----l~g~d~lv~apTGsGKTl~~~lp~l~--~--~g~~lvi~P~~aL~~q~~~~l~~~--gi~~~ 93 (523)
T 1oyw_A 24 QQFRPGQEEIIDTV----LSGRDCLVVMPTGGGKSLCYQIPALL--L--NGLTVVVSPLISLMKDQVDQLQAN--GVAAA 93 (523)
T ss_dssp SSCCTTHHHHHHHH----HTTCCEEEECSCHHHHHHHHHHHHHH--S--SSEEEEECSCHHHHHHHHHHHHHT--TCCEE
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEECCCCcHHHHHHHHHHHH--h--CCCEEEECChHHHHHHHHHHHHHc--CCcEE
Confidence 36899999999987 46789999999999999876544332 2 3589999997 8889999999886 56777
Q ss_pred EEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--ccccCCccceEEEecccccc
Q 003450 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRL 440 (819)
Q Consensus 363 ~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~lIvDEaH~~ 440 (819)
.++|............ .......+++++|++.+... ...+...++++|||||||.+
T Consensus 94 ~l~~~~~~~~~~~~~~----------------------~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i 151 (523)
T 1oyw_A 94 CLNSTQTREQQLEVMT----------------------GCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCI 151 (523)
T ss_dssp EECTTSCHHHHHHHHH----------------------HHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGG
T ss_pred EEeCCCCHHHHHHHHH----------------------HHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcccc
Confidence 7777654332211110 00123578999999998643 23344568899999999998
Q ss_pred cCcc---cHHHH----HHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHh
Q 003450 441 KNKD---SKLFS----SLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (819)
Q Consensus 441 kn~~---s~~~~----~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~ 513 (819)
...+ ...+. ....+....+++|||||......++...+.+-++..+..
T Consensus 152 ~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~------------------------- 206 (523)
T 1oyw_A 152 SQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS------------------------- 206 (523)
T ss_dssp CTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC-------------------------
T ss_pred CcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC-------------------------
Confidence 5432 11222 233345567899999995433333333322211100000
Q ss_pred hHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCc
Q 003450 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (819)
Q Consensus 514 ~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~ 593 (819)
. ..-|.....+.
T Consensus 207 ---------~--~~r~~l~~~v~--------------------------------------------------------- 218 (523)
T 1oyw_A 207 ---------S--FDRPNIRYMLM--------------------------------------------------------- 218 (523)
T ss_dssp ---------C--CCCTTEEEEEE---------------------------------------------------------
T ss_pred ---------C--CCCCceEEEEE---------------------------------------------------------
Confidence 0 00000000000
Q ss_pred cCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCC
Q 003450 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (819)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~ 673 (819)
....++..|.+++... .+.++||||+.+...+.+.+.|...|+.+..++|+++.++|+++++.|.++
T Consensus 219 -----------~~~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g 285 (523)
T 1oyw_A 219 -----------EKFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRD 285 (523)
T ss_dssp -----------ECSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred -----------eCCCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC
Confidence 0123444445555432 578999999999999999999999999999999999999999999999876
Q ss_pred CCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEE
Q 003450 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (819)
Q Consensus 674 ~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v 729 (819)
... +|++|.++|+|||+++++.||++++|+|+..+.|++||++|.|+...+.+
T Consensus 286 ~~~---vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 286 DLQ---IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp SCS---EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred CCe---EEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEE
Confidence 543 79999999999999999999999999999999999999999998766544
No 30
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.96 E-value=8.9e-28 Score=276.95 Aligned_cols=311 Identities=16% Similarity=0.143 Sum_probs=211.2
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEE
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~ 362 (819)
.+++|+|.+++..+ ..++++++.++||+|||+.++..+. . ..+.+|||+|. +|+.||.+.+..+ ++.+.
T Consensus 43 ~~~rp~Q~~~i~~i----l~g~d~lv~~pTGsGKTl~~~lpal--~--~~g~~lVisP~~~L~~q~~~~l~~~--gi~~~ 112 (591)
T 2v1x_A 43 EKFRPLQLETINVT----MAGKEVFLVMPTGGGKSLCYQLPAL--C--SDGFTLVICPLISLMEDQLMVLKQL--GISAT 112 (591)
T ss_dssp CSCCTTHHHHHHHH----HTTCCEEEECCTTSCTTHHHHHHHH--T--SSSEEEEECSCHHHHHHHHHHHHHH--TCCEE
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEECCCChHHHHHHHHHH--H--cCCcEEEEeCHHHHHHHHHHHHHhc--CCcEE
Confidence 36999999999877 4578999999999999987654443 2 23589999996 8889999999997 67777
Q ss_pred EEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc---cc----ccCCccceEEEec
Q 003450 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---SA----SLKPIKWQCMIVD 435 (819)
Q Consensus 363 ~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~---~~----~l~~~~~~~lIvD 435 (819)
.++|+.........+.. ........+|+++|++.+... .. .+...++++||||
T Consensus 113 ~l~~~~~~~~~~~~~~~--------------------l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViD 172 (591)
T 2v1x_A 113 MLNASSSKEHVKWVHAE--------------------MVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVD 172 (591)
T ss_dssp ECCSSCCHHHHHHHHHH--------------------HHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEeCCCCHHHHHHHHHH--------------------hhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEE
Confidence 77776544322111100 000124678999999987531 11 1223378999999
Q ss_pred ccccccCcc-------cHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHH
Q 003450 436 EGHRLKNKD-------SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (819)
Q Consensus 436 EaH~~kn~~-------s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l 508 (819)
|||.+...+ ..+......+....+++|||||-.....++...+..-.+..+..
T Consensus 173 EAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-------------------- 232 (591)
T 2v1x_A 173 EVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-------------------- 232 (591)
T ss_dssp TGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC--------------------
T ss_pred CcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec--------------------
Confidence 999975422 12222233345667899999984222222222221110000000
Q ss_pred HHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCC
Q 003450 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (819)
Q Consensus 509 ~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~ 588 (819)
...-|.....+...
T Consensus 233 ----------------~~~r~nl~~~v~~~-------------------------------------------------- 246 (591)
T 2v1x_A 233 ----------------SFNRPNLYYEVRQK-------------------------------------------------- 246 (591)
T ss_dssp ----------------CCCCTTEEEEEEEC--------------------------------------------------
T ss_pred ----------------CCCCcccEEEEEeC--------------------------------------------------
Confidence 00011111111100
Q ss_pred CCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHh--cCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHH
Q 003450 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKE--QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (819)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~--~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~ 666 (819)
.+.+...+..++..+.. .+.++||||..+...+.|.+.|...|+.+..++|+++..+|.++
T Consensus 247 -----------------~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~ 309 (591)
T 2v1x_A 247 -----------------PSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTV 309 (591)
T ss_dssp -----------------CSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH
T ss_pred -----------------CCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHH
Confidence 01111222222222221 47899999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEE
Q 003450 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (819)
Q Consensus 667 i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~ 730 (819)
++.|.++... +||+|.++|+|||+++++.||+|++|+++..|.|++||++|.|+...+.++
T Consensus 310 ~~~F~~g~~~---VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 310 HRKWSANEIQ---VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp HHHHHTTSSS---EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred HHHHHcCCCe---EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 9999876543 899999999999999999999999999999999999999999987665544
No 31
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.95 E-value=1.5e-26 Score=269.11 Aligned_cols=324 Identities=15% Similarity=0.197 Sum_probs=210.6
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH-hcCC-----CCceEEEecC-cchHHHHHHHHHHc-
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL-FGER-----ISPHLVVAPL-STLRNWEREFATWA- 356 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l-~~~~-----~~~~LIv~P~-~ll~qW~~e~~~~~- 356 (819)
+|+|+|.+++..+.. ..++++|+.++||+|||++++..+... .... ...+|||+|. .|+.||.+++.++.
T Consensus 43 ~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~ 120 (579)
T 3sqw_A 43 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 120 (579)
T ss_dssp SCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHh
Confidence 599999999987631 157789999999999999866555443 3221 2379999997 78899999999864
Q ss_pred -----CCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccc---cCCcc
Q 003450 357 -----PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS---LKPIK 428 (819)
Q Consensus 357 -----p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~---l~~~~ 428 (819)
+...+....|............ ...++|+|+|++.+...... ...-.
T Consensus 121 ~~~~~~~~~~~~~~gg~~~~~~~~~l~-------------------------~~~~~IlV~Tp~~l~~~l~~~~~~~~~~ 175 (579)
T 3sqw_A 121 MNYGLKKYACVSLVGGTDFRAAMNKMN-------------------------KLRPNIVIATPGRLIDVLEKYSNKFFRF 175 (579)
T ss_dssp HCGGGTTSCEEEECTTSCHHHHHHHHH-------------------------HHCCSEEEECHHHHHHHHHHHHHHHCTT
T ss_pred hcccccceEEEEEECCccHHHHHHHHh-------------------------cCCCCEEEECHHHHHHHHHhcccccccc
Confidence 4567777777765554433321 13578999999998643221 12235
Q ss_pred ceEEEecccccccCcc--cHHHHHHHhc---c-----cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhc
Q 003450 429 WQCMIVDEGHRLKNKD--SKLFSSLKQY---S-----TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD 498 (819)
Q Consensus 429 ~~~lIvDEaH~~kn~~--s~~~~~l~~l---~-----~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~ 498 (819)
+++|||||||++...+ ......+..+ . ....+++|||+-. .+.++. ..+......
T Consensus 176 ~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~~~---~~~l~~~~~----------- 240 (579)
T 3sqw_A 176 VDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQKLA---NNIMNKKEC----------- 240 (579)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHHHT---TTTCCSSEE-----------
T ss_pred CCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCCh-HHHHHH---HHHcCCCce-----------
Confidence 7899999999986543 2222222222 1 3468999999731 111111 000000000
Q ss_pred cchHHHHHHHHHHHhhHHHHHhhhhhhhcCCCc-eEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHH
Q 003450 499 INQEEQISRLHRMLAPHLLRRVKKDVMKELPPK-KELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELR 577 (819)
Q Consensus 499 ~~~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~-~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr 577 (819)
..+. ............ ....+.++-.
T Consensus 241 ----------------~~~~-~~~~~~~~~~~~i~~~~~~~~~~------------------------------------ 267 (579)
T 3sqw_A 241 ----------------LFLD-TVDKNEPEAHERIDQSVVISEKF------------------------------------ 267 (579)
T ss_dssp ----------------EEEE-SSCSSSCSSCTTEEEEEEEESST------------------------------------
T ss_pred ----------------EEEe-ecCccccccccccceEEEEecch------------------------------------
Confidence 0000 000000000000 0001111000
Q ss_pred HhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHH--hcCceEEEEecchhHHHHHHHHHhhC---CCeEE
Q 003450 578 KLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFK---KWQYE 652 (819)
Q Consensus 578 ~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~--~~g~kvlIFs~~~~~ld~L~~~L~~~---g~~~~ 652 (819)
...+...+..++..+. ..+.++|||++....++.+.+.|... |+++.
T Consensus 268 ----------------------------~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~ 319 (579)
T 3sqw_A 268 ----------------------------ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPIL 319 (579)
T ss_dssp ----------------------------THHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEE
T ss_pred ----------------------------hhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEE
Confidence 0112222333333333 34779999999999999999999876 99999
Q ss_pred EEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEE
Q 003450 653 RIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRL 732 (819)
Q Consensus 653 ~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l 732 (819)
.++|+++..+|.++++.|.++.. .+|++|.++++|||++.+++||++|+|+++..++|++||++|.|+...+. .|
T Consensus 320 ~~hg~~~~~~R~~~~~~F~~g~~---~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i--~~ 394 (579)
T 3sqw_A 320 EFHGKITQNKRTSLVKRFKKDES---GILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSV--LF 394 (579)
T ss_dssp EESTTSCHHHHHHHHHHHHHCSS---EEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEE--EE
T ss_pred EecCCCCHHHHHHHHHHhhcCCC---eEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEE--EE
Confidence 99999999999999999987543 48999999999999999999999999999999999999999999765443 44
Q ss_pred EeCC
Q 003450 733 ITRG 736 (819)
Q Consensus 733 i~~~ 736 (819)
++..
T Consensus 395 ~~~~ 398 (579)
T 3sqw_A 395 ICKD 398 (579)
T ss_dssp EEGG
T ss_pred Eccc
Confidence 4543
No 32
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.95 E-value=1.5e-26 Score=285.09 Aligned_cols=308 Identities=17% Similarity=0.196 Sum_probs=216.1
Q ss_pred CCCchhHHHHHHHHHHhhcCCC--ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCC--
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ-- 358 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~--~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~-- 358 (819)
.+++|+|.+++..+...+..++ ++|++++||+|||.+++..+......+ .++||+||+ .+..||.++|.+++++
T Consensus 602 ~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g-~~vlvlvPt~~La~Q~~~~~~~~~~~~~ 680 (1151)
T 2eyq_A 602 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH-KQVAVLVPTTLLAQQHYDNFRDRFANWP 680 (1151)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT-CEEEEECSSHHHHHHHHHHHHHHSTTTT
T ss_pred CCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC-CeEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 5689999999999877666665 899999999999999876655544433 489999997 5778999999988864
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH 438 (819)
.++..++|............ .......+|+|+|++.+... +.-.++++|||||+|
T Consensus 681 i~v~~l~~~~~~~~~~~~~~----------------------~l~~g~~dIvV~T~~ll~~~---~~~~~l~lvIiDEaH 735 (1151)
T 2eyq_A 681 VRIEMISRFRSAKEQTQILA----------------------EVAEGKIDILIGTHKLLQSD---VKFKDLGLLIVDEEH 735 (1151)
T ss_dssp CCEEEESTTSCHHHHHHHHH----------------------HHHTTCCSEEEECTHHHHSC---CCCSSEEEEEEESGG
T ss_pred CeEEEEeCCCCHHHHHHHHH----------------------HHhcCCCCEEEECHHHHhCC---ccccccceEEEechH
Confidence 56777776443322111110 00124678999999988643 233478999999999
Q ss_pred cccCcccHHHHHHHhccc-CcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHHH
Q 003450 439 RLKNKDSKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (819)
Q Consensus 439 ~~kn~~s~~~~~l~~l~~-~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~l 517 (819)
++. ......+..+.. .++++|||||+.+.+.....-+
T Consensus 736 ~~g---~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~--------------------------------------- 773 (1151)
T 2eyq_A 736 RFG---VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM--------------------------------------- 773 (1151)
T ss_dssp GSC---HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTT---------------------------------------
T ss_pred hcC---hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcC---------------------------------------
Confidence 973 344555555544 5789999999644321111100
Q ss_pred HHhhhhhhhcCCCceE---EEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCcc
Q 003450 518 RRVKKDVMKELPPKKE---LILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (819)
Q Consensus 518 rr~k~dv~~~lp~~~~---~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~ 594 (819)
........|+... .......
T Consensus 774 ---~~~~~i~~~~~~r~~i~~~~~~~------------------------------------------------------ 796 (1151)
T 2eyq_A 774 ---RDLSIIATPPARRLAVKTFVREY------------------------------------------------------ 796 (1151)
T ss_dssp ---SEEEECCCCCCBCBCEEEEEEEC------------------------------------------------------
T ss_pred ---CCceEEecCCCCccccEEEEecC------------------------------------------------------
Confidence 0000001111110 0000111
Q ss_pred CcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhC--CCeEEEEeccCChHHHHHHHHHhcC
Q 003450 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNA 672 (819)
Q Consensus 595 ~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~--g~~~~~l~G~~~~~~R~~~i~~F~~ 672 (819)
.+......++..+ ..|.+++|||+....++.+.+.|... ++.+..++|.++..+|++++++|++
T Consensus 797 -------------~~~~i~~~il~~l-~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~ 862 (1151)
T 2eyq_A 797 -------------DSMVVREAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 862 (1151)
T ss_dssp -------------CHHHHHHHHHHHH-TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHT
T ss_pred -------------CHHHHHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHc
Confidence 1111222233332 35789999999999999999999876 8899999999999999999999987
Q ss_pred CCCCcEEEEeccccccccCCcccCCEEEEeCC-CCCcchHHHHhHhhhhcCCCCcEEEEEEEeC
Q 003450 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDS-DWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (819)
Q Consensus 673 ~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~-~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~ 735 (819)
+... +|++|.++++|||++++++||++++ .|++..+.|++||++|.|+.. .+|.++..
T Consensus 863 g~~~---VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g--~~~ll~~~ 921 (1151)
T 2eyq_A 863 QRFN---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLTPH 921 (1151)
T ss_dssp TSCC---EEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCE--EEEEEECC
T ss_pred CCCc---EEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCce--EEEEEECC
Confidence 5443 8999999999999999999999999 689999999999999998654 44555554
No 33
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.95 E-value=5e-26 Score=264.49 Aligned_cols=332 Identities=16% Similarity=0.196 Sum_probs=211.8
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH-hcCC-----CCceEEEecC-cchHHHHHHHHHHc-
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL-FGER-----ISPHLVVAPL-STLRNWEREFATWA- 356 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l-~~~~-----~~~~LIv~P~-~ll~qW~~e~~~~~- 356 (819)
+|+|+|.+++..+.. ..++++|+.++||+|||++++..+... .... ..++|||+|. .|+.||.+++.++.
T Consensus 94 ~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~ 171 (563)
T 3i5x_A 94 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 171 (563)
T ss_dssp SCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 599999999987631 156789999999999999866655443 3222 2379999996 88899999998863
Q ss_pred -----CCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccc---cCCcc
Q 003450 357 -----PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS---LKPIK 428 (819)
Q Consensus 357 -----p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~---l~~~~ 428 (819)
+...+..+.|............ ...++|+|+|++.+...... ...-.
T Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------------------~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 226 (563)
T 3i5x_A 172 MNYGLKKYACVSLVGGTDFRAAMNKMN-------------------------KLRPNIVIATPGRLIDVLEKYSNKFFRF 226 (563)
T ss_dssp HCGGGTTSCEEEECTTSCHHHHHHHHH-------------------------HHCCSEEEECHHHHHHHHHHHHHHHCTT
T ss_pred hccccCceeEEEEECCcCHHHHHHHHh-------------------------cCCCCEEEECcHHHHHHHHhcccccccc
Confidence 3456777777765544333321 13578999999998643221 11224
Q ss_pred ceEEEecccccccCcc--cHHH---HHHHhcc-----cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhc
Q 003450 429 WQCMIVDEGHRLKNKD--SKLF---SSLKQYS-----TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD 498 (819)
Q Consensus 429 ~~~lIvDEaH~~kn~~--s~~~---~~l~~l~-----~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~ 498 (819)
+++|||||||++...+ .... ..+.... ....+++|||+-. .+.++. ..+......
T Consensus 227 ~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~~~---~~~~~~~~~----------- 291 (563)
T 3i5x_A 227 VDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQKLA---NNIMNKKEC----------- 291 (563)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHHHT---TTTCCSSEE-----------
T ss_pred ceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCH-HHHHHH---HHhcCCCce-----------
Confidence 7899999999986533 1222 2222221 3358999999731 111111 000000000
Q ss_pred cchHHHHHHHHHHHhhHHHHHhhhhhhhcCCC-ceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHH
Q 003450 499 INQEEQISRLHRMLAPHLLRRVKKDVMKELPP-KKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELR 577 (819)
Q Consensus 499 ~~~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~-~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr 577 (819)
..+ ............ .....+.++-.
T Consensus 292 ----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 318 (563)
T 3i5x_A 292 ----------------LFL-DTVDKNEPEAHERIDQSVVISEKF------------------------------------ 318 (563)
T ss_dssp ----------------EEE-ESSCSSSCSSCTTEEEEEEEESST------------------------------------
T ss_pred ----------------EEE-eccCCCCccccccCceEEEECchh------------------------------------
Confidence 000 000000000000 00001111100
Q ss_pred HhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHH--hcCceEEEEecchhHHHHHHHHHhhC---CCeEE
Q 003450 578 KLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFK---KWQYE 652 (819)
Q Consensus 578 ~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~--~~g~kvlIFs~~~~~ld~L~~~L~~~---g~~~~ 652 (819)
.......+..+...+. ..+.++|||++.....+.+.+.|... |+++.
T Consensus 319 ----------------------------~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~ 370 (563)
T 3i5x_A 319 ----------------------------ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPIL 370 (563)
T ss_dssp ----------------------------THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEE
T ss_pred ----------------------------HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEE
Confidence 0001112222222222 34789999999999999999999875 99999
Q ss_pred EEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEE
Q 003450 653 RIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRL 732 (819)
Q Consensus 653 ~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l 732 (819)
.++|+++..+|..+++.|+++.. .+||+|.++++|||++++++||+||+|+++..++|++||++|.|+...+ +.|
T Consensus 371 ~~h~~~~~~~R~~~~~~f~~g~~---~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~--i~~ 445 (563)
T 3i5x_A 371 EFHGKITQNKRTSLVKRFKKDES---GILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSS--VLF 445 (563)
T ss_dssp EESTTSCHHHHHHHHHHHHHCSS---EEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEE--EEE
T ss_pred EecCCCCHHHHHHHHHHHhcCCC---CEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceE--EEE
Confidence 99999999999999999987543 4899999999999999999999999999999999999999999865444 445
Q ss_pred EeCCCHHHHHHHHH
Q 003450 733 ITRGSIEERMMQMT 746 (819)
Q Consensus 733 i~~~TvEe~i~~~~ 746 (819)
++.. |...++.+
T Consensus 446 ~~~~--e~~~~~~l 457 (563)
T 3i5x_A 446 ICKD--ELPFVREL 457 (563)
T ss_dssp EEGG--GHHHHHHH
T ss_pred Echh--HHHHHHHH
Confidence 5544 33444443
No 34
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.94 E-value=1e-27 Score=273.95 Aligned_cols=304 Identities=17% Similarity=0.223 Sum_probs=186.9
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC--CCceEEEecC-cchHHHHHHHHHHcCCCeE
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPL-STLRNWEREFATWAPQMNV 361 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~--~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v 361 (819)
.|+|+|.+++..+... .++++|+.++||+|||++++..+...+... ..++||++|. .++.||.+++.+++....+
T Consensus 141 ~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~ 218 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 218 (508)
T ss_dssp ECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSC
T ss_pred CcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCe
Confidence 5899999999877322 248999999999999999776666554433 3389999996 6889999999999865443
Q ss_pred EEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--ccccCCccceEEEeccccc
Q 003450 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHR 439 (819)
Q Consensus 362 ~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~lIvDEaH~ 439 (819)
.+..+...... ......++|+|+|++.+... ...+....+++||+||||+
T Consensus 219 ~~~~~~~~~~~----------------------------~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~ 270 (508)
T 3fho_A 219 KTAFGIKDSVP----------------------------KGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADN 270 (508)
T ss_dssp CEEC--------------------------------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHH
T ss_pred eEEEEeCCccc----------------------------ccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhh
Confidence 33332221110 00113678999999988653 2233345689999999999
Q ss_pred ccCc---ccHHHHHHHhcc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhH
Q 003450 440 LKNK---DSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPH 515 (819)
Q Consensus 440 ~kn~---~s~~~~~l~~l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~ 515 (819)
+... .......+..+. ....++|||||-. ...++. ..+.
T Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~-~~~~~~------------------~~~~------------------ 313 (508)
T 3fho_A 271 MLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSE-RVEKYA------------------ERFA------------------ 313 (508)
T ss_dssp HTTC--CHHHHHHHHHHSCTTCEEEEEESCCST-HHHHHH------------------HHHS------------------
T ss_pred hcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCH-HHHHHH------------------HHhc------------------
Confidence 8542 223333333444 3456999999821 111111 0000
Q ss_pred HHHHhhhhhhhcCC-------CceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCC
Q 003450 516 LLRRVKKDVMKELP-------PKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (819)
Q Consensus 516 ~lrr~k~dv~~~lp-------~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~ 588 (819)
.......+. ......+.+.
T Consensus 314 -----~~~~~i~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 339 (508)
T 3fho_A 314 -----PNANEIRLKTEELSVEGIKQLYMDCQ------------------------------------------------- 339 (508)
T ss_dssp -----TTCEEECCCCCC----CCCCEEEEC--------------------------------------------------
T ss_pred -----CCCeEEEeccccCCcccceEEEEECC-------------------------------------------------
Confidence 000000000 0000000000
Q ss_pred CCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHH
Q 003450 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (819)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~ 668 (819)
....|...+.+++... .+.++||||+....++.+.+.|...|+.+..++|+++..+|+.+++
T Consensus 340 ----------------~~~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~ 401 (508)
T 3fho_A 340 ----------------SEEHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMD 401 (508)
T ss_dssp -----------------CHHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTH
T ss_pred ----------------chHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Confidence 1223445555555443 4679999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCC------CCcchHHHHhHhhhhcCCCCcEEEE
Q 003450 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD------WNPHADLQAMARAHRLGQTNKVMIF 730 (819)
Q Consensus 669 ~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~------wnp~~~~Qa~gR~~R~Gq~~~V~v~ 730 (819)
.|+++... +|++|.++++|+|++++++||++|++ +++..+.|++||++|.|+...+.++
T Consensus 402 ~f~~g~~~---VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 402 SFRVGTSK---VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp HHHSSSCC---CCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred HHHCCCCe---EEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 99876543 79999999999999999999999999 7899999999999999976655444
No 35
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.1e-25 Score=273.37 Aligned_cols=356 Identities=15% Similarity=0.141 Sum_probs=222.9
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeE
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNV 361 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v 361 (819)
+.+|+|||.+++..+ ..+++++++++||+|||+++...+...... ..++||++|. .|..||.++|..+++ .+
T Consensus 84 ~f~L~~~Q~eai~~l----~~g~~vLV~apTGSGKTlva~lai~~~l~~-g~rvL~l~PtkaLa~Q~~~~l~~~~~--~v 156 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLKN-KQRVIYTSPIKALSNQKYRELLAEFG--DV 156 (1010)
T ss_dssp SSCCCHHHHHHHHHH----HHTCEEEEECCTTSCHHHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHHS--CE
T ss_pred CCCCCHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHhcc-CCeEEEECChHHHHHHHHHHHHHHhC--CE
Confidence 357999999999987 567899999999999999986655554433 3589999997 888999999999885 67
Q ss_pred EEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccceEEEeccccc
Q 003450 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEGHR 439 (819)
Q Consensus 362 ~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~lIvDEaH~ 439 (819)
..++|+.... ...+|+|+|++.+.... ......++++|||||+|+
T Consensus 157 glltGd~~~~---------------------------------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~ 203 (1010)
T 2xgj_A 157 GLMTGDITIN---------------------------------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY 203 (1010)
T ss_dssp EEECSSCEEC---------------------------------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGG
T ss_pred EEEeCCCccC---------------------------------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhh
Confidence 7777754321 24689999999886431 112234788999999999
Q ss_pred ccCcc--cHHHHHHHhcc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHH
Q 003450 440 LKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (819)
Q Consensus 440 ~kn~~--s~~~~~l~~l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~ 516 (819)
+.+.. ......+..+. ....++||||+- +..+ |..++.. ...
T Consensus 204 l~d~~rg~~~e~il~~l~~~~~il~LSATi~--n~~e------------------~a~~l~~------------~~~--- 248 (1010)
T 2xgj_A 204 MRDKERGVVWEETIILLPDKVRYVFLSATIP--NAME------------------FAEWICK------------IHS--- 248 (1010)
T ss_dssp GGCTTTHHHHHHHHHHSCTTCEEEEEECCCT--THHH------------------HHHHHHH------------HHT---
T ss_pred hcccchhHHHHHHHHhcCCCCeEEEEcCCCC--CHHH------------------HHHHHHh------------hcC---
Confidence 97653 23333444454 457799999952 2222 2221110 000
Q ss_pred HHHhhhhhhh-cCCCceEEEEEe-c-------CCH---HHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-hcCCC
Q 003450 517 LRRVKKDVMK-ELPPKKELILRV-E-------LSS---KQKEYYKAILTRNYQILTRRGGAQISLINVVMELRK-LCCHP 583 (819)
Q Consensus 517 lrr~k~dv~~-~lp~~~~~~v~~-~-------ls~---~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~-~~~hp 583 (819)
.....+.. .-|......+.. . +.. .....|..... .+.. ....|
T Consensus 249 --~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~l~~~~~~~~ 305 (1010)
T 2xgj_A 249 --QPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMA---------------------SISNQIGDDP 305 (1010)
T ss_dssp --SCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHH---------------------TCC-------
T ss_pred --CCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHH---------------------HHhhhhcccc
Confidence 00000000 111111111111 0 000 00000110000 0000 00000
Q ss_pred cccCCCCCCccCcHHHHHHhhhc-Cch---HHHHHHHHHHHHhc-CceEEEEecchhHHHHHHHHHhhCCCe--------
Q 003450 584 YMLEGVEPDIEDTNESFKQLLES-SGK---LQLLDKMMVKLKEQ-GHRVLIYSQFQHMLDLLEDYLTFKKWQ-------- 650 (819)
Q Consensus 584 ~l~~~~~~~~~~~~~~~~~l~~~-s~K---l~~l~~ll~~l~~~-g~kvlIFs~~~~~ld~L~~~L~~~g~~-------- 650 (819)
. ...+. ......... ..+ ...+..++..+... +.++|||+......+.+...|...|+.
T Consensus 306 ~---~~~~~-----g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i 377 (1010)
T 2xgj_A 306 N---STDSR-----GKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEAL 377 (1010)
T ss_dssp -------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHH
T ss_pred c---ccccc-----cccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHH
Confidence 0 00000 000000000 000 23344555555444 459999999999999999888765542
Q ss_pred -------------------------------EEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEE
Q 003450 651 -------------------------------YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (819)
Q Consensus 651 -------------------------------~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~V 699 (819)
+..++|+++..+|+.+++.|+++.-. +|++|.++++|||+++++.|
T Consensus 378 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ik---VLVAT~~la~GIDiP~~~vV 454 (1010)
T 2xgj_A 378 TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVV 454 (1010)
T ss_dssp HHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCS---EEEEEGGGGGSTTCCBSEEE
T ss_pred HHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCc---EEEEehHhhccCCCCCceEE
Confidence 78899999999999999999875443 89999999999999999999
Q ss_pred EE----eCC----CCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 003450 700 II----YDS----DWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 747 (819)
Q Consensus 700 I~----~d~----~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~ 747 (819)
|. ||. ++++..+.|++||++|.|+.....+|.+++.+.-++.+.++..
T Consensus 455 I~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~ 510 (1010)
T 2xgj_A 455 FTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVK 510 (1010)
T ss_dssp ESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHS
T ss_pred EeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHh
Confidence 99 999 8999999999999999999888899999987744444444433
No 36
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.94 E-value=7.7e-27 Score=265.67 Aligned_cols=309 Identities=15% Similarity=0.224 Sum_probs=105.6
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-C-CceEEEecC-cchHHHHHHHHHH---cC
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-I-SPHLVVAPL-STLRNWEREFATW---AP 357 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~-~-~~~LIv~P~-~ll~qW~~e~~~~---~p 357 (819)
..|+|+|.+++..+.. ..++++|+.++||+|||++++..+....... . ..+|||+|. .|..||.+.+.++ .+
T Consensus 113 ~~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 190 (479)
T 3fmp_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (479)
T ss_dssp CSCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCC
Confidence 3699999999987732 1348899999999999998766555444332 2 279999997 6778887776665 45
Q ss_pred CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc---cccCCccceEEEe
Q 003450 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQCMIV 434 (819)
Q Consensus 358 ~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~---~~l~~~~~~~lIv 434 (819)
++.+....|...... ......+|+|+|++.+.... ..+...++++|||
T Consensus 191 ~~~~~~~~~~~~~~~-----------------------------~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 191 ELKLAYAVRGNKLER-----------------------------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp TCCEEEESTTCCCCT-----------------------------TCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEE
T ss_pred CceEEEEeCCccccc-----------------------------cccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEE
Confidence 677776665532210 11235689999999996543 2333357899999
Q ss_pred cccccccCcc--cHHHHHHHh-cc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHH
Q 003450 435 DEGHRLKNKD--SKLFSSLKQ-YS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (819)
Q Consensus 435 DEaH~~kn~~--s~~~~~l~~-l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~ 510 (819)
||||++.... ......+.. +. ....+++||||-. +++.+.
T Consensus 242 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~----~~~~~~-------------------------------- 285 (479)
T 3fmp_B 242 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED----SVWKFA-------------------------------- 285 (479)
T ss_dssp CCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCH----HHHHHH--------------------------------
T ss_pred ECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCH----HHHHHH--------------------------------
Confidence 9999985422 222223333 32 3467999999821 111000
Q ss_pred HHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCC
Q 003450 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (819)
Q Consensus 511 ~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~ 590 (819)
. ..+|.... +.+ ....... . .+.+. ++.
T Consensus 286 --~------------~~~~~~~~--i~~--~~~~~~~-~-------------------------~~~~~----~~~---- 313 (479)
T 3fmp_B 286 --Q------------KVVPDPNV--IKL--KREEETL-D-------------------------TIKQY----YVL---- 313 (479)
T ss_dssp --H------------HHSSSEEE--EEE--C-------------------------------------------------
T ss_pred --H------------HHcCCCeE--Eec--cccccCc-C-------------------------CceEE----EEE----
Confidence 0 01121111 111 1110000 0 00000 000
Q ss_pred CCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHh
Q 003450 591 PDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRF 670 (819)
Q Consensus 591 ~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F 670 (819)
.-....|+..|..++... .+.++||||+.....+.+.+.|...|+.+..++|+++..+|..+++.|
T Consensus 314 ------------~~~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f 379 (479)
T 3fmp_B 314 ------------CSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 379 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------eCCHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHH
Confidence 001234555566665543 356899999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCc------chHHHHhHhhhhcCCCCcEE
Q 003450 671 NAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNP------HADLQAMARAHRLGQTNKVM 728 (819)
Q Consensus 671 ~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp------~~~~Qa~gR~~R~Gq~~~V~ 728 (819)
+++.. .+|++|.++++|||++++++||+||+|+++ ..+.|++||++|.|+...+.
T Consensus 380 ~~g~~---~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i 440 (479)
T 3fmp_B 380 REGKE---KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAV 440 (479)
T ss_dssp ----------------------------------------------------------------
T ss_pred HcCCC---cEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEE
Confidence 87544 389999999999999999999999999865 69999999999999765543
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.94 E-value=7.2e-27 Score=274.82 Aligned_cols=308 Identities=16% Similarity=0.231 Sum_probs=208.5
Q ss_pred CCCchhHHHHHHHHHHhhcCC--CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcC--C
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--Q 358 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~--~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p--~ 358 (819)
.+|+++|.+++..+......+ .+.|+.++||+|||++++..+......+ ..++|++|+ .+..||.+++.++++ +
T Consensus 367 f~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g-~qvlvlaPtr~La~Q~~~~l~~~~~~~g 445 (780)
T 1gm5_A 367 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-FQTAFMVPTSILAIQHYRRTVESFSKFN 445 (780)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-SCEEEECSCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHHhhhcC
Confidence 469999999999987765554 4899999999999999877766654433 489999997 777899999999986 6
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH 438 (819)
+++..++|+.........++- ......+|+|+|++.+... +.-.++++|||||+|
T Consensus 446 i~v~~l~G~~~~~~r~~~~~~----------------------l~~g~~~IvVgT~~ll~~~---~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 446 IHVALLIGATTPSEKEKIKSG----------------------LRNGQIDVVIGTHALIQED---VHFKNLGLVIIDEQH 500 (780)
T ss_dssp CCEEECCSSSCHHHHHHHHHH----------------------HHSSCCCEEEECTTHHHHC---CCCSCCCEEEEESCC
T ss_pred ceEEEEeCCCCHHHHHHHHHH----------------------HhcCCCCEEEECHHHHhhh---hhccCCceEEecccc
Confidence 888889988655432222110 0124579999999988543 223467899999999
Q ss_pred cccCcccHHHHHHHhc-ccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHHH
Q 003450 439 RLKNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (819)
Q Consensus 439 ~~kn~~s~~~~~l~~l-~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~l 517 (819)
++.... ...+... ...+.++|||||+...+...+ |.+.
T Consensus 501 r~g~~q---r~~l~~~~~~~~vL~mSATp~p~tl~~~~--------------------~g~~------------------ 539 (780)
T 1gm5_A 501 RFGVKQ---REALMNKGKMVDTLVMSATPIPRSMALAF--------------------YGDL------------------ 539 (780)
T ss_dssp CC--------CCCCSSSSCCCEEEEESSCCCHHHHHHH--------------------TCCS------------------
T ss_pred hhhHHH---HHHHHHhCCCCCEEEEeCCCCHHHHHHHH--------------------hCCc------------------
Confidence 983211 1111111 346789999999643211100 0000
Q ss_pred HHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccCcH
Q 003450 518 RRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTN 597 (819)
Q Consensus 518 rr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~~ 597 (819)
...+...+|+....+...-
T Consensus 540 ---~~s~i~~~p~~r~~i~~~~---------------------------------------------------------- 558 (780)
T 1gm5_A 540 ---DVTVIDEMPPGRKEVQTML---------------------------------------------------------- 558 (780)
T ss_dssp ---SCEEECCCCSSCCCCEECC----------------------------------------------------------
T ss_pred ---ceeeeeccCCCCcceEEEE----------------------------------------------------------
Confidence 0001112222111000000
Q ss_pred HHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecch--------hHHHHHHHHHhh---CCCeEEEEeccCChHHHHHH
Q 003450 598 ESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQ--------HMLDLLEDYLTF---KKWQYERIDGKVGGAERQIR 666 (819)
Q Consensus 598 ~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~--------~~ld~L~~~L~~---~g~~~~~l~G~~~~~~R~~~ 666 (819)
....+...+.+.+......|++++|||+.. ..++.+.+.|.. .|+.+..++|+++.++|+++
T Consensus 559 -------~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v 631 (780)
T 1gm5_A 559 -------VPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRV 631 (780)
T ss_dssp -------CCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHH
T ss_pred -------eccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHH
Confidence 011122233344444445688899999754 346777788876 57889999999999999999
Q ss_pred HHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCC-CCcchHHHHhHhhhhcCCCCcEEE
Q 003450 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVMI 729 (819)
Q Consensus 667 i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~-wnp~~~~Qa~gR~~R~Gq~~~V~v 729 (819)
++.|+++... +||+|.++++|||++++++||++|++ ++...+.|++||++|.|+...+.+
T Consensus 632 ~~~F~~G~~~---ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~il 692 (780)
T 1gm5_A 632 MLEFAEGRYD---ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFL 692 (780)
T ss_dssp HHHHTTTSSS---BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEEC
T ss_pred HHHHHCCCCe---EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEE
Confidence 9999876543 79999999999999999999999998 478899999999999998765543
No 38
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.3e-24 Score=266.30 Aligned_cols=361 Identities=15% Similarity=0.150 Sum_probs=221.6
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEE
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~ 362 (819)
.+|+|+|.+++..+ ..++++|++++||+|||+++...+...... .+++||++|. .|..||.+++..++. .+.
T Consensus 183 f~ltp~Q~~AI~~i----~~g~dvLV~ApTGSGKTlva~l~i~~~l~~-g~rvlvl~PtraLa~Q~~~~l~~~~~--~Vg 255 (1108)
T 3l9o_A 183 FTLDPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLKN-KQRVIYTSPIKALSNQKYRELLAEFG--DVG 255 (1108)
T ss_dssp SCCCHHHHHHHHHH----TTTCCEEEECCSSSHHHHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHTS--SEE
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEcCcHHHHHHHHHHHHHHhC--Ccc
Confidence 57999999999876 778999999999999999987766655433 3589999997 788999999999885 566
Q ss_pred EEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccc--cCCccceEEEecccccc
Q 003450 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHRL 440 (819)
Q Consensus 363 ~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~--l~~~~~~~lIvDEaH~~ 440 (819)
+++|.... ....+|+|+|++.+...... ....++++|||||||++
T Consensus 256 lltGd~~~---------------------------------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l 302 (1108)
T 3l9o_A 256 LMTGDITI---------------------------------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYM 302 (1108)
T ss_dssp EECSSCBC---------------------------------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGT
T ss_pred EEeCcccc---------------------------------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhc
Confidence 67765431 13578999999988653211 11236789999999999
Q ss_pred cCcc--cHHHHHHHhcc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHHH
Q 003450 441 KNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (819)
Q Consensus 441 kn~~--s~~~~~l~~l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~l 517 (819)
.... ......+..+. ....++||||+ .|. .++...+..+....
T Consensus 303 ~d~~rg~~~e~ii~~l~~~~qvl~lSATi-pn~-~e~a~~l~~~~~~~-------------------------------- 348 (1108)
T 3l9o_A 303 RDKERGVVWEETIILLPDKVRYVFLSATI-PNA-MEFAEWICKIHSQP-------------------------------- 348 (1108)
T ss_dssp TSHHHHHHHHHHHHHSCTTSEEEEEECSC-SSC-HHHHHHHHHHTCSC--------------------------------
T ss_pred cccchHHHHHHHHHhcCCCceEEEEcCCC-CCH-HHHHHHHHhhcCCC--------------------------------
Confidence 6532 22333444444 45679999994 222 22222211110000
Q ss_pred HHhhhhhh-hcCCCceEEEEE----------e-cCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcc
Q 003450 518 RRVKKDVM-KELPPKKELILR----------V-ELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (819)
Q Consensus 518 rr~k~dv~-~~lp~~~~~~v~----------~-~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l 585 (819)
...+. ..-|......+. + .........|...... +...... .+..
T Consensus 349 ---~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~----l~~~~~~----------------~~~~ 405 (1108)
T 3l9o_A 349 ---CHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMAS----ISNQIGD----------------DPNS 405 (1108)
T ss_dssp ---EEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTT----C--------------------------
T ss_pred ---eEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHH----HHhhhcc----------------cccc
Confidence 00000 001111111110 1 1111111111111100 0000000 0000
Q ss_pred cCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhc-CceEEEEecchhHHHHHHHHHhhCCCe--------------
Q 003450 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQ-GHRVLIYSQFQHMLDLLEDYLTFKKWQ-------------- 650 (819)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~-g~kvlIFs~~~~~ld~L~~~L~~~g~~-------------- 650 (819)
..... . .................+.+++..+... +.++|||+......+.+...|...|+.
T Consensus 406 ~~~~~-~---~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~ 481 (1108)
T 3l9o_A 406 TDSRG-K---KGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNN 481 (1108)
T ss_dssp -----------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGG
T ss_pred ccccc-c---cccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 00000 0 0000000000000134455566555544 469999999999999999888654333
Q ss_pred -------------------------EEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCC
Q 003450 651 -------------------------YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD 705 (819)
Q Consensus 651 -------------------------~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~ 705 (819)
+..++|++++.+|..+++.|.++... +|++|.++++|||++++++||.++.+
T Consensus 482 ~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ik---VLVAT~vla~GIDiP~v~~VI~~~~~ 558 (1108)
T 3l9o_A 482 AIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSVRK 558 (1108)
T ss_dssp SCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCC---EEEEESCCCSCCCC--CEEEESCSEE
T ss_pred HHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCe---EEEECcHHhcCCCCCCceEEEecCcc
Confidence 78899999999999999999876544 89999999999999999999988887
Q ss_pred CCcch--------HHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 003450 706 WNPHA--------DLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (819)
Q Consensus 706 wnp~~--------~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~~ 748 (819)
|++.. |.|+.||++|.|+.....+|.++.....+..+..++..
T Consensus 559 ~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~ 609 (1108)
T 3l9o_A 559 WDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKG 609 (1108)
T ss_dssp ESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHC
T ss_pred cCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcC
Confidence 77665 99999999999999999999998887655555555543
No 39
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.92 E-value=4.4e-24 Score=259.40 Aligned_cols=391 Identities=15% Similarity=0.103 Sum_probs=229.1
Q ss_pred ccccccCCCCCCCCCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHH
Q 003450 270 EFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNW 348 (819)
Q Consensus 270 ~~~~~~~~p~~~~~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW 348 (819)
.|..+...+....+.+|+|+|.+++..+ ..++++++.++||+|||++++..+..+... .+.+||++|. .++.||
T Consensus 24 ~f~~l~~~~~~~~~f~l~~~Q~~aI~~i----l~g~~vlv~apTGsGKTlv~~~~i~~~~~~-g~~vlvl~PtraLa~Q~ 98 (997)
T 4a4z_A 24 NFDELIPNPARSWPFELDTFQKEAVYHL----EQGDSVFVAAHTSAGKTVVAEYAIAMAHRN-MTKTIYTSPIKALSNQK 98 (997)
T ss_dssp THHHHCSSCSCCCSSCCCHHHHHHHHHH----HTTCEEEEECCTTSCSHHHHHHHHHHHHHT-TCEEEEEESCGGGHHHH
T ss_pred chhhhhHhHHHhCCCCCCHHHHHHHHHH----HcCCCEEEEECCCCcHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHH
Confidence 3443333333334568999999999876 567899999999999998766665555433 2479999995 788999
Q ss_pred HHHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCC
Q 003450 349 EREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKP 426 (819)
Q Consensus 349 ~~e~~~~~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~ 426 (819)
.+++..++++.++..++|.... ....+|+|+|++.+.... .....
T Consensus 99 ~~~l~~~~~~~~v~~l~G~~~~---------------------------------~~~~~IlV~Tpe~L~~~l~~~~~~l 145 (997)
T 4a4z_A 99 FRDFKETFDDVNIGLITGDVQI---------------------------------NPDANCLIMTTEILRSMLYRGADLI 145 (997)
T ss_dssp HHHHHTTC--CCEEEECSSCEE---------------------------------CTTSSEEEEEHHHHHHHHHHTCSGG
T ss_pred HHHHHHHcCCCeEEEEeCCCcc---------------------------------CCCCCEEEECHHHHHHHHHhCchhh
Confidence 9999999888899988886431 134689999999886432 12222
Q ss_pred ccceEEEecccccccCc--ccHHHHHHHhccc-CcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHH
Q 003450 427 IKWQCMIVDEGHRLKNK--DSKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEE 503 (819)
Q Consensus 427 ~~~~~lIvDEaH~~kn~--~s~~~~~l~~l~~-~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~ 503 (819)
.++++|||||||++.+. .......+..+.. ...++|||||- +..+|.+++..
T Consensus 146 ~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~--------------------n~~ef~~~l~~----- 200 (997)
T 4a4z_A 146 RDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVP--------------------NTYEFANWIGR----- 200 (997)
T ss_dssp GGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCT--------------------THHHHHHHHHH-----
T ss_pred cCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEcCCCC--------------------ChHHHHHHHhc-----
Confidence 46889999999998653 3344455555543 56799999972 22223332210
Q ss_pred HHHHHHHHHhhHHHHHhhhhh----hhcCCCceEEEEE--------ec-CCHHHHHHHHHHHHHHHHHHH----------
Q 003450 504 QISRLHRMLAPHLLRRVKKDV----MKELPPKKELILR--------VE-LSSKQKEYYKAILTRNYQILT---------- 560 (819)
Q Consensus 504 ~~~~l~~~l~~~~lrr~k~dv----~~~lp~~~~~~v~--------~~-ls~~q~~~y~~i~~~~~~~l~---------- 560 (819)
.....+ ...-|...++.+. +. ........|............
T Consensus 201 ---------------~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 265 (997)
T 4a4z_A 201 ---------------TKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNG 265 (997)
T ss_dssp ---------------HHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--------------
T ss_pred ---------------ccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccc
Confidence 000000 0011111111111 11 000011111111100000000
Q ss_pred hcCC-CcchHHHHHHHHH-------HhcCCCcccCCCCCCccCcH-HHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEe
Q 003450 561 RRGG-AQISLINVVMELR-------KLCCHPYMLEGVEPDIEDTN-ESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYS 631 (819)
Q Consensus 561 ~~~~-~~~~~~~~~~~lr-------~~~~hp~l~~~~~~~~~~~~-~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs 631 (819)
+... ..........+.. +--..+.............. ...........++..+.+.+.. ....++|||+
T Consensus 266 ~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~--~~~~~~IVF~ 343 (997)
T 4a4z_A 266 RGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRK--RELLPMVVFV 343 (997)
T ss_dssp ---------------------------------------------------CCCCTTHHHHHHHHHHH--TTCCSEEEEC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHh--CCCCCEEEEE
Confidence 0000 0000000000000 00000000000000000000 0000001123345555555543 2357999999
Q ss_pred cchhHHHHHHHHHhhCCC---------------------------------------eEEEEeccCChHHHHHHHHHhcC
Q 003450 632 QFQHMLDLLEDYLTFKKW---------------------------------------QYERIDGKVGGAERQIRIDRFNA 672 (819)
Q Consensus 632 ~~~~~ld~L~~~L~~~g~---------------------------------------~~~~l~G~~~~~~R~~~i~~F~~ 672 (819)
......+.+...|...|+ .+..++|+++..+|+.+++.|.+
T Consensus 344 ~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~ 423 (997)
T 4a4z_A 344 FSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSK 423 (997)
T ss_dssp SCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHC
Confidence 999999999999977665 47899999999999999999987
Q ss_pred CCCCcEEEEeccccccccCCcccCCEEEEeCCCC---------CcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHH
Q 003450 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW---------NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMM 743 (819)
Q Consensus 673 ~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~w---------np~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~ 743 (819)
+..+ +|++|.++++|||+++ .+||+++.+. ++..+.|+.||++|.|+.....+|.+...+..++.++
T Consensus 424 G~~k---VLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~ 499 (997)
T 4a4z_A 424 GFIK---VLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATF 499 (997)
T ss_dssp TCCS---EEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHH
T ss_pred CCCc---EEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHH
Confidence 6544 8999999999999999 7777766554 8999999999999999998888888886655555554
Q ss_pred H
Q 003450 744 Q 744 (819)
Q Consensus 744 ~ 744 (819)
.
T Consensus 500 ~ 500 (997)
T 4a4z_A 500 K 500 (997)
T ss_dssp H
T ss_pred H
Confidence 4
No 40
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.91 E-value=1.7e-23 Score=249.65 Aligned_cols=327 Identities=16% Similarity=0.157 Sum_probs=209.6
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcC-CCeEE
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMNVV 362 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p-~~~v~ 362 (819)
+|+|+|.+++..+ +..++++|++++||+|||+++..++........+++++++|. .+..||.+++.++.+ +.++.
T Consensus 30 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~ 106 (715)
T 2va8_A 30 KLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVA 106 (715)
T ss_dssp BCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEE
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEE
Confidence 6999999998752 356899999999999999998665554332223599999997 588999999966553 67777
Q ss_pred EEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccc--cCCccceEEEecccccc
Q 003450 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHRL 440 (819)
Q Consensus 363 ~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~--l~~~~~~~lIvDEaH~~ 440 (819)
.++|...... ......+|+|+|++.+...... ...-++++|||||+|.+
T Consensus 107 ~~~G~~~~~~-----------------------------~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 157 (715)
T 2va8_A 107 MTSGDYDTDD-----------------------------AWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYL 157 (715)
T ss_dssp ECCSCSSSCC-----------------------------GGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGG
T ss_pred EEeCCCCCch-----------------------------hhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhc
Confidence 7777532210 0113678999999987642211 11236789999999998
Q ss_pred cCc--ccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHHHH
Q 003450 441 KNK--DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLR 518 (819)
Q Consensus 441 kn~--~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~lr 518 (819)
.+. ...+...+..+...+.++||||+- +..++...+. ...+.
T Consensus 158 ~~~~~~~~l~~i~~~~~~~~ii~lSATl~--n~~~~~~~l~---~~~~~------------------------------- 201 (715)
T 2va8_A 158 NDPERGPVVESVTIRAKRRNLLALSATIS--NYKQIAKWLG---AEPVA------------------------------- 201 (715)
T ss_dssp GCTTTHHHHHHHHHHHHTSEEEEEESCCT--THHHHHHHHT---CEEEE-------------------------------
T ss_pred CCcccchHHHHHHHhcccCcEEEEcCCCC--CHHHHHHHhC---CCccC-------------------------------
Confidence 642 223333444555678899999983 2333322221 10000
Q ss_pred HhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccCcHH
Q 003450 519 RVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNE 598 (819)
Q Consensus 519 r~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~~~ 598 (819)
.. ....| ....+....... . .....+.......
T Consensus 202 ---~~-~r~~~-l~~~~~~~~~~~----------------------~---------------~~~~~~~~~~~~~----- 234 (715)
T 2va8_A 202 ---TN-WRPVP-LIEGVIYPERKK----------------------K---------------EYNVIFKDNTTKK----- 234 (715)
T ss_dssp ---CC-CCSSC-EEEEEEEECSST----------------------T---------------EEEEEETTSCEEE-----
T ss_pred ---CC-CCCCC-ceEEEEecCCcc----------------------c---------------ceeeecCcchhhh-----
Confidence 00 00011 111111100000 0 0000000000000
Q ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCC------------------------------
Q 003450 599 SFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKK------------------------------ 648 (819)
Q Consensus 599 ~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g------------------------------ 648 (819)
+.....+... +..+...++++|||++.....+.+...|....
T Consensus 235 ----~~~~~~~~~~----~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 306 (715)
T 2va8_A 235 ----VHGDDAIIAY----TLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKEL 306 (715)
T ss_dssp ----EESSSHHHHH----HHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHH
T ss_pred ----cccchHHHHH----HHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHH
Confidence 0001222333 33333568899999999999888888886531
Q ss_pred ------CeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEE----eC-------CCCCcchH
Q 003450 649 ------WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YD-------SDWNPHAD 711 (819)
Q Consensus 649 ------~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~----~d-------~~wnp~~~ 711 (819)
..+..++|+++.++|..+.+.|.++.- .+|++|.++++|||++++++||. || .++++..+
T Consensus 307 l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~---~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~ 383 (715)
T 2va8_A 307 LKSLISKGVAYHHAGLSKALRDLIEEGFRQRKI---KVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEY 383 (715)
T ss_dssp HHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCS---CEEEECGGGGGSSCCCBSEEEECCC--------------CHHHH
T ss_pred HHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCC---eEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHH
Confidence 248899999999999999999987543 38999999999999999999998 99 79999999
Q ss_pred HHHhHhhhhcCCCCcEEEEEEEeCCC
Q 003450 712 LQAMARAHRLGQTNKVMIFRLITRGS 737 (819)
Q Consensus 712 ~Qa~gR~~R~Gq~~~V~v~~li~~~T 737 (819)
.|+.||++|.|+.+.-.+|.+++...
T Consensus 384 ~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 384 KQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHHhhhcCCCCCCCCceEEEEeCCch
Confidence 99999999999988888999987765
No 41
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.91 E-value=2.1e-24 Score=256.58 Aligned_cols=320 Identities=17% Similarity=0.173 Sum_probs=212.8
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcC-CCeEE
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMNVV 362 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p-~~~v~ 362 (819)
+|+|+|.+++..+ ..+++++++++||+|||+++...+...... .+++++++|. .+..||.+++.++.+ +.++.
T Consensus 25 ~l~~~Q~~~i~~i----~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~ 99 (702)
T 2p6r_A 25 ELFPPQAEAVEKV----FSGKNLLLAMPTAAGKTLLAEMAMVREAIK-GGKSLYVVPLRALAGEKYESFKKWEKIGLRIG 99 (702)
T ss_dssp CCCCCCHHHHHHH----TTCSCEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEE
T ss_pred CCCHHHHHHHHHH----hCCCcEEEEcCCccHHHHHHHHHHHHHHHh-CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEE
Confidence 6999999999875 568999999999999999986555443332 3589999997 588999999976654 67888
Q ss_pred EEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhccccc--CCccceEEEecccccc
Q 003450 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASL--KPIKWQCMIVDEGHRL 440 (819)
Q Consensus 363 ~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l--~~~~~~~lIvDEaH~~ 440 (819)
.++|...... ......+|+|+|++.+......- ..-++++||+||+|.+
T Consensus 100 ~~~G~~~~~~-----------------------------~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l 150 (702)
T 2p6r_A 100 ISTGDYESRD-----------------------------EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLL 150 (702)
T ss_dssp EECSSCBCCS-----------------------------SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGG
T ss_pred EEeCCCCcch-----------------------------hhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeec
Confidence 8887643210 01236789999999886432211 1236789999999998
Q ss_pred cCc--ccHHHHHHHhc----ccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhh
Q 003450 441 KNK--DSKLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (819)
Q Consensus 441 kn~--~s~~~~~l~~l----~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~ 514 (819)
... .......+..+ ...+.++||||+- +..++...+. ...+
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~--n~~~~~~~l~---~~~~---------------------------- 197 (702)
T 2p6r_A 151 DSEKRGATLEILVTKMRRMNKALRVIGLSATAP--NVTEIAEWLD---ADYY---------------------------- 197 (702)
T ss_dssp GCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCT--THHHHHHHTT---CEEE----------------------------
T ss_pred CCCCcccHHHHHHHHHHhcCcCceEEEECCCcC--CHHHHHHHhC---CCcc----------------------------
Confidence 652 22222333333 3457899999972 2333332211 1000
Q ss_pred HHHHHhhhhhhhcC-CCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCc
Q 003450 515 HLLRRVKKDVMKEL-PPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (819)
Q Consensus 515 ~~lrr~k~dv~~~l-p~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~ 593 (819)
.... |-.....+...- . ....+.....
T Consensus 198 ----------~~~~r~~~l~~~~~~~~-------------------------~----------------~~~~~~~~~~- 225 (702)
T 2p6r_A 198 ----------VSDWRPVPLVEGVLCEG-------------------------T----------------LELFDGAFST- 225 (702)
T ss_dssp ----------ECCCCSSCEEEEEECSS-------------------------E----------------EEEEETTEEE-
T ss_pred ----------cCCCCCccceEEEeeCC-------------------------e----------------eeccCcchhh-
Confidence 0000 101111100000 0 0000000000
Q ss_pred cCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhC--------------------------
Q 003450 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-------------------------- 647 (819)
Q Consensus 594 ~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~-------------------------- 647 (819)
...-.+...+. .....++++|||++.+...+.+...|...
T Consensus 226 ----------~~~~~~~~~~~----~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 291 (702)
T 2p6r_A 226 ----------SRRVKFEELVE----ECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKL 291 (702)
T ss_dssp ----------EEECCHHHHHH----HHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHH
T ss_pred ----------hhhhhHHHHHH----HHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHH
Confidence 00001333333 33456889999999998888777777532
Q ss_pred ----CCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEE----eC---CCCCcchHHHHhH
Q 003450 648 ----KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YD---SDWNPHADLQAMA 716 (819)
Q Consensus 648 ----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~----~d---~~wnp~~~~Qa~g 716 (819)
+..+..++|+++.++|+.+.+.|.++.. .+|++|.++++|||++++++||. || .++++..+.|+.|
T Consensus 292 ~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~---~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~G 368 (702)
T 2p6r_A 292 AECVRKGAAFHHAGLLNGQRRVVEDAFRRGNI---KVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAG 368 (702)
T ss_dssp HHHHHTTCCEECTTSCHHHHHHHHHHHHTTSC---CEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHT
T ss_pred HHHHhcCeEEecCCCCHHHHHHHHHHHHCCCC---eEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhh
Confidence 2346779999999999999999987543 38999999999999999999998 77 6899999999999
Q ss_pred hhhhcCCCCcEEEEEEEeCCCHHH
Q 003450 717 RAHRLGQTNKVMIFRLITRGSIEE 740 (819)
Q Consensus 717 R~~R~Gq~~~V~v~~li~~~TvEe 740 (819)
|++|.|+.+.-.+|.+++....+.
T Consensus 369 RaGR~g~~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 369 RAGRPGMDERGEAIIIVGKRDREI 392 (702)
T ss_dssp TBSCTTTCSCEEEEEECCGGGHHH
T ss_pred hcCCCCCCCCceEEEEecCccHHH
Confidence 999999998889999998876543
No 42
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.91 E-value=2.3e-24 Score=257.05 Aligned_cols=319 Identities=17% Similarity=0.123 Sum_probs=214.6
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHH-HHHHhcCCCCceEEEecC-cchHHHHHHHHHHcC-CCeE
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMNV 361 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~-l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p-~~~v 361 (819)
+|+|+|.+++..+ +..+++++++++||+|||+++... +..+... .+++++++|. .++.||.+++.++.+ +.++
T Consensus 23 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v 98 (720)
T 2zj8_A 23 SFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ-GGKAVYIVPLKALAEEKFQEFQDWEKIGLRV 98 (720)
T ss_dssp BCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-CSEEEEECSSGGGHHHHHHHTGGGGGGTCCE
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEE
Confidence 6999999998751 256899999999999999998444 4444322 3589999996 888999999976654 6788
Q ss_pred EEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccc--cCCccceEEEeccccc
Q 003450 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHR 439 (819)
Q Consensus 362 ~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~--l~~~~~~~lIvDEaH~ 439 (819)
..++|...... ......+|+|+|++.+...... ...-++++|||||+|.
T Consensus 99 ~~~~G~~~~~~-----------------------------~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~ 149 (720)
T 2zj8_A 99 AMATGDYDSKD-----------------------------EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHL 149 (720)
T ss_dssp EEECSCSSCCC-----------------------------GGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGG
T ss_pred EEecCCCCccc-----------------------------cccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcc
Confidence 88888532210 0113678999999988542211 1123678999999999
Q ss_pred ccCc--ccHHHHHHHhcc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHH
Q 003450 440 LKNK--DSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (819)
Q Consensus 440 ~kn~--~s~~~~~l~~l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~ 516 (819)
+... ...+...+..++ ..++++||||+- +..++...+. ...
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~--n~~~~~~~l~---~~~------------------------------- 193 (720)
T 2zj8_A 150 IGSRDRGATLEVILAHMLGKAQIIGLSATIG--NPEELAEWLN---AEL------------------------------- 193 (720)
T ss_dssp GGCTTTHHHHHHHHHHHBTTBEEEEEECCCS--CHHHHHHHTT---EEE-------------------------------
T ss_pred cCCCcccHHHHHHHHHhhcCCeEEEEcCCcC--CHHHHHHHhC---Ccc-------------------------------
Confidence 8642 233333444444 467899999972 2233222211 000
Q ss_pred HHHhhhhhhhcC-CCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccC
Q 003450 517 LRRVKKDVMKEL-PPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (819)
Q Consensus 517 lrr~k~dv~~~l-p~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~ 595 (819)
+.... |-.....+.... . ........
T Consensus 194 -------~~~~~rp~~l~~~~~~~~-------------------------~----------------~~~~~~~~----- 220 (720)
T 2zj8_A 194 -------IVSDWRPVKLRRGVFYQG-------------------------F----------------VTWEDGSI----- 220 (720)
T ss_dssp -------EECCCCSSEEEEEEEETT-------------------------E----------------EEETTSCE-----
T ss_pred -------cCCCCCCCcceEEEEeCC-------------------------e----------------eeccccch-----
Confidence 00011 111111111000 0 00000000
Q ss_pred cHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhC------------------C---------
Q 003450 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK------------------K--------- 648 (819)
Q Consensus 596 ~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~------------------g--------- 648 (819)
-....+...+.++ ...++++|||++.+...+.+...|... +
T Consensus 221 --------~~~~~~~~~~~~~----~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 288 (720)
T 2zj8_A 221 --------DRFSSWEELVYDA----IRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEK 288 (720)
T ss_dssp --------EECSSTTHHHHHH----HHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHH
T ss_pred --------hhhhHHHHHHHHH----HhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHH
Confidence 0012233334333 346889999999999888877777532 1
Q ss_pred ------CeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEE----eC----CCCCcchHHHH
Q 003450 649 ------WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YD----SDWNPHADLQA 714 (819)
Q Consensus 649 ------~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~----~d----~~wnp~~~~Qa 714 (819)
..+..++|+++.++|+.+.+.|.++.- .+|++|.++++|||+++.++||. || .++++..+.|+
T Consensus 289 l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~---~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr 365 (720)
T 2zj8_A 289 LAKAIRGGVAFHHAGLGRDERVLVEENFRKGII---KAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQM 365 (720)
T ss_dssp HHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSS---CEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHH
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCC---eEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHH
Confidence 248899999999999999999987543 38999999999999999999998 77 68999999999
Q ss_pred hHhhhhcCCCCcEEEEEEEeCCCHHH
Q 003450 715 MARAHRLGQTNKVMIFRLITRGSIEE 740 (819)
Q Consensus 715 ~gR~~R~Gq~~~V~v~~li~~~TvEe 740 (819)
.||++|.|+.+.-.+|.+++....+.
T Consensus 366 ~GRaGR~g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 366 LGRAGRPKYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp HTTBCCTTTCSEEEEEEECSSSCHHH
T ss_pred HhhcCCCCCCCCceEEEEecCccHHH
Confidence 99999999988889999999887554
No 43
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.91 E-value=2.7e-23 Score=254.51 Aligned_cols=274 Identities=14% Similarity=0.184 Sum_probs=189.2
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHc-CCCeE
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA-PQMNV 361 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~-p~~~v 361 (819)
.+|+|+|.+++..+ ..++++|+.++||+|||..++..+..... ....+|||+|. .|+.|+.+.+..+. .++++
T Consensus 77 f~pt~iQ~~ai~~i----l~g~dvlv~ApTGSGKTl~~l~~il~~~~-~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v 151 (1104)
T 4ddu_A 77 KDLTGYQRLWAKRI----VQGKSFTMVAPTGVGKTTFGMMTALWLAR-KGKKSALVFPTVTLVKQTLERLQKLADEKVKI 151 (1104)
T ss_dssp SCCCHHHHHHHHHH----TTTCCEEECCSTTCCHHHHHHHHHHHHHT-TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCE
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEeCCCCcHHHHHHHHHHHHHh-cCCeEEEEechHHHHHHHHHHHHHhhCCCCeE
Confidence 35889999999876 56789999999999999977666665553 33589999996 78899999999976 46799
Q ss_pred EEEecChhH---HHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccc
Q 003450 362 VMYVGTSQA---RNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (819)
Q Consensus 362 ~~~~g~~~~---r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH 438 (819)
..++|.... ....... ....++|+|+|++.+......+...++++|||||||
T Consensus 152 ~~l~Gg~~~~er~~~~~~l-------------------------~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH 206 (1104)
T 4ddu_A 152 FGFYSSMKKEEKEKFEKSF-------------------------EEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVD 206 (1104)
T ss_dssp EEECTTCCTTHHHHHHHHH-------------------------HTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHH
T ss_pred EEEeCCCCHHHHHHHHHHH-------------------------hCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCC
Confidence 999987655 2222221 113579999999999765444555578999999999
Q ss_pred cccCcc-------------cH-HHHHHHhc------------ccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHH
Q 003450 439 RLKNKD-------------SK-LFSSLKQY------------STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEF 492 (819)
Q Consensus 439 ~~kn~~-------------s~-~~~~l~~l------------~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f 492 (819)
.+...+ .. +...+..+ .....+++||||....+.+.+
T Consensus 207 ~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~----------------- 269 (1104)
T 4ddu_A 207 AVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------- 269 (1104)
T ss_dssp HHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHH-----------------
T ss_pred ccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHH-----------------
Confidence 864311 12 22333333 234679999997555432111
Q ss_pred HHHHhccchHHHHHHHHHHHhhHHHHHhhhhhhh-cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHH
Q 003450 493 QEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLIN 571 (819)
Q Consensus 493 ~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~dv~~-~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~ 571 (819)
...+ +. -.+.. ..+........+
T Consensus 270 ~~~~---------------l~--------i~v~~~~~~~~~i~~~~~--------------------------------- 293 (1104)
T 4ddu_A 270 FRDL---------------LN--------FTVGRLVSVARNITHVRI--------------------------------- 293 (1104)
T ss_dssp HHHH---------------TC--------CCCCBCCCCCCCEEEEEE---------------------------------
T ss_pred hhcc---------------ee--------EEeccCCCCcCCceeEEE---------------------------------
Confidence 0000 00 00000 000000000000
Q ss_pred HHHHHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeE
Q 003450 572 VVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQY 651 (819)
Q Consensus 572 ~~~~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~ 651 (819)
...|...|.+++.. .+.++|||++.....+.|...|...|+++
T Consensus 294 ----------------------------------~~~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~~ 336 (1104)
T 4ddu_A 294 ----------------------------------SSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNV 336 (1104)
T ss_dssp ----------------------------------SCCCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTCCE
T ss_pred ----------------------------------ecCHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCCCe
Confidence 11344555556655 36899999999999999999999999999
Q ss_pred E-EEeccCChHHHHHHHHHhcCCCCCcEEEEec----cccccccCCccc-CCEEEEeCCCC
Q 003450 652 E-RIDGKVGGAERQIRIDRFNAKNSSRFCFLLS----TRAGGLGINLAT-ADTVIIYDSDW 706 (819)
Q Consensus 652 ~-~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~s----t~a~~~GinL~~-a~~VI~~d~~w 706 (819)
. .++|. |++ ++.|+++... +|++ |+++++|||+++ +++||+||+|-
T Consensus 337 ~~~lhg~-----rr~-l~~F~~G~~~---VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 337 GETWSEF-----EKN-FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp EESSSSH-----HHH-HHHHHHTSCS---EEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred eeEecCc-----HHH-HHHHHCCCCC---EEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 8 88882 555 9999886654 7888 999999999999 99999999997
No 44
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.89 E-value=1.3e-22 Score=244.83 Aligned_cols=340 Identities=14% Similarity=0.156 Sum_probs=202.6
Q ss_pred CCCchhHHHHHHHHHHhhc----------CCCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEec-CcchHHHHHH
Q 003450 284 GSLHPYQLEGLNFLRFSWS----------KQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWERE 351 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~----------~~~~~iLade~GlGKT~~~i~~l~~l~~~~-~~~~LIv~P-~~ll~qW~~e 351 (819)
..|||||.+|+..+..... .++++++.++||+|||++++.++..+...+ ..++||||| ..|..||.++
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 3599999999999876433 246899999999999999977664443322 348999999 5888999999
Q ss_pred HHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccc---c-CCc
Q 003450 352 FATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS---L-KPI 427 (819)
Q Consensus 352 ~~~~~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~---l-~~~ 427 (819)
|..|.+.. ..|........... .....+|+|+|++.+...... + ..-
T Consensus 350 f~~f~~~~----v~~~~s~~~l~~~L-------------------------~~~~~~IiVtTiqkl~~~l~~~~~~~~~~ 400 (1038)
T 2w00_A 350 YQRFSPDS----VNGSENTAGLKRNL-------------------------DKDDNKIIVTTIQKLNNLMKAESDLPVYN 400 (1038)
T ss_dssp HHTTSTTC----SSSSCCCHHHHHHH-------------------------HCSSCCEEEEEHHHHHHHHHHCCCCGGGG
T ss_pred HHHhcccc----cccccCHHHHHHHh-------------------------cCCCCCEEEEEHHHHHHHHhcccchhccc
Confidence 99988641 11221111111111 013578999999999753211 1 112
Q ss_pred cceEEEecccccccCcccHHHHHH-HhcccCcEEEEeCCCCCCC-------hhHHHhhhcccCCCCCCChHHHHHHHhcc
Q 003450 428 KWQCMIVDEGHRLKNKDSKLFSSL-KQYSTRHRVLLTGTPLQNN-------LDELFMLMHFLDAGKFGSLEEFQEEFKDI 499 (819)
Q Consensus 428 ~~~~lIvDEaH~~kn~~s~~~~~l-~~l~~~~~llLTgTP~~n~-------~~el~~ll~~l~~~~~~~~~~f~~~~~~~ 499 (819)
.+.+||+||||++.. ...++.+ ..++...+++|||||.... ..++|.-. ....
T Consensus 401 ~~~lvIiDEAHrs~~--~~~~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~-----------------i~~Y 461 (1038)
T 2w00_A 401 QQVVFIFDECHRSQF--GEAQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRE-----------------LHSY 461 (1038)
T ss_dssp SCEEEEEESCCTTHH--HHHHHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSE-----------------EEEE
T ss_pred cccEEEEEccchhcc--hHHHHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCe-----------------eEee
Confidence 678999999999753 2233344 4456678999999997542 11222100 0000
Q ss_pred chHHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHh
Q 003450 500 NQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKL 579 (819)
Q Consensus 500 ~~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~ 579 (819)
. +...+. + ..+.|.. +.+....+. +.... ..... . .....
T Consensus 462 ~-------l~~AI~---------d--g~l~p~~--v~y~~v~~~----~~~~~---------~e~d~----~---~~~~i 501 (1038)
T 2w00_A 462 V-------ITDAIR---------D--EKVLKFK--VDYNDVRPQ----FKSLE---------TETDE----K---KLSAA 501 (1038)
T ss_dssp C-------HHHHHH---------H--TSSCCEE--EEECCCCGG----GHHHH---------TCCCH----H---HHHHT
T ss_pred c-------HHHHHh---------C--CCcCCeE--EEEEeccch----hhhcc---------ccccH----H---HHHHH
Confidence 0 001110 0 0111211 112221110 00000 00000 0 00000
Q ss_pred cCCCcccCCCCCCccCcHHHHHHhhhcCchHHHH-HHHHHHHHh---------cCceEEEEecchhHHHHHHHHHhhCC-
Q 003450 580 CCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLL-DKMMVKLKE---------QGHRVLIYSQFQHMLDLLEDYLTFKK- 648 (819)
Q Consensus 580 ~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l-~~ll~~l~~---------~g~kvlIFs~~~~~ld~L~~~L~~~g- 648 (819)
..-. .+....++..+ ..++..+.. .|.+++|||..+..+..+.+.|...+
T Consensus 502 -~~~~------------------~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~ 562 (1038)
T 2w00_A 502 -ENQQ------------------AFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQE 562 (1038)
T ss_dssp -CSTT------------------TTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred -HHHH------------------HhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhh
Confidence 0000 00111223333 234443332 35689999999999998888886543
Q ss_pred -----------CeE-EEEecc----------C----------Ch-----------------------------HHHHHHH
Q 003450 649 -----------WQY-ERIDGK----------V----------GG-----------------------------AERQIRI 667 (819)
Q Consensus 649 -----------~~~-~~l~G~----------~----------~~-----------------------------~~R~~~i 667 (819)
+++ ..++|+ + +. ..|..++
T Consensus 563 ~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~ 642 (1038)
T 2w00_A 563 EAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLA 642 (1038)
T ss_dssp HHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHH
T ss_pred hhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHH
Confidence 455 345542 1 11 1478889
Q ss_pred HHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCC-C-cEEEEEEEe
Q 003450 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT-N-KVMIFRLIT 734 (819)
Q Consensus 668 ~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~-~-~V~v~~li~ 734 (819)
++|.++.- .+||+++...+|+|.+.+ +++++|.|.+...++||+||+.|.+.. | ...|+.|+.
T Consensus 643 ~~Fk~g~i---~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 643 QRVKNQDI---DLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHTTSS---SEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HHHHcCCC---eEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 99987543 389999999999999999 678899999999999999999999874 4 466776663
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.87 E-value=1.1e-21 Score=240.73 Aligned_cols=273 Identities=13% Similarity=0.152 Sum_probs=177.3
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCC--C
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ--M 359 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~--~ 359 (819)
|..+ |+|.+++..+ ..++++|+.++||+|||+.++.++..+... ..++|||+|+ .|..|+.+.+.++++. +
T Consensus 55 g~~p-~iQ~~ai~~i----l~g~dvlv~apTGSGKTl~~lp~l~~~~~~-~~~~lil~PtreLa~Q~~~~l~~l~~~~~i 128 (1054)
T 1gku_B 55 GEPR-AIQKMWAKRI----LRKESFAATAPTGVGKTSFGLAMSLFLALK-GKRCYVIFPTSLLVIQAAETIRKYAEKAGV 128 (1054)
T ss_dssp CSCC-HHHHHHHHHH----HTTCCEECCCCBTSCSHHHHHHHHHHHHTT-SCCEEEEESCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCH-HHHHHHHHHH----HhCCCEEEEcCCCCCHHHHHHHHHHHHhhc-CCeEEEEeccHHHHHHHHHHHHHHHhhcCC
Confidence 3457 9999999876 467899999999999998666666555443 3589999997 7788999999988864 4
Q ss_pred ----eEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEec
Q 003450 360 ----NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (819)
Q Consensus 360 ----~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvD 435 (819)
.+..++|+........... ....++|+|+|++.+......+. .+++||||
T Consensus 129 ~~~~~v~~~~Gg~~~~~~~~~~~------------------------~l~~~~IlV~TP~~L~~~l~~L~--~l~~lViD 182 (1054)
T 1gku_B 129 GTENLIGYYHGRIPKREKENFMQ------------------------NLRNFKIVITTTQFLSKHYRELG--HFDFIFVD 182 (1054)
T ss_dssp SGGGSEEECCSSCCSHHHHHHHH------------------------SGGGCSEEEEEHHHHHHCSTTSC--CCSEEEES
T ss_pred CccceEEEEeCCCChhhHHHHHh------------------------hccCCCEEEEcHHHHHHHHHHhc--cCCEEEEe
Confidence 6788888765443211111 01127899999999987655544 67899999
Q ss_pred ccccccCcccHHHHHHHhcc------------cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHH
Q 003450 436 EGHRLKNKDSKLFSSLKQYS------------TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEE 503 (819)
Q Consensus 436 EaH~~kn~~s~~~~~l~~l~------------~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~ 503 (819)
|||++.+........+..+. ....+++|||+... .++. ..+...+..
T Consensus 183 Eah~~l~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~--~~~~--------------~~~~~~~~~----- 241 (1054)
T 1gku_B 183 DVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK--KGKK--------------AELFRQLLN----- 241 (1054)
T ss_dssp CHHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC--CCTT--------------HHHHHHHHC-----
T ss_pred ChhhhhhccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc--hhHH--------------HHHhhcceE-----
Confidence 99998764444444443331 23468899986432 1000 000000000
Q ss_pred HHHHHHHHHhhHHHHHhhhhhh-hcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCC
Q 003450 504 QISRLHRMLAPHLLRRVKKDVM-KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCH 582 (819)
Q Consensus 504 ~~~~l~~~l~~~~lrr~k~dv~-~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~h 582 (819)
-.+. ...+........+
T Consensus 242 ------------------i~v~~~~~~~~~i~~~~~-------------------------------------------- 259 (1054)
T 1gku_B 242 ------------------FDIGSSRITVRNVEDVAV-------------------------------------------- 259 (1054)
T ss_dssp ------------------CCCSCCEECCCCEEEEEE--------------------------------------------
T ss_pred ------------------EEccCcccCcCCceEEEe--------------------------------------------
Confidence 0000 0000000000000
Q ss_pred CcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHH
Q 003450 583 PYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAE 662 (819)
Q Consensus 583 p~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~ 662 (819)
...|...|.+++.. .+.++||||+....++.|.+.|... +++..++|++
T Consensus 260 -----------------------~~~k~~~L~~ll~~---~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~---- 308 (1054)
T 1gku_B 260 -----------------------NDESISTLSSILEK---LGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK---- 308 (1054)
T ss_dssp -----------------------SCCCTTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS----
T ss_pred -----------------------chhHHHHHHHHHhh---cCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH----
Confidence 12233334444433 2678999999999999999999988 9999999987
Q ss_pred HHHHHHHhcCCCCCcEEEEec----cccccccCCcccC-CEEEEeCCC
Q 003450 663 RQIRIDRFNAKNSSRFCFLLS----TRAGGLGINLATA-DTVIIYDSD 705 (819)
Q Consensus 663 R~~~i~~F~~~~~~~~v~L~s----t~a~~~GinL~~a-~~VI~~d~~ 705 (819)
.+++++|+++... +||+ |+++++|||++++ ++||++|.|
T Consensus 309 -~~~l~~F~~G~~~---VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 309 -KGDYEKFVEGEID---HLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp -SHHHHHHHHTSCS---EEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred -HHHHHHHHcCCCc---EEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 4778999876544 6777 8999999999995 999999999
No 46
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.84 E-value=2.6e-20 Score=214.67 Aligned_cols=117 Identities=18% Similarity=0.174 Sum_probs=100.8
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
...|...|.+++......|.++||||......+.|...|...|+++..++|.....+|..+...|+. + .++|+|+
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~---g--~VlIATd 488 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK---G--AVTIATN 488 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST---T--CEEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC---C--eEEEeCC
Confidence 3468888888888776778999999999999999999999999999999999877776544444432 2 2799999
Q ss_pred cccccCCcc--------cCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcE
Q 003450 686 AGGLGINLA--------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (819)
Q Consensus 686 a~~~GinL~--------~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V 727 (819)
.+|+|+|++ +..+||.+|.|-++..|.|++||++|.|.....
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 999999999 778999999999999999999999999986544
No 47
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=99.84 E-value=1.4e-22 Score=191.95 Aligned_cols=139 Identities=23% Similarity=0.408 Sum_probs=97.1
Q ss_pred CCcccccccccccccCcCCC---CCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhhh
Q 003450 98 PLNDIDKILDCEMRPTVAGD---SDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQM 174 (819)
Q Consensus 98 ~~~~~~~il~~r~~p~~~~~---~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~~ 174 (819)
..+.|++|++.|........ .+............||||||+|+||+||+|+|+++|.. .|++ +++.+|.++.
T Consensus 11 ~~~~id~v~~hr~~~~~~~~~~~~~~~~~~~~~~~~~EYlVKWKg~Sy~HnTWe~ee~L~~----~~gl-kKl~nf~kk~ 85 (177)
T 2h1e_A 11 DFHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQ----VRGL-KRLDNYCKQF 85 (177)
T ss_dssp CCCCEEEEEEEEECTTSCGGGGCCSSCCCHHHHHHHEEEEEEETTSCGGGCEEECHHHHCS----CTTH-HHHHHHHHHH
T ss_pred CCCcceeeecCCccccccccccccccCcccCCCCCceEEEEEECCCccccCeecCHHHHhh----chHH-HHHHHHHHHh
Confidence 35678999998754322110 00001111223457999999999999999999999952 4555 3678887765
Q ss_pred cc--------CCCCchhhh----------ccCCccchhhhHhhhhc-----CCcceeeEeeecccccccccccCCCCcc-
Q 003450 175 SS--------NNNAEEDFV----------AIRPEWTTVDRILACRG-----EDDEKEYLVKYKELSYDECYWEYESDIS- 230 (819)
Q Consensus 175 ~~--------~~~~~~~~~----------~~~~~~~~~eril~~~~-----~~~~~~~lvKw~~l~y~~~TWE~~~~~~- 230 (819)
.. ...+.++.. .+.++|++|||||+++. ..+..+|||||+||+|++||||+++++.
T Consensus 86 ~~~e~~~~~~~~~~~ed~E~~~~~~e~~~~~~~e~~~VErIi~~r~~~~~~~~~~~~YLVKWkgl~y~e~TWE~~~~~~~ 165 (177)
T 2h1e_A 86 IIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVK 165 (177)
T ss_dssp THHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEEECTTSCEEEEEEEEETTSCSTTCEEEEHHHHHH
T ss_pred hhhhhhhhcccCCChHHHHHhhhhhhhhhhcccccceeEEEEEEeeecccCCCCcEEEEEEeCCCCcccccccChHHhhh
Confidence 31 122222221 24579999999999994 6788999999999999999999988765
Q ss_pred ccHHHHHHHHH
Q 003450 231 AFQPEIERFIK 241 (819)
Q Consensus 231 ~~~~~~~~~~~ 241 (819)
.++..|++|.+
T Consensus 166 ~~~~~I~~y~~ 176 (177)
T 2h1e_A 166 LAPEQVKHFQK 176 (177)
T ss_dssp HCHHHHHHHTC
T ss_pred hHHHHHHHHHh
Confidence 37888888853
No 48
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.83 E-value=5.1e-21 Score=213.29 Aligned_cols=95 Identities=14% Similarity=0.099 Sum_probs=84.3
Q ss_pred cCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCE----
Q 003450 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADT---- 698 (819)
Q Consensus 623 ~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~---- 698 (819)
.+.++|||++.....+.+.+.|...|+++..++|. +|+++++.|.++... +|++|.++++|||++ +.+
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~---vLVaT~v~e~GiDip-~~~VI~~ 241 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD---FVITTDISEMGANFK-ADRVIDP 241 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS---EEEECGGGGTSCCCC-CSEEEEC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe---EEEECchHHcCcccC-CcEEEec
Confidence 46689999999999999999999999999999996 688899999876544 899999999999999 555
Q ss_pred -------------EEEeCCCCCcchHHHHhHhhhhcCCCC
Q 003450 699 -------------VIIYDSDWNPHADLQAMARAHRLGQTN 725 (819)
Q Consensus 699 -------------VI~~d~~wnp~~~~Qa~gR~~R~Gq~~ 725 (819)
||+++.+.++..+.|++||++|.|...
T Consensus 242 g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~ 281 (431)
T 2v6i_A 242 RKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKL 281 (431)
T ss_dssp CEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred CccccceecccceeecccccCCHHHHHHhhhccCCCCCCC
Confidence 577889999999999999999999654
No 49
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=99.83 E-value=2.3e-22 Score=192.29 Aligned_cols=143 Identities=28% Similarity=0.494 Sum_probs=100.3
Q ss_pred CCCcccccccccccccCcCCC-CC----ccc--------ccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhH
Q 003450 97 SPLNDIDKILDCEMRPTVAGD-SD----VSK--------LGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRL 163 (819)
Q Consensus 97 ~~~~~~~~il~~r~~p~~~~~-~~----~~~--------~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~ 163 (819)
.....|++||.||+....+.. .. +.. .........+|||||+|+||.||+|+|+++|.+.. .. .
T Consensus 11 ~~~~~i~~il~~r~gk~~~~~~~~~~y~VE~i~d~~~~ld~r~~~~~~eYlVKWkg~s~~h~tWe~~~~L~~~~--~~-~ 87 (187)
T 2b2y_A 11 EEFETIERFMDCRIGRKGATGATTTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQN--VR-G 87 (187)
T ss_dssp -CCCBEEEEEEEEEECTTCCSSSSSHHHHHHHCCTTTTCC-CCSCCEEEEEEEETTSCGGGCEEECHHHHHHTT--CB-C
T ss_pred hhhhhHHHhhhhhcCCCCCCCCCceeEEeeccCCcccccCccccCCcEEEEEEECCCCcccCeeCCHHHhCccc--hh-h
Confidence 345789999999984433221 00 000 11111235799999999999999999999998631 11 1
Q ss_pred HHHHHhHHhhhccC-----CCCchh----------hhccCCccchhhhHhhhhc---CCcceeeEeeecccccccccccC
Q 003450 164 RTKVNNFHRQMSSN-----NNAEED----------FVAIRPEWTTVDRILACRG---EDDEKEYLVKYKELSYDECYWEY 225 (819)
Q Consensus 164 ~~~~~~f~~~~~~~-----~~~~~~----------~~~~~~~~~~~eril~~~~---~~~~~~~lvKw~~l~y~~~TWE~ 225 (819)
..++++|.++.... ..+.++ ...+.++|++|||||+++. .++..+|||||+||+|++||||+
T Consensus 88 ~~kl~nf~kk~~~~~~~~~~~s~Ed~e~~~~~~e~~~~~~~e~~~VErIi~~r~~~~~~g~~~yLVKWkgl~Y~e~TWE~ 167 (187)
T 2b2y_A 88 MKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWED 167 (187)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEEC
T ss_pred HHHHHHHHHhhhccccccccCCHHHHhhhhhhhhHHhhhhhhcceeEEEEEeeeecCCCCcEEEEEEECCCChhhCcccc
Confidence 35788887765421 112222 1236789999999999986 57889999999999999999999
Q ss_pred CCCcc-ccHHHHHHHHHH
Q 003450 226 ESDIS-AFQPEIERFIKI 242 (819)
Q Consensus 226 ~~~~~-~~~~~~~~~~~~ 242 (819)
++++. .++..|++|.++
T Consensus 168 ~~~i~~~~~~~I~~f~~R 185 (187)
T 2b2y_A 168 GALISKKFQACIDEYFSR 185 (187)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhHHHHHHHHHhh
Confidence 88764 578889999864
No 50
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.82 E-value=4.3e-20 Score=206.24 Aligned_cols=98 Identities=12% Similarity=0.098 Sum_probs=79.4
Q ss_pred hcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEE
Q 003450 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (819)
Q Consensus 622 ~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~ 701 (819)
+.+.++||||+.....+.+.+.|...|+++..++| ++|+++++.|+++... +|++|+++++|||++ +++||+
T Consensus 175 ~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~---vLVaT~v~e~GiDip-v~~VI~ 246 (440)
T 1yks_A 175 ADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPD---FILATDIAEMGANLC-VERVLD 246 (440)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCS---EEEESSSTTCCTTCC-CSEEEE
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCce---EEEECChhheeeccC-ceEEEe
Confidence 35789999999999999999999999999999999 4688999999876544 899999999999999 999986
Q ss_pred -------------------eCCCCCcchHHHHhHhhhhcC-CCCcE
Q 003450 702 -------------------YDSDWNPHADLQAMARAHRLG-QTNKV 727 (819)
Q Consensus 702 -------------------~d~~wnp~~~~Qa~gR~~R~G-q~~~V 727 (819)
++.+.++..+.|+.||++|.| +...+
T Consensus 247 ~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~ 292 (440)
T 1yks_A 247 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDS 292 (440)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEE
T ss_pred CCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceE
Confidence 899999999999999999985 43333
No 51
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.82 E-value=2.7e-20 Score=208.92 Aligned_cols=95 Identities=13% Similarity=0.093 Sum_probs=85.1
Q ss_pred cCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEe
Q 003450 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIY 702 (819)
Q Consensus 623 ~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~ 702 (819)
.+.++|||++.....+.+.+.|...|+.+..++|.+ ++++++.|.++... +|++|+++++|||++. ++||.+
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~---vLVaT~v~~~GiDip~-~~VI~~ 258 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWD---FVVTTDISEMGANFRA-GRVIDP 258 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSCCS---EEEECGGGGSSCCCCC-SEEEEC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCCce---EEEECCHHHhCcCCCC-CEEEEC
Confidence 466999999999999999999999999999999864 46789999875543 8999999999999999 999998
Q ss_pred C--------------------CCCCcchHHHHhHhhhhcCCCC
Q 003450 703 D--------------------SDWNPHADLQAMARAHRLGQTN 725 (819)
Q Consensus 703 d--------------------~~wnp~~~~Qa~gR~~R~Gq~~ 725 (819)
| .+.++..+.|++||++|.|..+
T Consensus 259 ~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~ 301 (451)
T 2jlq_A 259 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE 301 (451)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred CCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCC
Confidence 8 8899999999999999999743
No 52
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.81 E-value=1.6e-20 Score=215.57 Aligned_cols=118 Identities=17% Similarity=0.155 Sum_probs=103.0
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
...|..+|.+++......|.+|||||......+.|...|...|+++..++|.....++..+...|+.+ .++|+|+
T Consensus 423 ~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G-----~VtIATn 497 (853)
T 2fsf_A 423 EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA-----AVTIATN 497 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT-----CEEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC-----eEEEecc
Confidence 35688899998888777899999999999999999999999999999999998777776666677543 2799999
Q ss_pred cccccCCcccC-------------------------------------CEEEEeCCCCCcchHHHHhHhhhhcCCCCcEE
Q 003450 686 AGGLGINLATA-------------------------------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (819)
Q Consensus 686 a~~~GinL~~a-------------------------------------~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 728 (819)
.+|+|+|+... .+||.+|.|-++..|.|++||++|.|......
T Consensus 498 mAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~ 577 (853)
T 2fsf_A 498 MAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSR 577 (853)
T ss_dssp CCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEE
T ss_pred cccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEE
Confidence 99999999863 59999999999999999999999999876543
No 53
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.81 E-value=7.3e-19 Score=202.08 Aligned_cols=117 Identities=16% Similarity=0.104 Sum_probs=100.7
Q ss_pred CchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEecccc
Q 003450 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (819)
Q Consensus 607 s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a 686 (819)
..|...|.+.+......|.++||||......+.|...|...|+++..++|.....++..+...|+.+ .++|+|+.
T Consensus 443 ~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G-----~VtIATnm 517 (922)
T 1nkt_A 443 EAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG-----GVTVATNM 517 (922)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT-----CEEEEETT
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC-----eEEEecch
Confidence 4588888888888777899999999999999999999999999999999997666665555666432 27999999
Q ss_pred ccccCCcccC----------------------------------------------------CEEEEeCCCCCcchHHHH
Q 003450 687 GGLGINLATA----------------------------------------------------DTVIIYDSDWNPHADLQA 714 (819)
Q Consensus 687 ~~~GinL~~a----------------------------------------------------~~VI~~d~~wnp~~~~Qa 714 (819)
+|+|+|+... .+||.+|.+-++..|.|+
T Consensus 518 AgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr 597 (922)
T 1nkt_A 518 AGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQL 597 (922)
T ss_dssp CSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHH
T ss_pred hhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHH
Confidence 9999999864 499999999999999999
Q ss_pred hHhhhhcCCCCcEE
Q 003450 715 MARAHRLGQTNKVM 728 (819)
Q Consensus 715 ~gR~~R~Gq~~~V~ 728 (819)
+||++|.|......
T Consensus 598 ~GRTGRqGdpG~s~ 611 (922)
T 1nkt_A 598 RGRSGRQGDPGESR 611 (922)
T ss_dssp HHTSSGGGCCEEEE
T ss_pred hcccccCCCCeeEE
Confidence 99999999865443
No 54
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.81 E-value=4.3e-20 Score=214.77 Aligned_cols=98 Identities=15% Similarity=0.163 Sum_probs=86.1
Q ss_pred hcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEE
Q 003450 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (819)
Q Consensus 622 ~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~ 701 (819)
+.+.++|||++.....+.+.+.|...|+++..++|. +|+++++.|.++... +|++|+++++|||++ +++||+
T Consensus 408 ~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~---VLVaTdv~e~GIDip-v~~VI~ 479 (673)
T 2wv9_A 408 DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFG-ASRVID 479 (673)
T ss_dssp SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCS---EEEECGGGGTTCCCC-CSEEEE
T ss_pred hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCce---EEEECchhhcceeeC-CcEEEE
Confidence 357899999999999999999999999999999993 789999999876543 899999999999999 999997
Q ss_pred --------------------eCCCCCcchHHHHhHhhhhcC-CCCcE
Q 003450 702 --------------------YDSDWNPHADLQAMARAHRLG-QTNKV 727 (819)
Q Consensus 702 --------------------~d~~wnp~~~~Qa~gR~~R~G-q~~~V 727 (819)
||.|.++..+.|++||++|.| +...+
T Consensus 480 ~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~a 526 (673)
T 2wv9_A 480 CRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDE 526 (673)
T ss_dssp CCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEE
T ss_pred CCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEE
Confidence 567888899999999999994 44433
No 55
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.80 E-value=4.8e-20 Score=207.19 Aligned_cols=105 Identities=12% Similarity=0.081 Sum_probs=87.0
Q ss_pred cCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEE-
Q 003450 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII- 701 (819)
Q Consensus 623 ~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~- 701 (819)
.+.++|||++.....+.+.+.|...|+.+..++|. +|+++++.|.++... +|++|+++++|||++. ++||.
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~---iLVaT~v~~~GiDip~-~~VI~~ 260 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFGA-SRVIDC 260 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCS---EEEESSCC---CCCSC-SEEEEC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCce---EEEECChHHhCeecCC-CEEEEC
Confidence 47799999999999999999999999999999984 678889999765443 7999999999999999 99998
Q ss_pred -------------------eCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCC
Q 003450 702 -------------------YDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (819)
Q Consensus 702 -------------------~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~ 736 (819)
||.|.++..+.|++||++|.|.... ..|.|++..
T Consensus 261 G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G-~~~~~~~~~ 313 (459)
T 2z83_A 261 RKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVG-DEYHYGGAT 313 (459)
T ss_dssp CEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCC-EEEEECSCC
T ss_pred CcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCC-eEEEEEccc
Confidence 7899999999999999999996322 334555554
No 56
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.79 E-value=1.3e-19 Score=209.45 Aligned_cols=104 Identities=12% Similarity=0.095 Sum_probs=88.9
Q ss_pred hcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEE--
Q 003450 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV-- 699 (819)
Q Consensus 622 ~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~V-- 699 (819)
+.+.++|||++.....+.+.+.|...|+++..++|. +|+++++.|.++... +|++|+++++|||++ +++|
T Consensus 353 ~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~---VLVaTdv~~rGiDi~-v~~VId 424 (618)
T 2whx_A 353 DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD---FVVTTDISEMGANFR-AGRVID 424 (618)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS---EEEECGGGGTTCCCC-CSEEEE
T ss_pred hCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE---EEEECcHHHcCcccC-ceEEEE
Confidence 347799999999999999999999999999999984 788899999876543 899999999999997 8888
Q ss_pred ------------------EEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEe
Q 003450 700 ------------------IIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLIT 734 (819)
Q Consensus 700 ------------------I~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~ 734 (819)
|++|.|-++..++||+||++|.|..+.. .|.|++
T Consensus 425 ~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~-ai~l~~ 476 (618)
T 2whx_A 425 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDD-QYVFSG 476 (618)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCE-EEEECS
T ss_pred CcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCe-EEEEcc
Confidence 7777788888999999999999864433 455565
No 57
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.78 E-value=8.9e-20 Score=208.68 Aligned_cols=260 Identities=18% Similarity=0.152 Sum_probs=170.7
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhc
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFY 380 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~~~~g~~~~r~~~~~~e~~ 380 (819)
..++.+|+.++||+|||.++...+.. ...++||++|. .+..|+.+.+.+.. +..+....|...
T Consensus 230 ~~~~~vlv~ApTGSGKT~a~~l~ll~----~g~~vLVl~PTReLA~Qia~~l~~~~-g~~vg~~vG~~~----------- 293 (666)
T 3o8b_A 230 QSFQVAHLHAPTGSGKSTKVPAAYAA----QGYKVLVLNPSVAATLGFGAYMSKAH-GIDPNIRTGVRT----------- 293 (666)
T ss_dssp SSCEEEEEECCTTSCTTTHHHHHHHH----TTCCEEEEESCHHHHHHHHHHHHHHH-SCCCEEECSSCE-----------
T ss_pred HcCCeEEEEeCCchhHHHHHHHHHHH----CCCeEEEEcchHHHHHHHHHHHHHHh-CCCeeEEECcEe-----------
Confidence 56778999999999999877655543 23489999997 56678877776665 444444444421
Q ss_pred CCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccccccCcccH-HHHHHHhcccC--
Q 003450 381 FPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSK-LFSSLKQYSTR-- 457 (819)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~~kn~~s~-~~~~l~~l~~~-- 457 (819)
.....+|+++|++.+... ..+...++++|||||||.+-..... +...+..+...
T Consensus 294 ----------------------~~~~~~IlV~TPGrLl~~-~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~ 350 (666)
T 3o8b_A 294 ----------------------ITTGAPVTYSTYGKFLAD-GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGA 350 (666)
T ss_dssp ----------------------ECCCCSEEEEEHHHHHHT-TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTC
T ss_pred ----------------------ccCCCCEEEECcHHHHhC-CCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCC
Confidence 124678999999998543 3344557889999999877322211 22333334322
Q ss_pred -cEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHHHHHHHHhhHHHHHhhhhhhhcCCCceEEEE
Q 003450 458 -HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELIL 536 (819)
Q Consensus 458 -~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~dv~~~lp~~~~~~v 536 (819)
..+++||||-.. +. ...|. ...+
T Consensus 351 ~llil~SAT~~~~----------------i~--------------------------------------~~~p~--i~~v 374 (666)
T 3o8b_A 351 RLVVLATATPPGS----------------VT--------------------------------------VPHPN--IEEV 374 (666)
T ss_dssp SEEEEEESSCTTC----------------CC--------------------------------------CCCTT--EEEE
T ss_pred ceEEEECCCCCcc----------------cc--------------------------------------cCCcc--eEEE
Confidence 357889998431 00 00000 0000
Q ss_pred EecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHH
Q 003450 537 RVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKM 616 (819)
Q Consensus 537 ~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~l 616 (819)
....... . ++. . ....+
T Consensus 375 ~~~~~~~-----------------------i---------------~~~----~---------------~~~~l------ 391 (666)
T 3o8b_A 375 ALSNTGE-----------------------I---------------PFY----G---------------KAIPI------ 391 (666)
T ss_dssp ECBSCSS-----------------------E---------------EET----T---------------EEECG------
T ss_pred eecccch-----------------------h---------------HHH----H---------------hhhhh------
Confidence 0000000 0 000 0 00000
Q ss_pred HHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccC
Q 003450 617 MVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATA 696 (819)
Q Consensus 617 l~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a 696 (819)
. ...+.++|||++.....+.+.+.|...|+++..++|++++++ |.++. . .+|++|+++++|||++ +
T Consensus 392 -~--~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~--~-~VLVATdVaerGIDId-V 457 (666)
T 3o8b_A 392 -E--AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIG--D-VVVVATDALMTGYTGD-F 457 (666)
T ss_dssp -G--GSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSS--C-EEEEECTTHHHHCCCC-B
T ss_pred -h--hccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCC--C-cEEEECChHHccCCCC-C
Confidence 0 014779999999999999999999999999999999998774 33322 2 4899999999999996 9
Q ss_pred CEEE----------EeC-----------CCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCC
Q 003450 697 DTVI----------IYD-----------SDWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (819)
Q Consensus 697 ~~VI----------~~d-----------~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~T 737 (819)
+.|| +|| .|-++..++||+||++| |.... |.|++...
T Consensus 458 ~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~---i~lvt~~e 515 (666)
T 3o8b_A 458 DSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI---YRFVTPGE 515 (666)
T ss_dssp SEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE---EEESCCCC
T ss_pred cEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE---EEEEecch
Confidence 9988 566 67788999999999999 65433 77887654
No 58
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.77 E-value=4.7e-19 Score=186.40 Aligned_cols=163 Identities=12% Similarity=0.135 Sum_probs=120.0
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcC--CCe
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--QMN 360 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p--~~~ 360 (819)
.+|+|||.+++.++.. ++++||+++||+|||+++++++..+...+.+++|||+|. +++.||.+++.++.. ...
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~ 187 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGG
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccce
Confidence 4799999999997743 367899999999999999888877665555699999997 888999999999963 345
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccccc
Q 003450 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL 440 (819)
Q Consensus 361 v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~~ 440 (819)
+..+.|+..... ......+|+|+||+.+......+ ..++++||+||||++
T Consensus 188 ~~~~~~~~~~~~-----------------------------~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEaH~~ 237 (282)
T 1rif_A 188 IKKIGGGASKDD-----------------------------KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLA 237 (282)
T ss_dssp EEECSTTCSSTT-----------------------------CCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETGGGC
T ss_pred EEEEeCCCcchh-----------------------------hhccCCcEEEEchHHHHhhHHHH-HhhCCEEEEECCccC
Confidence 555544432110 11246789999999987654322 247899999999999
Q ss_pred cCcccHHHHHHHhc-ccCcEEEEeCCCCCCChhHHHhhhcccCC
Q 003450 441 KNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (819)
Q Consensus 441 kn~~s~~~~~l~~l-~~~~~llLTgTP~~n~~~el~~ll~~l~~ 483 (819)
.+. .....+..+ ...++++|||||.. ...+++.+..++.|
T Consensus 238 ~~~--~~~~il~~~~~~~~~l~lSATp~~-~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 238 TGK--SISSIISGLNNCMFKFGLSGSLRD-GKANIMQYVGMFGE 278 (282)
T ss_dssp CHH--HHHHHTTTCTTCCEEEEECSSCCT-TSTTHHHHHHHHCE
T ss_pred Ccc--cHHHHHHHhhcCCeEEEEeCCCCC-cchHHHHHHHhcCC
Confidence 753 444455555 57789999999954 44667776666554
No 59
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.77 E-value=2.8e-17 Score=208.51 Aligned_cols=320 Identities=16% Similarity=0.204 Sum_probs=189.5
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH-HHHhcCCCCceEEEecC-cchHHHHHHHHH-HcC--CC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGERISPHLVVAPL-STLRNWEREFAT-WAP--QM 359 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l-~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~-~~p--~~ 359 (819)
.+.|.|.+++..+ +..+.+++++.+||+|||+.+...+ ..+.....+++|+|+|. ++..|-.+++.+ +.+ +.
T Consensus 926 ~fnpiQ~q~~~~l---~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~ 1002 (1724)
T 4f92_B 926 FFNPIQTQVFNTV---YNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNK 1002 (1724)
T ss_dssp BCCHHHHHHHHHH---HSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCC
Confidence 4789999998765 4677899999999999999875544 44555555689999996 676776666654 332 67
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCC----ccceEEEec
Q 003450 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKP----IKWQCMIVD 435 (819)
Q Consensus 360 ~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~----~~~~~lIvD 435 (819)
+|..++|........ ..+.+|+|+|++.+......... -+..+||+|
T Consensus 1003 ~V~~ltGd~~~~~~~-----------------------------~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViD 1053 (1724)
T 4f92_B 1003 KVVLLTGETSTDLKL-----------------------------LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVD 1053 (1724)
T ss_dssp CEEECCSCHHHHHHH-----------------------------HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEEC
T ss_pred EEEEEECCCCcchhh-----------------------------cCCCCEEEECHHHHHHHHhCcccccccceeeEEEee
Confidence 888888876543211 13568999999987432211111 145799999
Q ss_pred ccccccCcccHHHH-HHHh-------cc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhccchHHHHH
Q 003450 436 EGHRLKNKDSKLFS-SLKQ-------YS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQIS 506 (819)
Q Consensus 436 EaH~~kn~~s~~~~-~l~~-------l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~~~~~~~~ 506 (819)
|+|.+......... .+.. .. ..+.++||||- .|..|+-..+..-....+. |...
T Consensus 1054 E~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl--~N~~dla~WL~~~~~~~~~----~~~~----------- 1116 (1724)
T 4f92_B 1054 EVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSL--SNAKDVAHWLGCSATSTFN----FHPN----------- 1116 (1724)
T ss_dssp CGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCB--TTHHHHHHHHTCCSTTEEE----CCGG-----------
T ss_pred chhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCC--CCHHHHHHHhCCCCCCeEE----eCCC-----------
Confidence 99999654332222 2221 22 33679999994 3455554433211110000 0000
Q ss_pred HHHHHHhhHHHHHhhhhhhhcCC-CceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcc
Q 003450 507 RLHRMLAPHLLRRVKKDVMKELP-PKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (819)
Q Consensus 507 ~l~~~l~~~~lrr~k~dv~~~lp-~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l 585 (819)
.-| +...++............. ...
T Consensus 1117 --------------------~RPvpL~~~i~~~~~~~~~~~~~-~~~--------------------------------- 1142 (1724)
T 4f92_B 1117 --------------------VRPVPLELHIQGFNISHTQTRLL-SMA--------------------------------- 1142 (1724)
T ss_dssp --------------------GCSSCEEEEEEEECCCSHHHHHH-TTH---------------------------------
T ss_pred --------------------CCCCCeEEEEEeccCCCchhhhh-hhc---------------------------------
Confidence 001 1112222222221111000 000
Q ss_pred cCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHh--------------------
Q 003450 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT-------------------- 645 (819)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~-------------------- 645 (819)
..+...+.. ...++++|||+..+...+.+...|.
T Consensus 1143 -------------------------~~~~~~i~~-~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l 1196 (1724)
T 4f92_B 1143 -------------------------KPVYHAITK-HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDL 1196 (1724)
T ss_dssp -------------------------HHHHHHHHH-HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHH
T ss_pred -------------------------chHHHHHHH-hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHH
Confidence 000011111 1224455555555443322222110
Q ss_pred --------------hCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEE----eCC---
Q 003450 646 --------------FKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YDS--- 704 (819)
Q Consensus 646 --------------~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~----~d~--- 704 (819)
.....+..+||+++..+|+.+.+.|.++. +.+|++|..++.|||+++...||. ||.
T Consensus 1197 ~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~---i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~ 1273 (1724)
T 4f92_B 1197 IPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGA---IQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIH 1273 (1724)
T ss_dssp HHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTS---BCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTT
T ss_pred HHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCC---CeEEEEChHHHcCCCCCccEEEEecCccccCccc
Confidence 01234788999999999999999998754 348999999999999998666662 332
Q ss_pred ---CCCcchHHHHhHhhhhcCCCCcEEEEEEEeCC
Q 003450 705 ---DWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (819)
Q Consensus 705 ---~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~ 736 (819)
+.++..+.|++||++|.|....-.++.+....
T Consensus 1274 ~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1274 AYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp EEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGG
T ss_pred ccCCCCHHHHHHhhccccCCCCCCceEEEEEecch
Confidence 46788999999999999997766666665543
No 60
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.76 E-value=3.5e-17 Score=207.67 Aligned_cols=325 Identities=14% Similarity=0.191 Sum_probs=192.5
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH-HHHhcC---------CCCceEEEecC-cchHHHHHHH
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGE---------RISPHLVVAPL-STLRNWEREF 352 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l-~~l~~~---------~~~~~LIv~P~-~ll~qW~~e~ 352 (819)
.+|.+.|..++..+ +..+.+.+++.+||+|||+.|...+ ..+.+. ...++|+|+|. +|..+-.++|
T Consensus 78 ~~ln~iQs~~~~~a---l~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 78 KTLNRIQSKLYRAA---LETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp SBCCHHHHHTHHHH---HTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH---HcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 36999999998754 4678899999999999999875544 444321 12378999996 7777777777
Q ss_pred HHHcC--CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccC----C
Q 003450 353 ATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLK----P 426 (819)
Q Consensus 353 ~~~~p--~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~----~ 426 (819)
.+.+. ++.|..++|+..... .....++|+|||++.+..-..... .
T Consensus 155 ~~~~~~~gi~V~~~tGd~~~~~-----------------------------~~~~~~~IlVtTpEkld~llr~~~~~~~l 205 (1724)
T 4f92_B 155 GKRLATYGITVAELTGDHQLCK-----------------------------EEISATQIIVCTPEKWDIITRKGGERTYT 205 (1724)
T ss_dssp HHHHTTTTCCEEECCSSCSSCC-----------------------------TTGGGCSEEEECHHHHHHHTTSSTTHHHH
T ss_pred HHHHhhCCCEEEEEECCCCCCc-----------------------------cccCCCCEEEECHHHHHHHHcCCccchhh
Confidence 66543 567888888643210 112467899999998743211111 1
Q ss_pred ccceEEEecccccccCcccHHHH-HH-------Hhcc-cCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHh
Q 003450 427 IKWQCMIVDEGHRLKNKDSKLFS-SL-------KQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFK 497 (819)
Q Consensus 427 ~~~~~lIvDEaH~~kn~~s~~~~-~l-------~~l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~ 497 (819)
-...+|||||+|.+...-+.... .+ .... .-++++||||- .|+.|+-..|. ...
T Consensus 206 ~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl--~N~~dvA~wL~---~~~------------ 268 (1724)
T 4f92_B 206 QLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATL--PNYEDVATFLR---VDP------------ 268 (1724)
T ss_dssp TTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHHHHHHTT---CCH------------
T ss_pred cCcCEEEEecchhcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHHHHHHhC---CCC------------
Confidence 24679999999988542221111 11 1222 34679999994 24444433221 100
Q ss_pred ccchHHHHHHHHHHHhhHHHHHhhhhhhhcCC-CceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHH
Q 003450 498 DINQEEQISRLHRMLAPHLLRRVKKDVMKELP-PKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMEL 576 (819)
Q Consensus 498 ~~~~~~~~~~l~~~l~~~~lrr~k~dv~~~lp-~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~l 576 (819)
.... +. ...+ .-| +...+++.+.-....+. +..+.
T Consensus 269 ----~~~~---------~~---~~~~---~RPvpL~~~~~~~~~~~~~~~-~~~~~------------------------ 304 (1724)
T 4f92_B 269 ----AKGL---------FY---FDNS---FRPVPLEQTYVGITEKKAIKR-FQIMN------------------------ 304 (1724)
T ss_dssp ----HHHE---------EE---CCGG---GCSSCEEEECCEECCCCHHHH-HHHHH------------------------
T ss_pred ----CCCe---------EE---ECCC---CccCccEEEEeccCCcchhhh-hHHHH------------------------
Confidence 0000 00 0000 011 11111111111110000 00000
Q ss_pred HHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHh----h------
Q 003450 577 RKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----F------ 646 (819)
Q Consensus 577 r~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~----~------ 646 (819)
..+.+.+... ..++++|||++.+...+.+...|. .
T Consensus 305 ----------------------------------~~~~~~v~~~-~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~ 349 (1724)
T 4f92_B 305 ----------------------------------EIVYEKIMEH-AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGL 349 (1724)
T ss_dssp ----------------------------------HHHHHHHTTC-CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTC
T ss_pred ----------------------------------HHHHHHHHHH-hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhh
Confidence 0000001000 135678888887654333333221 1
Q ss_pred ---------------------------CCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEE
Q 003450 647 ---------------------------KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (819)
Q Consensus 647 ---------------------------~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~V 699 (819)
....++..||+++.++|..+.+.|.++.- .+|++|.+++.||||++.+.|
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i---~vlvaTsTLa~GVNlPa~~vV 426 (1724)
T 4f92_B 350 FLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHI---QVLVSTATLAWGVNLPAHTVI 426 (1724)
T ss_dssp CSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCC---CEEEECHHHHHHSCCCBSEEE
T ss_pred hcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCC---eEEEEcchhHhhCCCCCceEE
Confidence 12347889999999999999999987543 489999999999999988877
Q ss_pred EE----eCCC------CCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHH
Q 003450 700 II----YDSD------WNPHADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (819)
Q Consensus 700 I~----~d~~------wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvE 739 (819)
|. ||+. .++..+.|+.|||+|.|....-.++.+...+..+
T Consensus 427 I~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~ 476 (1724)
T 4f92_B 427 IKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQ 476 (1724)
T ss_dssp EECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCC
T ss_pred EeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHH
Confidence 73 6653 5788999999999999987766666666665433
No 61
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.76 E-value=3.6e-18 Score=165.06 Aligned_cols=118 Identities=20% Similarity=0.251 Sum_probs=108.4
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
.+.|+..|.+++... .+.++||||+....++.|.+.|...|+++..++|+++..+|..+++.|+++... +|++|+
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vLvaT~ 89 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVATN 89 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEESS
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc---EEEECC
Confidence 567999999998864 567999999999999999999999999999999999999999999999876543 799999
Q ss_pred cccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEE
Q 003450 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (819)
Q Consensus 686 a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 728 (819)
++++|+|++.+++||+||+|||+..+.|++||++|.|+...+.
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~ 132 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI 132 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEE
T ss_pred chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEE
Confidence 9999999999999999999999999999999999999876543
No 62
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.76 E-value=2.8e-18 Score=164.46 Aligned_cols=133 Identities=20% Similarity=0.335 Sum_probs=114.9
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
.+.|+..|.+++... .+.++|||++....++.+.+.|...|+++..++|+++..+|+.+++.|+++... +|++|+
T Consensus 19 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vlv~T~ 93 (163)
T 2hjv_A 19 EENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYR---YLVATD 93 (163)
T ss_dssp GGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEECG
T ss_pred hHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEECC
Confidence 567999999999863 577999999999999999999999999999999999999999999999876543 799999
Q ss_pred cccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 003450 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 747 (819)
Q Consensus 686 a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~ 747 (819)
++++|+|++.+++||+||+|||+..+.|++||++|.|+...+ +.|++.. |...+....
T Consensus 94 ~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~--~~~~~~~i~ 151 (163)
T 2hjv_A 94 VAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA--ISFVTAF--EKRFLADIE 151 (163)
T ss_dssp GGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE--EEEECGG--GHHHHHHHH
T ss_pred hhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE--EEEecHH--HHHHHHHHH
Confidence 999999999999999999999999999999999999987554 4455544 344444333
No 63
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=170.67 Aligned_cols=126 Identities=19% Similarity=0.326 Sum_probs=98.0
Q ss_pred hcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEecc
Q 003450 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (819)
Q Consensus 605 ~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st 684 (819)
..+.|+..|.++|.... .+.++|||++....++.|.+.|...|+++..++|+++..+|+.+++.|+++... +|++|
T Consensus 28 ~~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vLvaT 103 (185)
T 2jgn_A 28 EESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP---ILVAT 103 (185)
T ss_dssp CGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSS---EEEEE
T ss_pred CcHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEc
Confidence 35779999999998743 578999999999999999999999999999999999999999999999876544 79999
Q ss_pred ccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCC
Q 003450 685 RAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (819)
Q Consensus 685 ~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~ 736 (819)
+++++|+|++.+++||+||+|||+..+.|++||++|.|+... ++.|++..
T Consensus 104 ~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~--~~~~~~~~ 153 (185)
T 2jgn_A 104 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL--ATSFFNER 153 (185)
T ss_dssp C------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEE--EEEEECGG
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcE--EEEEEchh
Confidence 999999999999999999999999999999999999997654 45555543
No 64
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.75 E-value=2.2e-16 Score=184.54 Aligned_cols=123 Identities=17% Similarity=0.168 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEecccccc
Q 003450 609 KLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGG 688 (819)
Q Consensus 609 Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~ 688 (819)
++..|...|....+.+.++|||+......+.|.++|...|+++..++|+++..+|.++++.|..+.. .+|++|++++
T Consensus 424 ~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~---~VLvaT~~l~ 500 (664)
T 1c4o_A 424 QILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHY---DCLVGINLLR 500 (664)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSC---SEEEESCCCC
T ss_pred hHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCc---eEEEccChhh
Confidence 3344444455555678999999999999999999999999999999999999999999999976543 3899999999
Q ss_pred ccCCcccCCEEEEeCC-----CCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCC
Q 003450 689 LGINLATADTVIIYDS-----DWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (819)
Q Consensus 689 ~GinL~~a~~VI~~d~-----~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~T 737 (819)
+|+|++.+++||++|. ++++..++|++||++|.|. -.++.|+...+
T Consensus 501 ~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~ 551 (664)
T 1c4o_A 501 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVS 551 (664)
T ss_dssp TTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCC
T ss_pred cCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCC
Confidence 9999999999999998 8899999999999999863 24555666654
No 65
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.75 E-value=4.8e-18 Score=196.91 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=94.1
Q ss_pred eEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEeCC-
Q 003450 626 RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDS- 704 (819)
Q Consensus 626 kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~- 704 (819)
..+||+.....++.+.+.|...|+.+..++|+++.++|.++++.|+++++ .+.+|++|+++++|||+ .+++||+++.
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g-~~~VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPND-PCKILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTS-SCCEEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCC-CeEEEEeCcHHHCCcCc-CccEEEECCcc
Confidence 34788888999999999999999999999999999999999999997332 33489999999999999 9999999999
Q ss_pred -------------CCCcchHHHHhHhhhhcCCC-CcEEEEEEEeC
Q 003450 705 -------------DWNPHADLQAMARAHRLGQT-NKVMIFRLITR 735 (819)
Q Consensus 705 -------------~wnp~~~~Qa~gR~~R~Gq~-~~V~v~~li~~ 735 (819)
++++..+.|+.||++|.|+. ..-.+|.+...
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 78999999999999999987 34566666443
No 66
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.75 E-value=5.3e-18 Score=201.07 Aligned_cols=113 Identities=12% Similarity=0.081 Sum_probs=95.5
Q ss_pred cCceEEEEecchhHHHHHHHHHhh-----------CCCeEEEEeccCChHHHHHHHHHhcCC--CCCcEEEEeccccccc
Q 003450 623 QGHRVLIYSQFQHMLDLLEDYLTF-----------KKWQYERIDGKVGGAERQIRIDRFNAK--NSSRFCFLLSTRAGGL 689 (819)
Q Consensus 623 ~g~kvlIFs~~~~~ld~L~~~L~~-----------~g~~~~~l~G~~~~~~R~~~i~~F~~~--~~~~~v~L~st~a~~~ 689 (819)
.+.++|||++.....+.+.+.|.. .++.+..++|+++.++|+++++.|... ..+...+|++|.++++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~ 381 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAET 381 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHh
Confidence 477999999999999888888864 688999999999999999999999611 1345568999999999
Q ss_pred cCCcccCCEEEEeCC------------------CCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCH
Q 003450 690 GINLATADTVIIYDS------------------DWNPHADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (819)
Q Consensus 690 GinL~~a~~VI~~d~------------------~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~Tv 738 (819)
|||++++++||.++. +.+...+.||.||++|. ++-.+|+|+++..+
T Consensus 382 GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 382 SLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp TCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred CcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 999999999999666 78999999999999998 44567788765544
No 67
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.75 E-value=9.9e-18 Score=170.88 Aligned_cols=144 Identities=21% Similarity=0.275 Sum_probs=110.4
Q ss_pred CCCCCCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcC
Q 003450 279 EFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP 357 (819)
Q Consensus 279 ~~~~~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p 357 (819)
.+..+.+|+|||.+++..+ ..++++||+++||+|||.++++++..+ .+++||++|. .++.||.+++.+|
T Consensus 87 ~~~~~~~l~~~Q~~ai~~~----~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~~-- 156 (237)
T 2fz4_A 87 YFDAEISLRDYQEKALERW----LVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGIF-- 156 (237)
T ss_dssp CCCCCCCCCHHHHHHHHHH----TTTSEEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHHHHHHHGGG--
T ss_pred cccCCCCcCHHHHHHHHHH----HhCCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHhC--
Confidence 3444578999999999865 455679999999999999998887764 3589999997 8889999999994
Q ss_pred CCe-EEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecc
Q 003450 358 QMN-VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDE 436 (819)
Q Consensus 358 ~~~-v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDE 436 (819)
+.. +..+.|... ...+|+|+||+.+......+. ..|++|||||
T Consensus 157 ~~~~v~~~~g~~~-----------------------------------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDE 200 (237)
T 2fz4_A 157 GEEYVGEFSGRIK-----------------------------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDE 200 (237)
T ss_dssp CGGGEEEESSSCB-----------------------------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEEC
T ss_pred CCCeEEEEeCCCC-----------------------------------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEEC
Confidence 556 777766532 245799999999876655442 3589999999
Q ss_pred cccccCcccHHHHHHHhcccCcEEEEeCCCCCCC
Q 003450 437 GHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNN 470 (819)
Q Consensus 437 aH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~ 470 (819)
||++.+.. ....+..+...++|+|||||..++
T Consensus 201 aH~l~~~~--~~~i~~~~~~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 201 VHHLPAES--YVQIAQMSIAPFRLGLTATFERED 232 (237)
T ss_dssp SSCCCTTT--HHHHHHTCCCSEEEEEEESCC---
T ss_pred CccCCChH--HHHHHHhccCCEEEEEecCCCCCC
Confidence 99997643 334455567889999999998765
No 68
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.73 E-value=9.8e-17 Score=180.39 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=100.1
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
...|...+.+.+......|.++|||+......+.|...|...|++...++|.....++..+...|..+ .++|+|+
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g-----~VtVATd 530 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG-----MVTIATN 530 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT-----CEEEEET
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC-----eEEEEcc
Confidence 34688888888888777899999999999999999999999999999999985544444444455332 2799999
Q ss_pred cccccCCcc--------cCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEE
Q 003450 686 AGGLGINLA--------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (819)
Q Consensus 686 a~~~GinL~--------~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 728 (819)
.+|+|+|+. +..+||.++.|-++..|.|++||++|.|......
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~ 581 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESI 581 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEE
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEE
Confidence 999999997 6679999999999999999999999999876543
No 69
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.73 E-value=5e-18 Score=166.73 Aligned_cols=123 Identities=22% Similarity=0.317 Sum_probs=106.5
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
.+.|+..|.+++.. .+.++|||++....++.|.+.|...|+++..++|+++..+|+++++.|+++... +|++|+
T Consensus 39 ~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vLvaT~ 112 (191)
T 2p6n_A 39 EEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKD---VLVATD 112 (191)
T ss_dssp GGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCS---EEEECH
T ss_pred hHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCE---EEEEcC
Confidence 46788888777754 467999999999999999999999999999999999999999999999876543 799999
Q ss_pred cccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCC
Q 003450 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (819)
Q Consensus 686 a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~ 736 (819)
++++|||++.+++||+||+|||+..+.|++||++|.|+...+ +.|++..
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred chhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 999999999999999999999999999999999999997654 4456654
No 70
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.72 E-value=1.8e-17 Score=159.16 Aligned_cols=123 Identities=20% Similarity=0.312 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEecccccc
Q 003450 609 KLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGG 688 (819)
Q Consensus 609 Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~ 688 (819)
|+..|.+++... .+.++|||++....++.+...|...|+.+..++|+++..+|+.+++.|+++... +|++|++++
T Consensus 17 K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~ 91 (165)
T 1fuk_A 17 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDLLA 91 (165)
T ss_dssp HHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEGGGT
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE---EEEEcChhh
Confidence 999999999874 578999999999999999999999999999999999999999999999876543 799999999
Q ss_pred ccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCH
Q 003450 689 LGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (819)
Q Consensus 689 ~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~Tv 738 (819)
+|+|++.+++||+||+|||+..+.|++||++|.|+... ++.|++.+..
T Consensus 92 ~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~--~~~~~~~~~~ 139 (165)
T 1fuk_A 92 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV--AINFVTNEDV 139 (165)
T ss_dssp TTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CE--EEEEEETTTH
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEEcchHH
Confidence 99999999999999999999999999999999997664 4566776653
No 71
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.72 E-value=2e-15 Score=176.24 Aligned_cols=121 Identities=18% Similarity=0.158 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEecccccccc
Q 003450 611 QLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLG 690 (819)
Q Consensus 611 ~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~G 690 (819)
..|...+......|.++|||+......+.|.++|...|+++..++|+++..+|.++++.|..+.. .+|++|+++++|
T Consensus 432 ~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~---~VLVaT~~l~~G 508 (661)
T 2d7d_A 432 DDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKY---DVLVGINLLREG 508 (661)
T ss_dssp HHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSC---SEEEESCCCSTT
T ss_pred HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCe---EEEEecchhhCC
Confidence 33434444555668899999999999999999999999999999999999999999999986543 389999999999
Q ss_pred CCcccCCEEEEeCC-----CCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCC
Q 003450 691 INLATADTVIIYDS-----DWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (819)
Q Consensus 691 inL~~a~~VI~~d~-----~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~T 737 (819)
+|++.+++||++|. ++++..++|++||++|.+ +-.++.|++..+
T Consensus 509 lDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~ 557 (661)
T 2d7d_A 509 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKIT 557 (661)
T ss_dssp CCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSCC
T ss_pred cccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCCC
Confidence 99999999999998 889999999999999972 334556676665
No 72
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=155.33 Aligned_cols=123 Identities=20% Similarity=0.272 Sum_probs=104.9
Q ss_pred chHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccc
Q 003450 608 GKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (819)
Q Consensus 608 ~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~ 687 (819)
.|+..|.+++... .+.++|||++....++.|...|...|+.+..++|+++..+|+.+++.|+++... +|++|+++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~---vLvaT~~~ 94 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK---VLITTNVC 94 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS---EEEECCSC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEecch
Confidence 3888888888764 467999999999999999999999999999999999999999999999876543 79999999
Q ss_pred cccCCcccCCEEEEeCCC------CCcchHHHHhHhhhhcCCCCcEEEEEEEeCCC
Q 003450 688 GLGINLATADTVIIYDSD------WNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (819)
Q Consensus 688 ~~GinL~~a~~VI~~d~~------wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~T 737 (819)
++|+|++.+++||+||+| +++..+.|++||++|.|+. -.++.|++.+.
T Consensus 95 ~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 95 ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred hcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 999999999999999999 6778999999999999865 45567776654
No 73
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.67 E-value=2.6e-16 Score=157.52 Aligned_cols=124 Identities=16% Similarity=0.268 Sum_probs=110.1
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
.+.|+..|.+++.. ..+.++|||++.....+.|.+.|...|+.+..++|+++..+|+++++.|+++... +|++|+
T Consensus 15 ~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vlvaT~ 89 (212)
T 3eaq_A 15 VRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR---VLVATD 89 (212)
T ss_dssp TTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC---EEEECT
T ss_pred HHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe---EEEecC
Confidence 46799999999975 3478999999999999999999999999999999999999999999999876543 799999
Q ss_pred cccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCC
Q 003450 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (819)
Q Consensus 686 a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~ 736 (819)
++++|||++.+++||+||+||++..+.|++||++|.|+.. .++.|++..
T Consensus 90 ~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~ 138 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 138 (212)
T ss_dssp TTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG
T ss_pred hhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh
Confidence 9999999999999999999999999999999999999764 445566554
No 74
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.49 E-value=3.8e-18 Score=164.81 Aligned_cols=118 Identities=17% Similarity=0.293 Sum_probs=107.2
Q ss_pred CchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEecccc
Q 003450 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (819)
Q Consensus 607 s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a 686 (819)
+.|+..|.+++.. ..+.++|||++....++.|.+.|...|+.+..++|+++..+|.++++.|+++.. .+|++|++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~---~vLvaT~~ 89 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV---NVLVATDV 89 (170)
Confidence 6688888888876 346799999999999999999999999999999999999999999999986543 38999999
Q ss_pred ccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEE
Q 003450 687 GGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (819)
Q Consensus 687 ~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v 729 (819)
+++|+|++.+++||+||+|||+..+.|++||++|.|+...+.+
T Consensus 90 ~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~ 132 (170)
T 2yjt_D 90 AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS 132 (170)
Confidence 9999999999999999999999999999999999998776543
No 75
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.66 E-value=7.6e-16 Score=153.87 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=112.4
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-----CCCceEEEecC-cchHHHHHHHHHHcCC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-----RISPHLVVAPL-STLRNWEREFATWAPQ 358 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~-----~~~~~LIv~P~-~ll~qW~~e~~~~~p~ 358 (819)
+|+|||.+++..+ ..++++++.++||+|||++++..+...... ...++||++|. .++.||.+++.++.+.
T Consensus 23 ~~~~~Q~~~i~~~----~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 98 (207)
T 2gxq_A 23 TPTPIQAAALPLA----LEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH 98 (207)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHH----cCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc
Confidence 6999999999887 457899999999999999876665554431 23489999997 8889999999999988
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccceEEEecc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDE 436 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~lIvDE 436 (819)
+.+..++|........... ...++|+|+|++.+.... ..+....+++||+||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~--------------------------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 152 (207)
T 2gxq_A 99 LKVVAVYGGTGYGKQKEAL--------------------------LRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDE 152 (207)
T ss_dssp SCEEEECSSSCSHHHHHHH--------------------------HHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEES
T ss_pred ceEEEEECCCChHHHHHHh--------------------------hCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEC
Confidence 8998888876544332221 125789999999886432 223344688999999
Q ss_pred cccccCc--ccHHHHHHHhcc-cCcEEEEeCCC
Q 003450 437 GHRLKNK--DSKLFSSLKQYS-TRHRVLLTGTP 466 (819)
Q Consensus 437 aH~~kn~--~s~~~~~l~~l~-~~~~llLTgTP 466 (819)
||++.+. ...+...+..+. ....+++|||+
T Consensus 153 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 185 (207)
T 2gxq_A 153 ADEMLSMGFEEEVEALLSATPPSRQTLLFSATL 185 (207)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSC
T ss_pred hhHhhccchHHHHHHHHHhCCccCeEEEEEEec
Confidence 9998543 233444444454 44679999998
No 76
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.66 E-value=1.1e-15 Score=154.44 Aligned_cols=160 Identities=13% Similarity=0.132 Sum_probs=114.4
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC--CCceEEEecC-cchHHHHHHHHHHc---CC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPL-STLRNWEREFATWA---PQ 358 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~--~~~~LIv~P~-~ll~qW~~e~~~~~---p~ 358 (819)
.|+|||.+++..+ ..++++++.++||+|||++++..+....... ..++|||+|. .++.||.+++.++. |+
T Consensus 36 ~~~~~Q~~~i~~~----~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQA----ILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 4999999999877 4568899999999999999887777665443 2389999997 88899999999986 47
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccceEEEecc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDE 436 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~lIvDE 436 (819)
+++..++|............ ...++|+|+|++.+.... ..+....++++|+||
T Consensus 112 ~~v~~~~g~~~~~~~~~~~~-------------------------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 112 VKVAVFFGGLSIKKDEEVLK-------------------------KNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 166 (220)
T ss_dssp CCEEEESCCSCHHHHHHHHH-------------------------HSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred ceEEEEeCCCChHHHHHHHh-------------------------cCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcC
Confidence 88999988765544332221 134689999999886432 223344688999999
Q ss_pred cccccCcc---cHHHHHHHhcc-cCcEEEEeCCCCCCChhHH
Q 003450 437 GHRLKNKD---SKLFSSLKQYS-TRHRVLLTGTPLQNNLDEL 474 (819)
Q Consensus 437 aH~~kn~~---s~~~~~l~~l~-~~~~llLTgTP~~n~~~el 474 (819)
||++.... ..+...+..+. ...++++||||-. .+.++
T Consensus 167 ah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~ 207 (220)
T 1t6n_A 167 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK-EIRPV 207 (220)
T ss_dssp HHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCT-TTHHH
T ss_pred HHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCH-HHHHH
Confidence 99985421 22233333343 4567999999843 34443
No 77
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.64 E-value=2.2e-15 Score=153.13 Aligned_cols=151 Identities=17% Similarity=0.178 Sum_probs=110.7
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH-HHHhcCC-CCceEEEecC-cchHHHHHHHHHHc---CC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGER-ISPHLVVAPL-STLRNWEREFATWA---PQ 358 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l-~~l~~~~-~~~~LIv~P~-~ll~qW~~e~~~~~---p~ 358 (819)
.|+|||.+++..+ ..++++++.++||+|||++++..+ ..+.... ..++|||+|. .++.||.+++.++. ++
T Consensus 46 ~~~~~Q~~~i~~~----~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 121 (230)
T 2oxc_A 46 RPSPVQLKAIPLG----RCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEG 121 (230)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 5999999999876 557899999999999999865544 4443332 3489999997 88899999999986 36
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccceEEEecc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDE 436 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~lIvDE 436 (819)
+++..++|+.......... .+.+|+|+|++.+.... ..+...++++||+||
T Consensus 122 ~~~~~~~g~~~~~~~~~~~---------------------------~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDE 174 (230)
T 2oxc_A 122 LECHVFIGGTPLSQDKTRL---------------------------KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDE 174 (230)
T ss_dssp CCEEEECTTSCHHHHHHHT---------------------------TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESS
T ss_pred ceEEEEeCCCCHHHHHHhc---------------------------cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCC
Confidence 8888888876554332221 25789999999986532 223334678999999
Q ss_pred cccccCc---ccHHHHHHHhcc-cCcEEEEeCCC
Q 003450 437 GHRLKNK---DSKLFSSLKQYS-TRHRVLLTGTP 466 (819)
Q Consensus 437 aH~~kn~---~s~~~~~l~~l~-~~~~llLTgTP 466 (819)
||++... ...+...+..+. ...++++|||+
T Consensus 175 ah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~ 208 (230)
T 2oxc_A 175 ADKLLEEGSFQEQINWIYSSLPASKQMLAVSATY 208 (230)
T ss_dssp HHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred chHhhcCcchHHHHHHHHHhCCCCCeEEEEEecc
Confidence 9998543 233444455555 45679999996
No 78
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.63 E-value=3.8e-16 Score=157.11 Aligned_cols=153 Identities=16% Similarity=0.235 Sum_probs=102.0
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-----CCCceEEEecC-cchHH-HHHHHHHH
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-----RISPHLVVAPL-STLRN-WEREFATW 355 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~-----~~~~~LIv~P~-~ll~q-W~~e~~~~ 355 (819)
+.+|+|||.+++..+ ..++++++.++||+|||++++.++..+... ...++||+||. .++.| |.+++..+
T Consensus 31 ~~~l~~~Q~~~i~~~----~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPA----LEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCCCHHHHHHHHHH----HTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CCCchHHHHHHHHHH----hcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 357999999999877 356899999999999999998887765432 24589999997 67788 99999998
Q ss_pred cC-CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccc--------cCC
Q 003450 356 AP-QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--------LKP 426 (819)
Q Consensus 356 ~p-~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~--------l~~ 426 (819)
.+ ++.+..++|.......... ....++|+|+||+.+...... +..
T Consensus 107 ~~~~~~v~~~~g~~~~~~~~~~--------------------------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~ 160 (216)
T 3b6e_A 107 LKKWYRVIGLSGDTQLKISFPE--------------------------VVKSCDIIISTAQILENSLLNLENGEDAGVQL 160 (216)
T ss_dssp HTTTSCEEECCC---CCCCHHH--------------------------HHHHCSEEEEEHHHHHHHHHC-------CCCG
T ss_pred hccCceEEEEeCCcccchhHHh--------------------------hccCCCEEEECHHHHHHHHhccCcccccccch
Confidence 75 4778777776543211111 012578999999998754332 333
Q ss_pred ccceEEEecccccccCccc--HHHHHH-Hhc--------------ccCcEEEEeCC
Q 003450 427 IKWQCMIVDEGHRLKNKDS--KLFSSL-KQY--------------STRHRVLLTGT 465 (819)
Q Consensus 427 ~~~~~lIvDEaH~~kn~~s--~~~~~l-~~l--------------~~~~~llLTgT 465 (819)
..|++||+||||++..... .....+ ... ...++|+||||
T Consensus 161 ~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 161 SDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp GGCSEEEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred hcccEEEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 5789999999999954322 121111 111 34578999998
No 79
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.63 E-value=4.4e-15 Score=148.19 Aligned_cols=152 Identities=16% Similarity=0.121 Sum_probs=110.7
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--CCCceEEEecC-cchHHHHHHHHHHcC---C
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWAP---Q 358 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~--~~~~~LIv~P~-~ll~qW~~e~~~~~p---~ 358 (819)
+|+|||.+++..+ ..++++++.++||+|||++++..+...... ...++||++|. .++.||.+++.++.. +
T Consensus 25 ~~~~~Q~~~i~~~----~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 100 (206)
T 1vec_A 25 KPSPIQEESIPIA----LSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHH----ccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 6999999999877 467899999999999998877666554432 23379999996 778999999988863 6
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccceEEEecc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDE 436 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~lIvDE 436 (819)
..+..++|........... ...++|+|+|++.+.... ..+...++++||+||
T Consensus 101 ~~~~~~~g~~~~~~~~~~~--------------------------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 154 (206)
T 1vec_A 101 AKVMATTGGTNLRDDIMRL--------------------------DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDE 154 (206)
T ss_dssp CCEEEECSSSCHHHHHHHT--------------------------TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEET
T ss_pred ceEEEEeCCccHHHHHHhc--------------------------CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEC
Confidence 7888888876655433321 135789999999986432 222334678999999
Q ss_pred cccccCcc--cHHHHHHHhcc-cCcEEEEeCCC
Q 003450 437 GHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTP 466 (819)
Q Consensus 437 aH~~kn~~--s~~~~~l~~l~-~~~~llLTgTP 466 (819)
||++...+ ..+...+..++ ...++++|||+
T Consensus 155 ah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~ 187 (206)
T 1vec_A 155 ADKLLSQDFVQIMEDIILTLPKNRQILLYSATF 187 (206)
T ss_dssp HHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred hHHhHhhCcHHHHHHHHHhCCccceEEEEEeeC
Confidence 99986532 23334444454 45789999998
No 80
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.62 E-value=3.6e-15 Score=152.31 Aligned_cols=151 Identities=13% Similarity=0.191 Sum_probs=110.0
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH-hc-----CCCCceEEEecC-cchHHHHHHHHHHcC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL-FG-----ERISPHLVVAPL-STLRNWEREFATWAP 357 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l-~~-----~~~~~~LIv~P~-~ll~qW~~e~~~~~p 357 (819)
.|+|+|.+++..+ ..++++++.++||+|||++++..+... .. ....++||++|. .++.||.+++.++..
T Consensus 47 ~~~~~Q~~~i~~~----~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 122 (236)
T 2pl3_A 47 LVTEIQKQTIGLA----LQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGK 122 (236)
T ss_dssp BCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHH----hCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhC
Confidence 6899999999877 567899999999999999876655443 22 123479999997 888999999999885
Q ss_pred --CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhccc---ccCCccceEE
Q 003450 358 --QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIKWQCM 432 (819)
Q Consensus 358 --~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~---~l~~~~~~~l 432 (819)
++.+..++|+.......... ..++|+|+|++.+..... .+...++++|
T Consensus 123 ~~~~~~~~~~g~~~~~~~~~~~---------------------------~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~l 175 (236)
T 2pl3_A 123 NHDFSAGLIIGGKDLKHEAERI---------------------------NNINILVCTPGRLLQHMDETVSFHATDLQML 175 (236)
T ss_dssp TSSCCEEEECCC--CHHHHHHH---------------------------TTCSEEEECHHHHHHHHHHCSSCCCTTCCEE
T ss_pred CCCeeEEEEECCCCHHHHHHhC---------------------------CCCCEEEECHHHHHHHHHhcCCcccccccEE
Confidence 37888888876544332221 357899999999865322 2334578899
Q ss_pred EecccccccCc--ccHHHHHHHhcc-cCcEEEEeCCC
Q 003450 433 IVDEGHRLKNK--DSKLFSSLKQYS-TRHRVLLTGTP 466 (819)
Q Consensus 433 IvDEaH~~kn~--~s~~~~~l~~l~-~~~~llLTgTP 466 (819)
|+||||++.+. ...+...+..+. ...++++|||+
T Consensus 176 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 212 (236)
T 2pl3_A 176 VLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQ 212 (236)
T ss_dssp EETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSC
T ss_pred EEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeC
Confidence 99999998653 334445555554 34579999997
No 81
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.61 E-value=2.6e-15 Score=151.47 Aligned_cols=153 Identities=11% Similarity=0.069 Sum_probs=109.3
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-C-CCceEEEecC-cchHHHHHHHHHHcC---
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-R-ISPHLVVAPL-STLRNWEREFATWAP--- 357 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~-~-~~~~LIv~P~-~ll~qW~~e~~~~~p--- 357 (819)
.+|+|+|.+++..+ ..++++++.++||+|||++++..+...... . ..++||++|. .++.||.+++.++..
T Consensus 25 ~~~~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 100 (219)
T 1q0u_A 25 YKPTEIQERIIPGA----LRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCP 100 (219)
T ss_dssp CSCCHHHHHHHHHH----HHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcc
Confidence 35899999999877 456899999999999999876655554432 2 3489999997 888999999998874
Q ss_pred ---CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccceEE
Q 003450 358 ---QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCM 432 (819)
Q Consensus 358 ---~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~l 432 (819)
+..+..+.|+......... ....++|+|+|++.+.... ..+....+++|
T Consensus 101 ~~~~~~~~~~~g~~~~~~~~~~--------------------------~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~l 154 (219)
T 1q0u_A 101 KDRMIVARCLIGGTDKQKALEK--------------------------LNVQPHIVIGTPGRINDFIREQALDVHTAHIL 154 (219)
T ss_dssp GGGCCCEEEECCCSHHHHTTCC--------------------------CSSCCSEEEECHHHHHHHHHTTCCCGGGCCEE
T ss_pred cccceEEEEEeCCCCHHHHHHH--------------------------cCCCCCEEEeCHHHHHHHHHcCCCCcCcceEE
Confidence 4677777777654321100 1135789999999886432 22333467899
Q ss_pred EecccccccCcc--cHHHHHHHhcc-cCcEEEEeCCC
Q 003450 433 IVDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTP 466 (819)
Q Consensus 433 IvDEaH~~kn~~--s~~~~~l~~l~-~~~~llLTgTP 466 (819)
|+||||++.+.+ ..+...+..+. ...++++|||+
T Consensus 155 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~ 191 (219)
T 1q0u_A 155 VVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATI 191 (219)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCC
T ss_pred EEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCC
Confidence 999999986432 34444555554 34689999997
No 82
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.61 E-value=1.2e-14 Score=150.17 Aligned_cols=167 Identities=13% Similarity=0.221 Sum_probs=115.2
Q ss_pred ccccccCCCCCCCC------CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHh-cCC----------
Q 003450 270 EFQQYEHSPEFLSG------GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GER---------- 332 (819)
Q Consensus 270 ~~~~~~~~p~~~~~------~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~-~~~---------- 332 (819)
.|..+...|..... ..|+|+|.+++..+ ..++++++.++||+|||++++..+.... ...
T Consensus 24 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i----~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 24 NFDELKLDPTIRNNILLASYQRPTPIQKNAIPAI----LEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp SSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 45555544443321 36999999999877 4578999999999999998766555433 221
Q ss_pred CCceEEEecC-cchHHHHHHHHHHcC--CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccE
Q 003450 333 ISPHLVVAPL-STLRNWEREFATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDV 409 (819)
Q Consensus 333 ~~~~LIv~P~-~ll~qW~~e~~~~~p--~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 409 (819)
..++|||+|. .++.||.+++.++.. ++.+..++|+.......... ...++|
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------------------------~~~~~I 153 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV--------------------------QMGCHL 153 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH--------------------------SSCCSE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh--------------------------CCCCCE
Confidence 2389999997 888999999999874 46777777776554433321 135789
Q ss_pred EEchhhHHhhcc--cccCCccceEEEecccccccCc--ccHHHHHHHhcc-----cCcEEEEeCCC
Q 003450 410 LLTSYEMINLDS--ASLKPIKWQCMIVDEGHRLKNK--DSKLFSSLKQYS-----TRHRVLLTGTP 466 (819)
Q Consensus 410 vi~ty~~l~~~~--~~l~~~~~~~lIvDEaH~~kn~--~s~~~~~l~~l~-----~~~~llLTgTP 466 (819)
+|+|++.+.... ..+....+++||+||||++... ...+...+..+. ...++++||||
T Consensus 154 vv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~ 219 (253)
T 1wrb_A 154 LVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATF 219 (253)
T ss_dssp EEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSC
T ss_pred EEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeC
Confidence 999999986532 2223346789999999998543 333444444322 34589999997
No 83
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.60 E-value=3.1e-15 Score=156.81 Aligned_cols=124 Identities=16% Similarity=0.265 Sum_probs=107.4
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
.+.|+..|.+++.... +.++|||++.....+.|.+.|...|+.+..++|++++.+|+.+++.|+++... +|++|+
T Consensus 12 ~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~---vLVaT~ 86 (300)
T 3i32_A 12 VRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR---VLVATD 86 (300)
T ss_dssp SSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC---EEEECS
T ss_pred HHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce---EEEEec
Confidence 5679999999997743 78999999999999999999999999999999999999999999999876543 899999
Q ss_pred cccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCC
Q 003450 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (819)
Q Consensus 686 a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~ 736 (819)
++++|||++.+++||+||++|++..+.|++||++|.|+.. .+|.|++..
T Consensus 87 va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G--~~i~l~~~~ 135 (300)
T 3i32_A 87 VAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 135 (300)
T ss_dssp TTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----C--EEEEEECSS
T ss_pred hhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCc--eEEEEeChH
Confidence 9999999999999999999999999999999999999774 445566654
No 84
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.60 E-value=6.6e-15 Score=149.04 Aligned_cols=151 Identities=14% Similarity=0.122 Sum_probs=104.0
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH-HHHhcCC-CCceEEEecC-cchHHHHHHHHHHcC--CC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGER-ISPHLVVAPL-STLRNWEREFATWAP--QM 359 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l-~~l~~~~-~~~~LIv~P~-~ll~qW~~e~~~~~p--~~ 359 (819)
.|+|||.+++..+ ..++++++.++||+|||++++..+ ..+.... ..++||++|. .++.||.+++.++.+ ++
T Consensus 36 ~~~~~Q~~~i~~~----~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (224)
T 1qde_A 36 EPSAIQQRAIMPI----IEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 111 (224)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCcHHHHHHHHHH----hcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCc
Confidence 6999999999877 467889999999999999854444 4443322 3489999997 788999999999875 56
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccceEEEeccc
Q 003450 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEG 437 (819)
Q Consensus 360 ~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~lIvDEa 437 (819)
.+..++|+......... ....+|+|+|++.+.... ..+...++++||+|||
T Consensus 112 ~~~~~~g~~~~~~~~~~---------------------------~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEa 164 (224)
T 1qde_A 112 KVHACIGGTSFVEDAEG---------------------------LRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEA 164 (224)
T ss_dssp CEEEECC-------------------------------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred eEEEEeCCcchHHHHhc---------------------------CCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcCh
Confidence 77777776543321111 123789999999986432 2233346889999999
Q ss_pred ccccCcc--cHHHHHHHhcc-cCcEEEEeCCC
Q 003450 438 HRLKNKD--SKLFSSLKQYS-TRHRVLLTGTP 466 (819)
Q Consensus 438 H~~kn~~--s~~~~~l~~l~-~~~~llLTgTP 466 (819)
|++.+.+ ..+...+..+. ...+++||||+
T Consensus 165 h~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~ 196 (224)
T 1qde_A 165 DEMLSSGFKEQIYQIFTLLPPTTQVVLLSATM 196 (224)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEEESSC
T ss_pred hHHhhhhhHHHHHHHHHhCCccCeEEEEEeec
Confidence 9985432 33444444453 34579999998
No 85
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.59 E-value=8.1e-15 Score=150.74 Aligned_cols=152 Identities=16% Similarity=0.165 Sum_probs=110.5
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHH-HhcCC-CCceEEEecC-cchHHHHHHHHHHcC--CC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLAS-LFGER-ISPHLVVAPL-STLRNWEREFATWAP--QM 359 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~-l~~~~-~~~~LIv~P~-~ll~qW~~e~~~~~p--~~ 359 (819)
.|+|+|.+++..+ ..++++++.++||+|||++++..+.. +.... ..++||++|. .++.||.+++.++.. ++
T Consensus 65 ~~~~~Q~~~i~~i----~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~ 140 (249)
T 3ber_A 65 KPTKIQIEAIPLA----LQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGV 140 (249)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCHHHHHHHHHH----hCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 6999999999877 46789999999999999987655544 33333 3479999997 788999999998864 67
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc---cccCCccceEEEecc
Q 003450 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQCMIVDE 436 (819)
Q Consensus 360 ~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~---~~l~~~~~~~lIvDE 436 (819)
.+..++|+.......... ...++|+|+|++.+.... ..+....+++||+||
T Consensus 141 ~~~~~~g~~~~~~~~~~~--------------------------~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 141 QSAVIVGGIDSMSQSLAL--------------------------AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp CEEEECTTSCHHHHHHHH--------------------------HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred eEEEEECCCChHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcC
Confidence 788888876544322221 135789999999986532 223334678999999
Q ss_pred cccccCc--ccHHHHHHHhcc-cCcEEEEeCCC
Q 003450 437 GHRLKNK--DSKLFSSLKQYS-TRHRVLLTGTP 466 (819)
Q Consensus 437 aH~~kn~--~s~~~~~l~~l~-~~~~llLTgTP 466 (819)
||++.+. ...+...+..+. ...++++|||+
T Consensus 195 ah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~ 227 (249)
T 3ber_A 195 ADRILNMDFETEVDKILKVIPRDRKTFLFSATM 227 (249)
T ss_dssp HHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSC
T ss_pred hhhhhccChHHHHHHHHHhCCCCCeEEEEeccC
Confidence 9998653 233444455554 45679999997
No 86
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.58 E-value=9.9e-15 Score=149.06 Aligned_cols=153 Identities=15% Similarity=0.160 Sum_probs=105.5
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--CCCceEEEecC-cchHHHHHHHHHHcC--CC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWAP--QM 359 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~--~~~~~LIv~P~-~ll~qW~~e~~~~~p--~~ 359 (819)
.|+|+|.+++..+ ..++++++.++||+|||++++..+...... ...++|||+|. .++.||.+++.++.. +.
T Consensus 52 ~~~~~Q~~ai~~i----~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 127 (237)
T 3bor_A 52 KPSAIQQRAIIPC----IKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGA 127 (237)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCc
Confidence 5999999999877 467899999999999999876666554432 23489999997 888999999999875 46
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccceEEEeccc
Q 003450 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEG 437 (819)
Q Consensus 360 ~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~lIvDEa 437 (819)
.+..+.|+.......... ....++|+|+|++.+.... ..+....+++||+|||
T Consensus 128 ~~~~~~g~~~~~~~~~~l-------------------------~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEa 182 (237)
T 3bor_A 128 TCHACIGGTNVRNEMQKL-------------------------QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEA 182 (237)
T ss_dssp CEEEECC--------------------------------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESH
T ss_pred eEEEEECCCchHHHHHHH-------------------------hcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCc
Confidence 677777765443221111 1124789999999876432 2233346789999999
Q ss_pred ccccC--cccHHHHHHHhcc-cCcEEEEeCCC
Q 003450 438 HRLKN--KDSKLFSSLKQYS-TRHRVLLTGTP 466 (819)
Q Consensus 438 H~~kn--~~s~~~~~l~~l~-~~~~llLTgTP 466 (819)
|++.. ....+...+..+. ....+++|||+
T Consensus 183 h~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~ 214 (237)
T 3bor_A 183 DEMLSRGFKDQIYEIFQKLNTSIQVVLLSATM 214 (237)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEECSSC
T ss_pred hHhhccCcHHHHHHHHHhCCCCCeEEEEEEec
Confidence 99843 3344555555564 34679999998
No 87
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.56 E-value=3.7e-14 Score=143.90 Aligned_cols=152 Identities=15% Similarity=0.204 Sum_probs=105.9
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC--------CCCceEEEecC-cchHHHHHHHHHH
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--------RISPHLVVAPL-STLRNWEREFATW 355 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~--------~~~~~LIv~P~-~ll~qW~~e~~~~ 355 (819)
+++|+|.+++..+ ..++++++.++||+|||+.++..+...... ....+||++|. .+..||.+++.++
T Consensus 42 ~~~~~Q~~~i~~~----~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 42 KPTPIQSQAWPII----LQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 6999999999877 567899999999999999876655443321 23479999996 7889999999998
Q ss_pred c-CCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccceEE
Q 003450 356 A-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCM 432 (819)
Q Consensus 356 ~-p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~l 432 (819)
. +++.+..++|........... ...++|+|+|++.+.... ..+...++++|
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~l 171 (228)
T 3iuy_A 118 SYKGLKSICIYGGRNRNGQIEDI--------------------------SKGVDIIIATPGRLNDLQMNNSVNLRSITYL 171 (228)
T ss_dssp CCTTCCEEEECC------CHHHH--------------------------HSCCSEEEECHHHHHHHHHTTCCCCTTCCEE
T ss_pred cccCceEEEEECCCChHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCcCcccceEE
Confidence 5 477888888776544322221 135789999999986532 22333467899
Q ss_pred EecccccccCc--ccHHHHHHHhcc-cCcEEEEeCCC
Q 003450 433 IVDEGHRLKNK--DSKLFSSLKQYS-TRHRVLLTGTP 466 (819)
Q Consensus 433 IvDEaH~~kn~--~s~~~~~l~~l~-~~~~llLTgTP 466 (819)
|+||||++... .......+..+. ....+++|||.
T Consensus 172 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 172 VIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATW 208 (228)
T ss_dssp EECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred EEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeC
Confidence 99999998543 233444455554 34678999995
No 88
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.50 E-value=1.5e-13 Score=140.79 Aligned_cols=152 Identities=13% Similarity=0.138 Sum_probs=107.6
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHH-HhcC------CCCceEEEecC-cchHHHHHHHHHHc
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLAS-LFGE------RISPHLVVAPL-STLRNWEREFATWA 356 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~-l~~~------~~~~~LIv~P~-~ll~qW~~e~~~~~ 356 (819)
.++|+|.+++..+ ..++++++.++||+|||+.++..+.. +... ....+||++|. .++.||.+.+.++.
T Consensus 51 ~~~~~Q~~~i~~~----~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 126 (242)
T 3fe2_A 51 EPTAIQAQGWPVA----LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC 126 (242)
T ss_dssp SCCHHHHHHHHHH----HHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH
Confidence 5999999999876 46789999999999999986655444 3321 23379999996 77889999888875
Q ss_pred --CCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccceEE
Q 003450 357 --PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCM 432 (819)
Q Consensus 357 --p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~l 432 (819)
.++.+..++|........... ...++|+|+|++.+.... ..+...++++|
T Consensus 127 ~~~~~~~~~~~g~~~~~~~~~~~--------------------------~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~l 180 (242)
T 3fe2_A 127 RACRLKSTCIYGGAPKGPQIRDL--------------------------ERGVEICIATPGRLIDFLECGKTNLRRTTYL 180 (242)
T ss_dssp HHTTCCEEEECTTSCHHHHHHHH--------------------------HHCCSEEEECHHHHHHHHHHTSCCCTTCCEE
T ss_pred hhcCceEEEEECCCChHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCCCcccccEE
Confidence 367888888876554433332 124789999999886432 22233467899
Q ss_pred EecccccccCc--ccHHHHHHHhcc-cCcEEEEeCCC
Q 003450 433 IVDEGHRLKNK--DSKLFSSLKQYS-TRHRVLLTGTP 466 (819)
Q Consensus 433 IvDEaH~~kn~--~s~~~~~l~~l~-~~~~llLTgTP 466 (819)
|+||||++-.. .......+..+. ....+++|||+
T Consensus 181 ViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 181 VLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp EETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCC
T ss_pred EEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeec
Confidence 99999998543 233344444443 34678999996
No 89
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.50 E-value=6.6e-14 Score=143.76 Aligned_cols=153 Identities=16% Similarity=0.226 Sum_probs=104.0
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC---CCCceEEEecC-cchHHHHHHHHHHcC--C
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE---RISPHLVVAPL-STLRNWEREFATWAP--Q 358 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~---~~~~~LIv~P~-~ll~qW~~e~~~~~p--~ 358 (819)
.|+|+|.+++..+ ..++++++.++||+|||++++..+...... ...++|||+|. .++.||.+++.+++. +
T Consensus 51 ~~~~~Q~~~i~~~----~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (245)
T 3dkp_A 51 MPTPIQMQAIPVM----LHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG 126 (245)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 5999999999876 467889999999999999876555444332 22379999997 788999999999875 4
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhccc----ccCCccceEEEe
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA----SLKPIKWQCMIV 434 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~----~l~~~~~~~lIv 434 (819)
+.+..++|....... + ......+++|+|+|++.+..... .+...++++||+
T Consensus 127 ~~~~~~~~~~~~~~~---~----------------------~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 127 FRIHMIHKAAVAAKK---F----------------------GPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp CCEECCCHHHHHHTT---T----------------------STTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEE
T ss_pred ceEEEEecCccHHHH---h----------------------hhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEE
Confidence 555555544332210 0 00112467999999999864321 233346789999
Q ss_pred cccccccCc-----ccHHHHHHHhc--ccCcEEEEeCCC
Q 003450 435 DEGHRLKNK-----DSKLFSSLKQY--STRHRVLLTGTP 466 (819)
Q Consensus 435 DEaH~~kn~-----~s~~~~~l~~l--~~~~~llLTgTP 466 (819)
||||++... ...+...+..+ ....+++||||+
T Consensus 182 DEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 182 DESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp SSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSC
T ss_pred eChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccC
Confidence 999998542 12233333333 234679999997
No 90
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.50 E-value=1.4e-14 Score=118.00 Aligned_cols=51 Identities=27% Similarity=0.873 Sum_probs=47.6
Q ss_pred cccccccccccCCCCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 48 DAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 48 ~~~~~~C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
+.+.++|.+|+++|+||+||.|+++||+.|+.||+..+|.|+|+|+.|...
T Consensus 22 d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 456778999999999999999999999999999999999999999999864
No 91
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.50 E-value=9.4e-14 Score=143.91 Aligned_cols=152 Identities=14% Similarity=0.184 Sum_probs=107.6
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH-hcC-----CCCceEEEecC-cchHHHHHHHHHHcC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL-FGE-----RISPHLVVAPL-STLRNWEREFATWAP 357 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l-~~~-----~~~~~LIv~P~-~ll~qW~~e~~~~~p 357 (819)
+|+|+|.+++..+ ..++++|+.++||+|||+.++..+... ... ....+|||+|. .++.||.+++.+++.
T Consensus 76 ~~~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 76 NMTEIQHKSIRPL----LEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp BCCHHHHHHHHHH----HHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHH----hCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 4899999999876 346889999999999999866555443 221 23479999997 888999999999875
Q ss_pred --CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhccc---ccCCccceEE
Q 003450 358 --QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIKWQCM 432 (819)
Q Consensus 358 --~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~---~l~~~~~~~l 432 (819)
+..+..+.|........... ...++|+|+|++.+..... .+...++++|
T Consensus 152 ~~~~~~~~~~g~~~~~~~~~~~--------------------------~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~l 205 (262)
T 3ly5_A 152 HHVHTYGLIMGGSNRSAEAQKL--------------------------GNGINIIVATPGRLLDHMQNTPGFMYKNLQCL 205 (262)
T ss_dssp TCCSCEEEECSSSCHHHHHHHH--------------------------HHCCSEEEECHHHHHHHHHHCTTCCCTTCCEE
T ss_pred hcCceEEEEECCCCHHHHHHHh--------------------------cCCCCEEEEcHHHHHHHHHccCCcccccCCEE
Confidence 46677777766554433321 1247899999998864322 2233457899
Q ss_pred EecccccccCc--ccHHHHHHHhcc-cCcEEEEeCCC
Q 003450 433 IVDEGHRLKNK--DSKLFSSLKQYS-TRHRVLLTGTP 466 (819)
Q Consensus 433 IvDEaH~~kn~--~s~~~~~l~~l~-~~~~llLTgTP 466 (819)
|+||||++-.. ...+...+..+. ....++||||+
T Consensus 206 ViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~ 242 (262)
T 3ly5_A 206 VIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQ 242 (262)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSC
T ss_pred EEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecC
Confidence 99999997543 233444455554 34679999997
No 92
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.49 E-value=1.1e-12 Score=150.59 Aligned_cols=143 Identities=20% Similarity=0.208 Sum_probs=94.5
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHH-HHhcCCCCceEEEecCcch-HH---HHHHHHHHcC
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGERISPHLVVAPLSTL-RN---WEREFATWAP 357 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~-~l~~~~~~~~LIv~P~~ll-~q---W~~e~~~~~p 357 (819)
|..++|-|..++--| ..|+ |....||+|||++++..+. ... ....++||+|+.-+ .| |...+.+++
T Consensus 77 G~~Pt~VQ~~~ip~L----lqG~--IaeakTGeGKTLvf~Lp~~L~aL--~G~qv~VvTPTreLA~Qdae~m~~l~~~l- 147 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVL----HEGK--IAEMKTGEGKTLVATLAVALNAL--TGKGVHVVTVNDYLARRDAEWMGPVYRGL- 147 (997)
T ss_dssp CCCCCHHHHHHHHHH----HTTS--EEECCSTHHHHHHHHHHHHHHHT--TCSCCEEEESSHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCcHHHHhhcccc----cCCc--eeeccCCCchHHHHHHHHHHHHH--hCCCEEEEeCCHHHHHHHHHHHHHHHHhc-
Confidence 346788999998766 3444 8899999999998655442 222 22479999998555 33 677777766
Q ss_pred CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHh----hcc-----cccCCc-
Q 003450 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMIN----LDS-----ASLKPI- 427 (819)
Q Consensus 358 ~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~----~~~-----~~l~~~- 427 (819)
++++.+++|+........ ....+|++.|+..+. .+. ..+...
T Consensus 148 GLsv~~i~Gg~~~~~r~~----------------------------ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~ 199 (997)
T 2ipc_A 148 GLSVGVIQHASTPAERRK----------------------------AYLADVTYVTNSELGFDYLRDNMAISPDQLVLRH 199 (997)
T ss_dssp TCCEEECCTTCCHHHHHH----------------------------HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCS
T ss_pred CCeEEEEeCCCCHHHHHH----------------------------HcCCCEEEECchhhhhHHHHHhhhcchhhccccc
Confidence 788988888755322111 135799999999883 111 122223
Q ss_pred --cceEEEecccccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHH
Q 003450 428 --KWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELF 475 (819)
Q Consensus 428 --~~~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~ 475 (819)
+..++||||+|++--. .+..-+.+|| |.... ..+|
T Consensus 200 d~~l~~lIIDEaDsmLiD-----------eartPLIISg-p~~~~-~~lY 236 (997)
T 2ipc_A 200 DHPLHYAIIDEVDSILID-----------EARTPLIISG-PAEKA-TDLY 236 (997)
T ss_dssp SSSSCEEEETTHHHHTTS-----------STTSCEEEEE-SCSSC-HHHH
T ss_pred CCCcceEEEechHHHHHh-----------CCCCCeeeeC-CCccc-hHHH
Confidence 5789999999975321 1223388999 87766 4444
No 93
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=99.48 E-value=8.8e-15 Score=111.88 Aligned_cols=57 Identities=28% Similarity=0.639 Sum_probs=50.8
Q ss_pred hccCCccchhhhHhhhhc-CCcceeeEeeecccccccccccCCC-CccccHHHHHHHHH
Q 003450 185 VAIRPEWTTVDRILACRG-EDDEKEYLVKYKELSYDECYWEYES-DISAFQPEIERFIK 241 (819)
Q Consensus 185 ~~~~~~~~~~eril~~~~-~~~~~~~lvKw~~l~y~~~TWE~~~-~~~~~~~~~~~~~~ 241 (819)
..++|+|.+|||||++|. .++..+|||||+||+|++||||+++ ++..++.+|+.|.+
T Consensus 5 ~~~~pe~~~VeRIi~~r~~~~g~~eYLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y~~ 63 (64)
T 2ee1_A 5 SSGKPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSYWN 63 (64)
T ss_dssp SSSCCSSCCCCCCCEEEECTTCCEEEEECCTTSCTTTCEEEETTCCCTTHHHHHHHHHH
T ss_pred cccCCCcEEEEEEEEEEecCCCCEEEEEEEcCCCcccCcccCCcccCcchHHHHHHHHh
Confidence 458999999999999996 5788999999999999999999988 67778889999975
No 94
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.48 E-value=2.7e-14 Score=109.90 Aligned_cols=52 Identities=42% Similarity=1.103 Sum_probs=47.9
Q ss_pred cccccccccccCCCCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCCC
Q 003450 48 DAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (819)
Q Consensus 48 ~~~~~~C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~ 99 (819)
+.++.+|.+|+++|+||+||.|+++||+.|+.||+..+|.|+|+|+.|....
T Consensus 6 d~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 4567889999999999999999999999999999999999999999998643
No 95
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.46 E-value=2.7e-14 Score=111.07 Aligned_cols=50 Identities=28% Similarity=0.795 Sum_probs=46.1
Q ss_pred ccccccccccCCCCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 49 AKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 49 ~~~~~C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
.+...|.+|+++++||+||.|+++||++|+.|++..+|.|+|+|+.|...
T Consensus 10 ~~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34566999999999999999999999999999999999999999999864
No 96
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.43 E-value=4e-12 Score=145.49 Aligned_cols=79 Identities=19% Similarity=0.177 Sum_probs=58.2
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeE
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNV 361 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v 361 (819)
|.++||+|.+.+..+...+..++++++..+||+|||+.++..+... ..+++|++|+ ++..|+.+++.++ ++++
T Consensus 5 ~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~----~~~~~~~~~t~~l~~q~~~~~~~l--~~~~ 78 (540)
T 2vl7_A 5 KLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL----KKKVLIFTRTHSQLDSIYKNAKLL--GLKT 78 (540)
T ss_dssp ----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----TCEEEEEESCHHHHHHHHHHHGGG--TCCE
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC----CCcEEEEcCCHHHHHHHHHHHHhc--CCcE
Confidence 4579999999988777777889999999999999998776555432 3589999996 7778999999885 4556
Q ss_pred EEEecC
Q 003450 362 VMYVGT 367 (819)
Q Consensus 362 ~~~~g~ 367 (819)
.+..|.
T Consensus 79 ~~l~gr 84 (540)
T 2vl7_A 79 GFLIGK 84 (540)
T ss_dssp EEC---
T ss_pred EEecCC
Confidence 555553
No 97
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=3.6e-14 Score=111.21 Aligned_cols=56 Identities=34% Similarity=0.631 Sum_probs=48.3
Q ss_pred hccCCccchhhhHhhhhc----CCc--ceeeEeeecccccccccccCCCCccccHHHHHHHHHH
Q 003450 185 VAIRPEWTTVDRILACRG----EDD--EKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (819)
Q Consensus 185 ~~~~~~~~~~eril~~~~----~~~--~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~~ 242 (819)
..++|+|.+|||||++|. ..| ..+|||||+||+|++||||+++++ .+..|+.|.++
T Consensus 5 ~~~~pe~~~VErIl~~r~~~~~~~g~~~~eYLVKWkgl~y~e~TWE~~~~l--~~~~I~~f~~r 66 (68)
T 2epb_A 5 SSGNPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDV--DPAKVKEFESL 66 (68)
T ss_dssp CSSCSSCCCCCEEEEEEEEECSSSCCEEEEEEEECTTSCGGGCCEEETTTS--CHHHHHHHHHH
T ss_pred CcCCCCceEEeEEEEEEecccccCCCcceEEEEEEcCCChhcCccccchhc--CHHHHHHHHHh
Confidence 458999999999999873 134 789999999999999999999988 47889999874
No 98
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=6.4e-14 Score=106.10 Aligned_cols=50 Identities=46% Similarity=1.119 Sum_probs=46.4
Q ss_pred cccccccccccCCCCeEecCCCCccccccCcCCCCCCCCCCCcccCccCC
Q 003450 48 DAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 48 ~~~~~~C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
+.++.+|.+|+++++||.||.|+++||+.|+.||+..+|.++|+|+.|..
T Consensus 6 ~~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34667899999999999999999999999999999999999999999964
No 99
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.41 E-value=3.1e-14 Score=109.64 Aligned_cols=50 Identities=46% Similarity=1.105 Sum_probs=46.5
Q ss_pred ccccccccccCCCCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 49 AKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 49 ~~~~~C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
.++..|.+|+++|+||.||.|+++||+.|+.||+..+|.|+|+|+.|...
T Consensus 3 ~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 3 IHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 45678999999999999999999999999999999999999999999753
No 100
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.41 E-value=6.8e-14 Score=109.81 Aligned_cols=51 Identities=41% Similarity=1.135 Sum_probs=47.2
Q ss_pred cccccccccccCCCCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 48 DAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 48 ~~~~~~C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
+.++.+|.+|+++|+||+||.|+++||+.|+.||+..+|.|+|+|+.|...
T Consensus 5 ~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 346788999999999999999999999999999999999999999999853
No 101
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=1.1e-13 Score=106.41 Aligned_cols=50 Identities=38% Similarity=1.043 Sum_probs=46.3
Q ss_pred cccccccccccCCCCeEecCCCCccccccCcCCCCCCCCCCCcccCccCC
Q 003450 48 DAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 48 ~~~~~~C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
..++.+|.+|+++++||.||.|+++||+.|+.||+..+|.|+|+|+.|..
T Consensus 8 ~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34567899999999999999999999999999999999999999999974
No 102
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.35 E-value=4.5e-12 Score=133.81 Aligned_cols=150 Identities=13% Similarity=0.151 Sum_probs=102.4
Q ss_pred CCCchhHHHHHHHHHHhhcC--CCceEEEcCCCCcHHHHHHHHHHH-HhcCCCC-ceEEEecC-cchHHHHHHHHHHc--
Q 003450 284 GSLHPYQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLAS-LFGERIS-PHLVVAPL-STLRNWEREFATWA-- 356 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~--~~~~iLade~GlGKT~~~i~~l~~-l~~~~~~-~~LIv~P~-~ll~qW~~e~~~~~-- 356 (819)
..++|+|..++..+ .. ++++|+..+||+|||+.++..+.. +.....+ .+|||+|+ .|..|+.+.+..+.
T Consensus 113 ~~pt~iQ~~ai~~i----l~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~ 188 (300)
T 3fmo_B 113 NRPSKIQENALPLM----LAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKF 188 (300)
T ss_dssp CSCCHHHHHHHHHH----TSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHH----HcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 36999999999866 34 489999999999999986644444 3333333 79999997 77788888888775
Q ss_pred -CCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc---cccCCccceEE
Q 003450 357 -PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQCM 432 (819)
Q Consensus 357 -p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~---~~l~~~~~~~l 432 (819)
+++.+..+.|...... ......+|+|+|++.+.... ..+..-++.+|
T Consensus 189 ~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~l 239 (300)
T 3fmo_B 189 YPELKLAYAVRGNKLER-----------------------------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 239 (300)
T ss_dssp STTCCEEEESTTCCCCT-----------------------------TCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEE
T ss_pred CCCcEEEEEeCCccHhh-----------------------------hhcCCCCEEEECHHHHHHHHHhcCCCChhhceEE
Confidence 4677777776543210 01245789999999986543 22333467899
Q ss_pred EecccccccCcc---cHHHHHHHhcc-cCcEEEEeCCC
Q 003450 433 IVDEGHRLKNKD---SKLFSSLKQYS-TRHRVLLTGTP 466 (819)
Q Consensus 433 IvDEaH~~kn~~---s~~~~~l~~l~-~~~~llLTgTP 466 (819)
||||||++-... ......+..+. ....+++|||+
T Consensus 240 VlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~ 277 (300)
T 3fmo_B 240 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATF 277 (300)
T ss_dssp EETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCC
T ss_pred EEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccC
Confidence 999999985411 22222233333 34678999997
No 103
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.30 E-value=9.2e-13 Score=97.91 Aligned_cols=46 Identities=39% Similarity=1.057 Sum_probs=42.0
Q ss_pred ccccccCCC---CeEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 53 SCQACGESE---NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 53 ~C~~c~~~~---~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
.|.+|++++ +||.||.|+++||+.|+.||+..+|.|+|+|+.|...
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 589999765 5999999999999999999999999999999999753
No 104
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.26 E-value=2.2e-12 Score=127.24 Aligned_cols=52 Identities=35% Similarity=0.866 Sum_probs=48.2
Q ss_pred ccccccccccccCCCCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 47 IDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 47 ~~~~~~~C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
++.++++|.+|+++|+|++||.|+++||..|+.||+..+|.|+|+|+.|...
T Consensus 3 ~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 3 DDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp CCSSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 4456788999999999999999999999999999999999999999999864
No 105
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1.9e-12 Score=108.52 Aligned_cols=49 Identities=43% Similarity=1.091 Sum_probs=44.9
Q ss_pred ccccccccccCCCC---eEecCCCCccccccCcCCCCCCCCCCCcccCccCC
Q 003450 49 AKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 49 ~~~~~C~~c~~~~~---~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
.++..|.+|+.+++ ||+||.|+++||+.|+.||+..+|.++|+|+.|..
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 45678999998874 99999999999999999999999999999999974
No 106
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.24 E-value=4.3e-12 Score=122.92 Aligned_cols=51 Identities=33% Similarity=0.860 Sum_probs=47.4
Q ss_pred ccccccccccCCCCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCCC
Q 003450 49 AKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (819)
Q Consensus 49 ~~~~~C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~ 99 (819)
.++++|.+|+++|+|++||.|+++||..|+.||+..+|.|+|+|+.|....
T Consensus 2 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 2 PNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 356789999999999999999999999999999999999999999998643
No 107
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.23 E-value=9.5e-13 Score=109.45 Aligned_cols=52 Identities=25% Similarity=0.746 Sum_probs=45.0
Q ss_pred cccccccccCC-----CCeEecCCCCccccccCcCCCCCC----CCCCCcccCccCCCCcc
Q 003450 50 KDDSCQACGES-----ENLMSCDTCTYAYHAKCLVPPLKA----PPSGSWRCPECVSPLND 101 (819)
Q Consensus 50 ~~~~C~~c~~~-----~~~~~C~~C~~~~H~~c~~p~~~~----~~~~~w~C~~c~~~~~~ 101 (819)
+..+|.+|+.+ +.||+||.|+++||+.|+.||+.. +|.|.|+|+.|......
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 35679999977 569999999999999999999985 89999999999864433
No 108
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=1.4e-11 Score=98.92 Aligned_cols=46 Identities=43% Similarity=1.063 Sum_probs=42.1
Q ss_pred cccccccC---CCCeEecCCCCccccccCcCCCCCCCCCC-CcccCccCC
Q 003450 52 DSCQACGE---SENLMSCDTCTYAYHAKCLVPPLKAPPSG-SWRCPECVS 97 (819)
Q Consensus 52 ~~C~~c~~---~~~~~~C~~C~~~~H~~c~~p~~~~~~~~-~w~C~~c~~ 97 (819)
..|.+|+. ++.||+||.|+++||+.||.|||..+|.| +|+|+.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 37999995 56799999999999999999999999999 999999974
No 109
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.18 E-value=1.1e-11 Score=97.99 Aligned_cols=45 Identities=44% Similarity=1.165 Sum_probs=40.9
Q ss_pred ccccccC---CCCeEecCCCCccccccCcCCCCCCCCCC-CcccCccCC
Q 003450 53 SCQACGE---SENLMSCDTCTYAYHAKCLVPPLKAPPSG-SWRCPECVS 97 (819)
Q Consensus 53 ~C~~c~~---~~~~~~C~~C~~~~H~~c~~p~~~~~~~~-~w~C~~c~~ 97 (819)
.|.+|++ ++.||.||.|+++||+.||.|||..+|.| +|+|+.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 5778885 56699999999999999999999999999 999999985
No 110
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.18 E-value=5.5e-12 Score=99.52 Aligned_cols=51 Identities=27% Similarity=0.797 Sum_probs=44.5
Q ss_pred cccccccccccCC-----CCeEecCCCCccccccCcCCCCCC--C-CCCCcccCccCCC
Q 003450 48 DAKDDSCQACGES-----ENLMSCDTCTYAYHAKCLVPPLKA--P-PSGSWRCPECVSP 98 (819)
Q Consensus 48 ~~~~~~C~~c~~~-----~~~~~C~~C~~~~H~~c~~p~~~~--~-~~~~w~C~~c~~~ 98 (819)
+.++..|.+|+.+ +.||+||.|+++||+.|+.||+.. + |.+.|+|+.|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 3456789999987 679999999999999999999986 3 8999999999753
No 111
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.15 E-value=1.6e-11 Score=118.63 Aligned_cols=48 Identities=27% Similarity=0.897 Sum_probs=45.5
Q ss_pred ccccccccCCCCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 51 ~~~C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
++.|.+|+++|+|++||+|+++||+.|+.||+..+|.|+|+|+.|...
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 467999999999999999999999999999999999999999999865
No 112
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.12 E-value=1.4e-11 Score=97.26 Aligned_cols=48 Identities=33% Similarity=0.868 Sum_probs=42.3
Q ss_pred cccccccccccCCC-----CeEecCCCCccccccCcCCCCCCCCCCCcccCccCC
Q 003450 48 DAKDDSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 48 ~~~~~~C~~c~~~~-----~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
..+...|.+|++++ .||+||.|+++||+.|+.|+. +|.|+|+|+.|..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~--vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS--CCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc--CCCCCcCCccCcC
Confidence 34667899999875 699999999999999999874 8999999999975
No 113
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.11 E-value=1.7e-11 Score=101.60 Aligned_cols=47 Identities=34% Similarity=0.918 Sum_probs=42.1
Q ss_pred cccccccccCCC-----CeEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 50 KDDSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 50 ~~~~C~~c~~~~-----~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
++..|.+|++++ .||+||.|+++||+.|+.|++ +|.|+|+|+.|...
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHHH
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccCc
Confidence 457899999887 699999999999999999885 89999999999853
No 114
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.11 E-value=3.8e-11 Score=96.19 Aligned_cols=45 Identities=44% Similarity=1.156 Sum_probs=40.1
Q ss_pred ccccccCCC---CeEecCCCCccccccCcCCCCCCCCCCC-cccCccCC
Q 003450 53 SCQACGESE---NLMSCDTCTYAYHAKCLVPPLKAPPSGS-WRCPECVS 97 (819)
Q Consensus 53 ~C~~c~~~~---~~~~C~~C~~~~H~~c~~p~~~~~~~~~-w~C~~c~~ 97 (819)
.|.+|++.+ .||+||.|+++||++|+.|||..+|.|+ |+|+.|..
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 577787664 4999999999999999999999999999 99999975
No 115
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=99.02 E-value=1.3e-10 Score=99.30 Aligned_cols=65 Identities=35% Similarity=0.779 Sum_probs=50.7
Q ss_pred ccccccccccccCCCCeEecC--CCCccccccCcCCCCCCCCCCCcccCccCCCCcccccccccccccC
Q 003450 47 IDAKDDSCQACGESENLMSCD--TCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPT 113 (819)
Q Consensus 47 ~~~~~~~C~~c~~~~~~~~C~--~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~~~~~~il~~r~~p~ 113 (819)
...++++|.+|+++|+||.|| .|+++||+.|+. |..+|.|+|+||.|..........+...+=|.
T Consensus 11 ~~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k~~~~~C~~Cp~ 77 (107)
T 4gne_A 11 KQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSSAAVSFCEFCPH 77 (107)
T ss_dssp CCSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCSBCCEECSSSSC
T ss_pred cCCCCCCCCcCCCCCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCCCCCcCcCCCCc
Confidence 345678899999999999999 899999999994 99999999999999865433222233444443
No 116
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=99.01 E-value=1.2e-10 Score=112.60 Aligned_cols=47 Identities=43% Similarity=1.073 Sum_probs=39.0
Q ss_pred ccccccccC---CCCeEecCCCCccccccCcCCCCCCCCCC-CcccCccCC
Q 003450 51 DDSCQACGE---SENLMSCDTCTYAYHAKCLVPPLKAPPSG-SWRCPECVS 97 (819)
Q Consensus 51 ~~~C~~c~~---~~~~~~C~~C~~~~H~~c~~p~~~~~~~~-~w~C~~c~~ 97 (819)
...|.+|++ ++.||+||.|+++||+.|+.|||..+|.| +|+|+.|..
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 347999997 46699999999999999999999999999 999999975
No 117
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.01 E-value=1e-09 Score=126.91 Aligned_cols=85 Identities=25% Similarity=0.282 Sum_probs=66.3
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHc--CCCeE
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQMNV 361 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~--p~~~v 361 (819)
++||+|.+.+..+......++++++..+||+|||+..+..+.........+++|++|+ ++..|+.+++.++. ..+++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~ 82 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRA 82 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHhhccCeEE
Confidence 5799999999888888889999999999999999987765554433333589999997 77789999988765 36777
Q ss_pred EEEecChh
Q 003450 362 VMYVGTSQ 369 (819)
Q Consensus 362 ~~~~g~~~ 369 (819)
+++.|..+
T Consensus 83 ~~l~gr~~ 90 (620)
T 4a15_A 83 IPMQGRVN 90 (620)
T ss_dssp EECCCHHH
T ss_pred EEEECCCc
Confidence 77777543
No 118
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.97 E-value=3.5e-10 Score=99.24 Aligned_cols=48 Identities=33% Similarity=0.958 Sum_probs=43.0
Q ss_pred cccccccccCCC----CeEecCCCCccccccCcCCCCCCCCCCCcccCccCC
Q 003450 50 KDDSCQACGESE----NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 50 ~~~~C~~c~~~~----~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
+..+|.+|+.++ .||.||.|+++||+.|+.||+..+|.|+|+|+.|..
T Consensus 60 ~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 60 ECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred cCCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 455788888754 699999999999999999999999999999999974
No 119
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.94 E-value=1.4e-10 Score=103.95 Aligned_cols=51 Identities=33% Similarity=0.799 Sum_probs=46.3
Q ss_pred ccccccccccccCCCCeEecCCCCccccccCcCCCCCC-------CCCCCcccCccCC
Q 003450 47 IDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKA-------PPSGSWRCPECVS 97 (819)
Q Consensus 47 ~~~~~~~C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~~-------~~~~~w~C~~c~~ 97 (819)
++.++++|.+|+++|+|++||.|+++||..|+.|++.. .|.++|.|+.|..
T Consensus 59 ~Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 59 SDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TTSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 45678899999999999999999999999999999862 5899999999985
No 120
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.93 E-value=1.7e-10 Score=93.40 Aligned_cols=51 Identities=25% Similarity=0.671 Sum_probs=44.1
Q ss_pred cccccccccccCC---CCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 48 DAKDDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 48 ~~~~~~C~~c~~~---~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
+.+..+|.+|+.+ +.||.||.|+.+||..|+.++....|.++|+|+.|...
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 4456789999976 35999999999999999999988888899999999753
No 121
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.93 E-value=1.2e-09 Score=111.05 Aligned_cols=150 Identities=20% Similarity=0.174 Sum_probs=88.4
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHH-HhcCCC---CceEEEecC-cchHHHHHHHHHHcCCC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLAS-LFGERI---SPHLVVAPL-STLRNWEREFATWAPQM 359 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~-l~~~~~---~~~LIv~P~-~ll~qW~~e~~~~~p~~ 359 (819)
.++++|.+++..+ ..++.+++.+++|+|||.+...++.. ....+. ..+++++|. .+..|..+.+......
T Consensus 61 p~~~~q~~~i~~i----~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~- 135 (235)
T 3llm_A 61 PVKKFESEILEAI----SQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGE- 135 (235)
T ss_dssp GGGGGHHHHHHHH----HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTC-
T ss_pred ChHHHHHHHHHHH----hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcc-
Confidence 4789999999877 56789999999999999765554443 332222 278899997 4445666666554421
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEeccccc
Q 003450 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHR 439 (819)
Q Consensus 360 ~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~ 439 (819)
.+....|... ...........+|+|+|++.+...... ...++++||+||||+
T Consensus 136 ~~~~~~g~~~---------------------------~~~~~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~ 187 (235)
T 3llm_A 136 EPGKSCGYSV---------------------------RFESILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHE 187 (235)
T ss_dssp CTTSSEEEEE---------------------------TTEEECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTS
T ss_pred ccCceEEEee---------------------------chhhccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCcc
Confidence 1000000000 000011114578999999887654322 234678999999998
Q ss_pred c-cCccc--HHHHHH-HhcccCcEEEEeCCCC
Q 003450 440 L-KNKDS--KLFSSL-KQYSTRHRVLLTGTPL 467 (819)
Q Consensus 440 ~-kn~~s--~~~~~l-~~l~~~~~llLTgTP~ 467 (819)
. -.... ...+.+ ........+++|||+-
T Consensus 188 ~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~ 219 (235)
T 3llm_A 188 RDINTDFLLVVLRDVVQAYPEVRIVLMSATID 219 (235)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTSEEEEEECSSC
T ss_pred CCcchHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 4 11111 122222 2234456899999973
No 122
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.92 E-value=4e-10 Score=99.13 Aligned_cols=48 Identities=46% Similarity=1.102 Sum_probs=42.7
Q ss_pred cccccccccCC---CCeEecCCCCccccccCcCCCCCCCCCCCcccCccCC
Q 003450 50 KDDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 50 ~~~~C~~c~~~---~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
+...|.+|++. +.||.||.|+++||+.|+.||+..+|.|+|+|+.|..
T Consensus 57 ~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 57 ECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp GGCCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccc
Confidence 34568888874 5699999999999999999999999999999999975
No 123
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.89 E-value=4.5e-09 Score=120.59 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=65.8
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcC--CCe
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--QMN 360 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p--~~~ 360 (819)
.++||+|.+.+..+...+..++.+++..+||+|||+.++..+.. ...+++|++|+ .+..|+.+++..+.. +++
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~----~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~ 77 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE----VKPKVLFVVRTHNEFYPIYRDLTKIREKRNIT 77 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH----HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh----CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCcc
Confidence 47899999999888777888999999999999999988766554 23589999996 777899999988742 567
Q ss_pred EEEEecCh
Q 003450 361 VVMYVGTS 368 (819)
Q Consensus 361 v~~~~g~~ 368 (819)
+.++.|..
T Consensus 78 ~~~l~gr~ 85 (551)
T 3crv_A 78 FSFLVGKP 85 (551)
T ss_dssp EEECCCHH
T ss_pred EEEEcccc
Confidence 77776643
No 124
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=98.87 E-value=8e-10 Score=89.49 Aligned_cols=55 Identities=27% Similarity=0.470 Sum_probs=48.1
Q ss_pred ccchhhhHhhhhc-CCcceeeEeeecccccccccccCCCCccccHHHHHHHHHHhh
Q 003450 190 EWTTVDRILACRG-EDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQS 244 (819)
Q Consensus 190 ~~~~~eril~~~~-~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~~~~ 244 (819)
+..+|||||++|. ..+..+|||||+|+++.++|||+.+++..++..+++|.....
T Consensus 12 ~~y~VE~Il~~r~~~~g~~~YlVKWkGy~~~~~TWEp~~~l~~~~~li~~f~~~~~ 67 (78)
T 2dnt_A 12 ELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHT 67 (78)
T ss_dssp CSCCCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEETTTCTTCHHHHHHHHHHHS
T ss_pred ceEEEEEEEEEEEcCCCcEEEEEEECCCCccCCceecHHHHHhHHHHHHHHHhhhh
Confidence 3469999999986 567899999999999999999999998778899999987543
No 125
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=98.85 E-value=4.5e-10 Score=89.67 Aligned_cols=53 Identities=23% Similarity=0.395 Sum_probs=46.6
Q ss_pred ccchhhhHhhhhc-CCcceeeEeeecccccccccccCCCCccccHHHHHHHHHH
Q 003450 190 EWTTVDRILACRG-EDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (819)
Q Consensus 190 ~~~~~eril~~~~-~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~~ 242 (819)
+-.+|||||++|. .+|..+|||||+|++++++|||+.+++..++..++.|.+.
T Consensus 20 e~yeVE~Il~~r~~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~~li~~f~~~ 73 (75)
T 2rsn_A 20 DVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKWKKR 73 (75)
T ss_dssp GCEEEEEEEEEEECSSSCEEEEEEEESSCGGGCEEEEGGGGTTTHHHHHHHHHH
T ss_pred ceEEEEEEEEEEEcCCCcEEEEEEECCCCCcCCeeecHHHccChHHHHHHHHHh
Confidence 3469999999985 4678999999999999999999999988788899999864
No 126
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=98.84 E-value=3.4e-10 Score=88.36 Aligned_cols=52 Identities=27% Similarity=0.386 Sum_probs=46.2
Q ss_pred ccchhhhHhhhhcCCcceeeEeeecccccccccccCCCCccccHHHHHHHHHH
Q 003450 190 EWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (819)
Q Consensus 190 ~~~~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~~ 242 (819)
+..+||+||+.|...+..+|||||+|++++++|||+.+++ .++..+++|.+.
T Consensus 15 ~ey~VEkIld~R~~~g~~eYlVKWkGy~~~~~TWEp~enL-~c~~lI~~F~~~ 66 (69)
T 1q3l_A 15 EEYAVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNL-DCQDLIQQYEAS 66 (69)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE-ECHHHHHHHHHH
T ss_pred CcEEEEEEEEEEEECCeEEEEEEEcCCCcccCCccchHHC-CCHHHHHHHHHH
Confidence 3469999999998888999999999999999999999998 578899999764
No 127
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=98.84 E-value=3.1e-10 Score=85.16 Aligned_cols=51 Identities=29% Similarity=0.500 Sum_probs=44.6
Q ss_pred chhhhHhhhhcCCcceeeEeeecccccccccccCCCCccccHHHHHHHHHHh
Q 003450 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQ 243 (819)
Q Consensus 192 ~~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~~~ 243 (819)
.+||+||+.|...+..+|||||+|.+++++|||+.+++ .++..+++|.+.+
T Consensus 3 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl-~~~~li~~f~~~q 53 (55)
T 3f2u_A 3 YVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQ 53 (55)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGC-CCHHHHHHHHC--
T ss_pred EEEEEEEEEEEeCCeEEEEEEEEeCCCccCCeeEHHHC-CCHHHHHHHHHHc
Confidence 37899999998888999999999999999999999998 5788999997643
No 128
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.81 E-value=1.3e-09 Score=95.73 Aligned_cols=49 Identities=37% Similarity=0.941 Sum_probs=43.9
Q ss_pred cccccccccCCCC---eEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 50 KDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 50 ~~~~C~~c~~~~~---~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
+..+|.+|+++++ ||.||.|+++||+.|+.||+..+|.++|+|+.|..-
T Consensus 53 ~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 53 ECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp TTCCCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cCCcccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 3457889998775 999999999999999999999999999999999753
No 129
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=98.79 E-value=1.1e-09 Score=84.50 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=44.9
Q ss_pred hhhhHhhhhcCCcceeeEeeecccccccccccCCCCccccHHHHHHHHHHh
Q 003450 193 TVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQ 243 (819)
Q Consensus 193 ~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~~~ 243 (819)
+||+||+.+...+..+|||||+|++++++|||+++++. ++..+++|....
T Consensus 2 EVE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~-c~~li~~f~~~~ 51 (64)
T 3mts_A 2 EVEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLK-CVRILKQFHKDL 51 (64)
T ss_dssp CEEEEEEEEECSSCEEEEEEETTSCGGGCEEEEGGGCC-CHHHHHHHHHHH
T ss_pred CceEEEEEEEeCCeEEEEEEEecCCCcCCcEeEHHHCC-CHHHHHHHHHHH
Confidence 68999999988899999999999999999999999985 788899987643
No 130
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.77 E-value=4.7e-09 Score=82.90 Aligned_cols=46 Identities=30% Similarity=0.920 Sum_probs=39.8
Q ss_pred cccccccccC--CCCeEecCC--CC-ccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 50 KDDSCQACGE--SENLMSCDT--CT-YAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 50 ~~~~C~~c~~--~~~~~~C~~--C~-~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
+..+| +|++ .|.||.||. |+ .+||..|+ .|...|.+.|+||.|...
T Consensus 15 ~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cv--gl~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTT--TCSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCCCCEeEeeCCCCCCccEecccC--CcCcCCCCCEECCCCCcc
Confidence 45789 7997 577999999 87 69999999 688999999999999864
No 131
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=98.76 E-value=2.1e-09 Score=85.08 Aligned_cols=53 Identities=15% Similarity=0.298 Sum_probs=46.8
Q ss_pred chhhhHhhhhcCC-ccee-eEeeecccccccccccCCCCccccHHHHHHHHHHhh
Q 003450 192 TTVDRILACRGED-DEKE-YLVKYKELSYDECYWEYESDISAFQPEIERFIKIQS 244 (819)
Q Consensus 192 ~~~eril~~~~~~-~~~~-~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~~~~ 244 (819)
.+||+||++|... +..+ |||||+|.+++++|||+.+++..++..++.|.....
T Consensus 9 y~VE~Il~~r~~~~g~~~~YlVKWkGy~~~~~TWEp~enL~~~~~li~~f~~~~~ 63 (70)
T 1g6z_A 9 YEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEWKRRKR 63 (70)
T ss_dssp SCCCSCSEEECCTTSSCCEEEECCTTTTSSCCEEECGGGGSSCHHHHHHHHHHHT
T ss_pred EEEEEEEEEEEcCCCcEEEEEEEECCCCCCCCceecHHHHhhhHHHHHHHHHhcc
Confidence 3899999999766 7788 999999999999999999998788999999987543
No 132
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=98.75 E-value=7.8e-10 Score=85.17 Aligned_cols=54 Identities=24% Similarity=0.367 Sum_probs=48.2
Q ss_pred chhhhHhhhhcCCcceeeEeeecccccccccccCCCCccccHHHHHHHHHHhhh
Q 003450 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQSR 245 (819)
Q Consensus 192 ~~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~~~~~ 245 (819)
.+||+||+.|...+..+|||||+|.+++++|||+.+++..++..+++|.+....
T Consensus 5 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~~li~~f~~~~~~ 58 (62)
T 3lwe_A 5 FEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKIAE 58 (62)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEHHHHTTCHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEEcCCeEEEEEEEeCCCCcCCCeeeHhHhhccHHHHHHHHHhhHh
Confidence 589999999988889999999999999999999999887788999999875543
No 133
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.75 E-value=1.4e-08 Score=83.70 Aligned_cols=47 Identities=30% Similarity=0.898 Sum_probs=40.3
Q ss_pred ccccccccccC--CCCeEecCC--CC-ccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 49 AKDDSCQACGE--SENLMSCDT--CT-YAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 49 ~~~~~C~~c~~--~~~~~~C~~--C~-~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
.+..+| +|++ .|.||.||. |+ .+||..|+ .|...|.+.|+|+.|...
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CV--gl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTT--TCSSCCCSSCCCTTTCCC
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccC--CcCcCCCCCEECcCccCc
Confidence 455788 8997 567999999 77 69999999 688889999999999864
No 134
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=98.74 E-value=1.6e-09 Score=83.98 Aligned_cols=49 Identities=29% Similarity=0.371 Sum_probs=44.1
Q ss_pred chhhhHhhhhcCCcceeeEeeecccccccccccCCCCccccHHHHHHHHH
Q 003450 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (819)
Q Consensus 192 ~~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~ 241 (819)
.+|||||++|...+..+|||||+|+++.++|||+.+++.. ...+++|..
T Consensus 11 y~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~l~~-~~li~~f~~ 59 (64)
T 2dnv_A 11 FAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILD-ARLLAAFES 59 (64)
T ss_dssp CCCCCEEEEEESSSSEEEEECCSSCCCSSCCEEETTTCCC-HHHHHHHHC
T ss_pred EEEEEEEEEEEeCCcEEEEEEECCCCcccCCccCHhHCCC-HHHHHHHHH
Confidence 4999999999888899999999999999999999998876 578888865
No 135
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=98.73 E-value=8.8e-10 Score=83.92 Aligned_cols=50 Identities=30% Similarity=0.490 Sum_probs=44.7
Q ss_pred chhhhHhhhhcCCcceeeEeeecccccccccccCCCCccccHHHHHHHHHH
Q 003450 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (819)
Q Consensus 192 ~~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~~ 242 (819)
.+||+||+.|...+..+|||||+|.+++++|||+.+++ .++..+.+|.+.
T Consensus 4 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl-~~~~li~~f~~~ 53 (59)
T 3fdt_A 4 YVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKK 53 (59)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE-ECHHHHHHHHC-
T ss_pred EEEEEEEEEEEeCCeEEEEEEEeCCCcccCCccchhHC-CCHHHHHHHHHh
Confidence 47999999998888999999999999999999999998 578899999764
No 136
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.73 E-value=2.8e-09 Score=80.89 Aligned_cols=46 Identities=33% Similarity=0.951 Sum_probs=39.4
Q ss_pred ccccccccccC--CCCeEecCC--CC-ccccccCcCCCCCCCCCCCcccCccCC
Q 003450 49 AKDDSCQACGE--SENLMSCDT--CT-YAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 49 ~~~~~C~~c~~--~~~~~~C~~--C~-~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
.+..+| +|++ .|.|+.||. |+ .+||..|+ .+...|.|.|+||.|..
T Consensus 7 ~e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cv--gl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACV--DLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGG--TCSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccC--CcccCCCCCEECcCccC
Confidence 455778 8997 677999999 77 69999999 68899999999999975
No 137
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=98.73 E-value=1.3e-09 Score=81.52 Aligned_cols=49 Identities=29% Similarity=0.378 Sum_probs=44.2
Q ss_pred chhhhHhhhhcCCcceeeEeeecccccccccccCCCCccccHHHHHHHHH
Q 003450 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (819)
Q Consensus 192 ~~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~ 241 (819)
.+||+||+.|...|..+|||||+|.+++++|||+.+++.. +..++.|.+
T Consensus 4 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~-~~li~~f~~ 52 (54)
T 3i91_A 4 FAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILD-ARLLAAFEE 52 (54)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBCC-HHHHHHHHH
T ss_pred EEEEEEEEEEEeCCcEEEEEEEeCCCcccCcccchhHCCC-HHHHHHHHh
Confidence 5799999999888899999999999999999999998874 788898875
No 138
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=98.73 E-value=2.2e-09 Score=85.60 Aligned_cols=50 Identities=28% Similarity=0.492 Sum_probs=45.3
Q ss_pred chhhhHhhhhcCCcceeeEeeecccccccccccCCCCccccHHHHHHHHHH
Q 003450 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (819)
Q Consensus 192 ~~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~~ 242 (819)
.+||+||+.|...+..+|||||+|++++++|||+.+++ .++..+++|...
T Consensus 14 y~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nL-~~~~li~~f~~~ 63 (73)
T 1ap0_A 14 YVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQS 63 (73)
T ss_dssp CEEEEEEEEEECSSSEEEEEEEESSSSCCCEEEETTTC-CCHHHHHHHTTT
T ss_pred EEEEEEEEEEEeCCeEEEEEEECCCCCccCcEeeHHHC-CCHHHHHHHHHH
Confidence 49999999998888999999999999999999999998 478889999763
No 139
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.71 E-value=3.3e-09 Score=81.01 Aligned_cols=46 Identities=30% Similarity=0.921 Sum_probs=38.8
Q ss_pred ccccccccccC--CCCeEecCC--CC-ccccccCcCCCCCCCCCCCcccCccCC
Q 003450 49 AKDDSCQACGE--SENLMSCDT--CT-YAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 49 ~~~~~C~~c~~--~~~~~~C~~--C~-~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
.+..+| +|++ .|.||.||. |+ .+||+.|+ .+...|.|.|+||.|..
T Consensus 8 ~e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cv--gl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGG--TCSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcC--CCCcCCCCCEECcCccC
Confidence 345778 7997 567999999 66 79999999 68899999999999974
No 140
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=98.71 E-value=2.7e-09 Score=84.21 Aligned_cols=49 Identities=27% Similarity=0.319 Sum_probs=44.1
Q ss_pred chhhhHhhhhcCCcceeeEeeecccccccccccCCCCccccHHHHHHHHH
Q 003450 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (819)
Q Consensus 192 ~~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~ 241 (819)
.+||+||+.|...+..+|||||+|++.+++|||+.+++.. +..+++|.+
T Consensus 22 yeVEkIld~r~~~g~~~YlVKWkGy~~~~~TWEp~enL~~-~~li~~F~~ 70 (73)
T 2k1b_A 22 FAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILD-PRLVMAYEE 70 (73)
T ss_dssp CCCSEEEEEEEETTEEEEEEECTTCCGGGCCEEETTSCSC-HHHHHHHHT
T ss_pred EEEEEEEEEEEcCCcEEEEEEECCCCcccCeecchHHCCC-HHHHHHHHH
Confidence 4999999999888889999999999999999999998874 788998865
No 141
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.71 E-value=1e-09 Score=96.55 Aligned_cols=52 Identities=33% Similarity=0.776 Sum_probs=45.1
Q ss_pred ccccccccccccCCCCeEecCCCCccccccCcCCCCC-----CC--CCCCcccCccCCC
Q 003450 47 IDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLK-----AP--PSGSWRCPECVSP 98 (819)
Q Consensus 47 ~~~~~~~C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~-----~~--~~~~w~C~~c~~~ 98 (819)
++.++.+|.+|+++|+|++||.|+++||..|+.|++. .+ |.+.|.|+.|...
T Consensus 53 ~Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 53 SDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TTSCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 3456788999999999999999999999999999853 33 7899999999753
No 142
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.68 E-value=5e-09 Score=80.29 Aligned_cols=46 Identities=30% Similarity=0.934 Sum_probs=39.0
Q ss_pred ccccccccccC--CCCeEecCC--CC-ccccccCcCCCCCCCCCCCcccCccCC
Q 003450 49 AKDDSCQACGE--SENLMSCDT--CT-YAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 49 ~~~~~C~~c~~--~~~~~~C~~--C~-~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
++..+| +|++ .|.||.||. |+ .+||..|+ .+...|.+.|+||.|..
T Consensus 9 ~e~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cv--gl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCV--SLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGG--TCSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCCCCCeeeeeCCCCCcccEecccC--CcCcCCCCCEECcCccc
Confidence 345788 8997 577999999 65 99999999 67888999999999975
No 143
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=98.68 E-value=1.5e-09 Score=81.48 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=43.7
Q ss_pred chhhhHhhhhcCCcceeeEeeecccccccccccCCCCccccHHHHHHHHH
Q 003450 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (819)
Q Consensus 192 ~~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~ 241 (819)
..||+||+.|...+..+|||||+|.+++++|||+.+++.. +..++.|..
T Consensus 4 y~VE~Il~~r~~~g~~~YlVKWkgy~~~~~TWEp~~~l~~-~~li~~f~~ 52 (55)
T 1pfb_A 4 YAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILD-RRLIDIYEQ 52 (55)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCCS-THHHHHHHT
T ss_pred EEEEEEEEEEEeCCeEEEEEEEcCCCCccCcEeEHHHCCC-HHHHHHHHH
Confidence 4899999999888889999999999999999999998864 778888865
No 144
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=98.67 E-value=1.7e-09 Score=85.08 Aligned_cols=49 Identities=24% Similarity=0.305 Sum_probs=43.6
Q ss_pred chhhhHhhhhcCCcceeeEeeecccccccccccCCCCccccHHHHHHHHH
Q 003450 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (819)
Q Consensus 192 ~~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~ 241 (819)
.+||+||+.|...+..+|||||+|++++++|||+.+++. ++..+++|..
T Consensus 21 yeVEkIld~r~~~g~~~YlVKWkGy~~~~nTWEP~enL~-~~~lI~~F~~ 69 (72)
T 1pdq_A 21 YAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNIL-DRRLIDIYEQ 69 (72)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCC-STHHHHHHC-
T ss_pred EEEEEEEEEEEeCCcEEEEEEECCCCCccCeecchHHCC-CHHHHHHHHH
Confidence 599999999988889999999999999999999999886 4788998865
No 145
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=98.67 E-value=2.1e-09 Score=80.29 Aligned_cols=49 Identities=31% Similarity=0.386 Sum_probs=43.6
Q ss_pred chhhhHhhhhcCCcceeeEeeecccccccccccCCCCccccHHHHHHHHH
Q 003450 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (819)
Q Consensus 192 ~~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~ 241 (819)
.+||+||+.|...|..+|||||+|.+++++|||+.+++.. +..++.|.+
T Consensus 4 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~-~~li~~f~~ 52 (54)
T 3h91_A 4 FAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILD-PRLLLAFQK 52 (54)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBCS-HHHHHHHHC
T ss_pred eEEEEEEEEEEeCCcEEEEEEEeCCCCcCCCeecHhHCCC-HHHHHHHHh
Confidence 4799999999888899999999999999999999998864 678888864
No 146
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=4e-09 Score=84.34 Aligned_cols=51 Identities=29% Similarity=0.369 Sum_probs=45.2
Q ss_pred chhhhHhhhhcCCcceeeEeeecccccccccccCCCCccccHHHHHHHHHHh
Q 003450 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQ 243 (819)
Q Consensus 192 ~~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~~~ 243 (819)
.+||+||++|...+..+|||||+|+++.++|||+.+++.. ...++.|....
T Consensus 11 y~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~~-~~li~~f~~~~ 61 (74)
T 2d9u_A 11 FAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILD-PRLLLAFQKKE 61 (74)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTSCTTTCEEEEGGGCCC-HHHHHHHHHHH
T ss_pred EEEEEEEEEEEeCCcEEEEEEECCCCCccCccccHHHCCC-HHHHHHHHHhh
Confidence 3999999999888889999999999999999999998865 67899998743
No 147
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.64 E-value=1.8e-08 Score=88.52 Aligned_cols=49 Identities=31% Similarity=0.837 Sum_probs=44.2
Q ss_pred cccccccccccCCCCe---EecCCCCccccccCcCCCCCCCCCCCcccCccC
Q 003450 48 DAKDDSCQACGESENL---MSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECV 96 (819)
Q Consensus 48 ~~~~~~C~~c~~~~~~---~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~ 96 (819)
+.++++|.+|+++|++ |.|+.|++.||..|+.|++..++.+.|+|+.|.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 3567889999998875 999999999999999999888889999999986
No 148
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=98.64 E-value=3e-09 Score=78.87 Aligned_cols=45 Identities=20% Similarity=0.493 Sum_probs=38.5
Q ss_pred hhhhHhhhhcCC-cce-eeEeeecccccccccccCCCCccccHHHHHHHHH
Q 003450 193 TVDRILACRGED-DEK-EYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (819)
Q Consensus 193 ~~eril~~~~~~-~~~-~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~ 241 (819)
+||+||+.|... |.. +|||||+| |+++|||+++++. +..++.|.+
T Consensus 2 ~VE~Ild~r~~~~g~~~~YlVKWkg--y~~~TWEp~~nL~--~~li~~f~~ 48 (54)
T 1x3p_A 2 VAESVIGKRVGDDGKTIEYLVKWTD--MSDATWEPQDNVD--STLVLLYQQ 48 (54)
T ss_dssp CSSCCCCBSSCSSSCCCCBCCCCSS--SSSCSCSTTCCSS--SSSHHHHTS
T ss_pred eEEEEEEEEEcCCCcEEEEEEEECC--CCcCCccchHHCC--HHHHHHHHH
Confidence 689999999765 777 99999998 6999999999875 667888854
No 149
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=98.63 E-value=4e-10 Score=91.32 Aligned_cols=53 Identities=26% Similarity=0.414 Sum_probs=43.3
Q ss_pred CCccchhhhHhhhhc-CCcceeeEeeecccccccccccCCCCccccHHHHHHHH
Q 003450 188 RPEWTTVDRILACRG-EDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFI 240 (819)
Q Consensus 188 ~~~~~~~eril~~~~-~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~ 240 (819)
..+..+||+||+.|. ..|..+|||||+|++++++|||+.+++..++..|++|.
T Consensus 20 ~~e~yeVE~Ild~R~~~~g~~~YlVKWkGy~~~~~TWEp~~nl~~~~~li~~f~ 73 (81)
T 4hae_A 20 SGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFN 73 (81)
T ss_dssp TSCEEEEEEEEEEEECTTSCEEEEEEETTCCGGGCEEEEGGGEEECCCCCCTTC
T ss_pred CCCEEEEEEEEEeEECCCCeEEEEEEECCCCCCCCeEEeHHHhhhhHHHHHHHH
Confidence 345579999999985 46788999999999999999999988765566666664
No 150
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.62 E-value=1.6e-08 Score=83.18 Aligned_cols=47 Identities=28% Similarity=0.767 Sum_probs=39.2
Q ss_pred cccccccccccC--CCCeEecCCCC---ccccccCcCCCCCCCCCCCcccCc-cCC
Q 003450 48 DAKDDSCQACGE--SENLMSCDTCT---YAYHAKCLVPPLKAPPSGSWRCPE-CVS 97 (819)
Q Consensus 48 ~~~~~~C~~c~~--~~~~~~C~~C~---~~~H~~c~~p~~~~~~~~~w~C~~-c~~ 97 (819)
+++..+| +|++ .|.||.||.|+ .+||+.|+ .|...|.+.|+||. |..
T Consensus 23 ~~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CV--gl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 23 NQEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCV--GLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp -CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTS--SCSSCTTSCCCSSHHHHH
T ss_pred CCCCcEE-EeCCCCCCCEEEecCCCCccccCcCccC--CCCcCCCCCccCChhhcc
Confidence 3456788 8996 46799999966 89999999 78889999999999 974
No 151
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=98.62 E-value=8.6e-09 Score=82.46 Aligned_cols=52 Identities=25% Similarity=0.299 Sum_probs=45.9
Q ss_pred chhhhHhhhhcCCcceeeEeeecccccccccccCCCCccccHHHHHHHHHHhh
Q 003450 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQS 244 (819)
Q Consensus 192 ~~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~~~~ 244 (819)
.+||+||+.+...+..+|||||+|++++++|||+.+++.. +..++.|....+
T Consensus 14 y~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~L~~-~~li~~f~~~~~ 65 (74)
T 2kvm_A 14 FAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILD-PRLVMAYEEKEE 65 (74)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEETTTCSC-HHHHHHHHHHHH
T ss_pred EEEEEEEEEEEeCCcEEEEEEEcCCCCccCeEeeHHHCCC-HHHHHHHHHHhh
Confidence 4999999999888899999999999999999999998875 678999987543
No 152
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.59 E-value=2.7e-08 Score=84.52 Aligned_cols=45 Identities=20% Similarity=0.551 Sum_probs=37.3
Q ss_pred cccccCCCCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCCC
Q 003450 54 CQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (819)
Q Consensus 54 C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~ 99 (819)
|..|...|.||.||.|+++||..|+.|++..+|. .|+|+.|....
T Consensus 33 C~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~-~w~C~~C~~~~ 77 (98)
T 2lv9_A 33 CGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPD-TYLCERCQPRN 77 (98)
T ss_dssp TSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCS-SBCCTTTSSSC
T ss_pred CCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCC-CEECCCCcCCC
Confidence 4444456679999999999999999999888874 89999997543
No 153
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=98.54 E-value=1e-08 Score=78.59 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=42.2
Q ss_pred chhhhHhhhhcCCcce-eeEeeecccccccccccCCCCccccHHHHHHHHH
Q 003450 192 TTVDRILACRGEDDEK-EYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (819)
Q Consensus 192 ~~~eril~~~~~~~~~-~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~ 241 (819)
.+||+||+.|...+.. +|||||+|.+..++|||+.+++. +...+.+|.+
T Consensus 8 y~VE~Il~~r~~~g~~~~YlVkWkGy~~~~~TWEp~~nl~-~~~li~~~~~ 57 (61)
T 3g7l_A 8 YEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLF-GAEKVLKKWK 57 (61)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEEEGGGGT-BCHHHHHHHH
T ss_pred EEEEEEEEEEEECCCEEEEEEEEeCCCCcCCceeeHhHCC-CHHHHHHHHH
Confidence 5899999999777777 99999999999999999999885 5667776654
No 154
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=98.52 E-value=3.1e-08 Score=82.47 Aligned_cols=52 Identities=25% Similarity=0.415 Sum_probs=45.4
Q ss_pred chhhhHhhhhc--CCcceeeEeeecccc-cccccccCCCCccccHHHHHHHHHHh
Q 003450 192 TTVDRILACRG--EDDEKEYLVKYKELS-YDECYWEYESDISAFQPEIERFIKIQ 243 (819)
Q Consensus 192 ~~~eril~~~~--~~~~~~~lvKw~~l~-y~~~TWE~~~~~~~~~~~~~~~~~~~ 243 (819)
.+||+||++|. ..+..+|||||+|.+ ..++|||+.+++..++..|+.|.+..
T Consensus 31 y~VE~Il~~r~~~~~g~~~YlVkWkGy~~~~~~TWEP~~nl~~c~~li~~f~~~~ 85 (92)
T 2rso_A 31 YVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLIEAYWNEH 85 (92)
T ss_dssp CCEEEEEEEEECTTSSCEEEEEEETTCCCCTTSEEECGGGGGTSHHHHHHHHHHH
T ss_pred EEEEEEEEEEeecCCCEEEEEEEEccCCCcccCccccHHHHhhHHHHHHHHHHHc
Confidence 48999999984 457899999999998 58899999999988899999998754
No 155
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=98.43 E-value=7.3e-08 Score=82.04 Aligned_cols=75 Identities=27% Similarity=0.511 Sum_probs=46.8
Q ss_pred CcccccccccccccCcC-CC--CCccc----------ccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHH
Q 003450 99 LNDIDKILDCEMRPTVA-GD--SDVSK----------LGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRT 165 (819)
Q Consensus 99 ~~~~~~il~~r~~p~~~-~~--~~~~~----------~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~ 165 (819)
.-.+++|+++|.....+ +. .-+.. ..-......+|||||+|+|+.||||+|++.|.+. ..+++ +
T Consensus 13 ~etie~v~~~r~g~~g~tg~~~~~Y~VE~i~Dp~~ildkR~~~g~~eYlVKWkG~s~~~nTWEp~enL~~~--~~~g~-k 89 (115)
T 2b2y_C 13 FETIERFMDCRIGRKGATGATTTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQ--NVRGM-K 89 (115)
T ss_dssp CCBEEEEEEEEEECTTCCSGGGSHHHHHHHCBTTTTCCTTSSSCEEEEEEEETTSCGGGCEEECHHHHHHH--TCBCT-H
T ss_pred HHHHHHHHHhhcCCCCCCCCCCceEEEeecCCcccccccceeCCcEEEEEEECCCCchhcccCCHHHcCCc--cchHH-H
Confidence 45789999998744333 21 10001 1111233469999999999999999999999763 12233 4
Q ss_pred HHHhHHhhhcc
Q 003450 166 KVNNFHRQMSS 176 (819)
Q Consensus 166 ~~~~f~~~~~~ 176 (819)
++.+|.++...
T Consensus 90 klenY~kk~~e 100 (115)
T 2b2y_C 90 KLDNYKKKDQE 100 (115)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHHHH
Confidence 78999887543
No 156
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.16 E-value=5.1e-07 Score=71.00 Aligned_cols=45 Identities=29% Similarity=0.867 Sum_probs=37.4
Q ss_pred cccccccccC--CCCeEecCCCC---ccccccCcCCCCCCCCCCCcccCccCC
Q 003450 50 KDDSCQACGE--SENLMSCDTCT---YAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 50 ~~~~C~~c~~--~~~~~~C~~C~---~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
+..+|. |++ .|.||.||.|+ ..||..|+ .|...|.+.|+|+.|..
T Consensus 5 ~~~yC~-C~~~~~g~MI~CD~cdC~~~WfH~~Cv--gl~~~p~~~w~Cp~C~~ 54 (70)
T 1x4i_A 5 SSGYCI-CNQVSYGEMVGCDNQDCPIEWFHYGCV--GLTEAPKGKWYCPQCTA 54 (70)
T ss_dssp CCCCST-TSCCCCSSEECCSCTTCSCCCEEHHHH--TCSSCCSSCCCCHHHHH
T ss_pred CCeEEE-cCCCCCCCEeEeCCCCCCccCCccccc--ccCcCCCCCEECCCCCc
Confidence 456785 885 35699999975 79999999 67888999999999974
No 157
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=98.13 E-value=3.3e-07 Score=70.91 Aligned_cols=52 Identities=31% Similarity=0.512 Sum_probs=40.0
Q ss_pred CcccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhhh
Q 003450 99 LNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQM 174 (819)
Q Consensus 99 ~~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~~ 174 (819)
...|++|++.|.+. ...+|||||+|+++.+|||+|++.|.+ + ..++.|.++.
T Consensus 10 ey~VE~Il~~r~~~----------------g~~~YlVKWkGy~~~~~TWEp~~~l~~-----~---~li~~f~~~~ 61 (64)
T 2dnv_A 10 VFAAEALLKRRIRK----------------GRMEYLVKWKGWSQKYSTWEPEENILD-----A---RLLAAFESGP 61 (64)
T ss_dssp CCCCCCEEEEEESS----------------SSEEEEECCSSCCCSSCCEEETTTCCC-----H---HHHHHHHCCT
T ss_pred eEEEEEEEEEEEeC----------------CcEEEEEEECCCCcccCCccCHhHCCC-----H---HHHHHHHHHc
Confidence 35689999987531 127899999999999999999998853 2 3677887654
No 158
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=98.12 E-value=5.9e-07 Score=70.26 Aligned_cols=48 Identities=31% Similarity=0.783 Sum_probs=40.9
Q ss_pred ccccccccc--CCCCeEecCCCCccccccCcCCC------------CCCCCCCCcccCccCC
Q 003450 50 KDDSCQACG--ESENLMSCDTCTYAYHAKCLVPP------------LKAPPSGSWRCPECVS 97 (819)
Q Consensus 50 ~~~~C~~c~--~~~~~~~C~~C~~~~H~~c~~p~------------~~~~~~~~w~C~~c~~ 97 (819)
+++.|.||. ..+.++.|..|.+.||..||.++ +...+...|.|+.|.+
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 567899999 66779999999999999999986 3455678899999964
No 159
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=98.11 E-value=1.4e-06 Score=68.12 Aligned_cols=47 Identities=19% Similarity=0.477 Sum_probs=37.2
Q ss_pred ccccccccccCCC---CeEecCCCCccccccCcCCCCCCCCCCCcccCccCC
Q 003450 49 AKDDSCQACGESE---NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 49 ~~~~~C~~c~~~~---~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
.+..+| +|+... .||.||.|...||..|+.......| +.|+|+.|..
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCC-SSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCC-CcEECCCCCC
Confidence 345778 898653 3999999999999999966554444 7899999975
No 160
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=98.09 E-value=3.2e-07 Score=70.66 Aligned_cols=39 Identities=26% Similarity=0.564 Sum_probs=31.8
Q ss_pred cccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHH
Q 003450 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFL 154 (819)
Q Consensus 100 ~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~ 154 (819)
+.|++|++.|... ...+|||||+|+++.+|||+|++.|.
T Consensus 1 ~EVE~Il~~r~~~----------------g~~~YlVKWkGy~~~~~TWEp~~nl~ 39 (64)
T 3mts_A 1 GEVEYLCDYKKIR----------------EQEYYLVKWRGYPDSESTWEPRQNLK 39 (64)
T ss_dssp CCEEEEEEEEECS----------------SCEEEEEEETTSCGGGCEEEEGGGCC
T ss_pred CCceEEEEEEEeC----------------CeEEEEEEEecCCCcCCcEeEHHHCC
Confidence 3578888877531 12799999999999999999999885
No 161
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.06 E-value=1e-06 Score=68.86 Aligned_cols=55 Identities=35% Similarity=0.623 Sum_probs=38.5
Q ss_pred cccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 003450 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (819)
Q Consensus 100 ~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~ 173 (819)
..|++|++.|...... . + ....+|||||+|++|.+|||+|++.|. + ..++.|.+.
T Consensus 12 ~~VErIl~~r~~~~~~-~------g---~~~~eYLVKWkgl~y~e~TWE~~~~l~------~---~~I~~f~~r 66 (68)
T 2epb_A 12 VEVDRILEVAHTKDAE-T------G---EEVTHYLVKWCSLPYEESTWELEEDVD------P---AKVKEFESL 66 (68)
T ss_dssp CCCCEEEEEEEEECSS-S------C---CEEEEEEEECTTSCGGGCCEEETTTSC------H---HHHHHHHHH
T ss_pred eEEeEEEEEEeccccc-C------C---CcceEEEEEEcCCChhcCccccchhcC------H---HHHHHHHHh
Confidence 3689999987532100 0 0 013799999999999999999998872 1 367777654
No 162
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=6.1e-07 Score=71.61 Aligned_cols=52 Identities=33% Similarity=0.601 Sum_probs=40.4
Q ss_pred CcccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhhh
Q 003450 99 LNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQM 174 (819)
Q Consensus 99 ~~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~~ 174 (819)
...|++|++.|... ...+|||||+|+++.||||+|++.|.+ + ..+..|.++.
T Consensus 10 ey~VE~Il~~r~~~----------------g~~~YlVKWkGy~~~~~TWEp~~nl~~-----~---~li~~f~~~~ 61 (74)
T 2d9u_A 10 VFAAECILSKRLRK----------------GKLEYLVKWRGWSSKHNSWEPEENILD-----P---RLLLAFQKKE 61 (74)
T ss_dssp CCCEEEEEEEEEET----------------TEEEEEEEETTSCTTTCEEEEGGGCCC-----H---HHHHHHHHHH
T ss_pred cEEEEEEEEEEEeC----------------CcEEEEEEECCCCCccCccccHHHCCC-----H---HHHHHHHHhh
Confidence 35789999988642 137999999999999999999998853 2 3677887653
No 163
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.04 E-value=6e-07 Score=78.75 Aligned_cols=45 Identities=36% Similarity=0.753 Sum_probs=37.0
Q ss_pred cccccccCC----------CCeEecCCCCccccccCcCCCCC---CCCCCCcccCccC
Q 003450 52 DSCQACGES----------ENLMSCDTCTYAYHAKCLVPPLK---APPSGSWRCPECV 96 (819)
Q Consensus 52 ~~C~~c~~~----------~~~~~C~~C~~~~H~~c~~p~~~---~~~~~~w~C~~c~ 96 (819)
++|.+|..+ ++||.|+.|++.||..|+.++.. .++.+.|+|+.|.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 468888754 36999999999999999987642 4678999999995
No 164
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=98.03 E-value=3.8e-07 Score=67.98 Aligned_cols=50 Identities=34% Similarity=0.626 Sum_probs=37.3
Q ss_pred cccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 003450 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (819)
Q Consensus 100 ~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~ 173 (819)
..|++|++.|... ...+|||||+|+++.+|||+|++.|.+ | ..+..|.++
T Consensus 4 y~VE~Il~~r~~~----------------g~~~YlVkWkGy~~~~~TWEp~~nl~~-----~---~li~~f~~r 53 (54)
T 3h91_A 4 FAAECILSKRLRK----------------GKLEYLVKWRGWSSKHNSWEPEENILD-----P---RLLLAFQKK 53 (54)
T ss_dssp EEEEEEEEEEEET----------------TEEEEEEEETTSCGGGCEEEEGGGBCS-----H---HHHHHHHC-
T ss_pred eEEEEEEEEEEeC----------------CcEEEEEEEeCCCCcCCCeecHhHCCC-----H---HHHHHHHhc
Confidence 3578888876531 137999999999999999999999853 2 356777643
No 165
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=98.02 E-value=4.1e-07 Score=68.09 Aligned_cols=50 Identities=32% Similarity=0.561 Sum_probs=37.4
Q ss_pred cccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 003450 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (819)
Q Consensus 100 ~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~ 173 (819)
..|++|++.|... ...+|||||+|+++.++||+|++.|.+ | ..++.|.++
T Consensus 3 y~VE~Il~~r~~~----------------g~~~YlVkWkGy~~~~~TWEp~~nl~~-----~---~li~~f~~~ 52 (55)
T 3f2u_A 3 YVVEKVLDRRVVK----------------GKVEYLLKWKGFSDEDNTWEPEENLDC-----P---DLIAEFLQS 52 (55)
T ss_dssp CCEEEEEEEEEET----------------TEEEEEEEETTSCGGGCEEEEGGGCCC-----H---HHHHHHHC-
T ss_pred EEEEEEEEEEEeC----------------CeEEEEEEEEeCCCccCCeeEHHHCCC-----H---HHHHHHHHH
Confidence 3578898887532 137999999999999999999999832 2 367777654
No 166
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=98.01 E-value=4.3e-07 Score=70.77 Aligned_cols=51 Identities=25% Similarity=0.513 Sum_probs=39.2
Q ss_pred CcccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 003450 99 LNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (819)
Q Consensus 99 ~~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~ 173 (819)
...|++|++.|... ...+|||||+|+++.+|||+|++.|.+ + ..++.|.++
T Consensus 16 ey~VEkIld~R~~~----------------g~~eYlVKWkGy~~~~~TWEp~enL~c-----~---~lI~~F~~~ 66 (69)
T 1q3l_A 16 EYAVEKIIDRRVRK----------------GMVEYYLKWKGYPETENTWEPENNLDC-----Q---DLIQQYEAS 66 (69)
T ss_dssp CEEEEEEEEEEEET----------------TEEEEEEEETTSCGGGCEEEEGGGEEC-----H---HHHHHHHHH
T ss_pred cEEEEEEEEEEEEC----------------CeEEEEEEEcCCCcccCCccchHHCCC-----H---HHHHHHHHH
Confidence 35689999987632 127999999999999999999999843 2 367777653
No 167
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=98.00 E-value=4.7e-07 Score=67.50 Aligned_cols=49 Identities=33% Similarity=0.558 Sum_probs=36.9
Q ss_pred cccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHh
Q 003450 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHR 172 (819)
Q Consensus 100 ~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~ 172 (819)
..|++|++.|... ...+|||||+|+++.+|||+|++.|.+ | ..+..|..
T Consensus 4 y~VE~Il~~r~~~----------------g~~~YlVkWkGy~~~~~TWEp~~nl~~-----~---~li~~f~~ 52 (54)
T 3i91_A 4 FAAEALLKRRIRK----------------GRMEYLVKWKGWSQKYSTWEPEENILD-----A---RLLAAFEE 52 (54)
T ss_dssp EEEEEEEEEEEET----------------TEEEEEEEETTSCGGGCEEEEGGGBCC-----H---HHHHHHHH
T ss_pred EEEEEEEEEEEeC----------------CcEEEEEEEeCCCcccCcccchhHCCC-----H---HHHHHHHh
Confidence 3578888876531 127999999999999999999999853 2 35667754
No 168
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=98.00 E-value=6.1e-07 Score=70.80 Aligned_cols=50 Identities=30% Similarity=0.504 Sum_probs=39.0
Q ss_pred cccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 003450 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (819)
Q Consensus 100 ~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~ 173 (819)
..|++|++.|... ...+|||||+|++..+|||+|++.|.+. ..++.|.++
T Consensus 22 yeVEkIld~r~~~----------------g~~~YlVKWkGy~~~~~TWEp~enL~~~--------~li~~F~~~ 71 (73)
T 2k1b_A 22 FAVESIRKKRVRK----------------GKVEYLVKWKGWPPKYSTWEPEEHILDP--------RLVMAYEEK 71 (73)
T ss_dssp CCCSEEEEEEEET----------------TEEEEEEECTTCCGGGCCEEETTSCSCH--------HHHHHHHTS
T ss_pred EEEEEEEEEEEcC----------------CcEEEEEEECCCCcccCeecchHHCCCH--------HHHHHHHHh
Confidence 4789999987532 1269999999999999999999988532 367778654
No 169
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=97.99 E-value=4.5e-07 Score=67.88 Aligned_cols=50 Identities=28% Similarity=0.508 Sum_probs=37.8
Q ss_pred cccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 003450 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (819)
Q Consensus 100 ~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~ 173 (819)
..|++|++.|... ...+|||||+|+++.+|||+|++.|.+ + ..++.|.++
T Consensus 4 y~VE~Il~~r~~~----------------g~~~YlVKWkgy~~~~~TWEp~~~l~~-----~---~li~~f~~~ 53 (55)
T 1pfb_A 4 YAAEKIIQKRVKK----------------GVVEYRVKWKGWNQRYNTWEPEVNILD-----R---RLIDIYEQT 53 (55)
T ss_dssp EEEEEEEEEEEET----------------TEEEEEEEETTSCGGGCEEEEGGGCCS-----T---HHHHHHHTS
T ss_pred EEEEEEEEEEEeC----------------CeEEEEEEEcCCCCccCcEeEHHHCCC-----H---HHHHHHHHh
Confidence 3578898887531 127999999999999999999998853 2 356777643
No 170
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.99 E-value=2.6e-06 Score=66.31 Aligned_cols=50 Identities=32% Similarity=0.784 Sum_probs=37.8
Q ss_pred ccccccccccCC----CCeEecCCCCccccccCcCCCCCCCC-CCCcccCccCCC
Q 003450 49 AKDDSCQACGES----ENLMSCDTCTYAYHAKCLVPPLKAPP-SGSWRCPECVSP 98 (819)
Q Consensus 49 ~~~~~C~~c~~~----~~~~~C~~C~~~~H~~c~~p~~~~~~-~~~w~C~~c~~~ 98 (819)
.+..+|.+|++. +.+|.||.|...||..|+........ .+.|+|+.|...
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 355779999865 34999999999999999944333222 378999999864
No 171
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=97.97 E-value=9.7e-07 Score=70.36 Aligned_cols=52 Identities=21% Similarity=0.620 Sum_probs=39.0
Q ss_pred cccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 003450 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (819)
Q Consensus 100 ~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~ 173 (819)
..|++|++.|.... ...+|||||+|+++.+|||+|++.|... ...++.|.++
T Consensus 22 yeVE~Il~~r~~~~---------------g~~~YlVkWkGy~~~~~TWEp~~nl~~~-------~~li~~f~~~ 73 (75)
T 2rsn_A 22 YEVEDILADRVNKN---------------GINEYYIKWAGYDWYDNTWEPEQNLFGA-------EKVLKKWKKR 73 (75)
T ss_dssp EEEEEEEEEEECSS---------------SCEEEEEEEESSCGGGCEEEEGGGGTTT-------HHHHHHHHHH
T ss_pred EEEEEEEEEEEcCC---------------CcEEEEEEECCCCCcCCeeecHHHccCh-------HHHHHHHHHh
Confidence 56899998874221 1268999999999999999999988421 2467788765
No 172
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=97.96 E-value=2.6e-06 Score=67.28 Aligned_cols=53 Identities=17% Similarity=0.423 Sum_probs=39.2
Q ss_pred cccccccccccccCcCCCCCcccccccchhhhh-hhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhhh
Q 003450 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQ-YLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQM 174 (819)
Q Consensus 100 ~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~e-ylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~~ 174 (819)
..|++|++.|.... ...+ |||||+|+++.+|||+|++.|. ..+ ..++.|.++.
T Consensus 9 y~VE~Il~~r~~~~---------------g~~~~YlVKWkGy~~~~~TWEp~enL~----~~~---~li~~f~~~~ 62 (70)
T 1g6z_A 9 YEVERIVDEKLDRN---------------GAVKLYRIRWLNYSSRSDTWEPPENLS----GCS---AVLAEWKRRK 62 (70)
T ss_dssp SCCCSCSEEECCTT---------------SSCCEEEECCTTTTSSCCEEECGGGGS----SCH---HHHHHHHHHH
T ss_pred EEEEEEEEEEEcCC---------------CcEEEEEEEECCCCCCCCceecHHHHh----hhH---HHHHHHHHhc
Confidence 56899999875331 1256 9999999999999999999983 122 3577787654
No 173
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=97.96 E-value=1.4e-06 Score=66.97 Aligned_cols=53 Identities=26% Similarity=0.486 Sum_probs=39.5
Q ss_pred CcccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhhh
Q 003450 99 LNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQM 174 (819)
Q Consensus 99 ~~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~~ 174 (819)
...|++|++.|... ...+|||||+|+++.++||+|++.|.. . ...++.|.++.
T Consensus 4 ~y~VE~Il~~r~~~----------------g~~~YlVkWkGy~~~~~TWEp~~nl~~----~---~~li~~f~~~~ 56 (62)
T 3lwe_A 4 VFEVEKILDMKTEG----------------GKVLYKVRWKGYTSDDDTWEPEIHLED----C---KEVLLEFRKKI 56 (62)
T ss_dssp SCCEEEEEEEEEET----------------TEEEEEEEETTSCGGGCEEEEHHHHTT----C---HHHHHHHHHHH
T ss_pred eEEEEEEEEEEEcC----------------CeEEEEEEEeCCCCcCCCeeeHhHhhc----c---HHHHHHHHHhh
Confidence 35678999887431 137999999999999999999999831 2 23677777654
No 174
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.92 E-value=2.8e-06 Score=67.66 Aligned_cols=48 Identities=21% Similarity=0.588 Sum_probs=36.8
Q ss_pred ccccccccccCC---C-CeEecCCCCccccccCcCCCCCCCCCCCcccCccCC
Q 003450 49 AKDDSCQACGES---E-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 49 ~~~~~C~~c~~~---~-~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
....+| +|+.. | .||.||.|...||..|+...........|+|+.|..
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 345679 69865 3 399999999999999996553333457899999974
No 175
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=97.91 E-value=6.8e-07 Score=70.24 Aligned_cols=49 Identities=29% Similarity=0.518 Sum_probs=37.3
Q ss_pred cccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHh
Q 003450 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHR 172 (819)
Q Consensus 100 ~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~ 172 (819)
..|++|++.|... ...+|||||+|+++.+|||+|++.|.+ + ..++.|.+
T Consensus 21 yeVEkIld~r~~~----------------g~~~YlVKWkGy~~~~nTWEP~enL~~-----~---~lI~~F~~ 69 (72)
T 1pdq_A 21 YAAEKIIQKRVKK----------------GVVEYRVKWKGWNQRYNTWEPEVNILD-----R---RLIDIYEQ 69 (72)
T ss_dssp EEEEEEEEEEEET----------------TEEEEEEEETTSCGGGCEEEEGGGCCS-----T---HHHHHHC-
T ss_pred EEEEEEEEEEEeC----------------CcEEEEEEECCCCCccCeecchHHCCC-----H---HHHHHHHH
Confidence 4689999987532 127899999999999999999998853 2 35667754
No 176
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=97.89 E-value=2.7e-06 Score=64.99 Aligned_cols=52 Identities=21% Similarity=0.397 Sum_probs=38.5
Q ss_pred cccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHh
Q 003450 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHR 172 (819)
Q Consensus 100 ~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~ 172 (819)
..|++|++.|... ....+|||||+|.+|-+|||++++ + ..|.+...++.|+.
T Consensus 12 ~~VeRIi~~r~~~---------------~g~~eYLVKWkgl~y~e~TWE~~~-~-----~~~~~~~~I~~y~~ 63 (64)
T 2ee1_A 12 MMIHRILNHSVDK---------------KGHVHYLIKWRDLPYDQASWESED-V-----EIQDYDLFKQSYWN 63 (64)
T ss_dssp CCCCCCCEEEECT---------------TCCEEEEECCTTSCTTTCEEEETT-C-----CCTTHHHHHHHHHH
T ss_pred EEEEEEEEEEecC---------------CCCEEEEEEEcCCCcccCcccCCc-c-----cCcchHHHHHHHHh
Confidence 3578899887531 113799999999999999999997 3 23556667777753
No 177
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=97.89 E-value=8.5e-07 Score=67.36 Aligned_cols=51 Identities=35% Similarity=0.628 Sum_probs=37.3
Q ss_pred cccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhhh
Q 003450 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQM 174 (819)
Q Consensus 100 ~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~~ 174 (819)
..|++|++.|... ...+|||||+|+++.++||+|++.|.+ | ..+..|.++.
T Consensus 4 y~VE~Il~~r~~~----------------g~~~YlVkWkGy~~~~~TWEp~~nl~~-----~---~li~~f~~~~ 54 (59)
T 3fdt_A 4 YVVEKVLDRRVVK----------------GQVEYLLKWKGFSEEHNTWEPEKNLDC-----P---ELISEFMKKY 54 (59)
T ss_dssp EEEEEEEEEEEET----------------TEEEEEEEETTSCGGGCEEEEGGGEEC-----H---HHHHHHHC--
T ss_pred EEEEEEEEEEEeC----------------CeEEEEEEEeCCCcccCCccchhHCCC-----H---HHHHHHHHhh
Confidence 3578888887531 137999999999999999999998843 2 3677776543
No 178
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=97.89 E-value=1.2e-06 Score=69.91 Aligned_cols=51 Identities=29% Similarity=0.505 Sum_probs=39.3
Q ss_pred CcccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 003450 99 LNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (819)
Q Consensus 99 ~~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~ 173 (819)
...|++|++.|... ...+|||||+|+++.+|||+|++.|.+. ..++.|.++
T Consensus 13 ~y~VE~Il~~r~~~----------------g~~~YlVKWkGy~~~~~TWEp~~~L~~~--------~li~~f~~~ 63 (74)
T 2kvm_A 13 VFAVESIRKKRVRK----------------GKVEYLVKWKGWPPKYSTWEPEEHILDP--------RLVMAYEEK 63 (74)
T ss_dssp CCCEEEEEEEEEET----------------TEEEEEEEETTSCGGGCEEEETTTCSCH--------HHHHHHHHH
T ss_pred cEEEEEEEEEEEeC----------------CcEEEEEEEcCCCCccCeEeeHHHCCCH--------HHHHHHHHH
Confidence 35789999987532 1279999999999999999999988532 367777654
No 179
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=97.89 E-value=1.3e-06 Score=66.76 Aligned_cols=40 Identities=25% Similarity=0.664 Sum_probs=32.3
Q ss_pred cccccccccccccCcCCCCCcccccccchhhh-hhhhhccCCCcccccccChHHHHH
Q 003450 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVK-QYLVKWKGLSYLHCTWVPEKEFLK 155 (819)
Q Consensus 100 ~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~-eylVKw~~~s~~h~~W~~~~~l~~ 155 (819)
..|++|++.|.... .. +|||||+|++..++||+|++.|.+
T Consensus 8 y~VE~Il~~r~~~g----------------~~~~YlVkWkGy~~~~~TWEp~~nl~~ 48 (61)
T 3g7l_A 8 YEVEDILADRVNKN----------------GINEYYIKWAGYDWYDNTWEPEQNLFG 48 (61)
T ss_dssp EEEEEEEEEEECTT----------------SCEEEEEEETTSCGGGCEEEEGGGGTB
T ss_pred EEEEEEEEEEEECC----------------CEEEEEEEEeCCCCcCCceeeHhHCCC
Confidence 46789998875321 14 899999999999999999999854
No 180
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.86 E-value=1.6e-06 Score=66.93 Aligned_cols=45 Identities=22% Similarity=0.702 Sum_probs=36.2
Q ss_pred cccccccccCCC----CeEecC-CCCccccccCcCCCCCC--------CCCCCcccCccC
Q 003450 50 KDDSCQACGESE----NLMSCD-TCTYAYHAKCLVPPLKA--------PPSGSWRCPECV 96 (819)
Q Consensus 50 ~~~~C~~c~~~~----~~~~C~-~C~~~~H~~c~~p~~~~--------~~~~~w~C~~c~ 96 (819)
....|.+|+++. .++.|| .|...||..|+ .++. .|.+.|+|+.|.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv--glt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICT--GMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH--TCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhcc--CCCHHHHHHhhccCCCcEECcCcc
Confidence 345699999762 399999 99999999999 6654 377899999996
No 181
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=97.84 E-value=1.4e-06 Score=69.39 Aligned_cols=53 Identities=30% Similarity=0.506 Sum_probs=40.5
Q ss_pred CcccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhhhc
Q 003450 99 LNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMS 175 (819)
Q Consensus 99 ~~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~~~ 175 (819)
...|++|++.|... ...+|||||+|+++.+|||+|++.|.+ + ..+..|.++..
T Consensus 13 ey~VE~Il~~r~~~----------------g~~~YlVKWkGy~~~~~TWEp~~nL~~-----~---~li~~f~~~~~ 65 (73)
T 1ap0_A 13 EYVVEKVLDRRVVK----------------GKVEYLLKWKGFSDEDNTWEPEENLDC-----P---DLIAEFLQSQK 65 (73)
T ss_dssp CCEEEEEEEEEECS----------------SSEEEEEEEESSSSCCCEEEETTTCCC-----H---HHHHHHTTTTT
T ss_pred eEEEEEEEEEEEeC----------------CeEEEEEEECCCCCccCcEeeHHHCCC-----H---HHHHHHHHHhh
Confidence 35689999987642 127999999999999999999998842 2 36788876543
No 182
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=97.83 E-value=2.8e-06 Score=68.64 Aligned_cols=55 Identities=27% Similarity=0.607 Sum_probs=40.9
Q ss_pred CcccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhhhc
Q 003450 99 LNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMS 175 (819)
Q Consensus 99 ~~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~~~ 175 (819)
...|++|++.|.... ...+|||||+|+++.+|||+|++.|.. . ...++.|.++..
T Consensus 13 ~y~VE~Il~~r~~~~---------------g~~~YlVKWkGy~~~~~TWEp~~~l~~----~---~~li~~f~~~~~ 67 (78)
T 2dnt_A 13 LYEVERIVDKRKNKK---------------GKTEYLVRWKGYDSEDDTWEPEQHLVN----C---EEYIHDFNRRHT 67 (78)
T ss_dssp SCCCCCEEEEEECTT---------------SCEEEEECBTTBCGGGCEEEETTTCTT----C---HHHHHHHHHHHS
T ss_pred eEEEEEEEEEEEcCC---------------CcEEEEEEECCCCccCCceecHHHHHh----H---HHHHHHHHhhhh
Confidence 357899999875221 127999999999999999999998732 1 246788876553
No 183
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.81 E-value=1.5e-06 Score=70.18 Aligned_cols=46 Identities=22% Similarity=0.703 Sum_probs=36.1
Q ss_pred cccccccccCC---CCeEecCCCCccccccCcCCCCCCC-------CCCCcccCccCCC
Q 003450 50 KDDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAP-------PSGSWRCPECVSP 98 (819)
Q Consensus 50 ~~~~C~~c~~~---~~~~~C~~C~~~~H~~c~~p~~~~~-------~~~~w~C~~c~~~ 98 (819)
+..+| +|++. +.||.||.|...||..|+ .+... +...|+|+.|...
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cv--gl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCV--GISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHH--SCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEE--ccchhhhhhccCCCCeEECcCCcCc
Confidence 45678 79875 359999999999999999 55433 2578999999753
No 184
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.77 E-value=5.1e-06 Score=71.26 Aligned_cols=45 Identities=24% Similarity=0.784 Sum_probs=37.3
Q ss_pred cccccccCC----CCeEecC-CCCccccccCcCCCCCC--------CCCCCcccCccCCC
Q 003450 52 DSCQACGES----ENLMSCD-TCTYAYHAKCLVPPLKA--------PPSGSWRCPECVSP 98 (819)
Q Consensus 52 ~~C~~c~~~----~~~~~C~-~C~~~~H~~c~~p~~~~--------~~~~~w~C~~c~~~ 98 (819)
..|.+|+++ +.++.|| .|...||..|+ +|.. .|.+.|+||.|...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CV--glt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECT--GMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGT--TCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccC--CcCHHHHHhhccCCCCCEECccccCc
Confidence 469999977 4599998 99999999999 6654 46789999999853
No 185
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.77 E-value=5.6e-06 Score=66.98 Aligned_cols=46 Identities=28% Similarity=0.733 Sum_probs=36.3
Q ss_pred cccccccccCC---CCeEecC--CCCccccccCcCCCCCCCC-------CCCcccCccCCC
Q 003450 50 KDDSCQACGES---ENLMSCD--TCTYAYHAKCLVPPLKAPP-------SGSWRCPECVSP 98 (819)
Q Consensus 50 ~~~~C~~c~~~---~~~~~C~--~C~~~~H~~c~~p~~~~~~-------~~~w~C~~c~~~ 98 (819)
...+| +|+.. |.||.|| .|...||..|+ .+...+ ...|+|+.|...
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CV--gi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCV--ILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHH--SCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEE--ccccccccccccCCCCEECCCCCcc
Confidence 45678 79976 4599999 99999999999 555443 368999999753
No 186
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.76 E-value=7.1e-06 Score=66.64 Aligned_cols=48 Identities=19% Similarity=0.643 Sum_probs=36.8
Q ss_pred ccccccccccCC----CCeEecCCCCccccccCcCCCCCCCC---CCCcccCccCCCC
Q 003450 49 AKDDSCQACGES----ENLMSCDTCTYAYHAKCLVPPLKAPP---SGSWRCPECVSPL 99 (819)
Q Consensus 49 ~~~~~C~~c~~~----~~~~~C~~C~~~~H~~c~~p~~~~~~---~~~w~C~~c~~~~ 99 (819)
....+| +|+.. +.||.||.|...||..|+ .+...+ .+.|+|+.|....
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cv--gl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCV--GIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHH--TCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeec--CcccccccCCCeEECCCccccc
Confidence 345678 79875 349999999999999999 444322 3689999998654
No 187
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.76 E-value=0.00016 Score=84.48 Aligned_cols=68 Identities=22% Similarity=0.233 Sum_probs=53.7
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHH
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATW 355 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~ 355 (819)
..|.+.|.+||...+ ....-.||.+++|+|||.+.+.++..+...+ .++||++|+ ..+.+....+...
T Consensus 188 ~~LN~~Q~~AV~~al---~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~-~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFAL---SQKELAIIHGPPGTGKTTTVVEIILQAVKQG-LKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHH---HCSSEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHh---cCCCceEEECCCCCCHHHHHHHHHHHHHhCC-CeEEEEcCchHHHHHHHHHHHhc
Confidence 469999999998653 2344689999999999999999888887654 589999996 5556666666654
No 188
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.74 E-value=0.00028 Score=81.75 Aligned_cols=173 Identities=16% Similarity=0.240 Sum_probs=96.0
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcc-hHHHHHHHHHHcCCCeEE
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWAPQMNVV 362 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~l-l~qW~~e~~~~~p~~~v~ 362 (819)
..|.+.|.+++..+. .+...++.++.|+|||.++..++..+......++|+++|+.. +.+-...+... +++++
T Consensus 179 ~~ln~~Q~~av~~~l----~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~--~~~~~ 252 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT--GLKVV 252 (624)
T ss_dssp CCCCHHHHHHHHHHH----TCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTT--TCCEE
T ss_pred CCCCHHHHHHHHHHh----cCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhc--CCeEE
Confidence 358999999998663 356788999999999999988888877655569999999744 45555556543 33433
Q ss_pred EEecChhH--------HHHHHHhhhcCCCCc--ccc--ccccCCcc-------cc-----ccccccccccEEEchhhHHh
Q 003450 363 MYVGTSQA--------RNIIREYEFYFPKNP--KKV--KKKKSGQV-------VS-----ESKQDRIKFDVLLTSYEMIN 418 (819)
Q Consensus 363 ~~~g~~~~--------r~~~~~~e~~~~~~~--~~~--~~~~~~~~-------~~-----~~~~~~~~~~vvi~ty~~l~ 418 (819)
-+.+.... ........- ..... ... .+...+.. .. .........+||++|...+.
T Consensus 253 R~~~~~r~~~~~~~~~~tl~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~ 331 (624)
T 2gk6_A 253 RLCAKSREAIDSPVSFLALHNQIRN-MDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAG 331 (624)
T ss_dssp ECCCTGGGSCCCTTTTTBHHHHHTS-CSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGGG
T ss_pred eeccccchhhccchhhhhHHHHHHh-ccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhhc
Confidence 22221110 000000000 00000 000 00000000 00 00001134678888876654
Q ss_pred hcccccCCccceEEEecccccccCcccHHHHHHHhcccCcEEEEeCCCCCC
Q 003450 419 LDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQN 469 (819)
Q Consensus 419 ~~~~~l~~~~~~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n 469 (819)
. ..+....|++||||||...-... ..+..+....++.|-|=|-|-
T Consensus 332 ~--~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 332 D--PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQL 376 (624)
T ss_dssp C--GGGTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred c--hhhhcCCCCEEEEecccccCcHH----HHHHHHhcCCeEEEecChhcc
Confidence 2 33556789999999997654322 122223345689999998664
No 189
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.70 E-value=3.7e-06 Score=73.49 Aligned_cols=46 Identities=33% Similarity=0.659 Sum_probs=36.0
Q ss_pred ccccccccC---------CCCeEecCCCCccccccCcCCC--C-CCCCCCCcccCccC
Q 003450 51 DDSCQACGE---------SENLMSCDTCTYAYHAKCLVPP--L-KAPPSGSWRCPECV 96 (819)
Q Consensus 51 ~~~C~~c~~---------~~~~~~C~~C~~~~H~~c~~p~--~-~~~~~~~w~C~~c~ 96 (819)
..+|.+|.+ +++||.|+.|++.||.+|+... + ..++.+.|+|+.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 356888854 3469999999999999999542 2 24678999999996
No 190
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.70 E-value=3.5e-06 Score=80.52 Aligned_cols=48 Identities=27% Similarity=0.647 Sum_probs=36.4
Q ss_pred ccccccccccCCC----CeEecCCCCccccccCcCCCCCC-CCCCCcccCccCC
Q 003450 49 AKDDSCQACGESE----NLMSCDTCTYAYHAKCLVPPLKA-PPSGSWRCPECVS 97 (819)
Q Consensus 49 ~~~~~C~~c~~~~----~~~~C~~C~~~~H~~c~~p~~~~-~~~~~w~C~~c~~ 97 (819)
.+..+| +|+.++ .+++||.|+++||..|+...... .+.+.|+|+.|..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 456789 899753 49999999999999999433221 2367999999984
No 191
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.68 E-value=0.00035 Score=77.92 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=51.5
Q ss_pred CCCchhHHHHHHHHHHhhcCCC-ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchH
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~-~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~ 346 (819)
..|.+-|.+++..+......+. ..+|.++.|+|||.++.+++..+...+..++++++|+....
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa 87 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAK 87 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHH
Confidence 4699999999998765555444 78899999999999988888888777666899999986553
No 192
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.65 E-value=1.8e-05 Score=62.14 Aligned_cols=44 Identities=20% Similarity=0.701 Sum_probs=32.6
Q ss_pred cccccccccCC---CCeEecCC--CCccccccCcCCCCCCCC------CCCcccCccC
Q 003450 50 KDDSCQACGES---ENLMSCDT--CTYAYHAKCLVPPLKAPP------SGSWRCPECV 96 (819)
Q Consensus 50 ~~~~C~~c~~~---~~~~~C~~--C~~~~H~~c~~p~~~~~~------~~~w~C~~c~ 96 (819)
...+| +|+.. |.||.||. |...||..|+ .+...| ...|+|+.|+
T Consensus 9 ~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cv--gi~~~~~~~~~~p~~~~C~~Cr 63 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCV--LIPDKPGESAEVPPVFYCELCR 63 (68)
T ss_dssp CEECC-TTCCCSCCSCEEECSCTTTCEEEETTTS--CCCSSTTSCCCCCSSCCCHHHH
T ss_pred CCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhC--CCCcccccccCCCCcEECcCcc
Confidence 34668 68754 55999995 9999999999 443322 2479999996
No 193
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.64 E-value=0.0005 Score=81.44 Aligned_cols=169 Identities=18% Similarity=0.262 Sum_probs=96.4
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcch-HHHHHHHHHHcCCCeEE
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAPQMNVV 362 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll-~qW~~e~~~~~p~~~v~ 362 (819)
..|.+.|.+++..+. .+.-.++.++.|+|||.++..++..+......++|+++|+... .+-...+... +++++
T Consensus 355 ~~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~--g~~vv 428 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT--GLKVV 428 (800)
T ss_dssp CCCCHHHHHHHHHHH----TSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTT--TCCEE
T ss_pred cCCCHHHHHHHHHhc----cCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHh--CcceE
Confidence 468999999998652 3456899999999999999888888876555699999997544 4555555543 33333
Q ss_pred EEecChhHH------------HHHHHhhhcCCCCc--cccc--cccCCccc-------c-----ccccccccccEEEchh
Q 003450 363 MYVGTSQAR------------NIIREYEFYFPKNP--KKVK--KKKSGQVV-------S-----ESKQDRIKFDVLLTSY 414 (819)
Q Consensus 363 ~~~g~~~~r------------~~~~~~e~~~~~~~--~~~~--~~~~~~~~-------~-----~~~~~~~~~~vvi~ty 414 (819)
-+ |..... ..+... .... .... +...+... . ....-....+||++|.
T Consensus 429 Rl-g~~~r~~i~~~~~~~tlh~~~~~~----~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~ 503 (800)
T 2wjy_A 429 RL-CAKSREAIDSPVSFLALHNQIRNM----DSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTC 503 (800)
T ss_dssp EC-CCGGGGGCCCTTGGGBHHHHHHTC----TTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEET
T ss_pred ee-cccchhhhcchhhhhhHHHHHHcC----ccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEch
Confidence 22 221100 000000 0000 0000 00000000 0 0000112467888887
Q ss_pred hHHhhcccccCCccceEEEecccccccCcccHHHHHHHhcccCcEEEEeCCCCCC
Q 003450 415 EMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQN 469 (819)
Q Consensus 415 ~~l~~~~~~l~~~~~~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n 469 (819)
..+.. ..+....|++||||||...-... ..+..+....++.|-|=|.|-
T Consensus 504 ~~~~~--~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~QL 552 (800)
T 2wjy_A 504 VGAGD--PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQL 552 (800)
T ss_dssp GGGGC--TTTTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred hhhCC--hhhhcCCCCEEEEECCCCCCcHH----HHHHHHhcCCeEEEecccccC
Confidence 76543 33556789999999997653321 122333445789999998664
No 194
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=97.64 E-value=9.6e-06 Score=59.97 Aligned_cols=47 Identities=23% Similarity=0.442 Sum_probs=33.2
Q ss_pred ccccccccccccCcCCCCCcccccccchhhh-hhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 003450 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVK-QYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (819)
Q Consensus 101 ~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~-eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~ 173 (819)
.|++|++.|.... ... +|||||+|+ .+|||+|++.|. + ..++.|.++
T Consensus 2 ~VE~Ild~r~~~~---------------g~~~~YlVKWkgy--~~~TWEp~~nL~------~---~li~~f~~~ 49 (54)
T 1x3p_A 2 VAESVIGKRVGDD---------------GKTIEYLVKWTDM--SDATWEPQDNVD------S---TLVLLYQQQ 49 (54)
T ss_dssp CSSCCCCBSSCSS---------------SCCCCBCCCCSSS--SSCSCSTTCCSS------S---SSHHHHTSS
T ss_pred eEEEEEEEEEcCC---------------CcEEEEEEEECCC--CcCCccchHHCC------H---HHHHHHHHH
Confidence 4788988875431 114 899999996 689999999873 2 246677643
No 195
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=97.63 E-value=1.3e-05 Score=66.69 Aligned_cols=55 Identities=20% Similarity=0.364 Sum_probs=39.7
Q ss_pred cccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCc-ccccccChHHHHHHhhcChhHHHHHHhHHhhhc
Q 003450 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSY-LHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMS 175 (819)
Q Consensus 100 ~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~-~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~~~ 175 (819)
..|++||+.|+... ....+|||||+|++. .++||+|++.|.. . ...++.|.++..
T Consensus 31 y~VE~Il~~r~~~~--------------~g~~~YlVkWkGy~~~~~~TWEP~~nl~~----c---~~li~~f~~~~~ 86 (92)
T 2rso_A 31 YVVEKVLKHRMARK--------------GGGYEYLLKWEGYDDPSDNTWSSEADCSG----C---KQLIEAYWNEHG 86 (92)
T ss_dssp CCEEEEEEEEECTT--------------SSCEEEEEEETTCCCCTTSEEECGGGGGT----S---HHHHHHHHHHHT
T ss_pred EEEEEEEEEEeecC--------------CCEEEEEEEEccCCCcccCccccHHHHhh----H---HHHHHHHHHHcC
Confidence 56889998875221 012689999999985 7799999999842 1 246888887653
No 196
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00042 Score=82.20 Aligned_cols=172 Identities=17% Similarity=0.199 Sum_probs=95.2
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcc-hHHHHHHHHHHcCCCeEE
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWAPQMNVV 362 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~l-l~qW~~e~~~~~p~~~v~ 362 (819)
..|.+.|.+++..+ ..+.-.++.++.|+|||.++..++..+......++||++|+.. +.+-...+... +++++
T Consensus 359 ~~Ln~~Q~~Av~~~----l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~--g~~il 432 (802)
T 2xzl_A 359 AQLNSSQSNAVSHV----LQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDL--GLKVV 432 (802)
T ss_dssp CCCCHHHHHHHHHH----TTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHT--TCCEE
T ss_pred ccCCHHHHHHHHHH----hcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhh--CccEE
Confidence 36899999999866 2355689999999999999888887776544469999999754 45666666654 33333
Q ss_pred EEecChhH--------HHHHHHhhhcCCCCc-cccc--cccCCcc-------cc-----ccccccccccEEEchhhHHhh
Q 003450 363 MYVGTSQA--------RNIIREYEFYFPKNP-KKVK--KKKSGQV-------VS-----ESKQDRIKFDVLLTSYEMINL 419 (819)
Q Consensus 363 ~~~g~~~~--------r~~~~~~e~~~~~~~-~~~~--~~~~~~~-------~~-----~~~~~~~~~~vvi~ty~~l~~ 419 (819)
-+.+.... ........ ...... .... +...+.. .. .........+||++|...+..
T Consensus 433 R~g~~~r~~i~~~~~~~tl~~~~~-~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~ 511 (802)
T 2xzl_A 433 RLTAKSREDVESSVSNLALHNLVG-RGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD 511 (802)
T ss_dssp ECCCGGGTTSCCTTGGGBHHHHHH-TTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGGC
T ss_pred eecccchhhhcchhhhhhHHHHHH-hhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcCh
Confidence 22211100 00000000 000000 0000 0000000 00 000011246788888776652
Q ss_pred cccccCCccceEEEecccccccCcccHHHHHHHhcccCcEEEEeCCCCCC
Q 003450 420 DSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQN 469 (819)
Q Consensus 420 ~~~~l~~~~~~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n 469 (819)
..+.. .|++||||||+.+.... ..+..+....++.|-|=|-|-
T Consensus 512 --~~L~~-~fd~viIDEA~q~~e~~----~li~l~~~~~~lilvGD~~QL 554 (802)
T 2xzl_A 512 --KRLDT-KFRTVLIDESTQASEPE----CLIPIVKGAKQVILVGDHQQL 554 (802)
T ss_dssp --TTCCS-CCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred --HHHhc-cCCEEEEECccccchHH----HHHHHHhCCCEEEEEeCcccc
Confidence 23444 89999999998763221 122233445789999998663
No 197
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.62 E-value=0.00035 Score=79.76 Aligned_cols=132 Identities=21% Similarity=0.167 Sum_probs=83.3
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHcCCCeEE
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVV 362 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~p~~~v~ 362 (819)
+..|.+.|.+++..+ ..++..+|.++.|+|||.++.+++..+...+ .++++++|+........+.. +....
T Consensus 187 ~~~L~~~Q~~Av~~~----~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g-~~Vl~~ApT~~Aa~~L~e~~----~~~a~ 257 (574)
T 3e1s_A 187 RKGLSEEQASVLDQL----AGHRLVVLTGGPGTGKSTTTKAVADLAESLG-LEVGLCAPTGKAARRLGEVT----GRTAS 257 (574)
T ss_dssp TTTCCHHHHHHHHHH----TTCSEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHH----TSCEE
T ss_pred cCCCCHHHHHHHHHH----HhCCEEEEEcCCCCCHHHHHHHHHHHHHhcC-CeEEEecCcHHHHHHhHhhh----cccHH
Confidence 467999999999876 4567889999999999998877777665543 58999999876655444321 11111
Q ss_pred EEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccccccC
Q 003450 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (819)
Q Consensus 363 ~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~~kn 442 (819)
.++ +-..+ ... .+. ...-...++++|||||||.+-.
T Consensus 258 Tih---------~ll~~--------------------------~~~-------~~~--~~~~~~~~~dvlIIDEasml~~ 293 (574)
T 3e1s_A 258 TVH---------RLLGY--------------------------GPQ-------GFR--HNHLEPAPYDLLIVDEVSMMGD 293 (574)
T ss_dssp EHH---------HHTTE--------------------------ETT-------EES--CSSSSCCSCSEEEECCGGGCCH
T ss_pred HHH---------HHHcC--------------------------Ccc-------hhh--hhhcccccCCEEEEcCccCCCH
Confidence 110 00000 000 000 0112334689999999998832
Q ss_pred cccHHHHHHHhcccCcEEEEeCCCCCC
Q 003450 443 KDSKLFSSLKQYSTRHRVLLTGTPLQN 469 (819)
Q Consensus 443 ~~s~~~~~l~~l~~~~~llLTgTP~~n 469 (819)
..+...+..+....+++|.|-|-|.
T Consensus 294 --~~~~~Ll~~~~~~~~lilvGD~~QL 318 (574)
T 3e1s_A 294 --ALMLSLLAAVPPGARVLLVGDTDQL 318 (574)
T ss_dssp --HHHHHHHTTSCTTCEEEEEECTTSC
T ss_pred --HHHHHHHHhCcCCCEEEEEeccccc
Confidence 2333444455677899999999764
No 198
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=97.61 E-value=1e-05 Score=68.85 Aligned_cols=51 Identities=24% Similarity=0.320 Sum_probs=40.3
Q ss_pred cchhhhH------hhhhcCCcceeeEeeecccccccccccCCCCccc----cHHHHHHHHH
Q 003450 191 WTTVDRI------LACRGEDDEKEYLVKYKELSYDECYWEYESDISA----FQPEIERFIK 241 (819)
Q Consensus 191 ~~~~eri------l~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~----~~~~~~~~~~ 241 (819)
...||+| ++.|...+..+|||||+|.++.++|||+.+++.. ....++.|.+
T Consensus 36 ~Y~VE~i~Dp~~ildkR~~~g~~eYlVKWkG~s~~~nTWEp~enL~~~~~~g~kklenY~k 96 (115)
T 2b2y_C 36 IYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKK 96 (115)
T ss_dssp HHHHHHHCBTTTTCCTTSSSCEEEEEEEETTSCGGGCEEECHHHHHHHTCBCTHHHHHHHC
T ss_pred eEEEeecCCcccccccceeCCcEEEEEEECCCCchhcccCCHHHcCCccchHHHHHHHHHH
Confidence 4688886 8888888999999999999999999999876532 1235666654
No 199
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.46 E-value=2.9e-05 Score=57.21 Aligned_cols=41 Identities=22% Similarity=0.640 Sum_probs=31.3
Q ss_pred cccccCCC----CeEecC-CCCccccccCcCCCCCCCC--CCCcccCccC
Q 003450 54 CQACGESE----NLMSCD-TCTYAYHAKCLVPPLKAPP--SGSWRCPECV 96 (819)
Q Consensus 54 C~~c~~~~----~~~~C~-~C~~~~H~~c~~p~~~~~~--~~~w~C~~c~ 96 (819)
|.+|+++. .++.|| .|...||..|+ .+...+ .+.|+|+.|+
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cv--gl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCV--GVSPEMAENEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCEEETTTT--TCCHHHHHHSCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCCCCCccCccccc--CCCccccCCCCEECCCCC
Confidence 56677643 399999 89999999999 554432 4789999995
No 200
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=97.44 E-value=1.2e-05 Score=64.97 Aligned_cols=40 Identities=30% Similarity=0.639 Sum_probs=31.7
Q ss_pred cccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHH
Q 003450 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFL 154 (819)
Q Consensus 100 ~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~ 154 (819)
..|++|++.|.... ...+|||||+|+++.+|||+|++.|.
T Consensus 24 yeVE~Ild~R~~~~---------------g~~~YlVKWkGy~~~~~TWEp~~nl~ 63 (81)
T 4hae_A 24 YEVERIVDKRKNKK---------------GKWEYLIRWKGYGSTEDTWEPEHHLL 63 (81)
T ss_dssp EEEEEEEEEEECTT---------------SCEEEEEEETTCCGGGCEEEEGGGEE
T ss_pred EEEEEEEEeEECCC---------------CeEEEEEEECCCCCCCCeEEeHHHhh
Confidence 46899998764211 12689999999999999999999873
No 201
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.41 E-value=3.1e-05 Score=62.12 Aligned_cols=49 Identities=22% Similarity=0.659 Sum_probs=35.5
Q ss_pred ccccccccccCC----CCeEecCCCCccccccCcCCCCCCCCC-CCcccCccCCC
Q 003450 49 AKDDSCQACGES----ENLMSCDTCTYAYHAKCLVPPLKAPPS-GSWRCPECVSP 98 (819)
Q Consensus 49 ~~~~~C~~c~~~----~~~~~C~~C~~~~H~~c~~p~~~~~~~-~~w~C~~c~~~ 98 (819)
....+| +|+.+ +.||.||.|...||..|+.-.....+. +.|+|+.|...
T Consensus 8 ~~~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 8 TVPVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CCeeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 345667 68864 349999999999999999443332222 67999999853
No 202
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.30 E-value=7.9e-05 Score=54.91 Aligned_cols=44 Identities=18% Similarity=0.528 Sum_probs=33.5
Q ss_pred cccccccCC---CCeEecCCCCccccccCcCCCCCCCCCCCcccCccCC
Q 003450 52 DSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 52 ~~C~~c~~~---~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
.+| +|+.. +.||.||.|...||..|+....... .+.|+|+.|..
T Consensus 5 ~~C-~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~-~~~~~C~~C~~ 51 (52)
T 3o7a_A 5 VTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNV-PEVFVCQKCRD 51 (52)
T ss_dssp BCS-TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGC-CSSCCCHHHHT
T ss_pred eEE-EeCCcCCCCCEEEcCCCCccccccccCCCcccC-CCcEECcCCCC
Confidence 456 47754 3599999999999999996544433 37899999964
No 203
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.27 E-value=0.0012 Score=76.06 Aligned_cols=148 Identities=15% Similarity=0.180 Sum_probs=80.1
Q ss_pred chhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc---CCCCceEEEecCcchH-HHHHHHHHHcCCCeEE
Q 003450 287 HPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG---ERISPHLVVAPLSTLR-NWEREFATWAPQMNVV 362 (819)
Q Consensus 287 ~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~---~~~~~~LIv~P~~ll~-qW~~e~~~~~p~~~v~ 362 (819)
-+.|..++..+ ..++..++.+++|+|||.++..++..+.. ....++++++|+.... +-.+.+..+...+.+.
T Consensus 151 ~~~Q~~Ai~~~----l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVA----LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHH----HTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHH----hcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 57899998765 35778999999999999887777666653 2223899999985554 3334343322111000
Q ss_pred EEecChhHHHHHHHhhhcCCCCccccccccCCcccccccccccccc-EEEchhhHHhhcccccCCccceEEEeccccccc
Q 003450 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFD-VLLTSYEMINLDSASLKPIKWQCMIVDEGHRLK 441 (819)
Q Consensus 363 ~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~~k 441 (819)
...+. ..+.. ....+ ++-.+..............++++||||||+.+-
T Consensus 227 -----~~~~~-------~~~~~-------------------~~Tih~ll~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~ 275 (608)
T 1w36_D 227 -----DEQKK-------RIPED-------------------ASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMID 275 (608)
T ss_dssp -----SCCCC-------SCSCC-------------------CBTTTSCC-----------CTTSCCSCSEEEECSGGGCB
T ss_pred -----HHHHh-------ccchh-------------------hhhhHhhhccCCCchHHHhccCCCCCCCEEEEechhhCC
Confidence 00000 00000 00000 010111110000111223478999999999763
Q ss_pred CcccHHHHHHHhcccCcEEEEeCCCCCCCh
Q 003450 442 NKDSKLFSSLKQYSTRHRVLLTGTPLQNNL 471 (819)
Q Consensus 442 n~~s~~~~~l~~l~~~~~llLTgTP~~n~~ 471 (819)
...+...+..+....+++|.|-|-|-.+
T Consensus 276 --~~~~~~Ll~~l~~~~~liLvGD~~QL~~ 303 (608)
T 1w36_D 276 --LPMMSRLIDALPDHARVIFLGDRDQLAS 303 (608)
T ss_dssp --HHHHHHHHHTCCTTCEEEEEECTTSGGG
T ss_pred --HHHHHHHHHhCCCCCEEEEEcchhhcCC
Confidence 2334455666777889999999866543
No 204
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=97.14 E-value=0.00012 Score=69.71 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=39.1
Q ss_pred cchhhhH------hhhhcCCcceeeEeeecccccccccccCCCCcc----ccHHHHHHHHHH
Q 003450 191 WTTVDRI------LACRGEDDEKEYLVKYKELSYDECYWEYESDIS----AFQPEIERFIKI 242 (819)
Q Consensus 191 ~~~~eri------l~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~----~~~~~~~~~~~~ 242 (819)
...||+| ++.+...+..+|||||+|.+|.+|||++.+.+. .....++.|.+.
T Consensus 36 ~y~VE~i~d~~~~ld~r~~~~~~eYlVKWkg~s~~h~tWe~~~~L~~~~~~~~~kl~nf~kk 97 (187)
T 2b2y_A 36 IYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKK 97 (187)
T ss_dssp HHHHHHHCCTTTTCC-CCSCCEEEEEEEETTSCGGGCEEECHHHHHHTTCBCHHHHHHHHHH
T ss_pred eEEeeccCCcccccCccccCCcEEEEEEECCCCcccCeeCCHHHhCccchhhHHHHHHHHHh
Confidence 3478888 476767788999999999999999999987653 123457777654
No 205
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=97.00 E-value=8.8e-05 Score=70.02 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=29.0
Q ss_pred ceeeEeeecccccccccccCCCCccccHHH--HHHHHHH
Q 003450 206 EKEYLVKYKELSYDECYWEYESDISAFQPE--IERFIKI 242 (819)
Q Consensus 206 ~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~--~~~~~~~ 242 (819)
..+|||||+|.+|.+|||++++.+..+... ++.|.+.
T Consensus 46 ~~EYlVKWKg~Sy~HnTWe~ee~L~~~~glkKl~nf~kk 84 (177)
T 2h1e_A 46 NYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQ 84 (177)
T ss_dssp HEEEEEEETTSCGGGCEEECHHHHCSCTTHHHHHHHHHH
T ss_pred ceEEEEEECCCccccCeecCHHHHhhchHHHHHHHHHHH
Confidence 469999999999999999998877644433 6677653
No 206
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=96.90 E-value=0.00012 Score=80.65 Aligned_cols=49 Identities=20% Similarity=0.651 Sum_probs=37.6
Q ss_pred cccccccccccCC----CCeEecCCCCccccccCcCCCCCCCCC---CCcccCccCCCC
Q 003450 48 DAKDDSCQACGES----ENLMSCDTCTYAYHAKCLVPPLKAPPS---GSWRCPECVSPL 99 (819)
Q Consensus 48 ~~~~~~C~~c~~~----~~~~~C~~C~~~~H~~c~~p~~~~~~~---~~w~C~~c~~~~ 99 (819)
+....+| +|+.. +.|+.||.|...||..|+ .+...+. +.|+|+.|....
T Consensus 34 ~~~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cv--gl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 34 PPPPVYC-VCRQPYDVNRFMIECDICKDWFHGSCV--GVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCCCEET-TTTEECCTTSCEEEBTTTCCEEEHHHH--TCCGGGGGGEEEBCCHHHHHHH
T ss_pred CCCCeEE-eCCCcCCCCCCeEEccCCCCceeeeec--CcCcccccCCCEEECCCCcCCc
Confidence 3455678 78864 449999999999999999 5555442 579999998643
No 207
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.74 E-value=0.006 Score=58.51 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=28.4
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~ 342 (819)
.-.++.++||+|||..++..+..+...+ .+++++.|.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g-~~v~~~~~~ 40 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK-KKVAVFKPK 40 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT-CEEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEeec
Confidence 3467899999999998888777665443 478888886
No 208
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.60 E-value=0.0092 Score=69.61 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=51.0
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC---CCceEEEecCc-chHHHHHHHHHHc
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLS-TLRNWEREFATWA 356 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~---~~~~LIv~P~~-ll~qW~~e~~~~~ 356 (819)
.|.+.|.++|. ...+..++.+..|+|||.+.+.-+.++...+ +..+|+++++. ...+..+.+....
T Consensus 9 ~Ln~~Q~~av~------~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 9 SLNDKQREAVA------APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TCCHHHHHHHT------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHh------CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 58999999986 4467788889999999999999888887642 24799999974 4455666666654
No 209
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.58 E-value=0.0031 Score=68.44 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=69.7
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCC
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPK 383 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~~~~g~~~~r~~~~~~e~~~~~ 383 (819)
+-.++.+..|+|||......+. ..+.||++|+ .+...|.+.+.+...
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~------~~~~lVlTpT~~aa~~l~~kl~~~~~-------------------------- 209 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN------FEEDLILVPGRQAAEMIRRRANASGI-------------------------- 209 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC------TTTCEEEESCHHHHHHHHHHHTTTSC--------------------------
T ss_pred cEEEEEcCCCCCHHHHHHHHhc------cCCeEEEeCCHHHHHHHHHHhhhcCc--------------------------
Confidence 3467899999999986655442 1578999996 666778877743210
Q ss_pred CccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccccccCcccHHHHHHHhcccCcEEEEe
Q 003450 384 NPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLT 463 (819)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLT 463 (819)
...-..-+.|++.+...........+++||||||..+ ......++..+....+++|.
T Consensus 210 --------------------~~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~---~~~~l~~l~~~~~~~~vilv 266 (446)
T 3vkw_A 210 --------------------IVATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLML---HTGCVNFLVEMSLCDIAYVY 266 (446)
T ss_dssp --------------------CCCCTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGS---CHHHHHHHHHHTTCSEEEEE
T ss_pred --------------------cccccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccC---CHHHHHHHHHhCCCCEEEEe
Confidence 0001123567777655444444456899999999866 33333333333334899999
Q ss_pred CCCCCC
Q 003450 464 GTPLQN 469 (819)
Q Consensus 464 gTP~~n 469 (819)
|-|-|-
T Consensus 267 GD~~Ql 272 (446)
T 3vkw_A 267 GDTQQI 272 (446)
T ss_dssp ECTTSC
T ss_pred cCcccc
Confidence 998654
No 210
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.57 E-value=0.011 Score=57.58 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=27.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~ 342 (819)
-++.++||+|||..++..+..+...+ .+++|+.|.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g-~kVli~k~~ 65 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAK-QHAIVFKPC 65 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTT-CCEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC-CEEEEEEec
Confidence 34799999999998888877665443 488888885
No 211
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=96.55 E-value=0.00081 Score=73.23 Aligned_cols=35 Identities=31% Similarity=0.714 Sum_probs=28.2
Q ss_pred CeEecCCCCccccccCcCCCCCCC---CCCCcccCccCCC
Q 003450 62 NLMSCDTCTYAYHAKCLVPPLKAP---PSGSWRCPECVSP 98 (819)
Q Consensus 62 ~~~~C~~C~~~~H~~c~~p~~~~~---~~~~w~C~~c~~~ 98 (819)
.++.||.|+..||..|+ .+... .-+.|+||.|...
T Consensus 57 ~mI~CD~C~~WfH~~CV--gi~~~~a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 57 QWIGCDSCQTWYHFLCS--GLEQFEYYLYEKFFCPKCVPH 94 (528)
T ss_dssp SEEECTTTCCEEEGGGT--TCCGGGTTTEEECCCTTTHHH
T ss_pred CEEECCCCCcCCCCcCC--CCChhHhcCCCeEECcCCcCC
Confidence 39999999999999999 55442 2367999999854
No 212
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.37 E-value=0.0095 Score=58.76 Aligned_cols=39 Identities=26% Similarity=0.089 Sum_probs=29.3
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~ 342 (819)
.+.-.++.++||+|||..++.++..+...+ .+++++.|.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g-~kVli~~~~ 49 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD-VKYLVFKPK 49 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTT-CCEEEEEEC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcC-CEEEEEEec
Confidence 344567899999999999988887775443 377777774
No 213
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=96.35 E-value=0.001 Score=62.92 Aligned_cols=47 Identities=26% Similarity=0.683 Sum_probs=35.3
Q ss_pred cccccccCC---C----CeEecCCCCccccccCcCCCCCC--------CCC-CCcccCccCCCCc
Q 003450 52 DSCQACGES---E----NLMSCDTCTYAYHAKCLVPPLKA--------PPS-GSWRCPECVSPLN 100 (819)
Q Consensus 52 ~~C~~c~~~---~----~~~~C~~C~~~~H~~c~~p~~~~--------~~~-~~w~C~~c~~~~~ 100 (819)
.+|.+|++. + .++.||.|...||..|.. +.. .|+ ..|+||.|....+
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvg--i~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCEN--LSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSS--CCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccc--cCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 468888753 3 399999999999999994 432 222 4799999997554
No 214
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.16 E-value=0.045 Score=57.88 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=38.2
Q ss_pred CchhHHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 286 LHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 286 L~~~Q~~~v~~l~~~~~~~~---~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
++|+|.+.+..+......++ ..++.++.|+|||..+.+++..+...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 67999999988877766654 37899999999999999999988654
No 215
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.14 E-value=0.015 Score=62.24 Aligned_cols=68 Identities=18% Similarity=0.085 Sum_probs=45.6
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH-hcCCCCceEEEecCc-chHHHHHHHHHH
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL-FGERISPHLVVAPLS-TLRNWEREFATW 355 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l-~~~~~~~~LIv~P~~-ll~qW~~e~~~~ 355 (819)
..|.|||...+..+. ..+..++.-.-+.|||..+.+++.+. .......+++++|.. ....+-+.+..+
T Consensus 162 ~~L~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp CCCCHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 579999999887652 23557888899999998876666553 333334789999963 333333555544
No 216
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.0006 Score=81.58 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=33.8
Q ss_pred chhhhHhhhhcC-------------------CcceeeEeeecccccccccccCCCCcc
Q 003450 192 TTVDRILACRGE-------------------DDEKEYLVKYKELSYDECYWEYESDIS 230 (819)
Q Consensus 192 ~~~eril~~~~~-------------------~~~~~~lvKw~~l~y~~~TWE~~~~~~ 230 (819)
..||+||++|-. .+..||||||+|.+|.+||||+++.+.
T Consensus 38 ~~ve~vl~~r~~~~~~~~~~~~~~~~~~~~~~~~~eylvKWkg~s~~hntWe~~e~L~ 95 (800)
T 3mwy_W 38 HGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIG 95 (800)
T ss_dssp CBCSEEEEEECCCC--------CCSCCHHHHHHHCEEEEECSSSCTTSCEEECHHHHC
T ss_pred CchhhhccccccccccCCccccccCcCcCCCcCceEEEEEeCCcceeeccccCHHHHh
Confidence 479999999866 456799999999999999999987654
No 217
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.88 E-value=0.026 Score=54.17 Aligned_cols=38 Identities=16% Similarity=0.031 Sum_probs=28.8
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~ 342 (819)
+.=.++.++||+|||..++..+..+...+ .+++|+.|.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g-~kV~v~k~~ 45 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAK-QKIQVFKPE 45 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEEEC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCC-CEEEEEEec
Confidence 34457899999999988888777765333 488888886
No 218
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=95.84 E-value=0.0019 Score=58.46 Aligned_cols=52 Identities=17% Similarity=0.530 Sum_probs=42.4
Q ss_pred ccccccccccccCCCCeEecC--CCCccccccCcCCCCCC------CCCCCcccCccCCC
Q 003450 47 IDAKDDSCQACGESENLMSCD--TCTYAYHAKCLVPPLKA------PPSGSWRCPECVSP 98 (819)
Q Consensus 47 ~~~~~~~C~~c~~~~~~~~C~--~C~~~~H~~c~~p~~~~------~~~~~w~C~~c~~~ 98 (819)
++....+|.+|++||+|+.|| .|.+.|-..|+.--+.. .....|.|-.|...
T Consensus 75 eDG~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 75 DDGYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp TTSSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred CCCCcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 344567999999999999999 89999999998654433 34678999999854
No 219
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.71 E-value=0.039 Score=54.13 Aligned_cols=38 Identities=13% Similarity=0.016 Sum_probs=28.3
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~ 342 (819)
+.=-++.++||+|||..++..+...... ..+++|+-|.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~-g~kvli~kp~ 56 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYA 56 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT-TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEeec
Confidence 3445689999999998888877665433 3488888885
No 220
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.63 E-value=0.035 Score=63.69 Aligned_cols=69 Identities=20% Similarity=0.095 Sum_probs=46.5
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCC-ceEEEecC-cchHHHHHHHHHHc
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-STLRNWEREFATWA 356 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~-~~LIv~P~-~ll~qW~~e~~~~~ 356 (819)
..|.|||...+..+ ...+..++...-|.|||..+.+++....-...+ .+++++|. .........+..+.
T Consensus 162 ~~l~p~Q~~i~~~l----~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 162 VQLRDYQRDMLKIM----SSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp CCCCHHHHHHHHHH----HHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHhh----ccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 57999999987755 234668888899999998766555544333333 89999996 33334445555554
No 221
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=95.62 E-value=0.0075 Score=55.83 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=30.6
Q ss_pred cccccccCCCC----eEecCCCCccccccCcCCCCCCCCCCC----cccCccCC
Q 003450 52 DSCQACGESEN----LMSCDTCTYAYHAKCLVPPLKAPPSGS----WRCPECVS 97 (819)
Q Consensus 52 ~~C~~c~~~~~----~~~C~~C~~~~H~~c~~p~~~~~~~~~----w~C~~c~~ 97 (819)
.+|. ||.+++ ++.|+.|.+.||..|+..+....-.++ +.|..|..
T Consensus 6 ~yCY-CG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 6 GSVD-EENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHH 58 (177)
T ss_dssp ------CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTST
T ss_pred eEEE-cCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCC
Confidence 4677 887776 999999999999999976553332223 57999974
No 222
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A
Probab=95.60 E-value=0.0014 Score=50.36 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=27.8
Q ss_pred chhhhHhhhhcCCcceeeEeeeccccccccccc
Q 003450 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWE 224 (819)
Q Consensus 192 ~~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE 224 (819)
++||+|++....+|+..|||||+|.+--+..|.
T Consensus 13 le~ekI~g~~~~~Gel~fLvKWKg~~~~d~Vpa 45 (65)
T 3kup_A 13 LDPERIIGATDSSGELMFLMKWKDSDEADLVLA 45 (65)
T ss_dssp CCEEEEEEEECTTSSCEEEEEETTCSCCEEEEH
T ss_pred CCeeEEeeEEcCCCcEEEEEEECCCChhheEEH
Confidence 689999999999999999999999766555443
No 223
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.47 E-value=0.01 Score=62.05 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=28.3
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCC---CceEEEecCc
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERI---SPHLVVAPLS 343 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~---~~~LIv~P~~ 343 (819)
+.+.+|.+++|+|||..+-+++..+...+. .+++.+.+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 109 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD 109 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence 346899999999999999888877754332 2555555433
No 224
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.23 E-value=0.12 Score=54.24 Aligned_cols=51 Identities=18% Similarity=0.282 Sum_probs=30.9
Q ss_pred cceEEEeccccccc-C-cccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhh
Q 003450 428 KWQCMIVDEGHRLK-N-KDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLM 478 (819)
Q Consensus 428 ~~~~lIvDEaH~~k-n-~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll 478 (819)
...+|||||+|.+. . ....+...+.......++.+|+++...-...+.+-+
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 46799999999995 2 223344444444566778888776543333344433
No 225
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=95.19 E-value=0.0099 Score=50.59 Aligned_cols=38 Identities=16% Similarity=0.413 Sum_probs=32.9
Q ss_pred cccccCCCCeEecCCCCccccccCcCCCCCCCCCCCccc
Q 003450 54 CQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRC 92 (819)
Q Consensus 54 C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C 92 (819)
|.+|++... +.|..|+++||..|+.++|...+.+.|+|
T Consensus 61 C~~C~k~~~-~~C~~Cp~sfC~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 61 CDECSSAAV-SFCEFCPHSFCKDHEKGALVPSALEGRLC 98 (107)
T ss_dssp CTTTCSBCC-EECSSSSCEECTTTCTTSCEECTTTTCEE
T ss_pred CCcCCCCCC-cCcCCCCcchhhhccCCcceecCCCCcee
Confidence 456665554 89999999999999999999999999998
No 226
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=95.17 E-value=0.0064 Score=53.40 Aligned_cols=36 Identities=31% Similarity=0.730 Sum_probs=28.5
Q ss_pred eEecCCCCccccccCcCCCCCCCCC----CCcccCccCCC
Q 003450 63 LMSCDTCTYAYHAKCLVPPLKAPPS----GSWRCPECVSP 98 (819)
Q Consensus 63 ~~~C~~C~~~~H~~c~~p~~~~~~~----~~w~C~~c~~~ 98 (819)
|+.|+.|+..||..|+.++....+. +.|.|+.|...
T Consensus 75 m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 75 LMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp CEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred eEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 8999999999999999887654333 34999999853
No 227
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=95.13 E-value=0.0018 Score=70.20 Aligned_cols=44 Identities=23% Similarity=0.679 Sum_probs=34.1
Q ss_pred cccccccCC----CCeEecCCCCccccccCcCCCCCCCC---CCCcccCccCCC
Q 003450 52 DSCQACGES----ENLMSCDTCTYAYHAKCLVPPLKAPP---SGSWRCPECVSP 98 (819)
Q Consensus 52 ~~C~~c~~~----~~~~~C~~C~~~~H~~c~~p~~~~~~---~~~w~C~~c~~~ 98 (819)
.+| +|+++ +.|+.||.|...||..|+ .+...+ .+.|+|+.|...
T Consensus 6 ~yC-iC~~~~d~~~~MIqCD~C~~WfH~~CV--gi~~~~~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 6 VYC-LCRLPYDVTRFMIECDMCQDWFHGSCV--GVEEEKAADIDLYHCPNCEVL 56 (447)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHH--TCCHHHHTTEEECCCHHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEcCCCCcccccccC--CcCcccccCCCEEECCCCccc
Confidence 456 68864 459999999999999999 554432 267999999854
No 228
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.11 E-value=0.084 Score=51.15 Aligned_cols=38 Identities=18% Similarity=0.062 Sum_probs=27.2
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~ 342 (819)
|.=-++.++||+|||...+-.+..+...+ .+++|+.|.
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g-~kvli~kp~ 65 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAK-QKVVVFKPA 65 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTT-CCEEEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcC-CceEEEEec
Confidence 34457899999999987777665554333 478888885
No 229
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.10 E-value=0.25 Score=47.93 Aligned_cols=27 Identities=41% Similarity=0.706 Sum_probs=21.8
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
.+.+|.++.|+|||..+-+++..+...
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 358999999999999888877766443
No 230
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.89 E-value=0.12 Score=54.11 Aligned_cols=38 Identities=13% Similarity=-0.056 Sum_probs=27.6
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~ 342 (819)
+.+.+|.+++|+|||..+-+++..+... ..+++.+...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~~~ 74 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSAD 74 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEHH
Confidence 4578999999999999888887776544 2355555433
No 231
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.80 E-value=0.2 Score=47.20 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=22.8
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
..+.+|.++.|+|||..+-+++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 557899999999999998888877754
No 232
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.70 E-value=0.23 Score=49.00 Aligned_cols=44 Identities=16% Similarity=0.015 Sum_probs=27.7
Q ss_pred chhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 287 HPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 287 ~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
++..++.+..........+..+|.++.|+|||..+-+++..+..
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 44444544433222122235789999999999988777776643
No 233
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.60 E-value=0.13 Score=49.06 Aligned_cols=38 Identities=13% Similarity=0.046 Sum_probs=26.9
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~ 342 (819)
++=.++.++||+|||...+-.+......+ .+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~-~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQ-YKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTT-CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEccc
Confidence 34457899999999976666665554333 578888885
No 234
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.58 E-value=0.068 Score=53.06 Aligned_cols=40 Identities=20% Similarity=-0.014 Sum_probs=27.7
Q ss_pred HHHHHHHHhhc--CCCceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 292 EGLNFLRFSWS--KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 292 ~~v~~l~~~~~--~~~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
..+..+..... .+.+.+|.++.|+|||..+-+++..+...
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34444433332 46788999999999999888777766443
No 235
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.51 E-value=0.17 Score=52.44 Aligned_cols=38 Identities=13% Similarity=0.017 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhcCCC--ceEEEcCCCCcHHHHHHHHHHH
Q 003450 290 QLEGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLAS 327 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~~--~~iLade~GlGKT~~~i~~l~~ 327 (819)
|.+++..|......++ ..|+.++.|+|||..+.+++..
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4445555544444443 6789999999999888887764
No 236
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=94.38 E-value=0.0053 Score=64.41 Aligned_cols=51 Identities=25% Similarity=0.673 Sum_probs=41.7
Q ss_pred cccccccccccCCCCeEecC--CCCccccccCcCCCCCC------CCCCCcccCccCCC
Q 003450 48 DAKDDSCQACGESENLMSCD--TCTYAYHAKCLVPPLKA------PPSGSWRCPECVSP 98 (819)
Q Consensus 48 ~~~~~~C~~c~~~~~~~~C~--~C~~~~H~~c~~p~~~~------~~~~~w~C~~c~~~ 98 (819)
+..+.+|..|+++|++++|| .|.+.|-..|+.--+.. .....|.|-.|...
T Consensus 90 DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 90 DGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 44567899999999999999 99999999999655522 23578999999854
No 237
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.33 E-value=0.13 Score=46.75 Aligned_cols=41 Identities=12% Similarity=-0.036 Sum_probs=26.6
Q ss_pred HHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEE
Q 003450 297 LRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLV 338 (819)
Q Consensus 297 l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LI 338 (819)
+......+.+++|.+++|+|||..|-++...... ...|++|
T Consensus 17 ~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~~v~ 57 (145)
T 3n70_A 17 LQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRN-AQGEFVY 57 (145)
T ss_dssp HHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTT-TTSCCEE
T ss_pred HHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCc-cCCCEEE
Confidence 3333456778999999999999887665443221 2236553
No 238
>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}
Probab=93.90 E-value=0.0049 Score=49.81 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=29.5
Q ss_pred chhhhHhhhhcCCcceeeEeeecccccccccccCC
Q 003450 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYE 226 (819)
Q Consensus 192 ~~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~~ 226 (819)
++||+|++....+|...|||||+|.+.-+..|..+
T Consensus 26 le~EkIlgat~~~Gel~fLVKWKg~~e~DlVpa~e 60 (87)
T 3p7j_A 26 LEAEKILGASDNNGRLTFLIQFKGVDQAEMVPSSV 60 (87)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTCSSCEEEEHHH
T ss_pred CCceEEeeEEccCCcEEEEEEECCCCccceEeHHH
Confidence 68999999998899999999999987666666543
No 239
>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2
Probab=93.90 E-value=0.0032 Score=49.63 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=24.1
Q ss_pred chhhhHhhhhcCCcceeeEeeecccccccccc
Q 003450 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYW 223 (819)
Q Consensus 192 ~~~eril~~~~~~~~~~~lvKw~~l~y~~~TW 223 (819)
++||+|++....+|...|||||+|.+--+..+
T Consensus 23 le~EkIlg~t~~~Gel~fLVKWKg~~e~dlVp 54 (75)
T 3i3c_A 23 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVL 54 (75)
T ss_dssp CCEEEEEEEEC---CCEEEEEETTSSCEEEEE
T ss_pred CCeeEEeeEEccCCcEEEEEEECCCChhceEE
Confidence 69999999998899999999999975544443
No 240
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Probab=93.79 E-value=0.0059 Score=48.22 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=35.9
Q ss_pred chhhhHhhhhcCCcceeeEeeecccccccccccCCCCcc-ccHHHHHHHHH
Q 003450 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDIS-AFQPEIERFIK 241 (819)
Q Consensus 192 ~~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~-~~~~~~~~~~~ 241 (819)
++||+||+.+..+|..+|||||+|. ++++|.+...+. .+...+-+|.+
T Consensus 16 l~~ekI~g~~~~~Gel~fLvkWkg~--d~~dlVpa~~a~~k~Pq~VI~FYE 64 (74)
T 2fmm_A 16 LEPERIIGATDSSGELMFLMKWKNS--DEADLVPAKEANVKCPQVVISFYE 64 (74)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTC--SCCEEEEHHHHHHHCHHHHHHHHH
T ss_pred CCceEEEEEEcCCCcEEEEEEECCC--CcccEEEHHHHhhhChHHHHHHHH
Confidence 6899999999989999999999995 557888765442 34445555544
No 241
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.77 E-value=0.21 Score=50.57 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=29.9
Q ss_pred HHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCc
Q 003450 295 NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (819)
Q Consensus 295 ~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ 343 (819)
..+......+.+.+|.+++|+|||..+-++...+.. ...|++.|-...
T Consensus 20 ~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~-~~~~~~~v~~~~ 67 (265)
T 2bjv_A 20 EQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR-WQGPFISLNCAA 67 (265)
T ss_dssp HHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTT-TTSCEEEEEGGG
T ss_pred HHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCc-cCCCeEEEecCC
Confidence 334343456778999999999999877666554322 223555544333
No 242
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.58 E-value=0.29 Score=50.98 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=20.8
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHh
Q 003450 306 HVILADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l~ 329 (819)
+.+|.++.|+|||..+-+++..+.
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 489999999999999888887764
No 243
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.57 E-value=0.79 Score=43.05 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=22.6
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
..+.+|.++.|+|||..+-+++..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 467899999999999998888777644
No 244
>3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere, cell cycle; 1.93A {Homo sapiens} SCOP: b.34.13.2
Probab=93.54 E-value=0.0059 Score=48.59 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=27.0
Q ss_pred chhhhHhhhhcCCcceeeEeeecccccccccc
Q 003450 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYW 223 (819)
Q Consensus 192 ~~~eril~~~~~~~~~~~lvKw~~l~y~~~TW 223 (819)
++||+|++.....|...|||||+|.+--+..+
T Consensus 10 le~EkI~g~~~~~Gel~fLvKWKg~~~~dlVp 41 (78)
T 3q6s_A 10 LEPERIIGATDSSGELMFLMKWKNSDEADLVP 41 (78)
T ss_dssp CCEEEEEEEECTTSSCEEEEEETTCSCEEEEE
T ss_pred CCceEEeeEEcCCCcEEEEEEECCCChhheEe
Confidence 68999999999999999999999986555444
No 245
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.49 E-value=0.15 Score=54.11 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.1
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHh
Q 003450 305 THVILADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~ 329 (819)
.+.+|.++.|+|||..+-+++..+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999998888777653
No 246
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.48 E-value=0.16 Score=55.89 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=26.4
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCC-CceEEEec
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERI-SPHLVVAP 341 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~-~~~LIv~P 341 (819)
....+|.++.|+|||..+-++...+..... .+++.+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 457899999999999988777776644322 24444433
No 247
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.46 E-value=0.35 Score=50.42 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=20.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHh
Q 003450 306 HVILADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l~ 329 (819)
+.+|.++.|+|||..+-+++..+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 589999999999999888887764
No 248
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.26 E-value=0.078 Score=55.68 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=25.9
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCc
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ 343 (819)
.++.+|.+++|+|||..|-+++..+ ..+++.|....
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~----~~~~~~v~~~~ 86 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA----NSTFFSVSSSD 86 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH----TCEEEEEEHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH----CCCEEEEchHH
Confidence 4578999999999999988877664 22555554433
No 249
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.19 E-value=0.63 Score=49.52 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 306 HVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
..+|.++.|+|||..+-+++..+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4689999999999998888877743
No 250
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.94 E-value=0.4 Score=50.60 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhcCCC--ceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 290 QLEGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~~--~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
|.+++..+......++ +.++.++.|+|||..+-+++..+..
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3445555544444443 3899999999999999888887653
No 251
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=92.84 E-value=0.13 Score=53.62 Aligned_cols=38 Identities=29% Similarity=0.461 Sum_probs=26.7
Q ss_pred HHHHHHHhhcCCC--ceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 293 GLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 293 ~v~~l~~~~~~~~--~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
.+..+......++ +.+|.++.|+|||..+-+++..+..
T Consensus 25 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~ 64 (319)
T 2chq_A 25 VIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG 64 (319)
T ss_dssp HHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcC
Confidence 3344444434333 5899999999999998888877643
No 252
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.80 E-value=0.078 Score=56.52 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.8
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
.++.+|.+++|+|||..|-+++..+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4678999999999999998888776
No 253
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.66 E-value=0.09 Score=47.76 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=18.9
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHH
Q 003450 301 WSKQTHVILADEMGLGKTIQSIAF 324 (819)
Q Consensus 301 ~~~~~~~iLade~GlGKT~~~i~~ 324 (819)
...+.+.+|.+++|+|||..|-++
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHHGGG
T ss_pred hCCCCcEEEECCCCccHHHHHHHH
Confidence 356678999999999999765443
No 254
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.48 E-value=0.19 Score=54.00 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=28.5
Q ss_pred chhHHHHHHHHHHhh-cC--CCceEEEcCCCCcHHHHHHHHHHHHh
Q 003450 287 HPYQLEGLNFLRFSW-SK--QTHVILADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 287 ~~~Q~~~v~~l~~~~-~~--~~~~iLade~GlGKT~~~i~~l~~l~ 329 (819)
++.+++.+......+ .. .+..+|.++.|+|||..+-+++..+.
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 555665554332222 22 34688999999999998888777663
No 255
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.36 E-value=0.34 Score=51.65 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=35.6
Q ss_pred chhHHHHHHHHHHhhcC----CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 003450 287 HPYQLEGLNFLRFSWSK----QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (819)
Q Consensus 287 ~~~Q~~~v~~l~~~~~~----~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P 341 (819)
++.+++++..+...... +++.+|.+++|+|||..+-++...+... .|++.+..
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--~~~~~~~~ 105 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD--TPFTAIAG 105 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS--CCEEEEEG
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc--CCcccccc
Confidence 45666665555444433 3478999999999999998888877422 25555544
No 256
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.30 E-value=0.24 Score=50.67 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=26.9
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCc
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ 343 (819)
....+.+|.++.|+|||..+-+++..+ ..+++.+....
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~----~~~~~~v~~~~ 86 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET----NATFIRVVGSE 86 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT----TCEEEEEEGGG
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh----CCCEEEEehHH
Confidence 456789999999999999887776654 22555554433
No 257
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.28 E-value=0.28 Score=52.47 Aligned_cols=43 Identities=23% Similarity=0.160 Sum_probs=28.8
Q ss_pred chhHHHHHHHHHHhh---cCCCceEEEcCCCCcHHHHHHHHHHHHh
Q 003450 287 HPYQLEGLNFLRFSW---SKQTHVILADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 287 ~~~Q~~~v~~l~~~~---~~~~~~iLade~GlGKT~~~i~~l~~l~ 329 (819)
++.+++.+....... ..+.+.+|.++.|+|||..+-+++..+.
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 455555543322222 3456789999999999998887777664
No 258
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.27 E-value=0.11 Score=54.60 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=28.1
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcch
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll 345 (819)
.++.+|.+++|+|||..+-+++..+ ...+++.|....++
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~---~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA---NNSTFFSISSSDLV 83 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT---TSCEEEEEECCSSC
T ss_pred CceEEEECCCCccHHHHHHHHHHHc---CCCcEEEEEhHHHH
Confidence 4688999999999999988887765 22355555555443
No 259
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.98 E-value=1.1 Score=50.13 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.3
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
.+..+|.++.|+|||..+-+++..+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3678999999999999988887765
No 260
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.61 E-value=0.99 Score=47.64 Aligned_cols=43 Identities=33% Similarity=0.468 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhh-cCC--CceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 003450 290 QLEGLNFLRFSW-SKQ--THVILADEMGLGKTIQSIAFLASLFGER 332 (819)
Q Consensus 290 Q~~~v~~l~~~~-~~~--~~~iLade~GlGKT~~~i~~l~~l~~~~ 332 (819)
|.+.+..+.... ..+ .+.+|.++.|+|||..+-+++..+....
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~ 64 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPG 64 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTT
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 445556665554 333 2488999999999998887777665443
No 261
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=91.52 E-value=0.09 Score=47.42 Aligned_cols=37 Identities=27% Similarity=0.572 Sum_probs=27.8
Q ss_pred eEecCCCCccccccCcCCCC------CCCC-CCCcccCccCCCC
Q 003450 63 LMSCDTCTYAYHAKCLVPPL------KAPP-SGSWRCPECVSPL 99 (819)
Q Consensus 63 ~~~C~~C~~~~H~~c~~p~~------~~~~-~~~w~C~~c~~~~ 99 (819)
|+.||.|..+||..|..-.- ...| ...|.||.|....
T Consensus 2 mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 2 MMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred ccccccCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 78999999999999984321 2334 4579999998643
No 262
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.44 E-value=0.88 Score=47.05 Aligned_cols=47 Identities=15% Similarity=0.192 Sum_probs=30.3
Q ss_pred HHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcc
Q 003450 297 LRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (819)
Q Consensus 297 l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~l 344 (819)
+........+++|.+++|+|||..|-++..... ....|++.|-...+
T Consensus 18 ~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~-~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 18 IAMVAPSDATVLIHGDSGTGKELVARALHACSA-RSDRPLVTLNCAAL 64 (304)
T ss_dssp HHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS-CSSSCCCEEECSSC
T ss_pred HHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc-ccCCCeEEEeCCCC
Confidence 333335567899999999999988766655432 22346666644433
No 263
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.36 E-value=0.22 Score=51.37 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=27.1
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcc
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~l 344 (819)
..+++|.+++|+|||..+-+++..+ ..+++.+....+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l----~~~~i~v~~~~l 72 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM----GINPIMMSAGEL 72 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH----TCCCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCCEEEEeHHHh
Confidence 3567889999999999998888776 235665554443
No 264
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.28 E-value=1.3 Score=47.28 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=24.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 003450 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~ 340 (819)
..+|.++.|+|||..+-+++..+......+++.+-
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 68899999999999888777766443222444443
No 265
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.06 E-value=0.44 Score=47.89 Aligned_cols=38 Identities=24% Similarity=0.231 Sum_probs=26.9
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcc
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~l 344 (819)
...+.+|.+++|+|||..+-++...+ ..+++.+....+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~----~~~~~~~~~~~~ 75 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA----QVPFLAMAGAEF 75 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH----TCCEEEEETTTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----CCCEEEechHHH
Confidence 34578999999999999888777665 125555554443
No 266
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=90.95 E-value=0.25 Score=57.64 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=50.6
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC---CCCceEEEecC-cchHHHHHHHHHHc
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE---RISPHLVVAPL-STLRNWEREFATWA 356 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~---~~~~~LIv~P~-~ll~qW~~e~~~~~ 356 (819)
.|.|.|.++|. ...+..++.+..|+|||.+.+.-+.++... .+..+|+|+.+ ......++.+....
T Consensus 2 ~L~~~Q~~av~------~~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVE------FVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHH------CCSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHh------CCCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 48899999987 346778889999999999988888777653 33589999986 44555666676664
No 267
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.90 E-value=0.32 Score=52.48 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=27.8
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW 348 (819)
..+.+|.+++|+|||..|-+++..+ ..+++.|.+..+...|
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~----~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES----NATFFNISAASLTSKY 188 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT----TCEEEEECSCCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh----cCcEEEeeHHHhhccc
Confidence 5689999999999999887776553 2366666665555443
No 268
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=89.72 E-value=0.4 Score=45.17 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=40.2
Q ss_pred chhHHHHHHHHHHhh-----cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHH
Q 003450 287 HPYQLEGLNFLRFSW-----SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWE 349 (819)
Q Consensus 287 ~~~Q~~~v~~l~~~~-----~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~ 349 (819)
.+.|.+++..+.... ..+.+.+|.++.|+|||..+-+++..+.......++++....++..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 83 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLK 83 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 357888887775433 346778999999999999888877776522222444444333333333
No 269
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.25 E-value=0.73 Score=46.69 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=20.9
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
..+.+|.+++|+|||..|-++...+
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578899999999999988877764
No 270
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=89.25 E-value=0.27 Score=52.31 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=27.6
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcch
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll 345 (819)
..++.+|.+++|+|||..+-+++..+ ..+++.|....+.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~----~~~~~~i~~~~l~ 154 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS----GATFFSISASSLT 154 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT----TCEEEEEEGGGGC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc----CCeEEEEehHHhh
Confidence 45688999999999999888776654 2355555544433
No 271
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=89.10 E-value=0.18 Score=55.48 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=27.4
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW 348 (819)
..++.+|.+++|+|||..|-+++..+ ...+++.|....++..|
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~---~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA---NNSTFFSISSSDLVSKW 208 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC---CSSEEEEECCC------
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCCCEEEEeHHHHHhhh
Confidence 34688999999999999988877765 22356666555544333
No 272
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=88.81 E-value=0.41 Score=52.54 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=19.8
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l 328 (819)
.+.||.+++|+|||..+-++...+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999998887766654
No 273
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=88.69 E-value=0.53 Score=55.27 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=53.6
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-C--CCceEEEecCcc-hHHHHHHHHHHc----
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-R--ISPHLVVAPLST-LRNWEREFATWA---- 356 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~-~--~~~~LIv~P~~l-l~qW~~e~~~~~---- 356 (819)
.|.|.|.++|. ...+..++.+..|+|||.+.+.-+.++... + +..+|+|+.+.. .....+.+....
T Consensus 11 ~Ln~~Q~~av~------~~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~ 84 (724)
T 1pjr_A 11 HLNKEQQEAVR------TTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAA 84 (724)
T ss_dssp TSCHHHHHHHH------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGG
T ss_pred hCCHHHHHHHh------CCCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcccc
Confidence 58999999987 346778888899999999988888888753 3 347999999643 344555555543
Q ss_pred CCCeEEEEec
Q 003450 357 PQMNVVMYVG 366 (819)
Q Consensus 357 p~~~v~~~~g 366 (819)
.++.+..+|+
T Consensus 85 ~~~~v~Tfhs 94 (724)
T 1pjr_A 85 EDVWISTFHS 94 (724)
T ss_dssp TTSEEEEHHH
T ss_pred cCcEEeeHHH
Confidence 2345555544
No 274
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=88.38 E-value=0.41 Score=49.56 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=25.4
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~ 340 (819)
...+|.+++|+|||..|-++...+.... ++++.+-
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~-~~~~~~~ 82 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTE-EAMIRID 82 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCG-GGEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCC-cceEEee
Confidence 4688999999999999888777764432 3555443
No 275
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=88.33 E-value=0.61 Score=44.79 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=26.1
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEE
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv 339 (819)
.+.+|.+++|+|||..+.+++..+...+ .+++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~-~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRN-VSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTT-CCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEE
Confidence 6889999999999999888887775443 355444
No 276
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=87.96 E-value=0.57 Score=50.00 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=28.5
Q ss_pred chhHHHHHHHHHHhh---cCCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 287 HPYQLEGLNFLRFSW---SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 287 ~~~Q~~~v~~l~~~~---~~~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
|+.+++.+....... ..+...+|.++.|+|||..+-.++..+..
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555543322211 23557889999999999988777766543
No 277
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=87.60 E-value=0.35 Score=49.83 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=21.4
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
..++.+|.+++|+|||..+-++...+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 35788999999999999887776654
No 278
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.13 E-value=2.1 Score=41.38 Aligned_cols=54 Identities=11% Similarity=-0.025 Sum_probs=34.9
Q ss_pred HHHHHHH-hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCc--chHHHHH
Q 003450 293 GLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS--TLRNWER 350 (819)
Q Consensus 293 ~v~~l~~-~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~--ll~qW~~ 350 (819)
+++.+.. .+..+.-.+|.++.|+|||..+..++. . ..++++++.-.. ....|.+
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~--~~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L--SGKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H--HCSEEEEEESSCCCCHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H--cCCcEEEEECCCCCCHHHHHH
Confidence 4555543 345666788999999999988877766 1 224677766543 3344544
No 279
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=86.56 E-value=1.4 Score=50.36 Aligned_cols=58 Identities=24% Similarity=0.325 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-------------CCceEEEecCcchHH
Q 003450 290 QLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-------------ISPHLVVAPLSTLRN 347 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~-------------~~~~LIv~P~~ll~q 347 (819)
|..++..+......+...+|.++.|+|||..+-++...+.... ..|.+.++|.....+
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~ 116 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRR 116 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHH
Confidence 3444555555567788999999999999988877766543221 135666777655444
No 280
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=85.99 E-value=0.63 Score=51.65 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=25.5
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~ 340 (819)
....+.+|.+++|+|||..|-++...+ ..+++.|-
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~----~~~fv~vn 270 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET----GAFFFLIN 270 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC----SSEEEEEE
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh----CCCEEEEE
Confidence 455689999999999999887776543 23555544
No 281
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=85.56 E-value=2 Score=46.57 Aligned_cols=38 Identities=21% Similarity=0.115 Sum_probs=27.4
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~ 342 (819)
.-.++++..|+|||.++..++..+...+.+..||-++.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 34678899999999998888887766554444444453
No 282
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.88 E-value=0.32 Score=38.24 Aligned_cols=47 Identities=26% Similarity=0.538 Sum_probs=34.0
Q ss_pred cccccccccCCCC-eEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 50 KDDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 50 ~~~~C~~c~~~~~-~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
....|.+|...-. -..|..|...||..|+..=+.... .=.||.|...
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~--~~~CP~Cr~~ 61 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDY 61 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS--SCCCTTTCSC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC--CCCCCCCcCc
Confidence 4466999986432 467889999999999976554432 2369999854
No 283
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.22 E-value=0.79 Score=49.03 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=38.2
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~ 354 (819)
...+|++|.+++|+|||..|-|++..+ ..+++.|....++..|..|-.+
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~----~~~f~~v~~s~l~sk~vGese~ 228 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHT----DCKFIRVSGAELVQKYIGEGSR 228 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHH----TCEEEEEEGGGGSCSSTTHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhh----CCCceEEEhHHhhccccchHHH
Confidence 456899999999999999998888765 2378888888888777655433
No 284
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=84.19 E-value=5.2 Score=47.05 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=23.2
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
...+.+|.+++|+|||..+-+++..+..
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4567899999999999998888776643
No 285
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=84.07 E-value=7.9 Score=45.39 Aligned_cols=97 Identities=11% Similarity=0.079 Sum_probs=66.9
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHH----HHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEE
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHML----DLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~l----d~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L 681 (819)
.|||-....-.+......|.+++|.+.....+ +.+.+++...|+++..++|+++..+|...+....++..+ ++
T Consensus 399 GSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~---Iv 475 (780)
T 1gm5_A 399 GSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQID---VV 475 (780)
T ss_dssp SSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCC---EE
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCC---EE
Confidence 57887655444444445688999999886654 445555555689999999999999999999988775444 34
Q ss_pred ecc-ccccccCCcccCCEEEEeCCC
Q 003450 682 LST-RAGGLGINLATADTVIIYDSD 705 (819)
Q Consensus 682 ~st-~a~~~GinL~~a~~VI~~d~~ 705 (819)
++| ......+++...+.||+=+.+
T Consensus 476 VgT~~ll~~~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 476 IGTHALIQEDVHFKNLGLVIIDEQH 500 (780)
T ss_dssp EECTTHHHHCCCCSCCCEEEEESCC
T ss_pred EECHHHHhhhhhccCCceEEecccc
Confidence 444 334556677777777664443
No 286
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=84.07 E-value=1.1 Score=46.50 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=27.4
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHh-cCCCCceEEE
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLF-GERISPHLVV 339 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~-~~~~~~~LIv 339 (819)
+.+.+|.+++|+|||..+.+++..+. ..+ .+++++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g-~~v~~~ 187 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG-VSTTLL 187 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSC-CCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcC-CcEEEE
Confidence 57899999999999999988888776 544 344444
No 287
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=83.52 E-value=2.4 Score=44.97 Aligned_cols=56 Identities=13% Similarity=0.014 Sum_probs=41.2
Q ss_pred HHHHHHH--hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHH
Q 003450 293 GLNFLRF--SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWE 349 (819)
Q Consensus 293 ~v~~l~~--~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~ 349 (819)
+++.+.. .+..+.-.+|+++.|+|||..++.++......+ ++++++.......++.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g-~~vlyi~~E~s~~~~~ 118 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAG-GTCAFIDAEHALDPVY 118 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-CCEEEEESSCCCCHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCC-CeEEEEECCCChhHHH
Confidence 4555543 455667788999999999999998888765443 4888888876666663
No 288
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=83.47 E-value=3.8 Score=48.94 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=23.2
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
...+.+|.++.|+|||..+-+++..+..
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3457899999999999998888877644
No 289
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=83.46 E-value=4.7 Score=38.31 Aligned_cols=38 Identities=24% Similarity=0.185 Sum_probs=29.7
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P 341 (819)
..+..++....|.|||..|+++.......+ .+++|+--
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G-~rV~~vQF 64 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHG-KNVGVVQF 64 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTT-CCEEEEES
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEEe
Confidence 356788999999999999999888776554 37777743
No 290
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=83.43 E-value=1.9 Score=46.75 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=27.3
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P 341 (819)
.-.++++..|+|||.++..++.++...+.+..||-+.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3467899999999999999888887665434444444
No 291
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=83.15 E-value=3.8 Score=41.96 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=26.0
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P 341 (819)
+.-.++.+..|+|||.++..++..+......+++++.-
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 44567889999999998877777665322235555543
No 292
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.98 E-value=0.75 Score=49.88 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=36.6
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~ 352 (819)
...+|++|.+++|+|||..|-|++..+ ..+++.|....++..|..+-
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~----~~~f~~v~~s~l~~~~vGes 259 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQT----NATFLKLAAPQLVQMYIGEG 259 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH----TCEEEEEEGGGGCSSCSSHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHh----CCCEEEEehhhhhhcccchH
Confidence 346789999999999999998888765 23788888888777665443
No 293
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.57 E-value=0.81 Score=49.67 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=36.4
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~ 352 (819)
...+|.||.+++|+|||..|-+++..+ ..+++.|....++..|..+-
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~----~~~~~~v~~s~l~sk~~Ges 259 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI----GANFIFSPASGIVDKYIGES 259 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH----TCEEEEEEGGGTCCSSSSHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh----CCCEEEEehhhhccccchHH
Confidence 346899999999999999998888776 23778787777776665443
No 294
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=81.69 E-value=3.1 Score=43.79 Aligned_cols=55 Identities=11% Similarity=0.012 Sum_probs=38.9
Q ss_pred HHHHHHH--hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHH
Q 003450 293 GLNFLRF--SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (819)
Q Consensus 293 ~v~~l~~--~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW 348 (819)
+++.+.. .+..+.-.+|+++.|+|||..++.++......+ ++++++.-.....++
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g-~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG-GIAAFIDAEHALDPE 104 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-CCEEEEESSCCCCHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC-CeEEEEECCCCcCHH
Confidence 5555543 445666788999999999999988887765443 477777776555544
No 295
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=81.45 E-value=1.8 Score=53.97 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=43.2
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-----CCceEEEecC
Q 003450 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-----ISPHLVVAPL 342 (819)
Q Consensus 283 ~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~-----~~~~LIv~P~ 342 (819)
+.+|.+-|..+|. ..+++.++.+..|+|||.+.+.-+..+...+ ...+|+|+++
T Consensus 8 ~~~~t~eQ~~~i~------~~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft 66 (1232)
T 3u4q_A 8 DSTWTDDQWNAIV------STGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFT 66 (1232)
T ss_dssp --CCCHHHHHHHH------CCSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSS
T ss_pred CCCCCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEecc
Confidence 3579999999987 5578999999999999999888777776553 2389999996
No 296
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=81.22 E-value=1.8 Score=42.73 Aligned_cols=56 Identities=27% Similarity=0.349 Sum_probs=41.0
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHc
Q 003450 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (819)
Q Consensus 301 ~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~ 356 (819)
+..+.-.+|++++|+|||..++.++.........+++++.-.....+..+.+....
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~ 82 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFG 82 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTT
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcC
Confidence 35566789999999999999888876644444458888888766666666665543
No 297
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.89 E-value=0.35 Score=38.83 Aligned_cols=48 Identities=25% Similarity=0.502 Sum_probs=30.8
Q ss_pred cccccccccCCC----CeEe-c--CCCCccccccCcCCCCCCCCCCCcccCccCCCC
Q 003450 50 KDDSCQACGESE----NLMS-C--DTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (819)
Q Consensus 50 ~~~~C~~c~~~~----~~~~-C--~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~ 99 (819)
+...|.+|.... .++. | .++...||..|+..=+.. .+...||.|+...
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~--~~~~~CplCr~~~ 68 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS--SDTRCCELCKYEF 68 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH--HCCSBCSSSCCBC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh--CCCCCCCCCCCee
Confidence 345699998542 2432 2 333589999999654432 2346899999743
No 298
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.81 E-value=1.1 Score=48.22 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=37.1
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~ 353 (819)
...+|.||.+++|+|||..|-|++..+ ..+++.|....++..|..+-.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~----~~~fi~v~~s~l~sk~vGese 261 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQT----SATFLRIVGSELIQKYLGDGP 261 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHH----TCEEEEEESGGGCCSSSSHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHh----CCCEEEEEHHHhhhccCchHH
Confidence 346889999999999999998888775 237888888777776655443
No 299
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=80.57 E-value=0.13 Score=38.79 Aligned_cols=47 Identities=23% Similarity=0.363 Sum_probs=30.7
Q ss_pred cccccccccCCCC---eEec--CCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 50 KDDSCQACGESEN---LMSC--DTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 50 ~~~~C~~c~~~~~---~~~C--~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
+...|.+|..++. +..| .+.-+.+|..|+..=+.. .+.+.|+.|...
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~--~~~~~C~~C~~~ 56 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI--SRNTACQICGVV 56 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH--HTCSBCTTTCCB
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHh--CCCCccCCCCCe
Confidence 4467999975432 3444 333459999999654432 356899999864
No 300
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=80.14 E-value=5.5 Score=45.43 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=37.2
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCc
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ 343 (819)
+.+..-|.+++..+.... .+..+|.++-|.|||..+-.++..+. ..++|.+|+.
T Consensus 174 ~~~T~dQ~~al~~~~~~~--~~~~vlta~RGRGKSa~lG~~~a~~~----~~~~vtAP~~ 227 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMP--PGVAAVTAARGRGKSALAGQLISRIA----GRAIVTAPAK 227 (671)
T ss_dssp SSCCHHHHHHHHHHTTCC--SEEEEEEECTTSSHHHHHHHHHHHSS----SCEEEECSSC
T ss_pred CCCCHHHHHHHHHHHHhh--hCeEEEecCCCCCHHHHHHHHHHHHH----hCcEEECCCH
Confidence 467889999998774432 23468888999999955444444442 2468999963
No 301
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=79.81 E-value=2.7 Score=46.17 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=25.3
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~ 342 (819)
.++++|.+++|+|||..+-++...+ ..|++.+...
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~----~~~f~~is~~ 83 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA----NVPFFHISGS 83 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH----TCCEEEEEGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc----CCCeeeCCHH
Confidence 4678999999999999887776654 2355555443
No 302
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.76 E-value=1.1 Score=48.42 Aligned_cols=46 Identities=22% Similarity=0.184 Sum_probs=35.2
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWERE 351 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e 351 (819)
...+|.+|.+++|+|||..|-|++..+ ..+++.|....++..|..+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~----~~~~~~v~~~~l~~~~~Ge 249 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST----KAAFIRVNGSEFVHKYLGE 249 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH----TCEEEEEEGGGTCCSSCSH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh----CCCeEEEecchhhccccch
Confidence 456789999999999999998888776 2377777777777665433
No 303
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.52 E-value=1.1 Score=48.72 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=36.6
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~ 352 (819)
...+|.||.+++|+|||..|-+++..+ ..+++.|....++..|..+-
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~----~~~fi~vs~s~L~sk~vGes 287 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT----DATFIRVIGSELVQKYVGEG 287 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH----TCEEEEEEGGGGCCCSSSHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc----CCCeEEEEhHHhhcccCCHH
Confidence 457899999999999999998888765 23778888777776665443
No 304
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=79.15 E-value=4.9 Score=41.55 Aligned_cols=62 Identities=10% Similarity=0.132 Sum_probs=45.5
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHH
Q 003450 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (819)
Q Consensus 293 ~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~ 355 (819)
+++.+...+..+.-++|++.+|+|||..++.++......+ .+++++.......+....+...
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-~~vl~~slE~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND-DVVNLHSLEMGKKENIKRLIVT 118 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT-CEEEEEESSSCHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEECCCCHHHHHHHHHHH
Confidence 4555544566777799999999999999888887765544 6899998876666666555443
No 305
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=77.15 E-value=3.5 Score=45.43 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=44.1
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEEEE
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMY 364 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~~~ 364 (819)
.+....|.+-+|+|||+++.+++.. ..+|+|||+|+ ....+|.+++..|+|+. |..|
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~~~----~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~f 70 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIAER----HAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNL 70 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHHHH----SSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEEC
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHH----hCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEE
Confidence 3456788999999999987776654 24599999997 66688999999998764 4444
No 306
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=76.91 E-value=1.4 Score=31.94 Aligned_cols=44 Identities=23% Similarity=0.445 Sum_probs=30.9
Q ss_pred ccccccccCC---C-CeEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 51 DDSCQACGES---E-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 51 ~~~C~~c~~~---~-~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
...|.+|.+. + .......|+-.||..|+..-+.. ...||.|+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~ 52 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLT 52 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCC
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCE
Confidence 3469999754 2 24555579999999999765543 3479999853
No 307
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=76.54 E-value=4.5 Score=44.16 Aligned_cols=61 Identities=11% Similarity=-0.018 Sum_probs=44.7
Q ss_pred HHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHH
Q 003450 292 EGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (819)
Q Consensus 292 ~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~ 352 (819)
..++.+...+..+.-.+|++.+|+|||..++.++.........|++++.......++...+
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~ 248 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRM 248 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHH
Confidence 3455555556677778999999999999998888876544345888888876666665554
No 308
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=76.11 E-value=12 Score=42.17 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=60.6
Q ss_pred HHHHHHHHHH-hcCceEEEEecchhHHHHHHHHHhhCCCeEEEEecc-CChHHHHHHHHHhcCCCCCcEEEEecc--ccc
Q 003450 612 LLDKMMVKLK-EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGK-VGGAERQIRIDRFNAKNSSRFCFLLST--RAG 687 (819)
Q Consensus 612 ~l~~ll~~l~-~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~-~~~~~R~~~i~~F~~~~~~~~v~L~st--~a~ 687 (819)
.+.+.+..+. ..+..+|||..+...++.+.+ ..+.++. ..|. ++ +.++++.|.... +. +|+++ ...
T Consensus 380 ~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~---~~~~~v~-~q~~~~~---~~~~~~~~~~~~-~~--vl~~v~gg~~ 449 (551)
T 3crv_A 380 RYADYLLKIYFQAKANVLVVFPSYEIMDRVMS---RISLPKY-VESEDSS---VEDLYSAISANN-KV--LIGSVGKGKL 449 (551)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESCHHHHHHHHT---TCCSSEE-ECCSSCC---HHHHHHHTTSSS-SC--EEEEESSCCS
T ss_pred HHHHHHHHHHHhCCCCEEEEecCHHHHHHHHH---hcCCcEE-EcCCCCC---HHHHHHHHHhcC-Ce--EEEEEeccee
Confidence 3444444433 345688888888777777665 2344433 3332 23 456788886433 22 45554 789
Q ss_pred cccCCcc---c--CCEEEEeCCCCCcchHHHHhHhhhh
Q 003450 688 GLGINLA---T--ADTVIIYDSDWNPHADLQAMARAHR 720 (819)
Q Consensus 688 ~~GinL~---~--a~~VI~~d~~wnp~~~~Qa~gR~~R 720 (819)
.+|||++ + +..||+.-.|+-+. +-....|...
T Consensus 450 ~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~ 486 (551)
T 3crv_A 450 AEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQR 486 (551)
T ss_dssp CCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHH
T ss_pred cccccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHH
Confidence 9999999 3 78999999888555 4444444433
No 309
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=76.10 E-value=2 Score=47.21 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=32.0
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW 348 (819)
.+++.+|.+++|+|||..|-+++..+-.. .+++.+....+...|
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~--~~~~~~~~~~~~~~~ 105 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSK--VPFCPMVGSEVYSTE 105 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTT--SCEEEEEGGGGCCSS
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCC--ceEEEEeHHHHHHHh
Confidence 44689999999999999999888876321 366666665555443
No 310
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=75.91 E-value=7.1 Score=40.51 Aligned_cols=52 Identities=17% Similarity=0.055 Sum_probs=35.6
Q ss_pred HHHHHH-HhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-----CCceEEEecCcc
Q 003450 293 GLNFLR-FSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-----ISPHLVVAPLST 344 (819)
Q Consensus 293 ~v~~l~-~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~-----~~~~LIv~P~~l 344 (819)
+++.+. -.+..+.-.+|+++.|+|||..++.++....... .++++++.-...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 444443 2345666788999999999999988887653321 347788777654
No 311
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=74.56 E-value=0.76 Score=39.90 Aligned_cols=37 Identities=30% Similarity=0.629 Sum_probs=29.2
Q ss_pred cccccccccCCCCeEecCCCCccccccCcCCCCCCCCCCCcccCccCC
Q 003450 50 KDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 50 ~~~~C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
...+|.+|++.+ |+.|...||+.|+.++ .|.|..|..
T Consensus 6 rC~~C~~C~~~~----C~~C~~c~~~~~~~~~-------~~~~~~c~~ 42 (117)
T 4bbq_A 6 RCRKCKACVQGE----CGVCHYCRDMKKFGGP-------GRMKQSCVL 42 (117)
T ss_dssp CCSCSHHHHSCC----CSCSHHHHHSGGGTSC-------CCSCCCCGG
T ss_pred cCCcCcCcCCcC----CCCCCCCcCCcccCCC-------Cccccchhh
Confidence 467899998764 9999999999999654 477777753
No 312
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=73.49 E-value=3.4 Score=39.61 Aligned_cols=24 Identities=13% Similarity=0.357 Sum_probs=20.8
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l 328 (819)
++.++.++.|+|||..|.+++..+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 357889999999999998888776
No 313
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=72.33 E-value=6.3 Score=42.95 Aligned_cols=62 Identities=10% Similarity=0.132 Sum_probs=46.1
Q ss_pred HHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHH
Q 003450 292 EGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (819)
Q Consensus 292 ~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~ 354 (819)
.+++.+...+..+.-.+|++.+|.|||..++.++...... ..+++++.-..-..+....+..
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlEms~~ql~~R~~~ 246 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLEMGKKENIKRLIV 246 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSSSCTTHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECCCCHHHHHHHHHH
Confidence 3555555556777789999999999999999888877654 3489999887666666655543
No 314
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=72.06 E-value=5.9 Score=43.36 Aligned_cols=60 Identities=10% Similarity=0.125 Sum_probs=43.5
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHH
Q 003450 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (819)
Q Consensus 293 ~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~ 352 (819)
+++.+...+..|.-++|++++|+|||..++.++..+......+++++.......+....+
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~ 251 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRM 251 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHH
Confidence 455555556777788999999999999988888776543334889888765555555443
No 315
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.95 E-value=0.65 Score=36.53 Aligned_cols=46 Identities=33% Similarity=0.618 Sum_probs=31.4
Q ss_pred cccccccccC---CCCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCCC
Q 003450 50 KDDSCQACGE---SENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (819)
Q Consensus 50 ~~~~C~~c~~---~~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~ 99 (819)
....|.+|.. .++.+..-.|.-.||..|+..-+.. ...||.|+...
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~~ 70 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRADS 70 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCcC
Confidence 3456999984 3444444569999999999654432 24799998654
No 316
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=71.54 E-value=6.2 Score=40.60 Aligned_cols=45 Identities=13% Similarity=0.017 Sum_probs=33.7
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEecCcchHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRN 347 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~-~~~~LIv~P~~ll~q 347 (819)
..+ -.+|+++.|+|||..++.++......+ .++++.|.....+.+
T Consensus 27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP 72 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH
T ss_pred cCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH
Confidence 344 578999999999999998888776542 357888888655544
No 317
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=71.53 E-value=2.1 Score=44.58 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 293 ~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
.+..+......+++.+|.+++|+|||..+-++...+
T Consensus 35 ~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 35 MINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 334444444567899999999999998887776654
No 318
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=70.49 E-value=0.65 Score=35.82 Aligned_cols=44 Identities=20% Similarity=0.469 Sum_probs=29.5
Q ss_pred ccccccccCC---CCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 51 DDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 51 ~~~C~~c~~~---~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
...|.+|... +..+..-.|+-.||..|+..-+.. ...||.|+..
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~ 60 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----NKKCPICRVD 60 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCSB
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----CCCCcCcCcc
Confidence 4569999643 334444569999999999654432 2259999854
No 319
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=70.28 E-value=1.7 Score=42.97 Aligned_cols=47 Identities=26% Similarity=0.552 Sum_probs=34.4
Q ss_pred cccccccccCCCC-eEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 50 KDDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 50 ~~~~C~~c~~~~~-~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
.-..|.+|.+--. -..|..|+..||..|+.--+.. .+.=.||.|...
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~--~~~~~CP~C~~~ 226 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQS--NAEPRCPHCNDY 226 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTT--CSSCBCTTTCCB
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHh--CCCCCCCCCCCC
Confidence 3567999986432 4889999999999999654443 334469999864
No 320
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=69.75 E-value=7.3 Score=38.16 Aligned_cols=53 Identities=26% Similarity=0.220 Sum_probs=38.0
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHH
Q 003450 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (819)
Q Consensus 301 ~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~ 354 (819)
+..+.-.+|+++.|+|||..++.++...... .++++++.-.....+..+.+..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~~e~~~~~~~~~~~~ 72 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVALEEHPVQVRQNMAQ 72 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEESSSCHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccCCHHHHHHHHHH
Confidence 4566678899999999999988887776543 3478888776555555555443
No 321
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=69.60 E-value=5.9 Score=51.06 Aligned_cols=53 Identities=13% Similarity=0.030 Sum_probs=39.4
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHc
Q 003450 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (819)
Q Consensus 301 ~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~ 356 (819)
+..+.+++|.+++|+|||..|++++......+ .+++++.....+.+-. ...+.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G-~~v~Fi~~e~~~~~l~--a~~~G 1476 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREG-KTCAFIDAEHALDPIY--ARKLG 1476 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTT-CCEEEECTTSCCCHHH--HHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CcEEEEEcccccCHHH--HHHcC
Confidence 45788999999999999999999988776543 4778888776554433 44443
No 322
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=69.58 E-value=2.3 Score=33.49 Aligned_cols=46 Identities=28% Similarity=0.622 Sum_probs=30.3
Q ss_pred cccccccccCC---CCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCCC
Q 003450 50 KDDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (819)
Q Consensus 50 ~~~~C~~c~~~---~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~ 99 (819)
....|.+|... +..+.--.|.-.||..|+..-+.. .-.||.|+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~ 62 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSL 62 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----TCSCTTTCCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----CCcCcCcCCcc
Confidence 34569999754 233322358889999999655432 24799998643
No 323
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=69.49 E-value=1.5 Score=35.61 Aligned_cols=29 Identities=24% Similarity=0.696 Sum_probs=23.8
Q ss_pred ccccccccCC--CCeEecCC--CCccccccCcC
Q 003450 51 DDSCQACGES--ENLMSCDT--CTYAYHAKCLV 79 (819)
Q Consensus 51 ~~~C~~c~~~--~~~~~C~~--C~~~~H~~c~~ 79 (819)
...|.+|++. |.-+.|.. |...||..|-.
T Consensus 17 ~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 17 KLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHH
T ss_pred cCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHH
Confidence 3569999853 78899975 99999999974
No 324
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=69.18 E-value=8.8 Score=39.97 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=43.1
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHH
Q 003450 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (819)
Q Consensus 293 ~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~ 352 (819)
.++.+...+..+.-.+|++.+|.|||..++.++..+.. ...+++++.......+....+
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSlEms~~ql~~Rl 93 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSLEMSAEQLALRA 93 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEESSSCHHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCCCCHHHHHHHH
Confidence 44455455677777899999999999998888877654 335889988876666655544
No 325
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=69.15 E-value=19 Score=39.78 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=23.9
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P 341 (819)
.++++|.++.|+|||..+-++...+ ..+++.+..
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~----~~~~i~i~g 97 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEA----RVPFITASG 97 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT----TCCEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh----CCCEEEEeh
Confidence 4578999999999998877666543 135554443
No 326
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=68.43 E-value=4.6 Score=48.25 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=24.8
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEE
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv 339 (819)
...+|.+++|+|||..|-++...+...+ .+++.|
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~-~~~i~i 622 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTE-EAMIRI 622 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSG-GGEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCC-CcEEEE
Confidence 3678999999999999888877765432 244443
No 327
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=68.06 E-value=4 Score=41.77 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=22.0
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
...+.+|.+++|+|||..+-++...+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999888777766
No 328
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=67.89 E-value=4.2 Score=41.76 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=27.1
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCc
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ 343 (819)
..+++.+|.+++|+|||..+-+++..+ ..+++.|-...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~----~~~~i~v~~~~ 84 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISIKGPE 84 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT----TCEEEEECHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh----CCCEEEEEhHH
Confidence 456789999999999999887777654 13555544333
No 329
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=67.49 E-value=7.6 Score=28.25 Aligned_cols=44 Identities=23% Similarity=0.483 Sum_probs=28.3
Q ss_pred ccccccccccCCCCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCCC
Q 003450 49 AKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (819)
Q Consensus 49 ~~~~~C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~ 99 (819)
.+...|.+|.+.-.--.--.|+-.|+..|+.. ..-.||.|+...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~-------~~~~CP~Cr~~~ 47 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA-------SGMQCPICQAPW 47 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS-------SSSSCSSCCSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc-------CCCCCCcCCcEe
Confidence 34567999986533111224887888889854 244799998643
No 330
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=66.75 E-value=4.8 Score=41.63 Aligned_cols=44 Identities=9% Similarity=-0.043 Sum_probs=30.9
Q ss_pred chhHHHHHH-HHHHhh--cCCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 287 HPYQLEGLN-FLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 287 ~~~Q~~~v~-~l~~~~--~~~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
|+-|...+. +|.... ..+.+.+|.+++|+|||.++-.++..+..
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455655554 333333 24556889999999999999998888754
No 331
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=66.29 E-value=6.7 Score=41.39 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=26.5
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~ 342 (819)
...+.+|.+++|+|||..|-++...+ ..|++.+-..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~----~~~~~~~~~~ 85 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL----DVPFTMADAT 85 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT----TCCEEEEEHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc----CCCEEEechH
Confidence 45689999999999999888777665 2366555443
No 332
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=66.23 E-value=5.4 Score=31.95 Aligned_cols=33 Identities=36% Similarity=0.916 Sum_probs=27.0
Q ss_pred eEecCCCC-ccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 63 LMSCDTCT-YAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 63 ~~~C~~C~-~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
|+.|..|. .+-|..|. .+.. ....|.|..|...
T Consensus 46 L~lC~~Cgs~gtH~~Cs--~l~~-~~~~weC~~C~~v 79 (85)
T 1weq_A 46 LILCATCGSHGTHRDCS--SLRP-NSKKWECNECLPA 79 (85)
T ss_dssp CEECSSSCCCEECSGGG--TCCT-TCSCCCCTTTSCC
T ss_pred EEeCcccCCchhHHHHh--CCcC-CCCCEECCcCccc
Confidence 99999996 66999999 4432 4678999999853
No 333
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=65.80 E-value=7.7 Score=43.03 Aligned_cols=59 Identities=3% Similarity=-0.124 Sum_probs=43.2
Q ss_pred HHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHH
Q 003450 294 LNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (819)
Q Consensus 294 v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~ 352 (819)
++.+...+..+.-.+|++++|+|||..++.++.........+++++.-.....+....+
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~ 290 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDL 290 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHH
Confidence 34444455677778999999999999999998887654345888888766555655544
No 334
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=65.29 E-value=8.3 Score=38.25 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=20.6
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
..+.+|.+++|+|||..+-++...+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 5578999999999998887776654
No 335
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A
Probab=64.90 E-value=1.7 Score=33.15 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=18.1
Q ss_pred hhhhhhhccCCCcccccccChHHHH
Q 003450 130 VKQYLVKWKGLSYLHCTWVPEKEFL 154 (819)
Q Consensus 130 ~~eylVKw~~~s~~h~~W~~~~~l~ 154 (819)
...|||||+|.+.. .|+|..++.
T Consensus 27 el~fLvKWKg~~~~--d~Vpa~e~n 49 (65)
T 3kup_A 27 ELMFLMKWKDSDEA--DLVLAKEAN 49 (65)
T ss_dssp SCEEEEEETTCSCC--EEEEHHHHH
T ss_pred cEEEEEEECCCChh--heEEHHHHH
Confidence 47899999999854 488877664
No 336
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=64.49 E-value=7.3 Score=37.89 Aligned_cols=44 Identities=16% Similarity=0.133 Sum_probs=31.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe-cCcchHHHH
Q 003450 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVA-PLSTLRNWE 349 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~-P~~ll~qW~ 349 (819)
+.++....|.|||..++.+...+...+..-.++.+ |..-...|.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~a 52 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEA 52 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHH
Confidence 67899999999999999999988877654334444 333444444
No 337
>1e0b_A SWI6 protein; chromatin-binding, chromodomain, shadow, heterochromatin; HET: 1PG; 1.9A {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=64.29 E-value=1.3 Score=33.96 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=21.6
Q ss_pred chhhhHhhhhc-CCcceeeEeeeccc
Q 003450 192 TTVDRILACRG-EDDEKEYLVKYKEL 216 (819)
Q Consensus 192 ~~~eril~~~~-~~~~~~~lvKw~~l 216 (819)
..|++|++... .+|+..||+||++-
T Consensus 11 ~~Ve~I~g~~~~~~g~L~flikwk~~ 36 (68)
T 1e0b_A 11 DLVSSIDTIERKDDGTLEIYLTWKNG 36 (68)
T ss_dssp TTEEEEEEEEECTTSCEEEEEEETTS
T ss_pred hheeEEEEEEECCCCEEEEEEEECCC
Confidence 46889998887 88899999999974
No 338
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=64.25 E-value=0.96 Score=46.44 Aligned_cols=47 Identities=34% Similarity=0.659 Sum_probs=30.5
Q ss_pred ccccccccCC----CC--eEecC--CCCccccccCcCCCCCCCCCC-------CcccCccCC
Q 003450 51 DDSCQACGES----EN--LMSCD--TCTYAYHAKCLVPPLKAPPSG-------SWRCPECVS 97 (819)
Q Consensus 51 ~~~C~~c~~~----~~--~~~C~--~C~~~~H~~c~~p~~~~~~~~-------~w~C~~c~~ 97 (819)
...|.+|-.. |. ...|+ .|...||..|+..=+...+.+ .=.||.|+.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~ 369 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKA 369 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCC
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCC
Confidence 3458888732 33 46798 899999999996543222211 124999986
No 339
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.01 E-value=2 Score=34.40 Aligned_cols=31 Identities=26% Similarity=0.570 Sum_probs=22.9
Q ss_pred ecCCCCccccccCcCCCCCCCCCCCcccCccCCCC
Q 003450 65 SCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (819)
Q Consensus 65 ~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~ 99 (819)
.-..|.-.||..|+..=+... -.||.|+...
T Consensus 44 ~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~~ 74 (81)
T 2ecl_A 44 VWGECNHSFHNCCMSLWVKQN----NRCPLCQQDW 74 (81)
T ss_dssp EEETTSCEEEHHHHHHHTTTC----CBCTTTCCBC
T ss_pred EeCCCCCccChHHHHHHHHhC----CCCCCcCCCc
Confidence 334699999999997765543 2799998643
No 340
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=63.32 E-value=1.7 Score=35.63 Aligned_cols=45 Identities=22% Similarity=0.504 Sum_probs=30.5
Q ss_pred cccccccccCC---CCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 50 KDDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 50 ~~~~C~~c~~~---~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
....|.+|... ++.+..-.|+-.||..|+..-+.. .-.||.|+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 86 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----SGTCPVCRCM 86 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----TCBCTTTCCB
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----CCcCcCcCcc
Confidence 45679999743 333333349999999999765433 2379999864
No 341
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=63.21 E-value=3.2 Score=48.63 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=28.3
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWE 349 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~ 349 (819)
..+|++|.++.|+|||..|=+++..+ ..+++.|-...++..|.
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~el----g~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANET----GAFFFLINGPEIMSKLA 279 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTT----TCEEEEEEHHHHHSSCT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh----CCeEEEEEhHHhhcccc
Confidence 35689999999999998876665433 22555555444444443
No 342
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=62.68 E-value=10 Score=36.50 Aligned_cols=56 Identities=23% Similarity=0.246 Sum_probs=35.1
Q ss_pred HHHHHHH-hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHH
Q 003450 293 GLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWE 349 (819)
Q Consensus 293 ~v~~l~~-~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~ 349 (819)
+++.+.. .+..+.-.+|.++.|+|||..+..++..+... .++++++.......+..
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~v~~~~~~~~~~~~~ 67 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD-GDPCIYVTTEESRDSII 67 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH-TCCEEEEESSSCHHHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC-CCeEEEEEcccCHHHHH
Confidence 3444433 34566678899999999998887777555432 24677766544443333
No 343
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=62.25 E-value=22 Score=38.00 Aligned_cols=94 Identities=13% Similarity=0.085 Sum_probs=63.3
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhh---CCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEe
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLL 682 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~ 682 (819)
.+||-....-.+......+.++||.+.....+.-+.+.+.. .|+++..++|+.+..++...+..+..++.. +++.
T Consensus 46 GsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~--Iiv~ 123 (414)
T 3oiy_A 46 GVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH--ILVF 123 (414)
T ss_dssp SSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCS--EEEE
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCC--EEEE
Confidence 68887754444444446788999999998887777777765 688999999999998888888887664333 2344
Q ss_pred ccccccc---cCCcccCCEEEE
Q 003450 683 STRAGGL---GINLATADTVII 701 (819)
Q Consensus 683 st~a~~~---GinL~~a~~VI~ 701 (819)
++..... -+++...+.||+
T Consensus 124 Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 124 STQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp EHHHHHHCHHHHTTCCCSEEEE
T ss_pred CHHHHHHHHHHhccccccEEEE
Confidence 4433311 134445565555
No 344
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=62.17 E-value=8.4 Score=38.45 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=21.7
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
...+.+|.+++|+|||..+-++...+
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 35678999999999999988877665
No 345
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=61.35 E-value=1.6 Score=31.55 Aligned_cols=44 Identities=30% Similarity=0.657 Sum_probs=30.8
Q ss_pred ccccccccCC----CCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 51 DDSCQACGES----ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 51 ~~~C~~c~~~----~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
...|.+|.+. +.....-.|.-.||..|+..-+... ..||.|+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~ 52 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSGP 52 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT----CCCTTSCCS
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC----CcCCCCCCc
Confidence 4569999864 2345666799999999996543321 579999854
No 346
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=59.22 E-value=26 Score=36.02 Aligned_cols=36 Identities=22% Similarity=0.100 Sum_probs=26.2
Q ss_pred HHHHHHH-hhcCCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 293 GLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 293 ~v~~l~~-~~~~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
+++.+.. .+..+.-.+|+++.|+|||..++.++...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4444432 34556668899999999999998888763
No 347
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=59.08 E-value=6.2 Score=39.50 Aligned_cols=22 Identities=23% Similarity=0.125 Sum_probs=19.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHH
Q 003450 306 HVILADEMGLGKTIQSIAFLAS 327 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~ 327 (819)
+.+|.++.|+|||..+.+++..
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999888775
No 348
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=59.03 E-value=19 Score=36.46 Aligned_cols=52 Identities=6% Similarity=-0.094 Sum_probs=34.5
Q ss_pred HHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHH
Q 003450 297 LRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (819)
Q Consensus 297 l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW 348 (819)
+...+..|.-.+|+++.|+|||..+..++..+......+++++.......+.
T Consensus 28 i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~ 79 (296)
T 1cr0_A 28 KTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEET 79 (296)
T ss_dssp HHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHH
T ss_pred HhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHH
Confidence 3344567777889999999999887777666544322367777654333333
No 349
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=58.63 E-value=6.7 Score=31.08 Aligned_cols=13 Identities=31% Similarity=1.135 Sum_probs=10.2
Q ss_pred CCCcccCccCCCC
Q 003450 87 SGSWRCPECVSPL 99 (819)
Q Consensus 87 ~~~w~C~~c~~~~ 99 (819)
..+|.||.|....
T Consensus 58 PddW~CPvCga~K 70 (81)
T 2kn9_A 58 PDDWSCPDCGAAK 70 (81)
T ss_dssp CTTCCCTTTCCCG
T ss_pred CCCCcCCCCCCCH
Confidence 3579999998754
No 350
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=58.35 E-value=10 Score=46.98 Aligned_cols=50 Identities=22% Similarity=0.162 Sum_probs=37.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCC--CCceEEEecCcchHHHHHHHHHHcC
Q 003450 308 ILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNWEREFATWAP 357 (819)
Q Consensus 308 iLade~GlGKT~~~i~~l~~l~~~~--~~~~LIv~P~~ll~qW~~e~~~~~p 357 (819)
++.+..|+|||.+.+.-+.++...+ +.++|++||+....+-+..+....+
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~l~ 56 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTPD 56 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCCSS
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHhhh
Confidence 4556789999999988888876543 3589999999887776666665543
No 351
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=58.20 E-value=5.2 Score=44.27 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=26.3
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 293 ~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
.+..+......+++.+|.+++|+|||..|-++...+
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 344444445678899999999999998776665544
No 352
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=58.14 E-value=15 Score=37.63 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=21.6
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
...+.+|.++.|+|||..+-++...+
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999888777655
No 353
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=58.03 E-value=5.7 Score=27.75 Aligned_cols=34 Identities=26% Similarity=0.740 Sum_probs=18.7
Q ss_pred EecCCCCccccccCcCC-CCCCCCCCCcccCccCCC
Q 003450 64 MSCDTCTYAYHAKCLVP-PLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 64 ~~C~~C~~~~H~~c~~p-~~~~~~~~~w~C~~c~~~ 98 (819)
-.|..|+..|...=-+| +..+. ..+|.||.|...
T Consensus 5 y~C~vCGyvyd~~~Gd~t~f~~l-P~dw~CP~Cg~~ 39 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDNVPFDQL-PDDWCCPVCGVS 39 (46)
T ss_dssp EEETTTCCEECGGGGTTCCGGGS-CTTCBCTTTCCB
T ss_pred EECCCCCeEEeCCcCCCcchhhC-CCCCcCcCCCCc
Confidence 35666666664321111 22233 456999999863
No 354
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.98 E-value=5.5 Score=30.70 Aligned_cols=48 Identities=19% Similarity=0.544 Sum_probs=32.9
Q ss_pred cccccccccCCCC-eEecCCCCccccccCcCCCCCCCCCCCcccCccCCCC
Q 003450 50 KDDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (819)
Q Consensus 50 ~~~~C~~c~~~~~-~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~ 99 (819)
+...|.+|.+.-. .+.. .|+-.||..|+..-+.. ..+.-.||.|....
T Consensus 19 ~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~-~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTI-DCGHNFCLKCITQIGET-SCGFFKCPLCKTSV 67 (73)
T ss_dssp CCCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCSS-SCSCCCCSSSCCCC
T ss_pred cCCEeccCCcccCCeEEc-CCCChhhHHHHHHHHHc-CCCCCCCCCCCCcC
Confidence 3467999986543 2222 79999999999765542 23456899998643
No 355
>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2
Probab=57.94 E-value=2.5 Score=33.17 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=18.3
Q ss_pred hhhhhhhccCCCcccccccChHHHH
Q 003450 130 VKQYLVKWKGLSYLHCTWVPEKEFL 154 (819)
Q Consensus 130 ~~eylVKw~~~s~~h~~W~~~~~l~ 154 (819)
...|||||+|.+.. .|+|..++.
T Consensus 37 el~fLVKWKg~~e~--dlVpa~ean 59 (75)
T 3i3c_A 37 DLMFLMKWKDTDEA--DLVLAKEAN 59 (75)
T ss_dssp CCEEEEEETTSSCE--EEEEHHHHH
T ss_pred cEEEEEEECCCChh--ceEEHHHHh
Confidence 47899999999864 488877764
No 356
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=57.12 E-value=14 Score=38.17 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=20.0
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLAS 327 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~ 327 (819)
..+.+|.++.|+|||..+-++...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357999999999999988777554
No 357
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.58 E-value=3.4 Score=31.85 Aligned_cols=45 Identities=18% Similarity=0.353 Sum_probs=30.7
Q ss_pred cccccccccCCCC-eEecCCCCccccccCcCCCCCCCCCCCcccCccCCCC
Q 003450 50 KDDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (819)
Q Consensus 50 ~~~~C~~c~~~~~-~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~ 99 (819)
+...|.+|.+.-. .+.. .|.-.||..|+..-+.. .-.||.|+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~ 59 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSL-PCKHVFCYLCVKGASWL----GKRCALCRQEI 59 (71)
T ss_dssp SCCBCSSSSSBCSSEEEE-TTTEEEEHHHHHHCTTC----SSBCSSSCCBC
T ss_pred CCCCCccCCcccCCCEEc-cCCCHHHHHHHHHHHHC----CCcCcCcCchh
Confidence 3466999986533 2222 59999999999655433 25899998643
No 358
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=56.48 E-value=2.3 Score=36.40 Aligned_cols=34 Identities=29% Similarity=0.663 Sum_probs=23.6
Q ss_pred cCCCCccccccCcCCCCCCC-CCCCcccCccCCCC
Q 003450 66 CDTCTYAYHAKCLVPPLKAP-PSGSWRCPECVSPL 99 (819)
Q Consensus 66 C~~C~~~~H~~c~~p~~~~~-~~~~w~C~~c~~~~ 99 (819)
...|.-.||..|+..-+... +...-.||.|+...
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred cCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 45689999999997654221 13455899998644
No 359
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=56.42 E-value=3.1 Score=32.41 Aligned_cols=54 Identities=20% Similarity=0.454 Sum_probs=34.8
Q ss_pred cccccccccCCCC-eEecCCCCccccccCcCCCCCCCCCCCcccCccCCCCcccccc
Q 003450 50 KDDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKI 105 (819)
Q Consensus 50 ~~~~C~~c~~~~~-~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~~~~~~i 105 (819)
+...|.+|...-. -+.-..|+-.||..|+..-+.. .+.-.||.|+......+.+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE--SDEHTCPTCHQNDVSPDAL 68 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHH--SSSSCCSSSCCSSCCTTTT
T ss_pred CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHh--cCCCcCCCCCCcCCCcccc
Confidence 4567999986532 3334459999999999665533 2345799999754433333
No 360
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Probab=55.13 E-value=3.3 Score=32.43 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=20.0
Q ss_pred hhhhhhhccCCCcccccccChHHHHH
Q 003450 130 VKQYLVKWKGLSYLHCTWVPEKEFLK 155 (819)
Q Consensus 130 ~~eylVKw~~~s~~h~~W~~~~~l~~ 155 (819)
...|||||+|... .+|+|..++..
T Consensus 30 el~fLvkWkg~d~--~dlVpa~~a~~ 53 (74)
T 2fmm_A 30 ELMFLMKWKNSDE--ADLVPAKEANV 53 (74)
T ss_dssp EEEEEEEETTCSC--CEEEEHHHHHH
T ss_pred cEEEEEEECCCCc--ccEEEHHHHhh
Confidence 4699999999885 67999998754
No 361
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=54.81 E-value=11 Score=35.82 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=18.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHH
Q 003450 306 HVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l 328 (819)
-.++.+.+|+|||..|+..+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 35789999999999988876554
No 362
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=54.66 E-value=8.6 Score=35.76 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=20.9
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
....+|.+.+|+|||.++-.+...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999887777665
No 363
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=53.73 E-value=13 Score=26.73 Aligned_cols=13 Identities=31% Similarity=1.009 Sum_probs=10.1
Q ss_pred CCCcccCccCCCC
Q 003450 87 SGSWRCPECVSPL 99 (819)
Q Consensus 87 ~~~w~C~~c~~~~ 99 (819)
..+|.||.|....
T Consensus 34 P~dw~CP~Cg~~K 46 (52)
T 1e8j_A 34 PDDWACPVCGASK 46 (52)
T ss_dssp CTTCCCSSSCCCT
T ss_pred CCCCcCCCCCCcH
Confidence 4579999998643
No 364
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=53.65 E-value=2.8 Score=31.93 Aligned_cols=46 Identities=22% Similarity=0.531 Sum_probs=31.3
Q ss_pred ccccccccCCCC-eEecCCCCccccccCcCCCCCCCCCCCcccCccCCCCc
Q 003450 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLN 100 (819)
Q Consensus 51 ~~~C~~c~~~~~-~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~~ 100 (819)
...|.+|.+.-. -...-.|+-.||..|+..-+.. .-.||.|+....
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ----NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH----SCSTTTTCCCCC
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC----cCcCcCCChhhH
Confidence 456999987643 2345569999999999653321 247999986543
No 365
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.50 E-value=2 Score=33.04 Aligned_cols=45 Identities=18% Similarity=0.448 Sum_probs=31.3
Q ss_pred ccccccccCCCCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCCCc
Q 003450 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLN 100 (819)
Q Consensus 51 ~~~C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~~ 100 (819)
...|.+|.+.-.. .--.|.-.||..|+..-+. ....||.|+....
T Consensus 15 ~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 15 EEECCICMDGRAD-LILPCAHSFCQKCIDKWSD----RHRNCPICRLQMT 59 (70)
T ss_dssp CCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC----CCSSCHHHHHCTT
T ss_pred CCCCeeCCcCccC-cccCCCCcccHHHHHHHHH----CcCcCCCcCCccc
Confidence 4569999865433 3346888899999976444 4567999986443
No 366
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=53.10 E-value=48 Score=27.24 Aligned_cols=47 Identities=11% Similarity=0.158 Sum_probs=38.8
Q ss_pred eEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcC
Q 003450 626 RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (819)
Q Consensus 626 kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~ 672 (819)
-.+|||.....+..|...+...|..+..+.+......|.+.+..|..
T Consensus 4 ifvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefek 50 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEK 50 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHT
T ss_pred EEEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHH
Confidence 35788888888888888888888888888888888888888888864
No 367
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=52.88 E-value=25 Score=37.74 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=28.2
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
..+.+-+...+..+. ...++-.+|.+++|+|||.+.-+++..+
T Consensus 149 Lg~~~~~~~~L~~l~--~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 149 LGMTAHNHDNFRRLI--KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SCCCHHHHHHHHHHH--TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH--HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 345555666665551 2344456799999999998766666554
No 368
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=52.83 E-value=9.6 Score=42.29 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=25.1
Q ss_pred CchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH
Q 003450 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL 325 (819)
Q Consensus 286 L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l 325 (819)
+.+.++..+. .....+.+.++.+++|+|||.+.-+++
T Consensus 245 ~~~~~l~~l~---~~v~~g~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 245 VPSGVLAYLW---LAIEHKFSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp SCHHHHHHHH---HHHHTTCCEEEEESTTSSHHHHHHHHG
T ss_pred CCHHHHHHHH---HHHhCCCEEEEECCCCCCHHHHHHHHH
Confidence 4444444444 344677889999999999997654443
No 369
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=52.81 E-value=9.2 Score=34.46 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=22.8
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
.+...+|.++.|+|||..+-+++..+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6777889999999999888777766543
No 370
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=52.80 E-value=9.8 Score=36.04 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=21.8
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
..+...+|.+.+|+|||..+-.+...+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 456678899999999998887777665
No 371
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=58.02 E-value=2.9 Score=33.72 Aligned_cols=25 Identities=36% Similarity=0.686 Sum_probs=23.0
Q ss_pred hhhhhhccCCCcccccccChHHHHH
Q 003450 131 KQYLVKWKGLSYLHCTWVPEKEFLK 155 (819)
Q Consensus 131 ~eylVKw~~~s~~h~~W~~~~~l~~ 155 (819)
.+|+|-|.|+.-..++|+|++.|..
T Consensus 42 ~~YyVHY~GwNkR~DEWV~~~Rl~k 66 (85)
T 2lrq_A 42 VEYYIHYAGWSKNWDEWVPENRVLK 66 (85)
Confidence 7999999999999999999998764
No 372
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=52.38 E-value=18 Score=46.79 Aligned_cols=57 Identities=14% Similarity=0.005 Sum_probs=44.7
Q ss_pred HHHHHHHH--hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHH
Q 003450 292 EGLNFLRF--SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWE 349 (819)
Q Consensus 292 ~~v~~l~~--~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~ 349 (819)
..++.+.. .+..+.-.+|++++|.|||..++.++..+... .++++++.-.....||.
T Consensus 718 ~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~-g~~VlyiS~Ees~~ql~ 776 (2050)
T 3cmu_A 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY 776 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCCHHH
T ss_pred hHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEECCCcHHHHH
Confidence 34556654 46677888999999999999999888877543 34899999888888886
No 373
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=51.89 E-value=19 Score=45.82 Aligned_cols=55 Identities=15% Similarity=0.059 Sum_probs=40.4
Q ss_pred HHHHHHH--hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHH
Q 003450 293 GLNFLRF--SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (819)
Q Consensus 293 ~v~~l~~--~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW 348 (819)
.++.+.. .+..+..++|++++|+|||..++.++......+ ++++++.-.....+-
T Consensus 719 eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g-~~VlyiS~Ees~~ql 775 (1706)
T 3cmw_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG-KTCAFIDAEHALDPI 775 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEECTTSCCCHH
T ss_pred HHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcC-CCeEEEeccchHHHH
Confidence 4555543 456778899999999999999999888775433 478888776555553
No 374
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=51.30 E-value=32 Score=34.43 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=35.7
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcC---------CCCceEEEecCcchHHHHHHHHHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGE---------RISPHLVVAPLSTLRNWEREFATW 355 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~---------~~~~~LIv~P~~ll~qW~~e~~~~ 355 (819)
..+.-.+|.++.|+|||..+..++..+... ..++++++.-.....+....+..+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~ 90 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHAL 90 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHH
Confidence 567778899999999999888877755432 134677776655554444334333
No 375
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=51.11 E-value=3.3 Score=35.06 Aligned_cols=45 Identities=24% Similarity=0.448 Sum_probs=30.7
Q ss_pred cccccccccCCCC------------------eEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 50 KDDSCQACGESEN------------------LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 50 ~~~~C~~c~~~~~------------------~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
.++.|.+|...-. .+.--.|.-.||..|+.+=+.. .-.||.|+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~ 98 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNRE 98 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT----CSBCSSSCSB
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc----CCcCcCCCCc
Confidence 4567888875421 2233469999999999775543 3469999864
No 376
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=50.76 E-value=19 Score=37.73 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=37.6
Q ss_pred HHHHHHH--hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcch
Q 003450 293 GLNFLRF--SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (819)
Q Consensus 293 ~v~~l~~--~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll 345 (819)
+++.+.. .+..+.-.+|+++.|+|||..++.++......+ .+++++......
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g-~~vlyid~E~s~ 103 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG-KTCAFIDAEHAL 103 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEESSCCC
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEeCCCCc
Confidence 4555532 345677789999999999999999888775443 478888775444
No 377
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=50.69 E-value=7.9 Score=36.84 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=20.6
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLAS 327 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~ 327 (819)
.+.+.+|.+++|+|||-.++.++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4567889999999999888877654
No 378
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=50.18 E-value=12 Score=41.01 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=24.2
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
....+.+|.+++|+|||..+-+++..+..
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 34568899999999999999888887754
No 379
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=49.91 E-value=4 Score=35.22 Aligned_cols=27 Identities=30% Similarity=0.520 Sum_probs=0.0
Q ss_pred CCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 68 TCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 68 ~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
.|.-.||..|+.+=+.. .-.||.|+..
T Consensus 83 ~C~H~FH~~CI~~Wl~~----~~~CP~Cr~~ 109 (117)
T 4a0k_B 83 VCNHAFHFHCISRWLKT----RQVCPLDNRE 109 (117)
T ss_dssp -------------------------------
T ss_pred CcCceEcHHHHHHHHHc----CCcCCCCCCe
Confidence 68899999999876544 2369999864
No 380
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=49.70 E-value=45 Score=41.01 Aligned_cols=94 Identities=9% Similarity=0.030 Sum_probs=63.3
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHH----HHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEE
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLED----YLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~----~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L 681 (819)
.+||........-.....|.+++|.+..+..+.-..+ .+...++.+..++|..+..++...+.....+..+ +++
T Consensus 634 GsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~d--IvV 711 (1151)
T 2eyq_A 634 GFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID--ILI 711 (1151)
T ss_dssp CTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCS--EEE
T ss_pred CCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCC--EEE
Confidence 5788766554444445678899999998766554444 4444578899999999999999998888765444 234
Q ss_pred eccccccccCCcccCCEEEE
Q 003450 682 LSTRAGGLGINLATADTVII 701 (819)
Q Consensus 682 ~st~a~~~GinL~~a~~VI~ 701 (819)
.+.......+++...+.||+
T Consensus 712 ~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 712 GTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp ECTHHHHSCCCCSSEEEEEE
T ss_pred ECHHHHhCCccccccceEEE
Confidence 44455555566655554444
No 381
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=49.56 E-value=13 Score=34.40 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=21.0
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
.+...+|.+.+|+|||..+-.+...+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 45678999999999998887766654
No 382
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=49.49 E-value=10 Score=40.11 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=21.6
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
...+.+|.+++|+|||..|-++...+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999888777665
No 383
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=49.24 E-value=43 Score=40.99 Aligned_cols=97 Identities=13% Similarity=0.085 Sum_probs=68.1
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhh---CCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEe
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLL 682 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~ 682 (819)
.|||-.+..-.+......|.++||.+..+..+..+.+.|.. .|+++..++|+.+..+|...+..+..++.. +++.
T Consensus 103 GSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~--IlV~ 180 (1104)
T 4ddu_A 103 GVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH--ILVF 180 (1104)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCS--EEEE
T ss_pred CCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCC--EEEE
Confidence 68898866666555557788999999999888877777776 578999999999998888888888765443 2333
Q ss_pred ccccccc---cCCcccCCEEEEeCC
Q 003450 683 STRAGGL---GINLATADTVIIYDS 704 (819)
Q Consensus 683 st~a~~~---GinL~~a~~VI~~d~ 704 (819)
++...-. -+++...+.||+=+.
T Consensus 181 Tp~rL~~~l~~l~~~~l~~lViDEa 205 (1104)
T 4ddu_A 181 STQFVSKNREKLSQKRFDFVFVDDV 205 (1104)
T ss_dssp EHHHHHHSHHHHHTSCCSEEEESCH
T ss_pred CHHHHHHHHHhhcccCcCEEEEeCC
Confidence 3333311 134556666666333
No 384
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=48.50 E-value=18 Score=35.12 Aligned_cols=50 Identities=12% Similarity=-0.028 Sum_probs=31.8
Q ss_pred HHHHHHH-hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-----CCceEEEecC
Q 003450 293 GLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASLFGER-----ISPHLVVAPL 342 (819)
Q Consensus 293 ~v~~l~~-~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~-----~~~~LIv~P~ 342 (819)
+++.+.. .+..+.-.+|.++.|+|||..+..++....... ..+++.+.-.
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 4444432 345566788999999999998888777532211 2355666543
No 385
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=48.05 E-value=16 Score=28.49 Aligned_cols=50 Identities=22% Similarity=0.431 Sum_probs=32.8
Q ss_pred cccccccccCCCC-eEecCCCCccccccCcCCCCCCC---CCCCcccCccCCCCc
Q 003450 50 KDDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAP---PSGSWRCPECVSPLN 100 (819)
Q Consensus 50 ~~~~C~~c~~~~~-~~~C~~C~~~~H~~c~~p~~~~~---~~~~w~C~~c~~~~~ 100 (819)
+...|.+|.+.-. -+. -.|+-.||..|+..-+... ..+.-.||.|.....
T Consensus 11 ~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 11 EEVTCPICLELLTEPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCEETTTTEECSSCCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cCCCCcCCCcccCCeeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 3467999985422 111 2688899999997655442 134678999997543
No 386
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=47.72 E-value=27 Score=30.24 Aligned_cols=54 Identities=13% Similarity=0.034 Sum_probs=37.7
Q ss_pred chHHHHHHHHHHHHhcCceEEEEec-chhHHHHHHHHHhhCCCeEEEEeccCChH
Q 003450 608 GKLQLLDKMMVKLKEQGHRVLIYSQ-FQHMLDLLEDYLTFKKWQYERIDGKVGGA 661 (819)
Q Consensus 608 ~Kl~~l~~ll~~l~~~g~kvlIFs~-~~~~ld~L~~~L~~~g~~~~~l~G~~~~~ 661 (819)
+++..+...+..+...+++++|||. .-.........|...|+.+..++|++..-
T Consensus 73 ~~~~~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W 127 (134)
T 3g5j_A 73 YKLKDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAY 127 (134)
T ss_dssp GGHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHH
T ss_pred ccHHHHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHH
Confidence 4445555555555433389999994 55556677888888999999999987543
No 387
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=47.38 E-value=15 Score=36.88 Aligned_cols=43 Identities=23% Similarity=0.245 Sum_probs=27.1
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW 348 (819)
...+|.+|.++.|+|||..+-+++..+ +. +++.+-...+...|
T Consensus 42 ~~~~GvlL~Gp~GtGKTtLakala~~~---~~-~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 42 VTPAGVLLAGPPGCGKTLLAKAVANES---GL-NFISVKGPELLNMY 84 (274)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT---TC-EEEEEETTTTCSST
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHc---CC-CEEEEEcHHHHhhh
Confidence 345668999999999998776655543 11 34545444444333
No 388
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=47.26 E-value=16 Score=35.54 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=21.8
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCC
Q 003450 308 ILADEMGLGKTIQSIAFLASLFGERI 333 (819)
Q Consensus 308 iLade~GlGKT~~~i~~l~~l~~~~~ 333 (819)
|-+-++|.|||+.+++++..+.+.+.
T Consensus 9 Itgt~t~vGKT~vt~~L~~~l~~~G~ 34 (228)
T 3of5_A 9 IIGTDTEVGKTYISTKLIEVCEHQNI 34 (228)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTTC
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHCCC
Confidence 45667999999999999999887654
No 389
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=47.22 E-value=27 Score=34.25 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=19.7
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
..+.+|.++.|+|||..+-++...+
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999998776666543
No 390
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=47.20 E-value=17 Score=39.29 Aligned_cols=37 Identities=27% Similarity=0.196 Sum_probs=27.3
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P 341 (819)
+..++++..|+|||.++..++.++......++++|.-
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~ 137 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA 137 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 3456778999999999999998887662345555554
No 391
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.12 E-value=3.7 Score=31.08 Aligned_cols=46 Identities=20% Similarity=0.470 Sum_probs=30.8
Q ss_pred cccccccccCCCC-eEecCCCCccccccCcCCCCCCCCCCCcccCccCCCC
Q 003450 50 KDDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (819)
Q Consensus 50 ~~~~C~~c~~~~~-~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~ 99 (819)
+...|.+|.+.-. -+. -.|+-.||..|+..-+. .+.-.||.|....
T Consensus 14 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLS---SSSPKCTACQESI 60 (66)
T ss_dssp CCEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHT---TSSCCCTTTCCCC
T ss_pred cCCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHH---hCcCCCCCCCcCC
Confidence 3467999985422 111 37898999999976553 3445799998643
No 392
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=46.07 E-value=17 Score=35.76 Aligned_cols=26 Identities=19% Similarity=0.057 Sum_probs=21.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCC
Q 003450 308 ILADEMGLGKTIQSIAFLASLFGERI 333 (819)
Q Consensus 308 iLade~GlGKT~~~i~~l~~l~~~~~ 333 (819)
|.+-++|.|||+.+++++..+.+.+.
T Consensus 26 ItgT~t~vGKT~vs~gL~~~L~~~G~ 51 (242)
T 3qxc_A 26 ISATNTNAGKTTCARLLAQYCNACGV 51 (242)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEeCCCCCcHHHHHHHHHHHHHhCCC
Confidence 45668999999999999999877654
No 393
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=46.03 E-value=12 Score=34.64 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.4
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLA 326 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~ 326 (819)
.+.+.++.++.|+|||..|++++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 567889999999999999988886
No 394
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=45.55 E-value=2.2 Score=35.54 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=22.6
Q ss_pred hhhhhhhccCCCcccccccChHHHH
Q 003450 130 VKQYLVKWKGLSYLHCTWVPEKEFL 154 (819)
Q Consensus 130 ~~eylVKw~~~s~~h~~W~~~~~l~ 154 (819)
...|+|-|.|++...++|+|++-|.
T Consensus 58 ~~~Y~VHY~GWn~rwDEWV~edRil 82 (101)
T 3m9q_A 58 FYEYKIHFQGWRPSYDRAVRATVLL 82 (101)
T ss_dssp EEEEEEEETTSCGGGCEEECGGGEE
T ss_pred ceEEEEEeCCCCcCceeecCHHHcc
Confidence 4689999999999999999999774
No 395
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=45.17 E-value=8.1 Score=37.96 Aligned_cols=46 Identities=26% Similarity=0.567 Sum_probs=33.4
Q ss_pred chhhhHhhhhcCCcceeeEeeecccccccccccCCCCccccHHHHHHHHH
Q 003450 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (819)
Q Consensus 192 ~~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~ 241 (819)
..+..++..+..++..+||+||. .+.+++|.+...+. +..++.|..
T Consensus 187 ~~~~~~~~~~~~~~~~e~l~~~~--~~~~~~w~~~~~i~--~~li~~y~~ 232 (244)
T 3ui2_A 187 AEVDEIVEKRGKGKDVEYLVRWK--DGGDCEWVKGVHVA--EDVAKDYED 232 (244)
T ss_dssp EEEEEEEEEESCTTSCEEEEEES--SSSCEEEEESTTBC--HHHHHHHHH
T ss_pred ccHHHHHHHhccCcchhhhhhhc--CCCCCCcCcchhcC--HHHHHHHHH
Confidence 44455555666667889999995 46889999887654 566778865
No 396
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=45.07 E-value=18 Score=39.11 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=21.4
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
..++.+|.+++|+|||..+-+++..+
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999887776655
No 397
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=45.03 E-value=17 Score=37.66 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=20.7
Q ss_pred HHHHHHhhcCCCceEEEcCCCCcHHHHH
Q 003450 294 LNFLRFSWSKQTHVILADEMGLGKTIQS 321 (819)
Q Consensus 294 v~~l~~~~~~~~~~iLade~GlGKT~~~ 321 (819)
+..+......+....|.+++|+|||...
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHHH
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHHH
Confidence 3444444567888999999999999643
No 398
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=44.83 E-value=80 Score=26.26 Aligned_cols=56 Identities=13% Similarity=0.107 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCceEEEEec------chhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHh
Q 003450 614 DKMMVKLKEQGHRVLIYSQ------FQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRF 670 (819)
Q Consensus 614 ~~ll~~l~~~g~kvlIFs~------~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F 670 (819)
.+.+..+.+ .++|+||+. +=........+|...|++|..++=....+.++.+.+..
T Consensus 8 ~~~v~~~i~-~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~ 69 (109)
T 3ipz_A 8 KDTLEKLVN-SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYS 69 (109)
T ss_dssp HHHHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHc-cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHH
Confidence 344555554 568999988 45678889999999999999888665655555554443
No 399
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=44.36 E-value=10 Score=30.79 Aligned_cols=32 Identities=31% Similarity=0.762 Sum_probs=25.9
Q ss_pred cccccccCCCC--eEecCCCCccccccCcCCCCC
Q 003450 52 DSCQACGESEN--LMSCDTCTYAYHAKCLVPPLK 83 (819)
Q Consensus 52 ~~C~~c~~~~~--~~~C~~C~~~~H~~c~~p~~~ 83 (819)
..|.+|+..+. .-.|..|+-..|..|...|..
T Consensus 48 ~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~~p~~ 81 (89)
T 1v5n_A 48 YTCDKCEEEGTIWSYHCDECDFDLHAKCALNEDT 81 (89)
T ss_dssp CCCTTTSCCCCSCEEECTTTCCCCCHHHHHCSSC
T ss_pred eEeCCCCCcCCCcEEEcCCCCCeEcHHhcCCCCc
Confidence 56999997655 778999999999999865543
No 400
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=44.27 E-value=16 Score=35.17 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=20.3
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
+...+|.+.+|+|||.++-.+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4567899999999999887776655
No 401
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=44.14 E-value=14 Score=33.92 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=18.7
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l 328 (819)
.-.+|.+.+|+|||..+-.+...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999998776665544
No 402
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=44.13 E-value=14 Score=38.27 Aligned_cols=24 Identities=42% Similarity=0.552 Sum_probs=19.7
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l 328 (819)
...+|.++.|+|||..+-+++..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 568999999999998876666554
No 403
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=43.89 E-value=7.3 Score=30.78 Aligned_cols=48 Identities=25% Similarity=0.578 Sum_probs=31.4
Q ss_pred cccccccccCCCC-----eEecCCCCccccccCcCCCCCCCCCCCcccCccCCCCcc
Q 003450 50 KDDSCQACGESEN-----LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLND 101 (819)
Q Consensus 50 ~~~~C~~c~~~~~-----~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~~~ 101 (819)
++..|.+|.+.-. .+.| .|+-.|+..|+..-.. .+...||.|+.....
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~---~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRT---DENGLCPACRKPYPE 62 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTT---SSCSBCTTTCCBCSS
T ss_pred cCCcCCccCccCcccccccccc-CCCCCcCHHHHHHHHh---cCCCCCCCCCCccCC
Confidence 3456999987421 2223 5888899999854332 246789999976543
No 404
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=43.88 E-value=35 Score=36.17 Aligned_cols=43 Identities=14% Similarity=0.256 Sum_probs=31.0
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcch
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll 345 (819)
..+.++++.+++|+|||..+-.++..+...+ .+++|+=|..-.
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~-~~~~~~D~~~~~ 75 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLLREYMQG-SRVIIIDPEREY 75 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHHHHHTTT-CCEEEEESSCCS
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHHHHHCC-CEEEEEeCCcCH
Confidence 3577899999999999988766666554433 467777776443
No 405
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=43.83 E-value=7.6 Score=45.49 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=30.4
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWE 349 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~ 349 (819)
..++.+|.++.|+|||+.|-+++..+ ..+++.|....++..|.
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~----~~~f~~v~~~~l~s~~v 552 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANEC----QANFISIKGPELLTMWF 552 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTT----TCEEEECCHHHHHTTTC
T ss_pred CCceEEEecCCCCCchHHHHHHHHHh----CCceEEeccchhhcccc
Confidence 45689999999999998887776643 23666665556555553
No 406
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=43.62 E-value=16 Score=33.88 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=21.1
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
+...+|.+.+|+|||.++-.+...+-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999988777766643
No 407
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=43.21 E-value=27 Score=36.48 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=22.7
Q ss_pred HHHHHhhcCCCc--eEEEcCCCCcHHHHHHHHHHHH
Q 003450 295 NFLRFSWSKQTH--VILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 295 ~~l~~~~~~~~~--~iLade~GlGKT~~~i~~l~~l 328 (819)
..+......+.. .+|.+.+|+|||..+-+++..+
T Consensus 13 ~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 13 QLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 333333344444 8899999999998876655544
No 408
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=43.15 E-value=16 Score=33.92 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=19.6
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLAS 327 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~ 327 (819)
.+...+|.+.+|+|||..+-.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3456889999999999877665554
No 409
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=43.11 E-value=16 Score=33.21 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=19.8
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
-.+.+|.+.+|+|||.++-.+...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999998887666555
No 410
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.06 E-value=3.2 Score=33.00 Aligned_cols=45 Identities=20% Similarity=0.442 Sum_probs=30.6
Q ss_pred cccccccccCCCC-eEecCCCCccccccCcCCCCCCCCCCCcccCccCCCC
Q 003450 50 KDDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (819)
Q Consensus 50 ~~~~C~~c~~~~~-~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~ 99 (819)
....|.+|...-. .+. ..|+-.||..|+..-+.. .-.||.|....
T Consensus 14 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~ 59 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVV-TKCRHYFCESCALEHFRA----TPRCYICDQPT 59 (81)
T ss_dssp CCSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHHH----CSBCSSSCCBC
T ss_pred CCCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHHC----CCcCCCcCccc
Confidence 3457999986533 222 479999999999654432 34799998643
No 411
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=43.05 E-value=20 Score=42.07 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=21.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 306 HVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
+.+|.+++|+|||..|-++...+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~ 547 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFG 547 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4899999999999999888877744
No 412
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=42.95 E-value=24 Score=33.60 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=28.8
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe--cCcchHHHHH
Q 003450 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVA--PLSTLRNWER 350 (819)
Q Consensus 308 iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~--P~~ll~qW~~ 350 (819)
+...--|.|||.+++.++..+...+ ++|+|= |...+..|..
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g--~VlliD~D~q~~~~~~~~ 47 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQG--ETLLIDGDPNRSATGWGK 47 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTS--CEEEEEECTTCHHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcC--CEEEEECCCCCCHHHHhc
Confidence 4556779999999999998887765 666643 4444455543
No 413
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=42.65 E-value=9.8 Score=39.48 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=19.9
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
+.-.+|.++||+|||..++.++..+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3457899999999998887776543
No 414
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=42.49 E-value=3.2 Score=34.67 Aligned_cols=47 Identities=26% Similarity=0.523 Sum_probs=34.3
Q ss_pred cccccccccCCC-CeEecCCCCccccccCcCCCCCCCCCCCcccCccCCCC
Q 003450 50 KDDSCQACGESE-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (819)
Q Consensus 50 ~~~~C~~c~~~~-~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~ 99 (819)
+...|.+|.+.- +-+.|..|+-.||..|+..-+... .-.||.|+...
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~ 68 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ---RAQCPHCRAPL 68 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT---CSBCTTTCCBC
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC---cCCCCCCCCcC
Confidence 346799998653 467778999999999996544322 15799998644
No 415
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=42.22 E-value=17 Score=32.98 Aligned_cols=23 Identities=17% Similarity=0.050 Sum_probs=18.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHH
Q 003450 306 HVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l 328 (819)
..+|.+.+|+|||.++-.+...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999998876666554
No 416
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=42.16 E-value=21 Score=35.29 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=22.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGERI 333 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~~~ 333 (819)
.|-+-++|.|||+.+++++..+.+.+.
T Consensus 30 ~Itgt~t~vGKT~vt~gL~~~l~~~G~ 56 (251)
T 3fgn_A 30 VVTGTGTGVGKTVVCAALASAARQAGI 56 (251)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCC
Confidence 345678899999999999999987664
No 417
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=41.95 E-value=18 Score=35.18 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=21.4
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
.+...+|.+.+|+|||.++-.+...+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999988777765
No 418
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=41.86 E-value=21 Score=33.31 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=21.4
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
..+...+|.+.+|+|||.++-.+...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 455678899999999998887766655
No 419
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.72 E-value=7.5 Score=28.21 Aligned_cols=44 Identities=20% Similarity=0.481 Sum_probs=27.9
Q ss_pred cccccccccCCCC-eEecCCCCccccccCcCCCCCCCCCCCcccCcc
Q 003450 50 KDDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPEC 95 (819)
Q Consensus 50 ~~~~C~~c~~~~~-~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c 95 (819)
+...|.+|.+.-. -+. -.|+-.||..|+..-+... ...-.||.|
T Consensus 14 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVI-IECGHNFCKACITRWWEDL-ERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCC-CSSCCCCCHHHHHHHTTSS-CCSCCCSCC
T ss_pred cCCCCccCCcccCccEe-CCCCCccCHHHHHHHHHhc-CCCCCCCCC
Confidence 3456999986532 111 2588889999987654432 345678877
No 420
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=41.50 E-value=23 Score=32.84 Aligned_cols=27 Identities=26% Similarity=0.131 Sum_probs=21.0
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
+...+|.+.+|+|||.++-.+...+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 445779999999999988777666643
No 421
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=41.36 E-value=24 Score=32.46 Aligned_cols=28 Identities=18% Similarity=0.016 Sum_probs=21.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 003450 306 HVILADEMGLGKTIQSIAFLASLFGERI 333 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l~~~~~ 333 (819)
-..+++..|+|||..+..++..+...+.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~ 33 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGW 33 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCC
Confidence 3568889999999888888877765543
No 422
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=41.34 E-value=98 Score=25.88 Aligned_cols=55 Identities=13% Similarity=0.061 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCceEEEEec------chhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHH
Q 003450 614 DKMMVKLKEQGHRVLIYSQ------FQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (819)
Q Consensus 614 ~~ll~~l~~~g~kvlIFs~------~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~ 669 (819)
.+.+..+.+ .++|+||+. +-........+|...|++|..++=....+.++.+...
T Consensus 6 ~~~v~~~i~-~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~ 66 (111)
T 3zyw_A 6 NLRLKKLTH-AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAY 66 (111)
T ss_dssp HHHHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHH
Confidence 344455444 568999995 4456788888999999999998876666655555443
No 423
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=41.29 E-value=10 Score=24.39 Aligned_cols=13 Identities=23% Similarity=0.986 Sum_probs=10.5
Q ss_pred CCCCcccCccCCC
Q 003450 86 PSGSWRCPECVSP 98 (819)
Q Consensus 86 ~~~~w~C~~c~~~ 98 (819)
..|+|.|+.|...
T Consensus 3 ~~gDW~C~~C~~~ 15 (33)
T 2k1p_A 3 SANDWQCKTCSNV 15 (33)
T ss_dssp SSSSCBCSSSCCB
T ss_pred CCCCcccCCCCCc
Confidence 4689999999753
No 424
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=41.22 E-value=17 Score=33.87 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=19.9
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
+.-.+|.+.+|+|||.++-.+...+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4457899999999999887766655
No 425
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=41.19 E-value=15 Score=26.55 Aligned_cols=12 Identities=33% Similarity=0.974 Sum_probs=9.6
Q ss_pred CCCcccCccCCC
Q 003450 87 SGSWRCPECVSP 98 (819)
Q Consensus 87 ~~~w~C~~c~~~ 98 (819)
..+|.||.|...
T Consensus 34 P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 34 PDDWVCPLCGVG 45 (54)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 357999999864
No 426
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=41.17 E-value=37 Score=33.88 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=19.6
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
..+.+|.++.|+|||..+-++...+
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCcChHHHHHHHHHHHc
Confidence 3468999999999998776666543
No 427
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=40.93 E-value=33 Score=36.34 Aligned_cols=74 Identities=12% Similarity=0.031 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHcCCCeEEEEecCh
Q 003450 291 LEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTS 368 (819)
Q Consensus 291 ~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~p~~~v~~~~g~~ 368 (819)
..+++.+ .-...|....|.++.|+|||..+..++..+...+..-.+|++ ++.+=.+|...+.-.++.+++.++.
T Consensus 162 iraID~~-~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~---lIGER~~Ev~~~~~~~~~~vV~ata 235 (422)
T 3ice_A 162 ARVLDLA-SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL---LIDERPEEVTEMQRLVKGEVVASTF 235 (422)
T ss_dssp HHHHHHH-SCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEE---EESSCHHHHHHHHTTCSSEEEEECT
T ss_pred ceeeeee-eeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEE---EecCChHHHHHHHHHhCeEEEEeCC
Confidence 4455543 344667888999999999998775554444332333334443 4444445555554344444444443
No 428
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=40.92 E-value=17 Score=35.99 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=18.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHH
Q 003450 307 VILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l 328 (819)
.+|.+++|+|||..+..++..+
T Consensus 4 i~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHhcC
Confidence 5789999999999887777655
No 429
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=40.59 E-value=23 Score=34.96 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=20.8
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
+...+|.+.+|+|||..+-.+...+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 8889999999999998876666544
No 430
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=40.51 E-value=4.9 Score=30.75 Aligned_cols=46 Identities=26% Similarity=0.630 Sum_probs=31.9
Q ss_pred cccccccccCC-------CCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCCC
Q 003450 50 KDDSCQACGES-------ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (819)
Q Consensus 50 ~~~~C~~c~~~-------~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~ 99 (819)
+...|.+|.+. +..+....|+-.||..|+..-+... -.||.|+...
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~ 61 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKI 61 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCCBC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC----CCCCCCCCcc
Confidence 34669999853 3445667899999999996543321 2799998643
No 431
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=40.37 E-value=71 Score=36.41 Aligned_cols=50 Identities=22% Similarity=0.295 Sum_probs=45.9
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEe
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERID 655 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~ 655 (819)
.+||-..+..++..+...|.+|||-+.....+|-|.+.|...+.++.|+.
T Consensus 215 GTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG 264 (646)
T 4b3f_X 215 GTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLG 264 (646)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEECS
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEec
Confidence 58999999999999999999999999999999999999988888888874
No 432
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.15 E-value=4.7 Score=31.23 Aligned_cols=47 Identities=30% Similarity=0.648 Sum_probs=30.3
Q ss_pred ccccccccCC---CCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCCCcc
Q 003450 51 DDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLND 101 (819)
Q Consensus 51 ~~~C~~c~~~---~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~~~ 101 (819)
...|.+|... +..+.--.|.-.||..|+..-+... -.||.|+.....
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~----~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR----KVCPLCNMPVLQ 64 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC----SBCTTTCCBCSS
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC----CcCCCcCccccc
Confidence 4569999864 2222222489999999996544321 279999875444
No 433
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=39.99 E-value=15 Score=23.48 Aligned_cols=25 Identities=28% Similarity=0.602 Sum_probs=15.5
Q ss_pred ccCcCCCC-CCCCCCCcccCccCCCC
Q 003450 75 AKCLVPPL-KAPPSGSWRCPECVSPL 99 (819)
Q Consensus 75 ~~c~~p~~-~~~~~~~w~C~~c~~~~ 99 (819)
..|..|-- .+.-.|.|+|..|.+-.
T Consensus 6 ~~C~KPC~T~DDCS~gw~CqaC~nfa 31 (38)
T 4cpa_I 6 PICNKPCKTHDDCSGAWFCQACWNSA 31 (38)
T ss_dssp TTTTCBCSSSSSSCCCSSCCEEETTT
T ss_pred cccCCCccCccccccchHHHHHHhhc
Confidence 34444432 23457889999998643
No 434
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=39.90 E-value=16 Score=33.82 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=19.7
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
+...+|.+.+|+|||.++-.+...+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4457899999999998887666554
No 435
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=39.81 E-value=53 Score=28.25 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=36.6
Q ss_pred EEEEecchh-------HHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhc
Q 003450 627 VLIYSQFQH-------MLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (819)
Q Consensus 627 vlIFs~~~~-------~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~ 671 (819)
|.||+...- -...+..+|..+|++|..++=+...+.|++++++.+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 566765432 236888999999999999999999999999999884
No 436
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=39.48 E-value=31 Score=33.50 Aligned_cols=33 Identities=21% Similarity=0.143 Sum_probs=24.2
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 003450 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (819)
Q Consensus 308 iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~ 340 (819)
+...--|.|||.+++.++..+......++|+|=
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred EECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 445667999999999998888765234666654
No 437
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=39.47 E-value=1.3e+02 Score=23.20 Aligned_cols=61 Identities=11% Similarity=0.229 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCceEEEEecchh--HHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhc
Q 003450 610 LQLLDKMMVKLKEQGHRVLIYSQFQH--MLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (819)
Q Consensus 610 l~~l~~ll~~l~~~g~kvlIFs~~~~--~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~ 671 (819)
-+-+.+++..++..|+..+||.+-.. -....+......|..|-.+... .+++-...+..|-
T Consensus 37 sqdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlkst-dpeeltqrvrefl 99 (112)
T 2lnd_A 37 SQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKST-DPEELTQRVREFL 99 (112)
T ss_dssp HHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECC-CHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccC-CHHHHHHHHHHHH
Confidence 45677889999999999999988644 3445666667789999988764 5566666666663
No 438
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=39.08 E-value=56 Score=33.89 Aligned_cols=52 Identities=13% Similarity=-0.054 Sum_probs=34.5
Q ss_pred HHHHHHH-hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-----CCCceEEEecCcc
Q 003450 293 GLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASLFGE-----RISPHLVVAPLST 344 (819)
Q Consensus 293 ~v~~l~~-~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~-----~~~~~LIv~P~~l 344 (819)
+++.+.. .+..+.-++|+++.|+|||..++.++...... ..++++++.-...
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 4444432 33455667899999999999988887764321 2347788877554
No 439
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=38.94 E-value=22 Score=38.36 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=28.6
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCc
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ 343 (819)
...++++.+.+|+|||...-.++..+...+ .+++|+=|..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g-~~viv~Dpkg 91 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRG-DRMVIVDPNG 91 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTT-CEEEEEEETT
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCC-CcEEEEeCCC
Confidence 357899999999999987655565554433 3677777764
No 440
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=38.91 E-value=6.5 Score=36.18 Aligned_cols=47 Identities=30% Similarity=0.702 Sum_probs=33.7
Q ss_pred cccccccccCCC-CeEecCCCCccccccCcCCCCCCCCCCCcccCccCCCC
Q 003450 50 KDDSCQACGESE-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (819)
Q Consensus 50 ~~~~C~~c~~~~-~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~ 99 (819)
+...|.+|.+.- +-+.+..|+-.||..|+..-+. .+.-.||.|....
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALR---SGNKECPTCRKKL 100 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH---TTCCBCTTTCCBC
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHH---hCcCCCCCCCCcC
Confidence 346799998653 3555668999999999965543 2356799998643
No 441
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=38.83 E-value=19 Score=34.06 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=20.8
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
..+.-.+|.+++|+|||..+-.++..+
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456678899999999998776655543
No 442
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=38.81 E-value=21 Score=34.26 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=20.5
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
....+|.+.+|+|||.++-.+...+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999887776665
No 443
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=38.68 E-value=26 Score=33.56 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=25.2
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 003450 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (819)
Q Consensus 308 iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P 341 (819)
|.....|.|||.+++.++..+...+ .++|++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G-~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAG-YRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTT-CCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEcc
Confidence 4555789999999999998887654 36777655
No 444
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=38.67 E-value=11 Score=39.32 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=21.6
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
..++.+|.+++|+|||..+-++...+
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CCceEEEECCCCccHHHHHHHHHHhC
Confidence 45679999999999999887777655
No 445
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=38.62 E-value=65 Score=26.90 Aligned_cols=95 Identities=9% Similarity=-0.059 Sum_probs=45.3
Q ss_pred cCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCC--CCCcEEEEeccccccccCCcc--cCCE
Q 003450 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK--NSSRFCFLLSTRAGGLGINLA--TADT 698 (819)
Q Consensus 623 ~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~--~~~~~v~L~st~a~~~GinL~--~a~~ 698 (819)
.|..+..+......++.+ ....+....++-.++...-.+.+...+.. .....+++++......-.... +++.
T Consensus 26 ~g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~ 101 (127)
T 3i42_A 26 LGFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDF 101 (127)
T ss_dssp TTEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSE
T ss_pred cCCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHH
Confidence 366666655554444433 33556777777665544444445444432 222333344333222111111 2333
Q ss_pred EEEeCCCCCcchHHHHhHhhhhcCC
Q 003450 699 VIIYDSDWNPHADLQAMARAHRLGQ 723 (819)
Q Consensus 699 VI~~d~~wnp~~~~Qa~gR~~R~Gq 723 (819)
++.-|.++....+++.++++-++
T Consensus 102 --~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 102 --YLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp --EEESSCCHHHHHHHHHHHC----
T ss_pred --heeCCCCHHHHHHHHHHhhccCC
Confidence 34456778888888877776544
No 446
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=38.61 E-value=7.3 Score=24.83 Aligned_cols=11 Identities=27% Similarity=0.912 Sum_probs=9.4
Q ss_pred CCCcccCccCC
Q 003450 87 SGSWRCPECVS 97 (819)
Q Consensus 87 ~~~w~C~~c~~ 97 (819)
.|+|.|+.|..
T Consensus 3 ~gDW~C~~C~~ 13 (32)
T 2lk0_A 3 FEDWLCNKCCL 13 (32)
T ss_dssp CSEEECTTTCC
T ss_pred CCCCCcCcCcC
Confidence 48999999975
No 447
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=38.42 E-value=40 Score=35.25 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=37.2
Q ss_pred HHHHHHH--hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHH
Q 003450 293 GLNFLRF--SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN 347 (819)
Q Consensus 293 ~v~~l~~--~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~q 347 (819)
.++.++- .+..+.-++|.++.|+|||..++.++..+...+ +++++|.......+
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~g-g~VlyId~E~s~~~ 103 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMG-GVAAFIDAEHALDP 103 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTT-CCEEEEESSCCCCH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcC-CeEEEEecccccch
Confidence 4554433 334555678999999999999888887765433 47888887655544
No 448
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=38.35 E-value=1.4e+02 Score=25.39 Aligned_cols=54 Identities=9% Similarity=-0.055 Sum_probs=37.9
Q ss_pred HHHHHHHhcCceEEEEecc------hhHHHHHHHHHhhCCCe---EEEEeccCChHHHHHHHHH
Q 003450 615 KMMVKLKEQGHRVLIYSQF------QHMLDLLEDYLTFKKWQ---YERIDGKVGGAERQIRIDR 669 (819)
Q Consensus 615 ~ll~~l~~~g~kvlIFs~~------~~~ld~L~~~L~~~g~~---~~~l~G~~~~~~R~~~i~~ 669 (819)
+.+..+.+ .++|+||+.. -.......++|...|++ |..++=....+.++.+...
T Consensus 7 ~~v~~~i~-~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~ 69 (121)
T 3gx8_A 7 KAIEDAIE-SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEF 69 (121)
T ss_dssp HHHHHHHH-SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHH
T ss_pred HHHHHHhc-cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHH
Confidence 44555554 5689999884 56778888889888998 8888766665555555443
No 449
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=37.76 E-value=20 Score=33.22 Aligned_cols=25 Identities=20% Similarity=0.086 Sum_probs=20.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 306 HVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
..+|.+.+|+|||.++-.+...+-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3678999999999988777776643
No 450
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=37.70 E-value=23 Score=41.49 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=24.2
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
....+.+|.+++|+|||..+-+++..+..
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence 34568999999999999999888887754
No 451
>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}
Probab=37.61 E-value=9.6 Score=30.68 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=17.3
Q ss_pred hhhhhhhccCCCcccccccChHHHH
Q 003450 130 VKQYLVKWKGLSYLHCTWVPEKEFL 154 (819)
Q Consensus 130 ~~eylVKw~~~s~~h~~W~~~~~l~ 154 (819)
...|||||+|.+... ++|..++.
T Consensus 40 el~fLVKWKg~~e~D--lVpa~ean 62 (87)
T 3p7j_A 40 RLTFLIQFKGVDQAE--MVPSSVAN 62 (87)
T ss_dssp EEEEEEEETTCSSCE--EEEHHHHH
T ss_pred cEEEEEEECCCCccc--eEeHHHHh
Confidence 478999999999655 66666554
No 452
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=37.56 E-value=10 Score=30.80 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=22.1
Q ss_pred hhhhhhccCCCcccccccChHHHH
Q 003450 131 KQYLVKWKGLSYLHCTWVPEKEFL 154 (819)
Q Consensus 131 ~eylVKw~~~s~~h~~W~~~~~l~ 154 (819)
.+|+|-|.|+.-+-.+|++++.|.
T Consensus 48 ~~YYVHY~g~NkRlDEWV~~~RL~ 71 (92)
T 2bud_A 48 DEYYVHYVGLNRRLDGWVGRHRIS 71 (92)
T ss_dssp CEEEEECSSSCTTTCEEEETTTEE
T ss_pred cEEEEEeCCcccccccccCHHHhc
Confidence 689999999999999999998764
No 453
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=37.50 E-value=24 Score=32.36 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=19.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHH
Q 003450 306 HVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l 328 (819)
..+|.+.+|+|||..+-.+...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 57899999999998887766655
No 454
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=36.96 E-value=23 Score=37.05 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=20.7
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHh
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~ 329 (819)
..++..++.+++|+|||...-+++..+.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 4455678999999999977666655553
No 455
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=36.72 E-value=23 Score=37.34 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=24.3
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEE
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv 339 (819)
..++..+|.+++|+|||...-+++..+.....+.++++
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 171 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEe
Confidence 45566789999999999776665554433223344433
No 456
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=36.59 E-value=49 Score=31.17 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=21.8
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
.+.-.+|.+.+|+|||.++-.+...+-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4556789999999999988777766543
No 457
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=36.48 E-value=54 Score=27.64 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=22.5
Q ss_pred CceEEEEecchhHHHHHHHHHhhCCCeEEEE
Q 003450 624 GHRVLIYSQFQHMLDLLEDYLTFKKWQYERI 654 (819)
Q Consensus 624 g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l 654 (819)
+.++||..........|...|...|+.+...
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~ 36 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIA 36 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEe
Confidence 4578888888888888888888777765533
No 458
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=36.47 E-value=26 Score=32.29 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=19.1
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l 328 (819)
...+|.+.+|+|||..+-.+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 347899999999998887666654
No 459
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=36.44 E-value=17 Score=34.59 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=22.0
Q ss_pred ceEEEecccccccC---cccHHHHHHHhcc----cCcEEEEeCCC
Q 003450 429 WQCMIVDEGHRLKN---KDSKLFSSLKQYS----TRHRVLLTGTP 466 (819)
Q Consensus 429 ~~~lIvDEaH~~kn---~~s~~~~~l~~l~----~~~~llLTgTP 466 (819)
-.+|||||||.+-+ ........+..+. ....++|.+.|
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 56899999999832 2222223333442 23357777776
No 460
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.37 E-value=11 Score=29.85 Aligned_cols=50 Identities=24% Similarity=0.485 Sum_probs=31.5
Q ss_pred cccccccccCCCC-eEecCCCCccccccCcCCCCCC--CCCCCcccCccCCCCc
Q 003450 50 KDDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKA--PPSGSWRCPECVSPLN 100 (819)
Q Consensus 50 ~~~~C~~c~~~~~-~~~C~~C~~~~H~~c~~p~~~~--~~~~~w~C~~c~~~~~ 100 (819)
....|.+|.+.-. .+. -.|+-.||..|+..-+.. ...+.-.||.|.....
T Consensus 18 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLS-LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCTTTCSCCSSCBC-CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCCCcccCCcee-CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 3457999986533 122 268888999998643322 1234568999986543
No 461
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=36.30 E-value=39 Score=37.69 Aligned_cols=41 Identities=27% Similarity=0.394 Sum_probs=30.0
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCC-CC--ceEEEecCc
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGER-IS--PHLVVAPLS 343 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~-~~--~~LIv~P~~ 343 (819)
...+.++++.||+|||...-+++..+.... +. .+++|=|..
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 457899999999999999888888776432 22 455555654
No 462
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=36.23 E-value=3.3 Score=34.87 Aligned_cols=24 Identities=25% Similarity=0.596 Sum_probs=22.1
Q ss_pred hhhhhhccCCCcccccccChHHHH
Q 003450 131 KQYLVKWKGLSYLHCTWVPEKEFL 154 (819)
Q Consensus 131 ~eylVKw~~~s~~h~~W~~~~~l~ 154 (819)
..|+|-|.|++..-+.|+|++.|.
T Consensus 59 ~~Y~VHY~GWn~~wDEWV~e~rll 82 (110)
T 3m9p_A 59 PEYLIHFNGWNRSWDRWAAEDHVL 82 (110)
T ss_dssp EEEEEEETTSCGGGCEEEEGGGEE
T ss_pred eEEEEEECCCCcchhhccCHhhhh
Confidence 689999999999999999998774
No 463
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.18 E-value=2.3 Score=32.42 Aligned_cols=45 Identities=27% Similarity=0.629 Sum_probs=30.9
Q ss_pred cccccccccCC-------CCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 50 KDDSCQACGES-------ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 50 ~~~~C~~c~~~-------~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
+...|.+|.+. +..+....|+-.||..|+..-+.. .-.||.|+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 65 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKK 65 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----CSSCTTTCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----CCCCCCCCCc
Confidence 44669999853 233455679999999999654332 2369999864
No 464
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=36.12 E-value=40 Score=45.11 Aligned_cols=61 Identities=16% Similarity=0.109 Sum_probs=39.4
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHh--cCCCCceEEEecCcc
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF--GERISPHLVVAPLST 344 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~--~~~~~~~LIv~P~~l 344 (819)
....+++..-+-.|......+++++|.+++|+|||...=.++..+. ........++-|.++
T Consensus 903 l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~ 965 (2695)
T 4akg_A 903 FSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVL 965 (2695)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTS
T ss_pred CcccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence 3455666666666667777889999999999999976544444432 222124456667644
No 465
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=36.09 E-value=1.6e+02 Score=24.57 Aligned_cols=93 Identities=9% Similarity=-0.081 Sum_probs=42.8
Q ss_pred cCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCC--CCcEEEEeccccccccCCccc--CCE
Q 003450 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN--SSRFCFLLSTRAGGLGINLAT--ADT 698 (819)
Q Consensus 623 ~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~--~~~~v~L~st~a~~~GinL~~--a~~ 698 (819)
.|..+..+......++.+ ....+....++-.++...-.+.+...+... ....+++++...-..-..... ++.
T Consensus 26 ~~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~ 101 (133)
T 3nhm_A 26 GEFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDA 101 (133)
T ss_dssp TTSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSE
T ss_pred CCcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCce
Confidence 466666555554444433 334566777776555443444444444321 122233444332111111111 232
Q ss_pred EEEeCCCCCcchHHHHhHhhhhc
Q 003450 699 VIIYDSDWNPHADLQAMARAHRL 721 (819)
Q Consensus 699 VI~~d~~wnp~~~~Qa~gR~~R~ 721 (819)
++.-|+++....+++.++.+-
T Consensus 102 --~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 102 --YLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp --EEESSCCHHHHHHHHHHHHHH
T ss_pred --EEeccCCHHHHHHHHHHHHhh
Confidence 333467777777777776553
No 466
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=36.08 E-value=25 Score=36.64 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=13.2
Q ss_pred CceE-EEcCCCCcHHHHH
Q 003450 305 THVI-LADEMGLGKTIQS 321 (819)
Q Consensus 305 ~~~i-Lade~GlGKT~~~ 321 (819)
..+| -.+.||+|||.++
T Consensus 95 N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 95 QCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp CEEEEEESSTTSSHHHHH
T ss_pred ceEEEEecCCCCCCCeEE
Confidence 3444 4689999999987
No 467
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=35.94 E-value=49 Score=32.79 Aligned_cols=53 Identities=8% Similarity=-0.039 Sum_probs=40.7
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHc
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~ 356 (819)
.+...++..++|+|||+.++.|+..-...+ .+.++++-.....+..+.+..+.
T Consensus 20 ~gs~~li~g~p~~~~~~l~~qfl~~g~~~G-e~~~~~~~~e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKDILFYILSRKLKSD-NLVGMFSISYPLQLIIRILSRFG 72 (260)
T ss_dssp TCEEEEEECSGGGCHHHHHHHHHHHHHHTT-CEEEEEECSSCHHHHHHHHHHTT
T ss_pred CCcEEEEEeCCCccHHHHHHHHHHHHHHCC-CcEEEEEEeCCHHHHHHHHHHcC
Confidence 344556777999999988888888766553 48888888888888888887765
No 468
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=35.94 E-value=29 Score=35.42 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=24.6
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~ 340 (819)
.-.++.++.|+|||.++..++..+...+ ++++++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g-~kV~lv~ 139 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEG-KSVVLAA 139 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcC-CEEEEEc
Confidence 3456888999999988877776665443 4555554
No 469
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=35.81 E-value=44 Score=27.26 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=8.1
Q ss_pred CCCCcchHHHHhHhhh
Q 003450 704 SDWNPHADLQAMARAH 719 (819)
Q Consensus 704 ~~wnp~~~~Qa~gR~~ 719 (819)
-|.++....+++.++.
T Consensus 101 kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 101 KPLDPQLLLTTLQGLC 116 (119)
T ss_dssp SCSTTHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHh
Confidence 3455555555555443
No 470
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=35.80 E-value=43 Score=32.46 Aligned_cols=46 Identities=26% Similarity=0.271 Sum_probs=28.2
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN 347 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~q 347 (819)
..|.-..|.++.|+|||..+-.++...........+++.-.....+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~ 73 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARD 73 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHH
Confidence 5677788999999999987766653322111234555555444333
No 471
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=35.78 E-value=43 Score=30.12 Aligned_cols=39 Identities=26% Similarity=0.206 Sum_probs=35.4
Q ss_pred CchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHh
Q 003450 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT 645 (819)
Q Consensus 607 s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~ 645 (819)
..++.+..+|+.+....|.||+|.|.....++.|.+.|=
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW 60 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALW 60 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHh
Confidence 447788899999999999999999999999999999994
No 472
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=35.78 E-value=24 Score=33.10 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=18.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHH
Q 003450 307 VILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l 328 (819)
.+|.+.+|+|||.++-.+...+
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHhc
Confidence 5789999999998887776655
No 473
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=35.77 E-value=5.9 Score=31.45 Aligned_cols=48 Identities=23% Similarity=0.580 Sum_probs=31.4
Q ss_pred ccccccccCCCC-eEecCCCCccccccCcCCCCCCC--CCCCcccCccCCCC
Q 003450 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAP--PSGSWRCPECVSPL 99 (819)
Q Consensus 51 ~~~C~~c~~~~~-~~~C~~C~~~~H~~c~~p~~~~~--~~~~w~C~~c~~~~ 99 (819)
...|.+|.+.-. -+.. .|+-.||..|+..-+... ..+...||.|....
T Consensus 19 ~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 19 EVTCPICLELLKEPVSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp TTSCTTTCSCCSSCEEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred CCCCcCCChhhCcceeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 457999986532 2222 488889999986533221 23467899998653
No 474
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=35.44 E-value=20 Score=36.92 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=20.0
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l 328 (819)
...+|.++||+|||..+..++..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999888877664
No 475
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=35.42 E-value=20 Score=36.96 Aligned_cols=26 Identities=23% Similarity=0.097 Sum_probs=21.7
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLAS 327 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~ 327 (819)
..+...+|.+++|+|||..++.++..
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 45566789999999999999888765
No 476
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=35.12 E-value=19 Score=36.99 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=18.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHH
Q 003450 306 HVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l 328 (819)
-.+|++++|+|||..++.++..+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhC
Confidence 46789999999998888877643
No 477
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=35.09 E-value=24 Score=32.73 Aligned_cols=24 Identities=21% Similarity=0.229 Sum_probs=18.9
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l 328 (819)
...+|.+.+|+|||.++-.+...+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999998886666554
No 478
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=35.03 E-value=25 Score=33.64 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=20.0
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
+...+|.+.+|+|||.++-.+...+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457889999999999887776665
No 479
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=35.01 E-value=9.6 Score=40.22 Aligned_cols=49 Identities=18% Similarity=0.461 Sum_probs=33.2
Q ss_pred cccccccccCCCCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCCCcc
Q 003450 50 KDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLND 101 (819)
Q Consensus 50 ~~~~C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~~~ 101 (819)
....|.+|.+.-.-.....|+-.||..|+..-+.. ..-.||.|+.....
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~---~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES---EGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHH---TCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhc---CCCCCCCCCCccCC
Confidence 34689999876554445678888999998543321 23379999975544
No 480
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=34.94 E-value=20 Score=33.75 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=19.8
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
.+...+|.+.+|+|||.++-.+...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34567899999999998876665543
No 481
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=34.83 E-value=5.6 Score=29.59 Aligned_cols=45 Identities=27% Similarity=0.636 Sum_probs=30.7
Q ss_pred ccccccccCC-------CCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCCC
Q 003450 51 DDSCQACGES-------ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (819)
Q Consensus 51 ~~~C~~c~~~-------~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~ 99 (819)
...|.+|.+. ++.+....|+-.||..|+..-+.. .-.||.|+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~ 54 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKI 54 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH----CSBCTTTCCBC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc----CCCCCCCCccC
Confidence 3569999853 233455679999999999654332 33799998643
No 482
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=34.71 E-value=28 Score=32.68 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=19.3
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l 328 (819)
...+|.+.+|+|||.++-.+...+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999887766655
No 483
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=34.68 E-value=22 Score=36.91 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=19.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHH
Q 003450 306 HVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l 328 (819)
-.+|++++|+|||..+..++..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 46799999999999888877765
No 484
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=34.57 E-value=25 Score=33.51 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=18.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHH
Q 003450 307 VILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l 328 (819)
.+|.+.+|+|||.++-.+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999998887666654
No 485
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=34.53 E-value=31 Score=36.09 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=15.6
Q ss_pred cCCC-ceE-EEcCCCCcHHHHHHH
Q 003450 302 SKQT-HVI-LADEMGLGKTIQSIA 323 (819)
Q Consensus 302 ~~~~-~~i-Lade~GlGKT~~~i~ 323 (819)
..|. .+| -.+.+|+|||.++.+
T Consensus 89 l~G~n~tifAYGqTGSGKTyTm~G 112 (354)
T 3gbj_A 89 FDGYNACIFAYGQTGSGKSYTMMG 112 (354)
T ss_dssp HTTCCEEEEEEECTTSSHHHHHTB
T ss_pred hCCceeEEEeeCCCCCCCceEEec
Confidence 3444 444 468999999998853
No 486
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=34.47 E-value=14 Score=31.35 Aligned_cols=43 Identities=21% Similarity=0.470 Sum_probs=30.5
Q ss_pred ccccccccCCCC--eEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 51 DDSCQACGESEN--LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 51 ~~~C~~c~~~~~--~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
+..|.+|...-. +.. .|+-.||..|+..-+. .+...||.|...
T Consensus 15 ~~~C~iC~~~~~~p~~~--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 59 (115)
T 3l11_A 15 ECQCGICMEILVEPVTL--PCNHTLCKPCFQSTVE---KASLCCPFCRRR 59 (115)
T ss_dssp HHBCTTTCSBCSSCEEC--TTSCEECHHHHCCCCC---TTTSBCTTTCCB
T ss_pred CCCCccCCcccCceeEc--CCCCHHhHHHHHHHHh---HCcCCCCCCCcc
Confidence 467999986432 222 6999999999976543 345789999864
No 487
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=34.43 E-value=22 Score=36.40 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=19.2
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHH
Q 003450 306 HVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l 328 (819)
-.+|++++|+|||..++.++..+
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCccCHHHHHHHHHHhC
Confidence 46789999999999888877654
No 488
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=34.37 E-value=25 Score=36.89 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=17.5
Q ss_pred hhcCCCce--EEEcCCCCcHHHHHHH
Q 003450 300 SWSKQTHV--ILADEMGLGKTIQSIA 323 (819)
Q Consensus 300 ~~~~~~~~--iLade~GlGKT~~~i~ 323 (819)
.+..|.++ +-.+.||+|||.++.+
T Consensus 79 ~~~~G~n~tifAYGqTGSGKTyTM~G 104 (360)
T 1ry6_A 79 LYENGCVCSCFAYGQTGSGKTYTMLG 104 (360)
T ss_dssp HHHHCCEEEEEEECCTTSSHHHHHHB
T ss_pred hccCCceeEEEeeCCCCCCCCEEEec
Confidence 33445554 5689999999998865
No 489
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=34.36 E-value=26 Score=32.97 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=19.0
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l 328 (819)
.-.+|.+.+|+|||..+-.+...+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999998776665554
No 490
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=34.32 E-value=7.5 Score=34.56 Aligned_cols=43 Identities=21% Similarity=0.488 Sum_probs=28.5
Q ss_pred ccccccccCCCC-eEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 51 ~~~C~~c~~~~~-~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
+..|.+|...-. .+. -.|+-.||..|+..-+.. .-.||.|+..
T Consensus 53 ~~~C~iC~~~~~~~~~-~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 96 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVT-LNCAHSFCSYCINEWMKR----KIECPICRKD 96 (138)
T ss_dssp HSBCTTTCSBCSSEEE-ETTSCEEEHHHHHHHTTT----CSBCTTTCCB
T ss_pred cCCCcccCcccCCceE-CCCCCCccHHHHHHHHHc----CCcCCCCCCc
Confidence 456999986533 222 258889999998654432 2369999853
No 491
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=34.28 E-value=27 Score=31.74 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=18.1
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLAS 327 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~ 327 (819)
+...+|.+.+|+|||..+-.+...
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999776554443
No 492
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=34.20 E-value=33 Score=35.34 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=26.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P 341 (819)
.+....-|.|||.+|.+++..+...+ .++|+|-.
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~G-~rVLlvD~ 50 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARSG-KKTLVIST 50 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT-CCEEEEEC
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHCC-CcEEEEeC
Confidence 45678899999999999888887653 46777665
No 493
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=34.12 E-value=25 Score=32.52 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=19.0
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l 328 (819)
...+|.+.+|+|||.++-.+...+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999998887666554
No 494
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=34.08 E-value=27 Score=29.19 Aligned_cols=38 Identities=8% Similarity=0.162 Sum_probs=32.0
Q ss_pred hcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCC
Q 003450 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVG 659 (819)
Q Consensus 622 ~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~ 659 (819)
..+.+++|||..-.........|...|+.+..++|++.
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 34678999998877777888899999999999999864
No 495
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=34.07 E-value=35 Score=36.14 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=28.4
Q ss_pred chhHHHHHHHHH-Hhh-----cCCCceEE--EcCCCCcHHHHHHHHHHHHh
Q 003450 287 HPYQLEGLNFLR-FSW-----SKQTHVIL--ADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 287 ~~~Q~~~v~~l~-~~~-----~~~~~~iL--ade~GlGKT~~~i~~l~~l~ 329 (819)
|+.+++.+..+. ... ..+...+| .++.|+|||..+-.++..+.
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 566666664433 222 12345677 89999999998877776653
No 496
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=33.99 E-value=22 Score=32.22 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=15.1
Q ss_pred eEEEcCCCCcHHHHHHHH
Q 003450 307 VILADEMGLGKTIQSIAF 324 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~ 324 (819)
.+|.+.+|+|||..+-.+
T Consensus 4 I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 578999999999877655
No 497
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=33.95 E-value=27 Score=33.62 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=20.6
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
.+.+-.+|.+++|+|||.||-.+...+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 344556789999999999987766654
No 498
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=33.91 E-value=33 Score=26.32 Aligned_cols=15 Identities=53% Similarity=1.052 Sum_probs=11.1
Q ss_pred CCCcccCccCCCCcc
Q 003450 87 SGSWRCPECVSPLND 101 (819)
Q Consensus 87 ~~~w~C~~c~~~~~~ 101 (819)
..+|.||.|......
T Consensus 38 Pddw~CP~Cga~K~~ 52 (70)
T 1dx8_A 38 SDSFMCPACRSPKNQ 52 (70)
T ss_dssp CTTCBCTTTCCBGGG
T ss_pred CCCCcCCCCCCCHHH
Confidence 357999999975433
No 499
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.86 E-value=26 Score=29.90 Aligned_cols=43 Identities=21% Similarity=0.516 Sum_probs=29.4
Q ss_pred cccccccccCCCC-eEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 50 KDDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 50 ~~~~C~~c~~~~~-~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
+...|.+|...-. -+.-..|+-.|+..|+..-+. -.||.|...
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~ 64 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG------TGCPVCYTP 64 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT------TBCSSSCCB
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc------CCCcCCCCc
Confidence 4567999986533 222226888899999965544 469999864
No 500
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=33.84 E-value=28 Score=32.90 Aligned_cols=27 Identities=22% Similarity=0.205 Sum_probs=21.1
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHh
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~ 329 (819)
.+.-.+|.+.+|+|||.++-.+...+-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345678999999999998877766653
Done!