Query 003450
Match_columns 819
No_of_seqs 563 out of 3706
Neff 9.2
Searched_HMMs 13730
Date Tue Mar 26 01:38:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003450.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003450hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1z3ix1 c.37.1.19 (X:390-735) 100.0 3.6E-42 2.6E-46 365.8 17.5 239 523-761 3-255 (346)
2 d1z63a1 c.37.1.19 (A:432-661) 100.0 2.6E-39 1.9E-43 328.0 17.3 220 277-529 5-230 (230)
3 d1z5za1 c.37.1.19 (A:663-906) 100.0 2.7E-38 2E-42 322.9 20.2 218 531-760 1-221 (244)
4 d1z3ix2 c.37.1.19 (X:92-389) R 100.0 1.7E-38 1.3E-42 334.7 14.9 218 284-519 54-298 (298)
5 d2fwra1 c.37.1.19 (A:257-456) 99.9 1.6E-24 1.2E-28 213.1 5.9 197 527-737 2-199 (200)
6 d2fz4a1 c.37.1.19 (A:24-229) D 99.8 1E-20 7.6E-25 186.2 14.9 142 278-466 63-205 (206)
7 d1t5ia_ c.37.1.19 (A:) Spliceo 99.8 4.6E-20 3.4E-24 174.5 14.7 137 605-749 10-146 (168)
8 d1s2ma2 c.37.1.19 (A:252-422) 99.8 4.8E-20 3.5E-24 175.3 13.2 133 606-747 16-148 (171)
9 d1wp9a2 c.37.1.19 (A:201-486) 99.8 5.3E-20 3.8E-24 191.4 12.9 133 606-744 141-283 (286)
10 d1hv8a2 c.37.1.19 (A:211-365) 99.8 1.6E-19 1.1E-23 168.8 12.6 133 606-748 13-145 (155)
11 d1fuka_ c.37.1.19 (A:) Initiat 99.8 2.5E-19 1.9E-23 168.1 13.3 124 606-736 11-134 (162)
12 d1rifa_ c.37.1.23 (A:) DNA hel 99.8 1.3E-19 9.5E-24 186.5 11.5 152 284-471 112-267 (282)
13 d2bmfa2 c.37.1.14 (A:178-482) 99.8 2.7E-19 2E-23 188.2 10.9 99 621-727 175-293 (305)
14 d2j0sa2 c.37.1.19 (A:244-411) 99.8 9.7E-19 7.1E-23 165.0 13.1 130 607-745 19-148 (168)
15 d1wp9a1 c.37.1.19 (A:1-200) pu 99.8 6.1E-18 4.4E-22 165.9 16.4 166 284-482 8-181 (200)
16 d2rb4a1 c.37.1.19 (A:307-474) 99.7 9E-18 6.6E-22 158.4 13.3 124 607-737 17-146 (168)
17 d1oywa3 c.37.1.19 (A:207-406) 99.7 3.7E-17 2.7E-21 158.3 13.6 118 606-728 14-131 (200)
18 d1c4oa2 c.37.1.19 (A:410-583) 99.7 3.2E-16 2.3E-20 145.8 13.9 106 616-724 23-133 (174)
19 d1t5la2 c.37.1.19 (A:415-595) 99.7 6.8E-16 5E-20 146.1 15.8 109 613-724 20-133 (181)
20 d2p6ra3 c.37.1.19 (A:1-202) He 99.6 6.5E-15 4.7E-19 144.0 13.6 161 285-484 25-195 (202)
21 d1gkub1 c.37.1.16 (B:1-250) He 99.5 4.1E-14 3E-18 141.9 14.8 161 284-475 42-223 (237)
22 d1gm5a3 c.37.1.19 (A:286-549) 99.5 1E-13 7.5E-18 138.2 11.5 159 284-471 82-246 (264)
23 d1yksa1 c.37.1.14 (A:185-324) 99.4 3.2E-14 2.3E-18 129.9 6.9 131 301-466 4-139 (140)
24 d1a1va1 c.37.1.14 (A:190-325) 99.4 1.1E-13 8.2E-18 125.7 10.5 124 303-466 7-136 (136)
25 d1oywa2 c.37.1.19 (A:1-206) Re 99.4 1.5E-13 1.1E-17 134.6 11.4 167 285-483 25-201 (206)
26 d2eyqa3 c.37.1.19 (A:546-778) 99.4 1.4E-12 1E-16 127.4 16.7 158 284-470 54-217 (233)
27 d1hv8a1 c.37.1.19 (A:3-210) Pu 99.4 3.9E-12 2.8E-16 124.2 15.2 152 285-466 26-186 (208)
28 d1jr6a_ c.37.1.14 (A:) HCV hel 99.3 5.6E-13 4.1E-17 119.8 6.4 99 623-736 34-136 (138)
29 d2j0sa1 c.37.1.19 (A:22-243) P 99.3 7.4E-12 5.4E-16 122.8 14.5 168 269-466 17-200 (222)
30 d1t6na_ c.37.1.19 (A:) Spliceo 99.3 3.1E-11 2.3E-15 117.4 17.3 162 285-476 23-196 (207)
31 d1fp0a1 g.50.1.2 (A:19-88) Nuc 99.3 1.4E-12 9.9E-17 101.8 6.0 51 48-98 4-54 (70)
32 d1wrba1 c.37.1.19 (A:164-401) 99.3 4.6E-11 3.3E-15 118.7 18.3 177 268-475 20-225 (238)
33 d1veca_ c.37.1.19 (A:) DEAD bo 99.3 1.7E-11 1.2E-15 119.2 14.5 152 285-466 25-187 (206)
34 d1mm2a_ g.50.1.2 (A:) Mi2-beta 99.3 1.9E-12 1.4E-16 98.0 5.2 52 48-99 6-57 (61)
35 d2g9na1 c.37.1.19 (A:21-238) I 99.2 4.7E-11 3.4E-15 116.9 12.6 153 285-466 34-196 (218)
36 d2p6ra4 c.37.1.19 (A:203-403) 99.2 1.6E-11 1.2E-15 118.4 9.1 121 613-736 29-186 (201)
37 d2b2ya1 b.34.13.2 (A:108-187) 99.1 1.1E-12 7.8E-17 104.8 -1.9 56 187-242 19-78 (80)
38 d1gkub2 c.37.1.16 (B:251-498) 99.1 1.6E-12 1.2E-16 130.8 -1.3 102 607-724 11-117 (248)
39 d2dy8a1 b.34.13.2 (A:279-347) 99.1 2.1E-12 1.5E-16 100.3 -0.4 56 189-244 4-65 (69)
40 d1f62a_ g.50.1.2 (A:) Williams 99.1 1.5E-11 1.1E-15 89.5 3.2 44 54-97 3-49 (51)
41 d1gm5a4 c.37.1.19 (A:550-755) 99.1 1.4E-11 9.9E-16 118.0 3.3 118 607-727 12-141 (206)
42 d1qdea_ c.37.1.19 (A:) Initiat 99.1 6.6E-10 4.8E-14 108.1 15.4 159 284-474 31-199 (212)
43 d1a1va2 c.37.1.14 (A:326-624) 99.1 3.6E-11 2.6E-15 119.0 5.2 114 623-743 35-161 (299)
44 d1s2ma1 c.37.1.19 (A:46-251) P 99.0 1.8E-09 1.3E-13 104.8 15.7 151 285-465 23-183 (206)
45 d1q0ua_ c.37.1.19 (A:) Probabl 99.0 1.8E-09 1.3E-13 105.1 15.6 159 285-474 23-195 (209)
46 d2eyqa5 c.37.1.19 (A:779-989) 99.0 5.6E-10 4.1E-14 105.5 10.5 109 613-724 20-131 (211)
47 d1q3la_ b.34.13.2 (A:) Heteroc 99.0 2.8E-11 2E-15 87.7 0.1 48 193-241 3-50 (52)
48 d2b2ya2 b.34.13.2 (A:13-107) A 99.0 7.1E-11 5.2E-15 95.2 2.1 72 101-175 3-87 (95)
49 d2dnta1 b.34.13.2 (A:8-73) Chr 98.9 3.4E-10 2.5E-14 86.7 3.1 54 191-244 6-60 (66)
50 d1guwa_ b.34.13.2 (A:) Heteroc 98.8 6.5E-10 4.7E-14 86.6 2.9 51 192-243 14-64 (73)
51 d2dnva1 b.34.13.2 (A:7-58) Chr 98.8 5.2E-10 3.8E-14 80.8 2.0 49 191-240 4-52 (52)
52 d1g6za_ b.34.13.2 (A:) Histone 98.8 7.1E-10 5.1E-14 85.9 2.6 53 192-244 9-63 (70)
53 d2dy7a1 b.34.13.2 (A:172-252) 98.8 1.7E-09 1.2E-13 85.1 4.5 71 99-174 5-78 (81)
54 d1pfba_ b.34.13.2 (A:) Polycom 98.7 4.2E-10 3.1E-14 82.2 -0.4 49 192-241 4-52 (55)
55 d1weva_ g.50.1.2 (A:) PHD fing 98.7 2E-09 1.4E-13 88.2 1.5 47 51-97 16-71 (88)
56 d1tf5a4 c.37.1.19 (A:396-570) 98.6 7.3E-08 5.3E-12 87.7 11.2 119 606-729 16-142 (175)
57 d1wesa_ g.50.1.2 (A:) PHD Inhi 98.6 2.1E-08 1.5E-12 77.2 4.7 48 50-100 15-67 (71)
58 d2dy8a1 b.34.13.2 (A:279-347) 98.5 2.4E-08 1.8E-12 76.9 2.5 60 99-175 6-65 (69)
59 d2pnxa1 g.50.1.2 (A:195-245) I 98.4 5.7E-08 4.1E-12 69.6 2.0 43 52-97 3-50 (51)
60 d1yksa2 c.37.1.14 (A:325-623) 98.3 8.3E-07 6E-11 89.4 11.4 95 622-724 34-147 (299)
61 d1x3pa1 b.34.13.2 (A:1-54) CpS 98.3 2.9E-08 2.1E-12 70.6 -0.1 45 193-241 2-48 (54)
62 d1weea_ g.50.1.2 (A:) PHD fing 98.3 9.3E-08 6.8E-12 74.5 1.9 46 52-98 17-66 (72)
63 d2b2ya1 b.34.13.2 (A:108-187) 98.3 1.4E-07 1E-11 74.6 2.7 55 100-173 24-78 (80)
64 d1we9a_ g.50.1.2 (A:) PHD fing 98.3 1.4E-07 1E-11 71.6 2.5 49 51-99 6-59 (64)
65 d2dy7a1 b.34.13.2 (A:172-252) 98.1 1.4E-07 1.1E-11 73.9 0.2 36 206-241 39-76 (81)
66 d2dnva1 b.34.13.2 (A:7-58) Chr 98.1 2.3E-07 1.7E-11 66.6 0.1 40 99-154 4-43 (52)
67 d1nkta4 c.37.1.19 (A:397-615) 98.1 1.8E-05 1.3E-09 72.8 12.8 131 606-746 16-198 (219)
68 d1q3la_ b.34.13.2 (A:) Heteroc 98.1 1.4E-07 1E-11 67.7 -1.3 49 101-173 3-51 (52)
69 d1pfba_ b.34.13.2 (A:) Polycom 98.1 1.4E-07 1E-11 68.5 -1.4 50 100-173 4-53 (55)
70 d1wepa_ g.50.1.2 (A:) PHD fing 98.0 6.2E-07 4.5E-11 71.0 1.7 49 51-100 12-65 (79)
71 d1g6za_ b.34.13.2 (A:) Histone 98.0 1.1E-06 8.3E-11 67.4 2.6 55 100-175 9-63 (70)
72 d2dnta1 b.34.13.2 (A:8-73) Chr 97.9 7.5E-07 5.4E-11 67.6 0.4 56 98-175 5-60 (66)
73 d1x3pa1 b.34.13.2 (A:1-54) CpS 97.9 8.3E-07 6.1E-11 63.0 -0.1 48 102-174 3-50 (54)
74 d1guwa_ b.34.13.2 (A:) Heteroc 97.9 1.2E-06 9E-11 67.6 0.8 52 100-175 14-65 (73)
75 d1wema_ g.50.1.2 (A:) Death as 97.8 4.3E-07 3.1E-11 71.7 -3.2 48 49-97 14-69 (76)
76 d1tf5a3 c.37.1.19 (A:1-226,A:3 97.7 0.00017 1.3E-08 69.3 12.8 156 284-477 79-262 (273)
77 d1wewa_ g.50.1.2 (A:) Sumoylat 97.7 4.7E-06 3.4E-10 65.6 1.2 46 51-99 16-73 (78)
78 d1nkta3 c.37.1.19 (A:-15-225,A 97.6 0.00023 1.7E-08 68.8 12.1 121 284-440 96-229 (288)
79 d1w36d1 c.37.1.19 (D:2-360) Ex 97.5 0.00039 2.8E-08 71.8 13.7 58 285-346 148-208 (359)
80 d2b2ya2 b.34.13.2 (A:13-107) A 97.5 1.4E-05 1E-09 63.9 1.6 42 201-242 40-85 (95)
81 d2huga1 b.34.13.2 (A:3-57) CpS 97.1 6.5E-05 4.7E-09 52.1 1.1 47 190-240 4-50 (55)
82 d1a5ta2 c.37.1.20 (A:1-207) de 96.8 0.006 4.4E-07 57.4 12.8 47 285-331 2-51 (207)
83 d1njfa_ c.37.1.20 (A:) delta p 96.2 0.029 2.1E-06 53.7 14.0 42 290-331 17-61 (239)
84 d1sxje2 c.37.1.20 (E:4-255) Re 96.1 0.0037 2.7E-07 60.8 6.7 41 292-332 18-61 (252)
85 d1gm5a3 c.37.1.19 (A:286-549) 95.9 0.045 3.3E-06 52.8 13.9 128 537-703 81-213 (264)
86 d2gnoa2 c.37.1.20 (A:11-208) g 95.9 0.031 2.2E-06 51.8 11.9 52 290-342 2-55 (198)
87 d1sxjb2 c.37.1.20 (B:7-230) Re 95.5 0.018 1.3E-06 54.6 8.9 56 426-481 99-155 (224)
88 d1uaaa1 c.37.1.19 (A:2-307) DE 95.5 0.0085 6.2E-07 59.9 6.8 66 285-356 1-70 (306)
89 d1t5la1 c.37.1.19 (A:2-414) Nu 95.4 0.018 1.3E-06 59.6 9.1 74 289-366 15-90 (413)
90 d1sxjc2 c.37.1.20 (C:12-238) R 95.3 0.035 2.5E-06 52.5 10.3 39 292-330 21-61 (227)
91 d2eyqa3 c.37.1.19 (A:546-778) 95.1 0.079 5.8E-06 50.0 11.8 96 606-704 86-186 (233)
92 d2huga1 b.34.13.2 (A:3-57) CpS 95.0 0.0021 1.5E-07 44.5 0.2 38 100-155 6-43 (55)
93 d1wila_ g.50.1.3 (A:) Hypothet 94.8 0.0034 2.5E-07 47.0 1.0 48 50-97 14-75 (89)
94 d1pjra1 c.37.1.19 (A:1-318) DE 94.6 0.022 1.6E-06 57.2 6.9 55 285-345 11-68 (318)
95 d1iqpa2 c.37.1.20 (A:2-232) Re 94.6 0.037 2.7E-06 52.6 8.2 39 292-330 31-71 (231)
96 d1r6bx2 c.37.1.20 (X:169-436) 94.4 0.05 3.6E-06 52.6 8.8 29 303-331 38-66 (268)
97 d1jbka_ c.37.1.20 (A:) ClpB, A 93.3 0.088 6.4E-06 48.0 7.6 53 303-355 42-106 (195)
98 d1c4oa1 c.37.1.19 (A:2-409) Nu 93.2 0.11 8.4E-06 53.4 9.4 76 286-365 9-86 (408)
99 d1okkd2 c.37.1.10 (D:97-303) G 92.8 0.24 1.7E-05 45.6 10.0 36 305-341 7-42 (207)
100 d1sxjd2 c.37.1.20 (D:26-262) R 92.7 0.13 9.8E-06 48.5 8.5 25 305-329 34-58 (237)
101 d2b8ta1 c.37.1.24 (A:11-149) T 92.5 0.47 3.4E-05 40.5 10.9 36 307-343 5-40 (139)
102 d2qy9a2 c.37.1.10 (A:285-495) 92.4 0.21 1.5E-05 46.2 8.9 49 307-356 12-60 (211)
103 d1xbta1 c.37.1.24 (A:18-150) T 92.0 0.32 2.3E-05 41.2 9.1 36 307-343 5-40 (133)
104 d1sxja2 c.37.1.20 (A:295-547) 91.9 0.68 4.9E-05 43.8 12.8 24 305-328 53-76 (253)
105 d1vmaa2 c.37.1.10 (A:82-294) G 91.0 0.3 2.2E-05 45.1 8.4 37 307-343 14-50 (213)
106 d1vyxa_ g.44.1.3 (A:) IE1B pro 90.9 0.0072 5.3E-07 44.0 -2.5 49 49-99 4-57 (60)
107 d1xx6a1 c.37.1.24 (A:2-142) Th 90.9 0.17 1.2E-05 43.5 6.1 36 307-343 10-45 (141)
108 d1l8qa2 c.37.1.20 (A:77-289) C 90.2 0.73 5.3E-05 42.5 10.6 27 306-332 38-64 (213)
109 d2fmma1 b.34.13.2 (A:108-175) 90.2 0.021 1.5E-06 42.2 -0.5 26 192-217 10-35 (68)
110 g1qhh.1 c.37.1.19 (A:,B:,C:,D: 90.0 0.24 1.7E-05 54.2 8.1 76 285-366 11-94 (623)
111 d3deoa1 b.34.13.2 (A:85-128) C 89.3 0.034 2.5E-06 35.4 0.1 36 193-230 1-37 (44)
112 d1qvra2 c.37.1.20 (A:149-535) 88.5 0.25 1.8E-05 50.3 6.2 30 302-331 41-70 (387)
113 d1fnna2 c.37.1.20 (A:1-276) CD 88.4 0.3 2.2E-05 46.7 6.7 46 287-332 21-71 (276)
114 d1iyma_ g.44.1.1 (A:) EL5 RING 88.0 0.15 1.1E-05 35.9 2.8 42 52-97 6-51 (55)
115 d1e32a2 c.37.1.20 (A:201-458) 87.8 0.17 1.3E-05 48.6 4.3 43 303-349 37-79 (258)
116 d1j8yf2 c.37.1.10 (F:87-297) G 87.1 0.85 6.2E-05 41.8 8.4 39 307-345 15-53 (211)
117 d2i3ba1 c.37.1.11 (A:1-189) Ca 86.7 0.31 2.3E-05 43.4 5.2 38 305-342 2-39 (189)
118 d1ls1a2 c.37.1.10 (A:89-295) G 86.7 1.3 9.1E-05 40.5 9.4 51 305-356 10-61 (207)
119 d1cr2a_ c.37.1.11 (A:) Gene 4 82.2 1.3 9.5E-05 42.4 7.8 57 299-355 30-86 (277)
120 d1ixsb2 c.37.1.20 (B:4-242) Ho 81.5 1 7.6E-05 42.0 6.6 25 304-328 35-59 (239)
121 d1ofha_ c.37.1.20 (A:) HslU {H 80.9 0.32 2.3E-05 48.1 2.5 26 303-328 48-73 (309)
122 d1tf7a2 c.37.1.11 (A:256-497) 80.4 1.6 0.00011 40.7 7.5 55 301-356 23-77 (242)
123 d1in4a2 c.37.1.20 (A:17-254) H 78.7 1.4 0.0001 41.0 6.5 25 304-328 35-59 (238)
124 d1p9ra_ c.37.1.11 (A:) Extrace 78.7 1.2 9E-05 45.3 6.4 45 284-330 140-184 (401)
125 d1tf7a1 c.37.1.11 (A:14-255) C 78.0 1 7.6E-05 41.6 5.3 54 301-354 23-76 (242)
126 d1g6oa_ c.37.1.11 (A:) Hexamer 77.4 0.94 6.9E-05 44.7 4.8 37 291-327 153-189 (323)
127 d2ak3a2 g.41.2.1 (A:125-161) M 76.7 0.81 5.9E-05 28.8 2.5 28 64-97 3-30 (37)
128 d2f5ka1 b.34.13.3 (A:6-88) Mor 75.2 0.15 1.1E-05 39.1 -1.6 24 131-154 35-58 (83)
129 d1lv7a_ c.37.1.20 (A:) AAA dom 74.6 1.2 8.6E-05 42.3 4.5 40 303-346 44-83 (256)
130 d1zbdb_ g.50.1.1 (B:) Effector 74.4 0.69 5E-05 38.5 2.4 47 51-97 48-99 (124)
131 d1e4va2 g.41.2.1 (A:122-156) M 74.3 0.84 6.1E-05 28.3 2.1 29 64-98 3-31 (35)
132 d1zina2 g.41.2.1 (A:126-160) M 74.2 0.91 6.6E-05 28.2 2.3 28 64-97 3-30 (35)
133 d1s3ga2 g.41.2.1 (A:126-160) M 73.1 1 7.6E-05 27.9 2.4 28 64-97 3-30 (35)
134 d1w5sa2 c.37.1.20 (A:7-293) CD 72.4 1.2 9E-05 42.4 4.2 45 286-330 20-72 (287)
135 d1nlfa_ c.37.1.11 (A:) Hexamer 72.2 1.9 0.00014 41.0 5.5 56 301-356 26-90 (274)
136 d1kaga_ c.37.1.2 (A:) Shikimat 71.9 1.2 8.6E-05 38.3 3.6 24 305-328 3-26 (169)
137 d1gvnb_ c.37.1.21 (B:) Plasmid 71.9 0.9 6.6E-05 43.2 3.0 33 305-341 33-65 (273)
138 d1w44a_ c.37.1.11 (A:) NTPase 71.8 0.95 6.9E-05 44.4 3.1 44 304-349 122-166 (321)
139 d1fbva4 g.44.1.1 (A:356-434) C 71.4 0.93 6.8E-05 34.2 2.3 55 48-105 20-74 (79)
140 d1g41a_ c.37.1.20 (A:) HslU {H 71.4 1.5 0.00011 45.2 4.7 32 304-339 49-80 (443)
141 d1ixza_ c.37.1.20 (A:) AAA dom 70.8 0.99 7.2E-05 42.6 2.9 42 304-349 42-83 (247)
142 d2eyqa5 c.37.1.19 (A:779-989) 70.5 6.4 0.00046 35.5 8.3 106 333-466 31-141 (211)
143 d1akya2 g.41.2.1 (A:131-168) M 70.1 1.4 0.0001 27.8 2.5 28 64-97 3-30 (38)
144 d1ny5a2 c.37.1.20 (A:138-384) 68.8 5.9 0.00043 36.9 8.1 57 295-352 14-71 (247)
145 d1rkba_ c.37.1.1 (A:) Adenylat 67.4 1.7 0.00013 37.6 3.7 24 305-328 5-28 (173)
146 d1pzna2 c.37.1.11 (A:96-349) D 67.3 3.9 0.00029 37.9 6.6 38 293-330 24-62 (254)
147 d2dloa1 g.39.1.3 (A:8-42) Thyr 67.1 0.66 4.8E-05 28.4 0.4 25 52-78 9-35 (35)
148 d1d2na_ c.37.1.20 (A:) Hexamer 66.3 1.6 0.00012 41.1 3.3 24 305-328 41-64 (246)
149 d1y63a_ c.37.1.1 (A:) Probable 65.1 1.8 0.00013 37.6 3.4 25 304-328 5-29 (174)
150 d1v87a_ g.44.1.1 (A:) Deltex p 64.8 0.49 3.5E-05 38.8 -0.8 36 64-99 56-92 (114)
151 d1weqa_ g.50.1.2 (A:) PHD fing 63.7 3 0.00022 31.5 3.7 34 63-99 46-80 (85)
152 d1viaa_ c.37.1.2 (A:) Shikimat 63.5 2.4 0.00017 36.7 3.7 24 305-328 1-24 (161)
153 d2i1qa2 c.37.1.11 (A:65-322) D 63.3 0.89 6.5E-05 42.5 0.8 39 293-331 22-61 (258)
154 d1m8pa3 c.37.1.15 (A:391-573) 62.4 2.4 0.00017 36.9 3.6 25 306-330 8-32 (183)
155 d2cdna1 c.37.1.1 (A:1-181) Ade 62.3 2.3 0.00017 37.5 3.5 23 306-328 2-24 (181)
156 d1khta_ c.37.1.1 (A:) Adenylat 62.1 4 0.00029 35.6 5.2 34 305-339 2-35 (190)
157 d1iroa_ g.41.5.1 (A:) Rubredox 62.1 2.1 0.00015 29.2 2.3 34 65-99 5-46 (53)
158 d2bdta1 c.37.1.25 (A:1-176) Hy 61.9 2.1 0.00015 37.0 3.1 23 306-328 4-26 (176)
159 d1n0wa_ c.37.1.11 (A:) DNA rep 61.4 2.7 0.0002 37.8 4.0 38 293-330 11-49 (242)
160 d2eyqa2 c.37.1.19 (A:349-465) 61.4 3.2 0.00024 33.7 3.9 69 622-705 32-100 (117)
161 d1byia_ c.37.1.10 (A:) Dethiob 61.1 3.2 0.00023 37.5 4.4 33 307-340 4-37 (224)
162 d1svma_ c.37.1.20 (A:) Papillo 61.0 3.9 0.00029 40.6 5.3 30 299-328 149-178 (362)
163 d1ak2a1 c.37.1.1 (A:14-146,A:1 60.8 2.8 0.00021 37.2 3.8 25 304-328 3-27 (190)
164 d3dplr1 g.44.1.1 (R:19-106) RI 59.9 0.85 6.2E-05 35.3 -0.1 32 63-98 51-82 (88)
165 d1brfa_ g.41.5.1 (A:) Rubredox 59.0 2.1 0.00015 29.2 1.9 33 65-98 4-44 (53)
166 d1dx8a_ g.41.5.1 (A:) Rubredox 58.5 3.7 0.00027 29.7 3.2 36 64-100 8-51 (70)
167 d1bora_ g.44.1.1 (A:) Acute pr 58.2 4.9 0.00036 27.7 3.8 41 50-98 5-46 (56)
168 d1zaka1 c.37.1.1 (A:3-127,A:15 57.8 3.4 0.00025 36.6 3.8 24 305-328 4-27 (189)
169 d2dsxa1 g.41.5.1 (A:1-52) Rubr 57.7 2.7 0.0002 28.5 2.2 34 64-98 4-45 (52)
170 d2iyva1 c.37.1.2 (A:2-166) Shi 57.5 3.5 0.00026 35.6 3.8 24 305-328 2-25 (165)
171 d1e6ca_ c.37.1.2 (A:) Shikimat 57.2 3.7 0.00027 35.6 3.9 24 305-328 3-26 (170)
172 d1lw7a2 c.37.1.1 (A:220-411) T 57.2 2.5 0.00018 36.9 2.8 25 304-328 7-31 (192)
173 d1qhxa_ c.37.1.3 (A:) Chloramp 57.1 3.1 0.00023 35.9 3.4 25 304-328 3-27 (178)
174 d1szpa2 c.37.1.11 (A:145-395) 56.8 3.1 0.00023 38.3 3.5 36 293-328 22-58 (251)
175 d1zina1 c.37.1.1 (A:1-125,A:16 55.7 3.5 0.00026 36.1 3.5 23 306-328 2-24 (182)
176 d1ly1a_ c.37.1.1 (A:) Polynucl 55.5 3.5 0.00026 34.7 3.4 20 307-326 5-24 (152)
177 d1s3ga1 c.37.1.1 (A:1-125,A:16 55.3 3.6 0.00026 36.2 3.5 23 306-328 2-24 (182)
178 d1akya1 c.37.1.1 (A:3-130,A:16 54.5 3.8 0.00027 36.0 3.5 23 306-328 4-26 (180)
179 d1knqa_ c.37.1.17 (A:) Glucona 54.4 3.9 0.00028 35.2 3.5 24 305-328 7-30 (171)
180 d1e4va1 c.37.1.1 (A:1-121,A:15 54.3 3.6 0.00026 36.0 3.3 23 306-328 2-24 (179)
181 d1s24a_ g.41.5.1 (A:) Two-iron 54.2 5.1 0.00037 27.5 3.2 33 65-98 6-46 (56)
182 d1v5wa_ c.37.1.11 (A:) Meiotic 54.0 8.7 0.00063 35.2 6.4 62 293-354 25-93 (258)
183 d1chca_ g.44.1.1 (A:) Immediat 53.3 1.3 9.4E-05 32.2 -0.1 44 51-98 5-49 (68)
184 d6rxna_ g.41.5.1 (A:) Rubredox 53.2 3.7 0.00027 26.9 2.2 33 65-98 5-38 (45)
185 d2ak3a1 c.37.1.1 (A:0-124,A:16 53.0 3.5 0.00025 36.7 2.9 25 304-328 6-30 (189)
186 d1g5ta_ c.37.1.11 (A:) ATP:cor 52.3 50 0.0036 27.7 10.4 59 421-479 87-149 (157)
187 d1xpja_ c.108.1.18 (A:) Hypoth 52.3 7.6 0.00056 31.7 4.7 46 611-656 27-85 (124)
188 d1e9ra_ c.37.1.11 (A:) Bacteri 52.0 5.2 0.00038 40.7 4.6 40 303-343 49-88 (433)
189 d3adka_ c.37.1.1 (A:) Adenylat 51.9 4.8 0.00035 35.7 3.8 39 302-346 6-44 (194)
190 d1um8a_ c.37.1.20 (A:) ClpX {H 51.8 5.6 0.00041 39.5 4.6 25 303-327 67-91 (364)
191 d1a7ia1 g.39.1.3 (A:8-35) Cyst 50.9 3.8 0.00028 22.8 1.6 24 53-78 2-28 (28)
192 d1htwa_ c.37.1.18 (A:) Hypothe 50.9 9 0.00066 32.7 5.2 22 307-328 36-57 (158)
193 d1u94a1 c.37.1.11 (A:6-268) Re 50.8 8.8 0.00064 36.0 5.6 48 304-352 54-102 (263)
194 d1r7ra3 c.37.1.20 (A:471-735) 50.5 4.2 0.00031 38.4 3.3 39 303-345 40-78 (265)
195 d1neea2 g.59.1.1 (A:99-135) Zi 50.2 3.7 0.00027 25.5 1.8 20 53-72 3-31 (37)
196 d1np6a_ c.37.1.10 (A:) Molybdo 50.0 7.3 0.00053 33.1 4.6 27 307-333 5-31 (170)
197 d1g25a_ g.44.1.1 (A:) TFIIH Ma 49.8 1.7 0.00012 31.2 0.1 45 51-98 3-52 (65)
198 d1zp6a1 c.37.1.25 (A:6-181) Hy 49.3 4.2 0.00031 35.1 2.9 21 304-324 4-24 (176)
199 d1pd0a5 g.41.10.1 (A:216-300) 49.1 3.2 0.00023 31.6 1.6 35 60-98 10-44 (85)
200 d1teva_ c.37.1.1 (A:) UMP/CMP 49.0 5.2 0.00038 35.3 3.5 22 307-328 4-25 (194)
201 d1ukza_ c.37.1.1 (A:) Uridylat 48.6 4.6 0.00034 35.8 3.1 23 306-328 10-32 (196)
202 d1nksa_ c.37.1.1 (A:) Adenylat 48.1 7.7 0.00056 33.7 4.6 34 307-341 4-37 (194)
203 d1knxa2 c.91.1.2 (A:133-309) H 48.0 4.8 0.00035 35.3 2.9 24 303-326 14-37 (177)
204 d1v5na_ g.49.1.3 (A:) Pdi-like 47.3 3.7 0.00027 31.5 1.8 32 52-83 48-81 (89)
205 d1w36b1 c.37.1.19 (B:1-485) Ex 47.2 9.1 0.00066 39.1 5.7 27 304-330 16-42 (485)
206 d1em8a_ c.128.1.1 (A:) DNA pol 46.5 11 0.00084 31.6 5.2 47 608-654 20-70 (147)
207 d1rutx1 g.39.1.3 (X:19-48) LIM 46.3 4.5 0.00033 23.8 1.6 25 52-78 3-30 (30)
208 d1x6va3 c.37.1.4 (A:34-228) Ad 45.8 4.1 0.00029 35.9 2.2 23 308-330 23-45 (195)
209 d1b8ta1 g.39.1.3 (A:1-35) Cyst 45.7 3.9 0.00028 24.1 1.2 25 52-78 8-35 (35)
210 d1kkma_ c.91.1.2 (A:) HPr kina 45.2 6.1 0.00045 34.5 3.2 24 303-326 13-36 (176)
211 d1ko7a2 c.91.1.2 (A:130-298) H 45.2 5.8 0.00043 34.4 3.0 25 302-326 13-37 (169)
212 d1nn5a_ c.37.1.1 (A:) Thymidyl 44.6 9.6 0.0007 34.2 4.7 25 309-333 8-32 (209)
213 d1qf9a_ c.37.1.1 (A:) UMP/CMP 44.5 6.4 0.00047 34.7 3.4 23 306-328 8-30 (194)
214 d1mo6a1 c.37.1.11 (A:1-269) Re 44.1 14 0.001 34.7 5.8 60 293-352 47-108 (269)
215 d1k81a_ g.59.1.1 (A:) Zinc-bin 43.2 3.3 0.00024 25.6 0.7 20 53-72 2-30 (36)
216 d1q3ta_ c.37.1.1 (A:) CMP kina 42.4 7.6 0.00055 35.0 3.6 20 309-328 8-27 (223)
217 d1jm7b_ g.44.1.1 (B:) bard1 RI 39.7 8.6 0.00062 29.7 3.0 41 51-97 22-63 (97)
218 d1r6bx3 c.37.1.20 (X:437-751) 39.2 13 0.00098 35.7 5.0 23 306-328 54-76 (315)
219 d1g8pa_ c.37.1.20 (A:) ATPase 39.2 6.4 0.00046 38.4 2.6 44 429-472 128-185 (333)
220 d4cpai_ g.3.2.1 (I:) Carboxype 39.0 8.6 0.00062 22.7 2.0 16 84-99 15-30 (37)
221 d1ry6a_ c.37.1.9 (A:) Kinesin 38.7 8.9 0.00065 37.3 3.6 25 299-323 78-104 (330)
222 d1v8ka_ c.37.1.9 (A:) Kinesin 38.6 6.7 0.00049 38.9 2.6 22 302-323 110-133 (362)
223 d1ur6b_ g.44.1.1 (B:) Not-4 N- 38.5 2.9 0.00021 28.3 -0.1 43 54-99 3-49 (52)
224 d1rz3a_ c.37.1.6 (A:) Hypothet 38.0 24 0.0018 30.3 6.4 23 309-331 27-49 (198)
225 d1bifa1 c.37.1.7 (A:37-249) 6- 38.0 13 0.00092 32.9 4.4 25 307-331 5-29 (213)
226 d1xpua3 c.37.1.11 (A:129-417) 37.6 13 0.00095 35.1 4.4 48 292-340 32-79 (289)
227 d1gkub1 c.37.1.16 (B:1-250) He 36.1 46 0.0034 29.8 8.3 66 606-671 68-141 (237)
228 d1xjca_ c.37.1.10 (A:) Molybdo 36.1 13 0.00096 31.5 4.0 30 309-338 6-35 (165)
229 d1ye8a1 c.37.1.11 (A:1-178) Hy 35.4 11 0.00082 32.2 3.5 23 306-328 2-24 (178)
230 d1mvoa_ c.23.1.1 (A:) PhoP rec 34.9 37 0.0027 26.8 6.5 27 626-652 4-30 (121)
231 d4tmka_ c.37.1.1 (A:) Thymidyl 34.5 21 0.0016 31.5 5.4 37 305-341 3-39 (210)
232 d1kgsa2 c.23.1.1 (A:2-123) Pho 33.6 88 0.0064 24.4 8.8 92 622-720 23-118 (122)
233 d1ak2a2 g.41.2.1 (A:147-176) M 33.3 12 0.00084 22.0 2.0 24 68-97 2-25 (30)
234 d1peya_ c.23.1.1 (A:) Sporulat 33.0 28 0.0021 27.6 5.4 28 625-652 2-29 (119)
235 d1ckea_ c.37.1.1 (A:) CMP kina 32.9 13 0.00094 33.2 3.5 21 308-328 7-27 (225)
236 d1lkxa_ c.37.1.9 (A:) Myosin S 32.8 21 0.0016 38.3 5.8 43 286-329 67-111 (684)
237 d2f5ka1 b.34.13.3 (A:6-88) Mor 32.8 2.9 0.00021 31.5 -1.0 37 196-232 24-60 (83)
238 d1sq5a_ c.37.1.6 (A:) Pantothe 32.7 17 0.0012 34.7 4.5 33 309-341 85-117 (308)
239 d1x62a2 g.39.1.3 (A:8-42) PDZ 32.5 7.8 0.00057 23.0 1.1 27 52-78 9-35 (35)
240 d1o5oa_ c.61.1.1 (A:) Uracil P 31.6 44 0.0032 29.6 6.9 57 304-363 125-182 (210)
241 d1qvra3 c.37.1.20 (A:536-850) 31.2 13 0.00097 35.7 3.4 23 307-329 56-78 (315)
242 d1xp8a1 c.37.1.11 (A:15-282) R 30.5 27 0.002 32.5 5.5 48 304-352 57-105 (268)
243 d2a9pa1 c.23.1.1 (A:2-118) DNA 30.4 26 0.0019 27.7 4.7 28 626-653 2-29 (117)
244 d2dj8a1 g.85.1.1 (A:8-54) Zinc 29.8 15 0.0011 24.1 2.4 22 50-72 7-28 (47)
245 d1m7ga_ c.37.1.4 (A:) Adenosin 29.6 16 0.0012 32.6 3.5 24 306-329 26-49 (208)
246 d1jm7a_ g.44.1.1 (A:) brca1 RI 29.5 5.6 0.00041 31.3 0.1 46 51-98 21-67 (103)
247 d1cp2a_ c.37.1.10 (A:) Nitroge 28.6 17 0.0012 33.8 3.6 30 309-339 6-35 (269)
248 d2afhe1 c.37.1.10 (E:1-289) Ni 28.5 15 0.0011 34.7 3.2 29 310-339 8-36 (289)
249 d1wika_ c.47.1.1 (A:) Thioredo 28.3 89 0.0065 24.1 7.6 45 624-668 14-64 (109)
250 d1yt8a4 c.46.1.2 (A:243-372) T 27.7 30 0.0022 27.9 4.7 38 623-660 79-116 (130)
251 d1g3qa_ c.37.1.10 (A:) Cell di 27.5 21 0.0015 32.0 4.1 31 308-339 7-37 (237)
252 d1x3ha1 g.39.1.3 (A:8-42) Leup 27.3 7.6 0.00055 23.8 0.4 24 52-77 9-34 (35)
253 d1yj5a2 c.37.1.1 (A:351-522) 5 27.0 14 0.001 31.8 2.5 17 306-322 16-32 (172)
254 d1d0xa2 c.37.1.9 (A:2-33,A:80- 27.0 31 0.0023 37.1 5.9 43 286-329 106-150 (712)
255 d1byka_ c.93.1.1 (A:) Trehalos 26.8 92 0.0067 27.8 8.8 45 634-678 18-62 (255)
256 d2qm8a1 c.37.1.10 (A:5-327) Me 26.8 49 0.0036 31.5 6.8 55 289-343 33-91 (323)
257 d1w7ja2 c.37.1.9 (A:63-792) My 26.8 31 0.0023 37.3 5.9 43 286-329 75-119 (730)
258 d1u0sy_ c.23.1.1 (Y:) CheY pro 26.7 38 0.0028 26.7 5.1 28 624-651 1-28 (118)
259 d1br2a2 c.37.1.9 (A:80-789) My 26.6 32 0.0023 37.0 5.9 28 302-329 89-116 (710)
260 d1faqa_ g.49.1.1 (A:) RAF-1 {H 26.6 15 0.0011 24.6 1.9 29 51-79 14-43 (52)
261 d1ihua2 c.37.1.10 (A:308-586) 26.6 24 0.0018 32.7 4.4 38 302-340 17-55 (279)
262 d2obba1 c.108.1.25 (A:1-122) H 26.5 29 0.0021 27.9 4.2 43 613-655 26-69 (122)
263 d1ny5a1 c.23.1.1 (A:1-137) Tra 26.0 85 0.0062 25.2 7.4 45 623-671 23-67 (137)
264 d1ccwa_ c.23.6.1 (A:) Glutamat 26.0 1.1E+02 0.0079 24.7 8.0 59 624-687 3-65 (137)
265 d1lvga_ c.37.1.1 (A:) Guanylat 25.7 23 0.0017 30.9 3.7 23 306-328 2-24 (190)
266 d2mysa2 c.37.1.9 (A:4-33,A:80- 25.6 32 0.0023 37.5 5.7 43 286-329 104-148 (794)
267 d1kk8a2 c.37.1.9 (A:1-28,A:77- 25.3 30 0.0022 37.7 5.4 43 286-329 102-146 (789)
268 d1tbna_ g.49.1.1 (A:) Protein 24.4 18 0.0013 25.4 2.3 29 51-79 19-52 (66)
269 d1dbwa_ c.23.1.1 (A:) Transcri 24.2 61 0.0045 25.5 6.0 26 626-651 5-30 (123)
270 d2fiya1 e.59.1.1 (A:19-308) Fd 24.1 18 0.0013 34.2 2.7 37 50-98 163-213 (290)
271 d1x61a1 g.39.1.3 (A:8-34) Thyr 23.9 15 0.0011 19.8 1.1 11 68-78 17-27 (27)
272 d1ihua1 c.37.1.10 (A:1-296) Ar 23.8 29 0.0021 32.3 4.4 34 306-340 10-43 (296)
273 d1uj2a_ c.37.1.6 (A:) Uridine- 23.5 19 0.0014 31.8 2.8 21 309-329 7-27 (213)
274 d1wiga1 g.39.1.3 (A:1-32) Acti 23.2 16 0.0011 21.0 1.2 8 70-77 24-31 (32)
275 d1dsva_ g.40.1.1 (A:) Nucleic 23.2 14 0.001 21.6 1.0 12 65-76 4-15 (31)
276 d1j2oa1 g.39.1.3 (A:1-30) Rhom 23.2 20 0.0015 20.8 1.8 26 52-77 4-30 (30)
277 d2p67a1 c.37.1.10 (A:1-327) LA 23.1 64 0.0046 30.7 6.8 38 307-344 57-95 (327)
278 d1x64a1 g.39.1.3 (A:8-52) PDZ 22.9 15 0.0011 23.3 1.2 27 52-78 19-45 (45)
279 d1odfa_ c.37.1.6 (A:) Hypothet 22.8 22 0.0016 33.4 3.1 22 309-330 32-53 (286)
280 d1hyqa_ c.37.1.10 (A:) Cell di 22.6 34 0.0024 30.4 4.4 31 308-339 6-36 (232)
281 d1mv5a_ c.37.1.12 (A:) Multidr 22.3 22 0.0016 32.6 2.9 18 302-319 26-43 (242)
282 d1rutx3 g.39.1.3 (X:83-113) LI 22.2 9.9 0.00072 22.4 0.2 26 52-78 3-31 (31)
283 d1zh2a1 c.23.1.1 (A:2-120) Tra 21.5 55 0.004 25.6 5.1 91 622-720 22-116 (119)
284 d1ys7a2 c.23.1.1 (A:7-127) Tra 21.5 1.7E+02 0.012 22.6 9.8 93 621-720 22-118 (121)
285 d2fnaa2 c.37.1.20 (A:1-283) Ar 21.4 28 0.002 31.8 3.6 26 303-328 28-53 (283)
286 d2buda1 b.34.13.3 (A:367-454) 21.3 7.2 0.00052 29.4 -0.7 23 131-153 44-66 (88)
287 d1cl4a_ g.40.1.1 (A:) Nucleoca 21.3 15 0.0011 21.6 0.9 12 65-76 4-15 (32)
288 d1yioa2 c.23.1.1 (A:3-130) Res 21.3 1.3E+02 0.0095 23.5 7.6 94 622-720 24-119 (128)
289 d1znwa1 c.37.1.1 (A:20-201) Gu 21.3 30 0.0022 29.6 3.6 22 304-325 2-23 (182)
290 d2jdid3 c.37.1.11 (D:82-357) C 21.2 48 0.0035 30.8 5.2 37 292-329 57-93 (276)
291 d1bg2a_ c.37.1.9 (A:) Kinesin 21.2 31 0.0023 32.9 4.0 25 299-323 69-95 (323)
292 d1l2ta_ c.37.1.12 (A:) MJ0796 20.9 20 0.0015 32.5 2.3 26 302-328 29-54 (230)
293 d1a7ja_ c.37.1.6 (A:) Phosphor 20.7 14 0.001 34.9 1.2 26 308-333 8-33 (288)
294 d1tuea_ c.37.1.20 (A:) Replica 20.6 50 0.0036 29.0 4.8 23 306-328 55-77 (205)
295 d1x88a1 c.37.1.9 (A:18-362) Ki 20.3 34 0.0025 33.1 4.1 24 299-322 74-99 (345)
296 d1gmxa_ c.46.1.3 (A:) Sulfurtr 20.2 40 0.0029 26.0 3.8 48 613-661 48-96 (108)
No 1
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=100.00 E-value=3.6e-42 Score=365.82 Aligned_cols=239 Identities=32% Similarity=0.558 Sum_probs=202.2
Q ss_pred hhh-hcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHhcCCCcccCCCC----CCcc--
Q 003450 523 DVM-KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG-GAQISLINVVMELRKLCCHPYMLEGVE----PDIE-- 594 (819)
Q Consensus 523 dv~-~~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~-~~~~~~~~~~~~lr~~~~hp~l~~~~~----~~~~-- 594 (819)
+++ +.||||.+++++|+||+.|+++|+.++........... ....+.++.++.||++|+||+|+.... ....
T Consensus 3 ~vl~k~LP~K~e~vv~v~LS~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~L~~l~~LRkiCnHP~L~~~~~~~~~~~~~~~ 82 (346)
T d1z3ix1 3 DILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGA 82 (346)
T ss_dssp GGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTG
T ss_pred hhhhccCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHhCCHHHhhhhhccccccccch
Confidence 454 58999999999999999999999999876543322222 233467889999999999999862110 0000
Q ss_pred -----CcHHHHHHhhhcCchHHHHHHHHHHHH-hcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHH
Q 003450 595 -----DTNESFKQLLESSGKLQLLDKMMVKLK-EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (819)
Q Consensus 595 -----~~~~~~~~l~~~s~Kl~~l~~ll~~l~-~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~ 668 (819)
............|+|+..|.++|..+. ..|+|+||||+|+.++++|+++|...|+++.+++|+++..+|+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~ 162 (346)
T d1z3ix1 83 LDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVE 162 (346)
T ss_dssp GGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHH
T ss_pred hhhccccccccccccccCHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHH
Confidence 000000112346999999999998875 56899999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 003450 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (819)
Q Consensus 669 ~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~~ 748 (819)
+||++..+.++||+++++||+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++.||+||+|++++..
T Consensus 163 ~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~~ 242 (346)
T d1z3ix1 163 RFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAH 242 (346)
T ss_dssp HHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHH
T ss_pred hhhcccccceeeeecchhhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEeCCCHHHHHHHHHHH
Confidence 99998777778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHhchhh
Q 003450 749 KMVLEHLVVGRLK 761 (819)
Q Consensus 749 K~~l~~~v~~~~~ 761 (819)
|..+.+.++++..
T Consensus 243 K~~l~~~v~~~~~ 255 (346)
T d1z3ix1 243 KKALSSCVVDEEQ 255 (346)
T ss_dssp HHHTSCCCCSCSS
T ss_pred HHHHHHHHhCCch
Confidence 9999999997644
No 2
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=100.00 E-value=2.6e-39 Score=327.99 Aligned_cols=220 Identities=35% Similarity=0.724 Sum_probs=190.9
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-CCceEEEecCcchHHHHHHHHHH
Q 003450 277 SPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATW 355 (819)
Q Consensus 277 ~p~~~~~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~-~~~~LIv~P~~ll~qW~~e~~~~ 355 (819)
+|..+. .+|+|||++|++||......+.|+||||+||+|||+++++++..+.... ..++|||||.+++.||.+|+.+|
T Consensus 5 ~P~~~~-~~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~~~~~~~~LIv~p~~l~~~W~~e~~~~ 83 (230)
T d1z63a1 5 EPYNIK-ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKF 83 (230)
T ss_dssp CCCSCS-SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHHHHHHHHHHH
T ss_pred Cchhhh-cchhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhhhcccccccceecchhhhhHHHHHHHhh
Confidence 455555 4799999999999998888999999999999999999999998887654 46999999999999999999999
Q ss_pred cCCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEec
Q 003450 356 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (819)
Q Consensus 356 ~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvD 435 (819)
.+...+..+.+..... ....++|++++|+.+... ..+..++|++||+|
T Consensus 84 ~~~~~~~~~~~~~~~~-------------------------------~~~~~~vvi~~~~~~~~~-~~l~~~~~~~vI~D 131 (230)
T d1z63a1 84 APHLRFAVFHEDRSKI-------------------------------KLEDYDIILTTYAVLLRD-TRLKEVEWKYIVID 131 (230)
T ss_dssp CTTSCEEECSSSTTSC-------------------------------CGGGSSEEEEEHHHHTTC-HHHHTCCEEEEEEE
T ss_pred cccccceeeccccchh-------------------------------hccCcCEEEeeHHHHHhH-HHHhcccceEEEEE
Confidence 9887777654432221 224678999999999764 44677899999999
Q ss_pred ccccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhc---cchHHHHHHHHHHH
Q 003450 436 EGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD---INQEEQISRLHRML 512 (819)
Q Consensus 436 EaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~---~~~~~~~~~l~~~l 512 (819)
|||++||..+..++++..++++++|+|||||++|++.|+|++++||+|+.+++...|.+.|.. ........+|+.++
T Consensus 132 Eah~~k~~~s~~~~~~~~l~a~~r~~LTgTPi~n~~~dl~~ll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~L~~~l 211 (230)
T d1z63a1 132 EAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII 211 (230)
T ss_dssp TGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcccccchhhhhhhhhhccceEEEEecchHHhHHHHHHHHHHhhCCCcCCCHHHHHHHHhhhhhccCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999988864 23356678899999
Q ss_pred hhHHHHHhhhh--hhhcCC
Q 003450 513 APHLLRRVKKD--VMKELP 529 (819)
Q Consensus 513 ~~~~lrr~k~d--v~~~lp 529 (819)
+++++||+|.| +..+||
T Consensus 212 ~~~~lRr~K~d~~v~~dLP 230 (230)
T d1z63a1 212 SPFILRRTKYDKAIINDLP 230 (230)
T ss_dssp TTTEECCCTTCHHHHTTSC
T ss_pred hccEEEEecCCccHhhcCC
Confidence 99999999998 567787
No 3
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=100.00 E-value=2.7e-38 Score=322.89 Aligned_cols=218 Identities=28% Similarity=0.454 Sum_probs=180.4
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCc
Q 003450 531 KKELILRVELSSKQKEYYKAILTRNYQILTRRGGA--QISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSG 608 (819)
Q Consensus 531 ~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~--~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~ 608 (819)
|.++.++|+||+.|+++|+.++......+....+. ...++..+++|||+|+||+++.+.+.. +..|+
T Consensus 1 Kie~~v~~~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~iL~~l~~Lrqic~hP~l~~~~~~~-----------~~~S~ 69 (244)
T d1z5za1 1 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQS-----------VRRSG 69 (244)
T ss_dssp CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSCCC-----------STTCH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHhhhcCCccccccccc-----------hhhhh
Confidence 46889999999999999999998876655432221 224678889999999999998775543 34789
Q ss_pred hHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhC-CCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccc
Q 003450 609 KLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (819)
Q Consensus 609 Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~-g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~ 687 (819)
|+..|.+++..+...|+|+||||+|..++++|..+|... |+++.+++|+++..+|++++++|+++++. .++++++.++
T Consensus 70 K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~-~vll~~~~~~ 148 (244)
T d1z5za1 70 KMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSV-KFIVLSVKAG 148 (244)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTC-CEEEEECCTT
T ss_pred HHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhccccc-hhcccccccc
Confidence 999999999999999999999999999999999999754 89999999999999999999999986554 4588999999
Q ss_pred cccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHhhhhHHHHhchh
Q 003450 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRL 760 (819)
Q Consensus 688 ~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~~K~~l~~~v~~~~ 760 (819)
|+||||+.|++||++|++|||..+.||+||+||+||+++|.||+|++.+|+||.|++++..|..+++.+++..
T Consensus 149 g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~~Tiee~i~~~~~~K~~~~~~~~~~~ 221 (244)
T d1z5za1 149 GFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSG 221 (244)
T ss_dssp CCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGT
T ss_pred ccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998763
No 4
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=100.00 E-value=1.7e-38 Score=334.72 Aligned_cols=218 Identities=36% Similarity=0.567 Sum_probs=181.6
Q ss_pred CCCchhHHHHHHHHHHhh-----cCCCceEEEcCCCCcHHHHHHHHHHHHhcCC------CCceEEEecCcchHHHHHHH
Q 003450 284 GSLHPYQLEGLNFLRFSW-----SKQTHVILADEMGLGKTIQSIAFLASLFGER------ISPHLVVAPLSTLRNWEREF 352 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~-----~~~~~~iLade~GlGKT~~~i~~l~~l~~~~------~~~~LIv~P~~ll~qW~~e~ 352 (819)
..|||||++||+||..++ ..+.||||||+||+|||+|+|+++..+.... .+++|||||.+++.||.+||
T Consensus 54 ~~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~sl~~qW~~Ei 133 (298)
T d1z3ix2 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEV 133 (298)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhcccccCCCCcEEEEccchhhHHHHHHH
Confidence 479999999999997654 3567899999999999999999998887543 23799999999999999999
Q ss_pred HHHcCC-CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceE
Q 003450 353 ATWAPQ-MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQC 431 (819)
Q Consensus 353 ~~~~p~-~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~ 431 (819)
.+|++. ..++.++|....+......++.... .....++++|+||+.+..+.+.+...+|++
T Consensus 134 ~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~v~i~sy~~~~~~~~~l~~~~~~~ 195 (298)
T d1z3ix2 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQ------------------GMRIPTPILIISYETFRLHAEVLHKGKVGL 195 (298)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCC------------------SSCCSCCEEEEEHHHHHHHTTTTTTSCCCE
T ss_pred HhhcCCceeEEEEeCchHHHHHHHHHHhhhcc------------------CccccceEEEEeecccccchhcccccceee
Confidence 999964 5666777765554332222221111 122457899999999999999999999999
Q ss_pred EEecccccccCcccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCCCCCCChHHHHHHHhcc------------
Q 003450 432 MIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI------------ 499 (819)
Q Consensus 432 lIvDEaH~~kn~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~~~~~~~~~f~~~~~~~------------ 499 (819)
||+||||++||..++.++++..+++.++|+|||||++|++.|+|++++||+|+.|++...|.+.|...
T Consensus 196 vI~DEaH~ikn~~s~~~~a~~~l~~~~rllLTGTPi~N~~~dl~~ll~fl~p~~~~~~~~F~~~f~~pi~~~~~~~~~~~ 275 (298)
T d1z3ix2 196 VICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDK 275 (298)
T ss_dssp EEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSH
T ss_pred eecccccccccccchhhhhhhccccceeeeecchHHhhhhHHHHHHHHHhCCCcCCCHHHHHHHHhhHHHhCcccCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988531
Q ss_pred ---chHHHHHHHHHHHhhHHHHH
Q 003450 500 ---NQEEQISRLHRMLAPHLLRR 519 (819)
Q Consensus 500 ---~~~~~~~~l~~~l~~~~lrr 519 (819)
.....+.+|+.+++++++||
T Consensus 276 ~~~~~~~~l~~L~~~l~~~~lRR 298 (298)
T d1z3ix2 276 DRAAGEQKLQELISIVNRCLIRR 298 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHEECC
T ss_pred HHHHHHHHHHHHHHHhhhheeCC
Confidence 12245778999999999886
No 5
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.89 E-value=1.6e-24 Score=213.09 Aligned_cols=197 Identities=15% Similarity=0.213 Sum_probs=142.6
Q ss_pred cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccCcHHHHHHhhhc
Q 003450 527 ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLES 606 (819)
Q Consensus 527 ~lp~~~~~~v~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~ 606 (819)
.|||+....++|+||+.|++.|+.+.......+................++..+.++.. ........+........
T Consensus 2 ~L~py~v~~i~V~Lt~~E~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~ 77 (200)
T d2fwra1 2 HLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERA----YEALRAWEEARRIAFNS 77 (200)
T ss_dssp CCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSS----STTTHHHHHHHHHHHSC
T ss_pred cCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCHHH----HHHHHHHHHHHHHhhCc
Confidence 68999999999999999999998765543322211111000000000000000111100 00000111222334456
Q ss_pred CchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEecccc
Q 003450 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (819)
Q Consensus 607 s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a 686 (819)
+.|+..|.+++... .++|+||||++..+++.|.+.|.. ..++|.++..+|+++++.|++++.. +|++|++
T Consensus 78 ~~K~~~l~~ll~~~--~~~k~lvf~~~~~~~~~l~~~l~~-----~~i~g~~~~~~R~~~l~~F~~~~~~---vLv~~~~ 147 (200)
T d2fwra1 78 KNKIRKLREILERH--RKDKIIIFTRHNELVYRISKVFLI-----PAITHRTSREEREEILEGFRTGRFR---AIVSSQV 147 (200)
T ss_dssp SHHHHHHHHHHHHT--SSSCBCCBCSCHHHHHHHHHHTTC-----CBCCSSSCSHHHHTHHHHHHHSSCS---BCBCSSC
T ss_pred HHHHHHHHHHHHhC--CCCcEEEEeCcHHHHHHHHhhcCc-----ceeeCCCCHHHHHHHHHHhhcCCee---eeeecch
Confidence 78999999999873 578999999999999999888753 3479999999999999999876543 5889999
Q ss_pred ccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCC-cEEEEEEEeCCC
Q 003450 687 GGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN-KVMIFRLITRGS 737 (819)
Q Consensus 687 ~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~-~V~v~~li~~~T 737 (819)
+++|||++.+++||++|++|||..++|++||++|.||.+ .+.||+|+++||
T Consensus 148 ~~~Gidl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~~~T 199 (200)
T d2fwra1 148 LDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 199 (200)
T ss_dssp CCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred hhcccCCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCCcEEEEEEEecCCC
Confidence 999999999999999999999999999999999999975 699999999998
No 6
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.83 E-value=1e-20 Score=186.19 Aligned_cols=142 Identities=22% Similarity=0.297 Sum_probs=108.6
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHc
Q 003450 278 PEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA 356 (819)
Q Consensus 278 p~~~~~~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~ 356 (819)
|......+|||||.++++.+ ..+++++|+++||+|||+++++++..+ .+++|||||. +++.||.+++.+|.
T Consensus 63 ~~~~~~~~Lr~yQ~eav~~~----~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~Liv~p~~~L~~q~~~~~~~~~ 134 (206)
T d2fz4a1 63 PYFDAEISLRDYQEKALERW----LVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGIFG 134 (206)
T ss_dssp CCCCCCCCCCHHHHHHHHHH----TTTSEEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHHHHHHHGGGC
T ss_pred CCCCCCCCcCHHHHHHHHHH----HhCCCcEEEeCCCCCceehHHhHHHHh----cCceeEEEcccchHHHHHHHHHhhc
Confidence 44444568999999999876 466788999999999999998887654 3589999996 78899999999987
Q ss_pred CCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecc
Q 003450 357 PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDE 436 (819)
Q Consensus 357 p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDE 436 (819)
+. .+..+.|... ....++++||+++......+. -+|++||+||
T Consensus 135 ~~-~~~~~~~~~~-----------------------------------~~~~i~i~t~~~~~~~~~~~~-~~~~lvIiDE 177 (206)
T d2fz4a1 135 EE-YVGEFSGRIK-----------------------------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDE 177 (206)
T ss_dssp GG-GEEEESSSCB-----------------------------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEEC
T ss_pred cc-chhhcccccc-----------------------------------cccccccceehhhhhhhHhhC-CcCCEEEEEC
Confidence 43 4444443311 234689999999876654443 3689999999
Q ss_pred cccccCcccHHHHHHHhcccCcEEEEeCCC
Q 003450 437 GHRLKNKDSKLFSSLKQYSTRHRVLLTGTP 466 (819)
Q Consensus 437 aH~~kn~~s~~~~~l~~l~~~~~llLTgTP 466 (819)
||++++. ...+.+..+.+.++|+||||+
T Consensus 178 aH~~~a~--~~~~i~~~~~~~~~lgLTATl 205 (206)
T d2fz4a1 178 VHHLPAE--SYVQIAQMSIAPFRLGLTATF 205 (206)
T ss_dssp SSCCCTT--THHHHHHTCCCSEEEEEEESC
T ss_pred CeeCCcH--HHHHHHhccCCCcEEEEecCC
Confidence 9999753 345566667888999999997
No 7
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.82 E-value=4.6e-20 Score=174.50 Aligned_cols=137 Identities=18% Similarity=0.254 Sum_probs=119.3
Q ss_pred hcCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEecc
Q 003450 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (819)
Q Consensus 605 ~~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st 684 (819)
..+.|+..|.++|..+ .+.|+||||++...++.|.+.|...|+++..++|+++..+|..+++.|+++... +|++|
T Consensus 10 ~~~~K~~~L~~ll~~~--~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~---iLv~T 84 (168)
T d1t5ia_ 10 KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVAT 84 (168)
T ss_dssp CGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEES
T ss_pred ChHHHHHHHHHHHHhC--CCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhccccce---eeecc
Confidence 3578999999999875 467999999999999999999999999999999999999999999999876544 79999
Q ss_pred ccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHHh
Q 003450 685 RAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKK 749 (819)
Q Consensus 685 ~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~~K 749 (819)
.++++|+|++.+++||+||+|+|+..++||+||++|.|++..+ +.|++.. -|..++..+.++
T Consensus 85 ~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~--i~l~~~~-~~~~~~~~i~~~ 146 (168)
T d1t5ia_ 85 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA--ITFVSDE-NDAKILNDVQDR 146 (168)
T ss_dssp SCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEE--EEEECSH-HHHHHHHHHHHH
T ss_pred ccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEE--EEEECch-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987644 5566543 355666555443
No 8
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.81 E-value=4.8e-20 Score=175.32 Aligned_cols=133 Identities=19% Similarity=0.276 Sum_probs=117.7
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
...|+..|.++|... .+.|+||||++..+++.|..+|...|+.+..++|+++..+|.+++..|+.+... +|++|+
T Consensus 16 ~~~K~~~L~~ll~~~--~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~~~~---ilv~Td 90 (171)
T d1s2ma2 16 ERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR---TLVCSD 90 (171)
T ss_dssp GGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSS---EEEESS
T ss_pred HHHHHHHHHHHHHhC--CCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccCccc---cccchh
Confidence 456999999999864 578999999999999999999999999999999999999999999999886654 899999
Q ss_pred cccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 003450 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 747 (819)
Q Consensus 686 a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~ 747 (819)
++++|||++.+++||+||+|||+..|+||+||++|.|+.. .++.|++++ |..++....
T Consensus 91 ~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g--~~i~~v~~~--e~~~~~~i~ 148 (171)
T d1s2ma2 91 LLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG--LAINLINWN--DRFNLYKIE 148 (171)
T ss_dssp CSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE--EEEEEECGG--GHHHHHHHH
T ss_pred HhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCcc--EEEEEeCHH--HHHHHHHHH
Confidence 9999999999999999999999999999999999999875 456677775 555554443
No 9
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.80 E-value=5.3e-20 Score=191.37 Aligned_cols=133 Identities=17% Similarity=0.321 Sum_probs=117.0
Q ss_pred cCchHHHHHHHHHHHH--hcCceEEEEecchhHHHHHHHHHhhCCCeEEEEecc--------CChHHHHHHHHHhcCCCC
Q 003450 606 SSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGK--------VGGAERQIRIDRFNAKNS 675 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~--~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~--------~~~~~R~~~i~~F~~~~~ 675 (819)
.++|+..|.++|..+. ..++++||||++..+++.+.+.|...|+++..++|. ++..+|+.+++.|+++..
T Consensus 141 ~~pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~ 220 (286)
T d1wp9a2 141 DHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEF 220 (286)
T ss_dssp SCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSC
T ss_pred CCcHHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCCC
Confidence 5789999999998765 347799999999999999999999999999999885 445589999999988654
Q ss_pred CcEEEEeccccccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHH
Q 003450 676 SRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQ 744 (819)
Q Consensus 676 ~~~v~L~st~a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~ 744 (819)
. +|++|+++++|||+++|++||+||++|||..++||+||++|. +++.+|.|++++|.||..+-
T Consensus 221 ~---vLv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~---~~~~~~~l~~~~~~ee~~~~ 283 (286)
T d1wp9a2 221 N---VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH---MPGRVIILMAKGTRDEAYYW 283 (286)
T ss_dssp S---EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSC---CCSEEEEEEETTSHHHHHHH
T ss_pred c---EEEEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCC---CCCEEEEEEeCCCHHHHHHh
Confidence 3 799999999999999999999999999999999999999884 46789999999999997764
No 10
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.79 E-value=1.6e-19 Score=168.84 Aligned_cols=133 Identities=20% Similarity=0.333 Sum_probs=115.1
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
...|+..|.++|.. .+.++||||++..+++.|.+.|...|+++..++|.++..+|..++++|+.+... +|++|+
T Consensus 13 ~~~K~~~L~~ll~~---~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~---ilv~T~ 86 (155)
T d1hv8a2 13 ENERFEALCRLLKN---KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR---ILIATD 86 (155)
T ss_dssp GGGHHHHHHHHHCS---TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS---EEEECT
T ss_pred hHHHHHHHHHHHcc---CCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhcccce---eeeehh
Confidence 45688888888764 466899999999999999999999999999999999999999999999886654 799999
Q ss_pred cccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 003450 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (819)
Q Consensus 686 a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~~~ 748 (819)
++++|||++.+++||+||+|||+..|+||.||++|.|+...+ +.|+.+. |+.+++..++
T Consensus 87 ~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~--i~~~~~~--d~~~~~~i~~ 145 (155)
T d1hv8a2 87 VMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKA--ISIINRR--EYKKLRYIER 145 (155)
T ss_dssp THHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEE--EEEECTT--SHHHHHHHHH
T ss_pred HHhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceE--EEEEchH--HHHHHHHHHH
Confidence 999999999999999999999999999999999999987644 4556654 5555554443
No 11
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.79 E-value=2.5e-19 Score=168.12 Aligned_cols=124 Identities=20% Similarity=0.290 Sum_probs=108.4
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
...|+..|.++++.+ .+.++||||++...++.|.+.|...|+++..++|+++..+|..+++.|+.+... +|++|+
T Consensus 11 ~e~K~~~L~~ll~~~--~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~---iLv~Td 85 (162)
T d1fuka_ 11 EEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTD 85 (162)
T ss_dssp GGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEG
T ss_pred cHHHHHHHHHHHHhC--CCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcccc---eeeccc
Confidence 456999999999875 467999999999999999999999999999999999999999999999886654 799999
Q ss_pred cccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCC
Q 003450 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (819)
Q Consensus 686 a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~ 736 (819)
++++|||++.+++||+||+|||+..|+||+||++|.|+... ++.+++.+
T Consensus 86 v~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~--~i~~~~~~ 134 (162)
T d1fuka_ 86 LLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV--AINFVTNE 134 (162)
T ss_dssp GGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CE--EEEEEETT
T ss_pred cccccccCCCceEEEEeccchhHHHHHhhccccccCCCccE--EEEEcCHH
Confidence 99999999999999999999999999999999999998654 45667765
No 12
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}
Probab=99.78 E-value=1.3e-19 Score=186.45 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=109.3
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCC--Ce
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ--MN 360 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~--~~ 360 (819)
.+||+||.+++..+. .+++++|.++||+|||+++.+++..+......++|||||. +|+.||.++|.++... ..
T Consensus 112 ~~~rdyQ~~av~~~l----~~~~~il~~pTGsGKT~i~~~i~~~~~~~~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~~~~ 187 (282)
T d1rifa_ 112 IEPHWYQKDAVFEGL----VNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (282)
T ss_dssp CCCCHHHHHHHHHHH----HHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGG
T ss_pred cccchHHHHHHHHHH----hcCCceeEEEcccCccHHHHHHHHHhhhcccceEEEEEcCchhHHHHHHHHHHhhcccccc
Confidence 689999999998873 4578999999999999999888877766666799999996 8999999999998632 22
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccccc
Q 003450 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL 440 (819)
Q Consensus 361 v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH~~ 440 (819)
+....+.... .........++++|++++......+. -+|++||+||||++
T Consensus 188 ~~~~~~g~~~-----------------------------~~~~~~~~~i~i~t~qs~~~~~~~~~-~~f~~VIvDEaH~~ 237 (282)
T d1rifa_ 188 IKKIGGGASK-----------------------------DDKYKNDAPVVVGTWQTVVKQPKEWF-SQFGMMMNDECHLA 237 (282)
T ss_dssp EEECSTTCSS-----------------------------TTCCCTTCSEEEECHHHHTTSCGGGG-GGEEEEEEETGGGC
T ss_pred ceeecceecc-----------------------------cccccccceEEEEeeehhhhhccccc-CCCCEEEEECCCCC
Confidence 2222222110 00112346799999999876543332 26899999999999
Q ss_pred cCcccHHHHHHHhc-ccCcEEEEeCCCCCCCh
Q 003450 441 KNKDSKLFSSLKQY-STRHRVLLTGTPLQNNL 471 (819)
Q Consensus 441 kn~~s~~~~~l~~l-~~~~~llLTgTP~~n~~ 471 (819)
++. .....+..+ .+.+|++|||||-....
T Consensus 238 ~a~--~~~~il~~~~~~~~rlGlTaT~~~~~~ 267 (282)
T d1rifa_ 238 TGK--SISSIISGLNNCMFKFGLSGSLRDGKA 267 (282)
T ss_dssp CHH--HHHHHTTTCTTCCEEEEECSSCCTTST
T ss_pred Cch--hHHHHHHhccCCCeEEEEEeecCCCCc
Confidence 642 233444445 57889999999955443
No 13
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=99.77 E-value=2.7e-19 Score=188.15 Aligned_cols=99 Identities=14% Similarity=0.155 Sum_probs=77.8
Q ss_pred HhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEE
Q 003450 621 KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (819)
Q Consensus 621 ~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI 700 (819)
...+.++|||+......+.+...|...|+.+..++|++....+ ..|.++. ..++++|.+.+.|+|+ .++.||
T Consensus 175 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~~----~~~~~~~---~~~lvaT~~~~~G~~~-~~~~Vi 246 (305)
T d2bmfa2 175 TDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEY----IKTRTND---WDFVVTTDISEMGANF-KAERVI 246 (305)
T ss_dssp HSSCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHHG----GGGGTSC---CSEEEECGGGGTTCCC-CCSEEE
T ss_pred HhhCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChHHHH----hhhhccc---hhhhhhhHHHHhcCCC-CccEEE
Confidence 3457899999999999999999999999999999998755433 3565443 3379999999999999 455554
Q ss_pred ----------EeCCC----------CCcchHHHHhHhhhhcCCCCcE
Q 003450 701 ----------IYDSD----------WNPHADLQAMARAHRLGQTNKV 727 (819)
Q Consensus 701 ----------~~d~~----------wnp~~~~Qa~gR~~R~Gq~~~V 727 (819)
++|++ -++..++|+.||++|.|+....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~~ 293 (305)
T d2bmfa2 247 DPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNEND 293 (305)
T ss_dssp ECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCCE
T ss_pred EcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCCceE
Confidence 34443 4677899999999999987643
No 14
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.77 E-value=9.7e-19 Score=165.01 Aligned_cols=130 Identities=18% Similarity=0.310 Sum_probs=115.6
Q ss_pred CchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEecccc
Q 003450 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (819)
Q Consensus 607 s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a 686 (819)
..|+..|.+++... .+.++||||+....++.+..+|...|+++..++|+++..+|..+++.|+++... +|++|++
T Consensus 19 ~~K~~~L~~ll~~~--~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g~~~---iLv~Td~ 93 (168)
T d2j0sa2 19 EWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR---VLISTDV 93 (168)
T ss_dssp THHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSC---EEEECGG
T ss_pred HHHHHHHHHHHHhC--CCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhcCCcc---EEeccch
Confidence 45999999999774 467999999999999999999999999999999999999999999999887655 7999999
Q ss_pred ccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHH
Q 003450 687 GGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 745 (819)
Q Consensus 687 ~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~ 745 (819)
+++|||++.+++||+||+||++..|+||+||++|.|+.. .++.|++++ |..++..
T Consensus 94 ~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G--~~i~~~~~~--d~~~~~~ 148 (168)
T d2j0sa2 94 WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG--VAINFVKND--DIRILRD 148 (168)
T ss_dssp GSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCE--EEEEEEEGG--GHHHHHH
T ss_pred hcccccccCcceEEEecCCcCHHHHHhhhccccccCCCc--EEEEEECHH--HHHHHHH
Confidence 999999999999999999999999999999999999865 456667665 5455443
No 15
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.75 E-value=6.1e-18 Score=165.89 Aligned_cols=166 Identities=17% Similarity=0.214 Sum_probs=115.9
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcC--CCe
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--QMN 360 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p--~~~ 360 (819)
.++|+||.++++++ .++++|++++||+|||++++.++........+++|||+|. +++.||.+++.+++. +..
T Consensus 8 ~~pr~~Q~~~~~~~-----~~~n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P~~~L~~q~~~~~~~~~~~~~~~ 82 (200)
T d1wp9a1 8 IQPRIYQEVIYAKC-----KETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (200)
T ss_dssp HCCCHHHHHHHHHG-----GGSCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CCCCHHHHHHHHHH-----hcCCeEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcCchHHHHHHHHHHHHhhcccccc
Confidence 46899999999876 2457999999999999988877666555455689999996 888999999999974 567
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--ccccCCccceEEEecccc
Q 003450 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGH 438 (819)
Q Consensus 361 v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~lIvDEaH 438 (819)
+..+++..........+ ...+++++|++.+... ...+...++++||+||||
T Consensus 83 v~~~~~~~~~~~~~~~~---------------------------~~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIiDE~H 135 (200)
T d1wp9a1 83 IVALTGEKSPEERSKAW---------------------------ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAH 135 (200)
T ss_dssp EEEECSCSCHHHHHHHH---------------------------HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGG
T ss_pred eeeeecccchhHHHHhh---------------------------hcccccccccchhHHHHhhhhhhccccceEEEEehh
Confidence 77777665544322221 2457999999988753 233344478899999999
Q ss_pred cccCcccHHHHH--H-HhcccCcEEEEeCCCCCCChhHHHhhhcccC
Q 003450 439 RLKNKDSKLFSS--L-KQYSTRHRVLLTGTPLQNNLDELFMLMHFLD 482 (819)
Q Consensus 439 ~~kn~~s~~~~~--l-~~l~~~~~llLTgTP~~n~~~el~~ll~~l~ 482 (819)
.+.+..+..... + ......+.++|||||- +...++..++..++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~SATp~-~~~~~~~~~~~~l~ 181 (200)
T d1wp9a1 136 RAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLG 181 (200)
T ss_dssp GCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTT
T ss_pred hhhcchhHHHHHHHHHhcCCCCcEEEEEecCC-CcHHHHHHHHhcCC
Confidence 997655433322 1 2223456899999993 33444444444333
No 16
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.73 E-value=9e-18 Score=158.42 Aligned_cols=124 Identities=19% Similarity=0.281 Sum_probs=104.7
Q ss_pred CchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEecccc
Q 003450 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (819)
Q Consensus 607 s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a 686 (819)
..|+..|.++|... ...++||||++....+.|...|...|+++..++|+++..+|.+++++|+++... +|++|++
T Consensus 17 ~~K~~~L~~ll~~~--~~~~~lIF~~~~~~~~~l~~~l~~~~~~~~~~hg~~~~~~R~~~~~~F~~g~~~---ilv~Td~ 91 (168)
T d2rb4a1 17 KDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK---VLITTNV 91 (168)
T ss_dssp HHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS---EEEECCS
T ss_pred HHHHHHHHHHHHhC--CCCcEEEEcCHHHHHHHHHHHHHhcCCcceecccchhhHHHHHHhhhhcCCcee---eeechhh
Confidence 45888888888653 467999999999999999999999999999999999999999999999876543 7999999
Q ss_pred ccccCCcccCCEEEEeCCCCCc------chHHHHhHhhhhcCCCCcEEEEEEEeCCC
Q 003450 687 GGLGINLATADTVIIYDSDWNP------HADLQAMARAHRLGQTNKVMIFRLITRGS 737 (819)
Q Consensus 687 ~~~GinL~~a~~VI~~d~~wnp------~~~~Qa~gR~~R~Gq~~~V~v~~li~~~T 737 (819)
+++|||++.+++||+||.||++ ..|+||+||++|.|+. ..+|.|++.+.
T Consensus 92 ~~~Gid~~~v~~Vi~yd~P~~~~~~~~~~~yihR~GR~gR~g~~--g~~i~~~~~~d 146 (168)
T d2rb4a1 92 CARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 146 (168)
T ss_dssp CCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred hhhhhccccccEEEeecCCCcccccCCHHHHHHHhhhcccCCCc--eEEEEEEcHHH
Confidence 9999999999999999999964 5799999999999964 45677888773
No 17
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=99.70 E-value=3.7e-17 Score=158.32 Aligned_cols=118 Identities=20% Similarity=0.218 Sum_probs=106.8
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
...|+..|.++|... .+.++|||++.....+.|...|...|+.+..++|+++..+|.++++.|.++... +|++|.
T Consensus 14 ~~~k~~~L~~~l~~~--~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---ilvaTd 88 (200)
T d1oywa3 14 KFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ---IVVATV 88 (200)
T ss_dssp CSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEECT
T ss_pred CCcHHHHHHHHHHhc--CCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcccce---EEEecc
Confidence 456888888887663 477999999999999999999999999999999999999999999999886654 899999
Q ss_pred cccccCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEE
Q 003450 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (819)
Q Consensus 686 a~~~GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 728 (819)
++|+|||++.+++||+||+|+|+..|+|++||++|.|+...+.
T Consensus 89 ~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai 131 (200)
T d1oywa3 89 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM 131 (200)
T ss_dssp TSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEE
T ss_pred hhhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEE
Confidence 9999999999999999999999999999999999999765443
No 18
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=99.66 E-value=3.2e-16 Score=145.76 Aligned_cols=106 Identities=18% Similarity=0.215 Sum_probs=94.9
Q ss_pred HHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCccc
Q 003450 616 MMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLAT 695 (819)
Q Consensus 616 ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~ 695 (819)
.+.+....|+++||||....+.+.|.++|...|++...++|+++..+|++++++|.++... +|++|.++++|||+++
T Consensus 23 ~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~---vLVaT~v~~~GiDip~ 99 (174)
T d1c4oa2 23 GIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD---CLVGINLLREGLDIPE 99 (174)
T ss_dssp HHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS---EEEESCCCCTTCCCTT
T ss_pred HHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeE---EEEeeeeeeeeccCCC
Confidence 3344446799999999999999999999999999999999999999999999999886655 8999999999999999
Q ss_pred CCEEEEeCCCC-----CcchHHHHhHhhhhcCCC
Q 003450 696 ADTVIIYDSDW-----NPHADLQAMARAHRLGQT 724 (819)
Q Consensus 696 a~~VI~~d~~w-----np~~~~Qa~gR~~R~Gq~ 724 (819)
+++||+||++- ++..|+|++||++|-|..
T Consensus 100 V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~g 133 (174)
T d1c4oa2 100 VSLVAILDADKEGFLRSERSLIQTIGRAARNARG 133 (174)
T ss_dssp EEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTC
T ss_pred CcEEEEeccccccccchhHHHHHHhhhhhhcCCC
Confidence 99999999875 446699999999997763
No 19
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=99.65 E-value=6.8e-16 Score=146.15 Aligned_cols=109 Identities=20% Similarity=0.223 Sum_probs=96.6
Q ss_pred HHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCC
Q 003450 613 LDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGIN 692 (819)
Q Consensus 613 l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~Gin 692 (819)
|...+....+.++++||||+.....+.+...|...|+++..++|++++.+|.+++++|+++... +|++|.++++|||
T Consensus 20 ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~---vLVaTdv~~rGiD 96 (181)
T d1t5la2 20 LIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYD---VLVGINLLREGLD 96 (181)
T ss_dssp HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCS---EEEESCCCSSSCC
T ss_pred HHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCC---EEEehhHHHccCC
Confidence 3333444445688999999999999999999999999999999999999999999999887655 8999999999999
Q ss_pred cccCCEEEEeCCCC-----CcchHHHHhHhhhhcCCC
Q 003450 693 LATADTVIIYDSDW-----NPHADLQAMARAHRLGQT 724 (819)
Q Consensus 693 L~~a~~VI~~d~~w-----np~~~~Qa~gR~~R~Gq~ 724 (819)
++.+++||+||+|- ++..++||.||++|.|+.
T Consensus 97 ip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~~ 133 (181)
T d1t5la2 97 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANG 133 (181)
T ss_dssp CTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTC
T ss_pred CCCCCEEEEecCCcccccccHHHHHHHHHhhccccCc
Confidence 99999999999984 677888999999998864
No 20
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.57 E-value=6.5e-15 Score=144.00 Aligned_cols=161 Identities=21% Similarity=0.259 Sum_probs=106.9
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCC-CeEE
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ-MNVV 362 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~-~~v~ 362 (819)
+|+|||.+++..+ .+++++|++++||+|||.+++..+...... .+++|+|+|. +++.||.+++.++.+. ..+.
T Consensus 25 ~l~~~Q~~ai~~l----~~~~~~il~apTGsGKT~~a~l~i~~~~~~-~~~vl~l~P~~~L~~q~~~~~~~~~~~~~~v~ 99 (202)
T d2p6ra3 25 ELFPPQAEAVEKV----FSGKNLLLAMPTAAGKTLLAEMAMVREAIK-GGKSLYVVPLRALAGEKYESFKKWEKIGLRIG 99 (202)
T ss_dssp CCCCCCHHHHHHH----TTCSCEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEE
T ss_pred CCCHHHHHHHHHH----HcCCCEEEEcCCCCchhHHHHHHHHHHhhc-cCcceeecccHHHHHHHHHHHHHHhhccccce
Confidence 5999999999877 578899999999999998875444433222 3489999996 7889999999998863 4555
Q ss_pred EEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhccccc--CCccceEEEecccccc
Q 003450 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASL--KPIKWQCMIVDEGHRL 440 (819)
Q Consensus 363 ~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l--~~~~~~~lIvDEaH~~ 440 (819)
.+.|....+ ......++++++|+..+....... ....+++||+||+|++
T Consensus 100 ~~~~~~~~~-----------------------------~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~DE~h~~ 150 (202)
T d2p6ra3 100 ISTGDYESR-----------------------------DEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLL 150 (202)
T ss_dssp EECSSCBCC-----------------------------SSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGG
T ss_pred eeccCcccc-----------------------------cccccccceeeeccHHHHHHHhccchhhhhhhhccccHHHHh
Confidence 555543221 112246789999998876432211 1225789999999999
Q ss_pred cCcc--cHHHHH---HHhcc-cCcEEEEeCCCCCCChhHHHhhhcccCCC
Q 003450 441 KNKD--SKLFSS---LKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAG 484 (819)
Q Consensus 441 kn~~--s~~~~~---l~~l~-~~~~llLTgTP~~n~~~el~~ll~~l~~~ 484 (819)
.+.. ...... +.... ..++|+||||- .++.++. +||+..
T Consensus 151 ~~~~r~~~~~~~l~~i~~~~~~~~~l~lSATl--~n~~~~~---~~l~~~ 195 (202)
T d2p6ra3 151 DSEKRGATLEILVTKMRRMNKALRVIGLSATA--PNVTEIA---EWLDAD 195 (202)
T ss_dssp GCTTTHHHHHHHHHHHHHHCTTCEEEEEECCC--TTHHHHH---HHTTCE
T ss_pred cccccchHHHHHHHHHHhcCCCCcEEEEcCCC--CcHHHHH---HHcCCC
Confidence 7643 222222 33333 34678999993 2455543 444443
No 21
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.52 E-value=4.1e-14 Score=141.93 Aligned_cols=161 Identities=16% Similarity=0.176 Sum_probs=106.2
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCe--
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMN-- 360 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~-- 360 (819)
++++++|.+++..+ ..|+++++..+||+|||.+++..+..+...+ +++|||+|+ .++.||.+++.+++..+.
T Consensus 42 ~~p~~~Q~~~i~~~----l~g~~~~i~apTGsGKT~~~~~~~~~~~~~~-~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~ 116 (237)
T d1gkub1 42 GEPRAIQKMWAKRI----LRKESFAATAPTGVGKTSFGLAMSLFLALKG-KRCYVIFPTSLLVIQAAETIRKYAEKAGVG 116 (237)
T ss_dssp CSCCHHHHHHHHHH----HTTCCEECCCCBTSCSHHHHHHHHHHHHTTS-CCEEEEESCHHHHHHHHHHHHHHHTTTCCS
T ss_pred CCCCHHHHHHHHHH----HCCCCEEEEecCCChHHHHHHHHHHHHHHhc-CeEEEEeccHHHHHHHHHHHHHHHHHcCCc
Confidence 46899999998766 5789999999999999988776665554443 589999996 788999999999864332
Q ss_pred ----EEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecc
Q 003450 361 ----VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDE 436 (819)
Q Consensus 361 ----v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDE 436 (819)
+..+.+........... .....++|+|+|++.+......+. +|++|||||
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~l------------------------~~~~~~~Ilv~Tp~~l~~~~~~~~--~~~~vVvDE 170 (237)
T d1gkub1 117 TENLIGYYHGRIPKREKENFM------------------------QNLRNFKIVITTTQFLSKHYRELG--HFDFIFVDD 170 (237)
T ss_dssp GGGSEEECCSSCCSHHHHHHH------------------------HSGGGCSEEEEEHHHHHHCSTTSC--CCSEEEESC
T ss_pred eEEEEeeeecccchhhhhhhh------------------------ccccccceeccChHHHHHhhhhcC--CCCEEEEEC
Confidence 22233332222111110 112467899999999877655443 578999999
Q ss_pred cccccCcccHHHHHHHhc-------------c-cCcEEEEeCCCCCCChhHHH
Q 003450 437 GHRLKNKDSKLFSSLKQY-------------S-TRHRVLLTGTPLQNNLDELF 475 (819)
Q Consensus 437 aH~~kn~~s~~~~~l~~l-------------~-~~~~llLTgTP~~n~~~el~ 475 (819)
+|.+-.........+..+ . ....+++|||+-......++
T Consensus 171 ~d~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~l~ 223 (237)
T d1gkub1 171 VDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELF 223 (237)
T ss_dssp HHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHH
T ss_pred hhhhhhcccchhHHHHhcCChHHHHHHHhhCCCCCeEEEEeCCCCcccHHHHH
Confidence 999754333222222221 1 12357889997544444444
No 22
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.45 E-value=1e-13 Score=138.24 Aligned_cols=159 Identities=16% Similarity=0.191 Sum_probs=113.7
Q ss_pred CCCchhHHHHHHHHHHhhcCCC--ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcC--C
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--Q 358 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~--~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p--~ 358 (819)
.+|.+-|..+++-+..-+..+. +.+|.+++|+|||++++.++......+ ..+++++|+ .|..|+.+.|.++++ +
T Consensus 82 FeLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g-~q~~~m~Pt~~La~Qh~~~~~~~f~~~~ 160 (264)
T d1gm5a3 82 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-FQTAFMVPTSILAIQHYRRTVESFSKFN 160 (264)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-SCEEEECSCHHHHHHHHHHHHHHHTCSS
T ss_pred ccCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhcc-cceeEEeehHhhhHHHHHHHHHhhhhcc
Confidence 5799999999998877665544 789999999999999988887766554 489999997 666899999999997 4
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH 438 (819)
.++.+++|+.........+. ....++.+|+|.|+..+..+..+ . +.++|||||-|
T Consensus 161 ~~v~~l~~~~~~~~r~~~~~----------------------~~~~g~~~iiIGThsl~~~~~~f-~--~LglviiDEqH 215 (264)
T d1gm5a3 161 IHVALLIGATTPSEKEKIKS----------------------GLRNGQIDVVIGTHALIQEDVHF-K--NLGLVIIDEQH 215 (264)
T ss_dssp CCEEECCSSSCHHHHHHHHH----------------------HHHSSCCCEEEECTTHHHHCCCC-S--CCCEEEEESCC
T ss_pred ccceeeccccchHHHHHHHH----------------------HHHCCCCCEEEeehHHhcCCCCc-c--ccceeeecccc
Confidence 67888888665443222211 11235789999999998755442 2 35799999999
Q ss_pred cccCcccHHHHHHHh-cccCcEEEEeCCCCCCCh
Q 003450 439 RLKNKDSKLFSSLKQ-YSTRHRVLLTGTPLQNNL 471 (819)
Q Consensus 439 ~~kn~~s~~~~~l~~-l~~~~~llLTgTP~~n~~ 471 (819)
++.-. ....+.. -...+.|++||||+..++
T Consensus 216 ~fgv~---Qr~~l~~~~~~~~~l~~SATPiprtl 246 (264)
T d1gm5a3 216 RFGVK---QREALMNKGKMVDTLVMSATPIPRSM 246 (264)
T ss_dssp CC--------CCCCSSSSCCCEEEEESSCCCHHH
T ss_pred ccchh---hHHHHHHhCcCCCEEEEECCCCHHHH
Confidence 98321 1111111 124578999999987764
No 23
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=99.45 E-value=3.2e-14 Score=129.91 Aligned_cols=131 Identities=18% Similarity=0.218 Sum_probs=79.7
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchH-HHHHHHHHHcCCCeEEEEecChhHHHHHHHhhh
Q 003450 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR-NWEREFATWAPQMNVVMYVGTSQARNIIREYEF 379 (819)
Q Consensus 301 ~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~-qW~~e~~~~~p~~~v~~~~g~~~~r~~~~~~e~ 379 (819)
+.+++++||.++||+|||.+++..+..........++|++|...+. ||.+.+ +...+.........
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~p~~~l~~q~~~~~----~~~~~~~~~~~~~~--------- 70 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAF----HGLDVKFHTQAFSA--------- 70 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHT----TTSCEEEESSCCCC---------
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeeecchhHHHHHHHHh----hhhhhhhccccccc---------
Confidence 4678999999999999999987665554444456899999985554 444333 23333222211100
Q ss_pred cCCCCccccccccCCccccccccccccccEEEchhhHHh-hcccccCCccceEEEecccccccCcccH---HHHHHHhcc
Q 003450 380 YFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMIN-LDSASLKPIKWQCMIVDEGHRLKNKDSK---LFSSLKQYS 455 (819)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~-~~~~~l~~~~~~~lIvDEaH~~kn~~s~---~~~~l~~l~ 455 (819)
.......+...++..+. .........+|++||+||||++...... ....+....
T Consensus 71 ----------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~~~~ 128 (140)
T d1yksa1 71 ----------------------HGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARAN 128 (140)
T ss_dssp ----------------------CCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTT
T ss_pred ----------------------ccccccchhhhhHHHHHHHHhccccccceeEEEEccccccChhhHHHHHHHHHHhhCC
Confidence 01122335555555554 3344455568999999999998432221 122233345
Q ss_pred cCcEEEEeCCC
Q 003450 456 TRHRVLLTGTP 466 (819)
Q Consensus 456 ~~~~llLTgTP 466 (819)
..+.++|||||
T Consensus 129 ~~~~l~lTATP 139 (140)
T d1yksa1 129 ESATILMTATP 139 (140)
T ss_dssp SCEEEEECSSC
T ss_pred CCCEEEEEcCC
Confidence 67889999999
No 24
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.45 E-value=1.1e-13 Score=125.69 Aligned_cols=124 Identities=19% Similarity=0.104 Sum_probs=81.3
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhcC
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYF 381 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~~~~g~~~~r~~~~~~e~~~ 381 (819)
..+.+||.++||+|||.+++.++. ....++||++|. .+..||.+.+..++.........|..
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~~~~----~~~~~vli~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~------------- 69 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPAAYA----AQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRT------------- 69 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHH----TTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-------------
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH----HcCCcEEEEcChHHHHHHHHHHHHHHhhccccccccccc-------------
Confidence 456789999999999987655443 233589999996 67789999999887443332222211
Q ss_pred CCCccccccccCCccccccccccccccEEEchhhHHhhcc-cccCCccceEEEecccccccCcccH-HHHHHHhcc---c
Q 003450 382 PKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS-ASLKPIKWQCMIVDEGHRLKNKDSK-LFSSLKQYS---T 456 (819)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~-~~l~~~~~~~lIvDEaH~~kn~~s~-~~~~l~~l~---~ 456 (819)
......+++++++...... ..+ -+|++||+||+|++...... ....+..++ .
T Consensus 70 ---------------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vIiDE~H~~~~~~~~~~~~~l~~~~~~~~ 126 (136)
T d1a1va1 70 ---------------------ITTGSPITYSTYGKFLADGGCSG--GAYDIIICDECHSTDATSILGIGTVLDQAETAGA 126 (136)
T ss_dssp ---------------------ECCCCSEEEEEHHHHHHTTGGGG--CCCSEEEEETTTCCSHHHHHHHHHHHHHTTTTTC
T ss_pred ---------------------cccccceEEEeeeeeccccchhh--hcCCEEEEecccccCHHHHHHHHHHHHHHHHCCC
Confidence 1123457777777765433 333 26899999999998554332 333344333 2
Q ss_pred CcEEEEeCCC
Q 003450 457 RHRVLLTGTP 466 (819)
Q Consensus 457 ~~~llLTgTP 466 (819)
...++|||||
T Consensus 127 ~~~l~~TATP 136 (136)
T d1a1va1 127 RLVVLATATP 136 (136)
T ss_dssp SEEEEEESSC
T ss_pred CcEEEEeCCC
Confidence 3579999999
No 25
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=99.44 E-value=1.5e-13 Score=134.64 Aligned_cols=167 Identities=17% Similarity=0.113 Sum_probs=107.9
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEEE
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVM 363 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~~ 363 (819)
+|||||.+++..+ ..++++++..+||+|||..+...+.. ..++.++++|. .+..|+.+++..+........
T Consensus 25 ~~rp~Q~~ai~~~----l~g~~vlv~apTGsGKT~~~~~~~~~----~~~~~~~v~P~~~L~~q~~~~l~~~~~~~~~~~ 96 (206)
T d1oywa2 25 QFRPGQEEIIDTV----LSGRDCLVVMPTGGGKSLCYQIPALL----LNGLTVVVSPLISLMKDQVDQLQANGVAAACLN 96 (206)
T ss_dssp SCCTTHHHHHHHH----HTTCCEEEECSCHHHHHHHHHHHHHH----SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCHHHHHHHHHH----HcCCCEEEEcCCCCCCcchhhhhhhh----ccCceEEeccchhhhhhHHHHHHhhcccccccc
Confidence 6899999999876 56789999999999999876544432 34589999996 777899999988763322222
Q ss_pred EecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--ccccCCccceEEEeccccccc
Q 003450 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRLK 441 (819)
Q Consensus 364 ~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~lIvDEaH~~k 441 (819)
..+........... ......+++++|+..+... .......++.++|+||||.+.
T Consensus 97 ~~~~~~~~~~~~~~------------------------~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~lviDEaH~~~ 152 (206)
T d1oywa2 97 STQTREQQLEVMTG------------------------CRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCIS 152 (206)
T ss_dssp TTSCHHHHHHHHHH------------------------HHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGC
T ss_pred cccccccchhHHHH------------------------HhcCCceEEEEechhhhchhhcccchhheeeeeeeeeeeeee
Confidence 22222222211110 1124577899998877543 223344468899999999886
Q ss_pred Cccc-------HHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhcccCC
Q 003450 442 NKDS-------KLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (819)
Q Consensus 442 n~~s-------~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l~~ 483 (819)
.... ........+....+++||||+-..-.+|+...|.+-+|
T Consensus 153 ~~~~~~~~~~~~~~~l~~~~~~~~ii~lSATl~~~v~~di~~~L~l~~p 201 (206)
T d1oywa2 153 QWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDP 201 (206)
T ss_dssp TTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSC
T ss_pred ccccchHHHHHHHHHHHHhCCCCceEEEEeCCCHHHHHHHHHHcCCCCC
Confidence 5332 11222233445568999999632223467777666555
No 26
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=99.42 E-value=1.4e-12 Score=127.40 Aligned_cols=158 Identities=17% Similarity=0.208 Sum_probs=114.9
Q ss_pred CCCchhHHHHHHHHHHhhcCCC--ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCC--
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ-- 358 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~--~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~-- 358 (819)
..|.+-|..+++-+......+. ..+|.+++|+|||.+++.++......+ +.+++++|. .|..|+.+.|.+++++
T Consensus 54 ~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g-~qv~~l~Pt~~La~Q~~~~~~~~~~~~~ 132 (233)
T d2eyqa3 54 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH-KQVAVLVPTTLLAQQHYDNFRDRFANWP 132 (233)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT-CEEEEECSSHHHHHHHHHHHHHHSTTTT
T ss_pred cccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHcC-CceEEEccHHHhHHHHHHHHHHHHhhCC
Confidence 5688999999998877766655 689999999999999988888776544 589999997 6668999999998875
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcccccCCccceEEEecccc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~lIvDEaH 438 (819)
.++..++|..........+. ....+..+|+|.|+..+..... -.+..+|||||-|
T Consensus 133 ~~v~~l~~~~~~~~~~~~~~----------------------~~~~g~~~iviGths~l~~~~~---f~~LgLiIiDEeH 187 (233)
T d2eyqa3 133 VRIEMISRFRSAKEQTQILA----------------------EVAEGKIDILIGTHKLLQSDVK---FKDLGLLIVDEEH 187 (233)
T ss_dssp CCEEEESTTSCHHHHHHHHH----------------------HHHTTCCSEEEECTHHHHSCCC---CSSEEEEEEESGG
T ss_pred CEEEeccCcccchhHHHHHH----------------------HHhCCCCCEEEeehhhhccCCc---cccccceeeechh
Confidence 56777888655433222211 1123567899999998864332 2357899999999
Q ss_pred cccCcccHHHHHHHhc-ccCcEEEEeCCCCCCC
Q 003450 439 RLKNKDSKLFSSLKQY-STRHRVLLTGTPLQNN 470 (819)
Q Consensus 439 ~~kn~~s~~~~~l~~l-~~~~~llLTgTP~~n~ 470 (819)
++ +-+....+... ...+.+++||||+...
T Consensus 188 ~f---g~kQ~~~l~~~~~~~~~l~~SATPiprt 217 (233)
T d2eyqa3 188 RF---GVRHKERIKAMRANVDILTLTATPIPRT 217 (233)
T ss_dssp GS---CHHHHHHHHHHHTTSEEEEEESSCCCHH
T ss_pred hh---hhHHHHHHHhhCCCCCEEEEecchhHHH
Confidence 97 33333333333 3458999999998654
No 27
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.35 E-value=3.9e-12 Score=124.15 Aligned_cols=152 Identities=14% Similarity=0.169 Sum_probs=107.2
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCC-ceEEEecC-cchHHHHHHHHHHcC--CCe
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-STLRNWEREFATWAP--QMN 360 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~-~~LIv~P~-~ll~qW~~e~~~~~p--~~~ 360 (819)
++.|.|..++..+. ..+.+.|+..++|+|||+.++..+........+ .+||+||+ .++.|+.+.+..+.. +.+
T Consensus 26 ~pt~iQ~~~ip~~l---~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~~~~~~~lil~pt~~l~~q~~~~~~~~~~~~~~~ 102 (208)
T d1hv8a1 26 KPTDIQMKVIPLFL---NDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLK 102 (208)
T ss_dssp SCCHHHHHHHHHHH---HTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCHHHHHHHHHHH---cCCCCeeeechhcccccceeecccccccccccCcceEEEeeccccchhhhhhhhhhcccCCeE
Confidence 57889999987652 233588899999999999887777665554444 78999997 677788888877763 577
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--ccccCCccceEEEecccc
Q 003450 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGH 438 (819)
Q Consensus 361 v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~lIvDEaH 438 (819)
+..++|........+.. ...+|+|+|++.+... ...+..-+..++|+||||
T Consensus 103 v~~~~g~~~~~~~~~~l---------------------------~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad 155 (208)
T d1hv8a1 103 IAKIYGGKAIYPQIKAL---------------------------KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 155 (208)
T ss_dssp EEEECTTSCHHHHHHHH---------------------------HTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EEEeeCCCChHHHHHhc---------------------------CCCCEEEEChHHHHHHHHcCCCCcccCcEEEEEChH
Confidence 88888876655433321 2468999999887542 223333456799999999
Q ss_pred cccCc--ccHHHHHHHhccc-CcEEEEeCCC
Q 003450 439 RLKNK--DSKLFSSLKQYST-RHRVLLTGTP 466 (819)
Q Consensus 439 ~~kn~--~s~~~~~l~~l~~-~~~llLTgTP 466 (819)
++-+. ...+.+.+..++. ...+++|||.
T Consensus 156 ~l~~~~~~~~i~~I~~~~~~~~Q~i~~SAT~ 186 (208)
T d1hv8a1 156 EMLNMGFIKDVEKILNACNKDKRILLFSATM 186 (208)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSC
T ss_pred HhhcCCChHHHHHHHHhCCCCCeEEEEEccC
Confidence 98543 3345555555644 4568889994
No 28
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.32 E-value=5.6e-13 Score=119.81 Aligned_cols=99 Identities=20% Similarity=0.213 Sum_probs=84.6
Q ss_pred cCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEEe
Q 003450 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIY 702 (819)
Q Consensus 623 ~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~~ 702 (819)
++.++||||+.....+.|.+.|...|++...++|+++.++ |++ +...+|++|+++++||| +.++.||++
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~~-------~~~---~~~~vlvaTd~~~~GiD-~~v~~Vi~~ 102 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSV-------IPT---NGDVVVVATDALMTGFT-GDFDSVIDC 102 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSCC-------CTT---SSCEEEEESSSSCSSSC-CCBSEEEEC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchhhh-------hhh---hhcceeehhHHHHhccc-cccceEEEE
Confidence 4679999999999999999999999999999999988553 543 33458999999999999 899999986
Q ss_pred C----CCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCC
Q 003450 703 D----SDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (819)
Q Consensus 703 d----~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~ 736 (819)
| +|.++..|+|++||++| |+.. +|.|++++
T Consensus 103 ~~~~~~P~~~~~y~qr~GR~gR-g~~G---~~~~i~~~ 136 (138)
T d1jr6a_ 103 NTSDGKPQDAVSRTQRRGRTGR-GKPG---IYRFVAPG 136 (138)
T ss_dssp SEETTEECCHHHHHHHHTTBCS-SSCE---EEEECCSS
T ss_pred EecCCCCCCHHHHHhHhccccC-CCCc---EEEEEcCC
Confidence 5 68899999999999999 8665 36777664
No 29
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.31 E-value=7.4e-12 Score=122.81 Aligned_cols=168 Identities=16% Similarity=0.201 Sum_probs=116.1
Q ss_pred cccccccCCCCCCC-----C-CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC-CCC-ceEEEe
Q 003450 269 KEFQQYEHSPEFLS-----G-GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RIS-PHLVVA 340 (819)
Q Consensus 269 ~~~~~~~~~p~~~~-----~-~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~-~~~-~~LIv~ 340 (819)
..|..+.-.|..+. | ..+.|.|..++..+ ..|+++++..+||+|||+..+..+...... ... ..||++
T Consensus 17 ~sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~i----l~g~dvi~~a~TGSGKTlayllPil~~l~~~~~~~~~lil~ 92 (222)
T d2j0sa1 17 PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQI----IKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 92 (222)
T ss_dssp CSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEEC
T ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH----HCCCCeEEEcCcchhhhhhhcccccccccccccCceeEEec
Confidence 35666554444322 1 36999999999887 568999999999999999876655554433 223 689999
Q ss_pred cC-cchHHHHHHHHHHc--CCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHH
Q 003450 341 PL-STLRNWEREFATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMI 417 (819)
Q Consensus 341 P~-~ll~qW~~e~~~~~--p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l 417 (819)
|+ .+..|-.+++.++. .++++..+.|........... ....+|+|+|++.+
T Consensus 93 PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l--------------------------~~~~~Ilv~TPgrl 146 (222)
T d2j0sa1 93 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL--------------------------DYGQHVVAGTPGRV 146 (222)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHH--------------------------HHCCSEEEECHHHH
T ss_pred chHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHh--------------------------ccCCeEEeCCCCcH
Confidence 97 66667777787776 467888888877655544332 13578999999998
Q ss_pred hhc--ccccCCccceEEEecccccccCcc--cHHHHHHHhccc-CcEEEEeCCC
Q 003450 418 NLD--SASLKPIKWQCMIVDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTP 466 (819)
Q Consensus 418 ~~~--~~~l~~~~~~~lIvDEaH~~kn~~--s~~~~~l~~l~~-~~~llLTgTP 466 (819)
... ...+......++|+||||++-+.+ ..+...+..++. ...+++|||-
T Consensus 147 ~~~~~~~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~l~~~~Q~ilfSAT~ 200 (222)
T d2j0sa1 147 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 200 (222)
T ss_dssp HHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCC
T ss_pred HhcccccccccccceeeeecchhHhhhcCcHHHHHHHHHhCCCCCEEEEEEEeC
Confidence 642 222333356789999999996643 345555555544 4568889994
No 30
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.29 E-value=3.1e-11 Score=117.37 Aligned_cols=162 Identities=13% Similarity=0.137 Sum_probs=109.3
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-C-CceEEEecC-cchHHHHHHHHHHc---CC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-I-SPHLVVAPL-STLRNWEREFATWA---PQ 358 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~-~-~~~LIv~P~-~ll~qW~~e~~~~~---p~ 358 (819)
.+.|.|..++..+ ..|+++++.++||+|||+..+..+....... . ...+|++|+ .+..|..+.+..+. +.
T Consensus 23 ~pt~iQ~~aip~i----l~g~dvl~~A~TGsGKTla~~lp~l~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~ 98 (207)
T d1t6na_ 23 HPSEVQHECIPQA----ILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 98 (207)
T ss_dssp CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHH----HcCCCeEEEeccccccccccccceeeeecccCCCceEEEEeccchhhHHHHHHHHHHHhhCCC
Confidence 5899999999877 5789999999999999998766555543332 2 278999997 66677777777666 44
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccceEEEecc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDE 436 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~lIvDE 436 (819)
..+....|........... ....++|+|+|++.+.... ..+.--+..++|+||
T Consensus 99 ~~~~~~~g~~~~~~~~~~l-------------------------~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDE 153 (207)
T d1t6na_ 99 VKVAVFFGGLSIKKDEEVL-------------------------KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 153 (207)
T ss_dssp CCEEEESCCSCHHHHHHHH-------------------------HHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred ceeEEEeccccHHHHHHHH-------------------------HhcCCCEEEeCcchhhhhccCCceeccccceeehhh
Confidence 5677777776555433332 1136799999999886532 222333456899999
Q ss_pred cccccCc---ccHHHHHHHhcccC-cEEEEeCCCCCCChhHHHh
Q 003450 437 GHRLKNK---DSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFM 476 (819)
Q Consensus 437 aH~~kn~---~s~~~~~l~~l~~~-~~llLTgTP~~n~~~el~~ 476 (819)
||++-.. ...+...+..++.+ ..+++||| +..++.++..
T Consensus 154 aD~ll~~~~~~~~i~~I~~~~~~~~Q~il~SAT-~~~~v~~l~~ 196 (207)
T d1t6na_ 154 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT-LSKEIRPVCR 196 (207)
T ss_dssp HHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESC-CCTTTHHHHH
T ss_pred hhhhhhcCCcHHHHHHHHHhCCCCCEEEEEeee-CCHHHHHHHH
Confidence 9998642 12233334444443 46788999 4555555543
No 31
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.29 E-value=1.4e-12 Score=101.81 Aligned_cols=51 Identities=27% Similarity=0.873 Sum_probs=47.0
Q ss_pred cccccccccccCCCCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 48 DAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 48 ~~~~~~C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
++...+|.+|+++|+||.||.|+++||+.|+.||+..+|.++|+|+.|...
T Consensus 4 Dd~c~~C~~C~~~~~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 54 (70)
T d1fp0a1 4 DDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 54 (70)
T ss_dssp SSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCCCCCCCCcCEEEECCCCChhhccccCCCCcCcCCCCCEECcCCcCc
Confidence 446778999999999999999999999999999999999999999999753
No 32
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Probab=99.28 E-value=4.6e-11 Score=118.74 Aligned_cols=177 Identities=14% Similarity=0.242 Sum_probs=119.9
Q ss_pred CcccccccCCCCCCCC------CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH-HHHhcCC--------
Q 003450 268 PKEFQQYEHSPEFLSG------GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGER-------- 332 (819)
Q Consensus 268 ~~~~~~~~~~p~~~~~------~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l-~~l~~~~-------- 332 (819)
...|..+.-.|....+ ..+.|.|..++..+ ..|+++++.+++|+|||+..+..+ ..+....
T Consensus 20 ~~~F~~l~l~~~l~~~L~~~g~~~pt~iQ~~~ip~i----l~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~ 95 (238)
T d1wrba1 20 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAI----LEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSK 95 (238)
T ss_dssp CCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------C
T ss_pred cCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHhhhh----hCCCCEEEECCCCCCcceeeHHHHHHHHHhcccccccccC
Confidence 3566666655554432 36999999999877 578999999999999999865544 4443221
Q ss_pred --CCceEEEecC-cchHHHHHHHHHHcC--CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccc
Q 003450 333 --ISPHLVVAPL-STLRNWEREFATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKF 407 (819)
Q Consensus 333 --~~~~LIv~P~-~ll~qW~~e~~~~~p--~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (819)
...+||++|+ .++.|..+++..+.. ++++....|........+.. ....
T Consensus 96 ~~~~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------------------------~~~~ 149 (238)
T d1wrba1 96 TAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV--------------------------QMGC 149 (238)
T ss_dssp CBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH--------------------------SSCC
T ss_pred CCCceEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhc--------------------------ccCC
Confidence 1268999997 777888888888764 46777777766554433321 2467
Q ss_pred cEEEchhhHHhhc--ccccCCccceEEEecccccccCc--ccHHHHHHHhcc-----cCcEEEEeCCCCCCChhHHH
Q 003450 408 DVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRLKNK--DSKLFSSLKQYS-----TRHRVLLTGTPLQNNLDELF 475 (819)
Q Consensus 408 ~vvi~ty~~l~~~--~~~l~~~~~~~lIvDEaH~~kn~--~s~~~~~l~~l~-----~~~~llLTgTP~~n~~~el~ 475 (819)
+|+|+|++.+... ...+.-....++|+||||++-.. ...+...+..+. ....+++||| +..++.++.
T Consensus 150 ~ivV~TP~~l~~~~~~~~~~l~~v~~lViDEaD~ll~~~f~~~i~~Il~~~~~~~~~~~Q~il~SAT-~~~~v~~l~ 225 (238)
T d1wrba1 150 HLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSAT-FPKEIQKLA 225 (238)
T ss_dssp SEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESS-CCHHHHHHH
T ss_pred ceeecCHHHHHhHHccCceeccccceeeeehhhhhhhhccHHHHHHHHHHhcCCCCCCCEEEEEeee-CCHHHHHHH
Confidence 9999999998753 22333346779999999998533 344555555543 2356899999 444444443
No 33
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.27 E-value=1.7e-11 Score=119.17 Aligned_cols=152 Identities=15% Similarity=0.125 Sum_probs=104.7
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc-CCCC-ceEEEecC-cchHHHHHHHHHHc---CC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ERIS-PHLVVAPL-STLRNWEREFATWA---PQ 358 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~-~~~~-~~LIv~P~-~ll~qW~~e~~~~~---p~ 358 (819)
.+.|.|..++..+ ..|+++++..+||+|||+..+..+..... ...+ ..||++|+ .+..|-.+++..+. ..
T Consensus 25 ~pt~iQ~~aip~i----l~g~dvl~~a~TGsGKTlayllP~l~~~~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~ 100 (206)
T d1veca_ 25 KPSPIQEESIPIA----LSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHH----HcCCCEEeeccCccccccccccchhhcccccccCcceEEEeecchhhHHHHHHHHHHhhcccC
Confidence 6899999999877 67899999999999999887665544332 3223 78999997 45556556665554 45
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--ccccCCccceEEEecc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDE 436 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~lIvDE 436 (819)
..+....|........... ....+++|+|++.+... ...+...+..++|+||
T Consensus 101 ~~~~~~~g~~~~~~~~~~l--------------------------~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDE 154 (206)
T d1veca_ 101 AKVMATTGGTNLRDDIMRL--------------------------DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDE 154 (206)
T ss_dssp CCEEEECSSSCHHHHHHHT--------------------------TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEET
T ss_pred cccccccCCccHHHHHHHH--------------------------HhccCeEEeCCccccccccchhccccccceEEEec
Confidence 6666777665554333321 24678999999988643 2223334567899999
Q ss_pred cccccCc--ccHHHHHHHhccc-CcEEEEeCCC
Q 003450 437 GHRLKNK--DSKLFSSLKQYST-RHRVLLTGTP 466 (819)
Q Consensus 437 aH~~kn~--~s~~~~~l~~l~~-~~~llLTgTP 466 (819)
||++-+. ...+...+..++. ...+++|||-
T Consensus 155 aD~ll~~~f~~~i~~I~~~~~~~~Q~~l~SAT~ 187 (206)
T d1veca_ 155 ADKLLSQDFVQIMEDIILTLPKNRQILLYSATF 187 (206)
T ss_dssp HHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred cccccccchHHHHHHHHHhCCCCCEEEEEEecC
Confidence 9998653 3445555666644 4568889993
No 34
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.26 E-value=1.9e-12 Score=98.02 Aligned_cols=52 Identities=42% Similarity=1.103 Sum_probs=47.3
Q ss_pred cccccccccccCCCCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCCC
Q 003450 48 DAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (819)
Q Consensus 48 ~~~~~~C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~ 99 (819)
+.+.++|.+|+++|+||.||.|+++||..|+.|++...|.+.|+|+.|....
T Consensus 6 d~~~~~C~~C~~~g~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~ 57 (61)
T d1mm2a_ 6 DHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCcCCCcCCCCCCeEEEeCCCCccCchhhcCCCcCcCCCCcEECCCCcCcc
Confidence 4566789999999999999999999999999999999999999999998643
No 35
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.19 E-value=4.7e-11 Score=116.86 Aligned_cols=153 Identities=15% Similarity=0.160 Sum_probs=102.6
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc-CCCC-ceEEEecC-cchHHHHHHHHHHcC--CC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ERIS-PHLVVAPL-STLRNWEREFATWAP--QM 359 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~-~~~~-~~LIv~P~-~ll~qW~~e~~~~~p--~~ 359 (819)
.+.|.|..++..+ ..|++.+++.++|+|||+..+..+..... ...+ ..||++|+ .+..|-.+++..+.. +.
T Consensus 34 ~pt~iQ~~aip~i----l~g~dvl~~a~TGsGKTlayllp~l~~i~~~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~ 109 (218)
T d2g9na1 34 KPSAIQQRAILPC----IKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGA 109 (218)
T ss_dssp SCCHHHHHHHHHH----HHTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHHTTTTC
T ss_pred CCCHHHHHHHHHH----HcCCCEEEEcccchhhhhhhhhhhhheecccccCccEEEEcccchhhhhHHHHHhhhccccce
Confidence 5899999999877 57899999999999999997665554433 3223 68999997 666777778877764 44
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccceEEEeccc
Q 003450 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEG 437 (819)
Q Consensus 360 ~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~lIvDEa 437 (819)
.+....+....... .........+|+|+|++.+.... ..+......++|+|||
T Consensus 110 ~~~~~~~~~~~~~~-------------------------~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlDEa 164 (218)
T d2g9na1 110 SCHACIGGTNVRAE-------------------------VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEA 164 (218)
T ss_dssp CEEEECC--CCCST-------------------------TTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESH
T ss_pred eEEeeecccchhHH-------------------------HHHHhcCCCEEEEeCChhHHHHHhcCCcccccceEEEeeec
Confidence 55555544322110 01112246789999999876432 2233345679999999
Q ss_pred ccccCc--ccHHHHHHHhccc-CcEEEEeCCC
Q 003450 438 HRLKNK--DSKLFSSLKQYST-RHRVLLTGTP 466 (819)
Q Consensus 438 H~~kn~--~s~~~~~l~~l~~-~~~llLTgTP 466 (819)
|++.+. .......+..++. ...+++|||-
T Consensus 165 D~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT~ 196 (218)
T d2g9na1 165 DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATM 196 (218)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred chhhcCchHHHHHHHHHhCCCCCeEEEEEecC
Confidence 999653 3445555666654 4567889994
No 36
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.19 E-value=1.6e-11 Score=118.39 Aligned_cols=121 Identities=14% Similarity=0.170 Sum_probs=91.5
Q ss_pred HHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhC------------------------------CCeEEEEeccCChHH
Q 003450 613 LDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK------------------------------KWQYERIDGKVGGAE 662 (819)
Q Consensus 613 l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~------------------------------g~~~~~l~G~~~~~~ 662 (819)
+.+++.++..+|+++|||+..+...+.+...|... ...++.++|+++.++
T Consensus 29 ~~~l~~~~i~~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~ 108 (201)
T d2p6ra4 29 FEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQ 108 (201)
T ss_dssp HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHH
T ss_pred HHHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhh
Confidence 34455666667999999999976555444443210 012567899999999
Q ss_pred HHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEE-------eCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeC
Q 003450 663 RQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-------YDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (819)
Q Consensus 663 R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~-------~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~ 735 (819)
|..+...|+++. +.+|++|.+++.|||+++.++||. ++.+.++..+.|+.|||+|.|....-.+|.+..+
T Consensus 109 r~~ie~~f~~g~---i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~ 185 (201)
T d2p6ra4 109 RRVVEDAFRRGN---IKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGK 185 (201)
T ss_dssp HHHHHHHHHTTS---CCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCG
T ss_pred HHHHHHHHhCCC---ceEEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCC
Confidence 999999998754 348999999999999997777665 4556789999999999999998777666655544
Q ss_pred C
Q 003450 736 G 736 (819)
Q Consensus 736 ~ 736 (819)
.
T Consensus 186 ~ 186 (201)
T d2p6ra4 186 R 186 (201)
T ss_dssp G
T ss_pred C
Confidence 4
No 37
>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.13 E-value=1.1e-12 Score=104.79 Aligned_cols=56 Identities=30% Similarity=0.597 Sum_probs=46.4
Q ss_pred cCCccchhhhHhhhhc---CCcceeeEeeecccccccccccCCCCcc-ccHHHHHHHHHH
Q 003450 187 IRPEWTTVDRILACRG---EDDEKEYLVKYKELSYDECYWEYESDIS-AFQPEIERFIKI 242 (819)
Q Consensus 187 ~~~~~~~~eril~~~~---~~~~~~~lvKw~~l~y~~~TWE~~~~~~-~~~~~~~~~~~~ 242 (819)
+.++|..|||||++|. ..+..+|||||+||+|++||||+.+++. .++..|++|..+
T Consensus 19 ~~~e~~~VERIi~~r~~~~~~g~~~YLVKWkg~~y~~~TWE~~~~l~~~~~~~I~~f~~R 78 (80)
T d2b2ya1 19 LHKQYQIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSR 78 (80)
T ss_dssp HHHHTTSEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEECHHHHHHHHHHHHHHHHHT
T ss_pred hccCceeeEEEEEEEecccCCCcEEEEEEeCCCChhhCccccHHHHhHhHHHHHHHHHHh
Confidence 4568899999999873 3567899999999999999999988764 367788898764
No 38
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.13 E-value=1.6e-12 Score=130.76 Aligned_cols=102 Identities=15% Similarity=0.162 Sum_probs=83.7
Q ss_pred CchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEecc--
Q 003450 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST-- 684 (819)
Q Consensus 607 s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st-- 684 (819)
..|+..|..+|..+ |.+.|||++...+++.|.++|... ++|+++..+|.+++++|.++..+ +||+|
T Consensus 11 ~~~~~~l~~~l~~~---~~~~iif~~~~~~~~~l~~~l~~~------~hg~~~~~~R~~~~~~f~~g~~~---vLVaT~a 78 (248)
T d1gkub2 11 DESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKGDYEKFVEGEID---HLIGTAH 78 (248)
T ss_dssp CCCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSSHHHHHHHHTSCS---EEEEECC
T ss_pred chHHHHHHHHHHHh---CCCEEEEECCHHHHHHHHHHHHHh------ccCCCCHHHHHHHHHHHHhCCCe---EEEEecc
Confidence 45777777888643 678999999999999999999853 68999999999999999887655 68888
Q ss_pred --ccccccCCccc-CCEEEEeCCCCCcchHHHHhHhhhhcCCC
Q 003450 685 --RAGGLGINLAT-ADTVIIYDSDWNPHADLQAMARAHRLGQT 724 (819)
Q Consensus 685 --~a~~~GinL~~-a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~ 724 (819)
..+++|||+|. +++||+||+||+ .|++||++|.|+.
T Consensus 79 ~~~v~~rGlDip~~v~~VI~~d~P~~----~~r~gR~~R~g~~ 117 (248)
T d1gkub2 79 YYGTLVRGLDLPERIRFAVFVGCPSF----RVTIEDIDSLSPQ 117 (248)
T ss_dssp ------CCSCCTTTCCEEEEESCCEE----EEECSCGGGSCHH
T ss_pred ccchhhhccCccccccEEEEeCCCcc----hhhhhhhhccCcc
Confidence 56899999995 999999999984 4778999998875
No 39
>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.13 E-value=2.1e-12 Score=100.34 Aligned_cols=56 Identities=29% Similarity=0.592 Sum_probs=45.8
Q ss_pred CccchhhhHhhhhc-----CCcceeeEeeecccccccccccCCCCcc-ccHHHHHHHHHHhh
Q 003450 189 PEWTTVDRILACRG-----EDDEKEYLVKYKELSYDECYWEYESDIS-AFQPEIERFIKIQS 244 (819)
Q Consensus 189 ~~~~~~eril~~~~-----~~~~~~~lvKw~~l~y~~~TWE~~~~~~-~~~~~~~~~~~~~~ 244 (819)
.+|.+|||||+++. ..+..+|||||+|++|++||||+++++. .++..+++|..+.+
T Consensus 4 ee~~~VErIld~r~~~~~~~~~~~eYlVKWkg~~y~~~TWE~~~~l~~~~~~~i~~f~~r~~ 65 (69)
T d2dy8a1 4 EEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNREN 65 (69)
T ss_dssp CSSSCEEEEEEEEEEECSSSCEEEEEEEEESCCSSCCCEEEEHHHHHHHSHHHHHHHHHHTT
T ss_pred cccccceEEeeEEeeeccCCCCeEEEEEEeCCCChhhCccccHHHhhhhhHHHHHHHHHHhh
Confidence 57899999999872 2356799999999999999999988774 36788999987543
No 40
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.10 E-value=1.5e-11 Score=89.54 Aligned_cols=44 Identities=41% Similarity=1.130 Sum_probs=39.1
Q ss_pred cccccCC---CCeEecCCCCccccccCcCCCCCCCCCCCcccCccCC
Q 003450 54 CQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 54 C~~c~~~---~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
|.+|+.. +.||.||.|++.||+.|+.||+..+|.++|+|+.|..
T Consensus 3 C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~ 49 (51)
T d1f62a_ 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CcCcCCCCCCCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence 6667644 4599999999999999999999999999999999974
No 41
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.09 E-value=1.4e-11 Score=118.04 Aligned_cols=118 Identities=17% Similarity=0.245 Sum_probs=92.4
Q ss_pred CchHHHHHHHHHHHHhcCceEEEEecchhHHHH--------HHHHHh-h--CCCeEEEEeccCChHHHHHHHHHhcCCCC
Q 003450 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDL--------LEDYLT-F--KKWQYERIDGKVGGAERQIRIDRFNAKNS 675 (819)
Q Consensus 607 s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~--------L~~~L~-~--~g~~~~~l~G~~~~~~R~~~i~~F~~~~~ 675 (819)
..|+..+.+.+....++|.++.+.|+.+...+. ..+.|. . .++++..+||.|++++|++++.+|.+++.
T Consensus 12 ~~~~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~ 91 (206)
T d1gm5a4 12 MDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRY 91 (206)
T ss_dssp SSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSS
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCE
Confidence 456677777777777789999888876543322 223332 2 26778899999999999999999988766
Q ss_pred CcEEEEeccccccccCCcccCCEEEEeCCC-CCcchHHHHhHhhhhcCCCCcE
Q 003450 676 SRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKV 727 (819)
Q Consensus 676 ~~~v~L~st~a~~~GinL~~a~~VI~~d~~-wnp~~~~Qa~gR~~R~Gq~~~V 727 (819)
+ +||||.+.++|||+++|++||+++++ +..+.+.|..||++|-|.+..+
T Consensus 92 ~---iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~ 141 (206)
T d1gm5a4 92 D---ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYC 141 (206)
T ss_dssp S---BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEE
T ss_pred E---EEEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeecccccee
Confidence 5 89999999999999999999999987 6899999999999999987655
No 42
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.08 E-value=6.6e-10 Score=108.08 Aligned_cols=159 Identities=14% Similarity=0.129 Sum_probs=101.8
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc-CCCC-ceEEEecC-cchHHHHHHHHHHcC--C
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ERIS-PHLVVAPL-STLRNWEREFATWAP--Q 358 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~-~~~~-~~LIv~P~-~ll~qW~~e~~~~~p--~ 358 (819)
..+.|.|..++..+ ..|+++++..++|+|||...+..+..... ...+ .+||++|+ .++.|-...+..+.. .
T Consensus 31 ~~pt~iQ~~aip~i----l~g~dvl~~a~TGsGKT~a~~lp~i~~l~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~ 106 (212)
T d1qdea_ 31 EEPSAIQQRAIMPI----IEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 106 (212)
T ss_dssp CSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHH----HcCCCEEeecccccchhhhhHhhhHhhhhccCCCcceEEEcccHHHhhhhhhhhcccccccc
Confidence 36899999999876 57899999999999999986555444333 3333 78999997 555666666666553 3
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc--ccccCCccceEEEecc
Q 003450 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDE 436 (819)
Q Consensus 359 ~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~lIvDE 436 (819)
..+....|......... ...+++|+|+|++.+... ...+.-.+..++|+||
T Consensus 107 ~~~~~~~~~~~~~~~~~---------------------------~~~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDE 159 (212)
T d1qdea_ 107 IKVHACIGGTSFVEDAE---------------------------GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 159 (212)
T ss_dssp CCEEEECC-------------------------------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred cceeeEeeccchhHHHH---------------------------HhcCCcEEEECCCccccccccCceecCcceEEeehh
Confidence 45555555433322111 113578999999988653 2223334567899999
Q ss_pred cccccC--cccHHHHHHHhccc-CcEEEEeCCCCCCChhHH
Q 003450 437 GHRLKN--KDSKLFSSLKQYST-RHRVLLTGTPLQNNLDEL 474 (819)
Q Consensus 437 aH~~kn--~~s~~~~~l~~l~~-~~~llLTgTP~~n~~~el 474 (819)
||++.+ ....+...+..++. ...+++|||- .+++.++
T Consensus 160 ad~lld~~f~~~v~~I~~~~~~~~Q~vl~SAT~-~~~v~~l 199 (212)
T d1qdea_ 160 ADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATM-PNDVLEV 199 (212)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSC-CHHHHHH
T ss_pred hhhhcccchHHHHHHHHHhCCCCCeEEEEEeeC-CHHHHHH
Confidence 999864 34455555666654 4568889994 3334443
No 43
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.06 E-value=3.6e-11 Score=118.98 Aligned_cols=114 Identities=15% Similarity=0.082 Sum_probs=90.4
Q ss_pred cCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHH----------HHHHHHhcCCCCCcEEEEeccccccc---
Q 003450 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAER----------QIRIDRFNAKNSSRFCFLLSTRAGGL--- 689 (819)
Q Consensus 623 ~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R----------~~~i~~F~~~~~~~~v~L~st~a~~~--- 689 (819)
++.|+|||++.+...+.|...|...|++...++|+++.+.| ..++..|..++. .+++.|.+..+
T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~---dvVVaT~~~a~g~~ 111 (299)
T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDF---DSVIDCNTCVTQTV 111 (299)
T ss_dssp HSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCB---SEEEECCEEEEEEE
T ss_pred cCCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCC---cEEEEEeehhccCC
Confidence 47899999999999999999999999999999999998876 456777765443 36777777666
Q ss_pred cCCcccCCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEEEEEEeCCCHHHHHH
Q 003450 690 GINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMM 743 (819)
Q Consensus 690 GinL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~li~~~TvEe~i~ 743 (819)
|+|+....+||++|.|.|+..++||+||++| |... +|+++..+|-++.++
T Consensus 112 giDid~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G---~~~~l~~~t~p~~~l 161 (299)
T d1a1va2 112 DFSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPG---IYRFVAPGERPSGMF 161 (299)
T ss_dssp ECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE---EEEESCSCCBCSCBC
T ss_pred CCCCCcceEEEeCCCCCCHHHHHhhccccCC-CCCc---eEEEEecCCCHHHHH
Confidence 7888889999999999999999999999999 6444 456666555444333
No 44
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.03 E-value=1.8e-09 Score=104.77 Aligned_cols=151 Identities=14% Similarity=0.136 Sum_probs=101.7
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc-CC-CCceEEEecCcch-HHHHHHHHHH--cCCC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ER-ISPHLVVAPLSTL-RNWEREFATW--APQM 359 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~-~~-~~~~LIv~P~~ll-~qW~~e~~~~--~p~~ 359 (819)
++.|.|..++..+ ..|+++++.+++|+|||+..+..+..... .. ....++++|...+ .+-...+... ..++
T Consensus 23 ~pt~iQ~~aip~i----l~g~dvi~~a~tGsGKTlay~lp~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (206)
T d1s2ma1 23 KPSPIQEEAIPVA----ITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 98 (206)
T ss_dssp SCCHHHHHHHHHH----HHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHH----HcCCCEEEecCCcchhhhhhccccccccccccccccceeeccchhhhhhhhhhhhhcccccCe
Confidence 5899999999877 56789999999999999886554444332 22 2367888886444 3333333332 2478
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccceEEEeccc
Q 003450 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEG 437 (819)
Q Consensus 360 ~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~lIvDEa 437 (819)
++...+|........... ....+|+|+|++.+.... ..+.-.+..++|+|||
T Consensus 99 ~~~~~~g~~~~~~~~~~l--------------------------~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DEa 152 (206)
T d1s2ma1 99 SCMVTTGGTNLRDDILRL--------------------------NETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEA 152 (206)
T ss_dssp CEEEECSSSCHHHHHHHT--------------------------TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESH
T ss_pred eEEeecCccchhhHHHHh--------------------------cccceEEEECCcccccccccceeecccceEEEeech
Confidence 888888877655443332 246899999999987532 2233335578999999
Q ss_pred ccccCc--ccHHHHHHHhccc-CcEEEEeCC
Q 003450 438 HRLKNK--DSKLFSSLKQYST-RHRVLLTGT 465 (819)
Q Consensus 438 H~~kn~--~s~~~~~l~~l~~-~~~llLTgT 465 (819)
|++-+. ...+...+..++. ...+++|||
T Consensus 153 D~l~~~~f~~~v~~I~~~l~~~~Q~il~SAT 183 (206)
T d1s2ma1 153 DKMLSRDFKTIIEQILSFLPPTHQSLLFSAT 183 (206)
T ss_dssp HHHSSHHHHHHHHHHHTTSCSSCEEEEEESC
T ss_pred hhhhhhhhHHHHHHHHHhCCCCCEEEEEEEe
Confidence 999764 3344455555543 456888999
No 45
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.02 E-value=1.8e-09 Score=105.12 Aligned_cols=159 Identities=11% Similarity=0.118 Sum_probs=99.1
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC-C-CceEEEecCcchH-H---HHHHHHHHcC-
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-I-SPHLVVAPLSTLR-N---WEREFATWAP- 357 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~-~-~~~LIv~P~~ll~-q---W~~e~~~~~p- 357 (819)
.+.|.|..++..+ ..|+++++.++||+|||+..+..+....... . ...++++|..... + +......+..
T Consensus 23 ~pt~iQ~~aip~~----l~G~dvii~a~TGSGKTlayllp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (209)
T d1q0ua_ 23 KPTEIQERIIPGA----LRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 98 (209)
T ss_dssp SCCHHHHHHHHHH----HHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCHHHHHHHHHH----HCCCCeEeecccccccceeeeeeeccccccccccccccccccccchhHHHHHHHHhhhccccc
Confidence 5899999999877 5689999999999999998766655544332 2 3678888854432 2 3333333331
Q ss_pred --CCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhcc--cccCCccceEEE
Q 003450 358 --QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMI 433 (819)
Q Consensus 358 --~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~lI 433 (819)
...+....|....... .......++|+|+|++.+.... ......+..++|
T Consensus 99 ~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lV 152 (209)
T d1q0ua_ 99 DRMIVARCLIGGTDKQKA--------------------------LEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILV 152 (209)
T ss_dssp GGCCCEEEECCCSHHHHT--------------------------TCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEE
T ss_pred cccccccccccchhhHHH--------------------------HHHhccCceEEEecCchhhhhhhhhccccccceEEE
Confidence 3344444444332211 0112246899999999886432 222334667899
Q ss_pred ecccccccCcc--cHHHHHHHhccc-CcEEEEeCCCCCCChhHH
Q 003450 434 VDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDEL 474 (819)
Q Consensus 434 vDEaH~~kn~~--s~~~~~l~~l~~-~~~llLTgTP~~n~~~el 474 (819)
+||||++.+.+ ..+...+..++. ...+++|||- .+++.++
T Consensus 153 iDEad~ll~~~f~~~v~~I~~~~~~~~Q~il~SATl-~~~v~~l 195 (209)
T d1q0ua_ 153 VDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATI-PEKLKPF 195 (209)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCC-CGGGHHH
T ss_pred EeecccccccccHHHHHHHHHHCCCCCEEEEEEccC-CHHHHHH
Confidence 99999996543 345555555644 4568899993 4444443
No 46
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=99.00 E-value=5.6e-10 Score=105.46 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=94.6
Q ss_pred HHHHHHHHHhcCceEEEEecchhHHHHHHHHHhh--CCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEecccccccc
Q 003450 613 LDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLG 690 (819)
Q Consensus 613 l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~--~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~G 690 (819)
+.+.+..-.++|++|.+.|+.+...+.+.+.+.. .++++..+||.|+.+++++++.+|.+++.+ +|+||....+|
T Consensus 20 i~~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~---ILv~TtvIEvG 96 (211)
T d2eyqa5 20 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN---VLVCTTIIETG 96 (211)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCC---EEEESSTTGGG
T ss_pred HHHHHHHHHHcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcc---eEEEehhhhhc
Confidence 4455555567899999999998877777777754 588999999999999999999999887665 89999999999
Q ss_pred CCcccCCEEEEeCCC-CCcchHHHHhHhhhhcCCC
Q 003450 691 INLATADTVIIYDSD-WNPHADLQAMARAHRLGQT 724 (819)
Q Consensus 691 inL~~a~~VI~~d~~-wnp~~~~Qa~gR~~R~Gq~ 724 (819)
||++.|+++|+.+++ +-.+++.|-.||++|-+..
T Consensus 97 iDvpnA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~ 131 (211)
T d2eyqa5 97 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ 131 (211)
T ss_dssp SCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBC
T ss_pred cCCCCCcEEEEecchhccccccccccceeeecCcc
Confidence 999999999999997 7999999999999996654
No 47
>d1q3la_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=98.97 E-value=2.8e-11 Score=87.68 Aligned_cols=48 Identities=27% Similarity=0.448 Sum_probs=44.4
Q ss_pred hhhhHhhhhcCCcceeeEeeecccccccccccCCCCccccHHHHHHHHH
Q 003450 193 TVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (819)
Q Consensus 193 ~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~ 241 (819)
+|||||++|...+..+|||||+|++++++|||+.+++ .++..|++|..
T Consensus 3 eVE~Il~~r~~~~~~~YlVkW~Gy~~~~~tWEp~~~l-~~~~~i~~f~~ 50 (52)
T d1q3la_ 3 AVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNL-DCQDLIQQYEA 50 (52)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE-ECHHHHHHHHH
T ss_pred eEEEEEEEEEeCCeEEEEEEECCCCCccCcEecHHHC-CCHHHHHHHHh
Confidence 7999999998889999999999999999999999998 56888999976
No 48
>d2b2ya2 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.96 E-value=7.1e-11 Score=95.18 Aligned_cols=72 Identities=28% Similarity=0.471 Sum_probs=47.3
Q ss_pred ccccccccccccCcCC-C------------CCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHH
Q 003450 101 DIDKILDCEMRPTVAG-D------------SDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKV 167 (819)
Q Consensus 101 ~~~~il~~r~~p~~~~-~------------~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~ 167 (819)
.|++|+++|+....+. . +.............||||||+|+||+||+|+|++.|.+.. . .+..++
T Consensus 3 ~IEkil~~R~g~~g~tg~~tt~~ave~d~~p~~~~d~~~~~~~~eylIKWkg~s~~hntWe~~e~L~~~~--~-~g~kkl 79 (95)
T d2b2ya2 3 TIERFMDCRIGRKGATGATTTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQN--V-RGMKKL 79 (95)
T ss_dssp BEEEEEEEEEECTTCCSSSSSHHHHHHHCCTTTTCC-CCSCCEEEEEEEETTSCGGGCEEECHHHHHHTT--C-BCHHHH
T ss_pred HHHHHHHHhccCCCCCCCccceeeecccCCcccccCCCCCCCcEEEEEEeCCCCcccCcccCHHHHhhhh--H-HHHHHH
Confidence 5789999997433221 1 1111111122345799999999999999999999997531 1 234689
Q ss_pred HhHHhhhc
Q 003450 168 NNFHRQMS 175 (819)
Q Consensus 168 ~~f~~~~~ 175 (819)
++|.++..
T Consensus 80 ~ny~kk~~ 87 (95)
T d2b2ya2 80 DNYKKKDQ 87 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988753
No 49
>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.88 E-value=3.4e-10 Score=86.65 Aligned_cols=54 Identities=26% Similarity=0.457 Sum_probs=47.2
Q ss_pred cchhhhHhhhhc-CCcceeeEeeecccccccccccCCCCccccHHHHHHHHHHhh
Q 003450 191 WTTVDRILACRG-EDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQS 244 (819)
Q Consensus 191 ~~~~eril~~~~-~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~~~~ 244 (819)
..+||+||+.|. .+|..+|||||+|.++.++|||+.+++..++..+++|.+...
T Consensus 6 ~y~VE~Ild~R~~~~g~~~YlVkW~Gy~~~~~TWEp~~~l~~~~~~i~~f~~~~~ 60 (66)
T d2dnta1 6 LYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHT 60 (66)
T ss_dssp SCCCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEETTTCTTCHHHHHHHHHHHS
T ss_pred eEEEEEEEEEEEcCCCcEEEEEEECCCCCccCeEecHHHHhhhHHHHHHHHHHcc
Confidence 368999999985 567889999999999999999999999878889999987543
No 50
>d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}
Probab=98.82 E-value=6.5e-10 Score=86.58 Aligned_cols=51 Identities=29% Similarity=0.505 Sum_probs=45.9
Q ss_pred chhhhHhhhhcCCcceeeEeeecccccccccccCCCCccccHHHHHHHHHHh
Q 003450 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQ 243 (819)
Q Consensus 192 ~~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~~~ 243 (819)
.+|||||+.|...+..+|||||+|++++++|||+.+++. +...|++|.+..
T Consensus 14 yeVE~Il~~r~~~~~~~YlVkW~Gy~~~~~TWEp~~nl~-~~~~i~~f~~~~ 64 (73)
T d1guwa_ 14 YVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLD-CPDLIAEFLQSQ 64 (73)
T ss_dssp CBEEEECCCBCCTTCCEECEEESSSCTTSCCCEETTTEE-CHHHHHHHHHHH
T ss_pred EEEEEEEEEEEcCCcEEEEEEECCCCCcCCcCcChHHCC-CHHHHHHHHHHh
Confidence 479999999988899999999999999999999999984 678899998743
No 51
>d2dnva1 b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.81 E-value=5.2e-10 Score=80.77 Aligned_cols=49 Identities=29% Similarity=0.324 Sum_probs=43.6
Q ss_pred cchhhhHhhhhcCCcceeeEeeecccccccccccCCCCccccHHHHHHHH
Q 003450 191 WTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFI 240 (819)
Q Consensus 191 ~~~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~ 240 (819)
..+||+||++|...+..+|||||+|.+.+++|||+.+++. +...++.|.
T Consensus 4 ~yeVE~Il~~r~~~~~~~YlVkW~gy~~~~~TWEp~~nl~-~~~li~~fe 52 (52)
T d2dnva1 4 VFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENIL-DARLLAAFE 52 (52)
T ss_dssp CCCCCCEEEEEESSSSEEEEECCSSCCCSSCCEEETTTCC-CHHHHHHHH
T ss_pred eEEEEEEEEEEEeCCeEEEEEEECCCCCcCCeEccHHHCC-ChHHHHhcC
Confidence 3689999999988899999999999999999999999984 577888874
No 52
>d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=98.80 E-value=7.1e-10 Score=85.93 Aligned_cols=53 Identities=17% Similarity=0.292 Sum_probs=45.3
Q ss_pred chhhhHhhhhcC--CcceeeEeeecccccccccccCCCCccccHHHHHHHHHHhh
Q 003450 192 TTVDRILACRGE--DDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQS 244 (819)
Q Consensus 192 ~~~eril~~~~~--~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~~~~ 244 (819)
..|||||++|.. .+..+|||||+|+++.++|||+.+++..++..+++|.+...
T Consensus 9 yeVE~Il~~R~~~~~~~~~YlVkW~Gy~~~~~TWEp~~~L~~~~~~i~~f~~~~~ 63 (70)
T d1g6za_ 9 YEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEWKRRKR 63 (70)
T ss_dssp SCCCSCSEEECCTTSSCCEEEECCTTTTSSCCEEECGGGGSSCHHHHHHHHHHHT
T ss_pred EEEEEEEEEEEccCCCeEEEEEEeCCCCcccCeeecHHHHhhhHHHHHHHHHHhh
Confidence 369999999843 34678999999999999999999999888889999987543
No 53
>d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.79 E-value=1.7e-09 Score=85.15 Aligned_cols=71 Identities=18% Similarity=0.352 Sum_probs=47.2
Q ss_pred CcccccccccccccCcCCCCCcccc---cccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhhh
Q 003450 99 LNDIDKILDCEMRPTVAGDSDVSKL---GSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQM 174 (819)
Q Consensus 99 ~~~~~~il~~r~~p~~~~~~~~~~~---~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~~ 174 (819)
...|++|++.|.++........... ........+|||||+|+||.||||+|++.|.. .++ .+++.+|.++.
T Consensus 5 ~~~IdkVldhR~k~~~e~~~~~~e~i~d~~~~~~~~eylVKW~g~~~~~~tWe~~~~L~~----~~~-~~k~~ny~k~~ 78 (81)
T d2dy7a1 5 FHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQ----VRG-LKRLDNYCKQF 78 (81)
T ss_dssp CCCCCEEEEEECCCTTTCCCCCCCCCSSHHHHHHHCEEEEECCCCSSCCCEEECHHHHTT----SSH-HHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCCCcceeeeeccccCCCCcEEEEEEECCCCcccCcccCHHHHhh----cch-HHHHHHHHHHH
Confidence 3568999999887665433211111 01112235999999999999999999999852 223 35788888764
No 54
>d1pfba_ b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=98.74 E-value=4.2e-10 Score=82.21 Aligned_cols=49 Identities=24% Similarity=0.305 Sum_probs=44.1
Q ss_pred chhhhHhhhhcCCcceeeEeeecccccccccccCCCCccccHHHHHHHHH
Q 003450 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (819)
Q Consensus 192 ~~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~ 241 (819)
.+||+||++|...+..+|||||+|.+++++|||+.+++. +...+++|.+
T Consensus 4 yeVE~Il~~r~~~~~~~YlVkW~Gy~~~~~TWEp~~nl~-~~~li~~f~~ 52 (55)
T d1pfba_ 4 YAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNIL-DRRLIDIYEQ 52 (55)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCC-STHHHHHHHT
T ss_pred EEEEEEEeEEEeCCeEEEEEEECCCCCCCCcCccHhHCC-CHHHHHHHHH
Confidence 589999999988899999999999999999999999886 4678898865
No 55
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.67 E-value=2e-09 Score=88.20 Aligned_cols=47 Identities=28% Similarity=0.813 Sum_probs=39.9
Q ss_pred ccccccccCC-----CCeEecCCCCccccccCcCCCCC----CCCCCCcccCccCC
Q 003450 51 DDSCQACGES-----ENLMSCDTCTYAYHAKCLVPPLK----APPSGSWRCPECVS 97 (819)
Q Consensus 51 ~~~C~~c~~~-----~~~~~C~~C~~~~H~~c~~p~~~----~~~~~~w~C~~c~~ 97 (819)
..+|.+|++. +.||.||.|.++||+.|+.|++. ..|.+.|+|+.|..
T Consensus 16 ~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~ 71 (88)
T d1weva_ 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred cCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCc
Confidence 4569999864 34999999999999999999986 46788999999974
No 56
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=98.64 E-value=7.3e-08 Score=87.66 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=96.7
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
...|+.++.+-+..+.+.|..|||++.++...+.|..+|...|+++..++.... +++..+-.. ++..+ .+.|+|+
T Consensus 16 ~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~--~~Ea~II~~-Ag~~g--~VtIATN 90 (175)
T d1tf5a4 16 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNH--EREAQIIEE-AGQKG--AVTIATN 90 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCH--HHHHHHHTT-TTSTT--CEEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhH--HHHHHHHHh-ccCCC--ceeehhh
Confidence 346888899999999999999999999999999999999999999999997643 333333333 22333 3799999
Q ss_pred cccccCCccc--------CCEEEEeCCCCCcchHHHHhHhhhhcCCCCcEEE
Q 003450 686 AGGLGINLAT--------ADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (819)
Q Consensus 686 a~~~GinL~~--------a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v 729 (819)
.+|+|.|+.- .=+||.-..+-|...+.|..||++|.|+......
T Consensus 91 mAGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~ 142 (175)
T d1tf5a4 91 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQF 142 (175)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEE
T ss_pred HHHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEE
Confidence 9999998743 2389999999999999999999999998765543
No 57
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.57 E-value=2.1e-08 Score=77.24 Aligned_cols=48 Identities=27% Similarity=0.870 Sum_probs=37.3
Q ss_pred cccccccccCC--CCeEec--CCCC-ccccccCcCCCCCCCCCCCcccCccCCCCc
Q 003450 50 KDDSCQACGES--ENLMSC--DTCT-YAYHAKCLVPPLKAPPSGSWRCPECVSPLN 100 (819)
Q Consensus 50 ~~~~C~~c~~~--~~~~~C--~~C~-~~~H~~c~~p~~~~~~~~~w~C~~c~~~~~ 100 (819)
+..+| +|++. ++++.| +.|. .+||+.|+ +|...|.++|+|+.|....+
T Consensus 15 e~~~C-iC~~~~~~~~i~c~~~~C~~~wfH~~Cv--gl~~~p~~~w~C~~C~~~~g 67 (71)
T d1wesa_ 15 EPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCV--SLTYKPKGKWYCPKCRGDSG 67 (71)
T ss_dssp SCCCS-TTCCCCCSSEECCSCTTCSCCCEETTTT--TCSSCCSSCCCCTTTSSCCS
T ss_pred CCCEE-EeCCCCCCCEEEEECCCCCCcCccCccC--CCCcCCCCcEECcCCccccC
Confidence 44678 89865 346666 5676 57999999 79999999999999986543
No 58
>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.46 E-value=2.4e-08 Score=76.88 Aligned_cols=60 Identities=27% Similarity=0.508 Sum_probs=43.5
Q ss_pred CcccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhhhc
Q 003450 99 LNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMS 175 (819)
Q Consensus 99 ~~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~~~ 175 (819)
...|++|++.|..+...+ ....+|||||+|++|.||||+|++.|...+ ...++.|+++..
T Consensus 6 ~~~VErIld~r~~~~~~~-----------~~~~eYlVKWkg~~y~~~TWE~~~~l~~~~------~~~i~~f~~r~~ 65 (69)
T d2dy8a1 6 FHVPERIIDSQRASLEDG-----------TSQLQYLVKWRRLNYDEATWENATDIVKLA------PEQVKHFQNREN 65 (69)
T ss_dssp SSCEEEEEEEEEEECSSS-----------CEEEEEEEEESCCSSCCCEEEEHHHHHHHS------HHHHHHHHHHTT
T ss_pred cccceEEeeEEeeeccCC-----------CCeEEEEEEeCCCChhhCccccHHHhhhhh------HHHHHHHHHHhh
Confidence 356899999875433221 123689999999999999999999985421 347888987653
No 59
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]}
Probab=98.35 E-value=5.7e-08 Score=69.56 Aligned_cols=43 Identities=30% Similarity=0.886 Sum_probs=35.5
Q ss_pred cccccccCC--CCeEecCC---CCccccccCcCCCCCCCCCCCcccCccCC
Q 003450 52 DSCQACGES--ENLMSCDT---CTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 52 ~~C~~c~~~--~~~~~C~~---C~~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
.+| +|+++ ++|+.|+. |...||..|+ .+...|.++|+||.|..
T Consensus 3 ~yC-~C~~~~~~~mi~Cd~~~C~~~WfH~~Cv--gl~~~p~~~w~C~~C~~ 50 (51)
T d2pnxa1 3 TYC-LCHQVSYGEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQ 50 (51)
T ss_dssp EET-TTTEECCSEEEECSCTTCSSCEEEGGGG--TCSSCCSSCCCCHHHHC
T ss_pred cEE-EcCCCCCCCEEEEecCCCCCCCEeCCcc--CCCcCCCCcEECcCCCC
Confidence 478 68854 45999986 4678999999 78889999999999974
No 60
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=98.35 E-value=8.3e-07 Score=89.35 Aligned_cols=95 Identities=16% Similarity=0.131 Sum_probs=72.5
Q ss_pred hcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEE
Q 003450 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (819)
Q Consensus 622 ~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~ 701 (819)
+.+.++|||+......+.+...|...|.++..++|.+..+++++ |.+++- .+|++|++++.|||+ .+.+||-
T Consensus 34 ~~~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~~----~~~~~~---~~~~~t~~~~~~~~~-~~~~vid 105 (299)
T d1yksa2 34 ADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPT----IKQKKP---DFILATDIAEMGANL-CVERVLD 105 (299)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC------------CCC---SEEEESSSTTCCTTC-CCSEEEE
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHhh----hhcCCc---CEEEEechhhhceec-CceEEEe
Confidence 35779999999999999999999999999999999999887765 444332 379999999999999 5888873
Q ss_pred ---------eCCC----------CCcchHHHHhHhhhhcCCC
Q 003450 702 ---------YDSD----------WNPHADLQAMARAHRLGQT 724 (819)
Q Consensus 702 ---------~d~~----------wnp~~~~Qa~gR~~R~Gq~ 724 (819)
||+. .+.+...||.||++|.+..
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~ 147 (299)
T d1yksa2 106 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNR 147 (299)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred cCceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCC
Confidence 4432 4556668999999997543
No 61
>d1x3pa1 b.34.13.2 (A:1-54) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=98.32 E-value=2.9e-08 Score=70.64 Aligned_cols=45 Identities=18% Similarity=0.484 Sum_probs=36.0
Q ss_pred hhhhHhhhhc--CCcceeeEeeecccccccccccCCCCccccHHHHHHHHH
Q 003450 193 TVDRILACRG--EDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (819)
Q Consensus 193 ~~eril~~~~--~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~~ 241 (819)
.||+||+.|- ..+..+|||||+|. +++|||+.+++. ...++.|..
T Consensus 2 vvE~Il~~R~~~~~~~~eYlVkW~gy--~~~TWEP~~nl~--~~li~~f~~ 48 (54)
T d1x3pa1 2 VAESVIGKRVGDDGKTIEYLVKWTDM--SDATWEPQDNVD--STLVLLYQQ 48 (54)
T ss_dssp CSSCCCCBSSCSSSCCCCBCCCCSSS--SSCSCSTTCCSS--SSSHHHHTS
T ss_pred HHHHHHHHHccCCCCeEEEEEEECCC--CCCCccchHHCC--HHHHHHHHH
Confidence 5899999994 33678999999985 789999999874 356777754
No 62
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=98.28 E-value=9.3e-08 Score=74.54 Aligned_cols=46 Identities=22% Similarity=0.621 Sum_probs=37.9
Q ss_pred cccccccCC---C-CeEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 52 DSCQACGES---E-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 52 ~~C~~c~~~---~-~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
..| +|+.. + .||.|+.|.+.||..|+.++....+.++|+|+.|...
T Consensus 17 ~~C-~C~~~~~~~~~mv~Cd~C~~w~H~~C~g~~~~~~~~~~~~C~~C~~~ 66 (72)
T d1weea_ 17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred EEe-eCCCCcCCCCeEEEeCCCCCcCchhhcCCccccCCCCcEECcCCcCc
Confidence 346 56643 2 3999999999999999998888888899999999854
No 63
>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.27 E-value=1.4e-07 Score=74.64 Aligned_cols=55 Identities=20% Similarity=0.515 Sum_probs=39.9
Q ss_pred cccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 003450 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (819)
Q Consensus 100 ~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~ 173 (819)
..|++|++.|...... ...+|||||+|++|.+|||+|++.|... ...+++.|.++
T Consensus 24 ~~VERIi~~r~~~~~~-------------g~~~YLVKWkg~~y~~~TWE~~~~l~~~------~~~~I~~f~~R 78 (80)
T d2b2ya1 24 QIVGRIIAHSNQKSAA-------------GYPDYYCKWQGLPYSECSWEDGALISKK------FQACIDEYFSR 78 (80)
T ss_dssp TSEEEEEEEEEEECTT-------------SCEEEEEEETTSCGGGCEEECHHHHHHH------HHHHHHHHHHT
T ss_pred eeeEEEEEEEecccCC-------------CcEEEEEEeCCCChhhCccccHHHHhHh------HHHHHHHHHHh
Confidence 3678888876422111 1268999999999999999999988532 23578888765
No 64
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=98.27 E-value=1.4e-07 Score=71.63 Aligned_cols=49 Identities=31% Similarity=0.739 Sum_probs=39.1
Q ss_pred ccccccccCCC----CeEecCCCCccccccCcCCCCCCCC-CCCcccCccCCCC
Q 003450 51 DDSCQACGESE----NLMSCDTCTYAYHAKCLVPPLKAPP-SGSWRCPECVSPL 99 (819)
Q Consensus 51 ~~~C~~c~~~~----~~~~C~~C~~~~H~~c~~p~~~~~~-~~~w~C~~c~~~~ 99 (819)
...|.+|++.. .+|.|+.|...||..|+.++....+ ...|+|+.|....
T Consensus 6 ~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~~ 59 (64)
T d1we9a_ 6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCcC
Confidence 35688898642 3899999999999999988776654 4789999998643
No 65
>d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.14 E-value=1.4e-07 Score=73.94 Aligned_cols=36 Identities=22% Similarity=0.437 Sum_probs=27.7
Q ss_pred ceeeEeeecccccccccccCCCCccccH--HHHHHHHH
Q 003450 206 EKEYLVKYKELSYDECYWEYESDISAFQ--PEIERFIK 241 (819)
Q Consensus 206 ~~~~lvKw~~l~y~~~TWE~~~~~~~~~--~~~~~~~~ 241 (819)
..+|||||+|++|.+||||+.+++..+. ..++.|.+
T Consensus 39 ~~eylVKW~g~~~~~~tWe~~~~L~~~~~~~k~~ny~k 76 (81)
T d2dy7a1 39 NYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCK 76 (81)
T ss_dssp HCEEEEECCCCSSCCCEEECHHHHTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCcccCcccCHHHHhhcchHHHHHHHHH
Confidence 3589999999999999999988776543 33555544
No 66
>d2dnva1 b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.08 E-value=2.3e-07 Score=66.55 Aligned_cols=40 Identities=38% Similarity=0.669 Sum_probs=32.8
Q ss_pred CcccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHH
Q 003450 99 LNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFL 154 (819)
Q Consensus 99 ~~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~ 154 (819)
...|++|++.|.... ..+|||||+|+++.+|||+|++.|.
T Consensus 4 ~yeVE~Il~~r~~~~----------------~~~YlVkW~gy~~~~~TWEp~~nl~ 43 (52)
T d2dnva1 4 VFAAEALLKRRIRKG----------------RMEYLVKWKGWSQKYSTWEPEENIL 43 (52)
T ss_dssp CCCCCCEEEEEESSS----------------SEEEEECCSSCCCSSCCEEETTTCC
T ss_pred eEEEEEEEEEEEeCC----------------eEEEEEEECCCCCcCCeEccHHHCC
Confidence 456899999875321 2789999999999999999999874
No 67
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=98.07 E-value=1.8e-05 Score=72.85 Aligned_cols=131 Identities=16% Similarity=0.159 Sum_probs=104.8
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 685 (819)
...|+.++.+-+..+...|..|||.+.++..-+.|...|...|+++..|+... .++-..+|.+ ++..+ .+-|+|+
T Consensus 16 ~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~-herEAeIIAq--AG~~G--aVTIATN 90 (219)
T d1nkta4 16 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKY-HEQEATIIAV--AGRRG--GVTVATN 90 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSC-HHHHHHHHHT--TTSTT--CEEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhh-HHHHHHHHHh--cccCC--cEEeecc
Confidence 45799999999999999999999999999999999999999999999999863 2333334443 23333 3699999
Q ss_pred cccccCCccc----------------------------------------------------CCEEEEeCCCCCcchHHH
Q 003450 686 AGGLGINLAT----------------------------------------------------ADTVIIYDSDWNPHADLQ 713 (819)
Q Consensus 686 a~~~GinL~~----------------------------------------------------a~~VI~~d~~wnp~~~~Q 713 (819)
.+|+|.|+.= .=+||-.+..-+...+.|
T Consensus 91 MAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeSrRIDnQ 170 (219)
T d1nkta4 91 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 170 (219)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred ccCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecccccccccccc
Confidence 9999999731 227899999999999999
Q ss_pred HhHhhhhcCCCCcEEEEEEEeCCCHHHHHHHHH
Q 003450 714 AMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (819)
Q Consensus 714 a~gR~~R~Gq~~~V~v~~li~~~TvEe~i~~~~ 746 (819)
-.||++|.|.......|- |+|+.++.+-
T Consensus 171 LRGRsGRQGDPGsSrFfl-----SLeDdLmr~F 198 (219)
T d1nkta4 171 LRGRSGRQGDPGESRFYL-----SLGDELMRRF 198 (219)
T ss_dssp HHHTSSGGGCCEEEEEEE-----ETTSHHHHHT
T ss_pred ccccccccCCCccceeEE-----eccHHHHHHH
Confidence 999999999876554432 6677777654
No 68
>d1q3la_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=98.06 E-value=1.4e-07 Score=67.74 Aligned_cols=49 Identities=27% Similarity=0.573 Sum_probs=37.0
Q ss_pred ccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 003450 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (819)
Q Consensus 101 ~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~ 173 (819)
.|++|++.|... ...+|||||+|+++.+|||+|++.|.+ ...+..|.++
T Consensus 3 eVE~Il~~r~~~----------------~~~~YlVkW~Gy~~~~~tWEp~~~l~~--------~~~i~~f~~~ 51 (52)
T d1q3la_ 3 AVEKIIDRRVRK----------------GMVEYYLKWKGYPETENTWEPENNLDC--------QDLIQQYEAS 51 (52)
T ss_dssp EEEEEEEEEEET----------------TEEEEEEEETTSCGGGCEEEEGGGEEC--------HHHHHHHHHH
T ss_pred eEEEEEEEEEeC----------------CeEEEEEEECCCCCccCcEecHHHCCC--------HHHHHHHHhc
Confidence 478888876421 126899999999999999999998732 2367778653
No 69
>d1pfba_ b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=98.05 E-value=1.4e-07 Score=68.52 Aligned_cols=50 Identities=28% Similarity=0.508 Sum_probs=38.0
Q ss_pred cccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhh
Q 003450 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (819)
Q Consensus 100 ~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~ 173 (819)
..|++|++.|... ...+|||||+|+++.+|||+|++.|.+ + ..+..|.+.
T Consensus 4 yeVE~Il~~r~~~----------------~~~~YlVkW~Gy~~~~~TWEp~~nl~~-----~---~li~~f~~~ 53 (55)
T d1pfba_ 4 YAAEKIIQKRVKK----------------GVVEYRVKWKGWNQRYNTWEPEVNILD-----R---RLIDIYEQT 53 (55)
T ss_dssp EEEEEEEEEEEET----------------TEEEEEEEETTSCGGGCEEEEGGGCCS-----T---HHHHHHHTS
T ss_pred EEEEEEEeEEEeC----------------CeEEEEEEECCCCCCCCcCccHhHCCC-----H---HHHHHHHHh
Confidence 3578888887532 127999999999999999999998843 2 257777654
No 70
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.02 E-value=6.2e-07 Score=70.96 Aligned_cols=49 Identities=18% Similarity=0.558 Sum_probs=37.0
Q ss_pred ccccccccCCC----CeEecCCCCccccccCcCCCCCCCC-CCCcccCccCCCCc
Q 003450 51 DDSCQACGESE----NLMSCDTCTYAYHAKCLVPPLKAPP-SGSWRCPECVSPLN 100 (819)
Q Consensus 51 ~~~C~~c~~~~----~~~~C~~C~~~~H~~c~~p~~~~~~-~~~w~C~~c~~~~~ 100 (819)
..+| +|++.. .+|.||.|...||..|+.......+ .+.|+|+.|....+
T Consensus 12 pv~C-iC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~g 65 (79)
T d1wepa_ 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CeEe-ECCCccCCCCcEEECCCCCCcEeccccCcchhcCCCCCEEECccCcCCcC
Confidence 3566 898652 2899999999999999966544433 36799999986543
No 71
>d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=97.99 E-value=1.1e-06 Score=67.43 Aligned_cols=55 Identities=20% Similarity=0.422 Sum_probs=40.1
Q ss_pred cccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhhhc
Q 003450 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMS 175 (819)
Q Consensus 100 ~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~~~ 175 (819)
..|++|++.|..... ...+|||||+|+++.+|||+|++.|.. . ...++.|.++..
T Consensus 9 yeVE~Il~~R~~~~~--------------~~~~YlVkW~Gy~~~~~TWEp~~~L~~----~---~~~i~~f~~~~~ 63 (70)
T d1g6za_ 9 YEVERIVDEKLDRNG--------------AVKLYRIRWLNYSSRSDTWEPPENLSG----C---SAVLAEWKRRKR 63 (70)
T ss_dssp SCCCSCSEEECCTTS--------------SCCEEEECCTTTTSSCCEEECGGGGSS----C---HHHHHHHHHHHT
T ss_pred EEEEEEEEEEEccCC--------------CeEEEEEEeCCCCcccCeeecHHHHhh----h---HHHHHHHHHHhh
Confidence 568999998742210 125899999999999999999999842 1 246788876543
No 72
>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.92 E-value=7.5e-07 Score=67.60 Aligned_cols=56 Identities=27% Similarity=0.588 Sum_probs=41.6
Q ss_pred CCcccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhhhc
Q 003450 98 PLNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMS 175 (819)
Q Consensus 98 ~~~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~~~ 175 (819)
....|++|++.|.... ...+|||||+|+++.+|||+|+++|.. .+ ..++.|.++..
T Consensus 5 ~~y~VE~Ild~R~~~~---------------g~~~YlVkW~Gy~~~~~TWEp~~~l~~----~~---~~i~~f~~~~~ 60 (66)
T d2dnta1 5 ELYEVERIVDKRKNKK---------------GKTEYLVRWKGYDSEDDTWEPEQHLVN----CE---EYIHDFNRRHT 60 (66)
T ss_dssp CSCCCCCEEEEEECTT---------------SCEEEEECBTTBCGGGCEEEETTTCTT----CH---HHHHHHHHHHS
T ss_pred ceEEEEEEEEEEEcCC---------------CcEEEEEEECCCCCccCeEecHHHHhh----hH---HHHHHHHHHcc
Confidence 3467899999874221 126899999999999999999998842 22 36888887654
No 73
>d1x3pa1 b.34.13.2 (A:1-54) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=97.87 E-value=8.3e-07 Score=63.01 Aligned_cols=48 Identities=25% Similarity=0.463 Sum_probs=34.2
Q ss_pred cccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhhh
Q 003450 102 IDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQM 174 (819)
Q Consensus 102 ~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~~ 174 (819)
+++|++.|+.+.. ...+|||||+|++ ++||+|++.|. + ..+..|.++.
T Consensus 3 vE~Il~~R~~~~~--------------~~~eYlVkW~gy~--~~TWEP~~nl~------~---~li~~f~~~~ 50 (54)
T d1x3pa1 3 AESVIGKRVGDDG--------------KTIEYLVKWTDMS--DATWEPQDNVD------S---TLVLLYQQQQ 50 (54)
T ss_dssp SSCCCCBSSCSSS--------------CCCCBCCCCSSSS--SCSCSTTCCSS------S---SSHHHHTSSC
T ss_pred HHHHHHHHccCCC--------------CeEEEEEEECCCC--CCCccchHHCC------H---HHHHHHHHhC
Confidence 5788887753311 1268999999986 79999999873 2 2577887654
No 74
>d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}
Probab=97.87 E-value=1.2e-06 Score=67.59 Aligned_cols=52 Identities=31% Similarity=0.534 Sum_probs=39.7
Q ss_pred cccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHHHhhcChhHHHHHHhHHhhhc
Q 003450 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMS 175 (819)
Q Consensus 100 ~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~~~~~~~~~~~~~~~f~~~~~ 175 (819)
..|++|++.|... ...+|||||+|+++.+|||+|+++|.+ + ..+..|.++..
T Consensus 14 yeVE~Il~~r~~~----------------~~~~YlVkW~Gy~~~~~TWEp~~nl~~-----~---~~i~~f~~~~~ 65 (73)
T d1guwa_ 14 YVVEKVLDRRVVK----------------GKVEYLLKWKGFSDEDNTWEPEENLDC-----P---DLIAEFLQSQK 65 (73)
T ss_dssp CBEEEECCCBCCT----------------TCCEECEEESSSCTTSCCCEETTTEEC-----H---HHHHHHHHHHC
T ss_pred EEEEEEEEEEEcC----------------CcEEEEEEECCCCCcCCcCcChHHCCC-----H---HHHHHHHHHhh
Confidence 4689999987431 126899999999999999999998832 2 36788876543
No 75
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.78 E-value=4.3e-07 Score=71.66 Aligned_cols=48 Identities=21% Similarity=0.603 Sum_probs=35.2
Q ss_pred ccccccccccCC---CCeEecCCCCccccccCcCCCC-----CCCCCCCcccCccCC
Q 003450 49 AKDDSCQACGES---ENLMSCDTCTYAYHAKCLVPPL-----KAPPSGSWRCPECVS 97 (819)
Q Consensus 49 ~~~~~C~~c~~~---~~~~~C~~C~~~~H~~c~~p~~-----~~~~~~~w~C~~c~~ 97 (819)
.+..+| +|++. +.||.|+.|...||..|+..+. ...+...|+|+.|..
T Consensus 14 ~~~~~C-iC~~~~~~~~mi~Cd~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~ 69 (76)
T d1wema_ 14 PNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp TTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCcCEE-ECCCccCCCeEEEECCCCCcCCccccCCCcccccccCCCCCcEECCCCcC
Confidence 345668 78754 4499999999999999995332 123457799999963
No 76
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=97.67 E-value=0.00017 Score=69.33 Aligned_cols=156 Identities=15% Similarity=0.076 Sum_probs=96.5
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcch----HHHHHHHHHHcCCC
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL----RNWEREFATWAPQM 359 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll----~qW~~e~~~~~p~~ 359 (819)
...++-|+-|.--| +.|-|.-+.||=|||+++...+. +.....+++-||+.+.-+ .+|...+-+++ ++
T Consensus 79 ~RhyDVQLiGgi~L------~~G~iaem~TGEGKTL~a~l~a~-l~al~g~~vhvvTvNdyLA~RDae~m~~iy~~l-Gl 150 (273)
T d1tf5a3 79 MFPFKVQLMGGVAL------HDGNIAEMKTGEGKTLTSTLPVY-LNALTGKGVHVVTVNEYLASRDAEQMGKIFEFL-GL 150 (273)
T ss_dssp CCCCHHHHHHHHHH------HTTSEEECCTTSCHHHHHHHHHH-HHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHT-TC
T ss_pred eEEehhHHHHHHHH------HhhhheeecCCCcchhHHHHHHH-HHHhcCCCceEEecCccccchhhhHHhHHHHHc-CC
Confidence 34666777776544 45679999999999987644333 222333467777777666 45999999998 88
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc---------ccccCCccce
Q 003450 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---------SASLKPIKWQ 430 (819)
Q Consensus 360 ~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~---------~~~l~~~~~~ 430 (819)
.|.+........... .....||+-.|...+.-| .+.....++.
T Consensus 151 svg~~~~~~~~~~r~----------------------------~~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~ 202 (273)
T d1tf5a3 151 TVGLNLNSMSKDEKR----------------------------EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLH 202 (273)
T ss_dssp CEEECCTTSCHHHHH----------------------------HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCC
T ss_pred CccccccccCHHHHH----------------------------HHhhCCceecchhhhhhhhcchhhhcChhhhccCCCC
Confidence 888776554433222 224678888887766432 2233345788
Q ss_pred EEEecccccccC---------------cccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhh
Q 003450 431 CMIVDEGHRLKN---------------KDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFML 477 (819)
Q Consensus 431 ~lIvDEaH~~kn---------------~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~l 477 (819)
+.||||++.+-= -.+-.++.+..+ .++.-+||||-. ....|++.+
T Consensus 203 ~aIvDEvDsiliDeartpliisg~~~~~a~it~q~~f~~-y~~l~gmtgta~-~~~~e~~~i 262 (273)
T d1tf5a3 203 FAVIDEVDSILIDEARTPLIISGQSMTLATITFQNYFRM-YEKLAGMTGTAK-TEEEEFRNI 262 (273)
T ss_dssp EEEEETHHHHHTTTTTCEEEEEEEEEEEEEEEHHHHHTT-SSEEEEEESCCG-GGHHHHHHH
T ss_pred EEEEEcchhhhhhccCCceEeccCccchhhhhHHHHHHH-HHHHhCCccccH-HHHHHHHhc
Confidence 999999987621 112223333332 346678999952 334444444
No 77
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=97.67 E-value=4.7e-06 Score=65.60 Aligned_cols=46 Identities=28% Similarity=0.733 Sum_probs=33.0
Q ss_pred ccccccccCC---CCeEecC--CCCccccccCcCCCCCCCC-------CCCcccCccCCCC
Q 003450 51 DDSCQACGES---ENLMSCD--TCTYAYHAKCLVPPLKAPP-------SGSWRCPECVSPL 99 (819)
Q Consensus 51 ~~~C~~c~~~---~~~~~C~--~C~~~~H~~c~~p~~~~~~-------~~~w~C~~c~~~~ 99 (819)
..+| +|+.. +.++.|+ .|..+||..|+ .+...| ...|+|+.|....
T Consensus 16 ~~~C-~C~~~~~~~~~i~c~c~~C~~W~H~~Cv--gi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T d1wewa_ 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCV--ILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHH--SCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred ccEe-ECCCccCCCcEEEEeCCCCCcCCCcccc--CccccccccccCCCCEEECCCCcCcC
Confidence 4568 79864 4588887 79999999998 333222 2369999997543
No 78
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.58 E-value=0.00023 Score=68.78 Aligned_cols=121 Identities=16% Similarity=0.104 Sum_probs=81.5
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcch----HHHHHHHHHHcCCC
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL----RNWEREFATWAPQM 359 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll----~qW~~e~~~~~p~~ 359 (819)
...++-|+-|.-.| +.|-|.-+.||=|||+++...+.. ..-..+++-||+.+.-+ .+|...+-+++ ++
T Consensus 96 mRhyDVQLiGgi~l------~~g~iaem~TGEGKTL~a~l~a~l-~al~g~~vhvvTvNdyLA~RDa~~m~~~y~~l-Gl 167 (288)
T d1nkta3 96 QRPFDVQVMGAAAL------HLGNVAEMKTGEGKTLTCVLPAYL-NALAGNGVHIVTVNDYLAKRDSEWMGRVHRFL-GL 167 (288)
T ss_dssp CCCCHHHHHHHHHH------HTTEEEECCTTSCHHHHTHHHHHH-HHTTTSCEEEEESSHHHHHHHHHHHHHHHHHT-TC
T ss_pred ceeeeehhHHHHHH------hhhhhhcccCCCchhHHHHHHHHH-HHhcCCCeEEEecCchhhhhhHHHHHHHHHHh-CC
Confidence 34566788876544 468899999999999886443332 22233466777776555 45999999998 88
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEEchhhHHhhc---------ccccCCccce
Q 003450 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---------SASLKPIKWQ 430 (819)
Q Consensus 360 ~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~---------~~~l~~~~~~ 430 (819)
.|.+............ .+..||+-.|...+.-| .+..-...++
T Consensus 168 svg~~~~~~~~~~~~~----------------------------~Y~~di~Y~t~~e~gfDyLrd~~~~~~~~~~~r~~~ 219 (288)
T d1nkta3 168 QVGVILATMTPDERRV----------------------------AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHH 219 (288)
T ss_dssp CEEECCTTCCHHHHHH----------------------------HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCC
T ss_pred CcCcccccCChHHHHH----------------------------HhhcccccccHHHHhhhhhhhhhccChhhhcccCCc
Confidence 8888776655443222 24668888887666432 2333345788
Q ss_pred EEEecccccc
Q 003450 431 CMIVDEGHRL 440 (819)
Q Consensus 431 ~lIvDEaH~~ 440 (819)
+.||||++.+
T Consensus 220 ~aIvDEvDsi 229 (288)
T d1nkta3 220 YAIVDEVDSI 229 (288)
T ss_dssp EEEETTHHHH
T ss_pred EEEEEccccc
Confidence 9999999876
No 79
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
Probab=97.50 E-value=0.00039 Score=71.77 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=43.8
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc---CCCCceEEEecCcchH
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG---ERISPHLVVAPLSTLR 346 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~---~~~~~~LIv~P~~ll~ 346 (819)
.+-+.|+.|+.-. ..++-++|.++.|+|||.++..++..+.. ....++++++|+....
T Consensus 148 ~~~~~Q~~A~~~a----l~~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA 208 (359)
T d1w36d1 148 DEINWQKVAAAVA----LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAA 208 (359)
T ss_dssp TSCCHHHHHHHHH----HTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHH
T ss_pred ccccHHHHHHHHH----HcCCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcHHHH
Confidence 4667999999855 35678999999999999988776666543 2334899999985543
No 80
>d2b2ya2 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.48 E-value=1.4e-05 Score=63.87 Aligned_cols=42 Identities=26% Similarity=0.389 Sum_probs=31.0
Q ss_pred hcCCcceeeEeeecccccccccccCCCCccc----cHHHHHHHHHH
Q 003450 201 RGEDDEKEYLVKYKELSYDECYWEYESDISA----FQPEIERFIKI 242 (819)
Q Consensus 201 ~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~----~~~~~~~~~~~ 242 (819)
+...+..+|||||+|.+|.+||||+++++.. -...+++|...
T Consensus 40 ~~~~~~~eylIKWkg~s~~hntWe~~e~L~~~~~~g~kkl~ny~kk 85 (95)
T d2b2ya2 40 NKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKK 85 (95)
T ss_dssp CCSCCEEEEEEEETTSCGGGCEEECHHHHHHTTCBCHHHHHHHHHH
T ss_pred CCCCCcEEEEEEeCCCCcccCcccCHHHHhhhhHHHHHHHHHHHHH
Confidence 3345678999999999999999999876531 13456677653
No 81
>d2huga1 b.34.13.2 (A:3-57) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=97.07 E-value=6.5e-05 Score=52.15 Aligned_cols=47 Identities=28% Similarity=0.606 Sum_probs=38.2
Q ss_pred ccchhhhHhhhhcCCcceeeEeeecccccccccccCCCCccccHHHHHHHH
Q 003450 190 EWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFI 240 (819)
Q Consensus 190 ~~~~~eril~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~~~~~~~~~ 240 (819)
+|.+|+|||+.|......||||+|++- .+.+|.+...+.. +.+..|.
T Consensus 4 ey~EV~~Il~~R~~g~~~EYLVeWkDg--~~~sWV~a~~Ia~--Dvv~dfE 50 (55)
T d2huga1 4 EYAEVDEIVEKRGKGKDVEYLVRWKDG--GDCEWVKGVHVAE--DVAKDYE 50 (55)
T ss_dssp CCCCSSCCCCCCCSSBCCCCEEECTTS--SSEEECCTTBCCH--HHHHTTH
T ss_pred hhhhHHHHHhhhccCCCeEEEEEEcCC--CCCccccHHHHHH--HHHHHHH
Confidence 578999999999888899999999973 6789999887753 4555554
No 82
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=96.76 E-value=0.006 Score=57.37 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=38.9
Q ss_pred CCchhHHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~---~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
.++|+|....+.+...+..++ ..|+.++.|+|||..|..++..+...
T Consensus 2 ~~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~ 51 (207)
T d1a5ta2 2 RWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (207)
T ss_dssp CCCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CCCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcccc
Confidence 478999998888877766654 47889999999999999999988754
No 83
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=96.18 E-value=0.029 Score=53.71 Aligned_cols=42 Identities=24% Similarity=0.147 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~~---~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
|.+.+.+|..+...++ ..||.++.|+|||..|.+++..+...
T Consensus 17 ~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~ 61 (239)
T d1njfa_ 17 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 61 (239)
T ss_dssp CHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCc
Confidence 4566666665555443 36889999999999999888887654
No 84
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=96.05 E-value=0.0037 Score=60.79 Aligned_cols=41 Identities=34% Similarity=0.502 Sum_probs=29.3
Q ss_pred HHHHHHHHhhcC---CCceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 003450 292 EGLNFLRFSWSK---QTHVILADEMGLGKTIQSIAFLASLFGER 332 (819)
Q Consensus 292 ~~v~~l~~~~~~---~~~~iLade~GlGKT~~~i~~l~~l~~~~ 332 (819)
+..+.|..+... ..+.||.++.|+|||..+.+++..+....
T Consensus 18 ~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~ 61 (252)
T d1sxje2 18 ELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPG 61 (252)
T ss_dssp HHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTT
T ss_pred HHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhhcCcc
Confidence 344445444333 34689999999999999999998876543
No 85
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=95.94 E-value=0.045 Score=52.79 Aligned_cols=128 Identities=14% Similarity=0.081 Sum_probs=93.4
Q ss_pred EecCCHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHhcCCCcccCCCCCCccCcHHHHHHhhhcCchHHHHHHH
Q 003450 537 RVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKM 616 (819)
Q Consensus 537 ~~~ls~~q~~~y~~i~~~~~~~l~~~~~~~~~~~~~~~~lr~~~~hp~l~~~~~~~~~~~~~~~~~l~~~s~Kl~~l~~l 616 (819)
+.+||+.|++.++++..... .-..-..|+.+.. .|||..+....
T Consensus 81 PFeLT~~Q~~ai~ei~~d~~---------------------~~~~m~rLL~Gdv---------------GSGKT~Va~~a 124 (264)
T d1gm5a3 81 PFKLTNAQKRAHQEIRNDMI---------------------SEKPMNRLLQGDV---------------GSGKTVVAQLA 124 (264)
T ss_dssp SSCCCHHHHHHHHHHHHHHH---------------------SSSCCCCEEECCS---------------SSSHHHHHHHH
T ss_pred cccCCchHHHHHHHHHHHhh---------------------ccCcceeeeeccc---------------cccccHHHHHH
Confidence 45799999999988765431 0001122344332 68999988888
Q ss_pred HHHHHhcCceEEEEecchh----HHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccc-cccC
Q 003450 617 MVKLKEQGHRVLIYSQFQH----MLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG-GLGI 691 (819)
Q Consensus 617 l~~l~~~g~kvlIFs~~~~----~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~-~~Gi 691 (819)
+......|.++++.+.-.. +...+.++|...|+.+..++|+++..+|.++....++++.+ ++|.|.++ -..+
T Consensus 125 ~~~~~~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~---iiIGThsl~~~~~ 201 (264)
T d1gm5a3 125 ILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQID---VVIGTHALIQEDV 201 (264)
T ss_dssp HHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCC---EEEECTTHHHHCC
T ss_pred HHHHHhcccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCC---EEEeehHHhcCCC
Confidence 8888888999999998644 45667777777899999999999999999999999886654 56666665 5567
Q ss_pred CcccCCEEEEeC
Q 003450 692 NLATADTVIIYD 703 (819)
Q Consensus 692 nL~~a~~VI~~d 703 (819)
.+.....||+=+
T Consensus 202 ~f~~LglviiDE 213 (264)
T d1gm5a3 202 HFKNLGLVIIDE 213 (264)
T ss_dssp CCSCCCEEEEES
T ss_pred Cccccceeeecc
Confidence 666666666543
No 86
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}
Probab=95.85 E-value=0.031 Score=51.75 Aligned_cols=52 Identities=17% Similarity=0.015 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCC--ceEEEecC
Q 003450 290 QLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERIS--PHLVVAPL 342 (819)
Q Consensus 290 Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~--~~LIv~P~ 342 (819)
|++.+..+... ..+...|+.++.|+|||-.|+.++..+...... -++++.|.
T Consensus 2 ~~~~l~~~i~~-~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~ 55 (198)
T d2gnoa2 2 QLETLKRIIEK-SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE 55 (198)
T ss_dssp HHHHHHHHHHT-CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred HHHHHHHHHhc-CCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCC
Confidence 66666655443 356688999999999999999988876543322 47777774
No 87
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=95.48 E-value=0.018 Score=54.58 Aligned_cols=56 Identities=20% Similarity=0.273 Sum_probs=33.5
Q ss_pred CccceEEEecccccccCccc-HHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhccc
Q 003450 426 PIKWQCMIVDEGHRLKNKDS-KLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFL 481 (819)
Q Consensus 426 ~~~~~~lIvDEaH~~kn~~s-~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~~l 481 (819)
..++.++|+||+|++..... .+...+.......++.++.++...-..-+-+....+
T Consensus 99 ~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~sr~~~i 155 (224)
T d1sxjb2 99 PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAIL 155 (224)
T ss_dssp TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred CcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCchhhhhhHHHHHHHHh
Confidence 34577999999999954332 223344444566667777666555544455544443
No 88
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}
Probab=95.46 E-value=0.0085 Score=59.89 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=47.6
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcC---CCCceEEEecC-cchHHHHHHHHHHc
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE---RISPHLVVAPL-STLRNWEREFATWA 356 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~---~~~~~LIv~P~-~ll~qW~~e~~~~~ 356 (819)
+|.|-|.++|.+ ..+.++|.+..|+|||.+++.-+.++... .+..+||++++ +.+..-...+.+..
T Consensus 1 ~L~~eQ~~av~~------~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~tn~a~~~i~~~~~~~~ 70 (306)
T d1uaaa1 1 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 70 (306)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHhC------CCCCEEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCcHHHHHHHHHHHHHhc
Confidence 488999999973 35668899999999999988777666532 33589999997 44444444454443
No 89
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=95.41 E-value=0.018 Score=59.65 Aligned_cols=74 Identities=23% Similarity=0.260 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHhhcCC-CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEEEEec
Q 003450 289 YQLEGLNFLRFSWSKQ-THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVG 366 (819)
Q Consensus 289 ~Q~~~v~~l~~~~~~~-~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~~~~g 366 (819)
-|=+++.-|......| +..+|.+-+|+|||+.+.+++... .+|+|||+|+ ....+|.+++..|+|+-.+..+..
T Consensus 15 DQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~l~~~~----~rp~LVVt~n~~~A~qL~~dL~~~l~~~~v~~f~~ 90 (413)
T d1t5la1 15 DQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQV----NKPTLVIAHNKTLAGQLYSELKEFFPHNAVEYFVS 90 (413)
T ss_dssp THHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHHHHHHH----TCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECC
T ss_pred CCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHHHHHHHh----CCCEEEEeCCHHHHHHHHHHHHHHcCCCceeeccc
Confidence 6778888777777666 457889999999999887777654 4599999997 566889999999998877766543
No 90
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=95.29 E-value=0.035 Score=52.55 Aligned_cols=39 Identities=23% Similarity=0.360 Sum_probs=27.5
Q ss_pred HHHHHHHHhhcCCC--ceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 292 EGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 292 ~~v~~l~~~~~~~~--~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
+.+..|..+...+. +.||.++.|+|||..+-+++..+..
T Consensus 21 ~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~~ 61 (227)
T d1sxjc2 21 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 61 (227)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhhc
Confidence 34444444434433 5899999999999999888887643
No 91
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=95.06 E-value=0.079 Score=49.95 Aligned_cols=96 Identities=10% Similarity=0.085 Sum_probs=74.4
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHH----HHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEE
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDL----LEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~----L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L 681 (819)
.|||-.+....+......|.++++.+.-...... +.+.|...|..+..++|..+..+|.+++....++... ++
T Consensus 86 GsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~---iv 162 (233)
T d2eyqa3 86 GFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID---IL 162 (233)
T ss_dssp CTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCS---EE
T ss_pred CCCcHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCC---EE
Confidence 6899999999998888999999999987655444 4445556788999999999999999999999887655 67
Q ss_pred eccccc-cccCCcccCCEEEEeCC
Q 003450 682 LSTRAG-GLGINLATADTVIIYDS 704 (819)
Q Consensus 682 ~st~a~-~~GinL~~a~~VI~~d~ 704 (819)
|.|+++ ...+.+...-.||+=+-
T Consensus 163 iGths~l~~~~~f~~LgLiIiDEe 186 (233)
T d2eyqa3 163 IGTHKLLQSDVKFKDLGLLIVDEE 186 (233)
T ss_dssp EECTHHHHSCCCCSSEEEEEEESG
T ss_pred EeehhhhccCCccccccceeeech
Confidence 777765 34566666555555433
No 92
>d2huga1 b.34.13.2 (A:3-57) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=95.01 E-value=0.0021 Score=44.48 Aligned_cols=38 Identities=26% Similarity=0.619 Sum_probs=28.7
Q ss_pred cccccccccccccCcCCCCCcccccccchhhhhhhhhccCCCcccccccChHHHHH
Q 003450 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLK 155 (819)
Q Consensus 100 ~~~~~il~~r~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~s~~h~~W~~~~~l~~ 155 (819)
..+++|+..|..-. ..||||+|++-+ .++|+|+..+..
T Consensus 6 ~EV~~Il~~R~~g~----------------~~EYLVeWkDg~--~~sWV~a~~Ia~ 43 (55)
T d2huga1 6 AEVDEIVEKRGKGK----------------DVEYLVRWKDGG--DCEWVKGVHVAE 43 (55)
T ss_dssp CCSSCCCCCCCSSB----------------CCCCEEECTTSS--SEEECCTTBCCH
T ss_pred hhHHHHHhhhccCC----------------CeEEEEEEcCCC--CCccccHHHHHH
Confidence 46788888764211 289999999987 789999987743
No 93
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.84 E-value=0.0034 Score=47.01 Aligned_cols=48 Identities=31% Similarity=0.780 Sum_probs=35.5
Q ss_pred cccccccccC--CCCeEecCCCCccccccCcCCCC--C----------CCCCCCcccCccCC
Q 003450 50 KDDSCQACGE--SENLMSCDTCTYAYHAKCLVPPL--K----------APPSGSWRCPECVS 97 (819)
Q Consensus 50 ~~~~C~~c~~--~~~~~~C~~C~~~~H~~c~~p~~--~----------~~~~~~w~C~~c~~ 97 (819)
++..|.+|.. +..++.|-.|.|.||-.||..-- . +-.+-.|.|..|.+
T Consensus 14 ~D~mC~vC~v~t~~~l~pCRvCtRv~H~~CL~r~gyl~~e~a~e~~e~A~T~~GWSC~~C~n 75 (89)
T d1wila_ 14 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred cCccccccCcccccceecceeecchhhHHHHHHhcccccHHHHHHHHhhcCCCCcchhhhcc
Confidence 5567999973 45688999999999999996531 1 11234599999975
No 94
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=94.59 E-value=0.022 Score=57.20 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=43.1
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC---CCceEEEecCcch
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTL 345 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~---~~~~LIv~P~~ll 345 (819)
.|.+-|.++|+ ...+..++.+..|+|||.+++.-+.++...+ +..+|+++++...
T Consensus 11 ~L~~eQ~~~v~------~~~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t~~a 68 (318)
T d1pjra1 11 HLNKEQQEAVR------TTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKA 68 (318)
T ss_dssp TSCHHHHHHHH------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHH
T ss_pred hCCHHHHHHHh------CCCCCEEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEeccHHH
Confidence 38899999987 3456788999999999999988777776433 2378999997544
No 95
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=94.55 E-value=0.037 Score=52.57 Aligned_cols=39 Identities=28% Similarity=0.455 Sum_probs=27.9
Q ss_pred HHHHHHHHhhcCC--CceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 292 EGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 292 ~~v~~l~~~~~~~--~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
+.+..|..+...+ .+.||.++.|+|||..+-+++..+..
T Consensus 31 ~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~~ 71 (231)
T d1iqpa2 31 HIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFG 71 (231)
T ss_dssp HHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4444454444433 46899999999999999888877643
No 96
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=94.45 E-value=0.05 Score=52.64 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=24.1
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
...|.||.++.|.|||..+-.++..+...
T Consensus 38 ~k~n~lLVG~~GvGKTalv~~la~ri~~~ 66 (268)
T d1r6bx2 38 RKNNPLLVGESGVGKTAIAEGLAWRIVQG 66 (268)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred ccCCcEEECCCCCcHHHHHHHHHHHHHhC
Confidence 45689999999999999888888777654
No 97
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=93.32 E-value=0.088 Score=47.96 Aligned_cols=53 Identities=15% Similarity=0.217 Sum_probs=35.4
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCC------CceEEEecCcch------HHHHHHHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERI------SPHLVVAPLSTL------RNWEREFATW 355 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~------~~~LIv~P~~ll------~qW~~e~~~~ 355 (819)
...|.||.++.|.|||..+-.++..+..... .+++-+-+.+++ .+|+..+...
T Consensus 42 ~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~i 106 (195)
T d1jbka_ 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHH
T ss_pred CCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccCCccHHHHHHHHHH
Confidence 4568999999999999988887777765431 234444444554 3666666543
No 98
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=93.22 E-value=0.11 Score=53.41 Aligned_cols=76 Identities=24% Similarity=0.260 Sum_probs=59.4
Q ss_pred CchhHHHHHHHHHHhhcCCCc-eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHHHHHcCCCeEEE
Q 003450 286 LHPYQLEGLNFLRFSWSKQTH-VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVM 363 (819)
Q Consensus 286 L~~~Q~~~v~~l~~~~~~~~~-~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~~ 363 (819)
...-|-++++-|......+.+ ..|.+-+|+|||+.+.+++..+ .+|+|||||+ ....+|.+++..|.++-.+..
T Consensus 9 p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A~l~~~~----~rp~LvVt~~~~~A~~l~~dL~~~l~~~~v~~ 84 (408)
T d1c4oa1 9 PKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL----GRPALVLAPNKILAAQLAAEFRELFPENAVEY 84 (408)
T ss_dssp CCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHHHHh----CCCEEEEeCCHHHHHHHHHHHHHhcCccceee
Confidence 344677788877777777765 5788999999998877776654 3499999997 666889999999998766665
Q ss_pred Ee
Q 003450 364 YV 365 (819)
Q Consensus 364 ~~ 365 (819)
+.
T Consensus 85 fp 86 (408)
T d1c4oa1 85 FI 86 (408)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 99
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}
Probab=92.79 E-value=0.24 Score=45.63 Aligned_cols=36 Identities=17% Similarity=0.068 Sum_probs=25.2
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P 341 (819)
+-.+|++++|+|||.++.=++.++...+. ++.+|+-
T Consensus 7 ~vi~lvGptGvGKTTTiaKLA~~~~~~g~-kV~lit~ 42 (207)
T d1okkd2 7 RVVLVVGVNGVGKTTTIAKLGRYYQNLGK-KVMFCAG 42 (207)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTC-CEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCC-cEEEEEe
Confidence 34567999999999887777666665554 4444444
No 100
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=92.71 E-value=0.13 Score=48.48 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.4
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHh
Q 003450 305 THVILADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~ 329 (819)
.+.||.++.|+|||..+-+++..+.
T Consensus 34 ~~lll~Gp~G~GKTtl~~~i~~~l~ 58 (237)
T d1sxjd2 34 PHMLFYGPPGTGKTSTILALTKELY 58 (237)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCChHHHHHHHHHHHc
Confidence 3589999999999999988887763
No 101
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}
Probab=92.47 E-value=0.47 Score=40.46 Aligned_cols=36 Identities=28% Similarity=0.128 Sum_probs=26.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCc
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ 343 (819)
-++.++|.+|||..-+-.+..+... .++++++-|..
T Consensus 5 ~~i~GpMfsGKTteLi~~~~~~~~~-~~kv~~ikp~~ 40 (139)
T d2b8ta1 5 EFITGPMFAGKTAELIRRLHRLEYA-DVKYLVFKPKI 40 (139)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEEECC
T ss_pred EEEEccccCHHHHHHHHHHHHHHHC-CCcEEEEEEcc
Confidence 3678999999998877776555333 34788888864
No 102
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}
Probab=92.39 E-value=0.21 Score=46.15 Aligned_cols=49 Identities=12% Similarity=0.162 Sum_probs=29.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHc
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~ 356 (819)
.+|.+++|+|||.++.=++..+...+. ++.+|+--.--..=.++++.|.
T Consensus 12 i~lvGptGvGKTTTiAKLA~~~~~~g~-kV~lit~Dt~R~gA~eQL~~~a 60 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLARQFEQQGK-SVMLAAGDTFRAAAVEQLQVWG 60 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTC-CEEEECCCTTCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-cEEEEecccccccchhhhhhhh
Confidence 457999999999887777666665544 5555554332222344444444
No 103
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.00 E-value=0.32 Score=41.23 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=27.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCc
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ 343 (819)
-++.++|.+|||...+..+..+...+ ++++++-|..
T Consensus 5 ~li~GpMfsGKTt~Li~~~~~~~~~g-~~v~~ikp~~ 40 (133)
T d1xbta1 5 QVILGPMFSGKSTELMRRVRRFQIAQ-YKCLVIKYAK 40 (133)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTT-CCEEEEEETT
T ss_pred EEEEecccCHHHHHHHHHHHHHHHcC-CcEEEEeccc
Confidence 46889999999988877776654433 4789998864
No 104
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=91.92 E-value=0.68 Score=43.76 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.2
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l 328 (819)
++.+|.++.|+|||..+-+++..+
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999998888777654
No 105
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}
Probab=90.99 E-value=0.3 Score=45.14 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=26.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCc
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ 343 (819)
.++.+++|+|||.++.=++.++...+.+..||-+...
T Consensus 14 i~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~ 50 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 50 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeeccc
Confidence 5679999999998877676666655554555555553
No 106
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}
Probab=90.94 E-value=0.0072 Score=43.99 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=33.9
Q ss_pred ccccccccccCCCC---eE--ecCCCCccccccCcCCCCCCCCCCCcccCccCCCC
Q 003450 49 AKDDSCQACGESEN---LM--SCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (819)
Q Consensus 49 ~~~~~C~~c~~~~~---~~--~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~ 99 (819)
++..+|.+|.+..+ +. .|.+|...||..|+..=+.. .+.+.||.|+...
T Consensus 4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~--~~~~~CP~Cr~~~ 57 (60)
T d1vyxa_ 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI--SRNTACQICGVVY 57 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH--HTCSBCTTTCCBC
T ss_pred CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhh--CCCCCCcccCCee
Confidence 45577999985432 23 46788899999999653322 3567899998643
No 107
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}
Probab=90.89 E-value=0.17 Score=43.47 Aligned_cols=36 Identities=17% Similarity=0.031 Sum_probs=26.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCc
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ 343 (819)
-++.++|.+|||...+..+..+... ..++|++-|..
T Consensus 10 ~lI~GpMfSGKTteLi~~~~~~~~~-g~~vl~i~~~~ 45 (141)
T d1xx6a1 10 EVIVGPMYSGKSEELIRRIRRAKIA-KQKIQVFKPEI 45 (141)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEEC-
T ss_pred EEEEeccccHHHHHHHHHHHHhhhc-CCcEEEEEecc
Confidence 4689999999998888777655433 34788888864
No 108
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Probab=90.25 E-value=0.73 Score=42.49 Aligned_cols=27 Identities=19% Similarity=0.060 Sum_probs=21.8
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 003450 306 HVILADEMGLGKTIQSIAFLASLFGER 332 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l~~~~ 332 (819)
..+|.++.|+|||.-+-|+...+...+
T Consensus 38 ~l~l~G~~G~GKTHLl~A~~~~~~~~~ 64 (213)
T d1l8qa2 38 PIFIYGSVGTGKTHLLQAAGNEAKKRG 64 (213)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTT
T ss_pred cEEEECCCCCcHHHHHHHHHHHhccCc
Confidence 378999999999988888877775543
No 109
>d2fmma1 b.34.13.2 (A:108-175) Heterochromatin protein 1, HP1 {Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}
Probab=90.20 E-value=0.021 Score=42.17 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=23.5
Q ss_pred chhhhHhhhhcCCcceeeEeeecccc
Q 003450 192 TTVDRILACRGEDDEKEYLVKYKELS 217 (819)
Q Consensus 192 ~~~eril~~~~~~~~~~~lvKw~~l~ 217 (819)
+++|+|++..+.+|+..|||||+|.+
T Consensus 10 l~~ekIig~t~~~gel~flvkwk~~d 35 (68)
T d2fmma1 10 LEPERIIGATDSSGELMFLMKWKNSD 35 (68)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTCS
T ss_pred CCccEEEEeEccCCeEEEEEEECCCC
Confidence 67899999988889999999999973
No 110
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=90.04 E-value=0.24 Score=54.23 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=51.5
Q ss_pred CCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCC---CCceEEEecC-cchHHHHHHHHHHc----
Q 003450 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPL-STLRNWEREFATWA---- 356 (819)
Q Consensus 285 ~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~---~~~~LIv~P~-~ll~qW~~e~~~~~---- 356 (819)
.|.+-|.++|. ...+++++.+..|+|||.+++.-+.+++..+ +..+|+|+.+ .....-.+-+....
T Consensus 11 ~L~~eQ~~~v~------~~~~~~lV~A~AGSGKT~~lv~ri~~ll~~~~~~p~~Il~ltft~~Aa~ei~~Ri~~~l~~~~ 84 (623)
T g1qhh.1 11 HLNKEQQEAVR------TTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAA 84 (623)
T ss_dssp TSCHHHHHHHH------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGG
T ss_pred hcCHHHHHHHc------CCCCCEEEEEeCchHHHHHHHHHHHHHHHcCCCCcccEEEEeccHHHHHHHHHHHHHhccccc
Confidence 58999999986 4567788888999999999999888876542 2479999985 33333333343322
Q ss_pred CCCeEEEEec
Q 003450 357 PQMNVVMYVG 366 (819)
Q Consensus 357 p~~~v~~~~g 366 (819)
.++.+..+|+
T Consensus 85 ~~~~v~TfHs 94 (623)
T g1qhh.1 85 EDVWISTFHS 94 (623)
T ss_dssp TTSEEEEHHH
T ss_pred CCCEEEcHHH
Confidence 2344555543
No 111
>d3deoa1 b.34.13.2 (A:85-128) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=89.34 E-value=0.034 Score=35.38 Aligned_cols=36 Identities=28% Similarity=0.506 Sum_probs=27.3
Q ss_pred hhhhHhhhhc-CCcceeeEeeecccccccccccCCCCcc
Q 003450 193 TVDRILACRG-EDDEKEYLVKYKELSYDECYWEYESDIS 230 (819)
Q Consensus 193 ~~eril~~~~-~~~~~~~lvKw~~l~y~~~TWE~~~~~~ 230 (819)
+|.||++.|. .+|..|||+-|++- -.-+|.+...+.
T Consensus 1 ev~kIi~sR~~~dgg~eYliEWkD~--h~pSWvP~~~IA 37 (44)
T d3deoa1 1 EVNKIIGSRTAGEGAMEYLIEWKDG--HSPSWVPSSYIA 37 (44)
T ss_dssp CEEEEEEEEEETTTEEEEEEEETTC--CCCEEEEGGGSC
T ss_pred CcchhcceeecCCCceeEEEEeccC--CCCCcCCHHHHH
Confidence 3678888884 47789999999974 356898877654
No 112
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=88.50 E-value=0.25 Score=50.28 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=24.0
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
....|.||.++.|.|||..+-.++..+...
T Consensus 41 ~~k~n~llvG~~GvGKtaiv~~la~~i~~~ 70 (387)
T d1qvra2 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKG 70 (387)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCeEECCCCCCHHHHHHHHHHHHHhC
Confidence 456689999999999998887777766554
No 113
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=88.44 E-value=0.3 Score=46.72 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=31.9
Q ss_pred chhHHHHHHHHHHhh-c----CCCceEEEcCCCCcHHHHHHHHHHHHhcCC
Q 003450 287 HPYQLEGLNFLRFSW-S----KQTHVILADEMGLGKTIQSIAFLASLFGER 332 (819)
Q Consensus 287 ~~~Q~~~v~~l~~~~-~----~~~~~iLade~GlGKT~~~i~~l~~l~~~~ 332 (819)
|+.|++.+.-++..+ . ...+.+|.+++|+|||..+-+++..+....
T Consensus 21 Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~ 71 (276)
T d1fnna2 21 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT 71 (276)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhccc
Confidence 567777654443332 2 235789999999999998888777775443
No 114
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=88.02 E-value=0.15 Score=35.89 Aligned_cols=42 Identities=26% Similarity=0.492 Sum_probs=31.4
Q ss_pred cccccccCC----CCeEecCCCCccccccCcCCCCCCCCCCCcccCccCC
Q 003450 52 DSCQACGES----ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 52 ~~C~~c~~~----~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
..|.+|.+. +.++.+..|+-.||..|+..=+..- =.||.|+.
T Consensus 6 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~----~~CP~CR~ 51 (55)
T d1iyma_ 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH----STCPLCRL 51 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC----CSCSSSCC
T ss_pred CCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhC----CcCCCCCC
Confidence 349999743 3466778899999999998766542 25999985
No 115
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=87.84 E-value=0.17 Score=48.59 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=30.1
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWE 349 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~ 349 (819)
..++.+|.++.|+|||..+=+++..+ ..+++.+.+..+...|.
T Consensus 37 ~~~giLL~GppGtGKT~l~~ala~~~----~~~~~~i~~~~l~~~~~ 79 (258)
T d1e32a2 37 PPRGILLYGPPGTGKTLIARAVANET----GAFFFLINGPEIMSKLA 79 (258)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHT----TCEEEEECHHHHTTSCT
T ss_pred CCceeEEecCCCCCchHHHHHHHHHh----CCeEEEEEchhhccccc
Confidence 35689999999999998776665543 33777777665554443
No 116
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=87.10 E-value=0.85 Score=41.83 Aligned_cols=39 Identities=18% Similarity=0.095 Sum_probs=22.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcch
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll 345 (819)
.+|.+++|+|||.++.=++..+...+.+..||-+-..-.
T Consensus 15 i~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ 53 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRP 53 (211)
T ss_dssp EEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeecccc
Confidence 457899999999887767666665554455555554433
No 117
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}
Probab=86.74 E-value=0.31 Score=43.39 Aligned_cols=38 Identities=21% Similarity=0.134 Sum_probs=30.2
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~ 342 (819)
++++|.++.|+|||..+-.++..+...+..-..+.|+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~ 39 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEE 39 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 57899999999999999999988877665555555554
No 118
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=86.68 E-value=1.3 Score=40.54 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=31.4
Q ss_pred Cce-EEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHc
Q 003450 305 THV-ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (819)
Q Consensus 305 ~~~-iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~ 356 (819)
+++ +|.+++|+|||.++.=++.++...+. ++++|+--.--..=.++++.|+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~-kV~lit~Dt~R~gA~eQL~~~a 61 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGR-RPLLVAADTQRPAAREQLRLLG 61 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTC-CEEEEECCSSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCC-cEEEEecccccchHHHHHHHHH
Confidence 444 56999999999888777766665544 5555555433333334444443
No 119
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}
Probab=82.16 E-value=1.3 Score=42.37 Aligned_cols=57 Identities=5% Similarity=-0.058 Sum_probs=41.0
Q ss_pred HhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHH
Q 003450 299 FSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (819)
Q Consensus 299 ~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~ 355 (819)
..+..|.=.+|++.+|.|||..++.++..+......+++++...-...+....+...
T Consensus 30 ~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E~~~~~~~~r~~~~ 86 (277)
T d1cr2a_ 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGL 86 (277)
T ss_dssp CSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeeccchhhHHhHHHHH
Confidence 345667778999999999998888877765434445899999876666655544433
No 120
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=81.53 E-value=1 Score=42.04 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=20.9
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
..+.||.+++|+|||..|-+++..+
T Consensus 35 ~~~~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 35 LEHLLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999998888777654
No 121
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=80.89 E-value=0.32 Score=48.07 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=22.6
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
..++.+|.+++|+|||..|=+++..+
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhcc
Confidence 56889999999999999998877765
No 122
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}
Probab=80.44 E-value=1.6 Score=40.69 Aligned_cols=55 Identities=16% Similarity=0.300 Sum_probs=41.6
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHc
Q 003450 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (819)
Q Consensus 301 ~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~ 356 (819)
+..+.-.+|.+++|+|||..++.++......+ .++++++-......+.+.+..+.
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~-~~~~~is~e~~~~~~~~~~~~~~ 77 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENACANK-ERAILFAYEESRAQLLRNAYSWG 77 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTT-CCEEEEESSSCHHHHHHHHHTTS
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhc-cccceeeccCCHHHHHHHHHHcC
Confidence 44566789999999999999999998876544 46777777666666766666553
No 123
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=78.74 E-value=1.4 Score=40.97 Aligned_cols=25 Identities=40% Similarity=0.509 Sum_probs=21.0
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
..+.||.+++|+|||..|-+++.++
T Consensus 35 ~~~~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 35 LDHVLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHhcc
Confidence 3579999999999999887777665
No 124
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}
Probab=78.73 E-value=1.2 Score=45.31 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=33.5
Q ss_pred CCCchhHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 284 ~~L~~~Q~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
.-+.+.|.+.+..+. ...++-+|++++||+|||.+..+++.++..
T Consensus 140 LG~~~~~~~~l~~l~--~~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 140 LGMTAHNHDNFRRLI--KRPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SCCCHHHHHHHHHHH--TSSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hcccHHHHHHHHHHH--hhhhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence 347788888776552 234455678999999999999998888744
No 125
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}
Probab=78.03 E-value=1 Score=41.60 Aligned_cols=54 Identities=22% Similarity=0.188 Sum_probs=38.6
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHH
Q 003450 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (819)
Q Consensus 301 ~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~ 354 (819)
+..|.-.+|++++|+|||..++.++......+..+++++............+..
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~~~~~~~~~~~ 76 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARS 76 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGG
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHH
Confidence 456677899999999999998887766544444578888876655554444443
No 126
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}
Probab=77.43 E-value=0.94 Score=44.66 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHH
Q 003450 291 LEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLAS 327 (819)
Q Consensus 291 ~~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~ 327 (819)
.+.+.+|......+++.+++++||+|||...-+++..
T Consensus 153 ~~~~~~l~~~v~~~~nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 153 EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCCCEEEEeeccccchHHHHHHhhh
Confidence 4455666667778899999999999999776555543
No 127
>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Probab=76.68 E-value=0.81 Score=28.77 Aligned_cols=28 Identities=11% Similarity=-0.077 Sum_probs=22.4
Q ss_pred EecCCCCccccccCcCCCCCCCCCCCcccCccCC
Q 003450 64 MSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 64 ~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
..|..|++.||.. ...|.-++.|..|-.
T Consensus 3 ~vc~~cG~~Yh~~------~~pPk~~g~CD~cg~ 30 (37)
T d2ak3a2 3 WIHPGSGRVYNIE------FNPPKTMGIDDLTGE 30 (37)
T ss_dssp EEETTTTEEEETT------TBCCSSTTBCTTTCC
T ss_pred eeeCCcCChhhhc------cCCccccCCccCCCC
Confidence 4689999999965 445777889999985
No 128
>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.20 E-value=0.15 Score=39.09 Aligned_cols=24 Identities=29% Similarity=0.674 Sum_probs=22.1
Q ss_pred hhhhhhccCCCcccccccChHHHH
Q 003450 131 KQYLVKWKGLSYLHCTWVPEKEFL 154 (819)
Q Consensus 131 ~eylVKw~~~s~~h~~W~~~~~l~ 154 (819)
.+|||.|+|++-.+++|+|++.|.
T Consensus 35 ~~Y~VHy~GWn~~~DeWv~~~ril 58 (83)
T d2f5ka1 35 VKYFIHYSGWNKNWDEWVPESRVL 58 (83)
T ss_dssp EEEEEEETTSCGGGCEEEEGGGEE
T ss_pred eEEEEEecccCCccccccChhhcc
Confidence 689999999999999999998764
No 129
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}
Probab=74.56 E-value=1.2 Score=42.30 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=30.7
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~ 346 (819)
..++.+|.+++|+|||..+=+++..+ ..|++.|-+..++.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~----~~~~~~i~~~~l~~ 83 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEA----KVPFFTISGSDFVE 83 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH----TCCEEEECSCSSTT
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHc----CCCEEEEEhHHhhh
Confidence 45778999999999999987777665 23677777777664
No 130
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=74.44 E-value=0.69 Score=38.50 Aligned_cols=47 Identities=28% Similarity=0.693 Sum_probs=35.4
Q ss_pred ccccccccCC-C----CeEecCCCCccccccCcCCCCCCCCCCCcccCccCC
Q 003450 51 DDSCQACGES-E----NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 51 ~~~C~~c~~~-~----~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
...|..|+.. + .-..|-.|.+.++..|-.......+...|.|..|..
T Consensus 48 ~~~C~~C~~~f~~~~~~~~~C~~C~~~~C~~C~~~~~~~~~~~~w~C~~C~k 99 (124)
T d1zbdb_ 48 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 99 (124)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCcCcccCCcccCCCCCCCcCccCCcccccCCCCCccCCCCCCCEECccCcc
Confidence 4569999864 2 246799999999999975544444556799999985
No 131
>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}
Probab=74.27 E-value=0.84 Score=28.32 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=22.2
Q ss_pred EecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 64 MSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 64 ~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
..|..|.+.||..-. .|.-++.|..|-..
T Consensus 3 r~c~~cG~~Yh~~~~------PPk~~g~CD~cg~~ 31 (35)
T d1e4va2 3 RVHAPSGRVYHVKFN------PPKVEGKDDVTGEE 31 (35)
T ss_dssp EEETTTTEEEETTTB------CCSSTTBCTTTCCB
T ss_pred cCCcCcCChhhhccC------ccccCCcccCCCCE
Confidence 358899999997644 56677789999753
No 132
>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=74.20 E-value=0.91 Score=28.16 Aligned_cols=28 Identities=29% Similarity=0.668 Sum_probs=21.6
Q ss_pred EecCCCCccccccCcCCCCCCCCCCCcccCccCC
Q 003450 64 MSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 64 ~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
..|..|.+.||..- ..|.-+..|..|-.
T Consensus 3 r~C~~CG~~Yh~~~------~pPk~~g~CD~cG~ 30 (35)
T d1zina2 3 RICRNCGATYHLIF------HPPAKPGVCDKCGG 30 (35)
T ss_dssp EEETTTCCEEETTT------BCCSSTTBCTTTCC
T ss_pred cCCcCcCchhcccc------CCCCCCCcCCCCCC
Confidence 46899999999653 34666778999975
No 133
>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}
Probab=73.08 E-value=1 Score=27.87 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=22.0
Q ss_pred EecCCCCccccccCcCCCCCCCCCCCcccCccCC
Q 003450 64 MSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 64 ~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
..|..|.+.||.. ...|.-++.|..|-.
T Consensus 3 ~~C~~CG~~Yh~~------~~pPk~~g~CD~cg~ 30 (35)
T d1s3ga2 3 RICKVCGTSYHLL------FNPPQVEGKCDKDGG 30 (35)
T ss_dssp EEETTTCCEEETT------TBCCSBTTBCTTTCC
T ss_pred cCCcCcCchhccc------cCCCCCCCccCCCCC
Confidence 4689999999975 335677788999975
No 134
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}
Probab=72.39 E-value=1.2 Score=42.37 Aligned_cols=45 Identities=13% Similarity=-0.000 Sum_probs=29.8
Q ss_pred CchhHHHHHHH-HHHhhcCCCc-------eEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 286 LHPYQLEGLNF-LRFSWSKQTH-------VILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 286 L~~~Q~~~v~~-l~~~~~~~~~-------~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
=|+-|++.+.- +......+.+ .+|.+++|+|||..+-+++..+..
T Consensus 20 ~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~ 72 (287)
T d1w5sa2 20 VRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 72 (287)
T ss_dssp SSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHh
Confidence 35778887644 3333333221 245799999999999888887743
No 135
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}
Probab=72.16 E-value=1.9 Score=41.01 Aligned_cols=56 Identities=14% Similarity=0.177 Sum_probs=41.3
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHHHhcC---------CCCceEEEecCcchHHHHHHHHHHc
Q 003450 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGE---------RISPHLVVAPLSTLRNWEREFATWA 356 (819)
Q Consensus 301 ~~~~~~~iLade~GlGKT~~~i~~l~~l~~~---------~~~~~LIv~P~~ll~qW~~e~~~~~ 356 (819)
+..+.-++|+++.|+|||..++.++..+... ..+++|++.-.....++...+..+.
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~~~~~~~Rl~~~~ 90 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALG 90 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccchHHHHHHHHHHHh
Confidence 3456778999999999999988887776432 1237888887776777777776654
No 136
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}
Probab=71.91 E-value=1.2 Score=38.28 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=20.1
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l 328 (819)
+..+|.+.+|+|||.+|-.++..|
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999998887777665
No 137
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}
Probab=71.86 E-value=0.9 Score=43.23 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=24.6
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P 341 (819)
.+.||.+++|+|||..|-+++..+. .++++|-.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~----~~~~~i~~ 65 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ----GNVIVIDN 65 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT----TCCEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh----cceEEEec
Confidence 4688999999999998877776652 35565544
No 138
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}
Probab=71.77 E-value=0.95 Score=44.36 Aligned_cols=44 Identities=18% Similarity=0.126 Sum_probs=30.9
Q ss_pred CCceE-EEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHH
Q 003450 304 QTHVI-LADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWE 349 (819)
Q Consensus 304 ~~~~i-Lade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~ 349 (819)
.+|.+ +.+++|+|||..|=+++..+-.. -+++.|.+..++..|.
T Consensus 122 ~~g~~l~~G~pG~GKT~la~ala~~~~~~--~~~~~~~~~~~~~~~~ 166 (321)
T d1w44a_ 122 ASGMVIVTGKGNSGKTPLVHALGEALGGK--DKYATVRFGEPLSGYN 166 (321)
T ss_dssp ESEEEEEECSSSSCHHHHHHHHHHHHHTT--SCCEEEEBSCSSTTCB
T ss_pred CCceEEEECCCCccHHHHHHHHHHHhcCC--CCeEEEEhhHhhhccc
Confidence 44545 47999999999988888776322 2677777777775433
No 139
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}
Probab=71.39 E-value=0.93 Score=34.22 Aligned_cols=55 Identities=18% Similarity=0.452 Sum_probs=36.6
Q ss_pred cccccccccccCCCCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCCCcccccc
Q 003450 48 DAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKI 105 (819)
Q Consensus 48 ~~~~~~C~~c~~~~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~~~~~~i 105 (819)
+.....|.+|.+...-..-..|+-.||..|+..-+.. +.=.||.|+......+.+
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~---~~~~CP~Cr~~i~~~~~i 74 (79)
T d1fbva4 20 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES---EGQGCPFCRCEIKGTEPI 74 (79)
T ss_dssp SCCTTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHT---TCCSCTTTCCCCCCCCCS
T ss_pred CCCCCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHH---CcCcCCCCCcCccCCcee
Confidence 3445679999976554444569999999998654322 222599999766554444
No 140
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=71.36 E-value=1.5 Score=45.18 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=24.3
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEE
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv 339 (819)
..|.||.++||+|||..|=.++..+ .-||.++
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk~l----~VPFv~~ 80 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAKLA----NAPFIKV 80 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT----TCCEEEE
T ss_pred cccEEEECCCCCCHHHHHHHHHHHh----CCCEEEe
Confidence 5699999999999999887766544 1266655
No 141
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}
Probab=70.84 E-value=0.99 Score=42.61 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=31.4
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWE 349 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~ 349 (819)
.++.||.++.|+|||..+=+++..+ ..+++.|-+..++..|.
T Consensus 42 ~~giLl~GppGtGKT~la~aia~~~----~~~~~~i~~~~l~~~~~ 83 (247)
T d1ixza_ 42 PKGVLLVGPPGVGKTHLARAVAGEA----RVPFITASGSDFVEMFV 83 (247)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHT----TCCEEEEEHHHHHHSCT
T ss_pred CceEEEecCCCCChhHHHHHHHHHc----CCCEEEEEhHHhhhccc
Confidence 4578999999999999988877654 23777777766665443
No 142
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=70.50 E-value=6.4 Score=35.45 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=68.7
Q ss_pred CCceEEEecC-cchHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCccccccccCCccccccccccccccEEE
Q 003450 333 ISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLL 411 (819)
Q Consensus 333 ~~~~LIv~P~-~ll~qW~~e~~~~~p~~~v~~~~g~~~~r~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi 411 (819)
.+.+.+|||. .-+......+.+.+|++++.+.||.......-....-| ...+++|+|
T Consensus 31 GgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F----------------------~~g~~~ILv 88 (211)
T d2eyqa5 31 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDF----------------------HHQRFNVLV 88 (211)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHH----------------------HTTSCCEEE
T ss_pred CCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHH----------------------HcCCcceEE
Confidence 3589999995 67788899999999999999999987665432222111 235788999
Q ss_pred chhhHHhhcccccCCccceEEEecccccccCcccHHHHHHHhc----ccCcEEEEeCCC
Q 003450 412 TSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQY----STRHRVLLTGTP 466 (819)
Q Consensus 412 ~ty~~l~~~~~~l~~~~~~~lIvDEaH~~kn~~s~~~~~l~~l----~~~~~llLTgTP 466 (819)
+|-=.= .- +.--+-.++||..|+++. -+++++.--+. ...+.++++..+
T Consensus 89 ~TtvIE-vG---iDvpnA~~iiI~~a~rfG--LaQLhQLRGRVGR~~~~s~c~l~~~~~ 141 (211)
T d2eyqa5 89 CTTIIE-TG---IDIPTANTIIIERADHFG--LAQLHQLRGRVGRSHHQAYAWLLTPHP 141 (211)
T ss_dssp ESSTTG-GG---SCCTTEEEEEETTTTSSC--HHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred Eehhhh-hc---cCCCCCcEEEEecchhcc--ccccccccceeeecCccceEEEEecCC
Confidence 884221 11 111244689999999983 23444433333 234678887554
No 143
>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=70.05 E-value=1.4 Score=27.82 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=21.7
Q ss_pred EecCCCCccccccCcCCCCCCCCCCCcccCccCC
Q 003450 64 MSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 64 ~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
..|..|++.||..-- .|.-.+.|..|-.
T Consensus 3 r~C~~cG~~Yh~~~~------ppk~~g~CD~cg~ 30 (38)
T d1akya2 3 LIHPASGRSYHKIFN------PPKEDMKDDVTGE 30 (38)
T ss_dssp EECTTTCCEEETTTB------CCSSTTBCTTTCC
T ss_pred cCCcCccchhhhhcc------CcCcCCccCCCCC
Confidence 468999999996544 5667778999975
No 144
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=68.81 E-value=5.9 Score=36.87 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=32.1
Q ss_pred HHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcch-HHHHHHH
Q 003450 295 NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREF 352 (819)
Q Consensus 295 ~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll-~qW~~e~ 352 (819)
+.+......+..++|.+|+|+|||..|-++-. .-.....+++.+....+- .++..++
T Consensus 14 ~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~-~s~~~~~~~~~~~~~~~~~~~~~~~l 71 (247)
T d1ny5a2 14 EKIKKISCAECPVLITGESGVGKEVVARLIHK-LSDRSKEPFVALNVASIPRDIFEAEL 71 (247)
T ss_dssp HHHHHHTTCCSCEEEECSTTSSHHHHHHHHHH-HSTTTTSCEEEEETTTSCHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCCCcCHHHHHHHHHH-hcCCcccccccchhhhhhhcccHHHh
Confidence 33444446677899999999999976644432 212222355554444433 3444443
No 145
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}
Probab=67.38 E-value=1.7 Score=37.64 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=19.7
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l 328 (819)
.+.+|.+.+|+|||.++-.+...+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999998887776655
No 146
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=67.30 E-value=3.9 Score=37.86 Aligned_cols=38 Identities=21% Similarity=0.082 Sum_probs=28.7
Q ss_pred HHHHHHHh-hcCCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 293 GLNFLRFS-WSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 293 ~v~~l~~~-~~~~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
+++.|+.. +..|.-++|++++|+|||..++-++.....
T Consensus 24 ~LD~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~~~~~~ 62 (254)
T d1pzna2 24 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQL 62 (254)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred HHHHhhcCCccCCEEEEEEcCCCCCHHHHHHHHHHHhhc
Confidence 55555443 445566899999999999999999887653
No 147
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=67.13 E-value=0.66 Score=28.39 Aligned_cols=25 Identities=24% Similarity=0.716 Sum_probs=18.2
Q ss_pred cccccccCCCC--eEecCCCCccccccCc
Q 003450 52 DSCQACGESEN--LMSCDTCTYAYHAKCL 78 (819)
Q Consensus 52 ~~C~~c~~~~~--~~~C~~C~~~~H~~c~ 78 (819)
..|.+|+..-. +| -..+++||..|.
T Consensus 9 EkC~~C~~~I~driL--rA~Gk~yHP~CF 35 (35)
T d2dloa1 9 EKCATCSQPILDRIL--RAMGKAYHPGCF 35 (35)
T ss_dssp CBCTTTCCBCCSCCE--EETTEEECTTTC
T ss_pred HHHHHhchHHHHHHH--HHhCCCCCCCCC
Confidence 35999987643 44 368899999983
No 148
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=66.35 E-value=1.6 Score=41.07 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=20.1
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l 328 (819)
+++||.+++|+|||..+-+++..+
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhcc
Confidence 468999999999999887776654
No 149
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}
Probab=65.12 E-value=1.8 Score=37.57 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=19.4
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
+-+.+|.+.+|+|||.++=.+...+
T Consensus 5 ~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 4468999999999998876655543
No 150
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=64.80 E-value=0.49 Score=38.81 Aligned_cols=36 Identities=28% Similarity=0.589 Sum_probs=24.6
Q ss_pred EecCCCCccccccCcCCCCCCCC-CCCcccCccCCCC
Q 003450 64 MSCDTCTYAYHAKCLVPPLKAPP-SGSWRCPECVSPL 99 (819)
Q Consensus 64 ~~C~~C~~~~H~~c~~p~~~~~~-~~~w~C~~c~~~~ 99 (819)
+....|.-.||..|+..-+.... .+.-.||.|+...
T Consensus 56 ~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~ 92 (114)
T d1v87a_ 56 GRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp EEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred eEECCCCChhhHHHHHHHHHhcCcCCCCccccccchh
Confidence 44457999999999965443222 3445799998643
No 151
>d1weqa_ g.50.1.2 (A:) PHD finger protein 7 (NYD-SP6) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=63.71 E-value=3 Score=31.54 Aligned_cols=34 Identities=35% Similarity=0.868 Sum_probs=26.4
Q ss_pred eEecCCCC-ccccccCcCCCCCCCCCCCcccCccCCCC
Q 003450 63 LMSCDTCT-YAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (819)
Q Consensus 63 ~~~C~~C~-~~~H~~c~~p~~~~~~~~~w~C~~c~~~~ 99 (819)
|+.|..|+ .+-|..|- .|.. +..+|.|..|....
T Consensus 46 ii~C~~CGS~gtH~~C~--~l~~-~~~~y~C~~C~~v~ 80 (85)
T d1weqa_ 46 LILCATCGSHGTHRDCS--SLRP-NSKKWECNECLPAS 80 (85)
T ss_dssp CEECSSSCCCEECSGGG--TCCT-TCSCCCCTTTSCCS
T ss_pred EEeecccCCccchhhhc--CCcC-CCCCEECCcCcchh
Confidence 99999997 66999994 3332 35689999998643
No 152
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}
Probab=63.47 E-value=2.4 Score=36.66 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.3
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l 328 (819)
++.+|.+.+|+|||.++-.++..+
T Consensus 1 k~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 1 KNIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999888777776
No 153
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=63.35 E-value=0.89 Score=42.49 Aligned_cols=39 Identities=21% Similarity=0.070 Sum_probs=28.8
Q ss_pred HHHHHHHh-hcCCCceEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 293 GLNFLRFS-WSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 293 ~v~~l~~~-~~~~~~~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
+++.+... +..+.-++|++++|+|||..++.++......
T Consensus 22 ~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~~~~ 61 (258)
T d2i1qa2 22 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNP 61 (258)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCG
T ss_pred HHHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 45544332 3456678899999999999999999887543
No 154
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Probab=62.37 E-value=2.4 Score=36.89 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=20.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 306 HVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
-.+|.+.||+|||..|-++...|..
T Consensus 8 ~I~l~G~~GsGKTTia~~La~~L~~ 32 (183)
T d1m8pa3 8 TIFLTGYMNSGKDAIARALQVTLNQ 32 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3558899999999998887777643
No 155
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=62.28 E-value=2.3 Score=37.48 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=19.8
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHH
Q 003450 306 HVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l 328 (819)
+.+|.+++|+|||.+|-.+...+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46889999999999998877766
No 156
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=62.10 E-value=4 Score=35.56 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=23.8
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEE
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv 339 (819)
+-.++.+.+|+|||.++-.+...+...+. +++++
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~-~~~~~ 35 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGV-NYKMV 35 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTC-CCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCC-CeEEE
Confidence 34678999999999888777776655543 33433
No 157
>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}
Probab=62.10 E-value=2.1 Score=29.21 Aligned_cols=34 Identities=32% Similarity=0.782 Sum_probs=20.0
Q ss_pred ecCCCCccccccCcCC--------CCCCCCCCCcccCccCCCC
Q 003450 65 SCDTCTYAYHAKCLVP--------PLKAPPSGSWRCPECVSPL 99 (819)
Q Consensus 65 ~C~~C~~~~H~~c~~p--------~~~~~~~~~w~C~~c~~~~ 99 (819)
.|..|+..|...=-+| +..++| .+|.||.|....
T Consensus 5 ~C~~CgyiYd~~~Gd~~~gi~pGT~F~~LP-~dw~CP~C~a~K 46 (53)
T d1iroa_ 5 TCTVCGYIYNPEDGDPDNGVNPGTDFKDIP-DDWVCPLCGVGK 46 (53)
T ss_dssp EETTTCCEECTTTCBGGGTBCTTCCGGGSC-TTCBCTTTCCBG
T ss_pred EcCCCCcEECcccCCcccCCCCCCCHHHCC-CCCCCcCCCCcH
Confidence 4666776665443222 123333 679999998653
No 158
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}
Probab=61.93 E-value=2.1 Score=36.98 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=18.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHH
Q 003450 306 HVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l 328 (819)
-.+|.+.+|+|||.+|-.+...+
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 36799999999998876665543
No 159
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.45 E-value=2.7 Score=37.84 Aligned_cols=38 Identities=16% Similarity=0.004 Sum_probs=27.8
Q ss_pred HHHHHHH-hhcCCCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 293 GLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 293 ~v~~l~~-~~~~~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
+++.++. .+..|.-.+|++++|+|||..++.++.....
T Consensus 11 ~LD~ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~~~~~ 49 (242)
T d1n0wa_ 11 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQL 49 (242)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred HHHHhhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4555543 2345666889999999999999888877644
No 160
>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=61.36 E-value=3.2 Score=33.71 Aligned_cols=69 Identities=17% Similarity=0.087 Sum_probs=52.0
Q ss_pred hcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcccCCEEEE
Q 003450 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (819)
Q Consensus 622 ~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~~a~~VI~ 701 (819)
..+.+|||.+......+.|.+.|...|+++..+++-. .|. +.+ + .+.......|.-++..+.+|+
T Consensus 32 ~~~~~Vli~a~s~g~~erl~e~L~~~~i~~~~~~~~~----------~~~--~~~-~--~i~~~~l~~GF~~~~~~l~vI 96 (117)
T d2eyqa2 32 TFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLD----------EAS--DRG-R--YLMIGAAEHGFVDTVRNLALI 96 (117)
T ss_dssp TCCSCCCEEESSHHHHHHHHHHHGGGTCCCEECSSGG----------GCC--TTC-C--EEEECCCCSCEEETTTTEEEE
T ss_pred hCCCeEEEEECCccHHHHHHHHHHHcCCCceEecChh----------hhc--Cce-E--EEEEecCccccccCCCCEEEE
Confidence 3467899999999999999999999999987765532 232 222 2 333466889999999999999
Q ss_pred eCCC
Q 003450 702 YDSD 705 (819)
Q Consensus 702 ~d~~ 705 (819)
-+.+
T Consensus 97 tE~d 100 (117)
T d2eyqa2 97 CESD 100 (117)
T ss_dssp EHHH
T ss_pred EchH
Confidence 7664
No 161
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}
Probab=61.13 E-value=3.2 Score=37.53 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=24.4
Q ss_pred eEEEc-CCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 003450 307 VILAD-EMGLGKTIQSIAFLASLFGERISPHLVVA 340 (819)
Q Consensus 307 ~iLad-e~GlGKT~~~i~~l~~l~~~~~~~~LIv~ 340 (819)
.++++ .+|.|||.+++.++..+.+.+. +++++=
T Consensus 4 ~~i~gt~~GVGKTtvs~~La~aLa~~G~-rVl~id 37 (224)
T d1byia_ 4 YFVTGTDTEVGKTVASCALLQAAKAAGY-RTAGYK 37 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHTTC-CEEEEC
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCC-eEEEEC
Confidence 34444 4699999999999999977764 466653
No 162
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}
Probab=61.04 E-value=3.9 Score=40.62 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=24.2
Q ss_pred HhhcCCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 299 FSWSKQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 299 ~~~~~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
....+.++.++.+++|+|||..|.+++..+
T Consensus 149 ~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 149 YNIPKKRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hCCCCcCeEEEECCCCCCHHHHHHHHHHHc
Confidence 333455678899999999999999888876
No 163
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Probab=60.83 E-value=2.8 Score=37.19 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=20.9
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
+-+.||.+++|+|||.++-.++..+
T Consensus 3 ~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 3 GVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHh
Confidence 5578899999999999997777665
No 164
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.94 E-value=0.85 Score=35.28 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=24.8
Q ss_pred eEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 63 LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 63 ~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
.+.+..|+-.||..|+.+=|..- . .||.|+..
T Consensus 51 ~~~~~~C~H~FH~~Ci~~Wl~~~--~--~CP~CR~~ 82 (88)
T d3dplr1 51 TVAWGVCNHAFHFHCISRWLKTR--Q--VCPLDNRE 82 (88)
T ss_dssp CEEEETTSCEEEHHHHHHHHTTC--S--BCSSSCSB
T ss_pred CeEEccccCcccHHHHHHHHHHC--C--cCCCCCCc
Confidence 46667899999999998766552 2 59999864
No 165
>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=59.02 E-value=2.1 Score=29.19 Aligned_cols=33 Identities=33% Similarity=0.922 Sum_probs=18.9
Q ss_pred ecCCCCccccccCcCC--------CCCCCCCCCcccCccCCC
Q 003450 65 SCDTCTYAYHAKCLVP--------PLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 65 ~C~~C~~~~H~~c~~p--------~~~~~~~~~w~C~~c~~~ 98 (819)
.|..|+..|...=-+| +..++| .+|.||.|...
T Consensus 4 ~C~~CgyiYd~~~Gd~~~gi~pGT~f~dLP-~dw~CP~C~a~ 44 (53)
T d1brfa_ 4 VCKICGYIYDEDAGDPDNGISPGTKFEELP-DDWVCPICGAP 44 (53)
T ss_dssp EETTTCCEEETTTCBGGGTBCTTCCGGGSC-TTCBCTTTCCB
T ss_pred ECCCCCcEECcccCCcccCCCCCCCHHHCC-CCCCCcCCCCc
Confidence 4666666665332111 123343 58999999864
No 166
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}
Probab=58.48 E-value=3.7 Score=29.68 Aligned_cols=36 Identities=33% Similarity=0.663 Sum_probs=20.2
Q ss_pred EecCCCCccccccCcCCC--------CCCCCCCCcccCccCCCCc
Q 003450 64 MSCDTCTYAYHAKCLVPP--------LKAPPSGSWRCPECVSPLN 100 (819)
Q Consensus 64 ~~C~~C~~~~H~~c~~p~--------~~~~~~~~w~C~~c~~~~~ 100 (819)
-.|..|.-.|+..==+|. ..++ ..+|.||.|.....
T Consensus 8 y~C~~CgyiYDp~~GD~~~gI~pGT~F~dL-P~dW~CP~Cga~K~ 51 (70)
T d1dx8a_ 8 YECEACGYIYEPEKGDKFAGIPPGTPFVDL-SDSFMCPACRSPKN 51 (70)
T ss_dssp EEETTTCCEECTTTCCTTTTCCSSCCGGGS-CTTCBCTTTCCBGG
T ss_pred EEcCCCCeEECcccCCcccCCCCCCChHHC-CCCCCCcCCCCcHH
Confidence 345566666654432221 1223 37899999987543
No 167
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.20 E-value=4.9 Score=27.68 Aligned_cols=41 Identities=24% Similarity=0.539 Sum_probs=27.2
Q ss_pred cccccccccCCCC-eEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 50 KDDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 50 ~~~~C~~c~~~~~-~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
....|.+|.+.-. -+. -.|+-.||..|+.- ..-.||.|+..
T Consensus 5 ~~l~C~IC~~~~~~p~~-lpCgH~fC~~Ci~~-------~~~~CP~Cr~~ 46 (56)
T d1bora_ 5 QFLRCQQCQAEAKCPKL-LPCLHTLCSGCLEA-------SGMQCPICQAP 46 (56)
T ss_dssp CCSSCSSSCSSCBCCSC-STTSCCSBTTTCSS-------SSSSCSSCCSS
T ss_pred CCCCCcccCcccCCCEE-ecCCCHHhHHHHHc-------CCCcCcCCCCc
Confidence 3457999986533 112 24888999999842 23369999854
No 168
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}
Probab=57.79 E-value=3.4 Score=36.56 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=19.7
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l 328 (819)
-..+|.+++|+|||.++-.+...+
T Consensus 4 m~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999987666655
No 169
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=57.74 E-value=2.7 Score=28.49 Aligned_cols=34 Identities=29% Similarity=0.811 Sum_probs=20.3
Q ss_pred EecCCCCccccccCcCC--------CCCCCCCCCcccCccCCC
Q 003450 64 MSCDTCTYAYHAKCLVP--------PLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 64 ~~C~~C~~~~H~~c~~p--------~~~~~~~~~w~C~~c~~~ 98 (819)
-.|..|+-.|...=-+| +..++| .+|.||.|...
T Consensus 4 y~C~~CgyiYdp~~Gd~~~gi~pGT~F~~LP-~~w~CP~C~a~ 45 (52)
T d2dsxa1 4 YVCTVCGYEYDPAKGDPDSGIKPGTKFEDLP-DDWACPVCGAS 45 (52)
T ss_dssp EEETTTCCEECTTTCBGGGTBCTTCCGGGSC-TTCBCTTTCCB
T ss_pred EEeCCCCeEECcccCCcccCCCCCCCHHHCC-CCCCCcCCCCc
Confidence 45677776665443222 122333 78999999864
No 170
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=57.52 E-value=3.5 Score=35.58 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=19.7
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l 328 (819)
.+.+|.+.||+|||.++-.+...+
T Consensus 2 p~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Confidence 357888999999999887777666
No 171
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}
Probab=57.24 E-value=3.7 Score=35.63 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=20.1
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l 328 (819)
+..+|.+.+|+|||.++-.++..+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999887777766
No 172
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}
Probab=57.20 E-value=2.5 Score=36.92 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=20.7
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
.++.++.+++|+|||.+|=++...+
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999998887766654
No 173
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}
Probab=57.08 E-value=3.1 Score=35.95 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=19.2
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
.+-.+|.+.+|+|||.+|-++...+
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3456789999999998887666654
No 174
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=56.81 E-value=3.1 Score=38.29 Aligned_cols=36 Identities=17% Similarity=0.063 Sum_probs=26.7
Q ss_pred HHHHHHHh-hcCCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 293 GLNFLRFS-WSKQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 293 ~v~~l~~~-~~~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
+++.+... +..+.-.+|+++.|+|||..++.++...
T Consensus 22 ~LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~~~ 58 (251)
T d1szpa2 22 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTC 58 (251)
T ss_dssp HHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHTTTT
T ss_pred HHHhhhCCCCcCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45555433 4566678999999999999888877654
No 175
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=55.66 E-value=3.5 Score=36.05 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=19.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHH
Q 003450 306 HVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l 328 (819)
+.+|.+++|+|||.++-.++..+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999987766665
No 176
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=55.54 E-value=3.5 Score=34.70 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=15.7
Q ss_pred eEEEcCCCCcHHHHHHHHHH
Q 003450 307 VILADEMGLGKTIQSIAFLA 326 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~ 326 (819)
.||++.+|+|||..|-.++.
T Consensus 5 Iii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999987655443
No 177
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}
Probab=55.27 E-value=3.6 Score=36.15 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=19.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHH
Q 003450 306 HVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l 328 (819)
..+|.+++|+|||.+|-.++..+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999997777765
No 178
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=54.47 E-value=3.8 Score=35.99 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=19.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHH
Q 003450 306 HVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l 328 (819)
+.+|.+++|+|||.++-.++..+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46888999999999997777665
No 179
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}
Probab=54.44 E-value=3.9 Score=35.18 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=19.6
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 003450 305 THVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l 328 (819)
+=.+|.+.+|+|||.++-.+...+
T Consensus 7 ~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 7 HIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999988777665
No 180
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}
Probab=54.32 E-value=3.6 Score=36.01 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=18.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHH
Q 003450 306 HVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l 328 (819)
+.+|.+++|+|||.++-.+...+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999986666554
No 181
>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]}
Probab=54.24 E-value=5.1 Score=27.55 Aligned_cols=33 Identities=24% Similarity=0.597 Sum_probs=19.6
Q ss_pred ecCCCCccccccCcCCC--------CCCCCCCCcccCccCCC
Q 003450 65 SCDTCTYAYHAKCLVPP--------LKAPPSGSWRCPECVSP 98 (819)
Q Consensus 65 ~C~~C~~~~H~~c~~p~--------~~~~~~~~w~C~~c~~~ 98 (819)
.|..|+..|...=-+|. ..++ ..+|.||.|...
T Consensus 6 ~C~~CgyiYdp~~Gd~~~gi~pGT~F~~L-P~dw~CP~C~a~ 46 (56)
T d1s24a_ 6 ICITCGHIYDEALGDEAEGFTPGTRFEDI-PDDWCCPDCGAT 46 (56)
T ss_dssp EETTTTEEEETTSCCTTTTCCSCCCGGGC-CTTCCCSSSCCC
T ss_pred ECCCCCcEECcccCCcccCcCCCCChhhC-CCCCCCcCCCCc
Confidence 56777767764432221 1223 257999999864
No 182
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.01 E-value=8.7 Score=35.22 Aligned_cols=62 Identities=13% Similarity=-0.019 Sum_probs=38.5
Q ss_pred HHHHHHH-hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCC-----CceEEEec-CcchHHHHHHHHH
Q 003450 293 GLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASLFGERI-----SPHLVVAP-LSTLRNWEREFAT 354 (819)
Q Consensus 293 ~v~~l~~-~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~-----~~~LIv~P-~~ll~qW~~e~~~ 354 (819)
+++.++. .+..+.-.+|+++.|+|||..++.++......+. ..++.+.. ......|...+..
T Consensus 25 ~LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (258)
T d1v5wa_ 25 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIAD 93 (258)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHHHHHHHHHh
Confidence 4444432 2344556789999999999999999886543221 13444444 3555667666644
No 183
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}
Probab=53.29 E-value=1.3 Score=32.23 Aligned_cols=44 Identities=25% Similarity=0.548 Sum_probs=31.9
Q ss_pred ccccccccCC-CCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 51 DDSCQACGES-ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 51 ~~~C~~c~~~-~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
.+.|.+|.+. .+...+..|+-.||..|+..-+... =.||.|+..
T Consensus 5 ~d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~----~~CP~CR~~ 49 (68)
T d1chca_ 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN----PTCPLCKVP 49 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS----CSTTTTCCC
T ss_pred CCCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhC----CcCCCCCcc
Confidence 3459999865 3456778899999999996544331 259999864
No 184
>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}
Probab=53.17 E-value=3.7 Score=26.88 Aligned_cols=33 Identities=30% Similarity=0.814 Sum_probs=19.3
Q ss_pred ecCCCCccccccC-cCCCCCCCCCCCcccCccCCC
Q 003450 65 SCDTCTYAYHAKC-LVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 65 ~C~~C~~~~H~~c-~~p~~~~~~~~~w~C~~c~~~ 98 (819)
.|..|+..|...= -.-+..+.| .+|.||.|...
T Consensus 5 ~C~~CgyiYd~~~Gdgt~Fe~LP-~dw~CP~C~a~ 38 (45)
T d6rxna_ 5 VCNVCGYEYDPAEHDNVPFDQLP-DDWCCPVCGVS 38 (45)
T ss_dssp EETTTCCEECGGGGTTCCGGGSC-TTCBCTTTCCB
T ss_pred EeCCCCeEECcccCCCCCHHHCC-CCCCCcCCCCc
Confidence 4666666665321 112334454 58999999864
No 185
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Probab=53.01 E-value=3.5 Score=36.72 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=20.4
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
.-+.+|.+++|+|||.++-.++..+
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHH
Confidence 3468899999999999987777654
No 186
>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}
Probab=52.32 E-value=50 Score=27.72 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=39.1
Q ss_pred ccccCCccceEEEecccccccC----cccHHHHHHHhcccCcEEEEeCCCCCCChhHHHhhhc
Q 003450 421 SASLKPIKWQCMIVDEGHRLKN----KDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH 479 (819)
Q Consensus 421 ~~~l~~~~~~~lIvDEaH~~kn----~~s~~~~~l~~l~~~~~llLTgTP~~n~~~el~~ll~ 479 (819)
...+.+-.+|+||+||.-..-+ +.......+..-+...-+.|||--....+.|+..+..
T Consensus 87 ~~~~~~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~p~~L~e~ADlVT 149 (157)
T d1g5ta_ 87 KRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVS 149 (157)
T ss_dssp HHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEE
T ss_pred HHHhhcCccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhcceee
Confidence 3445667899999999876643 2345666666656667899999865555554444433
No 187
>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}
Probab=52.30 E-value=7.6 Score=31.69 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcCceEEEEecch-------------hHHHHHHHHHhhCCCeEEEEec
Q 003450 611 QLLDKMMVKLKEQGHRVLIYSQFQ-------------HMLDLLEDYLTFKKWQYERIDG 656 (819)
Q Consensus 611 ~~l~~ll~~l~~~g~kvlIFs~~~-------------~~ld~L~~~L~~~g~~~~~l~G 656 (819)
.-..+.+..+.+.|++++||+... ...+...+.|...|++|..+.-
T Consensus 27 ~~~Ie~l~~l~~~G~~Iii~TaR~~~~~~~~~~~~~~~~~~~T~~wL~~~gI~Yd~Li~ 85 (124)
T d1xpja_ 27 LDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVPYDEILV 85 (124)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTTTTTTTCHHHHHHHTHHHHHHHHHHTTCCCSEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCccccCCcHHHHHHHHHHHHHHHHHHcCCCceEEEE
Confidence 445688888989999999999762 3457888999999998866643
No 188
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}
Probab=52.01 E-value=5.2 Score=40.67 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=29.6
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCc
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ 343 (819)
..++.++.+.+|+|||.....++..+...+ .+++|+=|..
T Consensus 49 ~~~H~~I~G~tGsGKT~~l~~li~~~~~~g-~~~iiiD~kg 88 (433)
T d1e9ra_ 49 EPRHLLVNGATGTGKSVLLRELAYTGLLRG-DRMVIVDPNG 88 (433)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTT-CEEEEEEETT
T ss_pred ccceEEEEeCCCCcHHHHHHHHHHHHHhCC-CCEEEEeCCh
Confidence 346789999999999987666666665443 4778877764
No 189
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=51.86 E-value=4.8 Score=35.74 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=27.6
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~ 346 (819)
.+.+-.+|.+++|+|||.++-.++..+ .+..+....++.
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~------g~~~is~g~llr 44 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY------GYTHLSTGDLLR 44 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT------CCEEEEHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh------CCeeEeccHHHH
Confidence 455667899999999999987776654 345556555554
No 190
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Probab=51.82 E-value=5.6 Score=39.47 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=19.9
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLAS 327 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~ 327 (819)
...+.++.++||.|||-.|=+++..
T Consensus 67 p~~niLfiGPTGvGKTElAk~LA~~ 91 (364)
T d1um8a_ 67 SKSNILLIGPTGSGKTLMAQTLAKH 91 (364)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcceeeeCCCCccHHHHHHHHHhh
Confidence 3567899999999999887665544
No 191
>d1a7ia1 g.39.1.3 (A:8-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=50.92 E-value=3.8 Score=22.82 Aligned_cols=24 Identities=33% Similarity=0.951 Sum_probs=16.4
Q ss_pred ccccccCC---CCeEecCCCCccccccCc
Q 003450 53 SCQACGES---ENLMSCDTCTYAYHAKCL 78 (819)
Q Consensus 53 ~C~~c~~~---~~~~~C~~C~~~~H~~c~ 78 (819)
.|..|++. .+-+.|+ +++||..|.
T Consensus 2 kcg~c~ktvy~aeevqc~--grsfhk~cf 28 (28)
T d1a7ia1 2 KCGACGRTVYHAEEVQCD--GRSFHRCCF 28 (28)
T ss_dssp BCSSSCCBCSSTTEEEET--TEEEESSSE
T ss_pred ccccccceEeeeeeeeec--CceeccccC
Confidence 37777754 3467776 478998883
No 192
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}
Probab=50.90 E-value=9 Score=32.72 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=18.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHH
Q 003450 307 VILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l 328 (819)
..|.+++|+|||.-+=+++..+
T Consensus 36 i~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 36 VYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCccHHHHHHHHHhhc
Confidence 4578999999998888888776
No 193
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}
Probab=50.78 E-value=8.8 Score=35.98 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=32.3
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec-CcchHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREF 352 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P-~~ll~qW~~e~ 352 (819)
++=..++++.|+|||..++.++......+. .++++-- .+.-..|.+.+
T Consensus 54 g~itei~G~~gsGKTtl~l~~~~~~q~~g~-~~vyidtE~~~~~~~a~~~ 102 (263)
T d1u94a1 54 GRIVEIYGPESSGKTTLTLQVIAAAQREGK-TCAFIDAEHALDPIYARKL 102 (263)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEESSCCCCHHHHHHT
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCC-EEEEEccccccCHHHHHHh
Confidence 344679999999999999888887765543 4444444 45555554433
No 194
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=50.53 E-value=4.2 Score=38.40 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=28.3
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcch
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll 345 (819)
..++.||.++.|+|||..+-+++..+ ..|++.+.+..+.
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~----~~~~~~~~~~~l~ 78 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANEC----QANFISIKGPELL 78 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHT----TCEEEEECHHHHH
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHh----CCcEEEEEHHHhh
Confidence 45688999999999999888877765 2266666544443
No 195
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=50.16 E-value=3.7 Score=25.52 Aligned_cols=20 Identities=25% Similarity=0.938 Sum_probs=15.3
Q ss_pred ccccccCCCC---------eEecCCCCcc
Q 003450 53 SCQACGESEN---------LMSCDTCTYA 72 (819)
Q Consensus 53 ~C~~c~~~~~---------~~~C~~C~~~ 72 (819)
.|..|+.++. ++.|..|+..
T Consensus 3 ~C~~C~spDT~l~ke~R~~~l~C~aCGa~ 31 (37)
T d1neea2 3 ICHECNRPDTRIIREGRISLLKCEACGAK 31 (37)
T ss_dssp HHTCCSSCSSCCEEETTTTEEECSTTSCC
T ss_pred ECCCCCCCCCEEEEcCCEEEEEeccCCCC
Confidence 5888987753 7889999753
No 196
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}
Probab=49.96 E-value=7.3 Score=33.14 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=22.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGERI 333 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~~~ 333 (819)
..+.+..|+|||..+-.++.++...+.
T Consensus 5 i~itG~~GSGKTTL~~~L~~~l~~~g~ 31 (170)
T d1np6a_ 5 LAFAAWSGTGKTTLLKKLIPALCARGI 31 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCC
Confidence 468899999999988888888776654
No 197
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.77 E-value=1.7 Score=31.23 Aligned_cols=45 Identities=22% Similarity=0.588 Sum_probs=29.5
Q ss_pred ccccccccCC----CC-eEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 51 DDSCQACGES----EN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 51 ~~~C~~c~~~----~~-~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
+..|.+|.+. .+ .+.-..|+-.||..|+..-+... .=.||.|+..
T Consensus 3 d~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---~~~CP~CR~~ 52 (65)
T d1g25a_ 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG---AGNCPECGTP 52 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT---SSSCTTTCCC
T ss_pred CCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcC---cCCCCCCCcC
Confidence 3569999742 22 23335799999999997654322 1259999864
No 198
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=49.25 E-value=4.2 Score=35.05 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=15.7
Q ss_pred CCceEEEcCCCCcHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAF 324 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~ 324 (819)
|+=.+|.+.+|+|||.++-++
T Consensus 4 g~iI~l~G~~GsGKSTia~~L 24 (176)
T d1zp6a1 4 GNILLLSGHPGSGKSTIAEAL 24 (176)
T ss_dssp TEEEEEEECTTSCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 334668999999999876443
No 199
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=49.09 E-value=3.2 Score=31.59 Aligned_cols=35 Identities=17% Similarity=0.448 Sum_probs=25.2
Q ss_pred CCCeEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 60 SENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 60 ~~~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
.+.+++|..|....-.+|-. ...+..|.|+.|...
T Consensus 10 ~~~i~RC~~C~ayiNP~~~~----~~~g~~w~C~~C~~~ 44 (85)
T d1pd0a5 10 DGLIVRCRRCRSYMNPFVTF----IEQGRRWRCNFCRLA 44 (85)
T ss_dssp SCCCCBCSSSCCBCCTTCEE----ETTTTEEECTTTCCE
T ss_pred CCCCccccCCcCEECCceEE----eCCCCEEECCCCCcc
Confidence 45688999999887766641 223456999999853
No 200
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.98 E-value=5.2 Score=35.34 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=18.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHH
Q 003450 307 VILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l 328 (819)
.+|.+++|+|||.+|-.++..+
T Consensus 4 I~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 4 VFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999997777665
No 201
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=48.63 E-value=4.6 Score=35.84 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=18.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHH
Q 003450 306 HVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l 328 (819)
-.+|.+++|+|||.+|-.++..+
T Consensus 10 iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 10 VIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999987776654
No 202
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=48.12 E-value=7.7 Score=33.69 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=22.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P 341 (819)
.++.+.+|+|||.++-.+...+...+ ..+.++.+
T Consensus 4 ivi~G~~GsGKTT~~~~La~~L~~~~-~~~~~~~~ 37 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKEILDNQG-INNKIINY 37 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHTTT-CCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC-CCEEEEEC
Confidence 46789999999977766655554333 24555543
No 203
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=48.00 E-value=4.8 Score=35.32 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=20.6
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLA 326 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~ 326 (819)
.+.+.++.++.|+|||-.|+.++.
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 577899999999999988877664
No 204
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=47.35 E-value=3.7 Score=31.46 Aligned_cols=32 Identities=31% Similarity=0.762 Sum_probs=26.4
Q ss_pred cccccccCCCC--eEecCCCCccccccCcCCCCC
Q 003450 52 DSCQACGESEN--LMSCDTCTYAYHAKCLVPPLK 83 (819)
Q Consensus 52 ~~C~~c~~~~~--~~~C~~C~~~~H~~c~~p~~~ 83 (819)
..|..|+..+. .-.|+.|+-..|..|...|..
T Consensus 48 ~~C~~C~~~~~g~~Y~C~~C~f~LH~~CA~~P~~ 81 (89)
T d1v5na_ 48 YTCDKCEEEGTIWSYHCDECDFDLHAKCALNEDT 81 (89)
T ss_dssp CCCTTTSCCCCSCEEECTTTCCCCCHHHHHCSSC
T ss_pred CEeCCCCCCcCCcEeEeccCCCEecHHHcCCCcc
Confidence 56999997655 678999999999999976643
No 205
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=47.19 E-value=9.1 Score=39.08 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=22.2
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhc
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~ 330 (819)
.+..||.+.-|+|||.+.+.-+.+++-
T Consensus 16 ~g~~lv~A~AGsGKT~~l~~r~~~ll~ 42 (485)
T d1w36b1 16 QGERLIEASAGTGKTFTIAALYLRLLL 42 (485)
T ss_dssp SSCEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCeEEEEcCchHHHHHHHHHHHHHHh
Confidence 556788899999999998887777763
No 206
>d1em8a_ c.128.1.1 (A:) DNA polymerase III chi subunit {Escherichia coli [TaxId: 562]}
Probab=46.46 E-value=11 Score=31.59 Aligned_cols=47 Identities=19% Similarity=0.067 Sum_probs=37.7
Q ss_pred chHHHHHHHHHHHHhcCceEEEEecchhHHHHHHHHHhh----CCCeEEEE
Q 003450 608 GKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF----KKWQYERI 654 (819)
Q Consensus 608 ~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~----~g~~~~~l 654 (819)
.-..++.+|+++....|+|++|+|.....++.|.++|=. .-++....
T Consensus 20 ~~~~~~crL~~K~~~~g~ri~I~~~d~~~~~~lD~~LWt~~~~sFiPH~~~ 70 (147)
T d1em8a_ 20 AVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLA 70 (147)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHCSTTCCCCEEET
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhCCCCccccccccc
Confidence 345678899999999999999999999999999999932 24555554
No 207
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=46.26 E-value=4.5 Score=23.77 Aligned_cols=25 Identities=28% Similarity=0.752 Sum_probs=17.5
Q ss_pred cccccccCCCC---eEecCCCCccccccCc
Q 003450 52 DSCQACGESEN---LMSCDTCTYAYHAKCL 78 (819)
Q Consensus 52 ~~C~~c~~~~~---~~~C~~C~~~~H~~c~ 78 (819)
..|..|++.-. ++. .-++.||..||
T Consensus 3 ~~CaGC~~~I~DRflL~--v~dr~WH~~CL 30 (30)
T d1rutx1 3 KRCAGCGGKIADRFLLY--AMDSYWHSRCL 30 (30)
T ss_dssp CBBTTTCCBCCCSEEEE--ETTEEECGGGC
T ss_pred cccCCCCCccchhhhhc--cchhhhhhhhC
Confidence 35899987643 332 56789999996
No 208
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.84 E-value=4.1 Score=35.94 Aligned_cols=23 Identities=35% Similarity=0.303 Sum_probs=18.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhc
Q 003450 308 ILADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 308 iLade~GlGKT~~~i~~l~~l~~ 330 (819)
+|.+.||+|||..|=.+...+..
T Consensus 23 ~L~G~pGSGKTTiAk~La~~l~~ 45 (195)
T d1x6va3 23 WLTGLSGAGKTTVSMALEEYLVC 45 (195)
T ss_dssp EEESSCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHh
Confidence 37899999999888777666543
No 209
>d1b8ta1 g.39.1.3 (A:1-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=45.70 E-value=3.9 Score=24.11 Aligned_cols=25 Identities=20% Similarity=0.806 Sum_probs=17.3
Q ss_pred cccccccCC---CCeEecCCCCccccccCc
Q 003450 52 DSCQACGES---ENLMSCDTCTYAYHAKCL 78 (819)
Q Consensus 52 ~~C~~c~~~---~~~~~C~~C~~~~H~~c~ 78 (819)
..|..|++. .+-+.|+ +++||..|.
T Consensus 8 ~kcg~c~ktvy~aeevqc~--g~sfhk~cf 35 (35)
T d1b8ta1 8 KKCGVCQKAVYFAEEVQCE--GSSFHKSCF 35 (35)
T ss_dssp EECTTTCCEECSSCCEEET--TEEECTTTC
T ss_pred ceeccccceEeeeeeeeec--CcccccccC
Confidence 458888864 3456666 478999884
No 210
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}
Probab=45.22 E-value=6.1 Score=34.54 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=20.5
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLA 326 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~ 326 (819)
.+.+.++.++.|+|||-.|+.++.
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 577889999999999988877665
No 211
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}
Probab=45.21 E-value=5.8 Score=34.44 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=20.9
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLA 326 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~ 326 (819)
..+.++++.++.|+|||-.++.++.
T Consensus 13 ~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 13 VYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3577899999999999988877665
No 212
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.63 E-value=9.6 Score=34.25 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=20.4
Q ss_pred EEcCCCCcHHHHHHHHHHHHhcCCC
Q 003450 309 LADEMGLGKTIQSIAFLASLFGERI 333 (819)
Q Consensus 309 Lade~GlGKT~~~i~~l~~l~~~~~ 333 (819)
+.+..|+|||.++-.+...|...+.
T Consensus 8 ieG~dGsGKsT~~~~L~~~L~~~g~ 32 (209)
T d1nn5a_ 8 LEGVDRAGKSTQSRKLVEALCAAGH 32 (209)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCC
Confidence 4499999999999888888766654
No 213
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}
Probab=44.53 E-value=6.4 Score=34.72 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=18.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHH
Q 003450 306 HVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l 328 (819)
-.+|.+++|+|||.+|-.++.++
T Consensus 8 iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999886666655
No 214
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=44.05 E-value=14 Score=34.66 Aligned_cols=60 Identities=10% Similarity=0.057 Sum_probs=37.4
Q ss_pred HHHHHHH--hhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHH
Q 003450 293 GLNFLRF--SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (819)
Q Consensus 293 ~v~~l~~--~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~ 352 (819)
++++++- .+..++=..++++.|+|||..++.++......+..++.|=+..++-..|.+.+
T Consensus 47 ~lD~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~a~~~ 108 (269)
T d1mo6a1 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKL 108 (269)
T ss_dssp HHHHHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHHHHHH
T ss_pred HHHHhhccCCcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHHHHHh
Confidence 4554431 23334446799999999999888777766555443444444455656675554
No 215
>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=43.20 E-value=3.3 Score=25.62 Aligned_cols=20 Identities=30% Similarity=0.958 Sum_probs=15.2
Q ss_pred ccccccCCCC---------eEecCCCCcc
Q 003450 53 SCQACGESEN---------LMSCDTCTYA 72 (819)
Q Consensus 53 ~C~~c~~~~~---------~~~C~~C~~~ 72 (819)
.|..|+.++. ++.|+.|+..
T Consensus 2 ~C~~C~spDT~l~ke~R~~~l~C~aCGa~ 30 (36)
T d1k81a_ 2 ICRECGKPDTKIIKEGRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEE
T ss_pred CCCCCCCCCCEEEEcCCEEEEEeccCCCC
Confidence 5888987753 7889999853
No 216
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=42.39 E-value=7.6 Score=35.00 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=17.4
Q ss_pred EEcCCCCcHHHHHHHHHHHH
Q 003450 309 LADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 309 Lade~GlGKT~~~i~~l~~l 328 (819)
+.++.|+|||.||-.++..+
T Consensus 8 IdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 8 IDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EECSSCSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 55999999999998888776
No 217
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.67 E-value=8.6 Score=29.72 Aligned_cols=41 Identities=17% Similarity=0.492 Sum_probs=29.5
Q ss_pred ccccccccCCC-CeEecCCCCccccccCcCCCCCCCCCCCcccCccCC
Q 003450 51 DDSCQACGESE-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 51 ~~~C~~c~~~~-~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
...|.+|.+.= +-+.+..|+-.||..|+..-+.. .||.|..
T Consensus 22 ~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~------~CP~Cr~ 63 (97)
T d1jm7b_ 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT------GCPVCYT 63 (97)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT------BCSSSCC
T ss_pred cCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc------cccccCC
Confidence 45799998653 34456679999999998655432 4999984
No 218
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=39.22 E-value=13 Score=35.67 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=19.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHH
Q 003450 306 HVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l 328 (819)
..++++++|.|||..|-+++..+
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHhhc
Confidence 46789999999999988877665
No 219
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}
Probab=39.18 E-value=6.4 Score=38.42 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=29.6
Q ss_pred ceEEEecccccccCcc-cHHHHHHHhc-------------ccCcEEEEeCCCCCCChh
Q 003450 429 WQCMIVDEGHRLKNKD-SKLFSSLKQY-------------STRHRVLLTGTPLQNNLD 472 (819)
Q Consensus 429 ~~~lIvDEaH~~kn~~-s~~~~~l~~l-------------~~~~~llLTgTP~~n~~~ 472 (819)
-.++++||++++.... +.+...+..- .+.+.++.|..|....+.
T Consensus 128 ~gvl~iDEi~~~~~~~~~aLl~~me~~~v~i~r~g~~~~~p~~f~liaa~Np~~~~l~ 185 (333)
T d1g8pa_ 128 RGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLR 185 (333)
T ss_dssp TEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCC
T ss_pred ccEeecccHHHHHHHHHHHHhhhhcCCeEEecccCceecCCCCEEEEEecCccccccc
Confidence 4699999999995432 4445555321 356778899999776543
No 220
>d4cpai_ g.3.2.1 (I:) Carboxypeptidase A inhibitor {Potato [TaxId: 4113]}
Probab=39.01 E-value=8.6 Score=22.69 Aligned_cols=16 Identities=31% Similarity=0.773 Sum_probs=12.1
Q ss_pred CCCCCCcccCccCCCC
Q 003450 84 APPSGSWRCPECVSPL 99 (819)
Q Consensus 84 ~~~~~~w~C~~c~~~~ 99 (819)
+.-.|.|||..|....
T Consensus 15 ddcsg~~fcqacw~~a 30 (37)
T d4cpai_ 15 DDCSGAWFCQACWNSA 30 (37)
T ss_dssp SSSCCCSSCCEEETTT
T ss_pred cCccchHHHHHHHHhc
Confidence 3457899999998643
No 221
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=38.65 E-value=8.9 Score=37.32 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=17.0
Q ss_pred HhhcCCCc-eEE-EcCCCCcHHHHHHH
Q 003450 299 FSWSKQTH-VIL-ADEMGLGKTIQSIA 323 (819)
Q Consensus 299 ~~~~~~~~-~iL-ade~GlGKT~~~i~ 323 (819)
..+..|.+ +|+ .+.+|+|||.+..+
T Consensus 78 ~~~~~G~n~~i~aYGqTGSGKTyTm~G 104 (330)
T d1ry6a_ 78 DLYENGCVCSCFAYGQTGSGKTYTMLG 104 (330)
T ss_dssp HHHHHCCEEEEEEECCTTSSHHHHHHB
T ss_pred HHHhcCCCeEEEeeeccccccceeeec
Confidence 33444544 354 58999999999764
No 222
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}
Probab=38.57 E-value=6.7 Score=38.86 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=15.7
Q ss_pred cCCC-ceEE-EcCCCCcHHHHHHH
Q 003450 302 SKQT-HVIL-ADEMGLGKTIQSIA 323 (819)
Q Consensus 302 ~~~~-~~iL-ade~GlGKT~~~i~ 323 (819)
..|. .+|+ .+.+|+|||.++.+
T Consensus 110 l~G~n~tifaYGqTGSGKTyTm~G 133 (362)
T d1v8ka_ 110 FEGGKATCFAYGQTGSGKTHTMGG 133 (362)
T ss_dssp HTTCEEEEEEEESTTSSHHHHHHC
T ss_pred HhccCceEEeeccCCCCCceeeee
Confidence 3444 4454 48999999999865
No 223
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.54 E-value=2.9 Score=28.32 Aligned_cols=43 Identities=26% Similarity=0.466 Sum_probs=27.7
Q ss_pred cccccCC---C-CeEecCCCCccccccCcCCCCCCCCCCCcccCccCCCC
Q 003450 54 CQACGES---E-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (819)
Q Consensus 54 C~~c~~~---~-~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~~ 99 (819)
|.+|.+. + ..+.-..|+-.||..|+..-+. .+.-.||.|+...
T Consensus 3 CpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~---~~~~~CP~CR~~~ 49 (52)
T d1ur6b_ 3 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRT---DENGLCPACRKPY 49 (52)
T ss_dssp ETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTT---TSCCBCTTTCCBC
T ss_pred CcCCChhhhCCCceEEecCCCCccchHHHHHHHh---hcCCCCCccCCcC
Confidence 7888642 2 2222236999999999865433 2344799998653
No 224
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=37.99 E-value=24 Score=30.31 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=18.1
Q ss_pred EEcCCCCcHHHHHHHHHHHHhcC
Q 003450 309 LADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 309 Lade~GlGKT~~~i~~l~~l~~~ 331 (819)
|+++.|+|||..|=.+...+...
T Consensus 27 I~G~~GSGKSTla~~L~~~l~~~ 49 (198)
T d1rz3a_ 27 IDGLSRSGKTTLANQLSQTLREQ 49 (198)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHhccc
Confidence 89999999998887776665443
No 225
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=37.99 E-value=13 Score=32.89 Aligned_cols=25 Identities=20% Similarity=0.041 Sum_probs=19.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcC
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGE 331 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~ 331 (819)
.++.+-+|+|||..|-.+..++...
T Consensus 5 i~l~GlpgsGKSTla~~L~~~l~~~ 29 (213)
T d1bifa1 5 IVMVGLPARGKTYISKKLTRYLNFI 29 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4789999999999987777666433
No 226
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}
Probab=37.62 E-value=13 Score=35.15 Aligned_cols=48 Identities=15% Similarity=0.063 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 003450 292 EGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (819)
Q Consensus 292 ~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~ 340 (819)
.+++.| .-...|++..|.++.|+|||..+..++.........-++|++
T Consensus 32 r~ID~l-~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~~~~~~v~~~~ 79 (289)
T d1xpua3 32 RVLDLA-SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 79 (289)
T ss_dssp HHHHHH-SCCBTTCEEEEEECSSSSHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred eeeeec-ccccCCCeeeEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEE
Confidence 455544 333577888888899999998877777666544433444443
No 227
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=36.13 E-value=46 Score=29.75 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=43.3
Q ss_pred cCchHHHHHHHHHHHHhcCceEEEEecchhHHHHHH----HHHhhCCCe----EEEEeccCChHHHHHHHHHhc
Q 003450 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLE----DYLTFKKWQ----YERIDGKVGGAERQIRIDRFN 671 (819)
Q Consensus 606 ~s~Kl~~l~~ll~~l~~~g~kvlIFs~~~~~ld~L~----~~L~~~g~~----~~~l~G~~~~~~R~~~i~~F~ 671 (819)
.+||-....-.+..+...|.++||.+.......-+. +++...|++ ...+++.....++...+....
T Consensus 68 GsGKT~~~~~~~~~~~~~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 141 (237)
T d1gkub1 68 GVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLR 141 (237)
T ss_dssp TSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGG
T ss_pred CChHHHHHHHHHHHHHHhcCeEEEEeccHHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhcccc
Confidence 688886655444555567889999999876655444 444444443 455667777777777766553
No 228
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}
Probab=36.08 E-value=13 Score=31.53 Aligned_cols=30 Identities=20% Similarity=0.072 Sum_probs=23.3
Q ss_pred EEcCCCCcHHHHHHHHHHHHhcCCCCceEE
Q 003450 309 LADEMGLGKTIQSIAFLASLFGERISPHLV 338 (819)
Q Consensus 309 Lade~GlGKT~~~i~~l~~l~~~~~~~~LI 338 (819)
+++..|+|||..+-.++..|...+..-..|
T Consensus 6 I~G~~gSGKTTli~~l~~~L~~~g~~v~vi 35 (165)
T d1xjca_ 6 VVGYKHSGKTTLMEKWVAAAVREGWRVGTV 35 (165)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEeCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 788999999998888888887666443333
No 229
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Probab=35.39 E-value=11 Score=32.20 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=18.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHH
Q 003450 306 HVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l 328 (819)
+.+|.++.|+|||..+-.++..+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l 24 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHhcC
Confidence 36899999999998766666554
No 230
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}
Probab=34.91 E-value=37 Score=26.81 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=13.4
Q ss_pred eEEEEecchhHHHHHHHHHhhCCCeEE
Q 003450 626 RVLIYSQFQHMLDLLEDYLTFKKWQYE 652 (819)
Q Consensus 626 kvlIFs~~~~~ld~L~~~L~~~g~~~~ 652 (819)
|+||.-........|..+|...|+.+.
T Consensus 4 rILiVDDd~~~~~~l~~~L~~~g~~v~ 30 (121)
T d1mvoa_ 4 KILVVDDEESIVTLLQYNLERSGYDVI 30 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCEEE
Confidence 445554445555555555555554433
No 231
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}
Probab=34.54 E-value=21 Score=31.51 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=25.8
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 003450 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (819)
Q Consensus 305 ~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P 341 (819)
+-..+-+..|+|||.++=.+...+...+...+++.-|
T Consensus 3 kfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~e 39 (210)
T d4tmka_ 3 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTRE 39 (210)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecC
Confidence 3345679999999999888777776665544444444
No 232
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
Probab=33.63 E-value=88 Score=24.42 Aligned_cols=92 Identities=8% Similarity=0.035 Sum_probs=51.3
Q ss_pred hcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEecccc----ccccCCcccCC
Q 003450 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA----GGLGINLATAD 697 (819)
Q Consensus 622 ~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a----~~~GinL~~a~ 697 (819)
..|..|..+++....++.+. ...+....+|-.++...--+.+...+.......+++++... .-+++++.. +
T Consensus 23 ~~g~~v~~a~~~~~al~~l~----~~~~dlillD~~mp~~~g~~~~~~lr~~~~~~piI~lt~~~~~~~~~~~~~~Ga-~ 97 (122)
T d1kgsa2 23 KEMFTVDVCYDGEEGMYMAL----NEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGA-D 97 (122)
T ss_dssp HTTCEEEEESSHHHHHHHHH----HSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSCHHHHHHHTCCCCC-S
T ss_pred HCCCEEEEEcchHHHHHHHH----hhCccccccccccccchhHHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHcCC-c
Confidence 45778887777766655543 35677888887766555555555554333333333443332 223444332 2
Q ss_pred EEEEeCCCCCcchHHHHhHhhhh
Q 003450 698 TVIIYDSDWNPHADLQAMARAHR 720 (819)
Q Consensus 698 ~VI~~d~~wnp~~~~Qa~gR~~R 720 (819)
. ++--|+++.....++.++.|
T Consensus 98 ~--yl~KP~~~~~L~~~i~~~l~ 118 (122)
T d1kgsa2 98 D--YLPKPFDLRELIARVRALIR 118 (122)
T ss_dssp E--EEESSCCHHHHHHHHHHHHH
T ss_pred e--eecCCCCHHHHHHHHHHHHH
Confidence 2 22246778777777766655
No 233
>d1ak2a2 g.41.2.1 (A:147-176) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Probab=33.26 E-value=12 Score=22.03 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=17.9
Q ss_pred CCCccccccCcCCCCCCCCCCCcccCccCC
Q 003450 68 TCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (819)
Q Consensus 68 ~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~ 97 (819)
.|++.||..-- .|.-+..|..|-.
T Consensus 2 ~sG~~Yhv~f~------PPk~~g~cD~cg~ 25 (30)
T d1ak2a2 2 QSGRSYHEEFN------PPKEPMKDDITGE 25 (30)
T ss_dssp TTCCEEBTTTB------CCSSTTBCTTTCC
T ss_pred CCCCCcccccc------CCCCCCccCCCCC
Confidence 58999997655 4555667999975
No 234
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}
Probab=33.01 E-value=28 Score=27.56 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=16.4
Q ss_pred ceEEEEecchhHHHHHHHHHhhCCCeEE
Q 003450 625 HRVLIYSQFQHMLDLLEDYLTFKKWQYE 652 (819)
Q Consensus 625 ~kvlIFs~~~~~ld~L~~~L~~~g~~~~ 652 (819)
+||||.-........+...|...|+.+.
T Consensus 2 krILvVDD~~~~~~~l~~~L~~~g~~v~ 29 (119)
T d1peya_ 2 EKILIVDDQSGIRILLNEVFNKEGYQTF 29 (119)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEE
Confidence 4566665555666666666665665544
No 235
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Probab=32.86 E-value=13 Score=33.16 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=17.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHH
Q 003450 308 ILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 308 iLade~GlGKT~~~i~~l~~l 328 (819)
.+.++.|+|||.||-.++..+
T Consensus 7 ~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 7 TIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 356999999999998888776
No 236
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}
Probab=32.78 E-value=21 Score=38.28 Aligned_cols=43 Identities=30% Similarity=0.342 Sum_probs=29.2
Q ss_pred CchhHHH--HHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHh
Q 003450 286 LHPYQLE--GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 286 L~~~Q~~--~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~ 329 (819)
++.|.+. |...|.. ...+...|+.++.|+|||-.+=.++.++.
T Consensus 67 PHif~iA~~Ay~~l~~-~~~~QsIiisGeSGsGKTe~~k~il~yL~ 111 (684)
T d1lkxa_ 67 PHMYALANDAYRSMRQ-SQENQCVIISGESGAGKTEASKKIMQFLT 111 (684)
T ss_dssp CCHHHHHHHHHHHHHH-HCCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHH-cCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4556653 3333322 23456789999999999999887777764
No 237
>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.77 E-value=2.9 Score=31.53 Aligned_cols=37 Identities=16% Similarity=0.331 Sum_probs=29.6
Q ss_pred hHhhhhcCCcceeeEeeecccccccccccCCCCcccc
Q 003450 196 RILACRGEDDEKEYLVKYKELSYDECYWEYESDISAF 232 (819)
Q Consensus 196 ril~~~~~~~~~~~lvKw~~l~y~~~TWE~~~~~~~~ 232 (819)
+||..+..++..+|||.|+|..-..-.|.+++.+..+
T Consensus 24 kil~~~~~~~~~~Y~VHy~GWn~~~DeWv~~~ril~~ 60 (83)
T d2f5ka1 24 KCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRVLKY 60 (83)
T ss_dssp EEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGEEES
T ss_pred EEEEEEEcCCceEEEEEecccCCccccccChhhcccC
Confidence 5777776678899999999998888889887765443
No 238
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}
Probab=32.68 E-value=17 Score=34.71 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=21.6
Q ss_pred EEcCCCCcHHHHHHHHHHHHhcCCCCceEEEec
Q 003450 309 LADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (819)
Q Consensus 309 Lade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P 341 (819)
+++..|+|||..|-.+...+.....++-..+++
T Consensus 85 IaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is 117 (308)
T d1sq5a_ 85 IAGSVAVGKSTTARVLQALLSRWPEHRRVELIT 117 (308)
T ss_dssp EEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred EeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEe
Confidence 899999999987766655554333344444444
No 239
>d1x62a2 g.39.1.3 (A:8-42) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.51 E-value=7.8 Score=23.01 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=14.5
Q ss_pred cccccccCCCCeEecCCCCccccccCc
Q 003450 52 DSCQACGESENLMSCDTCTYAYHAKCL 78 (819)
Q Consensus 52 ~~C~~c~~~~~~~~C~~C~~~~H~~c~ 78 (819)
..|..|+.+--=..=..-++.+|..|.
T Consensus 9 p~CdkCg~GIVG~~VK~rDk~rHPeCf 35 (35)
T d1x62a2 9 PMCDKCGTGIVGVFVKLRDRHRHPECY 35 (35)
T ss_dssp CCCSSSCCCCCSSCEECSSCEECTTTT
T ss_pred ccccccCCCcEeEEEEeccccCCCCCC
Confidence 457777655321112345667777773
No 240
>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima [TaxId: 2336]}
Probab=31.56 E-value=44 Score=29.62 Aligned_cols=57 Identities=16% Similarity=0.126 Sum_probs=37.3
Q ss_pred CCceEEEcCC-CCcHHHHHHHHHHHHhcCCCCceEEEecCcchHHHHHHHHHHcCCCeEEE
Q 003450 304 QTHVILADEM-GLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVM 363 (819)
Q Consensus 304 ~~~~iLade~-GlGKT~~~i~~l~~l~~~~~~~~LIv~P~~ll~qW~~e~~~~~p~~~v~~ 363 (819)
.+.+||.|+| .+|.|+ +.++..++..+.+++.+++=. ...+=.+.+.+.+|+..+++
T Consensus 125 ~~~vil~DPmlATG~s~--~~ai~~L~~~g~~~I~~v~~i-as~~Gl~~i~~~~P~v~I~t 182 (210)
T d1o5oa_ 125 DKEVFLLDPMLATGVSS--IKAIEILKENGAKKITLVALI-AAPEGVEAVEKKYEDVKIYV 182 (210)
T ss_dssp TCEEEEECSEESSSHHH--HHHHHHHHHTTCCEEEEECSE-ECHHHHHHHHHHCTTCEEEE
T ss_pred CceEEEEhHHhhcCccH--HHHHHHHHhCCCCcEEEEEEE-EchHHHHHHHHHCCCCEEEE
Confidence 4668999987 789994 445666666665554444433 33455777888889877554
No 241
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=31.21 E-value=13 Score=35.71 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHh
Q 003450 307 VILADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~ 329 (819)
.++++++|+|||..|-+++..++
T Consensus 56 ~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 56 FLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp EEEBSCSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCcchHHHHHHHHHHHhc
Confidence 46789999999999988887775
No 242
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=30.54 E-value=27 Score=32.46 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=32.4
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEecC-cchHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREF 352 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~P~-~ll~qW~~e~ 352 (819)
++=+.++++.|+|||..++.++......+ +.++.+-.. +.-..|.+.+
T Consensus 57 g~itei~G~~~sGKT~l~l~~~~~aqk~g-~~v~yiDtE~~~~~~~a~~~ 105 (268)
T d1xp8a1 57 GRITEIYGPESGGKTTLALAIVAQAQKAG-GTCAFIDAEHALDPVYARAL 105 (268)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT-CCEEEEESSCCCCHHHHHHT
T ss_pred ceEEEEecCCccchHHHHHHHHHHHHhCC-CEEEEEECCccCCHHHHHHh
Confidence 33456999999999999988887765544 456666664 4435554443
No 243
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=30.44 E-value=26 Score=27.66 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=16.6
Q ss_pred eEEEEecchhHHHHHHHHHhhCCCeEEE
Q 003450 626 RVLIYSQFQHMLDLLEDYLTFKKWQYER 653 (819)
Q Consensus 626 kvlIFs~~~~~ld~L~~~L~~~g~~~~~ 653 (819)
|+||.-........+...|...||.+..
T Consensus 2 rILiVdDd~~~~~~l~~~L~~~g~~v~~ 29 (117)
T d2a9pa1 2 KILIVDDEKPISDIIKFNMTKEGYEVVT 29 (117)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEE
Confidence 5566656666666666666666665443
No 244
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.80 E-value=15 Score=24.07 Aligned_cols=22 Identities=32% Similarity=0.809 Sum_probs=16.2
Q ss_pred cccccccccCCCCeEecCCCCcc
Q 003450 50 KDDSCQACGESENLMSCDTCTYA 72 (819)
Q Consensus 50 ~~~~C~~c~~~~~~~~C~~C~~~ 72 (819)
....|..|+..+ +..|..|...
T Consensus 7 ~~~~C~~C~~~~-~~~C~~C~~~ 28 (47)
T d2dj8a1 7 SSESCWNCGRKA-SETCSGCNTA 28 (47)
T ss_dssp CSCCCSSSCSCC-CEECTTTSCC
T ss_pred CCCcCCCCCccc-cccCCCCCCe
Confidence 446699998765 6689998654
No 245
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Probab=29.64 E-value=16 Score=32.58 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=18.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHh
Q 003450 306 HVILADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l~ 329 (819)
-..|.+-+|+|||..|-.+...+.
T Consensus 26 vIwltGlsGsGKTTia~~L~~~l~ 49 (208)
T d1m7ga_ 26 TIWLTGLSASGKSTLAVELEHQLV 49 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 355899999999988777666654
No 246
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.50 E-value=5.6 Score=31.29 Aligned_cols=46 Identities=24% Similarity=0.498 Sum_probs=29.7
Q ss_pred ccccccccCCCC-eEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 51 ~~~C~~c~~~~~-~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
...|.+|.+.-. -+. -.|+-.|+..|+..-+.. ..+...||.|+..
T Consensus 21 ~l~CpIC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~-~~~~~~CP~Cr~~ 67 (103)
T d1jm7a_ 21 ILECPICLELIKEPVS-TKCDHIFCKFCMLKLLNQ-KKGPSQCPLCKND 67 (103)
T ss_dssp HTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHHS-SSSSCCCTTTSCC
T ss_pred CcCCCccCchhCCeEE-cCCCCchhhHHHHHHHHH-CCCCCcCcCCCCc
Confidence 356999986432 222 249999999998543322 2345689999853
No 247
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}
Probab=28.60 E-value=17 Score=33.78 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=22.3
Q ss_pred EEcCCCCcHHHHHHHHHHHHhcCCCCceEEE
Q 003450 309 LADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (819)
Q Consensus 309 Lade~GlGKT~~~i~~l~~l~~~~~~~~LIv 339 (819)
+++-=|.|||.+++.+...+...+. ++|+|
T Consensus 6 i~gKGGvGKTT~a~nLA~~LA~~G~-rVllI 35 (269)
T d1cp2a_ 6 IYGKGGIGKSTTTQNLTSGLHAMGK-TIMVV 35 (269)
T ss_dssp EEECTTSSHHHHHHHHHHHHHTTTC-CEEEE
T ss_pred EECCCcCCHHHHHHHHHHHHHhCCC-cEEEE
Confidence 3455699999999999988876653 55554
No 248
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}
Probab=28.54 E-value=15 Score=34.66 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=21.4
Q ss_pred EcCCCCcHHHHHHHHHHHHhcCCCCceEEE
Q 003450 310 ADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (819)
Q Consensus 310 ade~GlGKT~~~i~~l~~l~~~~~~~~LIv 339 (819)
.+-=|.|||.+++.+...|...+. ++|+|
T Consensus 8 sgKGGVGKTT~a~NLA~~LA~~G~-rVLlI 36 (289)
T d2afhe1 8 YGKGGIGKSTTTQNLVAALAEMGK-KVMIV 36 (289)
T ss_dssp EECTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCC-CEEEE
Confidence 445699999999988888876553 55554
No 249
>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.27 E-value=89 Score=24.09 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=31.9
Q ss_pred CceEEEEecch------hHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHH
Q 003450 624 GHRVLIYSQFQ------HMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (819)
Q Consensus 624 g~kvlIFs~~~------~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~ 668 (819)
.++|+||+..+ .......+.|...|++|..++=....+.++.+..
T Consensus 14 ~~~VvvF~Kgt~~~p~Cp~c~~ak~lL~~~~i~~~~~~v~~~~~~~~~l~~ 64 (109)
T d1wika_ 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKT 64 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHH
T ss_pred cCCEEEEeCCCCCCCCChHHHHHHHHHHhcCCCceEEEecccHHHHHHHHH
Confidence 67999995422 2356677788899999999987766665555443
No 250
>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=27.66 E-value=30 Score=27.94 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=31.6
Q ss_pred cCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCCh
Q 003450 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGG 660 (819)
Q Consensus 623 ~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~ 660 (819)
.++++++||..-.........|...||.+..++|++..
T Consensus 79 ~~~~ivl~C~~G~rS~~aa~~L~~~G~~v~~l~GG~~a 116 (130)
T d1yt8a4 79 RGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSEA 116 (130)
T ss_dssp BTCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCGG
T ss_pred ccceEEeecCCCccHHHHHHHHHHcCCCeEEEcCchHH
Confidence 46799999988666777888999999999999998753
No 251
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=27.51 E-value=21 Score=31.96 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=24.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCCceEEE
Q 003450 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (819)
Q Consensus 308 iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv 339 (819)
+...--|.|||.+++.++.++...+ .++|+|
T Consensus 7 v~~~kGGvGKTtia~nLA~~la~~g-~~Vlli 37 (237)
T d1g3qa_ 7 IVSGKGGTGKTTVTANLSVALGDRG-RKVLAV 37 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCC-CCEEEE
Confidence 3446679999999999998887644 477777
No 252
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.28 E-value=7.6 Score=23.79 Aligned_cols=24 Identities=21% Similarity=0.685 Sum_probs=16.7
Q ss_pred cccccccCCC--CeEecCCCCccccccC
Q 003450 52 DSCQACGESE--NLMSCDTCTYAYHAKC 77 (819)
Q Consensus 52 ~~C~~c~~~~--~~~~C~~C~~~~H~~c 77 (819)
..|..|++.- +.+ ...++.||..|
T Consensus 9 pkC~~C~~~I~g~~v--~Al~~~wHpeC 34 (35)
T d1x3ha1 9 PKCGGCNRPVLENYL--SAMDTVWHPEC 34 (35)
T ss_dssp CBCTTTCCBCCSSCE--EETTEEECTTT
T ss_pred hhhhhcCCcccchhe--eecCCccCccc
Confidence 4699998753 322 25678899888
No 253
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.01 E-value=14 Score=31.78 Aligned_cols=17 Identities=24% Similarity=0.139 Sum_probs=13.8
Q ss_pred ceEEEcCCCCcHHHHHH
Q 003450 306 HVILADEMGLGKTIQSI 322 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i 322 (819)
=.|+++.+|+|||..|-
T Consensus 16 liil~G~pGsGKST~a~ 32 (172)
T d1yj5a2 16 VVVAVGFPGAGKSTFIQ 32 (172)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46899999999996543
No 254
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}
Probab=27.01 E-value=31 Score=37.06 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=28.8
Q ss_pred CchhHHHHH--HHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHh
Q 003450 286 LHPYQLEGL--NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 286 L~~~Q~~~v--~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~ 329 (819)
++.|.+... ..|.. ...+..+|+.++.|+|||-.+=.++.++.
T Consensus 106 PHifaiA~~Ay~~m~~-~~~nQsIiisGeSGaGKTe~~k~il~yL~ 150 (712)
T d1d0xa2 106 PHIFAISDVAYRSMLD-DRQNQSLLITGESGAGKTENTKKVIQYLA 150 (712)
T ss_dssp CCHHHHHHHHHHHHHH-HTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH-hCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 445555433 23322 24566789999999999999877777664
No 255
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.79 E-value=92 Score=27.77 Aligned_cols=45 Identities=2% Similarity=-0.021 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcE
Q 003450 634 QHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRF 678 (819)
Q Consensus 634 ~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~ 678 (819)
..++.-|.+.+...||....+++..+.+...+.++.+.+..-+.+
T Consensus 18 ~~~~~~i~~~~~~~Gy~~~~~~s~~d~~~~~~~i~~l~~~~vdgi 62 (255)
T d1byka_ 18 NLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGV 62 (255)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhccccce
Confidence 345667777777788887777777776766667777765444433
No 256
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}
Probab=26.77 E-value=49 Score=31.50 Aligned_cols=55 Identities=18% Similarity=0.122 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHhhcCCCc---eEEEcCCCCcHHHHHHHHHHHHhcCCCC-ceEEEecCc
Q 003450 289 YQLEGLNFLRFSWSKQTH---VILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLS 343 (819)
Q Consensus 289 ~Q~~~v~~l~~~~~~~~~---~iLade~GlGKT~~~i~~l~~l~~~~~~-~~LIv~P~~ 343 (819)
++..+...+...+...++ .=|.+.+|+|||...-.++.++...+.+ -+|.+=|.+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss 91 (323)
T d2qm8a1 33 HRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 91 (323)
T ss_dssp HHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred hHHHHHHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeeccccc
Confidence 444444444333333333 3478999999998888888777665555 444444443
No 257
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}
Probab=26.76 E-value=31 Score=37.26 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=28.5
Q ss_pred CchhHHHHHH--HHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHh
Q 003450 286 LHPYQLEGLN--FLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 286 L~~~Q~~~v~--~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~ 329 (819)
++.|.+.... .|.. ...+...|+.+|.|+|||..+=.++.++.
T Consensus 75 PHif~vA~~Ay~~l~~-~~~~Q~IiisGeSGsGKTe~~k~il~~l~ 119 (730)
T d1w7ja2 75 PHIFAVAEEAYKQMAR-DERNQSIIVSGESGAGKTVSAKYAMRYFA 119 (730)
T ss_dssp CCHHHHHHHHHHHHHH-HTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH-hCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4556554332 2322 23466788999999999998877777664
No 258
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}
Probab=26.70 E-value=38 Score=26.69 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=17.2
Q ss_pred CceEEEEecchhHHHHHHHHHhhCCCeE
Q 003450 624 GHRVLIYSQFQHMLDLLEDYLTFKKWQY 651 (819)
Q Consensus 624 g~kvlIFs~~~~~ld~L~~~L~~~g~~~ 651 (819)
|+|+||--........+..+|...|+.+
T Consensus 1 GkrILivDD~~~~~~~l~~~L~~~g~~v 28 (118)
T d1u0sy_ 1 GKRVLIVDDAAFMRMMLKDIITKAGYEV 28 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCce
Confidence 4566666666666666666666666654
No 259
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=26.59 E-value=32 Score=37.03 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=22.8
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHh
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l~ 329 (819)
..+...|+.++.|+|||-++=-++.++.
T Consensus 89 ~~~Q~IiisGeSGaGKTe~~k~il~yL~ 116 (710)
T d1br2a2 89 REDQSILCTGESGAGKTENTKKVIQYLA 116 (710)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999877777764
No 260
>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.58 E-value=15 Score=24.58 Aligned_cols=29 Identities=31% Similarity=0.749 Sum_probs=22.9
Q ss_pred ccccccccCCC-CeEecCCCCccccccCcC
Q 003450 51 DDSCQACGESE-NLMSCDTCTYAYHAKCLV 79 (819)
Q Consensus 51 ~~~C~~c~~~~-~~~~C~~C~~~~H~~c~~ 79 (819)
...|.+|++.- .-+.|..|....|..|..
T Consensus 14 ~~~C~~C~~~i~~g~~C~~C~~~~H~~C~~ 43 (52)
T d1faqa_ 14 LAFCDICQKFLLNGFRCQTCGYKFHEHCST 43 (52)
T ss_dssp CEECTTSSSEECSEEECTTTTCCBCSTTSS
T ss_pred CcCCccCCCccccCCCcCCCCChhhhhhhc
Confidence 35799998531 247899999999999994
No 261
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=26.56 E-value=24 Score=32.65 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=27.4
Q ss_pred cCCCce-EEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 003450 302 SKQTHV-ILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (819)
Q Consensus 302 ~~~~~~-iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~ 340 (819)
.+++.. ++.+-=|.|||.+++.+...+...+ .++|+|=
T Consensus 17 ~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G-~rVllvD 55 (279)
T d1ihua2 17 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMG-FDVHLTT 55 (279)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CcEEEEe
Confidence 445554 4678999999999999888887664 3555543
No 262
>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=26.51 E-value=29 Score=27.85 Aligned_cols=43 Identities=14% Similarity=0.286 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCceEEEEecchh-HHHHHHHHHhhCCCeEEEEe
Q 003450 613 LDKMMVKLKEQGHRVLIYSQFQH-MLDLLEDYLTFKKWQYERID 655 (819)
Q Consensus 613 l~~ll~~l~~~g~kvlIFs~~~~-~ld~L~~~L~~~g~~~~~l~ 655 (819)
..+.|..+.++|++++|||.... ..+.-.++|...|+++..+.
T Consensus 26 ~Ie~l~~L~~~G~~IIi~TaR~~~~~~~t~~wL~~~~i~yd~i~ 69 (122)
T d2obba1 26 AVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLEFYAAN 69 (122)
T ss_dssp HHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCCCSEES
T ss_pred HHHHHHHHHHCCCeEEEEecCCCcchHHHHHHHHHcCCCceehh
Confidence 46677888889999999987644 34556788888899886664
No 263
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=26.04 E-value=85 Score=25.16 Aligned_cols=45 Identities=13% Similarity=0.067 Sum_probs=23.8
Q ss_pred cCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhc
Q 003450 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (819)
Q Consensus 623 ~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~ 671 (819)
.|..|..++.....++.+. ...+....+|-.++...--+.+..++
T Consensus 23 ~g~~v~~a~~~~eAl~~l~----~~~~dlvilD~~mp~~~G~e~~~~lr 67 (137)
T d1ny5a1 23 KGIKVESAERGKEAYKLLS----EKHFNVVLLDLLLPDVNGLEILKWIK 67 (137)
T ss_dssp HTCEEEEESSHHHHHHHHH----HSCCSEEEEESBCSSSBHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHhh----ccccccchHHHhhhhhhHHHHHHHHH
Confidence 3666666555544444443 34566666665555444444444444
No 264
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=25.97 E-value=1.1e+02 Score=24.70 Aligned_cols=59 Identities=12% Similarity=-0.020 Sum_probs=44.1
Q ss_pred CceEEEEec----chhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccc
Q 003450 624 GHRVLIYSQ----FQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (819)
Q Consensus 624 g~kvlIFs~----~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~ 687 (819)
..|+|+.|- +.--..++..+|+..||.+..+-..++.++--+++.+.+. + ++.+|...+
T Consensus 3 k~kVvi~~~~gD~H~lG~~mva~~l~~~G~~V~~LG~~~p~e~iv~a~~~~~~---d--~v~lS~~~~ 65 (137)
T d1ccwa_ 3 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKA---D--AILVSSLYG 65 (137)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTC---S--EEEEEECSS
T ss_pred CCEEEEEecCCChhHHHHHHHHHHHHHCCCeEEecccccCHHHHHHHHHhcCC---C--EEEEeeccc
Confidence 457888874 3445889999999999999999889999988887777743 2 245555443
No 265
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.73 E-value=23 Score=30.89 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=17.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHH
Q 003450 306 HVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l 328 (819)
-.+|.++.|+|||..+=.++...
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHhC
Confidence 36899999999998765555543
No 266
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=25.57 E-value=32 Score=37.52 Aligned_cols=43 Identities=16% Similarity=0.348 Sum_probs=28.8
Q ss_pred CchhHHH--HHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHh
Q 003450 286 LHPYQLE--GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 286 L~~~Q~~--~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~ 329 (819)
++.|.+. |...|.. ...+...|+.+|.|+|||-++=.++.++.
T Consensus 104 PHifaiA~~Ay~~m~~-~~~~QsIiisGeSGaGKTe~~K~il~yL~ 148 (794)
T d2mysa2 104 PHIFSISDNAYQFMLT-DRENQSILITGESGAGKTVNTKRVIQYFA 148 (794)
T ss_dssp SCHHHHHHHHHHHHHH-HTCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH-cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4555553 3333322 23456789999999999998877777764
No 267
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=25.30 E-value=30 Score=37.74 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=28.6
Q ss_pred CchhHHH--HHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHh
Q 003450 286 LHPYQLE--GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 286 L~~~Q~~--~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~ 329 (819)
++.|.+. |...|.. ...+..+|+.+|.|+|||-.+=.++.++.
T Consensus 102 PHiyavA~~Ay~~m~~-~~~nQ~IiisGESGaGKTe~~K~il~yL~ 146 (789)
T d1kk8a2 102 PHLFSVADNAYQNMVT-DRENQSCLITGESGAGKTENTKKVIMYLA 146 (789)
T ss_dssp CCHHHHHHHHHHHHHH-HTSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH-hCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4555553 3333322 23456789999999999988777777664
No 268
>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]}
Probab=24.38 E-value=18 Score=25.42 Aligned_cols=29 Identities=28% Similarity=0.746 Sum_probs=23.3
Q ss_pred ccccccccCC--C---CeEecCCCCccccccCcC
Q 003450 51 DDSCQACGES--E---NLMSCDTCTYAYHAKCLV 79 (819)
Q Consensus 51 ~~~C~~c~~~--~---~~~~C~~C~~~~H~~c~~ 79 (819)
...|.+|++. | .-+.|..|....|..|..
T Consensus 19 ~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~ 52 (66)
T d1tbna_ 19 PTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVR 52 (66)
T ss_dssp CCBCSSSCCBCCTTSSSCEEETTTCCEECTTTTT
T ss_pred CcCCcCCCCcccCcccCccccCcccCeEChHHhc
Confidence 3569999853 1 358999999999999994
No 269
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}
Probab=24.19 E-value=61 Score=25.54 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=12.1
Q ss_pred eEEEEecchhHHHHHHHHHhhCCCeE
Q 003450 626 RVLIYSQFQHMLDLLEDYLTFKKWQY 651 (819)
Q Consensus 626 kvlIFs~~~~~ld~L~~~L~~~g~~~ 651 (819)
|+||.-........|..+|...|+.+
T Consensus 5 ~ILiVDDd~~~~~~l~~~L~~~g~~v 30 (123)
T d1dbwa_ 5 TVHIVDDEEPVRKSLAFMLTMNGFAV 30 (123)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTCEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEE
Confidence 44444444444444444444444443
No 270
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=24.13 E-value=18 Score=34.16 Aligned_cols=37 Identities=27% Similarity=0.801 Sum_probs=26.4
Q ss_pred cccccccccCC-------------C-CeEecCCCCccccccCcCCCCCCCCCCCcccCccCCC
Q 003450 50 KDDSCQACGES-------------E-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (819)
Q Consensus 50 ~~~~C~~c~~~-------------~-~~~~C~~C~~~~H~~c~~p~~~~~~~~~w~C~~c~~~ 98 (819)
...+|.+||.. | ..+.|..|.-.||+.=+ .|+.|-+.
T Consensus 163 ~~~~CPvCGs~P~~s~l~~~~~~~G~R~l~C~~C~teW~~~R~------------~C~~Cg~~ 213 (290)
T d2fiya1 163 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRI------------KCSHCEES 213 (290)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTT------------SCSSSCCC
T ss_pred cCCcCCCCCCcchhheeeccCCCCCceEEECCCCCCccccccc------------cCCCCCCC
Confidence 34679999952 1 28899999999985422 48888653
No 271
>d1x61a1 g.39.1.3 (A:8-34) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.86 E-value=15 Score=19.79 Aligned_cols=11 Identities=18% Similarity=0.637 Sum_probs=8.1
Q ss_pred CCCccccccCc
Q 003450 68 TCTYAYHAKCL 78 (819)
Q Consensus 68 ~C~~~~H~~c~ 78 (819)
.-++.||..|.
T Consensus 17 aldrvfhvgcf 27 (27)
T d1x61a1 17 ALDRVFHVGCF 27 (27)
T ss_dssp CSSSEECTTTC
T ss_pred EEeeeEEeccC
Confidence 35788998884
No 272
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=23.84 E-value=29 Score=32.29 Aligned_cols=34 Identities=26% Similarity=0.258 Sum_probs=25.8
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhcCCCCceEEEe
Q 003450 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv~ 340 (819)
-.++.+-=|.|||.++.+++..+.+.+ +++|+|-
T Consensus 10 ~i~~sGKGGVGKTTvaa~lA~~lA~~G-~rVLlvD 43 (296)
T d1ihua1 10 YLFFTGKGGVGKTSISCATAIRLAEQG-KRVLLVS 43 (296)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred EEEEECCCcChHHHHHHHHHHHHHHCC-CCEEEEe
Confidence 345667779999999999888887655 4677766
No 273
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.46 E-value=19 Score=31.84 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=16.2
Q ss_pred EEcCCCCcHHHHHHHHHHHHh
Q 003450 309 LADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 309 Lade~GlGKT~~~i~~l~~l~ 329 (819)
|++++|+|||..|=.+...+.
T Consensus 7 I~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 7 VSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EECSTTSSHHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHHhc
Confidence 789999999977765655553
No 274
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.24 E-value=16 Score=21.02 Aligned_cols=8 Identities=38% Similarity=0.945 Sum_probs=5.1
Q ss_pred CccccccC
Q 003450 70 TYAYHAKC 77 (819)
Q Consensus 70 ~~~~H~~c 77 (819)
.+.||..|
T Consensus 24 ~khYHP~C 31 (32)
T d1wiga1 24 EKHYHPSC 31 (32)
T ss_dssp SCCBCTTT
T ss_pred ccccCCCC
Confidence 45677666
No 275
>d1dsva_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=23.18 E-value=14 Score=21.59 Aligned_cols=12 Identities=42% Similarity=0.886 Sum_probs=9.3
Q ss_pred ecCCCCcccccc
Q 003450 65 SCDTCTYAYHAK 76 (819)
Q Consensus 65 ~C~~C~~~~H~~ 76 (819)
.|..|.+++|+.
T Consensus 4 lCPrC~kG~HWa 15 (31)
T d1dsva_ 4 LCPRCKKGYHWK 15 (31)
T ss_dssp BCTTTCSSBSCT
T ss_pred cCccccCcchHH
Confidence 588888888864
No 276
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.17 E-value=20 Score=20.81 Aligned_cols=26 Identities=15% Similarity=0.396 Sum_probs=15.0
Q ss_pred cccccccCCCC-eEecCCCCccccccC
Q 003450 52 DSCQACGESEN-LMSCDTCTYAYHAKC 77 (819)
Q Consensus 52 ~~C~~c~~~~~-~~~C~~C~~~~H~~c 77 (819)
..|..|+..-. -..=..-++.||..|
T Consensus 4 ~~CaGC~~~I~DRflL~a~Dr~WH~~C 30 (30)
T d1j2oa1 4 LTCGGCQQNIGDRYFLKAIDQYWHEDC 30 (30)
T ss_dssp BCBSSSCSCBCSSEEEECSSSEECTTT
T ss_pred cccCCCCCcchHHHHHHHHHHHHhcCC
Confidence 35888876532 222234567788777
No 277
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}
Probab=23.13 E-value=64 Score=30.70 Aligned_cols=38 Identities=26% Similarity=0.263 Sum_probs=26.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhcCCCC-ceEEEecCcc
Q 003450 307 VILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLST 344 (819)
Q Consensus 307 ~iLade~GlGKT~~~i~~l~~l~~~~~~-~~LIv~P~~l 344 (819)
.-+.+.+|+|||...-.++.++...+.+ .+|-+=|.+.
T Consensus 57 IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~ 95 (327)
T d2p67a1 57 LGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSP 95 (327)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCcee
Confidence 4478999999998888888887776655 3444445443
No 278
>d1x64a1 g.39.1.3 (A:8-52) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.93 E-value=15 Score=23.34 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=16.0
Q ss_pred cccccccCCCCeEecCCCCccccccCc
Q 003450 52 DSCQACGESENLMSCDTCTYAYHAKCL 78 (819)
Q Consensus 52 ~~C~~c~~~~~~~~C~~C~~~~H~~c~ 78 (819)
..|..|+.+--=..=..-++.+|..|.
T Consensus 19 P~CdkCg~GIVG~~VK~rDK~rHPeCf 45 (45)
T d1x64a1 19 PLCDKCGSGIVGAVVKARDKYRHPECF 45 (45)
T ss_dssp CBCTTTCCBCCSCCEESSSCEECTTTC
T ss_pred ccccccCCCcEEEEEEeccccCCCCCC
Confidence 457777765332222345677888874
No 279
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.83 E-value=22 Score=33.45 Aligned_cols=22 Identities=27% Similarity=0.452 Sum_probs=17.2
Q ss_pred EEcCCCCcHHHHHHHHHHHHhc
Q 003450 309 LADEMGLGKTIQSIAFLASLFG 330 (819)
Q Consensus 309 Lade~GlGKT~~~i~~l~~l~~ 330 (819)
|++..|+|||..+-.++..+..
T Consensus 32 i~G~qGSGKSTl~~~l~~~L~~ 53 (286)
T d1odfa_ 32 FSGPQGSGKSFTSIQIYNHLME 53 (286)
T ss_dssp EECCTTSSHHHHHHHHHHHHHH
T ss_pred eECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999877666666544
No 280
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=22.61 E-value=34 Score=30.41 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=23.1
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCCceEEE
Q 003450 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (819)
Q Consensus 308 iLade~GlGKT~~~i~~l~~l~~~~~~~~LIv 339 (819)
+...-=|.|||..|+.++..+.+.+ .++++|
T Consensus 6 v~s~KGGvGKTtia~nlA~~la~~g-~~Vlli 36 (232)
T d1hyqa_ 6 VASGKGGTGKTTITANLGVALAQLG-HDVTIV 36 (232)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred EECCCCCChHHHHHHHHHHHHHhCC-CCEEEE
Confidence 4456679999999999888887654 356655
No 281
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Probab=22.33 E-value=22 Score=32.59 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.9
Q ss_pred cCCCceEEEcCCCCcHHH
Q 003450 302 SKQTHVILADEMGLGKTI 319 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~ 319 (819)
..|.-.-|.++.|+|||.
T Consensus 26 ~~Ge~vaivG~sGsGKST 43 (242)
T d1mv5a_ 26 QPNSIIAFAGPSGGGKST 43 (242)
T ss_dssp CTTEEEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 456677799999999994
No 282
>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.21 E-value=9.9 Score=22.41 Aligned_cols=26 Identities=38% Similarity=0.864 Sum_probs=15.3
Q ss_pred cccccccCC---CCeEecCCCCccccccCc
Q 003450 52 DSCQACGES---ENLMSCDTCTYAYHAKCL 78 (819)
Q Consensus 52 ~~C~~c~~~---~~~~~C~~C~~~~H~~c~ 78 (819)
..|..|+++ .+++. -.=+..||+.|.
T Consensus 3 g~Ca~C~~~I~~~e~Vm-RA~~~VyHl~CF 31 (31)
T d1rutx3 3 GACSACGQSIPASELVM-RAQGNVYHLKCF 31 (31)
T ss_dssp EECTTTCCEECTTSEEE-EETTEEECGGGC
T ss_pred cccccccCcCChhHhhe-ecccceeeeccC
Confidence 468888864 33332 123567888883
No 283
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.52 E-value=55 Score=25.64 Aligned_cols=91 Identities=16% Similarity=0.099 Sum_probs=47.4
Q ss_pred hcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEecccccc----ccCCcccCC
Q 003450 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGG----LGINLATAD 697 (819)
Q Consensus 622 ~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~----~GinL~~a~ 697 (819)
..|.++..+++....++.+.+ ..+....+|-.++...--+.+...+......+ +++++.... .++... |+
T Consensus 22 ~~g~~v~~a~~~~eal~~l~~----~~~dliilD~~mP~~~G~e~~~~ir~~~~~pi-I~lt~~~~~~~~~~a~~~G-a~ 95 (119)
T d1zh2a1 22 GDGMRVFEAETLQRGLLEAAT----RKPDLIILDLGLPDGDGIEFIRDLRQWSAVPV-IVLSARSEESDKIAALDAG-AD 95 (119)
T ss_dssp TTTCEEEEESSHHHHHHHHHH----HCCSEEEEESEETTEEHHHHHHHHHTTCCCCE-EEEESCCSHHHHHHHHHHT-CS
T ss_pred HCCCEEEEeCCHHHHHHHHHh----cCCCEEEeccccCCCCCchHHHHHHhccCCcE-EEEeccCCHHHHHHHHHcC-CC
Confidence 457788777777666666544 35677777766654433344444443232223 333332221 222222 33
Q ss_pred EEEEeCCCCCcchHHHHhHhhhh
Q 003450 698 TVIIYDSDWNPHADLQAMARAHR 720 (819)
Q Consensus 698 ~VI~~d~~wnp~~~~Qa~gR~~R 720 (819)
.. +--|+++....+++.++.|
T Consensus 96 dy--l~KP~~~~~L~~~i~~~lr 116 (119)
T d1zh2a1 96 DY--LSKPFGIGELQARLRVALR 116 (119)
T ss_dssp EE--EESSCCHHHHHHHHHHHHH
T ss_pred EE--EECCCCHHHHHHHHHHHHh
Confidence 32 2236777777777766654
No 284
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=21.49 E-value=1.7e+02 Score=22.57 Aligned_cols=93 Identities=13% Similarity=0.032 Sum_probs=54.0
Q ss_pred HhcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccc----cccCCcccC
Q 003450 621 KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG----GLGINLATA 696 (819)
Q Consensus 621 ~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~----~~GinL~~a 696 (819)
...|..|..+.+....++.+. ...+....+|-.++...--+.+.+.++......+++++...- ..++.+. |
T Consensus 22 ~~~g~~v~~a~~~~eal~~~~----~~~~dlvl~D~~mP~~~G~el~~~ir~~~~~~piI~lt~~~~~~~~~~a~~~G-a 96 (121)
T d1ys7a2 22 RLSGFEVATAVDGAEALRSAT----ENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAG-A 96 (121)
T ss_dssp HHTTCEEEEESSHHHHHHHHH----HSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECCCTTTCCCTTTTTT-C
T ss_pred HHCCCEEEEECCHHHHHHHHH----hCCCCEEEEEeeccCcccHHHHHHHHhcCCCCEEEEEEeeCCHHHHHHHHHCC-C
Confidence 345888888888777666554 356788888877765544455555543333333344443322 1222222 2
Q ss_pred CEEEEeCCCCCcchHHHHhHhhhh
Q 003450 697 DTVIIYDSDWNPHADLQAMARAHR 720 (819)
Q Consensus 697 ~~VI~~d~~wnp~~~~Qa~gR~~R 720 (819)
+. ++-=|+++.....++.|+.|
T Consensus 97 ~d--yl~KP~~~~~L~~~i~~~l~ 118 (121)
T d1ys7a2 97 DD--YLVKPFVLAELVARVKALLR 118 (121)
T ss_dssp SE--EEESSCCHHHHHHHHHHHHH
T ss_pred CE--EEECCCCHHHHHHHHHHHHH
Confidence 32 23346888888888877765
No 285
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=21.43 E-value=28 Score=31.80 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=20.1
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 303 KQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 303 ~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
.++.++|.++.|+|||..+..++..+
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 45667799999999998776666554
No 286
>d2buda1 b.34.13.3 (A:367-454) Putative histone acetyltransferase MOF {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=21.34 E-value=7.2 Score=29.43 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=21.3
Q ss_pred hhhhhhccCCCcccccccChHHH
Q 003450 131 KQYLVKWKGLSYLHCTWVPEKEF 153 (819)
Q Consensus 131 ~eylVKw~~~s~~h~~W~~~~~l 153 (819)
.+|+|-|.|+.-.-.+|++.+.|
T Consensus 44 ~eYyVHY~g~n~r~DEWV~~~ri 66 (88)
T d2buda1 44 DEYYVHYVGLNRRLDGWVGRHRI 66 (88)
T ss_dssp CEEEEECSSSCTTTCEEEETTTE
T ss_pred eEEEEEecCccchhhhccCHhHh
Confidence 68999999999999999998865
No 287
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=21.30 E-value=15 Score=21.62 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=9.2
Q ss_pred ecCCCCcccccc
Q 003450 65 SCDTCTYAYHAK 76 (819)
Q Consensus 65 ~C~~C~~~~H~~ 76 (819)
.|..|.+++|+.
T Consensus 4 lCPrC~kG~HWa 15 (32)
T d1cl4a_ 4 LCPRCKRGKHWA 15 (32)
T ss_dssp SCSSCSSCSSCS
T ss_pred cCccccCcchHH
Confidence 588888888864
No 288
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=21.28 E-value=1.3e+02 Score=23.49 Aligned_cols=94 Identities=12% Similarity=0.161 Sum_probs=44.9
Q ss_pred hcCceEEEEecchhHHHHHHHHHhhCCCeEEEEeccCChHHHHHHHHHhcCCCCCcEEEEeccccccccCCcc--cCCEE
Q 003450 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLA--TADTV 699 (819)
Q Consensus 622 ~~g~kvlIFs~~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~~~GinL~--~a~~V 699 (819)
..|.+|..+++-...++.+ ....+....+|-.++...--..+..++.......+++++. .+....-.. .+-..
T Consensus 24 ~~g~~v~~a~~~~~al~~~----~~~~~dliilD~~mp~~~G~~~~~~i~~~~~~~~ii~lt~-~~~~~~~~~a~~~Ga~ 98 (128)
T d1yioa2 24 SAGFEVETFDCASTFLEHR----RPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITA-HGDIPMTVRAMKAGAI 98 (128)
T ss_dssp TTTCEEEEESSHHHHHHHC----CTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEES-CTTSCCCHHHHHTTEE
T ss_pred HcCCCccccccHHHHHHHH----HhcCCCEeehhhhcccchhHHHHHHHHhhCCCCeEEEEEE-ECCHHHHHHHHHCCCC
Confidence 3466666666555544433 3355666777766655444444444443332222233322 122221111 12233
Q ss_pred EEeCCCCCcchHHHHhHhhhh
Q 003450 700 IIYDSDWNPHADLQAMARAHR 720 (819)
Q Consensus 700 I~~d~~wnp~~~~Qa~gR~~R 720 (819)
=++.-|+++....+++.|+.+
T Consensus 99 dyl~KP~~~~~L~~~i~~~l~ 119 (128)
T d1yioa2 99 EFLPKPFEEQALLDAIEQGLQ 119 (128)
T ss_dssp EEEESSCCHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHH
Confidence 344556666666666665544
No 289
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=21.25 E-value=30 Score=29.64 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=16.0
Q ss_pred CCceEEEcCCCCcHHHHHHHHH
Q 003450 304 QTHVILADEMGLGKTIQSIAFL 325 (819)
Q Consensus 304 ~~~~iLade~GlGKT~~~i~~l 325 (819)
|+=.+|.+++|+|||.++=.++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~ 23 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLR 23 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3446899999999997654333
No 290
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.23 E-value=48 Score=30.76 Aligned_cols=37 Identities=19% Similarity=0.358 Sum_probs=26.5
Q ss_pred HHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHh
Q 003450 292 EGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF 329 (819)
Q Consensus 292 ~~v~~l~~~~~~~~~~iLade~GlGKT~~~i~~l~~l~ 329 (819)
.+++-| .-.-.|++..|.++.|+|||..+..++....
T Consensus 57 raID~l-~pigkGQr~~If~~~g~GKt~l~~~i~~~~~ 93 (276)
T d2jdid3 57 KVVDLL-APYAKGGKIGLFGGAGVGKTVLIMELINNVA 93 (276)
T ss_dssp HHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred eeeeee-ccccCCCEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 566655 3335677777888889999988877776643
No 291
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.19 E-value=31 Score=32.93 Aligned_cols=25 Identities=12% Similarity=-0.015 Sum_probs=17.1
Q ss_pred HhhcCCCc--eEEEcCCCCcHHHHHHH
Q 003450 299 FSWSKQTH--VILADEMGLGKTIQSIA 323 (819)
Q Consensus 299 ~~~~~~~~--~iLade~GlGKT~~~i~ 323 (819)
.....|.+ .+..+.+|+|||.+..+
T Consensus 69 ~~~l~G~n~~i~aYGqtgSGKTyT~~G 95 (323)
T d1bg2a_ 69 KDVLEGYNGTIFAYGQTSSGKTHTMEG 95 (323)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTB
T ss_pred HHHHcCCCcceeeecccCCCCceeccC
Confidence 33344443 45689999999998754
No 292
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=20.88 E-value=20 Score=32.53 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=18.3
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHH
Q 003450 302 SKQTHVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 302 ~~~~~~iLade~GlGKT~~~i~~l~~l 328 (819)
..|.-.-|.++.|+|||. .+.++..+
T Consensus 29 ~~Ge~~~iiG~sGsGKST-Ll~~i~gl 54 (230)
T d1l2ta_ 29 KEGEFVSIMGPSGSGKST-MLNIIGCL 54 (230)
T ss_dssp CTTCEEEEECSTTSSHHH-HHHHHTTS
T ss_pred cCCCEEEEECCCCCCcch-hhHhccCC
Confidence 456667799999999994 34444443
No 293
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=20.67 E-value=14 Score=34.89 Aligned_cols=26 Identities=15% Similarity=0.182 Sum_probs=16.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCC
Q 003450 308 ILADEMGLGKTIQSIAFLASLFGERI 333 (819)
Q Consensus 308 iLade~GlGKT~~~i~~l~~l~~~~~ 333 (819)
-+++..|+|||..+-++...+...+.
T Consensus 8 gIaG~SGSGKTTva~~l~~i~~~~~v 33 (288)
T d1a7ja_ 8 SVTGSSGAGTSTVKHTFDQIFRREGV 33 (288)
T ss_dssp EEESCC---CCTHHHHHHHHHHHHTC
T ss_pred EEECCCCCcHHHHHHHHHHHHhhcCC
Confidence 48999999999888777666654443
No 294
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}
Probab=20.64 E-value=50 Score=29.03 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=19.2
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHH
Q 003450 306 HVILADEMGLGKTIQSIAFLASL 328 (819)
Q Consensus 306 ~~iLade~GlGKT~~~i~~l~~l 328 (819)
..++.++.++|||+.+.+++..+
T Consensus 55 ~i~~~GP~~TGKS~f~~sl~~~l 77 (205)
T d1tuea_ 55 CLVFCGPANTGKSYFGMSFIHFI 77 (205)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHHh
Confidence 44589999999999988877766
No 295
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}
Probab=20.28 E-value=34 Score=33.07 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=16.7
Q ss_pred HhhcCCCc--eEEEcCCCCcHHHHHH
Q 003450 299 FSWSKQTH--VILADEMGLGKTIQSI 322 (819)
Q Consensus 299 ~~~~~~~~--~iLade~GlGKT~~~i 322 (819)
.....|.+ .+..+.+|+|||.+..
T Consensus 74 ~~~l~G~n~~i~aYGqtgSGKTyTm~ 99 (345)
T d1x88a1 74 DEVIMGYNCTIFAYGQTGTGKTFTME 99 (345)
T ss_dssp HHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred HHHhccCCceEEeeeeccccceEEee
Confidence 44445554 3468999999999874
No 296
>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}
Probab=20.22 E-value=40 Score=26.02 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCceEEEEecchhHHHHHHHHHhhCCCe-EEEEeccCChH
Q 003450 613 LDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQ-YERIDGKVGGA 661 (819)
Q Consensus 613 l~~ll~~l~~~g~kvlIFs~~~~~ld~L~~~L~~~g~~-~~~l~G~~~~~ 661 (819)
+...+..+ ..+.+++|||..-........+|...|++ +..+.|++..-
T Consensus 48 l~~~~~~~-~~~~~ivv~c~~g~rs~~~a~~L~~~G~~~v~~l~GG~~~W 96 (108)
T d1gmxa_ 48 LGAFMRDN-DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96 (108)
T ss_dssp HHHHHHHS-CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHHH
T ss_pred HHHHhhhc-cccCcccccCCCChHHHHHHHHHHHcCCCCEEEEcChHHHH
Confidence 33444443 34678999998877777888899999995 88899987543
Done!