Query 003451
Match_columns 819
No_of_seqs 787 out of 4091
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 23:40:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003451.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003451hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3.1E-82 6.7E-87 729.5 75.8 651 134-816 52-703 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.8E-79 3.8E-84 706.7 73.1 639 131-802 84-724 (857)
3 PLN03218 maturation of RBCL 1; 100.0 4E-69 8.6E-74 604.6 71.8 546 205-769 367-915 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 6.5E-69 1.4E-73 602.9 70.9 545 172-735 369-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 2.9E-63 6.3E-68 558.1 60.6 473 134-627 88-561 (697)
6 PLN03081 pentatricopeptide (PP 100.0 7.6E-62 1.6E-66 546.6 53.2 513 206-770 85-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.5E-37 5.3E-42 368.0 91.1 612 183-816 271-883 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-37 3.8E-42 369.3 86.2 627 145-797 273-899 (899)
9 PRK11447 cellulose synthase su 100.0 3.9E-28 8.6E-33 287.0 80.3 637 136-797 31-739 (1157)
10 PRK11447 cellulose synthase su 100.0 5.9E-27 1.3E-31 277.1 77.9 608 176-804 31-706 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 3.8E-24 8.3E-29 240.4 74.7 610 145-806 56-714 (987)
12 KOG2002 TPR-containing nuclear 100.0 4.5E-23 9.8E-28 215.2 62.7 664 134-811 42-758 (1018)
13 PRK09782 bacteriophage N4 rece 100.0 2.5E-22 5.5E-27 225.9 70.8 581 185-809 56-683 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 2.8E-23 6.1E-28 205.3 41.0 440 354-811 53-498 (966)
15 KOG4626 O-linked N-acetylgluco 99.9 1.3E-22 2.7E-27 200.7 39.2 445 282-780 51-501 (966)
16 KOG2002 TPR-containing nuclear 99.9 4.3E-20 9.4E-25 193.2 59.2 597 189-801 146-801 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 2.9E-19 6.3E-24 198.8 53.3 432 315-801 128-574 (615)
18 KOG0495 HAT repeat protein [RN 99.9 1.9E-16 4.1E-21 158.5 61.7 492 292-805 389-887 (913)
19 TIGR00990 3a0801s09 mitochondr 99.9 3.3E-18 7.2E-23 190.3 54.8 431 279-762 127-570 (615)
20 PRK15174 Vi polysaccharide exp 99.9 1.7E-18 3.7E-23 191.5 46.4 358 395-762 16-380 (656)
21 PRK11788 tetratricopeptide rep 99.9 2.6E-19 5.7E-24 189.5 36.6 301 182-490 44-354 (389)
22 PRK10049 pgaA outer membrane p 99.9 7.6E-18 1.6E-22 190.7 50.4 411 353-806 19-464 (765)
23 PRK14574 hmsH outer membrane p 99.9 9.3E-17 2E-21 177.4 56.7 451 323-806 43-521 (822)
24 PRK11788 tetratricopeptide rep 99.9 3.8E-19 8.3E-24 188.2 36.8 297 463-797 44-346 (389)
25 KOG2076 RNA polymerase III tra 99.9 4.3E-15 9.2E-20 155.4 62.8 612 181-801 147-852 (895)
26 PRK15174 Vi polysaccharide exp 99.9 8.3E-18 1.8E-22 186.0 45.9 354 387-763 45-403 (656)
27 KOG2076 RNA polymerase III tra 99.9 1.3E-14 2.7E-19 151.9 62.4 641 142-795 148-892 (895)
28 PRK10049 pgaA outer membrane p 99.9 2.6E-16 5.7E-21 178.2 53.3 426 311-779 12-470 (765)
29 PRK14574 hmsH outer membrane p 99.8 2.8E-15 6.2E-20 165.8 56.1 439 289-762 44-512 (822)
30 KOG0495 HAT repeat protein [RN 99.8 6.4E-13 1.4E-17 133.7 62.0 581 188-805 266-853 (913)
31 KOG4422 Uncharacterized conser 99.8 4.4E-15 9.5E-20 141.5 42.8 453 207-729 115-591 (625)
32 KOG4422 Uncharacterized conser 99.8 9.5E-15 2.1E-19 139.3 43.3 297 185-486 127-465 (625)
33 KOG1915 Cell cycle control pro 99.8 1.6E-13 3.5E-18 132.7 50.3 473 316-801 75-588 (677)
34 KOG2003 TPR repeat-containing 99.8 1.2E-15 2.6E-20 146.1 34.7 490 286-797 208-721 (840)
35 KOG2003 TPR repeat-containing 99.8 1.5E-14 3.3E-19 138.7 39.3 484 206-714 199-709 (840)
36 KOG1915 Cell cycle control pro 99.7 1.7E-11 3.6E-16 119.0 48.8 472 207-727 72-584 (677)
37 KOG0547 Translocase of outer m 99.7 2.8E-13 6.1E-18 131.8 33.3 223 571-802 338-570 (606)
38 KOG1155 Anaphase-promoting com 99.7 3.9E-12 8.6E-17 123.2 40.7 384 414-816 159-552 (559)
39 KOG2047 mRNA splicing factor [ 99.7 4.4E-10 9.5E-15 113.6 55.1 312 467-785 360-710 (835)
40 KOG1173 Anaphase-promoting com 99.7 2.6E-12 5.6E-17 127.8 39.1 278 521-805 241-525 (611)
41 KOG2047 mRNA splicing factor [ 99.7 1.6E-09 3.5E-14 109.6 58.8 509 280-804 103-694 (835)
42 KOG1155 Anaphase-promoting com 99.7 5.7E-11 1.2E-15 115.3 46.0 366 309-691 159-534 (559)
43 KOG4318 Bicoid mRNA stability 99.6 6.3E-12 1.4E-16 131.2 38.7 551 199-796 16-623 (1088)
44 KOG3785 Uncharacterized conser 99.6 1.3E-11 2.8E-16 115.3 36.1 497 288-816 31-551 (557)
45 KOG4162 Predicted calmodulin-b 99.6 2E-10 4.3E-15 119.0 48.3 439 347-805 321-790 (799)
46 TIGR00540 hemY_coli hemY prote 99.6 1.9E-12 4.1E-17 136.1 35.1 289 501-798 96-399 (409)
47 PRK10747 putative protoheme IX 99.6 3E-12 6.5E-17 133.7 35.7 286 502-799 97-391 (398)
48 KOG4318 Bicoid mRNA stability 99.6 5.3E-12 1.1E-16 131.8 35.7 86 451-539 201-286 (1088)
49 KOG1126 DNA-binding cell divis 99.6 2.9E-13 6.3E-18 137.5 25.1 209 591-805 418-627 (638)
50 PF13429 TPR_15: Tetratricopep 99.6 6.1E-15 1.3E-19 147.2 12.2 261 529-797 13-276 (280)
51 KOG1173 Anaphase-promoting com 99.6 7.8E-11 1.7E-15 117.5 39.4 497 178-704 21-527 (611)
52 TIGR00540 hemY_coli hemY prote 99.6 7.1E-12 1.5E-16 131.7 34.5 289 432-762 97-398 (409)
53 KOG0547 Translocase of outer m 99.6 1.8E-11 3.9E-16 119.5 33.9 82 285-370 121-204 (606)
54 PRK10747 putative protoheme IX 99.6 1.3E-11 2.8E-16 128.9 36.0 258 465-762 129-389 (398)
55 KOG1156 N-terminal acetyltrans 99.5 1.6E-09 3.6E-14 110.0 45.4 472 282-797 11-510 (700)
56 PF13429 TPR_15: Tetratricopep 99.5 4.2E-14 9E-19 141.2 12.9 261 495-762 14-276 (280)
57 COG2956 Predicted N-acetylgluc 99.5 5.8E-11 1.2E-15 110.0 31.8 287 468-796 49-345 (389)
58 KOG1156 N-terminal acetyltrans 99.5 6E-08 1.3E-12 99.0 57.1 600 185-805 19-695 (700)
59 KOG1126 DNA-binding cell divis 99.5 3.7E-12 8.1E-17 129.6 26.0 262 491-763 355-620 (638)
60 KOG3785 Uncharacterized conser 99.5 1.7E-10 3.8E-15 107.8 34.7 452 322-803 30-495 (557)
61 COG2956 Predicted N-acetylgluc 99.5 4.8E-11 1.1E-15 110.5 30.5 293 432-762 48-346 (389)
62 KOG0985 Vesicle coat protein c 99.5 4.9E-08 1.1E-12 103.8 54.9 214 557-794 982-1245(1666)
63 KOG1174 Anaphase-promoting com 99.5 2.2E-09 4.7E-14 102.9 40.9 294 502-805 209-507 (564)
64 COG3071 HemY Uncharacterized e 99.5 1.9E-10 4.2E-15 110.2 33.7 287 502-798 97-390 (400)
65 COG3071 HemY Uncharacterized e 99.5 2.8E-10 6.1E-15 109.1 33.7 285 362-656 97-388 (400)
66 KOG3617 WD40 and TPR repeat-co 99.5 2.8E-08 6E-13 103.5 46.6 559 146-807 741-1368(1416)
67 KOG4162 Predicted calmodulin-b 99.4 3E-08 6.4E-13 103.2 46.3 436 304-762 313-782 (799)
68 KOG1129 TPR repeat-containing 99.4 5.4E-11 1.2E-15 110.0 20.9 240 563-808 227-468 (478)
69 KOG0985 Vesicle coat protein c 99.4 1.7E-07 3.8E-12 99.8 49.2 576 174-800 607-1310(1666)
70 KOG2376 Signal recognition par 99.4 2.1E-08 4.5E-13 101.1 39.3 148 644-795 356-517 (652)
71 KOG1129 TPR repeat-containing 99.4 6.6E-11 1.4E-15 109.5 20.0 234 527-768 226-461 (478)
72 KOG2376 Signal recognition par 99.4 3.8E-08 8.2E-13 99.3 40.5 182 538-725 321-517 (652)
73 TIGR02521 type_IV_pilW type IV 99.4 4.7E-10 1E-14 109.5 27.4 203 594-800 31-234 (234)
74 KOG3616 Selective LIM binding 99.3 3.4E-07 7.3E-12 94.3 45.2 385 223-687 546-931 (1636)
75 PF12569 NARP1: NMDA receptor- 99.3 4.7E-08 1E-12 102.9 40.8 292 287-587 12-333 (517)
76 KOG1174 Anaphase-promoting com 99.3 1.2E-07 2.6E-12 91.3 38.9 293 465-768 207-503 (564)
77 PRK12370 invasion protein regu 99.3 9.8E-10 2.1E-14 120.2 28.7 216 573-799 318-536 (553)
78 KOG1127 TPR repeat-containing 99.3 6.7E-07 1.4E-11 95.8 46.9 589 189-805 474-1111(1238)
79 KOG1840 Kinesin light chain [C 99.3 3.3E-09 7.1E-14 109.9 29.1 197 565-761 247-477 (508)
80 KOG1127 TPR repeat-containing 99.3 3.8E-06 8.1E-11 90.3 51.6 616 174-806 493-1183(1238)
81 PF12569 NARP1: NMDA receptor- 99.3 1.2E-07 2.6E-12 99.8 40.8 292 321-622 11-333 (517)
82 KOG1840 Kinesin light chain [C 99.3 2.2E-09 4.9E-14 111.1 26.9 28 490-517 284-311 (508)
83 PRK12370 invasion protein regu 99.3 2.9E-09 6.3E-14 116.5 28.7 217 538-763 318-535 (553)
84 PRK11189 lipoprotein NlpI; Pro 99.3 3.8E-09 8.2E-14 105.5 27.0 230 574-812 41-279 (296)
85 TIGR02521 type_IV_pilW type IV 99.3 5.6E-09 1.2E-13 101.9 27.7 199 208-411 31-230 (234)
86 KOG3616 Selective LIM binding 99.2 2.8E-07 6E-12 94.9 38.5 193 531-757 739-931 (1636)
87 KOG0548 Molecular co-chaperone 99.2 1.3E-07 2.7E-12 94.8 33.6 224 527-768 227-458 (539)
88 PF13041 PPR_2: PPR repeat fam 99.2 4.4E-11 9.4E-16 82.4 6.6 49 347-395 1-49 (50)
89 KOG0548 Molecular co-chaperone 99.2 1E-07 2.2E-12 95.4 32.2 394 391-805 9-462 (539)
90 COG3063 PilF Tfp pilus assembl 99.2 2.1E-08 4.5E-13 89.1 24.2 206 596-805 37-243 (250)
91 KOG0624 dsRNA-activated protei 99.2 1.9E-07 4E-12 87.7 31.1 191 460-657 44-251 (504)
92 PF13041 PPR_2: PPR repeat fam 99.2 8.9E-11 1.9E-15 80.9 6.6 27 260-286 19-45 (50)
93 KOG3617 WD40 and TPR repeat-co 99.2 4.1E-06 8.8E-11 87.9 42.3 148 182-375 737-884 (1416)
94 COG3063 PilF Tfp pilus assembl 99.2 1.4E-08 2.9E-13 90.3 21.1 168 631-802 37-206 (250)
95 KOG4340 Uncharacterized conser 99.1 2E-07 4.4E-12 85.7 27.5 317 210-550 12-336 (459)
96 PRK11189 lipoprotein NlpI; Pro 99.1 1.4E-07 3E-12 94.3 27.3 226 538-773 40-274 (296)
97 cd05804 StaR_like StaR_like; a 99.0 1.3E-06 2.8E-11 91.2 34.8 205 594-799 114-337 (355)
98 KOG0624 dsRNA-activated protei 99.0 2E-05 4.4E-10 74.4 36.2 325 386-762 40-369 (504)
99 KOG1914 mRNA cleavage and poly 99.0 4.5E-05 9.8E-10 76.8 40.1 151 610-762 347-500 (656)
100 KOG2053 Mitochondrial inherita 99.0 0.00014 3E-09 78.1 48.6 162 632-796 439-606 (932)
101 cd05804 StaR_like StaR_like; a 99.0 5.1E-06 1.1E-10 86.7 35.1 262 498-763 52-336 (355)
102 KOG4340 Uncharacterized conser 98.9 2.2E-06 4.8E-11 79.0 27.3 349 178-550 15-372 (459)
103 KOG1125 TPR repeat-containing 98.9 4.4E-08 9.5E-13 98.8 17.9 233 534-801 295-530 (579)
104 KOG1125 TPR repeat-containing 98.9 2E-07 4.3E-12 94.3 22.0 260 497-790 293-563 (579)
105 PRK04841 transcriptional regul 98.9 6.9E-06 1.5E-10 97.5 38.8 203 599-801 536-763 (903)
106 PF04733 Coatomer_E: Coatomer 98.9 8.1E-08 1.8E-12 94.2 18.1 156 638-805 111-272 (290)
107 PF04733 Coatomer_E: Coatomer 98.9 1.1E-07 2.4E-12 93.2 18.1 252 499-768 11-268 (290)
108 PRK04841 transcriptional regul 98.9 1.7E-05 3.7E-10 94.2 38.7 336 253-589 384-761 (903)
109 PLN02789 farnesyltranstransfer 98.8 5.5E-06 1.2E-10 82.5 27.1 221 572-800 50-304 (320)
110 PRK15359 type III secretion sy 98.8 2.8E-07 6.1E-12 80.5 15.9 115 684-806 13-129 (144)
111 KOG1128 Uncharacterized conser 98.8 1.5E-06 3.3E-11 90.3 23.2 220 557-798 396-616 (777)
112 PRK10370 formate-dependent nit 98.8 1.6E-06 3.5E-11 80.3 21.5 160 636-814 23-187 (198)
113 KOG1914 mRNA cleavage and poly 98.8 0.00031 6.6E-09 71.1 42.1 418 171-622 18-500 (656)
114 KOG3060 Uncharacterized conser 98.8 6.3E-06 1.4E-10 74.7 23.4 131 675-809 97-231 (289)
115 KOG2053 Mitochondrial inherita 98.7 0.0007 1.5E-08 72.9 47.2 122 667-792 439-564 (932)
116 COG5010 TadD Flp pilus assembl 98.7 3E-06 6.5E-11 77.6 20.5 163 633-799 70-232 (257)
117 TIGR03302 OM_YfiO outer membra 98.7 2E-06 4.3E-11 83.5 20.9 189 591-800 30-234 (235)
118 PLN02789 farnesyltranstransfer 98.7 1.1E-05 2.3E-10 80.5 25.5 204 604-814 47-265 (320)
119 PRK15179 Vi polysaccharide bio 98.7 7.8E-06 1.7E-10 89.9 25.9 148 661-815 83-233 (694)
120 KOG3081 Vesicle coat complex C 98.6 2.2E-05 4.7E-10 71.9 22.8 249 497-762 16-270 (299)
121 KOG1070 rRNA processing protei 98.6 2.5E-05 5.5E-10 87.2 27.5 205 523-733 1457-1668(1710)
122 PRK14720 transcript cleavage f 98.6 1.6E-05 3.4E-10 88.2 25.6 82 595-693 117-198 (906)
123 KOG1128 Uncharacterized conser 98.6 5.8E-06 1.3E-10 86.2 20.5 213 493-726 402-614 (777)
124 PF12854 PPR_1: PPR repeat 98.6 6.3E-08 1.4E-12 59.4 3.9 32 309-340 2-33 (34)
125 KOG1070 rRNA processing protei 98.6 4.2E-05 9.1E-10 85.5 26.9 230 488-721 1457-1693(1710)
126 PF12854 PPR_1: PPR repeat 98.5 1.1E-07 2.3E-12 58.4 4.0 32 344-375 2-33 (34)
127 PRK14720 transcript cleavage f 98.5 4E-05 8.7E-10 85.1 26.5 218 523-780 30-268 (906)
128 TIGR02552 LcrH_SycD type III s 98.5 4.6E-06 1E-10 72.8 15.5 115 686-804 5-120 (135)
129 COG5010 TadD Flp pilus assembl 98.5 3.7E-05 8.1E-10 70.6 20.8 160 598-761 70-229 (257)
130 PRK10370 formate-dependent nit 98.5 2.6E-05 5.6E-10 72.3 20.2 152 602-769 24-178 (198)
131 PRK15359 type III secretion sy 98.5 7.1E-06 1.5E-10 71.7 15.2 122 650-779 14-136 (144)
132 TIGR03302 OM_YfiO outer membra 98.4 2.4E-05 5.2E-10 76.0 19.7 188 556-763 30-232 (235)
133 PRK15179 Vi polysaccharide bio 98.4 7.2E-05 1.6E-09 82.5 24.8 133 592-727 84-216 (694)
134 KOG3081 Vesicle coat complex C 98.4 0.00021 4.6E-09 65.6 22.6 137 477-623 96-236 (299)
135 COG4783 Putative Zn-dependent 98.4 0.00029 6.3E-09 70.7 24.8 149 601-772 313-462 (484)
136 PF09976 TPR_21: Tetratricopep 98.3 3.5E-05 7.5E-10 67.8 15.9 126 667-796 15-145 (145)
137 COG4783 Putative Zn-dependent 98.3 0.00047 1E-08 69.3 25.0 138 640-799 317-455 (484)
138 KOG3060 Uncharacterized conser 98.3 0.0002 4.3E-09 65.2 20.3 166 643-812 26-196 (289)
139 TIGR02552 LcrH_SycD type III s 98.3 3.5E-05 7.6E-10 67.2 15.5 116 651-771 5-120 (135)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 4E-05 8.7E-10 77.9 17.2 129 665-800 170-299 (395)
141 KOG0553 TPR repeat-containing 98.2 2E-05 4.3E-10 73.8 12.3 91 709-803 91-183 (304)
142 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.5E-05 7.7E-10 65.4 12.7 106 700-805 3-112 (119)
143 PF09976 TPR_21: Tetratricopep 98.1 0.00015 3.3E-09 63.7 15.6 125 632-760 15-144 (145)
144 PF07079 DUF1347: Protein of u 98.1 0.014 3E-07 58.3 46.5 121 674-797 389-523 (549)
145 PRK15363 pathogenicity island 98.1 0.00012 2.5E-09 62.7 13.2 96 700-799 36-133 (157)
146 KOG2041 WD40 repeat protein [G 98.0 0.012 2.6E-07 61.7 29.0 156 292-479 747-903 (1189)
147 PLN03088 SGT1, suppressor of 98.0 8.3E-05 1.8E-09 76.2 14.1 89 671-762 9-98 (356)
148 PF13414 TPR_11: TPR repeat; P 98.0 2E-05 4.2E-10 59.0 6.9 66 733-800 2-69 (69)
149 cd00189 TPR Tetratricopeptide 98.0 9.8E-05 2.1E-09 59.7 11.8 97 702-800 3-99 (100)
150 COG4700 Uncharacterized protei 98.0 0.003 6.6E-08 54.7 20.0 132 626-761 86-220 (251)
151 PRK02603 photosystem I assembl 98.0 0.00029 6.3E-09 64.1 15.0 114 666-802 37-153 (172)
152 PF13432 TPR_16: Tetratricopep 98.0 2.2E-05 4.7E-10 57.9 6.2 62 739-802 2-64 (65)
153 PF12895 Apc3: Anaphase-promot 98.0 1.6E-05 3.5E-10 62.1 5.8 81 712-795 2-84 (84)
154 KOG0550 Molecular chaperone (D 98.0 0.0016 3.5E-08 63.9 20.0 154 569-727 179-349 (486)
155 COG4700 Uncharacterized protei 97.9 0.0029 6.2E-08 54.9 19.0 133 661-797 86-221 (251)
156 PRK10153 DNA-binding transcrip 97.9 0.00077 1.7E-08 72.2 19.6 140 661-804 334-488 (517)
157 KOG0550 Molecular chaperone (D 97.9 0.0018 4E-08 63.5 20.0 91 709-801 259-353 (486)
158 TIGR00756 PPR pentatricopeptid 97.9 2E-05 4.3E-10 49.4 4.6 33 351-383 2-34 (35)
159 KOG0553 TPR repeat-containing 97.9 0.00017 3.6E-09 67.8 12.2 92 675-771 92-184 (304)
160 PF07079 DUF1347: Protein of u 97.9 0.032 7E-07 55.8 48.9 135 220-360 18-178 (549)
161 KOG2041 WD40 repeat protein [G 97.9 0.033 7.2E-07 58.6 29.2 61 700-760 1022-1083(1189)
162 PF14938 SNAP: Soluble NSF att 97.9 0.0038 8.3E-08 62.0 22.4 89 673-762 123-224 (282)
163 KOG1130 Predicted G-alpha GTPa 97.9 0.00083 1.8E-08 65.5 16.5 133 666-798 197-344 (639)
164 TIGR00756 PPR pentatricopeptid 97.8 2.7E-05 5.8E-10 48.8 4.2 33 316-348 2-34 (35)
165 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.0007 1.5E-08 69.0 16.3 124 281-411 171-295 (395)
166 CHL00033 ycf3 photosystem I as 97.8 0.00055 1.2E-08 62.1 14.1 123 680-804 15-155 (168)
167 KOG1538 Uncharacterized conser 97.8 0.003 6.4E-08 65.4 20.1 101 385-514 557-657 (1081)
168 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.052 1.1E-06 54.2 34.7 134 665-802 398-535 (660)
169 PF13812 PPR_3: Pentatricopept 97.8 4.7E-05 1E-09 47.2 4.4 32 351-382 3-34 (34)
170 KOG1924 RhoA GTPase effector D 97.8 0.0041 8.9E-08 65.7 20.6 17 302-319 790-806 (1102)
171 COG4235 Cytochrome c biogenesi 97.8 0.0014 3.1E-08 62.2 15.7 121 680-805 138-263 (287)
172 PRK15363 pathogenicity island 97.7 0.001 2.2E-08 57.1 13.1 96 666-763 37-132 (157)
173 PF05843 Suf: Suppressor of fo 97.7 0.0011 2.5E-08 65.4 15.5 129 631-762 3-135 (280)
174 PF13812 PPR_3: Pentatricopept 97.7 5.7E-05 1.2E-09 46.8 4.2 33 209-241 2-34 (34)
175 PF10037 MRP-S27: Mitochondria 97.7 0.0012 2.6E-08 67.6 15.6 122 276-397 63-186 (429)
176 PF12895 Apc3: Anaphase-promot 97.7 8.3E-05 1.8E-09 58.1 5.9 81 677-760 2-84 (84)
177 PF14559 TPR_19: Tetratricopep 97.7 0.00012 2.5E-09 54.6 6.4 56 745-802 2-58 (68)
178 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00099 2.1E-08 56.4 12.9 98 666-763 4-105 (119)
179 PF14938 SNAP: Soluble NSF att 97.7 0.002 4.3E-08 64.0 16.8 125 679-805 89-232 (282)
180 PLN03088 SGT1, suppressor of 97.7 0.0011 2.5E-08 67.9 15.3 88 638-727 11-98 (356)
181 COG3898 Uncharacterized membra 97.7 0.069 1.5E-06 52.4 31.7 284 502-802 97-396 (531)
182 cd00189 TPR Tetratricopeptide 97.7 0.0009 2E-08 53.8 11.8 94 667-762 3-96 (100)
183 PRK10803 tol-pal system protei 97.6 0.00077 1.7E-08 65.1 12.7 103 701-805 145-253 (263)
184 PF12688 TPR_5: Tetratrico pep 97.6 0.0025 5.5E-08 52.8 13.8 56 707-762 9-66 (120)
185 PRK02603 photosystem I assembl 97.6 0.0033 7.2E-08 57.2 16.1 129 629-783 35-165 (172)
186 PRK10153 DNA-binding transcrip 97.6 0.0039 8.4E-08 66.9 18.6 141 626-772 334-489 (517)
187 PF08579 RPM2: Mitochondrial r 97.6 0.0014 3E-08 51.9 10.7 46 212-257 29-75 (120)
188 PF05843 Suf: Suppressor of fo 97.6 0.0012 2.7E-08 65.1 13.2 127 598-727 5-135 (280)
189 CHL00033 ycf3 photosystem I as 97.6 0.0019 4E-08 58.6 13.4 95 664-760 35-139 (168)
190 PF13371 TPR_9: Tetratricopept 97.6 0.00038 8.3E-09 52.6 7.5 64 741-806 2-66 (73)
191 PF01535 PPR: PPR repeat; Int 97.6 0.0001 2.2E-09 44.5 3.5 26 317-342 3-28 (31)
192 PF10037 MRP-S27: Mitochondria 97.6 0.00091 2E-08 68.5 12.2 118 134-254 67-184 (429)
193 PF01535 PPR: PPR repeat; Int 97.5 0.00011 2.4E-09 44.4 3.5 29 351-379 2-30 (31)
194 PRK10866 outer membrane biogen 97.5 0.026 5.6E-07 54.3 20.4 185 593-796 31-239 (243)
195 PRK15331 chaperone protein Sic 97.4 0.0075 1.6E-07 52.1 14.4 90 706-797 44-133 (165)
196 KOG1538 Uncharacterized conser 97.4 0.022 4.9E-07 59.2 19.9 94 181-304 564-657 (1081)
197 PF08579 RPM2: Mitochondrial r 97.4 0.0041 8.8E-08 49.3 11.1 75 285-359 31-114 (120)
198 KOG2796 Uncharacterized conser 97.4 0.043 9.3E-07 50.7 18.8 132 669-801 182-318 (366)
199 PRK10866 outer membrane biogen 97.4 0.13 2.7E-06 49.6 23.5 55 495-549 181-237 (243)
200 PF12688 TPR_5: Tetratrico pep 97.3 0.013 2.8E-07 48.6 14.4 92 669-762 6-103 (120)
201 PF06239 ECSIT: Evolutionarily 97.3 0.0029 6.4E-08 57.0 10.9 103 207-329 46-153 (228)
202 PF13432 TPR_16: Tetratricopep 97.3 0.001 2.3E-08 48.8 6.9 56 705-762 3-59 (65)
203 PF13414 TPR_11: TPR repeat; P 97.3 0.0012 2.7E-08 49.1 7.0 63 698-762 2-66 (69)
204 KOG1130 Predicted G-alpha GTPa 97.2 0.0027 5.9E-08 62.1 10.5 49 216-266 25-77 (639)
205 COG4235 Cytochrome c biogenesi 97.2 0.021 4.6E-07 54.5 15.8 100 661-763 153-256 (287)
206 PF06239 ECSIT: Evolutionarily 97.2 0.012 2.6E-07 53.2 12.9 102 383-503 46-152 (228)
207 KOG2796 Uncharacterized conser 97.1 0.14 3.1E-06 47.4 19.6 54 673-727 261-314 (366)
208 PF13281 DUF4071: Domain of un 97.1 0.075 1.6E-06 53.5 19.7 167 635-803 147-339 (374)
209 KOG1941 Acetylcholine receptor 97.1 0.028 6E-07 54.4 15.7 167 631-798 85-275 (518)
210 PF04840 Vps16_C: Vps16, C-ter 97.1 0.36 7.9E-06 48.3 27.6 104 353-476 181-284 (319)
211 KOG2114 Vacuolar assembly/sort 97.1 0.65 1.4E-05 50.8 28.4 180 136-340 337-516 (933)
212 PF14559 TPR_19: Tetratricopep 97.1 0.002 4.4E-08 47.8 6.5 51 711-762 3-53 (68)
213 KOG0543 FKBP-type peptidyl-pro 97.1 0.011 2.4E-07 58.6 12.9 69 736-805 259-327 (397)
214 PRK10803 tol-pal system protei 97.0 0.019 4E-07 55.7 13.9 102 665-770 144-251 (263)
215 PF13512 TPR_18: Tetratricopep 97.0 0.011 2.3E-07 50.0 10.4 57 706-762 17-75 (142)
216 PF13424 TPR_12: Tetratricopep 97.0 0.002 4.3E-08 49.4 5.9 63 736-798 7-75 (78)
217 COG1729 Uncharacterized protei 96.9 0.022 4.7E-07 53.7 13.2 106 701-807 144-253 (262)
218 PF13525 YfiO: Outer membrane 96.9 0.11 2.4E-06 48.6 18.1 57 287-343 13-71 (203)
219 KOG0543 FKBP-type peptidyl-pro 96.9 0.022 4.7E-07 56.6 13.6 100 699-801 257-358 (397)
220 COG0457 NrfG FOG: TPR repeat [ 96.9 0.46 9.9E-06 46.0 30.3 203 595-801 60-268 (291)
221 PF13525 YfiO: Outer membrane 96.8 0.31 6.7E-06 45.6 19.8 50 739-790 146-199 (203)
222 COG3898 Uncharacterized membra 96.7 0.72 1.6E-05 45.7 33.8 53 499-552 164-216 (531)
223 KOG2280 Vacuolar assembly/sort 96.7 1.3 2.7E-05 48.0 33.5 114 662-794 682-795 (829)
224 KOG2280 Vacuolar assembly/sort 96.7 1.3 2.8E-05 48.0 26.2 111 455-584 685-795 (829)
225 PF04840 Vps16_C: Vps16, C-ter 96.7 0.85 1.8E-05 45.8 29.8 110 421-550 179-288 (319)
226 PRK15331 chaperone protein Sic 96.7 0.051 1.1E-06 47.1 12.3 90 671-762 44-133 (165)
227 PF13424 TPR_12: Tetratricopep 96.6 0.0095 2.1E-07 45.6 7.2 63 700-762 6-74 (78)
228 PRK11906 transcriptional regul 96.6 0.077 1.7E-06 54.3 15.3 150 644-799 273-437 (458)
229 PF13371 TPR_9: Tetratricopept 96.6 0.014 3E-07 44.0 8.0 55 707-762 3-57 (73)
230 PF13512 TPR_18: Tetratricopep 96.6 0.098 2.1E-06 44.3 13.2 119 667-804 13-134 (142)
231 PF04184 ST7: ST7 protein; In 96.6 0.24 5.1E-06 50.9 18.1 103 703-805 263-382 (539)
232 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.012 2.5E-07 59.9 9.0 110 698-813 74-191 (453)
233 KOG1258 mRNA processing protei 96.5 1.5 3.3E-05 46.4 37.3 186 557-748 295-489 (577)
234 PF10300 DUF3808: Protein of u 96.5 0.18 3.8E-06 54.0 17.9 165 632-799 191-377 (468)
235 PRK11906 transcriptional regul 96.5 0.23 5E-06 50.9 17.4 148 609-762 273-435 (458)
236 KOG1941 Acetylcholine receptor 96.4 0.4 8.7E-06 46.8 17.9 128 599-726 127-273 (518)
237 PF13281 DUF4071: Domain of un 96.4 0.96 2.1E-05 45.8 21.4 31 733-763 304-334 (374)
238 KOG1258 mRNA processing protei 96.4 1.7 3.7E-05 46.0 36.7 186 594-783 297-489 (577)
239 KOG1586 Protein required for f 96.4 0.78 1.7E-05 42.1 20.0 96 670-767 119-226 (288)
240 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.072 1.6E-06 54.4 13.2 66 661-728 72-141 (453)
241 KOG2114 Vacuolar assembly/sort 96.3 0.98 2.1E-05 49.5 21.6 179 281-480 336-516 (933)
242 PF13428 TPR_14: Tetratricopep 96.2 0.0097 2.1E-07 39.2 4.5 35 771-805 3-37 (44)
243 KOG1585 Protein required for f 96.2 0.52 1.1E-05 43.5 16.3 202 173-407 31-250 (308)
244 PF03704 BTAD: Bacterial trans 96.2 0.084 1.8E-06 46.4 11.7 114 674-806 16-138 (146)
245 PF07719 TPR_2: Tetratricopept 96.1 0.015 3.2E-07 35.7 4.4 33 770-802 2-34 (34)
246 COG2976 Uncharacterized protei 95.9 0.53 1.1E-05 42.0 14.8 96 705-804 95-194 (207)
247 PF03704 BTAD: Bacterial trans 95.9 0.67 1.5E-05 40.6 16.1 59 352-411 65-123 (146)
248 COG3118 Thioredoxin domain-con 95.9 1.2 2.6E-05 42.7 17.8 122 638-763 143-265 (304)
249 KOG1920 IkappaB kinase complex 95.9 4.8 0.0001 46.4 26.1 108 492-619 942-1051(1265)
250 PF00515 TPR_1: Tetratricopept 95.8 0.017 3.7E-07 35.4 3.8 32 770-801 2-33 (34)
251 KOG4234 TPR repeat-containing 95.7 0.1 2.2E-06 46.3 9.3 91 709-803 105-202 (271)
252 KOG4555 TPR repeat-containing 95.7 0.19 4.1E-06 41.1 10.1 91 673-764 52-145 (175)
253 KOG2610 Uncharacterized conser 95.7 0.26 5.6E-06 47.5 12.7 154 605-761 114-274 (491)
254 COG5107 RNA14 Pre-mRNA 3'-end 95.6 3 6.5E-05 42.3 41.5 129 490-622 398-530 (660)
255 KOG1920 IkappaB kinase complex 95.6 6.1 0.00013 45.6 26.8 110 632-761 942-1053(1265)
256 PF02259 FAT: FAT domain; Int 95.5 3.7 8E-05 42.6 23.8 137 663-801 145-341 (352)
257 COG3118 Thioredoxin domain-con 95.4 1.1 2.4E-05 43.0 15.9 140 671-814 141-282 (304)
258 PF10300 DUF3808: Protein of u 95.4 1.1 2.3E-05 48.2 18.1 25 563-587 192-216 (468)
259 COG0457 NrfG FOG: TPR repeat [ 95.4 2.7 5.9E-05 40.3 32.7 200 560-763 60-265 (291)
260 COG1729 Uncharacterized protei 95.3 0.36 7.9E-06 45.7 12.3 97 666-763 144-244 (262)
261 COG4649 Uncharacterized protei 95.3 1.6 3.5E-05 38.0 14.9 123 675-797 69-195 (221)
262 PF13428 TPR_14: Tetratricopep 95.3 0.058 1.2E-06 35.5 5.1 39 736-776 3-42 (44)
263 smart00299 CLH Clathrin heavy 95.2 1.4 3.1E-05 38.2 15.5 43 319-362 12-54 (140)
264 KOG1550 Extracellular protein 95.2 6.3 0.00014 43.5 27.5 182 608-803 342-543 (552)
265 PF12921 ATP13: Mitochondrial 95.2 0.29 6.3E-06 41.1 10.2 48 346-393 49-97 (126)
266 smart00299 CLH Clathrin heavy 95.0 1.3 2.9E-05 38.4 14.7 43 213-256 12-54 (140)
267 KOG2610 Uncharacterized conser 95.0 0.63 1.4E-05 45.0 12.8 155 570-727 114-275 (491)
268 PF12921 ATP13: Mitochondrial 94.8 0.44 9.4E-06 40.1 10.5 78 385-462 3-96 (126)
269 COG4105 ComL DNA uptake lipopr 94.8 3.7 8E-05 38.8 22.1 63 739-802 172-237 (254)
270 KOG4648 Uncharacterized conser 94.8 0.13 2.8E-06 49.6 7.8 92 708-802 106-198 (536)
271 PF13431 TPR_17: Tetratricopep 94.8 0.032 7E-07 34.1 2.7 31 757-789 2-33 (34)
272 PF04053 Coatomer_WDAD: Coatom 94.8 0.84 1.8E-05 48.1 14.7 154 324-513 271-426 (443)
273 KOG4555 TPR repeat-containing 94.7 0.72 1.6E-05 37.9 10.7 91 638-729 52-145 (175)
274 KOG3941 Intermediate in Toll s 94.6 0.34 7.5E-06 45.5 9.8 98 223-340 87-185 (406)
275 PF13176 TPR_7: Tetratricopept 94.5 0.034 7.3E-07 34.6 2.4 26 772-797 2-27 (36)
276 KOG2062 26S proteasome regulat 94.5 8.8 0.00019 41.8 38.8 156 216-378 67-239 (929)
277 KOG1585 Protein required for f 94.5 4.1 8.8E-05 37.9 20.1 52 527-579 193-247 (308)
278 COG4105 ComL DNA uptake lipopr 94.4 4.5 9.8E-05 38.2 22.9 53 291-343 46-100 (254)
279 PF04184 ST7: ST7 protein; In 94.4 3.2 7E-05 43.0 17.0 63 315-377 260-323 (539)
280 PF09205 DUF1955: Domain of un 94.3 2.6 5.7E-05 34.9 14.8 139 641-801 14-152 (161)
281 COG2909 MalT ATP-dependent tra 94.3 12 0.00025 42.1 25.5 204 599-802 420-651 (894)
282 PF09205 DUF1955: Domain of un 94.1 3 6.5E-05 34.6 14.5 64 456-520 88-151 (161)
283 PF13181 TPR_8: Tetratricopept 94.0 0.094 2E-06 32.0 3.7 32 770-801 2-33 (34)
284 PF08631 SPO22: Meiosis protei 93.9 7.3 0.00016 38.6 26.3 16 464-479 256-271 (278)
285 PF04053 Coatomer_WDAD: Coatom 93.8 0.78 1.7E-05 48.4 12.1 100 324-444 328-427 (443)
286 COG4649 Uncharacterized protei 93.8 4.3 9.3E-05 35.6 14.3 123 571-693 70-196 (221)
287 PF13170 DUF4003: Protein of u 93.8 7.8 0.00017 38.5 20.2 48 366-413 79-132 (297)
288 COG0790 FOG: TPR repeat, SEL1 93.7 8.3 0.00018 38.6 25.1 158 643-810 91-278 (292)
289 COG1747 Uncharacterized N-term 93.7 10 0.00022 39.5 22.9 165 591-763 63-234 (711)
290 KOG3364 Membrane protein invol 93.6 1.6 3.4E-05 36.3 10.7 74 731-805 29-107 (149)
291 PF13170 DUF4003: Protein of u 93.5 8.8 0.00019 38.1 19.0 126 296-423 79-221 (297)
292 PF10602 RPN7: 26S proteasome 93.4 1.2 2.6E-05 40.3 11.1 94 351-446 38-140 (177)
293 PF02259 FAT: FAT domain; Int 93.3 11 0.00024 38.9 21.4 108 698-805 145-294 (352)
294 PF08631 SPO22: Meiosis protei 93.3 9.2 0.0002 37.9 26.0 21 776-796 253-273 (278)
295 COG3629 DnrI DNA-binding trans 93.3 0.92 2E-05 43.9 10.6 76 699-775 153-233 (280)
296 KOG2471 TPR repeat-containing 93.2 1.8 3.8E-05 44.4 12.6 111 671-782 247-382 (696)
297 PF07035 Mic1: Colon cancer-as 93.2 5.8 0.00013 35.2 14.8 130 268-411 18-147 (167)
298 PF10602 RPN7: 26S proteasome 93.2 2.7 5.9E-05 38.0 13.0 98 699-796 36-140 (177)
299 KOG3941 Intermediate in Toll s 93.2 0.95 2.1E-05 42.7 9.9 87 398-504 86-173 (406)
300 PF09613 HrpB1_HrpK: Bacterial 93.0 4.8 0.0001 35.1 13.4 118 665-790 8-130 (160)
301 COG2976 Uncharacterized protei 93.0 6.1 0.00013 35.6 14.2 94 669-764 94-189 (207)
302 PF02284 COX5A: Cytochrome c o 92.8 1.9 4.1E-05 33.9 9.4 77 737-814 11-89 (108)
303 COG3947 Response regulator con 92.8 8.2 0.00018 37.0 15.4 69 736-806 281-355 (361)
304 PF10345 Cohesin_load: Cohesin 92.8 20 0.00044 40.3 43.8 166 280-446 60-252 (608)
305 PF04097 Nic96: Nup93/Nic96; 92.7 20 0.00044 40.2 23.5 43 284-327 116-158 (613)
306 PF13176 TPR_7: Tetratricopept 92.7 0.27 5.9E-06 30.5 4.2 27 736-762 1-27 (36)
307 KOG1550 Extracellular protein 92.6 19 0.00042 39.8 26.1 77 679-763 454-538 (552)
308 PF13174 TPR_6: Tetratricopept 92.6 0.21 4.6E-06 30.1 3.6 30 772-801 3-32 (33)
309 PF00515 TPR_1: Tetratricopept 92.2 0.36 7.8E-06 29.4 4.3 27 736-762 3-29 (34)
310 PF14853 Fis1_TPR_C: Fis1 C-te 92.1 0.5 1.1E-05 32.3 5.2 34 772-805 4-37 (53)
311 KOG1923 Rac1 GTPase effector F 92.1 0.25 5.4E-06 53.1 5.5 9 11-19 279-287 (830)
312 PF06552 TOM20_plant: Plant sp 92.0 1.6 3.6E-05 38.6 9.4 95 680-779 7-123 (186)
313 PF07719 TPR_2: Tetratricopept 91.8 0.42 9.1E-06 29.0 4.3 27 736-762 3-29 (34)
314 KOG4234 TPR repeat-containing 91.0 3.9 8.5E-05 36.7 10.7 92 672-768 103-200 (271)
315 PF09986 DUF2225: Uncharacteri 91.0 3.5 7.6E-05 38.6 11.4 104 712-818 90-211 (214)
316 PF06552 TOM20_plant: Plant sp 90.8 2.2 4.7E-05 37.8 9.0 110 645-765 7-138 (186)
317 KOG2066 Vacuolar assembly/sort 90.8 30 0.00066 38.3 28.7 171 179-377 362-533 (846)
318 cd00923 Cyt_c_Oxidase_Va Cytoc 90.7 5.7 0.00012 31.0 9.9 65 749-814 22-86 (103)
319 TIGR02561 HrpB1_HrpK type III 90.6 7.9 0.00017 33.2 11.8 50 675-728 21-73 (153)
320 PF10345 Cohesin_load: Cohesin 90.4 35 0.00076 38.4 43.8 187 294-481 36-252 (608)
321 PRK09687 putative lyase; Provi 90.2 20 0.00044 35.4 27.9 125 662-800 140-265 (280)
322 COG3947 Response regulator con 90.1 19 0.00041 34.8 16.1 54 321-375 286-339 (361)
323 COG4785 NlpI Lipoprotein NlpI, 89.9 16 0.00034 33.6 20.2 187 604-802 75-270 (297)
324 COG3629 DnrI DNA-binding trans 89.9 3.7 8E-05 39.8 10.6 72 316-388 155-231 (280)
325 PF13431 TPR_17: Tetratricopep 89.6 0.47 1E-05 28.9 2.9 22 733-754 12-33 (34)
326 COG4455 ImpE Protein of avirul 89.3 2.6 5.6E-05 38.4 8.3 58 704-762 6-63 (273)
327 COG0790 FOG: TPR repeat, SEL1 89.2 26 0.00056 35.1 23.4 120 644-770 128-273 (292)
328 TIGR03504 FimV_Cterm FimV C-te 89.0 0.63 1.4E-05 30.3 3.3 25 774-798 4-28 (44)
329 KOG0276 Vesicle coat complex C 88.8 4.8 0.0001 42.6 11.0 147 327-513 599-745 (794)
330 PF11207 DUF2989: Protein of u 88.8 13 0.00027 34.0 12.4 81 709-791 117-200 (203)
331 KOG4570 Uncharacterized conser 88.7 6.3 0.00014 38.2 10.9 105 202-309 58-165 (418)
332 KOG0403 Neoplastic transformat 88.2 34 0.00073 35.2 28.2 74 668-746 513-586 (645)
333 PF13374 TPR_10: Tetratricopep 88.2 0.97 2.1E-05 29.0 4.0 28 770-797 3-30 (42)
334 smart00028 TPR Tetratricopepti 87.8 0.93 2E-05 26.6 3.6 31 771-801 3-33 (34)
335 PF07035 Mic1: Colon cancer-as 87.6 20 0.00043 31.9 15.9 57 317-377 92-148 (167)
336 COG1747 Uncharacterized N-term 87.3 42 0.0009 35.3 25.6 162 525-693 67-234 (711)
337 KOG0292 Vesicle coat complex C 87.1 58 0.0013 36.8 22.1 108 709-816 1001-1131(1202)
338 PF09613 HrpB1_HrpK: Bacterial 87.1 20 0.00044 31.4 13.8 70 184-256 21-90 (160)
339 KOG4642 Chaperone-dependent E3 86.6 13 0.00027 34.8 11.0 81 641-725 22-104 (284)
340 COG5178 PRP8 U5 snRNP spliceos 86.3 0.58 1.3E-05 52.5 3.2 15 5-19 2-16 (2365)
341 KOG4642 Chaperone-dependent E3 86.1 7.3 0.00016 36.2 9.3 120 672-795 18-143 (284)
342 KOG2066 Vacuolar assembly/sort 86.0 63 0.0014 36.1 27.2 73 391-469 363-438 (846)
343 KOG1464 COP9 signalosome, subu 85.9 32 0.0007 32.6 17.5 49 293-341 41-92 (440)
344 PF13181 TPR_8: Tetratricopept 85.4 1.6 3.4E-05 26.4 3.6 27 736-762 3-29 (34)
345 KOG4648 Uncharacterized conser 85.4 6.2 0.00013 38.6 9.0 90 636-727 104-193 (536)
346 KOG0276 Vesicle coat complex C 85.3 13 0.00028 39.7 11.8 132 281-445 616-747 (794)
347 KOG4077 Cytochrome c oxidase, 84.9 17 0.00038 29.9 9.8 62 752-814 67-128 (149)
348 cd00923 Cyt_c_Oxidase_Va Cytoc 84.5 7.9 0.00017 30.2 7.4 45 717-761 25-69 (103)
349 PRK10941 hypothetical protein; 84.5 10 0.00022 36.9 10.4 77 737-815 184-262 (269)
350 PF13374 TPR_10: Tetratricopep 84.3 2.5 5.5E-05 27.0 4.5 26 701-726 4-29 (42)
351 COG2909 MalT ATP-dependent tra 84.1 83 0.0018 35.8 29.4 225 430-654 426-684 (894)
352 KOG4507 Uncharacterized conser 84.0 4.4 9.6E-05 42.7 7.9 95 710-805 618-712 (886)
353 KOG0545 Aryl-hydrocarbon recep 83.8 22 0.00048 33.3 11.3 72 736-809 232-304 (329)
354 KOG2063 Vacuolar assembly/sort 83.6 93 0.002 36.0 23.5 28 456-483 506-533 (877)
355 KOG0687 26S proteasome regulat 83.6 48 0.001 32.7 16.5 97 349-447 104-209 (393)
356 PRK11619 lytic murein transgly 83.3 86 0.0019 35.4 38.6 413 324-795 43-465 (644)
357 PF04097 Nic96: Nup93/Nic96; 83.3 85 0.0018 35.3 22.6 88 355-447 264-355 (613)
358 PF00637 Clathrin: Region in C 83.3 0.029 6.2E-07 49.2 -7.0 52 322-373 15-66 (143)
359 PF11207 DUF2989: Protein of u 82.8 12 0.00026 34.1 9.3 71 472-543 124-197 (203)
360 KOG4570 Uncharacterized conser 82.5 14 0.0003 36.0 9.9 99 135-237 66-164 (418)
361 COG4785 NlpI Lipoprotein NlpI, 82.5 41 0.00088 31.0 18.4 159 594-763 99-266 (297)
362 KOG2396 HAT (Half-A-TPR) repea 81.5 76 0.0016 33.5 38.7 99 696-796 456-557 (568)
363 PF02284 COX5A: Cytochrome c o 81.3 9.8 0.00021 30.1 7.0 46 717-762 28-73 (108)
364 PF13174 TPR_6: Tetratricopept 80.7 2.4 5.2E-05 25.3 3.1 26 737-762 3-28 (33)
365 PF07721 TPR_4: Tetratricopept 79.2 2.8 6.1E-05 23.6 2.8 21 773-793 5-25 (26)
366 KOG0403 Neoplastic transformat 78.4 87 0.0019 32.4 18.9 61 423-484 513-573 (645)
367 PRK15180 Vi polysaccharide bio 78.2 92 0.002 32.5 30.8 121 325-449 300-421 (831)
368 KOG3364 Membrane protein invol 78.1 41 0.00089 28.4 10.5 24 739-762 76-99 (149)
369 PF07575 Nucleopor_Nup85: Nup8 77.9 73 0.0016 35.5 15.6 24 208-232 149-172 (566)
370 PRK09687 putative lyase; Provi 77.8 77 0.0017 31.4 28.7 121 418-552 141-262 (280)
371 COG5187 RPN7 26S proteasome re 77.6 71 0.0015 30.9 13.1 160 651-812 60-235 (412)
372 KOG4507 Uncharacterized conser 77.6 9.1 0.0002 40.5 7.6 131 646-780 590-721 (886)
373 TIGR02561 HrpB1_HrpK type III 76.7 49 0.0011 28.6 12.5 53 185-238 22-74 (153)
374 TIGR03504 FimV_Cterm FimV C-te 76.2 5.7 0.00012 26.0 3.8 23 320-342 5-27 (44)
375 PF09986 DUF2225: Uncharacteri 76.2 55 0.0012 30.8 12.0 25 704-728 170-194 (214)
376 TIGR02508 type_III_yscG type I 75.4 25 0.00053 27.8 7.5 51 323-379 48-98 (115)
377 KOG2062 26S proteasome regulat 75.2 1.4E+02 0.0031 33.2 37.0 120 602-727 509-634 (929)
378 KOG2063 Vacuolar assembly/sort 74.8 1.7E+02 0.0037 34.0 26.1 62 176-237 310-375 (877)
379 PF08424 NRDE-2: NRDE-2, neces 74.2 1.1E+02 0.0023 31.2 19.7 119 645-765 47-185 (321)
380 PF14853 Fis1_TPR_C: Fis1 C-te 74.0 12 0.00026 25.7 5.1 30 738-769 5-34 (53)
381 PF04910 Tcf25: Transcriptiona 73.9 1.1E+02 0.0025 31.5 17.9 96 705-802 109-226 (360)
382 COG4976 Predicted methyltransf 73.3 6.9 0.00015 36.1 4.9 51 710-762 6-57 (287)
383 COG4941 Predicted RNA polymera 72.2 82 0.0018 31.3 11.9 124 680-806 272-402 (415)
384 PF07163 Pex26: Pex26 protein; 71.8 1E+02 0.0022 29.9 12.9 87 671-757 90-181 (309)
385 KOG2396 HAT (Half-A-TPR) repea 71.6 1.4E+02 0.0031 31.6 40.7 92 668-762 464-558 (568)
386 KOG0890 Protein kinase of the 71.6 3.1E+02 0.0068 35.5 34.9 322 459-801 1388-1734(2382)
387 PF00637 Clathrin: Region in C 71.3 1.4 3.1E-05 38.4 0.3 84 285-375 13-96 (143)
388 KOG0890 Protein kinase of the 71.2 3.2E+02 0.007 35.5 36.5 104 699-806 1670-1792(2382)
389 smart00028 TPR Tetratricopepti 70.9 8.8 0.00019 21.9 3.9 27 736-762 3-29 (34)
390 PF07575 Nucleopor_Nup85: Nup8 70.7 1.7E+02 0.0038 32.6 16.3 26 349-375 149-174 (566)
391 PF07720 TPR_3: Tetratricopept 70.7 14 0.0003 22.9 4.4 29 772-800 4-34 (36)
392 KOG0376 Serine-threonine phosp 70.7 5.9 0.00013 41.0 4.4 103 671-779 11-115 (476)
393 KOG0545 Aryl-hydrocarbon recep 70.0 35 0.00076 32.1 8.6 49 770-819 231-279 (329)
394 KOG2391 Vacuolar sorting prote 69.5 1.2E+02 0.0027 30.0 14.3 53 204-257 295-347 (365)
395 PF14689 SPOB_a: Sensor_kinase 69.2 12 0.00025 26.8 4.5 30 733-762 22-51 (62)
396 PF10579 Rapsyn_N: Rapsyn N-te 68.9 15 0.00033 27.5 4.9 44 677-720 19-64 (80)
397 PF10579 Rapsyn_N: Rapsyn N-te 68.7 18 0.00039 27.1 5.3 49 746-794 18-68 (80)
398 KOG1464 COP9 signalosome, subu 68.1 1.2E+02 0.0025 29.2 19.4 208 519-726 21-258 (440)
399 COG4455 ImpE Protein of avirul 67.9 69 0.0015 29.7 9.8 123 667-802 4-138 (273)
400 KOG2471 TPR repeat-containing 67.6 1.7E+02 0.0037 30.9 23.9 38 533-571 344-381 (696)
401 KOG0128 RNA-binding protein SA 66.1 2.4E+02 0.0052 32.1 36.1 108 680-788 442-553 (881)
402 PF11846 DUF3366: Domain of un 65.9 17 0.00037 33.6 6.2 36 765-800 140-175 (193)
403 PF14669 Asp_Glu_race_2: Putat 65.6 1.1E+02 0.0023 27.8 14.2 54 635-688 138-205 (233)
404 PF04190 DUF410: Protein of un 65.1 1.4E+02 0.0031 29.1 20.0 103 326-443 2-114 (260)
405 KOG2297 Predicted translation 65.1 1.5E+02 0.0032 29.2 15.7 20 419-438 321-340 (412)
406 PHA02537 M terminase endonucle 64.9 1.3E+02 0.0027 28.6 11.4 110 674-808 93-217 (230)
407 PF12862 Apc5: Anaphase-promot 64.9 25 0.00054 27.8 6.1 53 710-762 9-69 (94)
408 KOG1586 Protein required for f 64.6 1.3E+02 0.0028 28.4 23.6 183 499-727 24-223 (288)
409 KOG0551 Hsp90 co-chaperone CNS 63.4 53 0.0011 32.6 8.8 100 661-762 76-181 (390)
410 TIGR02508 type_III_yscG type I 63.4 74 0.0016 25.3 8.8 51 358-414 48-98 (115)
411 PF07163 Pex26: Pex26 protein; 63.0 96 0.0021 30.1 10.2 57 391-447 90-146 (309)
412 PF09670 Cas_Cas02710: CRISPR- 62.4 1.2E+02 0.0025 31.8 12.1 55 638-693 140-198 (379)
413 PF12862 Apc5: Anaphase-promot 62.0 59 0.0013 25.6 7.8 53 675-727 9-69 (94)
414 KOG4077 Cytochrome c oxidase, 61.7 65 0.0014 26.8 7.6 44 719-762 69-112 (149)
415 KOG2659 LisH motif-containing 61.5 1.4E+02 0.0031 28.0 11.9 63 661-725 23-90 (228)
416 PRK11619 lytic murein transgly 60.7 2.9E+02 0.0064 31.3 39.1 333 280-657 35-374 (644)
417 PF13929 mRNA_stabil: mRNA sta 60.4 1.8E+02 0.0038 28.6 17.6 65 380-444 198-263 (292)
418 PF10255 Paf67: RNA polymerase 59.7 1E+02 0.0023 32.1 10.8 62 701-762 124-192 (404)
419 PHA02875 ankyrin repeat protei 59.7 2.2E+02 0.0049 30.1 14.3 16 322-337 73-88 (413)
420 KOG1308 Hsp70-interacting prot 59.5 13 0.00028 36.8 4.1 88 677-767 127-215 (377)
421 KOG2581 26S proteasome regulat 59.5 2.2E+02 0.0047 29.4 14.6 95 706-804 176-282 (493)
422 KOG3824 Huntingtin interacting 58.1 37 0.0008 33.0 6.7 61 744-806 126-187 (472)
423 KOG2391 Vacuolar sorting prote 58.1 48 0.001 32.7 7.5 55 172-227 298-352 (365)
424 KOG0551 Hsp90 co-chaperone CNS 58.0 1.3E+02 0.0029 29.9 10.5 96 629-726 81-180 (390)
425 COG5159 RPN6 26S proteasome re 57.9 1.9E+02 0.0041 28.2 19.5 92 181-272 11-113 (421)
426 KOG2908 26S proteasome regulat 56.8 1.7E+02 0.0037 29.3 11.0 75 672-746 83-168 (380)
427 PRK12798 chemotaxis protein; R 56.6 2.5E+02 0.0055 29.2 19.8 194 606-806 124-332 (421)
428 KOG2422 Uncharacterized conser 56.4 3E+02 0.0064 30.0 16.9 94 707-800 350-450 (665)
429 PF13929 mRNA_stabil: mRNA sta 56.3 2.1E+02 0.0045 28.2 17.5 66 484-549 197-263 (292)
430 PF14689 SPOB_a: Sensor_kinase 55.2 27 0.00059 25.0 4.2 47 749-797 5-51 (62)
431 KOG0376 Serine-threonine phosp 55.1 26 0.00057 36.5 5.7 103 636-744 11-115 (476)
432 PF09477 Type_III_YscG: Bacter 54.0 1.2E+02 0.0025 24.6 8.4 77 294-377 21-97 (116)
433 PF09670 Cas_Cas02710: CRISPR- 53.5 1.6E+02 0.0034 30.8 11.3 57 601-658 138-198 (379)
434 PHA02940 hypothetical protein; 53.3 2E+02 0.0043 27.1 14.0 75 736-818 144-218 (315)
435 PF10366 Vps39_1: Vacuolar sor 52.9 59 0.0013 26.5 6.4 26 352-377 42-67 (108)
436 PF14561 TPR_20: Tetratricopep 52.2 91 0.002 24.4 7.1 60 754-815 8-69 (90)
437 KOG4279 Serine/threonine prote 51.6 3.6E+02 0.0078 30.4 13.3 23 780-802 377-399 (1226)
438 KOG2297 Predicted translation 51.4 2.5E+02 0.0055 27.7 19.8 20 490-509 322-341 (412)
439 cd00280 TRFH Telomeric Repeat 50.7 1.1E+02 0.0025 27.5 8.0 48 715-762 85-139 (200)
440 PF08424 NRDE-2: NRDE-2, neces 49.6 3E+02 0.0065 28.0 18.8 120 680-801 47-186 (321)
441 PF11848 DUF3368: Domain of un 49.3 60 0.0013 21.7 4.9 31 291-321 14-44 (48)
442 cd08819 CARD_MDA5_2 Caspase ac 48.0 1.3E+02 0.0028 23.3 6.9 36 501-541 48-83 (88)
443 smart00386 HAT HAT (Half-A-TPR 47.5 42 0.00091 19.4 3.8 18 783-800 1-18 (33)
444 KOG4825 Component of synaptic 47.1 28 0.00061 35.5 4.3 6 11-16 274-279 (666)
445 PF11817 Foie-gras_1: Foie gra 47.0 1.1E+02 0.0024 29.7 8.5 54 739-792 183-241 (247)
446 PRK15180 Vi polysaccharide bio 46.1 3.9E+02 0.0083 28.3 29.4 120 291-414 301-421 (831)
447 cd00280 TRFH Telomeric Repeat 46.0 1.5E+02 0.0033 26.8 8.0 49 679-727 84-139 (200)
448 PF08311 Mad3_BUB1_I: Mad3/BUB 45.7 1.9E+02 0.004 24.5 12.4 80 713-795 40-125 (126)
449 PRK10564 maltose regulon perip 45.1 49 0.0011 32.5 5.5 34 774-807 262-295 (303)
450 PRK13342 recombination factor 45.0 4.1E+02 0.0088 28.2 19.8 47 352-398 230-279 (413)
451 PF11848 DUF3368: Domain of un 44.8 92 0.002 20.8 5.3 27 362-388 15-41 (48)
452 KOG1308 Hsp70-interacting prot 44.7 35 0.00075 34.0 4.4 90 641-733 126-216 (377)
453 KOG0687 26S proteasome regulat 44.6 3.4E+02 0.0073 27.2 18.5 97 699-797 104-209 (393)
454 COG5159 RPN6 26S proteasome re 43.4 3.2E+02 0.007 26.6 21.1 49 355-403 9-64 (421)
455 PF06957 COPI_C: Coatomer (COP 41.9 75 0.0016 33.2 6.6 33 772-804 303-335 (422)
456 KOG0991 Replication factor C, 41.6 3.1E+02 0.0068 26.0 12.4 138 632-779 133-282 (333)
457 PHA02875 ankyrin repeat protei 41.4 4.5E+02 0.0099 27.8 14.7 116 286-418 106-229 (413)
458 PF11663 Toxin_YhaV: Toxin wit 40.7 24 0.00053 29.6 2.4 34 217-252 104-137 (140)
459 PF11846 DUF3366: Domain of un 40.4 1.3E+02 0.0029 27.7 7.7 33 730-762 140-172 (193)
460 PF11817 Foie-gras_1: Foie gra 40.3 1.5E+02 0.0033 28.6 8.4 57 704-760 183-244 (247)
461 PF08311 Mad3_BUB1_I: Mad3/BUB 39.8 2.3E+02 0.005 23.9 10.5 42 191-232 81-123 (126)
462 PF02184 HAT: HAT (Half-A-TPR) 39.6 70 0.0015 19.2 3.5 24 750-775 3-26 (32)
463 PF13762 MNE1: Mitochondrial s 39.2 1.6E+02 0.0036 25.5 7.2 85 136-220 42-127 (145)
464 PF04190 DUF410: Protein of un 38.8 3.8E+02 0.0083 26.2 19.6 25 278-302 89-113 (260)
465 PRK07003 DNA polymerase III su 38.7 6.8E+02 0.015 29.0 15.2 85 644-731 179-277 (830)
466 KOG0889 Histone acetyltransfer 38.4 1.3E+03 0.028 32.1 27.4 412 361-798 2392-2841(3550)
467 PRK10564 maltose regulon perip 38.2 66 0.0014 31.6 5.2 30 317-346 260-289 (303)
468 PF04762 IKI3: IKI3 family; I 38.0 4.2E+02 0.0092 31.7 12.8 197 213-410 699-927 (928)
469 PF15297 CKAP2_C: Cytoskeleton 37.7 3.6E+02 0.0077 27.4 10.1 63 716-780 120-186 (353)
470 TIGR02710 CRISPR-associated pr 37.6 4.9E+02 0.011 27.1 12.1 53 637-689 138-196 (380)
471 KOG2659 LisH motif-containing 37.6 3.5E+02 0.0077 25.5 9.5 98 627-726 24-130 (228)
472 PF15469 Sec5: Exocyst complex 37.5 3.2E+02 0.0069 24.9 12.1 24 783-806 153-176 (182)
473 PF15297 CKAP2_C: Cytoskeleton 36.7 4.3E+02 0.0094 26.8 10.5 64 680-745 119-186 (353)
474 COG5191 Uncharacterized conser 36.6 1.1E+02 0.0024 30.1 6.3 80 733-814 106-187 (435)
475 PF04910 Tcf25: Transcriptiona 36.6 5E+02 0.011 26.9 21.9 211 318-537 14-272 (360)
476 PRK15313 autotransport protein 36.6 44 0.00096 38.3 4.3 45 7-51 558-602 (955)
477 PF10516 SHNi-TPR: SHNi-TPR; 36.3 61 0.0013 20.4 3.1 30 769-798 1-30 (38)
478 PF11663 Toxin_YhaV: Toxin wit 35.3 42 0.00092 28.3 3.0 32 326-359 107-138 (140)
479 PF00244 14-3-3: 14-3-3 protei 34.7 4.2E+02 0.0091 25.4 13.4 184 597-797 4-197 (236)
480 PF10366 Vps39_1: Vacuolar sor 34.3 2.6E+02 0.0056 22.8 8.6 87 212-329 3-94 (108)
481 KOG3397 Acetyltransferases [Ge 34.0 55 0.0012 28.7 3.5 51 2-52 158-208 (225)
482 KOG1103 Predicted coiled-coil 34.0 72 0.0016 31.2 4.7 60 2-61 395-454 (561)
483 smart00777 Mad3_BUB1_I Mad3/BU 33.6 2.9E+02 0.0064 23.3 9.6 74 680-758 49-123 (125)
484 PF13762 MNE1: Mitochondrial s 33.2 3.3E+02 0.0071 23.7 12.4 114 430-571 5-127 (145)
485 PHA03211 serine/threonine kina 33.0 50 0.0011 35.7 4.0 49 6-54 22-70 (461)
486 cd02680 MIT_calpain7_2 MIT: do 32.9 76 0.0016 23.8 3.7 34 749-798 2-35 (75)
487 PRK09857 putative transposase; 32.8 3.1E+02 0.0067 27.4 9.2 100 670-771 178-277 (292)
488 KOG1839 Uncharacterized protei 32.6 5.5E+02 0.012 31.2 12.1 158 287-444 940-1124(1236)
489 PRK09857 putative transposase; 32.5 4.7E+02 0.01 26.1 10.4 104 281-386 174-277 (292)
490 smart00777 Mad3_BUB1_I Mad3/BU 32.5 3.1E+02 0.0067 23.2 9.2 75 715-794 49-124 (125)
491 KOG2300 Uncharacterized conser 32.4 6.5E+02 0.014 26.9 37.3 387 425-814 13-488 (629)
492 KOG3779 Homeobox transcription 32.2 2E+02 0.0044 29.5 7.6 93 3-95 437-541 (737)
493 PRK10941 hypothetical protein; 31.6 5.1E+02 0.011 25.5 10.9 86 629-715 181-267 (269)
494 COG4941 Predicted RNA polymera 31.5 5.6E+02 0.012 25.9 12.1 121 645-770 272-399 (415)
495 KOG0686 COP9 signalosome, subu 31.3 6.2E+02 0.014 26.4 15.1 181 489-672 150-352 (466)
496 KOG3807 Predicted membrane pro 31.2 5.5E+02 0.012 25.7 13.1 164 634-811 189-354 (556)
497 KOG0559 Dihydrolipoamide succi 31.2 1E+02 0.0022 30.8 5.2 50 2-51 163-214 (457)
498 KOG0686 COP9 signalosome, subu 31.1 6.3E+02 0.014 26.3 15.9 179 351-532 152-352 (466)
499 KOG1922 Rho GTPase effector BN 30.5 1.6E+02 0.0035 34.8 8.1 87 5-94 314-408 (833)
500 PF01213 CAP_N: Adenylate cycl 30.3 17 0.00037 36.2 0.0 21 2-22 227-247 (312)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.1e-82 Score=729.54 Aligned_cols=651 Identities=19% Similarity=0.310 Sum_probs=617.0
Q ss_pred hcHHHHHHhhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 003451 134 ADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTS 213 (819)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 213 (819)
.....++..++..|+++.|+.+|+.+.+. +...+..+|..++..|.+.+.++.|.+++..+.+.+..++...++.
T Consensus 52 ~~~n~~i~~l~~~g~~~~A~~l~~~m~~~-----g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 52 HDSNSQLRALCSHGQLEQALKLLESMQEL-----RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 34566778888999999999999999772 3345777899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 003451 214 LITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGS 293 (819)
Q Consensus 214 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 293 (819)
++.+|++.|+++.|..+|++|. .||+.+||.+|.+|++.| ++++|.++|++|...|+.||..||++++.+|+..+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g-~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAG-YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 9999999999999999999996 469999999999999999 89999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 003451 294 LHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKT 373 (819)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 373 (819)
+.+.+.+++..|.+.|+.||..+||+|+.+|++.|++++|.++|++| ..+|.++||++|.+|++.|++++|+++|.
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m----~~~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC----CCCCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 45799999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 003451 374 QMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPD 453 (819)
Q Consensus 374 ~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 453 (819)
+|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++++.+|++.|++++|.++|++|. .||
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d 353 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKD 353 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 578
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003451 454 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAA 533 (819)
Q Consensus 454 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 533 (819)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.++..+|+.|+.+
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHH
Q 003451 534 LARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDT 613 (819)
Q Consensus 534 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 613 (819)
|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+.+|++|.. ++.|+..++..++.+|++.|+++.+
T Consensus 434 y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~ 508 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCG 508 (857)
T ss_pred HHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHh
Confidence 9999999999999999974 5788999999999999999999999999986 4899999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003451 614 ERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK 693 (819)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 693 (819)
.+++..+.+.|+.+|..+++.|+++|++.|++++|.++|+.+ .+|..+|++++.+|++.|+.++|.++|++|.+.
T Consensus 509 ~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~ 583 (857)
T PLN03077 509 KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583 (857)
T ss_pred HHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999987 589999999999999999999999999999999
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003451 694 GIKPDIISYNTVIFAYCRNGRMKEASRIFSEMR-DSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTY 772 (819)
Q Consensus 694 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 772 (819)
|+.||..+|+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++.+|++.|++++|.+++++|. ++||..+|
T Consensus 584 g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~ 660 (857)
T PLN03077 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVW 660 (857)
T ss_pred CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHH
Confidence 999999999999999999999999999999999 67999999999999999999999999999999983 78999999
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Q 003451 773 NSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAK 816 (819)
Q Consensus 773 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~~ 816 (819)
..|+.+|...|+.+.|....+++.+++|++. ..|..|...+++
T Consensus 661 ~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~-~~y~ll~n~ya~ 703 (857)
T PLN03077 661 GALLNACRIHRHVELGELAAQHIFELDPNSV-GYYILLCNLYAD 703 (857)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCc-chHHHHHHHHHH
Confidence 9999999999999999999999999999864 445555555543
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.8e-79 Score=706.67 Aligned_cols=639 Identities=19% Similarity=0.248 Sum_probs=607.3
Q ss_pred CchhcHHHHHHhhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH
Q 003451 131 DLGADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYA 210 (819)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 210 (819)
.....+..+++.+...+..+.|..++..+... +...+..+++.++..|++.|+++.|.++|++|.+ +|..+
T Consensus 84 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~ 154 (857)
T PLN03077 84 VDEDAYVALFRLCEWKRAVEEGSRVCSRALSS-----HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFS 154 (857)
T ss_pred CChhHHHHHHHHHhhCCCHHHHHHHHHHHHHc-----CCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeE
Confidence 34455777888888889999999999988762 2235677899999999999999999999999975 48899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003451 211 YTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCR 290 (819)
Q Consensus 211 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 290 (819)
|+.+|.+|++.|++++|..+|++|...|+.||..||+.++.++++.+ ++..+.+++..|.+.|+.||..+|+.|+.+|+
T Consensus 155 ~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~ 233 (857)
T PLN03077 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP-DLARGREVHAHVVRFGFELDVDVVNALITMYV 233 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc-chhhHHHHHHHHHHcCCCcccchHhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 003451 291 RGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAME 370 (819)
Q Consensus 291 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 370 (819)
+.|++++|.++|++|.. +|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+
T Consensus 234 k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 234 KCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred cCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 99999999999999963 68899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 003451 371 LKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNC 450 (819)
Q Consensus 371 ~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 450 (819)
++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. +|..+|++++.+|++.|++++|+++|++|.+.|+
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999964 6889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003451 451 KPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAV 530 (819)
Q Consensus 451 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 530 (819)
.||..+|+.++.+|++.|+.++|.++++.|.+.|+.|+..+++.|+++|++.|++++|.++|++|.+ +|..+|+.+
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~m 461 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSI 461 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999976 488899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCH
Q 003451 531 LAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLL 610 (819)
Q Consensus 531 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 610 (819)
+.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.++..+++.++.+|+++|++
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 9999999999999999999986 589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003451 611 MDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREI 690 (819)
Q Consensus 611 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 690 (819)
++|..+|+.+ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|
T Consensus 541 ~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 541 NYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred HHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 9999999987 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-C
Q 003451 691 L-AKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-N 768 (819)
Q Consensus 691 ~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~ 768 (819)
. +.|+.|+..+|+.++++|++.|++++|.+++++|. +.||..+|..++.+|...|+.+.|....+++.+ +.| +
T Consensus 616 ~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~ 690 (857)
T PLN03077 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNS 690 (857)
T ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCC
Confidence 9 78999999999999999999999999999999984 789999999999999999999999999999998 577 6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCC
Q 003451 769 QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 769 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
...|..+.+.|...|+|++|.++.+.|.+.+...
T Consensus 691 ~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k 724 (857)
T PLN03077 691 VGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724 (857)
T ss_pred cchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Confidence 7788899999999999999999999998876553
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4e-69 Score=604.62 Aligned_cols=546 Identities=18% Similarity=0.276 Sum_probs=496.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003451 205 DIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGC-KPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFN 283 (819)
Q Consensus 205 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~ 283 (819)
..+...|..++..|++.|++++|+++|++|.+.|+ .++..+++.++.+|++.| ..++|..+++.|.. ||..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g-~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQR-AVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCC-CHHHHHHHHHHcCC----CCHHHHH
Confidence 45678899999999999999999999999999985 467888889999999999 89999999999974 8999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcC
Q 003451 284 TLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDG 363 (819)
Q Consensus 284 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 363 (819)
.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 003451 364 LLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRS--AGCKPNICTFNALIKMHGNRGNFVEMMKV 441 (819)
Q Consensus 364 ~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 441 (819)
++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 67899999999999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003451 442 FDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVT 521 (819)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 521 (819)
|++|.+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003451 522 PDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLI 601 (819)
Q Consensus 522 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 601 (819)
|+..+|+.++.+|++.|++++|.++|++|.+.++.||..+|+.++.+|++.|++++|.+++++|...++.|+..+|..++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003451 602 LVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFA 681 (819)
Q Consensus 602 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 681 (819)
.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ ++++|.++.+.+.... .+......+..+
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~----------~g~~~~~n~w~~ 829 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFD----------SGRPQIENKWTS 829 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhh----------ccccccccchHH
Confidence 9999999999999999999999999999999999876542 4666665544443211 011111223446
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003451 682 RAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMI 761 (819)
Q Consensus 682 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 761 (819)
+|..+|++|++.|+.||..+|+.++.+++..+..+.+..+++.|...+..|+..+|+.++.++++. .++|..++++|.
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 799999999999999999999999988888888899988888888777888888999999987432 368999999999
Q ss_pred HcCCCCCH
Q 003451 762 KQGCKPNQ 769 (819)
Q Consensus 762 ~~~~~p~~ 769 (819)
+.|+.|+.
T Consensus 908 ~~Gi~p~~ 915 (1060)
T PLN03218 908 SLGVVPSV 915 (1060)
T ss_pred HcCCCCCc
Confidence 99998875
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.5e-69 Score=602.87 Aligned_cols=545 Identities=20% Similarity=0.301 Sum_probs=505.9
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003451 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGF-DIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVIL 250 (819)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 250 (819)
+...|..++..|++.|++++|.++|++|.+.|+ .++...++.++..|.+.|..++|..+|+.|.. ||..+|+.++
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL 444 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLM 444 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHH
Confidence 455677888889999999999999999999886 46777888999999999999999999999974 8999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCh
Q 003451 251 NVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRP 330 (819)
Q Consensus 251 ~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 330 (819)
.+|++.| +++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++
T Consensus 445 ~a~~k~g-~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 445 SVCASSQ-DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 9999999 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003451 331 KEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVE--IGITPDVFTYTTLLSGFEKAGKDESAMKVFE 408 (819)
Q Consensus 331 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~ 408 (819)
++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987 6789999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003451 409 EMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPE 488 (819)
Q Consensus 409 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 488 (819)
+|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.++|.+++++|.+.|+.|+
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003451 489 RDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHA 568 (819)
Q Consensus 489 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 568 (819)
..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 003451 569 YANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKT 648 (819)
Q Consensus 569 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 648 (819)
|++.|++++|..++.+|.+.|+.|+..+++.++..|. +.++++....+.+... +. .......+..++|
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f---------~~-g~~~~~n~w~~~A 831 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSF---------DS-GRPQIENKWTSWA 831 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhh---------hc-cccccccchHHHH
Confidence 9999999999999999999999999999999987654 2455555554443321 10 1111122345679
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003451 649 NEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS 728 (819)
Q Consensus 649 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 728 (819)
..+|++|.+.|+.||..+|+.++.++++.+..+.+..+++.+...+..|+..+|+++++++++. .++|..++++|.+.
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 9999999999999999999999998889999999999999998888889999999999998532 47899999999999
Q ss_pred CCCCCHH
Q 003451 729 GLVPDVI 735 (819)
Q Consensus 729 g~~p~~~ 735 (819)
|+.|+..
T Consensus 910 Gi~p~~~ 916 (1060)
T PLN03218 910 GVVPSVS 916 (1060)
T ss_pred CCCCCcc
Confidence 9999874
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.9e-63 Score=558.11 Aligned_cols=473 Identities=22% Similarity=0.346 Sum_probs=449.0
Q ss_pred hcHHHHHHhhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 003451 134 ADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTS 213 (819)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 213 (819)
..+..++..+...|++++|+++|++|.. .....++..+|+.++.+|++.++++.|.+++..|.+.|+.+|..+|+.
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~----~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEA----GCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3567788999999999999999999976 222346889999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 003451 214 LITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGS 293 (819)
Q Consensus 214 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 293 (819)
|+++|++.|++++|..+|++|. .||.++||.++.+|++.| ++++|.++|++|.+.|+.|+..||+.++.+|++.|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g-~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAG-NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCc-CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 9999999999999999999996 479999999999999999 89999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 003451 294 LHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKT 373 (819)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 373 (819)
..+.+.+++..+.+.|+.+|..+|++|+.+|+++|++++|.++|++|. .+|+++||.||.+|++.|++++|+++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999994 5699999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 003451 374 QMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPD 453 (819)
Q Consensus 374 ~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 453 (819)
+|.+.|+.||..||+.++.+|++.|++++|.+++++|.+.|+.+|..+|++|+++|+++|++++|.++|++|. .+|
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 479
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 003451 454 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLE-AGVTPDLSTYNAVLA 532 (819)
Q Consensus 454 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~ 532 (819)
..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.+++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 599999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHH
Q 003451 533 ALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMD 612 (819)
Q Consensus 533 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 612 (819)
+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++.+.. +.+...|..+++.|++.|++++
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHH
Confidence 999999999999999876 468999999999999999999999999999997654 3356788999999999999999
Q ss_pred HHHHHHHHHHcCCCC
Q 003451 613 TERAFLELKKKGFSP 627 (819)
Q Consensus 613 a~~~~~~~~~~~~~~ 627 (819)
|.++++.|.+.|+..
T Consensus 547 A~~v~~~m~~~g~~k 561 (697)
T PLN03081 547 AAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHHHHcCCcc
Confidence 999999999998753
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.6e-62 Score=546.64 Aligned_cols=513 Identities=19% Similarity=0.321 Sum_probs=418.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003451 206 IDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTL 285 (819)
Q Consensus 206 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l 285 (819)
.+...|+.+|.+|.+.|++++|..+|+.|...+ ++.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~-----------------------------------~~~~~~~t~~~l 129 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGC-----------------------------------PFTLPASTYDAL 129 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcC-----------------------------------CCCCCHHHHHHH
Confidence 345567777777777777777777777666542 133455555555
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCH
Q 003451 286 ISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLL 365 (819)
Q Consensus 286 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 365 (819)
+.+|++.++.+.|.+++..|.+.|+.||..+||.|+.+|++.|++++|.++|++|. .||.++||.+|.+|++.|++
T Consensus 130 l~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~ 205 (697)
T PLN03081 130 VEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNY 205 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCH
Confidence 55555556667777777777777778888888888888888888888888888883 46888888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003451 366 EEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEI 445 (819)
Q Consensus 366 ~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 445 (819)
++|+++|++|.+.|+.||..+|+.++.+|+..|+.+.+.+++..+.+.|+.+|..+|++|+.+|++.|++++|.++|++|
T Consensus 206 ~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m 285 (697)
T PLN03081 206 REAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM 285 (697)
T ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 003451 446 NKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLS 525 (819)
Q Consensus 446 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 525 (819)
. .+|..+||.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..
T Consensus 286 ~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~ 361 (697)
T PLN03081 286 P----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361 (697)
T ss_pred C----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee
Confidence 6 468888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 003451 526 TYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYS 605 (819)
Q Consensus 526 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 605 (819)
+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|++++++|.+.|+.|+..+|..++.+|+
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 437 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 888888888888888888888888863 6788888888888888888888888888888888888888888888889
Q ss_pred cCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003451 606 KSDLLMDTERAFLELKK-KGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAE 684 (819)
Q Consensus 606 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 684 (819)
+.|++++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++++.+|...|+++.|.
T Consensus 438 ~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~ 514 (697)
T PLN03081 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGR 514 (697)
T ss_pred cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999875 689999999999999999999999999998876 56899999999999999999999999
Q ss_pred HHHHHHHHCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH-------HHHHH----hcCChH
Q 003451 685 DVLREILAKGIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI-TYNTF-------VASYA----ADSLFV 751 (819)
Q Consensus 685 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l-------~~~~~----~~g~~~ 751 (819)
.+++++.+. .| +..+|..++.+|++.|++++|.+++++|.+.|+...+. +|..+ +..-. ...-++
T Consensus 515 ~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~ 592 (697)
T PLN03081 515 LAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQ 592 (697)
T ss_pred HHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHH
Confidence 999999764 44 47899999999999999999999999999998753321 22111 00000 011245
Q ss_pred HHHHHHHHHHHcCCCCCHH
Q 003451 752 EALDVVRYMIKQGCKPNQN 770 (819)
Q Consensus 752 ~A~~~~~~~~~~~~~p~~~ 770 (819)
...++..+|.+.|+.||..
T Consensus 593 ~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 593 KLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHHHHcCCCCCcc
Confidence 6667888888999999743
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.5e-37 Score=368.04 Aligned_cols=612 Identities=13% Similarity=0.071 Sum_probs=464.7
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHH
Q 003451 183 LGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNK 262 (819)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~ 262 (819)
+...|++++|...++.+.+.+.. ....+..+..++...|++++|...|+++.+... .+...+..+...+.+.| ++++
T Consensus 271 ~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g-~~~~ 347 (899)
T TIGR02917 271 DFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLG-RVDE 347 (899)
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCC-CHHH
Confidence 33455555555555555444322 223333444555666666666666666665532 24555666666677777 6777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 003451 263 IMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKI 342 (819)
Q Consensus 263 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 342 (819)
|...++.+.... ..+...+..+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 348 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 425 (899)
T TIGR02917 348 AIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQ 425 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 777777776544 2356667777777777777777777777777653 23455666677777777777777777777766
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003451 343 NGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTF 422 (819)
Q Consensus 343 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 422 (819)
... ........++..+.+.|++++|.++++++... .+.+..++..+...+...|++++|.+.|+++.+.. +.+...+
T Consensus 426 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 502 (899)
T TIGR02917 426 LDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAA 502 (899)
T ss_pred hCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHH
Confidence 532 23445556677777888888888888877764 34466678888888888888888888888887653 3356677
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003451 423 NALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRC 502 (819)
Q Consensus 423 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 502 (819)
..++..+...|++++|.+.++++.... +.+..++..+...+.+.|+.++|...++++.+.+. .+...+..++..+...
T Consensus 503 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 580 (899)
T TIGR02917 503 ANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGK 580 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHC
Confidence 778888888888888888888887654 45677888888888888888999888888877643 3566777888888889
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 003451 503 GSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALS 582 (819)
Q Consensus 503 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 582 (819)
|++++|.++++.+.+... .+...|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...+
T Consensus 581 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 581 GQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred CCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999988887543 367888888889999999999999999887653 445677888888888899999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 003451 583 EEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTP 662 (819)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 662 (819)
+++.+.. +.+...+..++..+...|++++|..+++.+.+.+ +.+...+..++..+...|++++|.+.++.+...+ |
T Consensus 659 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~ 734 (899)
T TIGR02917 659 KRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--P 734 (899)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--C
Confidence 9888754 5567788888888999999999999999888765 3466778888888899999999999999988764 5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003451 663 SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVA 742 (819)
Q Consensus 663 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 742 (819)
+..++..++.++.+.|++++|.+.++++.+.. +.+...+..++..|...|++++|.++|+++.+.+ ..+..++..++.
T Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~ 812 (899)
T TIGR02917 735 SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAW 812 (899)
T ss_pred CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 55777788899999999999999999988763 4468888899999999999999999999998864 346778889999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Q 003451 743 SYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAK 816 (819)
Q Consensus 743 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~~ 816 (819)
.+...|+ .+|+.+++++.+. .| +..++..++..+...|++++|.++++++++.+|.+ ...+..+...+.+
T Consensus 813 ~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~ 883 (899)
T TIGR02917 813 LYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA-AAIRYHLALALLA 883 (899)
T ss_pred HHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHH
Confidence 9999999 8899999999884 45 67788899999999999999999999999999985 4555556665543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.8e-37 Score=369.31 Aligned_cols=627 Identities=13% Similarity=0.050 Sum_probs=537.8
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 003451 145 FHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRY 224 (819)
Q Consensus 145 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 224 (819)
..|+++.|+..|..+.+. ++. ....+..+..++...|+++.|...+..+.+... .+...+..+...+.+.|++
T Consensus 273 ~~~~~~~A~~~~~~~l~~---~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~ 345 (899)
T TIGR02917 273 QKKNYEDARETLQDALKS---APE---YLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRV 345 (899)
T ss_pred HhcCHHHHHHHHHHHHHh---CCC---chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCH
Confidence 345666666666665441 111 122344556677889999999999999887643 3677888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003451 225 REAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEE 304 (819)
Q Consensus 225 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 304 (819)
++|...++++.+.. +.+...+..+...+.+.| ++++|.+.|+++.+... .+...+..+...+...|++++|.+.++.
T Consensus 346 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 422 (899)
T TIGR02917 346 DEAIATLSPALGLD-PDDPAALSLLGEAYLALG-DFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLET 422 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 99999999998775 347888999999999999 89999999999987653 3667788888899999999999999999
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 003451 305 MKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDV 384 (819)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 384 (819)
+.+... ........++..|.+.|++++|.++++++... .+.+..+|..+...|...|++++|.+.|+++.+.. +.+.
T Consensus 423 a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 499 (899)
T TIGR02917 423 AAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFF 499 (899)
T ss_pred HHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcH
Confidence 988743 24456677888999999999999999999876 45578899999999999999999999999998864 3356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003451 385 FTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVF 464 (819)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (819)
..+..+...+...|++++|.+.++++...+ +.+..++..+...+.+.|+.++|...++++...+ +.+...+..++..|
T Consensus 500 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 577 (899)
T TIGR02917 500 PAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYY 577 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHH
Confidence 678888999999999999999999998764 3477889999999999999999999999998764 55678888999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003451 465 GQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSE 544 (819)
Q Consensus 465 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 544 (819)
...|++++|..+++.+.+.. +.+..++..++..+...|++++|...|+.+.+.... +...+..+...+.+.|++++|.
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998764 447788999999999999999999999999886543 6778889999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 003451 545 KIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKG 624 (819)
Q Consensus 545 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 624 (819)
..++++.+.. +.+..++..++..+...|++++|..+++.+.+.. +.+...+..++..+...|++++|...|+.+...+
T Consensus 656 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 656 TSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 9999998763 4567889999999999999999999999998875 5667778889999999999999999999999874
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 003451 625 FSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNT 704 (819)
Q Consensus 625 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 704 (819)
|+..++..++..+.+.|++++|.+.++.+.+.. +.+...+..++..|...|++++|.++|+++.+.. +.+...++.
T Consensus 734 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 809 (899)
T TIGR02917 734 --PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNN 809 (899)
T ss_pred --CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 455777888999999999999999999999864 6678889999999999999999999999999874 457889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003451 705 VIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQ 784 (819)
Q Consensus 705 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 784 (819)
++..+...|+ ++|+.+++++.+.. .-+...+..++..+...|++++|..+++++++.+. .+..++..++.++.+.|+
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGR 886 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCC
Confidence 9999999999 88999999998852 22456778899999999999999999999999652 288999999999999999
Q ss_pred HhHHHHHHHHhhh
Q 003451 785 RYEAITFVNNLSK 797 (819)
Q Consensus 785 ~~~A~~~~~~~~~ 797 (819)
.++|.+.++++++
T Consensus 887 ~~~A~~~~~~~~~ 899 (899)
T TIGR02917 887 KAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999864
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.9e-28 Score=287.01 Aligned_cols=637 Identities=15% Similarity=0.084 Sum_probs=473.5
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH-----
Q 003451 136 LLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYA----- 210 (819)
Q Consensus 136 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----- 210 (819)
+..-++-....++.+.|.+.+..+.. .+++ ++.++..++.++.+.|+.++|.+.++.+.+..+. +...
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~---~~p~---~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~ 103 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLEL---IDPN---NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRT 103 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHc---cCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHH
Confidence 45555666667899999999998876 2333 6778899999999999999999999999887543 3322
Q ss_pred -----------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC
Q 003451 211 -----------YTSLITTYASNGRYREAVMVFKKMEEEGCKPTLI-TYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPD 278 (819)
Q Consensus 211 -----------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~ 278 (819)
...+.+.+.+.|++++|+..|+++.+.+.. +.. ............| ++++|.+.++++.+.... +
T Consensus 104 ~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g-~~~~A~~~L~~ll~~~P~-~ 180 (1157)
T PRK11447 104 TMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPA-QRPEAINQLQRLNADYPG-N 180 (1157)
T ss_pred HHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCc-cHHHHHHHHHHHHHhCCC-C
Confidence 234455788999999999999999876433 322 1111112222346 899999999999987532 6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--H-----------------HhHHHHHHHHHhCCChHHHHHHHHH
Q 003451 279 SYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPD--K-----------------VTYNALLDVYGKCRRPKEAMQVLRE 339 (819)
Q Consensus 279 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~-----------------~~~~~l~~~~~~~g~~~~A~~~~~~ 339 (819)
...+..+...+...|+.++|++.++++........ . ..+...+..+-.....+.|...+.+
T Consensus 181 ~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~ 260 (1157)
T PRK11447 181 TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAE 260 (1157)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 77788888999999999999999999876421100 0 0111112222222234556666655
Q ss_pred HHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C
Q 003451 340 MKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKP-N 418 (819)
Q Consensus 340 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~ 418 (819)
+......|.... ......+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+..... .
T Consensus 261 ~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~ 338 (1157)
T PRK11447 261 QQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN 338 (1157)
T ss_pred HHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc
Confidence 544322333222 234567788999999999999999863 3367788899999999999999999999998764221 1
Q ss_pred HHHH------------HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003451 419 ICTF------------NALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFI 486 (819)
Q Consensus 419 ~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 486 (819)
...+ ......+.+.|++++|+..|+++.... +.+...+..+...+...|++++|++.|+++.+...
T Consensus 339 ~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p- 416 (1157)
T PRK11447 339 RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP- 416 (1157)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-
Confidence 1111 223456778999999999999998874 45677888899999999999999999999988643
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003451 487 PERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVT--------PDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPN 558 (819)
Q Consensus 487 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 558 (819)
.+...+..+...+. .++.++|..+++.+...... .....+..+...+...|++++|++.|++..+.. +-+
T Consensus 417 ~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~ 494 (1157)
T PRK11447 417 GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGS 494 (1157)
T ss_pred CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 24566666777664 46789999888765432100 112345566778889999999999999998763 345
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHH--------
Q 003451 559 ELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIP-------- 630 (819)
Q Consensus 559 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------- 630 (819)
...+..+...|...|++++|...++++++.. +.+...+..+...+...++.++|...++.+......++..
T Consensus 495 ~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~ 573 (1157)
T PRK11447 495 VWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQS 573 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhh
Confidence 6677888899999999999999999998754 4455555666667788999999999998865432222221
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 003451 631 -TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAY 709 (819)
Q Consensus 631 -~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 709 (819)
.+..++..+...|+.++|.++++. .+.+...+..+...+.+.|++++|++.|+++++.. +.+...+..++..|
T Consensus 574 ~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~ 647 (1157)
T PRK11447 574 DQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVD 647 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 233456778899999999999872 25566778889999999999999999999999864 33688999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CC---CHHHHHHHHHHHHhcC
Q 003451 710 CRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGC--KP---NQNTYNSIVDGYCKLN 783 (819)
Q Consensus 710 ~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g 783 (819)
...|++++|++.++.+.+. .| +...+..++.++...|++++|..+++++++... .| +..++..++..+...|
T Consensus 648 ~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G 725 (1157)
T PRK11447 648 IAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTG 725 (1157)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcC
Confidence 9999999999999988874 44 455677888999999999999999999987421 11 2356777899999999
Q ss_pred CHhHHHHHHHHhhh
Q 003451 784 QRYEAITFVNNLSK 797 (819)
Q Consensus 784 ~~~~A~~~~~~~~~ 797 (819)
+.++|+..++++..
T Consensus 726 ~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 726 QPQQALETYKDAMV 739 (1157)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999975
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=5.9e-27 Score=277.08 Aligned_cols=608 Identities=10% Similarity=0.030 Sum_probs=455.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH---------
Q 003451 176 IAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITY--------- 246 (819)
Q Consensus 176 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--------- 246 (819)
+-..++..-..++.+.|.+.+..+...... ++.++..++..+.+.|+.++|...+++..+..+. +...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhc
Confidence 445566677889999999999998876544 7888999999999999999999999999987533 22222
Q ss_pred -------HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 003451 247 -------NVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSY-TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYN 318 (819)
Q Consensus 247 -------~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 318 (819)
......+.+.| ++++|++.|+++.+.+. |+.. ....+.......|+.++|.+.++++.+.. +.+...+.
T Consensus 109 ~~~~~~~l~~A~ll~~~g-~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~ 185 (1157)
T PRK11447 109 TPEGRQALQQARLLATTG-RTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRN 185 (1157)
T ss_pred CCchhhHHHHHHHHHhCC-CHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 23344677888 89999999999987643 3322 22222222335699999999999999884 44677888
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC--Hhh-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003451 319 ALLDVYGKCRRPKEAMQVLREMKINGCLPS--IVT-----------------YNSLISAYARDGLLEEAMELKTQMVEIG 379 (819)
Q Consensus 319 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~-----------------~~~li~~~~~~g~~~~A~~~~~~m~~~g 379 (819)
.+...+...|+.++|+..++++........ ... +...+..+-.....+.|...+.++....
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~ 265 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL 265 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence 999999999999999999999865421100 011 1111111112223455666666655443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC-CHHHHH
Q 003451 380 ITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKP-DIVTWN 458 (819)
Q Consensus 380 ~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 458 (819)
..|+... ......+...|++++|+..|++.++.. +.+..++..+...+.+.|++++|+..|++..+..... ....|.
T Consensus 266 ~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 266 ADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred cCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 3333222 233566778999999999999999863 3478889999999999999999999999998763221 112222
Q ss_pred ------------HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 003451 459 ------------TLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLST 526 (819)
Q Consensus 459 ------------~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 526 (819)
.....+.+.|++++|...|+++.+... .+...+..+...+...|++++|++.|+++.+.... +...
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a 421 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNA 421 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 224467789999999999999998743 35667888999999999999999999999986543 5666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC--------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003451 527 YNAVLAALARGGMWEQSEKIFAEMKGGRC--------KPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLK 598 (819)
Q Consensus 527 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 598 (819)
+..+...+. .++.++|+.+++.+..... ......+..+...+...|++++|+..+++.++.. +.+..++.
T Consensus 422 ~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~ 499 (1157)
T PRK11447 422 VRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTY 499 (1157)
T ss_pred HHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 777777764 5678999998876543210 0012234556677888999999999999999875 45677888
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH---------HHHH
Q 003451 599 TLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLT---------TYNT 669 (819)
Q Consensus 599 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~---------~~~~ 669 (819)
.++..|.+.|++++|...++++.+... .+...+..+...+...++.++|+..++.+......++.. .+..
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~ 578 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE 578 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence 899999999999999999999987642 355555556666778999999999998875432222221 1234
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 003451 670 LMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADS 748 (819)
Q Consensus 670 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g 748 (819)
+...+...|+.++|+++++. .+.+...+..+...+.+.|++++|++.|+++.+. .| +...+..++..+...|
T Consensus 579 ~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQG 651 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC
Confidence 56778899999999999872 2446677888999999999999999999999985 34 5678999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCH
Q 003451 749 LFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 749 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
++++|++.++.+.+ ..| +..++..++.++...|++++|...++++.+..|+.+.
T Consensus 652 ~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 652 DLAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred CHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 99999999999887 355 5677888999999999999999999999998776554
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=3.8e-24 Score=240.43 Aligned_cols=610 Identities=10% Similarity=0.013 Sum_probs=420.4
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 003451 145 FHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRY 224 (819)
Q Consensus 145 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 224 (819)
..|+++.|+..|+.+.+ .+|. +..++..++.++.+.|+.++|+..+++..+... .|...+..+ ..+ +++
T Consensus 56 ~~Gd~~~A~~~l~~Al~---~dP~---n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~i---~~~ 124 (987)
T PRK09782 56 KNNDEATAIREFEYIHQ---QVPD---NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AAI---PVE 124 (987)
T ss_pred hCCCHHHHHHHHHHHHH---hCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HHh---ccC
Confidence 34889999999998876 3443 467788999999999999999999999887744 345555444 222 888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--------HHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHcCCCH
Q 003451 225 REAVMVFKKMEEEGCKPTLITYNVILNV--------YGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTL-ISCCRRGSLH 295 (819)
Q Consensus 225 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~--------~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~g~~ 295 (819)
.+|..+++++.+..+. +...+..+... |.+ +++|.+.++ .......|+..+.... ...|.+.|++
T Consensus 125 ~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q----~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 125 VKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQ----LPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred hhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhh----HHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 9999999999987433 34444444443 443 566666666 4444455556655555 8889999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh-CCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 003451 296 EEAAGVFEEMKLAGFSPDKVTYNALLDVYGK-CRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQ 374 (819)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 374 (819)
++|++++.++.+.+ +.+......|...|.. .++ +++..+++.. ...+...+..++..|.+.|+.++|.+++.+
T Consensus 199 ~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 199 SQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999999986 3355557777778887 466 8888886542 335788888999999999999999999999
Q ss_pred HHHcCCC-CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003451 375 MVEIGIT-PDVFTYTTLLSGFEKAGKDE-SAMKVFEEMRSAGCKPN-ICTFNALIKMHGNRGNFVEMMKVFDEINKCNCK 451 (819)
Q Consensus 375 m~~~g~~-pd~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 451 (819)
+...... |+..++.-+ +.+.+... .|..-|.+ ...++ ......++..+.+.++++-+.++.. +.
T Consensus 273 ~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 339 (987)
T PRK09782 273 NKPLFTTDAQEKSWLYL---LSKYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TL 339 (987)
T ss_pred CcccccCCCccHHHHHH---HHhccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CC
Confidence 8765333 444444332 33444332 11111111 01111 1223344677778888886665522 13
Q ss_pred CCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHH
Q 003451 452 PDIVTWNTLLAV--FGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA--GVTPDLSTY 527 (819)
Q Consensus 452 ~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 527 (819)
|.... ..++. ....+...++...++.|.+... -+......+.-.....|+.++|..+|+..... +...+....
T Consensus 340 ~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 416 (987)
T PRK09782 340 PANEM--LEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLM 416 (987)
T ss_pred CcchH--HHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHH
Confidence 33222 22222 2234666666666766766522 24444555555566778888888888887763 122344455
Q ss_pred HHHHHHHHhcCC---HHHHHHH-------------------------HHHHHhCCCCC--CHHHHHHHHHHHHccCCHHH
Q 003451 528 NAVLAALARGGM---WEQSEKI-------------------------FAEMKGGRCKP--NELTYSSLLHAYANGREIDQ 577 (819)
Q Consensus 528 ~~l~~~~~~~g~---~~~A~~~-------------------------~~~m~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 577 (819)
..++..|.+.+. ..++..+ +...... .++ +...|..+..++.. ++.++
T Consensus 417 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~e 494 (987)
T PRK09782 417 ARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGV 494 (987)
T ss_pred HHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHH
Confidence 566666666655 2233222 2222221 123 56677777777776 78888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 003451 578 MLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMND 657 (819)
Q Consensus 578 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 657 (819)
|+..+.+..... |+......++..+...|++++|...|+++... .|+...+..+...+.+.|+.++|.+.++...+
T Consensus 495 Ai~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~ 570 (987)
T PRK09782 495 ALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ 570 (987)
T ss_pred HHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999888877654 44444445566667899999999999987654 34455566777788889999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHH
Q 003451 658 SGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVIT 736 (819)
Q Consensus 658 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~ 736 (819)
.. +.+...+..+.....+.|++++|...+++.++. .|+...|..+..++.+.|++++|...+++..+. .| +...
T Consensus 571 l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a 645 (987)
T PRK09782 571 RG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNY 645 (987)
T ss_pred cC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 64 333334444444555669999999999999885 567888999999999999999999999999884 44 4557
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHH
Q 003451 737 YNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 737 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
+..++.++...|++++|+..++++++ ..| +...+..++.++...|++++|...+++++++.|+...+.
T Consensus 646 ~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 646 QAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 88888899999999999999999998 466 678888999999999999999999999999999886664
No 12
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.5e-23 Score=215.19 Aligned_cols=664 Identities=13% Similarity=0.073 Sum_probs=469.5
Q ss_pred hcHHHHHHhhccCCChHHHHHHHHHHHhccCCCCCccc-h-HHHHHHHHHHHHhcC-----------ChHHHHHHHHHHh
Q 003451 134 ADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVL-R-GSVIAVLISMLGKEG-----------KVSVAASLLHGLH 200 (819)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~-----------~~~~a~~~~~~~~ 200 (819)
..++.+...+..+|+.++.+.+++.....+........ + ..++..+...++..+ .+..|.-+|+...
T Consensus 42 e~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ 121 (1018)
T KOG2002|consen 42 EAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLAD 121 (1018)
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHH
Confidence 45677888999999999999998876521111110000 0 112222222221111 1334444444333
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CC
Q 003451 201 KDGFDIDVYAYTSLITTYASNGR--YREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAG--VK 276 (819)
Q Consensus 201 ~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~--~~ 276 (819)
+.....+...+..- ..|...|. ++.|...|....+.. ++++...-.=.......+ ++..|+.+|....... ..
T Consensus 122 ki~m~~~~~l~~~~-~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkk-dY~~al~yyk~al~inp~~~ 198 (1018)
T KOG2002|consen 122 KIDMYEDSHLLVQR-GFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKK-DYRGALKYYKKALRINPACK 198 (1018)
T ss_pred HhhccCcchhhhhh-hhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccc-cHHHHHHHHHHHHhcCcccC
Confidence 22111111111111 11222332 689999999998763 224433322222333445 8999999999976543 34
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhC---CChHHHHHHHHHHHHCCCCCCHhhHH
Q 003451 277 PDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKC---RRPKEAMQVLREMKINGCLPSIVTYN 353 (819)
Q Consensus 277 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~ 353 (819)
||.. -.+..++.+.|+.+.|...|++..+.+. .++.++-.|...-... ..+..+..++...-.. -.-+.+..+
T Consensus 199 aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~-n~~nP~~l~ 274 (1018)
T KOG2002|consen 199 ADVR--IGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE-NNENPVALN 274 (1018)
T ss_pred CCcc--chhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh-cCCCcHHHH
Confidence 4443 2334567789999999999999998842 2344444443222222 3456677777776655 234788899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003451 354 SLISAYARDGLLEEAMELKTQMVEIGIT--PDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGN 431 (819)
Q Consensus 354 ~li~~~~~~g~~~~A~~~~~~m~~~g~~--pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 431 (819)
.|...|...|+++.+..+..-+...... .-...|-.+.++|-..|++++|...|.+..+..-..-...+..+.++|.+
T Consensus 275 ~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~ 354 (1018)
T KOG2002|consen 275 HLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK 354 (1018)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHH
Confidence 9999999999999999999988875321 11235777899999999999999999998876422224556678899999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 003451 432 RGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNG----MDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQ 507 (819)
Q Consensus 432 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 507 (819)
.|+++.+...|+.+.+.. +-+..+...|...|...+ ..+.|..++.+..+.- +.|...|..+...+-.. +...
T Consensus 355 ~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~ 431 (1018)
T KOG2002|consen 355 RGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWA 431 (1018)
T ss_pred hchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHH
Confidence 999999999999998874 455777888888887775 4566777777776654 34777888887777654 4444
Q ss_pred HHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCC------CHHHHHHHHHHHHccCC
Q 003451 508 AMSIYKRML----EAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGG---RCKP------NELTYSSLLHAYANGRE 574 (819)
Q Consensus 508 A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~~------~~~~~~~l~~~~~~~~~ 574 (819)
++..|..+. ..+-.+..+..|.+...+...|.+++|...|...... ...+ +..+-..+...+...++
T Consensus 432 sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~ 511 (1018)
T KOG2002|consen 432 SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHD 511 (1018)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhh
Confidence 477776654 3455578999999999999999999999999988754 1122 22234446666777889
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003451 575 IDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHF 654 (819)
Q Consensus 575 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 654 (819)
.+.|.+.|..+++.. +.-...+..++......+...+|...++...... ..++..+..+...+.+...+..|.+-|..
T Consensus 512 ~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~ 589 (1018)
T KOG2002|consen 512 TEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFET 589 (1018)
T ss_pred hhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHH
Confidence 999999999999863 4445566666655556688999999999988754 34677788888888888888889887777
Q ss_pred HhhCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 003451 655 MNDSG-FTPSLTTYNTLMYMYSR------------SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRI 721 (819)
Q Consensus 655 ~~~~~-~~p~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 721 (819)
+.+.- ..+|.++..+|++.|.+ .+..++|+++|.++++.. +-|...-|.++-.++..|++.+|..+
T Consensus 590 i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dI 668 (1018)
T KOG2002|consen 590 ILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDI 668 (1018)
T ss_pred HHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHH
Confidence 76542 23677888788876653 356788999999999874 33788888899999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 003451 722 FSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ-GCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 722 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 800 (819)
|.+.++... -...+|.+++++|...|+|..|+++|+...+. +-.-+..+...|+.++++.|++.+|.+.+.++....|
T Consensus 669 FsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 669 FSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 999998643 24458999999999999999999999998754 3333788999999999999999999999999999999
Q ss_pred CCCHHHHHHHH
Q 003451 801 HVTKELECKLS 811 (819)
Q Consensus 801 ~~~~~~~~~l~ 811 (819)
.++.+.++..+
T Consensus 748 ~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 748 SNTSVKFNLAL 758 (1018)
T ss_pred ccchHHhHHHH
Confidence 99999877643
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=2.5e-22 Score=225.85 Aligned_cols=581 Identities=12% Similarity=0.050 Sum_probs=414.3
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHH
Q 003451 185 KEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIM 264 (819)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~ 264 (819)
..|++++|+..|+...+..+. +..++..|...|.+.|++++|+..+++..+. .|+...|..++..+ + ++.+|.
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~-~~~kA~ 128 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---P-VEVKSV 128 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---c-cChhHH
Confidence 459999999999999988665 5889999999999999999999999999987 44444444444444 5 688999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHH--------HHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHH-HHHHHhCCChHHHHH
Q 003451 265 ALVEGMKSAGVKPDSYTFNTLISC--------CRRGSLHEEAAGVFEEMKLAGFSPDKVTYNAL-LDVYGKCRRPKEAMQ 335 (819)
Q Consensus 265 ~~~~~~~~~~~~p~~~~~~~ll~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~ 335 (819)
..++++.+.... +..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|++
T Consensus 129 ~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 129 TTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 999999987533 34455544444 5544 56666665 3333333345444444 899999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003451 336 VLREMKINGCLPSIVTYNSLISAYAR-DGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAG 414 (819)
Q Consensus 336 ~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 414 (819)
+++++.+.+. .+......|..+|.. .++ +++..++.. .++-|......++..|.+.|+.++|.++++++...-
T Consensus 204 lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 204 LYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 9999999853 356667778888888 477 888888654 233578889999999999999999999999977543
Q ss_pred CC-CCHHHHHHHHHHHHccCCHH-HHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 003451 415 CK-PNICTFNALIKMHGNRGNFV-EMMKVFDEINKCNCKPD-IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDT 491 (819)
Q Consensus 415 ~~-~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 491 (819)
.. |...++-.++ .+.+... .|..-|.+ + ..++ ....-.++..+.+.++++.++++.. +.|....
T Consensus 278 ~~~~~~~~~~~~l---~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 344 (987)
T PRK09782 278 TTDAQEKSWLYLL---SKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM 344 (987)
T ss_pred cCCCccHHHHHHH---HhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH
Confidence 22 4444444333 3333321 12221211 0 0111 1222334778888999997765522 2333332
Q ss_pred HHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHH
Q 003451 492 FNTLISAY--SRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGG-R-CKPNELTYSSLLH 567 (819)
Q Consensus 492 ~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~-~~~~~~~~~~l~~ 567 (819)
. .++.. ...+...++.+.+..|...... +......+.....+.|+.++|..+|+..... + ...+.....-++.
T Consensus 345 ~--~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~ 421 (987)
T PRK09782 345 L--EERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLAS 421 (987)
T ss_pred H--HHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHH
Confidence 2 23222 2346777888888888775332 6666666667788999999999999998762 1 2234445557777
Q ss_pred HHHccCC---HHHHHHH----------------------HHHHHhC--CCCC--CHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003451 568 AYANGRE---IDQMLAL----------------------SEEIYSG--IIEP--HAVLLKTLILVYSKSDLLMDTERAFL 618 (819)
Q Consensus 568 ~~~~~~~---~~~a~~~----------------------~~~~~~~--~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 618 (819)
.|...+. ..++..+ ++..... ..+. +...+..++.++.. ++..+|...+.
T Consensus 422 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~ 500 (987)
T PRK09782 422 LLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWL 500 (987)
T ss_pred HHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHH
Confidence 7777655 3333222 1111111 1133 66777888888876 88999999888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003451 619 ELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD 698 (819)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 698 (819)
+.... .|+......+...+...|++++|...++++... +|+...+..++.++.+.|++++|..++++.++.+ ..+
T Consensus 501 ~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~ 575 (987)
T PRK09782 501 QAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGD 575 (987)
T ss_pred HHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Ccc
Confidence 88776 356544444555567899999999999998764 4556667778888999999999999999999864 223
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003451 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 777 (819)
...+..+...+...|++++|...+++..+ ..|+...+..++.++.+.|++++|+..++++++ ..| +...+..++.
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~ 651 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGY 651 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 34444444555567999999999999998 567888999999999999999999999999998 467 6788889999
Q ss_pred HHHhcCCHhHHHHHHHHhhhcCCCCCHHHHHH
Q 003451 778 GYCKLNQRYEAITFVNNLSKLDPHVTKELECK 809 (819)
Q Consensus 778 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 809 (819)
.+...|++++|+..++++++.+|++....++.
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nL 683 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKGLPDDPALIRQL 683 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999999999999987665443
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=2.8e-23 Score=205.29 Aligned_cols=440 Identities=14% Similarity=0.120 Sum_probs=287.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 003451 354 SLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRG 433 (819)
Q Consensus 354 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 433 (819)
.|..-..+.|++++|++.-...-..+. .+......+-..+.+..+.+.....-....+.. +.-..+|..+.+.+-..|
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhc
Confidence 344445555666666554443332211 111112222223333344444333333222221 223455666666666666
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHH
Q 003451 434 NFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDT-FNTLISAYSRCGSFDQAMSIY 512 (819)
Q Consensus 434 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~ 512 (819)
++++|+.+++.+.+.. +..+..|-.+..++...|+.+.|...|.+..+. .|+... ...+....-..|++.+|...|
T Consensus 131 ~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 131 QLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred hHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHH
Confidence 6666666666666542 234556666666666666666666666666554 233322 233444444567777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 003451 513 KRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPN-ELTYSSLLHAYANGREIDQMLALSEEIYSGIIE 591 (819)
Q Consensus 513 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 591 (819)
.+.++.... =...|+.|...+..+|+...|+..|++..+. .|+ ...|..|...|...+.++.|+..|...+... +
T Consensus 208 lkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p 283 (966)
T KOG4626|consen 208 LKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P 283 (966)
T ss_pred HHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence 777665322 2356777777777778777888877777764 343 3467777777777777888887777776643 4
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003451 592 PHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPD-IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTL 670 (819)
Q Consensus 592 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 670 (819)
.....+..++..|...|+++-|++.|++.++. .|+ ...|+.|..++-..|++.+|...+.+.+... +......+.|
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL 360 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL 360 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 45666777777778888888888888887775 333 5678888888888888888888888877653 3345667778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC
Q 003451 671 MYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI-TYNTFVASYAADS 748 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g 748 (819)
...|...|.+++|..+|....+- .|. ....+.|...|.++|++++|+..|++.++ +.|+.. .|..++..|-..|
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhh
Confidence 88888888888888888887763 344 56777888888888888888888888876 666653 7778888888888
Q ss_pred ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHHHHHH
Q 003451 749 LFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLS 811 (819)
Q Consensus 749 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~ 811 (819)
+.+.|+..+.+++. +.| -......|+..|...|...+|+.-++.++++.|+.++...+.+.
T Consensus 437 ~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh 498 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH 498 (966)
T ss_pred hHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHH
Confidence 88888888888877 556 35667788888888888888888888888888887776655443
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.3e-22 Score=200.73 Aligned_cols=445 Identities=14% Similarity=0.161 Sum_probs=269.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH
Q 003451 282 FNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYAR 361 (819)
Q Consensus 282 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 361 (819)
...|..-..+.|++++|++.-...-..+ +.+....-.+-.++....+.+.....-....+. .+--..+|+.+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 3444555556666666665544333331 112222222223444444555444333333322 22244556666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCHHHHH
Q 003451 362 DGLLEEAMELKTQMVEIGITP-DVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICT-FNALIKMHGNRGNFVEMM 439 (819)
Q Consensus 362 ~g~~~~A~~~~~~m~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~ 439 (819)
.|++++|+.+++.+++. +| ....|..+..++...|+.+.|.+.|.+.++. .|+... ...+...+...|++++|.
T Consensus 129 rg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 66666666666666654 22 2335566666666666666666666665554 233222 222223333445555555
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003451 440 KVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAG 519 (819)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 519 (819)
..+.+..+.. |. -...|..|...+-..|+...|++.|++....+
T Consensus 205 ~cYlkAi~~q--p~----------------------------------fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld 248 (966)
T KOG4626|consen 205 ACYLKAIETQ--PC----------------------------------FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD 248 (966)
T ss_pred HHHHHHHhhC--Cc----------------------------------eeeeehhcchHHhhcchHHHHHHHHHHhhcCC
Confidence 5555444331 11 12334445555555555555555555555432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003451 520 VTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKT 599 (819)
Q Consensus 520 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 599 (819)
.. -...|..|...|...+.+++|...|.+..... +.....+..+.-.|...|.++-|+..|++.++.. +.-...++.
T Consensus 249 P~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~N 325 (966)
T KOG4626|consen 249 PN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNN 325 (966)
T ss_pred Cc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhH
Confidence 11 23455555555555666666666655555431 2223344444445556666666666666666542 333566666
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcC
Q 003451 600 LILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS-LTTYNTLMYMYSRSE 678 (819)
Q Consensus 600 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 678 (819)
++.++...|++.+|++.|.+.+... ..-..+.+.|...|...|.+++|..+|....+. .|. ....+.|...|-.+|
T Consensus 326 lanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqg 402 (966)
T KOG4626|consen 326 LANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQG 402 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcc
Confidence 6777777777777777777766643 224567788888888888899999888888874 343 356788888899999
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHH
Q 003451 679 NFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDV 756 (819)
Q Consensus 679 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 756 (819)
++++|+..+++.++ ++|+ ...|+.+...|...|+.+.|.+.+.+++. +.|.. +.++.|+..|-..|++.+|+..
T Consensus 403 nl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~s 478 (966)
T KOG4626|consen 403 NLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQS 478 (966)
T ss_pred cHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHH
Confidence 99999999999887 5676 78899999999999999999999999887 56654 4788899999999999999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHH
Q 003451 757 VRYMIKQGCKPN-QNTYNSIVDGYC 780 (819)
Q Consensus 757 ~~~~~~~~~~p~-~~~~~~l~~~~~ 780 (819)
|+.+++ ++|| +..|..++.++-
T Consensus 479 Y~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 479 YRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHc--cCCCCchhhhHHHHHHH
Confidence 999988 6785 456666666654
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.3e-20 Score=193.20 Aligned_cols=597 Identities=14% Similarity=0.106 Sum_probs=422.2
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 003451 189 VSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEG--CKPTLITYNVILNVYGKMGMPWNKIMAL 266 (819)
Q Consensus 189 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~~a~~~ 266 (819)
++.|.+.|....+..+. ++-.+-.-.......|++..|+.+|......+ +.+|+. -.+.-++.+.| ..+.|...
T Consensus 146 ~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~-~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPD-NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLG-MSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhCCc-chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhcc-chhhHHHH
Confidence 68888888888776433 44333333344445678889999998876543 344443 23334566777 68888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 003451 267 VEGMKSAGVKPDSYTFNTLISCCRR---GSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKIN 343 (819)
Q Consensus 267 ~~~~~~~~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 343 (819)
|++..+.+. -++.++..|...-.. ...+..+...+...-... .-|..+.+.|...|.-.|+++.+..+...+...
T Consensus 222 ~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 222 FERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 888887643 233344333322222 234555666666555543 346777888899999999999999988888664
Q ss_pred CCC--CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003451 344 GCL--PSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICT 421 (819)
Q Consensus 344 g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 421 (819)
-.. --...|..+.++|-..|++++|...|.+..+..-.--...+..|...+...|+++.+...|+.+.+.. +.+..+
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~et 378 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYET 378 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHH
Confidence 211 12345778889999999999999999887765322113455677888999999999999999988762 345667
Q ss_pred HHHHHHHHHccC----CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----HHCCCCCCHHHHH
Q 003451 422 FNALIKMHGNRG----NFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEM----KRAGFIPERDTFN 493 (819)
Q Consensus 422 ~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m----~~~~~~~~~~~~~ 493 (819)
...|...|...+ ..+.|..++.+..+.- +.|...|-.+...+....-+.. +..|... ...+..+.....|
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHH
Confidence 777777777664 5677888887777653 5577778777777766555444 6665543 3455557788899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC---CCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHH
Q 003451 494 TLISAYSRCGSFDQAMSIYKRMLEA---GVT------PDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNEL-TYS 563 (819)
Q Consensus 494 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~ 563 (819)
.+.......|++..|...|+..... ... ++..+--.+...+-..++.+.|.+.|..+.+. -|... .|.
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~yl 534 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYL 534 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHH
Confidence 9999999999999999999988765 111 22223334555666677899999999998876 34433 333
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH--
Q 003451 564 SLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKG-FSPDIPTLNAMISIYG-- 640 (819)
Q Consensus 564 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~-- 640 (819)
-+...-...+...+|...+.+++..+ ..++..+..++..+.+...+..|.+-|..+.+.- ..+|..+...|.+.|.
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 33322233567788888888888764 6667777778888888888888888777776532 2357777666766553
Q ss_pred ----------hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 003451 641 ----------RRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC 710 (819)
Q Consensus 641 ----------~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 710 (819)
..+..++|+++|.+.++.. +-|.+.-|.++.+++..|++.+|..+|.++.+.. ..+..+|..++++|.
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYV 691 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHH
Confidence 2356788999999998864 6678888999999999999999999999999863 336778999999999
Q ss_pred hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH--------
Q 003451 711 RNGRMKEASRIFSEMRDS-GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYC-------- 780 (819)
Q Consensus 711 ~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~-------- 780 (819)
.+|+|-.|+++|+...+. +...+..+...|+.++.+.|++.+|.+.+..+.. ..| |....-.++-...
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~--~~p~~~~v~FN~a~v~kkla~s~lr 769 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH--LAPSNTSVKFNLALVLKKLAESILR 769 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCccchHHhHHHHHHHHHHHHHHh
Confidence 999999999999998775 3445778999999999999999999999999887 455 3332222222221
Q ss_pred -----------hcCCHhHHHHHHHHhhhcCCC
Q 003451 781 -----------KLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 781 -----------~~g~~~~A~~~~~~~~~~~p~ 801 (819)
..+..++|.++|..+...++.
T Consensus 770 ~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 770 LEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 234578888899888877665
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=2.9e-19 Score=198.79 Aligned_cols=432 Identities=11% Similarity=-0.007 Sum_probs=202.8
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003451 315 VTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGF 394 (819)
Q Consensus 315 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~ 394 (819)
..+......|.+.|++++|++.|++..+. .|+...|..+..+|.+.|++++|++.+++.++.. +.+...+..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 34556677788888888888888887763 4567778888888888888888888888887753 22455777777888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003451 395 EKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVS 474 (819)
Q Consensus 395 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 474 (819)
...|++++|+..|..+...+-..+... ..++..+.. ..+.....+..+.. +.+...+..+.. |..........
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQS-AQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcch
Confidence 888888888877766554421112211 111111111 11222222222211 111111111111 11111111111
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHH---HHhcCChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003451 475 GVFKEMKRAGFIPE-RDTFNTLISA---YSRCGSFDQAMSIYKRMLEAG-VTP-DLSTYNAVLAALARGGMWEQSEKIFA 548 (819)
Q Consensus 475 ~~~~~m~~~~~~~~-~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 548 (819)
.-+.+..+. .+. ...+..+... ....+++++|.+.|+...+.+ ..| ....+..+...+...|++++|+..|+
T Consensus 278 ~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 278 AGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 111111110 000 0001111100 011234445555555544432 111 22334444444444455555555554
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 003451 549 EMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPD 628 (819)
Q Consensus 549 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 628 (819)
+.. +.. +.....+..++.++...|++++|...|+++++.. +.+
T Consensus 356 kal-----------------------------------~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~ 398 (615)
T TIGR00990 356 KSI-----------------------------------ELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SED 398 (615)
T ss_pred HHH-----------------------------------HcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 444 432 2223334444444444555555555555444432 123
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 003451 629 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFA 708 (819)
Q Consensus 629 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 708 (819)
...+..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++.++.. +.+...|+.+..+
T Consensus 399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~ 476 (615)
T TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGEL 476 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 4445555555555555555555555555432 2233444455555555555555555555555431 2234455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-------H-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 003451 709 YCRNGRMKEASRIFSEMRDSGLVPDV-------I-TYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGY 779 (819)
Q Consensus 709 ~~~~g~~~~A~~~~~~~~~~g~~p~~-------~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 779 (819)
+...|++++|++.|++..+. .|+. . .+......+...|++++|..+++++++. .| +...+..++..+
T Consensus 477 ~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~ 552 (615)
T TIGR00990 477 LLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLL 552 (615)
T ss_pred HHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 55555555555555555542 1110 0 0111111122245555555555555542 33 333455555555
Q ss_pred HhcCCHhHHHHHHHHhhhcCCC
Q 003451 780 CKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 780 ~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
...|++++|+++++++.++.+.
T Consensus 553 ~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 553 LQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHccCHHHHHHHHHHHHHHhcc
Confidence 5555555555555555555443
No 18
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.90 E-value=1.9e-16 Score=158.55 Aligned_cols=492 Identities=11% Similarity=0.071 Sum_probs=409.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 003451 292 GSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMEL 371 (819)
Q Consensus 292 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 371 (819)
.-.-+.|..++.+..+. ++.... |..+|.+..-++.|.++++...+. ++.+...|.+-...--.+|+.+...++
T Consensus 389 lE~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 389 LEEPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred ccChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 34445577777777765 333333 344566777889999999999886 777888898888888889999999888
Q ss_pred HHHH----HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003451 372 KTQM----VEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKP--NICTFNALIKMHGNRGNFVEMMKVFDEI 445 (819)
Q Consensus 372 ~~~m----~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 445 (819)
+.+- ...|+..+...|..=...|-..|..-.+..+....+..|+.- -..+|+.-.+.|.+.+.++-|..+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 7764 456888888888888888999999999999999998887653 3578999999999999999999999988
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 003451 446 NKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLS 525 (819)
Q Consensus 446 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 525 (819)
++.- +.+...|......--..|..++...+|++....- +-....|......+-..|+...|..++..+.+.... +..
T Consensus 543 lqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-see 619 (913)
T KOG0495|consen 543 LQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEE 619 (913)
T ss_pred Hhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHH
Confidence 8753 5567788888888888999999999999998873 335566777788888899999999999999998655 788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 003451 526 TYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYS 605 (819)
Q Consensus 526 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 605 (819)
.|..-+.....+..++.|..+|.+.... .++...|..-+..---.+..++|++++++.++.. +.-..+|..+++.+.
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHH
Confidence 9999999999999999999999998874 6777788777777777899999999999998863 566788999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003451 606 KSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAED 685 (819)
Q Consensus 606 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 685 (819)
+.++++.|...|..-.+. ++..+..|..+...-.+.|.+-.|..++++..-.+ +-+...|...+.+-.+.|+.+.|..
T Consensus 697 ~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHH
Confidence 999999999999887765 34456778888888888999999999999998765 5677889999999999999999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003451 686 VLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGC 765 (819)
Q Consensus 686 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 765 (819)
+..++++. ++.+...|..-|....+.++-....+.+++ ...|+.++..++..+....++++|.++|.++++.
T Consensus 775 lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~-- 846 (913)
T KOG0495|consen 775 LMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK-- 846 (913)
T ss_pred HHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 99999876 555677888888877777776666666655 4568889999999999999999999999999984
Q ss_pred CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 766 KP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 766 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
.| +-.+|..+...+...|.-++-.+++++.....|..-+.
T Consensus 847 d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~ 887 (913)
T KOG0495|consen 847 DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGEL 887 (913)
T ss_pred CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcH
Confidence 46 56788889999999999999999999999999987544
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=3.3e-18 Score=190.35 Aligned_cols=431 Identities=11% Similarity=-0.022 Sum_probs=262.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 003451 279 SYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISA 358 (819)
Q Consensus 279 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 358 (819)
...+......+.+.|++++|...|++.+.. .|+...|..+..+|.+.|++++|++.+++..+.. +.+..+|..+..+
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a 203 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 446777888899999999999999999876 5778889999999999999999999999998863 3467789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 003451 359 YARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEM 438 (819)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 438 (819)
|...|++++|+..|......+-..+.. ...++..+.. ..+........+.. +.+...+..+.. |......+..
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~ 276 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPR 276 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcc
Confidence 999999999999988776543222222 2222222211 22333333333321 112122222222 2111111112
Q ss_pred HHHHHHHhhCCCCCCH-HHHHHHHHH---HHhcCChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 003451 439 MKVFDEINKCNCKPDI-VTWNTLLAV---FGQNGMDSEVSGVFKEMKRAG-FIP-ERDTFNTLISAYSRCGSFDQAMSIY 512 (819)
Q Consensus 439 ~~~~~~~~~~~~~~~~-~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 512 (819)
..-+.+..+. .++. ..+..+... ....+.+++|.+.|+...+.+ ..| ....+..+...+...|++++|+..|
T Consensus 277 ~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 277 PAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2222221111 1111 111111111 123578999999999999865 223 4456888888999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 003451 513 KRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEP 592 (819)
Q Consensus 513 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 592 (819)
+...+.... ....|..+...+...|++++|+..|+++.+.. +.+...|..+...+...|++++|+..+++.++.. +.
T Consensus 355 ~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~ 431 (615)
T TIGR00990 355 SKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PD 431 (615)
T ss_pred HHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-cc
Confidence 999986433 46678888888889999999999999887753 3345666666666666777777776666666543 22
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003451 593 HAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMY 672 (819)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 672 (819)
+ ...+..+...+.+.|++++|+..+++..+.. +.+...++.+..
T Consensus 432 ~-----------------------------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~ 475 (615)
T TIGR00990 432 F-----------------------------------IFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGE 475 (615)
T ss_pred C-----------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 2 3334444445555555555555555554431 333445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHh------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 003451 673 MYSRSENFARAEDVLREILAKGIKPDII------SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYA 745 (819)
Q Consensus 673 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~ 745 (819)
++...|++++|++.|++.++.....+.. .++..+..+...|++++|.+++++..+. .|+. ..+..++..+.
T Consensus 476 ~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~ 553 (615)
T TIGR00990 476 LLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLL 553 (615)
T ss_pred HHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence 5555666666666666555432110000 1111112222346666666666666553 2322 34556666666
Q ss_pred hcCChHHHHHHHHHHHH
Q 003451 746 ADSLFVEALDVVRYMIK 762 (819)
Q Consensus 746 ~~g~~~~A~~~~~~~~~ 762 (819)
..|++++|+.+++++.+
T Consensus 554 ~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 554 QQGDVDEALKLFERAAE 570 (615)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666666666665
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=1.7e-18 Score=191.47 Aligned_cols=358 Identities=9% Similarity=-0.044 Sum_probs=199.5
Q ss_pred HhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHH
Q 003451 395 EKAGKDESAMKVFEEMRSAG--CKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSE 472 (819)
Q Consensus 395 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 472 (819)
.+..+++.-.-+|....++. -..+..-...++..+...|++++|..+++.+.... +-+...+..++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 34555655555554433221 01122223334455556677777777766666543 2334445555555666677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003451 473 VSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKG 552 (819)
Q Consensus 473 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 552 (819)
|...++++.+.... +...+..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|...++.+..
T Consensus 95 A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 77777766665322 4455666666666667777777777666664322 455566666666667777777766666654
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003451 553 GRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTL 632 (819)
Q Consensus 553 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 632 (819)
.. +.+...+..+ ..+...|++++|...++.++......+......++..+...|++++|...++++.... +.+...+
T Consensus 173 ~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 173 EV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred hC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 32 1222222222 2355666666666666666554322333333344455666666666666666666543 2245555
Q ss_pred HHHHHHHHhcCChHH----HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 003451 633 NAMISIYGRRQMVAK----TNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFA 708 (819)
Q Consensus 633 ~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 708 (819)
..+...+...|++++ |...++++.+.. +.+...+..++..+...|++++|+..++++++.. +.+...+..+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 566666666666654 566666666542 3344556666666666666666666666666542 1134455556666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 709 YCRNGRMKEASRIFSEMRDSGLVPDVI-TYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 709 ~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
|.+.|++++|...++++.+. .|+.. .+..++.++...|++++|+..++++++
T Consensus 328 l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666666666666653 33332 233345556666666666666666665
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=2.6e-19 Score=189.48 Aligned_cols=301 Identities=13% Similarity=0.075 Sum_probs=204.8
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCC
Q 003451 182 MLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPT---LITYNVILNVYGKMGM 258 (819)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~ 258 (819)
.+...|+++.|...|..+.+.+. .+..++..+...+.+.|++++|..+++.+.+.+..++ ...+..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g- 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG- 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC-
Confidence 34466788888888888877643 3566777788888888888888888888776532211 245677777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhCCChHHHH
Q 003451 259 PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPD----KVTYNALLDVYGKCRRPKEAM 334 (819)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 334 (819)
++++|..+|+++.+.. ..+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 7888888888777643 23566777777777778888888888877776543221 123455666677777788887
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003451 335 QVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAG 414 (819)
Q Consensus 335 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 414 (819)
..|+++.+.. +.+...+..++..|.+.|++++|.++|+++.+.+......++..++.+|...|++++|...++++.+.
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 7777776642 23455667777777777777777777777776532222345666777777777777777777777765
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHH
Q 003451 415 CKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQ---NGMDSEVSGVFKEMKRAGFIPERD 490 (819)
Q Consensus 415 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 490 (819)
.|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 344455567777777777777777777776654 5666677766666554 446777777777777665555544
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=7.6e-18 Score=190.69 Aligned_cols=411 Identities=12% Similarity=0.046 Sum_probs=246.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 003451 353 NSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNR 432 (819)
Q Consensus 353 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 432 (819)
.-.+......|+.++|++++.+..... +.+...+..+..++...|++++|..++++.++.. +.+...+..++..+...
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 334444555666666666666655421 2233345555666666666666666666655542 22344455555555566
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003451 433 GNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIY 512 (819)
Q Consensus 433 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 512 (819)
|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.... +...+..+...+...|..+.|++.+
T Consensus 97 g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 97 GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 66666666666655442 22333 555555555555555555555555554222 3333344444455555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HccCCH---HHHHHHHHH
Q 003451 513 KRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAY-----ANGREI---DQMLALSEE 584 (819)
Q Consensus 513 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~-----~~~~~~---~~a~~~~~~ 584 (819)
+.+.. .|+.. .. + .. .....++... ...+++ ++|+..++.
T Consensus 174 ~~~~~---~p~~~--~~-l-------~~-------------------~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 174 DDANL---TPAEK--RD-L-------EA-------------------DAAAELVRLSFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred HhCCC---CHHHH--HH-H-------HH-------------------HHHHHHHHhhcccccChhHHHHHHHHHHHHHHH
Confidence 43332 11100 00 0 00 0000111111 111222 556666666
Q ss_pred HHhCC-CCCC--HHHH---HHHHHHHhcCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 003451 585 IYSGI-IEPH--AVLL---KTLILVYSKSDLLMDTERAFLELKKKGFS-PDIPTLNAMISIYGRRQMVAKTNEILHFMND 657 (819)
Q Consensus 585 ~~~~~-~~~~--~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 657 (819)
+++.. ..|+ .... ...+..+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+++.+
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 66431 1111 1111 11122334668888888888888776432 222 222246678888889999998888776
Q ss_pred CCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HhHHHHHHHHHHhcCCHHHH
Q 003451 658 SGFTPS-----LTTYNTLMYMYSRSENFARAEDVLREILAKGI-----------KPD---IISYNTVIFAYCRNGRMKEA 718 (819)
Q Consensus 658 ~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~A 718 (819)
.. |. ......+..++...|++++|.++++++..... .|+ ...+..++..+...|++++|
T Consensus 301 ~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 301 HP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred cC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 42 22 23456667778888999999999988886421 122 23456677888899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 003451 719 SRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 719 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
++.++++.... .-+...+..++..+...|++++|++.++++++ +.| +...+...+..+.+.|++++|...++++++
T Consensus 379 ~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 379 EMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999998752 22456788899999999999999999999998 467 567777888889999999999999999999
Q ss_pred cCCCCCHHH
Q 003451 798 LDPHVTKEL 806 (819)
Q Consensus 798 ~~p~~~~~~ 806 (819)
..|++..+.
T Consensus 456 ~~Pd~~~~~ 464 (765)
T PRK10049 456 REPQDPGVQ 464 (765)
T ss_pred hCCCCHHHH
Confidence 999987664
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=9.3e-17 Score=177.45 Aligned_cols=451 Identities=11% Similarity=0.081 Sum_probs=294.2
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003451 323 VYGKCRRPKEAMQVLREMKINGCLPSI--VTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKD 400 (819)
Q Consensus 323 ~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~ 400 (819)
...+.|+++.|+..|++..+. .|+. ..+ .++..+...|+.++|+..+++.... -.........+...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCH
Confidence 456778888888888887764 2332 233 6777777778888888887777621 111222333335567777888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003451 401 ESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 480 (819)
Q Consensus 401 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 480 (819)
++|+++++++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 88888888877764 224556666677777777888888877777665 444444433433443455555577777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003451 481 KRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNEL 560 (819)
Q Consensus 481 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 560 (819)
.+.. +.+...+..+...+.+.|-...|.++..+-... + +...+.-+- .+.|.+..+-... .+...
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~l~--------~~~~a~~vr~a~~---~~~~~ 260 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQLE--------RDAAAEQVRMAVL---PTRSE 260 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHHHH--------HHHHHHHHhhccc---ccccc
Confidence 7764 225556666667777777777666655442211 1 111111100 1111111111100 00000
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003451 561 TYSSLLHAYANGREIDQMLALSEEIYSGI--IEPH----AVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNA 634 (819)
Q Consensus 561 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 634 (819)
-. +-.-.+.|+.-++.++..- .++. ..+....+-++...+++.++++.|+.+...+......+...
T Consensus 261 -----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a 332 (822)
T PRK14574 261 -----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW 332 (822)
T ss_pred -----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence 00 0002345555566655421 1222 12223345567788999999999999998775545567788
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC
Q 003451 635 MISIYGRRQMVAKTNEILHFMNDSG-----FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGI-----------KPD 698 (819)
Q Consensus 635 l~~~~~~~~~~~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~ 698 (819)
++++|...+++++|..+++.+.... .+++......|..+|...+++++|..+++++.+... .|+
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 8999999999999999999986642 123444467889999999999999999999987311 122
Q ss_pred ---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHH
Q 003451 699 ---IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNS 774 (819)
Q Consensus 699 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 774 (819)
...+..++..+...|++.+|.+.++++.... .-|......++..+...|...+|+.+++.+.. +.| +..+...
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~ 489 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERA 489 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHH
Confidence 2344556777889999999999999998753 23677888999999999999999999977776 467 5667778
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHH
Q 003451 775 IVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 775 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
.+..+...|++.+|....+++.+..|++..+.
T Consensus 490 ~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 490 QAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 88899999999999999999999999987664
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=3.8e-19 Score=188.20 Aligned_cols=297 Identities=13% Similarity=0.117 Sum_probs=144.6
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCC
Q 003451 463 VFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPD---LSTYNAVLAALARGGM 539 (819)
Q Consensus 463 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 539 (819)
.+...|++++|...|+++.+.+. .+..++..+...+...|++++|..+++.+......++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34445555555555555555421 1334455555555555555555555555554321111 1334444555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003451 540 WEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLE 619 (819)
Q Consensus 540 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 619 (819)
+++|..+|+++.+.. +.+..++..++..+...|++++|...++.+.+.+..+....
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 555555555554431 22334444455555555555555555554444321111000
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003451 620 LKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDI 699 (819)
Q Consensus 620 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 699 (819)
....+..++..+.+.|++++|...++++.+.. +.+...+..++..+.+.|++++|.++++++.+.+.....
T Consensus 179 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 249 (389)
T PRK11788 179 --------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS 249 (389)
T ss_pred --------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH
Confidence 01123334444555555555555555555432 223344555555555566666666666655543211113
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003451 700 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGY 779 (819)
Q Consensus 700 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 779 (819)
.+++.++.+|.+.|++++|.+.++++.+. .|+...+..++..+.+.|++++|..+++++++. .|+...+..++..+
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~ 325 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHh
Confidence 34555555566666666666666655552 344444455555555666666666666655552 45555555444444
Q ss_pred Hh---cCCHhHHHHHHHHhhh
Q 003451 780 CK---LNQRYEAITFVNNLSK 797 (819)
Q Consensus 780 ~~---~g~~~~A~~~~~~~~~ 797 (819)
.. .|+.++|...++++.+
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hhccCCccchhHHHHHHHHHH
Confidence 42 3355555555555554
No 25
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.87 E-value=4.3e-15 Score=155.36 Aligned_cols=612 Identities=12% Similarity=0.088 Sum_probs=414.8
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCH
Q 003451 181 SMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPW 260 (819)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 260 (819)
..+...|++++|..++.++++.... ....|..|..+|-..|+.+++...+-.....++. |...|-.+.....+.| .+
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~-~i 223 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLG-NI 223 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcc-cH
Confidence 3344459999999999999988654 6789999999999999999999988777766543 7789999999999999 89
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHH----HHHHHHHhCCChHHHHHH
Q 003451 261 NKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYN----ALLDVYGKCRRPKEAMQV 336 (819)
Q Consensus 261 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~ 336 (819)
+.|.-.|.+.++.... +...+---...|-+.|+...|...|.++.....+.|..-.- ..++.|...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999987633 44444455667889999999999999999874332333222 235667777888999998
Q ss_pred HHHHHHC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------------------------CCHHHHH
Q 003451 337 LREMKIN-GCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGIT---------------------------PDVFTYT 388 (819)
Q Consensus 337 ~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---------------------------pd~~~~~ 388 (819)
++..... +-..+...++.++..|.+...++.|.....++...... ++... .
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 8887663 23346667899999999999999999998888762211 22222 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 003451 389 TLLSGFEKAGKDESAMKVFEEMRSAG--CKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQ 466 (819)
Q Consensus 389 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 466 (819)
.++-++......+....+...+.... +.-+...|.-+.++|...|++.+|+.+|..+.......+...|-.+...|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 23334445555555555555555555 3446778899999999999999999999999988666678899999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcC
Q 003451 467 NGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA--------GVTPDLSTYNAVLAALARGG 538 (819)
Q Consensus 467 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g 538 (819)
.|.+++|.+.|+..+.... .+...-..|...+.+.|+.++|.+.+..+..- +..|+....-.....+.+.|
T Consensus 462 l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 9999999999999988742 36667778888999999999999999986532 23344444445556778888
Q ss_pred CHHHHHHHHHHHHhCC-----C-----------------CCCHHHHHHHHHHHHccCCHHHHHHHHH------HHHhCCC
Q 003451 539 MWEQSEKIFAEMKGGR-----C-----------------KPNELTYSSLLHAYANGREIDQMLALSE------EIYSGII 590 (819)
Q Consensus 539 ~~~~A~~~~~~m~~~~-----~-----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~ 590 (819)
+.++=+.+-.+|.... + .........++.+-.+.++......... -....+.
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 8887666655554311 1 1111222222333333222111111110 0111111
Q ss_pred CCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCC
Q 003451 591 EPH--AVLLKTLILVYSKSDLLMDTERAFLELKKKGF-SPDIP----TLNAMISIYGRRQMVAKTNEILHFMNDS-GFTP 662 (819)
Q Consensus 591 ~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p 662 (819)
.-+ -..+..++...++.+++++|..+...+..... ..+.. .-...+.+....+++..|.+.+..|... +...
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~ 700 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYL 700 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh
Confidence 112 24566778889999999999999888775321 11222 2244555667889999999999988865 1111
Q ss_pred C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-
Q 003451 663 S---LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYN- 738 (819)
Q Consensus 663 ~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~- 738 (819)
+ ...|+..+....+.++-..-.+++..+......-+...+.........++.+..|...+-++... .||....+
T Consensus 701 ~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl 778 (895)
T KOG2076|consen 701 DVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLINL 778 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHHH
Confidence 1 23455555556666655555555555443322222333333345556778899999988887763 55532222
Q ss_pred HHHHHHH----------hcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCC
Q 003451 739 TFVASYA----------ADSLFVEALDVVRYMIKQGCKP--NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 739 ~l~~~~~----------~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
.++.++. ++-..-.++..+++..+.. .+ ...++..++.+|...|-.--|..+|+++++..|.
T Consensus 779 ~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR-~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~ 852 (895)
T KOG2076|consen 779 CLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELR-RCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPK 852 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcc
Confidence 2222221 1112456677777776632 22 4678889999999999999999999999999654
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=8.3e-18 Score=186.04 Aligned_cols=354 Identities=9% Similarity=-0.002 Sum_probs=278.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 003451 387 YTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQ 466 (819)
Q Consensus 387 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 466 (819)
...++..+.+.|++++|..+++........ +...+..++......|++++|...++++.... +.+...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 445677788899999999999998877433 45556666677778999999999999998764 4567788888899999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003451 467 NGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKI 546 (819)
Q Consensus 467 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 546 (819)
.|++++|...++++.+.. +.+...+..++..+...|++++|...++.+...... +...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 999999999999998763 235677888899999999999999999988776444 33344333 347789999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHH----HHHHHHHHHH
Q 003451 547 FAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMD----TERAFLELKK 622 (819)
Q Consensus 547 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~ 622 (819)
++.+.+....++...+..+..++...|++++|+..+++++... +.+...+..++..+...|++++ |...|++..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9998776433444555556678889999999999999998765 5567788889999999999886 7899999887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hH
Q 003451 623 KGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDI-IS 701 (819)
Q Consensus 623 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~ 701 (819)
... .+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|+..++++... .|+. ..
T Consensus 279 l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~ 354 (656)
T PRK15174 279 FNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKW 354 (656)
T ss_pred hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHH
Confidence 643 367788899999999999999999999998864 445667778889999999999999999999875 3443 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003451 702 YNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 702 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
+..+..++...|++++|.+.|+++.+. .|+.. ...+++|...+.+.++.
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~--~P~~~-----------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQA--RASHL-----------PQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--Chhhc-----------hhhHHHHHHHHHHHHHh
Confidence 445577889999999999999999873 44432 34556788777777763
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.86 E-value=1.3e-14 Score=151.91 Aligned_cols=641 Identities=11% Similarity=0.058 Sum_probs=427.1
Q ss_pred hhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 003451 142 GLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASN 221 (819)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 221 (819)
.+--+|+.+.|.+++..+.. ..+.....|..+..++-..|+.+++...+-.+...++. |...|..+.....+.
T Consensus 148 ~lfarg~~eeA~~i~~EvIk------qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIK------QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQL 220 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHH------hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhc
Confidence 33445999999999998876 23456778999999999999999999888776655444 678999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHcCCCHHH
Q 003451 222 GRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFN----TLISCCRRGSLHEE 297 (819)
Q Consensus 222 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~----~ll~~~~~~g~~~~ 297 (819)
|.+++|.-.|.+..+..+. +...+---...|-+.| +...|..-|.++.....+.|-.-+. .+++.+...++.+.
T Consensus 221 ~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G-~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANPS-NWELIYERSSLYQKTG-DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred ccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhC-hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999988533 5445555567788899 8999999999999875433333333 33556777888899
Q ss_pred HHHHHHHHHHCC-CCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC---------------------------CCH
Q 003451 298 AAGVFEEMKLAG-FSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCL---------------------------PSI 349 (819)
Q Consensus 298 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~---------------------------~~~ 349 (819)
|.+.++.....+ -..+...++.++..|.+...++.|......+...... ++.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 999998887632 2345667899999999999999999888887662111 122
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003451 350 VTYNSLISAYARDGLLEEAMELKTQMVEIG--ITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIK 427 (819)
Q Consensus 350 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 427 (819)
..+. +.-++......+...-+.....+.. +.-++..|..+..+|...|++.+|..++..+.....--+..+|-.+..
T Consensus 379 ~v~r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 379 RVIR-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hhHh-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 2211 1222333333344444444444544 334566899999999999999999999999998766667889999999
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHH
Q 003451 428 MHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKR--------AGFIPERDTFNTLISAY 499 (819)
Q Consensus 428 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--------~~~~~~~~~~~~l~~~~ 499 (819)
+|...|.+++|.+.|+.+.... +-+...--.|...+.+.|+.++|.+.+..+.. .+..|+........+.+
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 9999999999999999998763 44566667788889999999999999988542 23455555666677788
Q ss_pred HhcCChHHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHH------HHHH
Q 003451 500 SRCGSFDQAMSIYKRMLEAG----------------------VTPDLSTYNAVLAALARGGMWEQSEKIF------AEMK 551 (819)
Q Consensus 500 ~~~g~~~~A~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~------~~m~ 551 (819)
...|+.++-..+-..|+... ..........++.+-.+.++.....+-. .-..
T Consensus 537 ~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e 616 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVE 616 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhh
Confidence 88898887666555554321 1111222223333333333322221111 1111
Q ss_pred hCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHc-
Q 003451 552 GGRCKPNE--LTYSSLLHAYANGREIDQMLALSEEIYSGIIEP-HA----VLLKTLILVYSKSDLLMDTERAFLELKKK- 623 (819)
Q Consensus 552 ~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 623 (819)
..+..-+. ..+..++.++++.+.+++|..+...+.....-. +. .+-...+.+.+..+++..|...++.+...
T Consensus 617 ~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~ 696 (895)
T KOG2076|consen 617 LRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQF 696 (895)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 12222222 234567778899999999999998887654221 11 22233456677889999999999998753
Q ss_pred CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 003451 624 GFSP---DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDII 700 (819)
Q Consensus 624 ~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 700 (819)
+... -...|+...+...+.++-.--...+..+....-.-+...+.....-....+.+..|+..+-++... .|+..
T Consensus 697 ~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~P 774 (895)
T KOG2076|consen 697 QFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSP 774 (895)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCc
Confidence 1111 233455555555555543333333333332211111222333344456788899999988877765 35532
Q ss_pred HHH-HHHHHHH----------hcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-
Q 003451 701 SYN-TVIFAYC----------RNGRMKEASRIFSEMRDSG-LVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP- 767 (819)
Q Consensus 701 ~~~-~l~~~~~----------~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p- 767 (819)
..+ .++-++. ++-..-.+..++++..+.. ..-..+++.+++.+|-..|-..-|+.+|+++++....+
T Consensus 775 l~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~ 854 (895)
T KOG2076|consen 775 LINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDV 854 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcccc
Confidence 222 2222222 1112445666666665531 11245688899999999999999999999999842110
Q ss_pred ------C----HHHHHHHHHHHHhcCCHhHHHHHHHHh
Q 003451 768 ------N----QNTYNSIVDGYCKLNQRYEAITFVNNL 795 (819)
Q Consensus 768 ------~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 795 (819)
+ ..+-..|.-.|..+|..+.|..++++-
T Consensus 855 ~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 855 TDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred ccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhh
Confidence 1 233446677899999999999998864
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=2.6e-16 Score=178.24 Aligned_cols=426 Identities=9% Similarity=0.034 Sum_probs=280.5
Q ss_pred CCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003451 311 SPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTL 390 (819)
Q Consensus 311 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 390 (819)
+.+.....-.+......|+.++|++++.+.... .+.+...+..+...+...|++++|.+++++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 445555666777888999999999999998763 23456679999999999999999999999998863 3356677788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh
Q 003451 391 LSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMD 470 (819)
Q Consensus 391 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 470 (819)
+..+...|+.++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+...+...|..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence 889999999999999999998873 34556 8888999999999999999999999874 44566777788888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---H
Q 003451 471 SEVSGVFKEMKRAGFIPERD------TFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMW---E 541 (819)
Q Consensus 471 ~~a~~~~~~m~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~ 541 (819)
++|++.++.... .|+.. ....++......+. ...+++ +
T Consensus 167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~------------------------------~~~~r~~~ad 213 (765)
T PRK10049 167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR------------------------------SEKERYAIAD 213 (765)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc------------------------------ChhHHHHHHH
Confidence 999998876553 22210 01111111111000 111111 3
Q ss_pred HHHHHHHHHHhC-CCCCCHH-HH----HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHH
Q 003451 542 QSEKIFAEMKGG-RCKPNEL-TY----SSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTER 615 (819)
Q Consensus 542 ~A~~~~~~m~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 615 (819)
+|++.++.+.+. ...|+.. .+ ...+..+...+++++|+..|+++.+.+.+........+..+|...|++++|+.
T Consensus 214 ~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 214 RALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 444444444422 0111110 00 00022233445555555555555544321111111223445555566666666
Q ss_pred HHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-----------CCCCH---HHHHHHHHHHHhcC
Q 003451 616 AFLELKKKGFSP---DIPTLNAMISIYGRRQMVAKTNEILHFMNDSG-----------FTPSL---TTYNTLMYMYSRSE 678 (819)
Q Consensus 616 ~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------~~p~~---~~~~~l~~~~~~~g 678 (819)
.|+++.+..... .......+..++...|++++|.+.++.+.+.. ..|+. ..+..++..+...|
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 665555432111 12334445555666677777777766666531 01232 24556777888899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 003451 679 NFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEALDVV 757 (819)
Q Consensus 679 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 757 (819)
++++|++.++++.... +.+...+..++..+...|++++|++.++++.+ +.|+ ...+...+..+...|++++|+.++
T Consensus 374 ~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 374 DLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999998763 33578888999999999999999999999988 4565 456667777888999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHH
Q 003451 758 RYMIKQGCKPNQNTYNSIVDGY 779 (819)
Q Consensus 758 ~~~~~~~~~p~~~~~~~l~~~~ 779 (819)
+++++ ..|+......+-..+
T Consensus 451 ~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 451 DDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HHHHH--hCCCCHHHHHHHHHH
Confidence 99998 467655444444433
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=2.8e-15 Score=165.80 Aligned_cols=439 Identities=13% Similarity=0.115 Sum_probs=227.4
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHH
Q 003451 289 CRRGSLHEEAAGVFEEMKLAGFSPDK--VTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLE 366 (819)
Q Consensus 289 ~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 366 (819)
..+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.... ..........+...|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 456677777777777777652 332 233 6666677777777777777777521 1112222233345666677777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003451 367 EAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEIN 446 (819)
Q Consensus 367 ~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 446 (819)
+|+++|+++.+.... +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 777777777776332 3455556666777777777777777777665 3444444444444444555555777777777
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH------HHHHHHHHH---H--hcCC---hHHHHHHH
Q 003451 447 KCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERD------TFNTLISAY---S--RCGS---FDQAMSIY 512 (819)
Q Consensus 447 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~~~l~~~~---~--~~g~---~~~A~~~~ 512 (819)
+.. +.+...+..+..++.+.|-...|.++.++-.+. +.+... .....++.- . ...+ .+.|+.-+
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 663 445666677777777777777777665542211 000000 000111000 0 0111 23344444
Q ss_pred HHHHHC-CCCCCH-HH----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003451 513 KRMLEA-GVTPDL-ST----YNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIY 586 (819)
Q Consensus 513 ~~~~~~-~~~~~~-~~----~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 586 (819)
+.+... +..|.. .. ..-.+-++...|++.++++.|+.+...+.+....+-..+.++|...+++++|..++.++.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 444432 111221 11 122334566667777777777777766544444566666777777777777777777765
Q ss_pred hCCC-----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 003451 587 SGII-----EPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPD-IPTLNAMISIYGRRQMVAKTNEILHFMNDSGF 660 (819)
Q Consensus 587 ~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 660 (819)
.... +++......|..+|...+++++|..+++.+.+. .|. ...+ |.. ....
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~----------~~~-----------~~~p 411 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVY----------GLP-----------GKEP 411 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEecc----------CCC-----------CCCC
Confidence 5321 112222345555666666666666666665542 110 0000 000 0000
Q ss_pred CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 003451 661 TPSLT-TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VITYN 738 (819)
Q Consensus 661 ~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~ 738 (819)
.||-. .+..++..+...|++.+|++.++++.... +-|......+...+...|...+|++.++.+.. +.|+ ..+..
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~ 488 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILER 488 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHH
Confidence 11111 12223344455555555555555555432 22455555555555555555555555544443 2332 22344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 003451 739 TFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
..+.++...|++++|..+.+.+.+
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh
Confidence 445555555555555555555554
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.82 E-value=6.4e-13 Score=133.70 Aligned_cols=581 Identities=13% Similarity=0.084 Sum_probs=415.1
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003451 188 KVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALV 267 (819)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~ 267 (819)
+...|+-++....+.++. ++..|-+-.+.=-..|++..|..+..+=-+. ++.+...|---++ .. ..+.|..+.
T Consensus 266 DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeaiR----Lh-p~d~aK~vv 338 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAIR----LH-PPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHHh----cC-ChHHHHHHH
Confidence 345555555555554433 3334433333334445555554444332222 2223333332222 12 344444444
Q ss_pred HHHHhCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 003451 268 EGMKSAGVKPDS-YTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCL 346 (819)
Q Consensus 268 ~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 346 (819)
....+. -|++ ..|. .+---..+...-.++++..++. ++.++..|-. -....+.++|+.++.+..+. ++
T Consensus 339 A~Avr~--~P~Sv~lW~---kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKa----AVelE~~~darilL~rAvec-cp 407 (913)
T KOG0495|consen 339 ANAVRF--LPTSVRLWL---KAADLESDTKNKKRVLRKALEH-IPRSVRLWKA----AVELEEPEDARILLERAVEC-CP 407 (913)
T ss_pred HHHHHh--CCCChhhhh---hHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHH----HHhccChHHHHHHHHHHHHh-cc
Confidence 444432 1222 1121 1111122333444566666665 3434444443 34556777799999988875 55
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHH
Q 003451 347 PSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMR----SAGCKPNICTF 422 (819)
Q Consensus 347 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~ 422 (819)
.+...|. +|++..-++.|.+++++..+. ++-|...|.+-...--..|+.+...+++++.+ ..|+..+...|
T Consensus 408 ~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqW 482 (913)
T KOG0495|consen 408 QSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQW 482 (913)
T ss_pred chHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHH
Confidence 4555554 455666789999999999886 67788888887777778899999998887643 56888888888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003451 423 NALIKMHGNRGNFVEMMKVFDEINKCNCKPD--IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYS 500 (819)
Q Consensus 423 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 500 (819)
..=...|-..|..--+..+...+...|+.-. ..||..-.+.|.+.+..+-|..+|...++- ++-+...|...+..--
T Consensus 483 l~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek 561 (913)
T KOG0495|consen 483 LKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEK 561 (913)
T ss_pred HHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHH
Confidence 8888888888999888888888887765432 568888899999999999999999988875 2335566766666666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003451 501 RCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLA 580 (819)
Q Consensus 501 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 580 (819)
..|..+....+|+++...-.+ ....|......+...|+...|..++....+.. +-+...|...+..-....+++.|..
T Consensus 562 ~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred hcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHH
Confidence 678999999999999886332 55666677778888999999999999988764 3466788888888889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 003451 581 LSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGF 660 (819)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 660 (819)
++.+.... .++..+|..-+....-.+..++|.+++++.++. ++.-...|..+...+.+.++++.|.+.|..-.+. +
T Consensus 640 llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-c 715 (913)
T KOG0495|consen 640 LLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-C 715 (913)
T ss_pred HHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-C
Confidence 99998773 567777777777777889999999999988875 2323567888888899999999999998876664 3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003451 661 TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTF 740 (819)
Q Consensus 661 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 740 (819)
+-....|..+...-.+.|++-+|..++++..-.+.+ +...|...|.+-.+.|+.+.|..+..++++. +..+...|..-
T Consensus 716 P~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEa 793 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEA 793 (913)
T ss_pred CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHH
Confidence 556677888888888899999999999999877543 7889999999999999999999999888875 44455567777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 741 VASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 741 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
++..-+.++-....+.+++ .+-|+.+...++..++...+++.|+++|+++.+.+|++-+.
T Consensus 794 I~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~ 853 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDA 853 (913)
T ss_pred HHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchH
Confidence 7666666664444444433 45677888899999999999999999999999999998766
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=4.4e-15 Score=141.49 Aligned_cols=453 Identities=14% Similarity=0.184 Sum_probs=243.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003451 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMG--MPWNKIMALVEGMKSAGVKPDSYTFNT 284 (819)
Q Consensus 207 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g--~~~~~a~~~~~~~~~~~~~p~~~~~~~ 284 (819)
.+.+=+.|+.. ...|...++.-+|++|...|++.+...-..|+...+-.+ ...-.-++.|-.|.+.|-. ...+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--
Confidence 34455666553 356778888888888888887766666555555433322 1111122233333333311 11111
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 003451 285 LISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGL 364 (819)
Q Consensus 285 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 364 (819)
+.|+..+ ++-+.. +.+..+|..+|.+.||.-..+.|.+++++........+..+||.+|.+-.-.
T Consensus 191 ------K~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~-- 255 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS-- 255 (625)
T ss_pred ------ccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh--
Confidence 2222221 222211 2244455555555555555555555555555444444555555555432211
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH-HH
Q 003451 365 LEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESA----MKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVE-MM 439 (819)
Q Consensus 365 ~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~ 439 (819)
...++..+|....+.||..|+|+++.+..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ +.
T Consensus 256 --~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 256 --VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred --ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 1144555555555555555555555555555544432 3444445555555555555555554444444322 11
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003451 440 KVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFI----PERDTFNTLISAYSRCGSFDQAMSIYKRM 515 (819)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 515 (819)
.++.++ .+.+..+.+. .|...|...+..|.+..+.+.|.++...+
T Consensus 334 ~~i~dI-------------------------------~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll 382 (625)
T KOG4422|consen 334 SWINDI-------------------------------QNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLL 382 (625)
T ss_pred HHHHHH-------------------------------HHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 222221 1122222222 24456777888888888888888887766
Q ss_pred HHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 003451 516 LEAG----VTPD---LSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSG 588 (819)
Q Consensus 516 ~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 588 (819)
.... +.|+ ...|..+....|+....+.-...|+.|.-.-+.|+..+...++++....+.++-.-+++.++...
T Consensus 383 ~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 383 KTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred HcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence 5431 2222 34466777888888889999999999988878899999999999988899999888899888887
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CChHH-HHHHHHHHhhCCCCCCHHH
Q 003451 589 IIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRR-QMVAK-TNEILHFMNDSGFTPSLTT 666 (819)
Q Consensus 589 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~-A~~~~~~~~~~~~~p~~~~ 666 (819)
|...+..+...+... +....+.|+...-..+-....+. -++.+ ....-.++.+. .-....
T Consensus 463 ght~r~~l~eeil~~----------------L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~ 524 (625)
T KOG4422|consen 463 GHTFRSDLREEILML----------------LARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATS 524 (625)
T ss_pred hhhhhHHHHHHHHHH----------------HhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhH
Confidence 755444443333333 33332333322111111111110 01111 12222333333 334445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003451 667 YNTLMYMYSRSENFARAEDVLREILAKGI-KPD---IISYNTVIFAYCRNGRMKEASRIFSEMRDSG 729 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 729 (819)
.+.++..+.+.|..++|.++|.-+.+.+- -|. .....-+++.-.+.+..-.|..+++-|.+.+
T Consensus 525 l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 525 LNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 66666677777888888777777754322 122 2333345555666677777777777776654
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=9.5e-15 Score=139.26 Aligned_cols=297 Identities=18% Similarity=0.215 Sum_probs=200.6
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH--cCCHH-HHHHHHHHHHHcCC-------------------CCC
Q 003451 185 KEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYAS--NGRYR-EAVMVFKKMEEEGC-------------------KPT 242 (819)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~-~A~~~~~~m~~~~~-------------------~~~ 242 (819)
.+|.+.++.-+|+.|.+.|.+.+..+--.|.+.-+- ..+.- .-.+.|-.|...|- +-+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT 206 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKT 206 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCC
Confidence 467777777788888877777777766666554332 22211 12334444443331 225
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 003451 243 LITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLD 322 (819)
Q Consensus 243 ~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 322 (819)
..+|..||.++|+.. ..+.|.+++++......+.+..+||.+|.+-. +....++..+|....+.||..|+|+++.
T Consensus 207 ~et~s~mI~Gl~K~~-~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFS-SLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred chhHHHHHHHHHHHH-hHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 567888888888887 78888888888888777888888888876533 2223678888888888888888888888
Q ss_pred HHHhCCChHHH----HHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHH-HHHHHHHHHH----cCCC---C-CHHHHHH
Q 003451 323 VYGKCRRPKEA----MQVLREMKINGCLPSIVTYNSLISAYARDGLLEE-AMELKTQMVE----IGIT---P-DVFTYTT 389 (819)
Q Consensus 323 ~~~~~g~~~~A----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~---p-d~~~~~~ 389 (819)
+..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ |..++.+... ..++ | |...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 88888877654 5677778888888888888888888888777643 3333333332 2222 2 4445667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003451 390 LLSGFEKAGKDESAMKVFEEMRSAG----CKPN---ICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLA 462 (819)
Q Consensus 390 l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 462 (819)
.+..|....+.+.|.++..-+.... +.++ ..-|..+....|.....+.-+..++.+.-+-.-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 7777777888888877776655321 1222 23455566677777777888888888877666677777777778
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCC
Q 003451 463 VFGQNGMDSEVSGVFKEMKRAGFI 486 (819)
Q Consensus 463 ~~~~~g~~~~a~~~~~~m~~~~~~ 486 (819)
+..-.|.++-.-+++.+++..|..
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhh
Confidence 777788888777777777776543
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.6e-13 Score=132.69 Aligned_cols=473 Identities=12% Similarity=0.086 Sum_probs=345.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003451 316 TYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFE 395 (819)
Q Consensus 316 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~ 395 (819)
.|--..+-=..++++..|..+|+...... ..++..|-..+..-.++..+..|..++++.+..-...|.. |--.+..--
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE 152 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHH
Confidence 33333333344566778888888887753 4577778888888888899999999999888753333333 333344445
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003451 396 KAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSG 475 (819)
Q Consensus 396 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 475 (819)
..|++..|.++|+...+- .|+...|++.|+.-.+.+.++.|..++++..-. .|++.+|--....-.++|+..-+..
T Consensus 153 ~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHH
Confidence 678999999999988764 789999999999988999999999999988764 6889999888888889999999999
Q ss_pred HHHHHHHC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH------
Q 003451 476 VFKEMKRA-GF-IPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTP-DLSTYNAVLAALARGGMWEQSEKI------ 546 (819)
Q Consensus 476 ~~~~m~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~------ 546 (819)
+|+...+. |- ..+...|.++...-.++..++.|.-+|+-.+++=..- ....|..+...--+-|+.......
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 98887764 11 1122345555555556778899999999888763221 245566666555555654433332
Q ss_pred --HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHH--------HHHHHhcCCCHHHHHH
Q 003451 547 --FAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHA-VLLKT--------LILVYSKSDLLMDTER 615 (819)
Q Consensus 547 --~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~--------l~~~~~~~~~~~~a~~ 615 (819)
|+.+... .+.|..+|-..+..-...|+.+...++|+.++..-.+... ..+.. .+..-....+.+.+.+
T Consensus 309 ~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 309 FQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344443 2667888888888888899999999999999886433221 11211 1122245688899999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003451 616 AFLELKKKGFSPDIPTLNAMISIY----GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREIL 691 (819)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 691 (819)
+|+..++. ++....++.-+--+| .++.++..|.+++.... |..|...++...+..-.+.++++.+.+++++.+
T Consensus 388 vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 388 VYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999884 344555555444444 57889999999999887 568999999999999999999999999999999
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003451 692 AKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG-LVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQN 770 (819)
Q Consensus 692 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 770 (819)
+-+. -+-.+|...+..-...|+.+.|..+|+-++... +.-....|...+..-...|.++.|..+++++++. .+...
T Consensus 465 e~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~k 541 (677)
T KOG1915|consen 465 EFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVK 541 (677)
T ss_pred hcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccch
Confidence 9753 367889888888889999999999999998752 2222346778888888999999999999999984 45566
Q ss_pred HHHHHHHHHH-----hcC-----------CHhHHHHHHHHhhhcCCC
Q 003451 771 TYNSIVDGYC-----KLN-----------QRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 771 ~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~~p~ 801 (819)
+|.+.+..-. +.| ....|.++|+++...--+
T Consensus 542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~ 588 (677)
T KOG1915|consen 542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKE 588 (677)
T ss_pred HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHh
Confidence 7877776654 444 567889999988765433
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=1.2e-15 Score=146.14 Aligned_cols=490 Identities=14% Similarity=0.113 Sum_probs=290.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhH-HHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHH
Q 003451 286 ISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTY-NALLDVYGKCRRPKEAMQVLREMKINGCLPS----IVTYNSLISAYA 360 (819)
Q Consensus 286 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~ 360 (819)
...|.....+.+|+..++-+++...-|+.-.. -.+-..+.+..++.+|++.++.....-...+ +...+.+.-.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 33455555666666666666665554544322 1233455566666666666666554311111 223344444556
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--------HHHHHHHHcc
Q 003451 361 RDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTF--------NALIKMHGNR 432 (819)
Q Consensus 361 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~ 432 (819)
+.|.++.|+..|+...+. .|+..+-..|+-++...|+-++..+.|.+|+.....+|..-| ..|+.-..+.
T Consensus 288 q~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred ecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 666666666666665553 455555444555555566666666666666655443333211 1111111111
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHhcCCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003451 433 GNFVEMMKVFDEINKCNCKPDIV----TWNTLLAVFGQNGMD----SEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGS 504 (819)
Q Consensus 433 g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~----~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 504 (819)
..++.|.+.+ +.+.. |-..+|.-- -.-++ +-.++.++.-+...+. ...-..-...+.+.|+
T Consensus 366 -------d~lk~~ek~~-ka~aek~i~ta~kiiapv-i~~~fa~g~dwcle~lk~s~~~~la--~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 366 -------DHLKNMEKEN-KADAEKAIITAAKIIAPV-IAPDFAAGCDWCLESLKASQHAELA--IDLEINKAGELLKNGD 434 (840)
T ss_pred -------HHHHHHHHhh-hhhHHHHHHHHHHHhccc-cccchhcccHHHHHHHHHhhhhhhh--hhhhhhHHHHHHhccC
Confidence 1112221111 11111 000011000 00000 1111111111100000 0000112235778899
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 003451 505 FDQAMSIYKRMLEAGVTPDLSTYNAVLA-ALAR-GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALS 582 (819)
Q Consensus 505 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 582 (819)
++.|.++++-..+..-+.-...-+.|-. .|.+ ..++.+|..+-+.....+ .-+......-.+.-...|++++|.+.|
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFY 513 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHH
Confidence 9999999988877633322222222222 2333 346777777766665432 223333332233344578999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 003451 583 EEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTP 662 (819)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 662 (819)
++.+... ......+..+...+...|++++|++.|-++..- +..+...+..+.+.|....+..+|++++-+.... ++.
T Consensus 514 keal~nd-asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~ 590 (840)
T KOG2003|consen 514 KEALNND-ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPN 590 (840)
T ss_pred HHHHcCc-hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCC
Confidence 9998764 233444455666788899999999999887542 1237778888999999999999999999877664 567
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003451 663 SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVA 742 (819)
Q Consensus 663 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 742 (819)
|+.++..|...|-+.|+-..|.+.+-+--+. ++-+..+...|...|....-+++|+.+|++..- +.|+..-|-.++.
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmia 667 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIA 667 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHH
Confidence 8889999999999999999999887665554 455788888888888888899999999998765 7889888887665
Q ss_pred HH-HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 003451 743 SY-AADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 743 ~~-~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
.| .+.|++.+|.++|+....+ +.-|...+.-|++.+...|. .+|.++.+++.+
T Consensus 668 sc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~klek 721 (840)
T KOG2003|consen 668 SCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADKLEK 721 (840)
T ss_pred HHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHHHHH
Confidence 54 5689999999999999874 55588888888888877775 355555555443
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1.5e-14 Score=138.69 Aligned_cols=484 Identities=13% Similarity=0.096 Sum_probs=295.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC----HH
Q 003451 206 IDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYN-VILNVYGKMGMPWNKIMALVEGMKSAGVKPD----SY 280 (819)
Q Consensus 206 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~----~~ 280 (819)
.+..+...|..-|..+....+|+..++-+.+...-|+.-... .+.+.+.+.. .+.+|+++|......-...+ ..
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr-~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKR-EFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehh-hHHHHHHHHHHHHhhccccchhhHHH
Confidence 344556666777777888889999998888776666655433 2445566666 78999999887775432222 23
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhh--------H
Q 003451 281 TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVT--------Y 352 (819)
Q Consensus 281 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~--------~ 352 (819)
+.+.+...+.+.|.++.|...|+..... .|+..+--.|+-++...|+.++..+.|.+|......+|..- -
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 4555556688899999999999998876 57877666666677788999999999999876432222211 1
Q ss_pred HHHHHHHHHcCCH-----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003451 353 NSLISAYARDGLL-----------EEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICT 421 (819)
Q Consensus 353 ~~li~~~~~~g~~-----------~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 421 (819)
..|+.--.++..+ ++++-.-.+++.--+.||-. .| .+-+.+.++.-... +.-...
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~g-~dwcle~lk~s~~~--~la~dl 421 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------AG-CDWCLESLKASQHA--ELAIDL 421 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------cc-cHHHHHHHHHhhhh--hhhhhh
Confidence 2222222221111 11111111111111111111 00 01111111111100 000011
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003451 422 FNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQ--NGMDSEVSGVFKEMKRAGFIPERDTFNTLISAY 499 (819)
Q Consensus 422 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 499 (819)
-..-..-+.+.|+++.|+++++-+.+..-+.-...-+.|...+.. -.++.+|...-+..+... .-+......-....
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIA 500 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCcee
Confidence 111223466888999998888887765433333444444433333 234556666555544321 11333333333344
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003451 500 SRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQML 579 (819)
Q Consensus 500 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 579 (819)
...|++++|.+.|++.+...-. .....-.+.-.+-..|++++|++.|-++... +..+......+.+.|....+..+|+
T Consensus 501 f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 4568888999888888875222 1112222223466788888888888776532 2345666777778888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 003451 580 ALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSG 659 (819)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 659 (819)
+++.+.... ++.++.++..+...|.+.|+-..|.+.+-+--.. ++-+..+...|..-|....-+++++..|++..-
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal-- 654 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-- 654 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--
Confidence 888887664 4777888888888888888888887766554443 344677777777778888888888888887664
Q ss_pred CCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 003451 660 FTPSLTTYNTLMYM-YSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR 714 (819)
Q Consensus 660 ~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 714 (819)
+.|+..-|..++.. +.+.|++++|.++++++.+. ++.|......|++.+...|-
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 46888888776654 45678888888888887765 56677777777777766653
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.7e-11 Score=119.03 Aligned_cols=472 Identities=10% Similarity=0.091 Sum_probs=267.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003451 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLI 286 (819)
Q Consensus 207 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~ll 286 (819)
+...|.....-=-.++++..|+++|++.++.. ..+...|--.+.+=.++. ....|..++++....=...| ..|.-.+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk-~vNhARNv~dRAvt~lPRVd-qlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNK-QVNHARNVWDRAVTILPRVD-QLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhh-hHhHHHHHHHHHHHhcchHH-HHHHHHH
Confidence 56666666666667888899999999998764 346677777777666666 67777777776665322211 1222233
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHH
Q 003451 287 SCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLE 366 (819)
Q Consensus 287 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 366 (819)
..--..|++..|.++|+.-..- .|+..+|++.|+.=.+...++.|..++++.+- +.|++.+|--....-.+.|++.
T Consensus 149 ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHH
Confidence 3333345555666666555543 45555666665555555556666666655544 3455555555555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003451 367 EAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEIN 446 (819)
Q Consensus 367 ~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 446 (819)
.|..+|....+. +. |... +...+++....-..+..++.|.-+|+-.+
T Consensus 225 ~aR~VyerAie~-~~-~d~~-------------------------------~e~lfvaFA~fEe~qkE~ERar~iykyAl 271 (677)
T KOG1915|consen 225 LARSVYERAIEF-LG-DDEE-------------------------------AEILFVAFAEFEERQKEYERARFIYKYAL 271 (677)
T ss_pred HHHHHHHHHHHH-hh-hHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555442 11 1111 11223333333333334444444444333
Q ss_pred hCCCCCC--HHHHHHHHHHHHhcCChHHHHH--------HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003451 447 KCNCKPD--IVTWNTLLAVFGQNGMDSEVSG--------VFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRML 516 (819)
Q Consensus 447 ~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~--------~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 516 (819)
..- +.+ ...|..+...--+.|+...... -++.+++.+ +-|-.+|-..++.-...|+.+...++|++.+
T Consensus 272 d~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAI 349 (677)
T KOG1915|consen 272 DHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAI 349 (677)
T ss_pred Hhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 321 111 2222222222223333222211 133344443 2366677667777777777888888887777
Q ss_pred HCCCCCCH--HHHHHHHH--------HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----ccCCHHHHHHHH
Q 003451 517 EAGVTPDL--STYNAVLA--------ALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYA----NGREIDQMLALS 582 (819)
Q Consensus 517 ~~~~~~~~--~~~~~l~~--------~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~ 582 (819)
.. ++|-. ..|...|. .-....+.+.+.++|+..++. ++-...||..+--.|+ ++.++..|.+++
T Consensus 350 an-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiL 427 (677)
T KOG1915|consen 350 AN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKIL 427 (677)
T ss_pred cc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 64 22211 12222211 112356777778888777763 4445556555444333 466777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-C
Q 003451 583 EEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGF-T 661 (819)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~ 661 (819)
...+. .-|...++...+..-.+.+.++.+..+|.+.++-++. +..+|...+..-...|+.+.|..+|+....... .
T Consensus 428 G~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ld 504 (677)
T KOG1915|consen 428 GNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALD 504 (677)
T ss_pred HHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccc
Confidence 76654 3566777777777777778888888888887776533 666777777766777888888888887776421 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH-----hcC-----------CHHHHHHHHHHH
Q 003451 662 PSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC-----RNG-----------RMKEASRIFSEM 725 (819)
Q Consensus 662 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~ 725 (819)
-....|.+.+.--...|.+++|..+++++++. .+...+|..++..-. +.| +...|..+|+++
T Consensus 505 mpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferA 582 (677)
T KOG1915|consen 505 MPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERA 582 (677)
T ss_pred cHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHH
Confidence 12234566666667778888888888888765 334556666554333 233 456677777776
Q ss_pred HH
Q 003451 726 RD 727 (819)
Q Consensus 726 ~~ 727 (819)
..
T Consensus 583 n~ 584 (677)
T KOG1915|consen 583 NT 584 (677)
T ss_pred HH
Confidence 54
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=2.8e-13 Score=131.81 Aligned_cols=223 Identities=11% Similarity=0.024 Sum_probs=174.1
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003451 571 NGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNE 650 (819)
Q Consensus 571 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 650 (819)
-.|+.-.+..-++..++... .+...|..+..+|...++.++....|++..+.+.. +..+|..-...+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHH
Confidence 46777788888888877653 33334777778888999999999999998887543 56667666677777788999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003451 651 ILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL 730 (819)
Q Consensus 651 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 730 (819)
-|++.+... +-+...|..+..+..+.+.++++...|++.++. ++-.+..|+.....+..++++++|.+.|+..++ +
T Consensus 416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--L 491 (606)
T KOG0547|consen 416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--L 491 (606)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--h
Confidence 999988763 445567888888888999999999999999986 555689999999999999999999999999987 3
Q ss_pred CCC-------HHHH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 003451 731 VPD-------VITY--NTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 731 ~p~-------~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 800 (819)
.|+ ...+ ..++. +.-.+++..|+++++++++ +.| ....|..++......|+.++|+++|++...+..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 443 2222 12221 2234889999999999998 567 567788999999999999999999999887754
Q ss_pred CC
Q 003451 801 HV 802 (819)
Q Consensus 801 ~~ 802 (819)
.-
T Consensus 569 t~ 570 (606)
T KOG0547|consen 569 TE 570 (606)
T ss_pred hH
Confidence 43
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.9e-12 Score=123.20 Aligned_cols=384 Identities=14% Similarity=0.051 Sum_probs=273.0
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-
Q 003451 414 GCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTF- 492 (819)
Q Consensus 414 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~- 492 (819)
+...|...+....-.+.+.|....|+..|.+....- +-.=..|-.|... ..+.+. ...... +...+...+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~l---it~~e~----~~~l~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSEL---ITDIEI----LSILVV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHh---hchHHH----HHHHHh-cCcccchHHH
Confidence 344566666666666778888999999888876531 2222233332222 112221 222221 122122211
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 003451 493 -NTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRC--KPNELTYSSLLHAY 569 (819)
Q Consensus 493 -~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~l~~~~ 569 (819)
-.+..++....+.+++.+-.......|+.-+...-+....+.....++++|+.+|+++.+.+. -.|..+|+.++-.
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv- 308 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV- 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH-
Confidence 234456666678888888888888888876666666666677788999999999999987631 1245566665533
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003451 570 ANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTN 649 (819)
Q Consensus 570 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 649 (819)
+..+ ..+..+.+-.....+-.+.+...+++.|.-.++.++|...|++.++.+.. ....|+.+.+-|....+...|+
T Consensus 309 -~~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 309 -KNDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred -Hhhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 2222 12222222222222445667778888899999999999999999987533 5678999999999999999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003451 650 EILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG 729 (819)
Q Consensus 650 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 729 (819)
+-++...+.. +-|-..|-.++++|.-.+...-|+-+|+++.... +-|...|.+|+.+|.+.++.++|++.|++....|
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 9999999864 6688899999999999999999999999999863 3379999999999999999999999999999865
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCC
Q 003451 730 LVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ----GCKPN--QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 730 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 803 (819)
-. +...+..++..|-+.++.++|...+++-++. |...+ ..+..-|+..+.+.+++++|..+..+....++ .
T Consensus 463 dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~--e 539 (559)
T KOG1155|consen 463 DT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET--E 539 (559)
T ss_pred cc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc--h
Confidence 33 5578999999999999999999999987762 32222 22233467778899999999999999888743 3
Q ss_pred HHHHHHHHHHHHh
Q 003451 804 KELECKLSDRIAK 816 (819)
Q Consensus 804 ~~~~~~l~~~l~~ 816 (819)
...-..|++.+++
T Consensus 540 ~eeak~LlReir~ 552 (559)
T KOG1155|consen 540 CEEAKALLREIRK 552 (559)
T ss_pred HHHHHHHHHHHHH
Confidence 3444567776664
No 39
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.67 E-value=4.4e-10 Score=113.60 Aligned_cols=312 Identities=12% Similarity=0.131 Sum_probs=180.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc
Q 003451 467 NGMDSEVSGVFKEMKRAGFIPE------RDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPD---LSTYNAVLAALARG 537 (819)
Q Consensus 467 ~g~~~~a~~~~~~m~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 537 (819)
.|+..+....|.+..+. +.|. ...|..+.+.|-..|+++.|..+|++...-..+-- ..+|......-.++
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 45555566666665543 2221 12456666677777777777777777665433211 34455555555666
Q ss_pred CCHHHHHHHHHHHHhCCC-----------C------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003451 538 GMWEQSEKIFAEMKGGRC-----------K------PNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTL 600 (819)
Q Consensus 538 g~~~~A~~~~~~m~~~~~-----------~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 600 (819)
.+++.|+++++...-..- + -+...|...++.-...|-++....+|+.+++..+. ++......
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~Ny 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINY 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 667777776666542110 0 12234455555555567777777788887775533 23333333
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh---cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH--H
Q 003451 601 ILVYSKSDLLMDTERAFLELKKKGFSPDI-PTLNAMISIYGR---RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYM--Y 674 (819)
Q Consensus 601 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~ 674 (819)
+..+....-++++.++|++-+..-.-|++ ..|+..+.-+.+ ...++.|..+|++.++ |.+|...-+..++.+ -
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 34444555567777777765554323333 234544443322 2357888888888887 556554433333322 2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCC
Q 003451 675 SRSENFARAEDVLREILAKGIKPD--IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVIT---YNTFVASYAADSL 749 (819)
Q Consensus 675 ~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~---~~~l~~~~~~~g~ 749 (819)
.+.|-...|+++++++... +++. ..+|+..|.--...=-+...+.+|+++++. -|+..+ ...++..-++.|.
T Consensus 597 Ee~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGE 673 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGE 673 (835)
T ss_pred HHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhh
Confidence 3457777888888886653 3332 456776664444333455566777777773 455543 3344555667788
Q ss_pred hHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCH
Q 003451 750 FVEALDVVRYMIKQGCKP--NQNTYNSIVDGYCKLNQR 785 (819)
Q Consensus 750 ~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~ 785 (819)
.+.|..++.-..+. ..| +...|...-..-.+.|+-
T Consensus 674 idRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 674 IDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred HHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCH
Confidence 88888888777664 345 567777777777788873
No 40
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.6e-12 Score=127.81 Aligned_cols=278 Identities=15% Similarity=0.069 Sum_probs=224.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003451 521 TPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTL 600 (819)
Q Consensus 521 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 600 (819)
.-+........+.+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-.++++. .+.....|..+
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 3456666667777888999999999999998864 666777777777888999988888888888775 36678888999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 003451 601 ILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENF 680 (819)
Q Consensus 601 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 680 (819)
+-.|...|...+|++.|.+....+.. -...|-.+...|+-.|..++|...+....+.- +-...-+-.+.--|.+.+++
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccH
Confidence 99999999999999999998754311 35679999999999999999999988877641 11222233355568889999
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCChHHHH
Q 003451 681 ARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS--GLVP----DVITYNTFVASYAADSLFVEAL 754 (819)
Q Consensus 681 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p----~~~~~~~l~~~~~~~g~~~~A~ 754 (819)
+.|.++|.++... .+-|+..++-+.-.....+.+.+|..+|+..+.. ...+ -..+++.++.++.+.+++++|+
T Consensus 397 kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999999999875 3446888888888888889999999999998842 1111 2346889999999999999999
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 755 DVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 755 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
..+++.+.. .| |..++.+++..|...|.++.|++.|.+++.+.|.+.-.
T Consensus 476 ~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~ 525 (611)
T KOG1173|consen 476 DYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFI 525 (611)
T ss_pred HHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHH
Confidence 999999984 55 88999999999999999999999999999999998433
No 41
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.67 E-value=1.6e-09 Score=109.64 Aligned_cols=509 Identities=12% Similarity=0.110 Sum_probs=310.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 003451 280 YTFNTLISCCRRGSLHEEAAGVFEEMKLA-GFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISA 358 (819)
Q Consensus 280 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 358 (819)
.+|...+..+.++|++......|+..+.. .+.--...|...+......|-++-+..++++..+. +...-+..|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 45666666677777777777777776654 11222345666666666667777777777777553 33335666777
Q ss_pred HHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 003451 359 YARDGLLEEAMELKTQMVEIG------ITPDVFTYTTLLSGFEKAGKD---ESAMKVFEEMRSAGCKPN--ICTFNALIK 427 (819)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~g------~~pd~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~--~~~~~~l~~ 427 (819)
+++.+++++|.+.+...+... .+.+-..|.-+.....+.-+. -....+++.+..+ -+| ...|++|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 777777777777776665321 122233444444443333222 1223334433332 123 356777777
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc----------------CC------hHHHHHHHHHHHHCCC
Q 003451 428 MHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQN----------------GM------DSEVSGVFKEMKRAGF 485 (819)
Q Consensus 428 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~------~~~a~~~~~~m~~~~~ 485 (819)
.|.+.|.+++|..+|++.... ..++.-+..+.++|.+- |+ .+-...-|+.+.....
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 777777777777777776553 22333333333333211 11 1122333333333211
Q ss_pred -----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003451 486 -----------IPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTP------DLSTYNAVLAALARGGMWEQSEKIFA 548 (819)
Q Consensus 486 -----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 548 (819)
+-+...|..-+. +..|+..+-...|.++... +.| -...|..+.+.|-..|+++.|..+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 112233333222 2356777778888887764 111 23568888999999999999999999
Q ss_pred HHHhCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC----------C-------CHHHHHHHHHHHhcCC
Q 003451 549 EMKGGRCKPN---ELTYSSLLHAYANGREIDQMLALSEEIYSGIIE----------P-------HAVLLKTLILVYSKSD 608 (819)
Q Consensus 549 ~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~~~~~ 608 (819)
+..+...+-- ..+|..-...=.++.+++.|+++.+.....--. | +..++...++.....|
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 9987543322 234444444455678899999998887542111 1 1234455666667788
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHh---cCCHHHHH
Q 003451 609 LLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLT-TYNTLMYMYSR---SENFARAE 684 (819)
Q Consensus 609 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~---~g~~~~A~ 684 (819)
-++....+|+.+++..+. .+......+..+..+.-++++.+++++-...--.|+.. .|+..+.-+.+ ...++.|.
T Consensus 492 tfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred cHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 999999999999986544 44444444555666777899999998876654455553 56766665543 34799999
Q ss_pred HHHHHHHHCCCCCCHh--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHH
Q 003451 685 DVLREILAKGIKPDII--SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV--ITYNTFVASYAADSLFVEALDVVRYM 760 (819)
Q Consensus 685 ~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 760 (819)
.+|++.++ |++|... .|-.....--+.|-...|..+++++... +.+.. ..|+.++.--...=-.....++|+++
T Consensus 571 dLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYeka 648 (835)
T KOG2047|consen 571 DLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKA 648 (835)
T ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Confidence 99999998 5766532 2333333334568888999999997653 43322 36666665544443456677889999
Q ss_pred HHcCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHhhhc-CCCCCH
Q 003451 761 IKQGCKPNQ---NTYNSIVDGYCKLNQRYEAITFVNNLSKL-DPHVTK 804 (819)
Q Consensus 761 ~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~ 804 (819)
++. -||. ......++.-.+.|..+.|+.++....+. +|....
T Consensus 649 Ie~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~ 694 (835)
T KOG2047|consen 649 IES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTT 694 (835)
T ss_pred HHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCCh
Confidence 883 5654 34556677778999999999999998877 454433
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5.7e-11 Score=115.31 Aligned_cols=366 Identities=14% Similarity=0.089 Sum_probs=226.8
Q ss_pred CCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--H
Q 003451 309 GFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVF--T 386 (819)
Q Consensus 309 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--~ 386 (819)
+...|...+-.....+.+.|....|+..|.+.... .+-.-.+|..|.... .+.+.+. .... |...|.. .
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~----~l~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILS----ILVV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHH----HHHh-cCcccchHHH
Confidence 33445444444444566778889999998887654 223444444443332 2222222 2221 1222211 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHH
Q 003451 387 YTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNC--KPDIVTWNTLLAVF 464 (819)
Q Consensus 387 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~ 464 (819)
-.-+..++-...+.+++.+-.+.....|++.....-+....+.-...++|+|+.+|+++.+... --|..+|..++-+
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv- 308 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV- 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH-
Confidence 1224455666678888888888888888877766666666677788899999999999987631 1144555554432
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003451 465 GQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSE 544 (819)
Q Consensus 465 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 544 (819)
++.... +..+.+-.-.--.-...|+..+.+.|+-.++.++|..+|++.++.+.. ....|+.+.+-|...++...|+
T Consensus 309 -~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 309 -KNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred -HhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 222111 111111111111223457777778888888888888888888876554 5677777888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 003451 545 KIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKG 624 (819)
Q Consensus 545 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 624 (819)
+.++...+.+ +.|-..|..|.++|.-.+-..=|+-.|++..... +.|...+..++.+|.+.++.++|+..|......|
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 8888887753 5567778888888877777777777777777654 5567777777777777777777777777777655
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003451 625 FSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS----GFTPS--LTTYNTLMYMYSRSENFARAEDVLREIL 691 (819)
Q Consensus 625 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 691 (819)
-. +...+..|+..|.+.++.++|...+++-.+. |...+ .....-|..-+.+.+++++|..+.....
T Consensus 463 dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 463 DT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred cc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 22 4466777777777777777777776665542 21111 1122224444556666666665554443
No 43
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.63 E-value=6.3e-12 Score=131.22 Aligned_cols=551 Identities=14% Similarity=0.079 Sum_probs=261.6
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC
Q 003451 199 LHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPD 278 (819)
Q Consensus 199 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~ 278 (819)
+...|+.|+-.+|..+|..||..|+.+.|- +|.-|.-.....+...++.++.+....+ +.+.+. .|-
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~An-d~Enpk-----------ep~ 82 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEAN-DAENPK-----------EPL 82 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccc-cccCCC-----------CCc
Confidence 333455555555555555555555555554 5555544444444445555555544444 322221 344
Q ss_pred HHHHHHHHHHHHcCCCHHH-----------------------HHHHHHHHHHC-CCCCCHHhHHHHHHHHHhCCChHHHH
Q 003451 279 SYTFNTLISCCRRGSLHEE-----------------------AAGVFEEMKLA-GFSPDKVTYNALLDVYGKCRRPKEAM 334 (819)
Q Consensus 279 ~~~~~~ll~~~~~~g~~~~-----------------------a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 334 (819)
+.||..|+.+|.+.||... -..++..+... ++-||.. ..+....-.|-++.++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLL 159 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHH
Confidence 5555555555555555433 22222221111 1122222 2222333445555555
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003451 335 QVLREMKINGCLPSIVTYNSLISAYAR-DGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSA 413 (819)
Q Consensus 335 ~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 413 (819)
+++..+...... . +....++-... ...+++-..+.....+ .|+..+|..++..-...|+.+.|..++.+|++.
T Consensus 160 kll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 160 KLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 555544221000 0 11111222222 2234444444444433 477888888888888888888888888888888
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 003451 414 GCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFN 493 (819)
Q Consensus 414 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 493 (819)
|++.+.+-|-.|+-+ .++...+..++..|...|+.|+..|+...+..+..+|....+ +.|.+ ....+.
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~sq-~~hg~t 301 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEGSQ-LAHGFT 301 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------ccccc-hhhhhh
Confidence 888777766666554 677777788888888888888888888777777776652221 12222 222233
Q ss_pred HHHHHHHhcCChHHHHHHH------------HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CCC
Q 003451 494 TLISAYSRCGSFDQAMSIY------------KRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGR--C-KPN 558 (819)
Q Consensus 494 ~l~~~~~~~g~~~~A~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~-~~~ 558 (819)
+-...-.-.| ..|.+.+ ++..-.|+......|...+. ...+|+-++.+.+...+..-- . ..+
T Consensus 302 Aavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~ 378 (1088)
T KOG4318|consen 302 AAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQN 378 (1088)
T ss_pred HHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcch
Confidence 2222222233 1222221 11112244434444444333 233677777777776665321 1 123
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHH--HHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH----HcCCCCC---H
Q 003451 559 ELTYSSLLHAYANGREIDQMLALSE--EIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELK----KKGFSPD---I 629 (819)
Q Consensus 559 ~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~---~ 629 (819)
...|..++..|...-+..-...++. +.+... .+......+.....+. +...+.+-+..+. .+.+.+- .
T Consensus 379 V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~--l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~ 455 (1088)
T KOG4318|consen 379 VDAFGALLRQYFRRIERHICSRIYYAGQGLSLN--LNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIA 455 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh--hchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhh
Confidence 3345455544433222111111111 111110 0111111111111111 1111111111111 1111110 0
Q ss_pred ----HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhHHH
Q 003451 630 ----PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK--GIKPDIISYN 703 (819)
Q Consensus 630 ----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~ 703 (819)
..-+.++..+.+..+..+++..-++....-+ + ..|..++..+......+.|..+.++.... .+..|...+.
T Consensus 456 h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~ 532 (1088)
T KOG4318|consen 456 HLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMT 532 (1088)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHH
Confidence 0122333444444444444443333322211 1 45667777777777777777777766532 2233455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003451 704 TVIFAYCRNGRMKEASRIFSEMRDSG-LVPD-VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCK 781 (819)
Q Consensus 704 ~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 781 (819)
.+.+.+.+.+....+.++++++.+.- ..|. ..++..+.......|+.+.-.++.+-+...|+.-. .-+.....+
T Consensus 533 ~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLr 608 (1088)
T KOG4318|consen 533 SLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLR 608 (1088)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEee
Confidence 67777777777777777777776531 1221 23444555556666666665555555555554432 223334446
Q ss_pred cCCHhHHHHHHHHhh
Q 003451 782 LNQRYEAITFVNNLS 796 (819)
Q Consensus 782 ~g~~~~A~~~~~~~~ 796 (819)
.++...|.+..+...
T Consensus 609 kdd~s~a~ea~e~~~ 623 (1088)
T KOG4318|consen 609 KDDQSAAQEAPEPEE 623 (1088)
T ss_pred ccchhhhhhcchHHH
Confidence 666666666665543
No 44
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=1.3e-11 Score=115.28 Aligned_cols=497 Identities=14% Similarity=0.105 Sum_probs=303.0
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHH
Q 003451 288 CCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEE 367 (819)
Q Consensus 288 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 367 (819)
-+....++..|..+++.-...+-.-...+---+..++...|++++|..++.-+.+. ..++...+..|...+.-.|.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHH
Confidence 34455677778877776654432222233334556677889999999888887765 45666777777777777888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 003451 368 AMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINK 447 (819)
Q Consensus 368 A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 447 (819)
|..+..+..+ +......|+....+.|+-++-..+.+.+... ..-..+|..+....-.+++|++++.++..
T Consensus 110 A~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8877655332 3334444555566778877777776666542 12233444444445568889999988876
Q ss_pred CCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 003451 448 CNCKPDIVTWNTLL-AVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLST 526 (819)
Q Consensus 448 ~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 526 (819)
. .|+-...|..+ -.|.+..-++-+.++++...+. ++.+....+..+....+.=.-..|.+-.+.+...+.. .
T Consensus 180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~--- 252 (557)
T KOG3785|consen 180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E--- 252 (557)
T ss_pred c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---
Confidence 5 45555555544 4566777788888888877665 3334445555444444433333344444444433211 1
Q ss_pred HHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003451 527 YNAVLAALARG-----GMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLI 601 (819)
Q Consensus 527 ~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 601 (819)
-..+..+++. ..-+.|++++--+.+. .| ..-..|+--|.+.+++.+|..+.+++.- ..|...++..++
T Consensus 253 -~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv 325 (557)
T KOG3785|consen 253 -YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV 325 (557)
T ss_pred -chhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH
Confidence 1223333433 2347788887776653 23 2334556668889999999888777643 234444444444
Q ss_pred HHH-----hcCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 003451 602 LVY-----SKSDLLMDTERAFLELKKKGFSPDI-PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYS 675 (819)
Q Consensus 602 ~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 675 (819)
.+- .....+.-|...|+.+-+.+..-|. ..-.++++.+.-..++++++..+..+...-...|.+.+| +..+++
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~ 404 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKL 404 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHH
Confidence 322 2223345566666666555444332 234556666666677899998888887765455555554 788999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHH
Q 003451 676 RSENFARAEDVLREILAKGIKPDIISY-NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVIT-YNTFVASYAADSLFVEA 753 (819)
Q Consensus 676 ~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~A 753 (819)
..|++.+|+++|-++....++ |..+| ..|+.+|.+.|..+-|.+++-++-. ..+... +..++..|.+.+.+--|
T Consensus 405 atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyya 480 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYA 480 (557)
T ss_pred HhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887755445 44455 4566889999999999887766532 223333 34556678899999888
Q ss_pred HHHHHHHHHcCCCCCHHHHH-------HHHHHHHhc---CCHhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Q 003451 754 LDVVRYMIKQGCKPNQNTYN-------SIVDGYCKL---NQRYEAITFVNNLSKLDPHVTKELECKLSDRIAK 816 (819)
Q Consensus 754 ~~~~~~~~~~~~~p~~~~~~-------~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~~ 816 (819)
.+.+..+.. ..|++..|. .+...++.. |...+..+-.-.++...|+.....+.+.++..++
T Consensus 481 aKAFd~lE~--lDP~pEnWeGKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~nsq~E~mikvvrkwa~ 551 (557)
T KOG3785|consen 481 AKAFDELEI--LDPTPENWEGKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPNSQCEFMIKVVRKWAE 551 (557)
T ss_pred HHhhhHHHc--cCCCccccCCccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 888888877 456655443 233333322 3344444444455556666655555555555443
No 45
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.63 E-value=2e-10 Score=118.95 Aligned_cols=439 Identities=13% Similarity=0.061 Sum_probs=240.2
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003451 347 PSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALI 426 (819)
Q Consensus 347 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 426 (819)
.+...|..|.-+....|+++.+.+.|++....-+. ....|..+...|...|.-..|..++++-....-.|+..+...++
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 45555666666666777777777777776553222 33456666666667777777777776655443223322222222
Q ss_pred -HHHH-ccCCHHHHHHHHHHHhhC--CC--CCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHHCCCCCCH
Q 003451 427 -KMHG-NRGNFVEMMKVFDEINKC--NC--KPDIVTWNTLLAVFGQN-----------GMDSEVSGVFKEMKRAGFIPER 489 (819)
Q Consensus 427 -~~~~-~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~~ 489 (819)
..|. +.+.+++++.+-.++... +. ......|..+.-+|... ....++++.+++..+.+.. |.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-Cc
Confidence 2222 445555555555554431 10 11223333333333211 1223455556665554333 22
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003451 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAY 569 (819)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 569 (819)
....-+.--|+..++.+.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+.....- .-|......-+..-
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIE 557 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhh
Confidence 22222333455566677777777666666444466666666666666667777776666554320 11111111111112
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCChHH
Q 003451 570 ANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKK--KGFSPDIPTLNAMISIYGRRQMVAK 647 (819)
Q Consensus 570 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ 647 (819)
..-++.++++.....++..- ...- .....++-....+....+.- ......+.++..+....... .+.
T Consensus 558 ~~~~~~e~~l~t~~~~L~~w--------e~~~-~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~--~~~ 626 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALW--------EAEY-GVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ--LKS 626 (799)
T ss_pred hhcccHHHHHHHHHHHHHHH--------Hhhh-hHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh--hhh
Confidence 22445555544443333210 0000 00000000011111111100 00011112222222211110 111
Q ss_pred HHHHHHHHhhCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 003451 648 TNEILHFMNDSGFT--PS------LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEAS 719 (819)
Q Consensus 648 A~~~~~~~~~~~~~--p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 719 (819)
+..-.. +....+. |+ ...|......+.+.++.++|...+.+..+. ..-....|......+...|..++|.
T Consensus 627 ~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 627 AGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred cccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHH
Confidence 100000 1111111 22 123456677788999999999998888775 2346778888888889999999999
Q ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHH--HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHh
Q 003451 720 RIFSEMRDSGLVPDVI-TYNTFVASYAADSLFVEALD--VVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNL 795 (819)
Q Consensus 720 ~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 795 (819)
+.|..... +.|+.. ....++.++.+.|+-.-|.. ++..+.+ +.| +...|..++..+.+.|+.++|.+.|..+
T Consensus 705 ~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 705 EAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 99999887 566654 77889999999998777777 9999998 567 8999999999999999999999999999
Q ss_pred hhcCCCCCHH
Q 003451 796 SKLDPHVTKE 805 (819)
Q Consensus 796 ~~~~p~~~~~ 805 (819)
.++.+.++..
T Consensus 781 ~qLe~S~PV~ 790 (799)
T KOG4162|consen 781 LQLEESNPVL 790 (799)
T ss_pred HhhccCCCcc
Confidence 9999887654
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=1.9e-12 Score=136.06 Aligned_cols=289 Identities=11% Similarity=0.051 Sum_probs=180.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCCHHHH
Q 003451 501 RCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNE--LTYSSLLHAYANGREIDQM 578 (819)
Q Consensus 501 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~~~~a 578 (819)
..|+++.|.+.+....+.... ....+-.......+.|+.+.|.+.+.+..+. .|+. .........+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHH
Confidence 346666666666555443221 1222333344555566666666666665543 2222 2222234555566666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHhcCChHHHHHHHHH
Q 003451 579 LALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLN----AMISIYGRRQMVAKTNEILHF 654 (819)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~A~~~~~~ 654 (819)
...++.+.+.. +.+...+..+...+...|++++|.+.+..+.+.+.. +...+. .........+..+++.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 66666666654 444555666666666777777777777766665433 222221 111111222223333444444
Q ss_pred HhhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH---HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003451 655 MNDSG---FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIIS---YNTVIFAYCRNGRMKEASRIFSEMRDS 728 (819)
Q Consensus 655 ~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 728 (819)
+.+.. .+.+...+..++..+...|+.++|.+.+++..+.. ||... ...........++.+.+.+.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 44431 12377888889999999999999999999999863 33321 122222334457888999999988874
Q ss_pred CCCC-CH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 003451 729 GLVP-DV--ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 729 g~~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
.| |+ .....+++.+.+.|++++|.++++++......|+..++..++..+.+.|+.++|.+++++.+..
T Consensus 329 --~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 329 --VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred --CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44 33 5667999999999999999999995443336799988999999999999999999999997554
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=3e-12 Score=133.66 Aligned_cols=286 Identities=10% Similarity=0.065 Sum_probs=185.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHccCCHHHHH
Q 003451 502 CGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYS--SLLHAYANGREIDQML 579 (819)
Q Consensus 502 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 579 (819)
.|+++.|.+.+....+..-. ....|........+.|+++.|...+.++.+. .|+..... .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 46666666555544332111 1122222223335566666666666666543 33332222 2234455666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHH
Q 003451 580 ALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDI-------PTLNAMISIYGRRQMVAKTNEIL 652 (819)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~ 652 (819)
..++++.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666666554 444556666666666666666666666666665433211 12222333333344556666666
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003451 653 HFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP 732 (819)
Q Consensus 653 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 732 (819)
+.+-+. .+.+......+..++...|+.++|.+++++..+. .++.... ++.+....++.+++.+.+++..+.. .-
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 665443 2557778888999999999999999999998874 4454322 2344456689999999999988752 23
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC
Q 003451 733 DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLD 799 (819)
Q Consensus 733 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 799 (819)
|...+..++..+...|++++|.+.++++.+ ..|+...+..++..+.+.|+.++|...+++.+.+-
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 556788899999999999999999999998 57998888899999999999999999999987653
No 48
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.61 E-value=5.3e-12 Score=131.77 Aligned_cols=86 Identities=21% Similarity=0.207 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003451 451 KPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAV 530 (819)
Q Consensus 451 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 530 (819)
.++..+|..++..-...|+.+.|..++.+|.+.|++.+.+-|..|+-+ .++...+..+++-|.+.|+.|+.+|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 467777777777777777777777777777777777777666666544 66677777777777777777777777766
Q ss_pred HHHHHhcCC
Q 003451 531 LAALARGGM 539 (819)
Q Consensus 531 ~~~~~~~g~ 539 (819)
+-.+.++|.
T Consensus 278 vip~l~N~~ 286 (1088)
T KOG4318|consen 278 VIPQLSNGQ 286 (1088)
T ss_pred HHhhhcchh
Confidence 666555443
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=2.9e-13 Score=137.53 Aligned_cols=209 Identities=11% Similarity=0.001 Sum_probs=161.6
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003451 591 EPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTL 670 (819)
Q Consensus 591 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 670 (819)
+..+.+|..++++|.-+++.+.|++.|++.++.+. -...+|+.+..-+.....+|.|...|...+... +-+-..|-.+
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGl 495 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGL 495 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhh
Confidence 44455666666666666666666666666665421 155667777777777888889988888877531 1222346667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003451 671 MYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLF 750 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 750 (819)
+-.|.+.++++.|+-.|+++.+-+. -+.+....+...+-+.|+.|+|+.+++++...... |+..-...+..+...+++
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcch
Confidence 8889999999999999999998542 25777778888899999999999999999875333 555666677888999999
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 751 VEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 751 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
++|+..++++.+ +.| +..++..++..|.+.|+.+.|+..+.-|.+++|....+
T Consensus 574 ~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i 627 (638)
T KOG1126|consen 574 VEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQI 627 (638)
T ss_pred HHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchh
Confidence 999999999998 677 67888899999999999999999999999999987664
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=6.1e-15 Score=147.17 Aligned_cols=261 Identities=14% Similarity=0.144 Sum_probs=105.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcC
Q 003451 529 AVLAALARGGMWEQSEKIFAEMKGGRCKP-NELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKS 607 (819)
Q Consensus 529 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 607 (819)
.+...+.+.|++++|++++++......+| +...|..+.......++++.|+..++++...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 33555566666666666664433332122 23333334444455666666666666666543 2234445555555 566
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003451 608 DLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSG-FTPSLTTYNTLMYMYSRSENFARAEDV 686 (819)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 686 (819)
+++++|.+++....+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777665544 2455666777777888888888888888876532 345667788888888999999999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003451 687 LREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCK 766 (819)
Q Consensus 687 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 766 (819)
++++++.. +.|......++..+...|+.+++.++++...+.. ..|+..+..++.++...|+.++|+.+++++.+. .
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~ 244 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--N 244 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--S
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--c
Confidence 99998863 2257788888888889999999888888877652 334457778888999999999999999998874 4
Q ss_pred C-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 003451 767 P-NQNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 767 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
| |+.+...+++++...|+.++|..+.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 5 788888999999999999999998888765
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=7.8e-11 Score=117.51 Aligned_cols=497 Identities=13% Similarity=0.077 Sum_probs=271.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003451 178 VLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMG 257 (819)
Q Consensus 178 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 257 (819)
.+++=+..+.++..|.-+.+.+...+ -|+..-.-+..+|.-.|.+++|..+...-.-. ..|..+......++.+..
T Consensus 21 ~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk 96 (611)
T KOG1173|consen 21 RLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLK 96 (611)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHH
Confidence 33333334445555555555554433 34444455667777777777777766554322 236666666666777666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHH
Q 003451 258 MPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVL 337 (819)
Q Consensus 258 ~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 337 (819)
+|+.|..++.+... .-+...|-.--. ...-..+.+. ++.. .......+-.-...|....+.++|...|
T Consensus 97 -~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~ar~~Y 164 (611)
T KOG1173|consen 97 -EWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREEARDKY 164 (611)
T ss_pred -HHHHHHHHhcccch---hhcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHHHHHHH
Confidence 67777776653211 001111100000 0000000000 0000 0001111111123455566777888777
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003451 338 REMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIG----ITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSA 413 (819)
Q Consensus 338 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 413 (819)
.+.... |...+..+...-. . ..-.+.+.|+.+.... ..-|+.....+.........-+.....-++..-.
T Consensus 165 ~~Al~~----D~~c~Ea~~~lvs-~-~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~ 238 (611)
T KOG1173|consen 165 KEALLA----DAKCFEAFEKLVS-A-HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLI 238 (611)
T ss_pred HHHHhc----chhhHHHHHHHHH-H-HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhh
Confidence 776543 3333333222111 0 1111222222222211 0112222222222211010001111111111112
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 003451 414 GCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFN 493 (819)
Q Consensus 414 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 493 (819)
+..-+........+.+...+++.+..++++++.+.. ++....+-.-|..+...|+..+-..+-.+|++. .+-...+|-
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchh
Confidence 234456666777777888899999999999888764 566667777777888888888888877888776 334677888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 003451 494 TLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGR 573 (819)
Q Consensus 494 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 573 (819)
++.-.|...|+.++|+++|.+....+.. =...|..+.+.|.-.|..|+|...+...-+.- +-...-+..+.--|...+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhc
Confidence 8888888889999999999887765322 34678888888888888999988887765431 111111223334467778
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHhcCChHH
Q 003451 574 EIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKK--GFSP----DIPTLNAMISIYGRRQMVAK 647 (819)
Q Consensus 574 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~ 647 (819)
..+-|.+.|.+..... +.++..++.++-+....+.+.+|..+|+..+.. .+.+ -..+++.|..+|.+.+.+++
T Consensus 395 n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 8888888888877653 566777777777777777788887777766521 0000 22345556666666666666
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 003451 648 TNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNT 704 (819)
Q Consensus 648 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 704 (819)
|+..+++.+... +.+..++.+++..|...|+++.|.+.|.+.+. +.|+..+-..
T Consensus 474 AI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~ 527 (611)
T KOG1173|consen 474 AIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISE 527 (611)
T ss_pred HHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHH
Confidence 666666665542 44555666666666666666666666666554 3444433333
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.58 E-value=7.1e-12 Score=131.71 Aligned_cols=289 Identities=11% Similarity=0.042 Sum_probs=140.6
Q ss_pred cCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003451 432 RGNFVEMMKVFDEINKCNCKPD-IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMS 510 (819)
Q Consensus 432 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 510 (819)
.|+++.|.+.+.+..+. .|+ ...+-....++.+.|+.+.|.+.+++..+....+...........+...|+++.|.+
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 44555555554444332 122 222222334444445555555555554433211111222223455555666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHH---HccCCHHHHHHHHHHHH
Q 003451 511 IYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSL-LHAY---ANGREIDQMLALSEEIY 586 (819)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-~~~~---~~~~~~~~a~~~~~~~~ 586 (819)
.++.+.+.... +...+..+...+.+.|++++|.+++..+.+.+.. +...+..+ ..++ ...+..+++
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~-------- 244 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEG-------- 244 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence 66666655433 4455555666666666666666666666655422 22211111 0000 111111111
Q ss_pred hCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC
Q 003451 587 SGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGF---SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS 663 (819)
Q Consensus 587 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 663 (819)
...+..+.+... +.+...+..++..+...|+.++|.+++++..+.. ||
T Consensus 245 ---------------------------~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd 295 (409)
T TIGR00540 245 ---------------------------IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GD 295 (409)
T ss_pred ---------------------------HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CC
Confidence 111222221110 1245555566666666666666666666666542 33
Q ss_pred HHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003451 664 LTT---YNTLMYMYSRSENFARAEDVLREILAKGIKPDI--ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYN 738 (819)
Q Consensus 664 ~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 738 (819)
... ...........++.+.+.+.+++..+.. +-|. ....++...+.+.|++++|.+.|+........|+...+.
T Consensus 296 ~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~ 374 (409)
T TIGR00540 296 DRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA 374 (409)
T ss_pred cccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH
Confidence 221 1111122233456666677776666542 2234 455566677777777777777777433322466666666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 003451 739 TFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.++..+.+.|+.++|.+++++...
T Consensus 375 ~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 375 MAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777776543
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=1.8e-11 Score=119.51 Aligned_cols=82 Identities=16% Similarity=0.085 Sum_probs=56.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHHc
Q 003451 285 LISCCRRGSLHEEAAGVFEEMKLAGFSPD-KVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPS-IVTYNSLISAYARD 362 (819)
Q Consensus 285 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~ 362 (819)
..+-|.++|.+++|++.+.+.+.. .|| ..-|.....+|...|+|+++.+.--+..+. .|+ +.++.--.+++-+.
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 334577788888888888888876 456 667777788888888888887777766653 333 34455555566666
Q ss_pred CCHHHHHH
Q 003451 363 GLLEEAME 370 (819)
Q Consensus 363 g~~~~A~~ 370 (819)
|++++|+.
T Consensus 197 g~~~eal~ 204 (606)
T KOG0547|consen 197 GKFDEALF 204 (606)
T ss_pred ccHHHHHH
Confidence 77766653
No 54
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=1.3e-11 Score=128.90 Aligned_cols=258 Identities=15% Similarity=0.072 Sum_probs=159.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003451 465 GQNGMDSEVSGVFKEMKRAGFIPERDTF--NTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQ 542 (819)
Q Consensus 465 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 542 (819)
.+.|+++.|.+.+.++.+. .|+.... ......+...|++++|.+.++.+.+.... +...+..+...|.+.|+|++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHH
Confidence 5556666666666665543 2232211 12345666677777777777777666543 56666666777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003451 543 SEKIFAEMKGGRCKPNELTYSSLL-HAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELK 621 (819)
Q Consensus 543 A~~~~~~m~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 621 (819)
|.+++..+.+.+..+ ......+- .+| ..++.......+.+....+++.+.
T Consensus 206 a~~~l~~l~k~~~~~-~~~~~~l~~~a~----------------------------~~l~~~~~~~~~~~~l~~~w~~lp 256 (398)
T PRK10747 206 LLDILPSMAKAHVGD-EEHRAMLEQQAW----------------------------IGLMDQAMADQGSEGLKRWWKNQS 256 (398)
T ss_pred HHHHHHHHHHcCCCC-HHHHHHHHHHHH----------------------------HHHHHHHHHhcCHHHHHHHHHhCC
Confidence 777777777654322 11111110 010 001111111122233333333332
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 003451 622 KKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIIS 701 (819)
Q Consensus 622 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 701 (819)
+. .+.+......++..+...|+.++|.+++++..+. +++.... ++.+....++.+++.+..++..+.. +-|...
T Consensus 257 ~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l 330 (398)
T PRK10747 257 RK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLL 330 (398)
T ss_pred HH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHH
Confidence 22 1336667777788888888888888888887774 4555322 2333445588888888888888763 335677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 702 YNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 702 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+..+...|.+.|++++|.+.|+.+.+ ..|+...+..++..+.+.|+.++|..++++...
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77888888888888888888888887 578888888888888888888888888888764
No 55
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.55 E-value=1.6e-09 Score=110.01 Aligned_cols=472 Identities=15% Similarity=0.164 Sum_probs=253.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH
Q 003451 282 FNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYAR 361 (819)
Q Consensus 282 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 361 (819)
|..++. |...+++...++..+.+++. ++--..+.....-.++..|+-++|....+.-... ...+.+.|..+.-.+-.
T Consensus 11 F~~~lk-~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~-d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALK-CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN-DLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHH-HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhcc-CcccchhHHHHHHHHhh
Confidence 444444 34557777777777777763 3333344444444456677778887777766554 33466777777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 003451 362 DGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKV 441 (819)
Q Consensus 362 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 441 (819)
..++++|++.|......+ +.|...+..+.-.-.+.|+++........+.+.. +.....|..++.++--.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888887777653 2244455555544556666666666666655541 12334555556666666666666666
Q ss_pred HHHHhhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003451 442 FDEINKCN-CKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGV 520 (819)
Q Consensus 442 ~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 520 (819)
+++..+.. -.|+...+......+- -.....+.|..+.|.+.+..-... +
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly-----------------------------~n~i~~E~g~~q~ale~L~~~e~~-i 215 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLY-----------------------------QNQILIEAGSLQKALEHLLDNEKQ-I 215 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHH-----------------------------HHHHHHHcccHHHHHHHHHhhhhH-H
Confidence 66665443 1344433332221111 011223344444554444332221 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHccCCHHHHH-HHHHHHHhCCCCCCHHHHH
Q 003451 521 TPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHA-YANGREIDQML-ALSEEIYSGIIEPHAVLLK 598 (819)
Q Consensus 521 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~ 598 (819)
.-....-..-...+.+.+++++|..++..++.. .||...|...+.. +.+-.+.-+++ .+|....+. ++.......
T Consensus 216 ~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~R 292 (700)
T KOG1156|consen 216 VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRR 292 (700)
T ss_pred HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-Ccccccchh
Confidence 101111122234455666666666666666654 3455444443332 22222323333 333333322 111111111
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh----hCC----------CCCCH
Q 003451 599 TLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMN----DSG----------FTPSL 664 (819)
Q Consensus 599 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~----------~~p~~ 664 (819)
.-+.......-.+....++....+.|+++ ++..+...|-.....+-..++.-.+. ..| -+|+.
T Consensus 293 lplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Ptt 369 (700)
T KOG1156|consen 293 LPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTT 369 (700)
T ss_pred ccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchH
Confidence 11111111111222334445555555442 23333333322111111111111111 110 14555
Q ss_pred HH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003451 665 TT--YNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFV 741 (819)
Q Consensus 665 ~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 741 (819)
.. +..++..|-+.|+++.|..+++..++. .|+ +..|..-.+.+...|++++|..++++..+.. .+|...-..-+
T Consensus 370 llWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcA 446 (700)
T KOG1156|consen 370 LLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCA 446 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHH
Confidence 44 455777889999999999999999985 455 5667677799999999999999999998743 22332222455
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-C-----HHHHHHH--HHHHHhcCCHhHHHHHHHHhhh
Q 003451 742 ASYAADSLFVEALDVVRYMIKQGCKP-N-----QNTYNSI--VDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 742 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~-----~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
.-..++++.++|.+++....+.|..- + .-.|..+ +.+|.++|++.+|++-+..+.+
T Consensus 447 KYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 447 KYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 55678899999999999998876421 1 1223333 5667888888888876666544
No 56
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=4.2e-14 Score=141.17 Aligned_cols=261 Identities=15% Similarity=0.177 Sum_probs=101.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 003451 495 LISAYSRCGSFDQAMSIYKRMLEAG-VTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGR 573 (819)
Q Consensus 495 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 573 (819)
+...+...|++++|+++++...... ...+...|..+.......++++.|+..++++...+. -+...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-cccc
Confidence 3555666666666666664443332 122344444455555566666777777766665432 233444444444 5666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003451 574 EIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKG-FSPDIPTLNAMISIYGRRQMVAKTNEIL 652 (819)
Q Consensus 574 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 652 (819)
++++|..++++..+.. ++...+...+..+...++++++..++..+.... ...+...|..++..+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6777776666655432 344555566666777777777777777765422 2346677778888888888888888888
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003451 653 HFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP 732 (819)
Q Consensus 653 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 732 (819)
++..+.. +.|....+.++..+...|+.+++.++++...+.. ..|...+..++.+|...|+.++|..++++..+.. ..
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 8888763 3356777888888888888888888888777652 3456677888888888899999999998888742 23
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 733 DVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 733 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
|+.+...++.++...|+.++|..+.+++.+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 677778888888899999999888887754
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=5.8e-11 Score=109.97 Aligned_cols=287 Identities=14% Similarity=0.130 Sum_probs=140.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 003451 468 GMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA-GVTP--DLSTYNAVLAALARGGMWEQSE 544 (819)
Q Consensus 468 g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~A~ 544 (819)
.+.++|.++|-+|.+.... +..+-.+|.+.|.+.|..|.|+.+.+.+.+. +.+- .......|..-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4455555555555553111 2233344555555555555555555555543 1110 0122233344455555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 003451 545 KIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKG 624 (819)
Q Consensus 545 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 624 (819)
.+|..+.+.+ +-.......++..|-+..+|++|++.-.++.+.+
T Consensus 128 ~~f~~L~de~------------------------------------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~ 171 (389)
T COG2956 128 DIFNQLVDEG------------------------------------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLG 171 (389)
T ss_pred HHHHHHhcch------------------------------------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC
Confidence 5555555432 2223333444444444444555554444444433
Q ss_pred CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 003451 625 FSPD----IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDII 700 (819)
Q Consensus 625 ~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 700 (819)
..+. ...|..+...+....+.+.|...+.+..+.. +.....-..+.+.+...|+++.|.+.|+.+.+.+..--..
T Consensus 172 ~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~e 250 (389)
T COG2956 172 GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSE 250 (389)
T ss_pred CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHH
Confidence 2222 1223444444455556666666666666543 2223333445566666777777777777766653322245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003451 701 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYC 780 (819)
Q Consensus 701 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 780 (819)
+...|..+|.+.|+.++...++.++.+... ....-..+........-.+.|..++.+-+. -+|+...+..+++.-.
T Consensus 251 vl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 251 VLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhh
Confidence 556666677777777777777777666422 222333333333333334555555444443 2566666666655433
Q ss_pred ---hcCCHhHHHHHHHHhh
Q 003451 781 ---KLNQRYEAITFVNNLS 796 (819)
Q Consensus 781 ---~~g~~~~A~~~~~~~~ 796 (819)
..|+..+-...++++.
T Consensus 327 ~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 327 ADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred ccccccchhhhHHHHHHHH
Confidence 2233444444444443
No 58
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.54 E-value=6e-08 Score=98.97 Aligned_cols=600 Identities=14% Similarity=0.108 Sum_probs=356.6
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHH
Q 003451 185 KEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIM 264 (819)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~ 264 (819)
..+++.....+.+.+.+. ++-...+.....-.+...|+-++|....+.-....+. +.++|.++.-.+.... ++++|+
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK-~Y~eai 95 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDK-KYDEAI 95 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhh-hHHHHH
Confidence 455666666777766663 3334455555555667788889998888877765443 6777887766665555 899999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 003451 265 ALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKING 344 (819)
Q Consensus 265 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 344 (819)
+.|......+.. |..++.-+.-.-++.|+++..........+.. +.....|..++.++.-.|++..|..++++..+.-
T Consensus 96 Kcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 96 KCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999998887633 67777777766777788888888877777762 3355678888888888999999999998887763
Q ss_pred -CCCCHhhHHHHH------HHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003451 345 -CLPSIVTYNSLI------SAYARDGLLEEAMELKTQMVEIGITPDVFT-YTTLLSGFEKAGKDESAMKVFEEMRSAGCK 416 (819)
Q Consensus 345 -~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 416 (819)
-.|+...+.... ....+.|.+++|++.+..-... + .|... -..-...+.+.+++++|..++..++.+ .
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--n 249 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--N 249 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--C
Confidence 235555554433 3345678888888877665443 1 13332 234456677889999999999999887 4
Q ss_pred CCHHHHHHHH-HHHHccCCHHHHH-HHHHHHhhCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 003451 417 PNICTFNALI-KMHGNRGNFVEMM-KVFDEINKCNCKPDIVTWNTL-LAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFN 493 (819)
Q Consensus 417 ~~~~~~~~l~-~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 493 (819)
||..-|...+ .++.+-.+.-++. .+|....+. .|....-..+ +.......-.+..-+++..+.+.|+++- +.
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~ 324 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FK 324 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hh
Confidence 5655555444 4443333333444 555555443 1111111111 1111112223344556667777776643 33
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH----CC----------CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 003451 494 TLISAYSRCGSFDQAMSIYKRMLE----AG----------VTPDLSTY--NAVLAALARGGMWEQSEKIFAEMKGGRCKP 557 (819)
Q Consensus 494 ~l~~~~~~~g~~~~A~~~~~~~~~----~~----------~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 557 (819)
.+...|-.....+-..++...+.. .| -.|....| -.++..+-..|+++.|...++...++ .|
T Consensus 325 dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TP 402 (700)
T KOG1156|consen 325 DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TP 402 (700)
T ss_pred hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--Cc
Confidence 333333322222211111111111 11 13444444 44567788899999999999999876 55
Q ss_pred CHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC--CCHH----
Q 003451 558 NEL-TYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFS--PDIP---- 630 (819)
Q Consensus 558 ~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~---- 630 (819)
+.. .|..-.+.+...|++++|...+++..+.+ .+|..+-..-+....+.++.++|.++.....+.|.. .+..
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqc 481 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQC 481 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhh
Confidence 543 44455577888999999999999988764 455555546677778889999999999888876641 0111
Q ss_pred HH--HHHHHHHHhcCChHHHHHHHHHHhhC-----CCCCCHHHH----------HHHHHHHHhcC-------CHHHHHHH
Q 003451 631 TL--NAMISIYGRRQMVAKTNEILHFMNDS-----GFTPSLTTY----------NTLMYMYSRSE-------NFARAEDV 686 (819)
Q Consensus 631 ~~--~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~p~~~~~----------~~l~~~~~~~g-------~~~~A~~~ 686 (819)
.| ..-..+|.+.|.+..|++-|..+.+. .-+-|..|| -.|+...-... -...|+++
T Consensus 482 mWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~i 561 (700)
T KOG1156|consen 482 MWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAIEI 561 (700)
T ss_pred HHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 12 12234667778888887755554432 112344443 22222111111 12345666
Q ss_pred HHHHHHCC-C-CCCHhHHHHHH----HHHHhc-CCHHHHHHHHHHHHH---------CCC--CCCHHHHHHHHHHHHhcC
Q 003451 687 LREILAKG-I-KPDIISYNTVI----FAYCRN-GRMKEASRIFSEMRD---------SGL--VPDVITYNTFVASYAADS 748 (819)
Q Consensus 687 ~~~~~~~~-~-~p~~~~~~~l~----~~~~~~-g~~~~A~~~~~~~~~---------~g~--~p~~~~~~~l~~~~~~~g 748 (819)
+-.|.+.. . .+.......+- ....++ .+-.+|.+--+.+.+ .|. .+|.. .++..+.+..
T Consensus 562 Yl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~ 638 (700)
T KOG1156|consen 562 YLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLKTE 638 (700)
T ss_pred HHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhhcC
Confidence 66665431 0 00011111111 111111 111222222222211 122 23333 4566666665
Q ss_pred C-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 749 L-FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 749 ~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
+ .++|.+.+..+...+ +-+..+|..-...|.+.|.+.-|...++++....+..+..
T Consensus 639 ~Pl~ea~kf~~~l~~~~-~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~~~~~~~~l 695 (700)
T KOG1156|consen 639 DPLEEARKFLPNLQHKG-KEKGETYILSFELYYRKGKFLLALACLNNAEGIHGTHPSL 695 (700)
T ss_pred ChHHHHHHHHHHHHHhc-ccchhhhhhhHHHHHHHHHHHHHHHHHHhhhhhcCCCCcc
Confidence 5 678999988888753 4577888888888999999999999999998887776543
No 59
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=3.7e-12 Score=129.61 Aligned_cols=262 Identities=11% Similarity=0.065 Sum_probs=169.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHH
Q 003451 491 TFNTLISAYSRCGSFDQAMSIYKRMLEAGV--TPDLSTYNAVLAALARGGMWEQSEKIF-AEMKGGRCKPNELTYSSLLH 567 (819)
Q Consensus 491 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~l~~ 567 (819)
....+..+|...+++++|.++|+.+.+... .-+.+.|...+-.+.+. -++..+ +++.+.. +..+.+|-.+.+
T Consensus 355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~Laq~Li~~~-~~sPesWca~GN 429 (638)
T KOG1126|consen 355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLAQDLIDTD-PNSPESWCALGN 429 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHHHHHHhhC-CCCcHHHHHhcc
Confidence 334455555555555555555555554321 11445555444332221 111111 2222221 334556666666
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 003451 568 AYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAK 647 (819)
Q Consensus 568 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 647 (819)
+|.-+++.+.|++.|+..+..+ +....+|..++.-+.....++.|...|+..+..... +-.+|..+...|.+.++++.
T Consensus 430 cfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~ 507 (638)
T KOG1126|consen 430 CFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQEKLEF 507 (638)
T ss_pred hhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhheeccchhhH
Confidence 6666666666666666665532 224555555555566666677777777766643111 22345566777888889999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003451 648 TNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 648 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 727 (819)
|.-.|+++.+.+ +-+.+....++..+.+.|+.++|+.+++++...+.+ |+..-...+..+...+++++|+..++++.+
T Consensus 508 Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 508 AEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 999998888764 445667778888888999999999999999876543 555555667778888999999999999988
Q ss_pred CCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003451 728 SGLVPDVI-TYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 728 ~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
+.|+.. ++..++..|-+.|+.+.|+..+--|.+.
T Consensus 586 --~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 586 --LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred --hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 677664 6778888899999999999998888874
No 60
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=1.7e-10 Score=107.85 Aligned_cols=452 Identities=15% Similarity=0.107 Sum_probs=266.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003451 322 DVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDE 401 (819)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~ 401 (819)
.-+....++..|+.+++--...+-.-...+---+..++...|++++|+..+..+.+.. .++...+..|.-++.-.|.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 3445566777777777655433222111222234456677888888888888777643 445555666666666678888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003451 402 SAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMK 481 (819)
Q Consensus 402 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 481 (819)
+|..+-.+..+ +......|....-+.|+-++-..+-+.+... ...--.|.......-.+++|+++++...
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777655432 3344444555555677766666555554321 1222233344444456788888888877
Q ss_pred HCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003451 482 RAGFIPERDTFNTL-ISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNEL 560 (819)
Q Consensus 482 ~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 560 (819)
..+ |+....+.- .-+|.+..-++.+.++++-..+. +.-+....|..+....+.=.-..|..-..++.+.+-..
T Consensus 179 ~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--- 252 (557)
T KOG3785|consen 179 QDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--- 252 (557)
T ss_pred hcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc---
Confidence 652 333334433 33556666677777777766654 22234444444433333222223333334443322111
Q ss_pred HHHHHHHHHHc-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003451 561 TYSSLLHAYAN-----GREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAM 635 (819)
Q Consensus 561 ~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 635 (819)
|- .+.-+++ -..-+.|+.++--+.+.. +..-..++-.|.+.+++++|..+.+++... .|.......+
T Consensus 253 -~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~I----PEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgv 324 (557)
T KOG3785|consen 253 -YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKHI----PEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGV 324 (557)
T ss_pred -ch-hHHHHHHcCeEEEeCCccHHHhchHHHhhC----hHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHH
Confidence 11 1111222 234456666665555432 222344566788999999999988776432 2222222222
Q ss_pred H-----HHHHhcCChHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 003451 636 I-----SIYGRRQMVAKTNEILHFMNDSGFTPSLT-TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAY 709 (819)
Q Consensus 636 ~-----~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 709 (819)
. .-.....+..-|.+.|+..-+.+..-|.. --.++..++.-..++++.+-+++.+... +..|......++.++
T Consensus 325 v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk 403 (557)
T KOG3785|consen 325 VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAK 403 (557)
T ss_pred HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHH
Confidence 2 22223334556666666555554333322 2345566666777899999999998876 333433344578999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHHhcCCHhH
Q 003451 710 CRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-N-QNTYNSIVDGYCKLNQRYE 787 (819)
Q Consensus 710 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~ 787 (819)
+..|++.+|.++|-++....+..+..-...++.+|.+.++.+-|.+++-++- .| + ......+++-|++.|.+.-
T Consensus 404 ~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~----t~~e~fsLLqlIAn~CYk~~eFyy 479 (557)
T KOG3785|consen 404 LATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN----TPSERFSLLQLIANDCYKANEFYY 479 (557)
T ss_pred HHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC----CchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887654445333344578888999999999987766553 23 2 3455677889999999999
Q ss_pred HHHHHHHhhhcCCCCC
Q 003451 788 AITFVNNLSKLDPHVT 803 (819)
Q Consensus 788 A~~~~~~~~~~~p~~~ 803 (819)
|.+.|+.+..++|.+.
T Consensus 480 aaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 480 AAKAFDELEILDPTPE 495 (557)
T ss_pred HHHhhhHHHccCCCcc
Confidence 9999999999988753
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=4.8e-11 Score=110.45 Aligned_cols=293 Identities=12% Similarity=0.065 Sum_probs=201.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHH
Q 003451 432 RGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPE---RDTFNTLISAYSRCGSFDQA 508 (819)
Q Consensus 432 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 508 (819)
.++.++|.++|-+|.+.. +-+..+--+|.+.|-+.|..+.|+.+-+.+.+..-.+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467899999999999753 34456667788999999999999999999987622211 23456678889999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 003451 509 MSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSG 588 (819)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 588 (819)
+++|..+.+.+.- -......|+..|-...+|++|+++-+++.+.+-.+. +.-|.
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~----~~eIA--------------------- 180 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY----RVEIA--------------------- 180 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc----hhHHH---------------------
Confidence 9999999885432 456777888999999999999999988887643322 21111
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 003451 589 IIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYN 668 (819)
Q Consensus 589 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 668 (819)
.+|..+...+....+++.|...+.+..+.+. ..+.+--.+.+.....|+++.|.+.++.+.+.+..--..+..
T Consensus 181 ------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 181 ------QFYCELAQQALASSDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred ------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 1223334444445556666666666655431 134444556667777888888888888888764333345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--
Q 003451 669 TLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA-- 746 (819)
Q Consensus 669 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~-- 746 (819)
.|..+|...|+.++...++.++.+.. +....-..+...-....-.+.|...+.+-+. -.|+...+..++.....
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~da 329 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADA 329 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccc
Confidence 78888888888888888888888753 3333444444444444455666666665555 37888888887776543
Q ss_pred -cCChHHHHHHHHHHHH
Q 003451 747 -DSLFVEALDVVRYMIK 762 (819)
Q Consensus 747 -~g~~~~A~~~~~~~~~ 762 (819)
.|...+-+..++.|+.
T Consensus 330 eeg~~k~sL~~lr~mvg 346 (389)
T COG2956 330 EEGRAKESLDLLRDMVG 346 (389)
T ss_pred cccchhhhHHHHHHHHH
Confidence 3456777777787774
No 62
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=4.9e-08 Score=103.85 Aligned_cols=214 Identities=13% Similarity=0.132 Sum_probs=108.0
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--CCHHHHHH---------------------------HHHHHhcC
Q 003451 557 PNELTYSSLLHAYANGREIDQMLALSEEIYSGIIE--PHAVLLKT---------------------------LILVYSKS 607 (819)
Q Consensus 557 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~---------------------------l~~~~~~~ 607 (819)
.|+...+.-+.++...+-..+-++++++++-.... .+...-+. ++......
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~ 1061 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIEN 1061 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhh
Confidence 34455556667777778888888888887643321 11111111 12223333
Q ss_pred CCHHHHHHHHHHHHHcC---------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH
Q 003451 608 DLLMDTERAFLELKKKG---------------------FSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTT 666 (819)
Q Consensus 608 ~~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 666 (819)
+-+++|..+|++.-..+ --..+..|..++.+..+.|.+.+|++-|-+ ..|+..
T Consensus 1062 ~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~ 1135 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSN 1135 (1666)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHH
Confidence 44566666666541100 001233455555555555555555554433 134455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003451 667 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA 746 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 746 (819)
|..+++...+.|.+++-.+++..+.+..-.|.+. ..|+.+|++.++..+-.+++ .-|+.......+.-|..
T Consensus 1136 y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1136 YLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFE 1206 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhh
Confidence 6666666666666666666666555543333322 35556666666655544433 23444444555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 003451 747 DSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNN 794 (819)
Q Consensus 747 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 794 (819)
.|.++.|.-+|.... .|..|+..+...|+++.|....++
T Consensus 1207 ~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred hhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhh
Confidence 555555544433322 244444445555555555444433
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.2e-09 Score=102.88 Aligned_cols=294 Identities=11% Similarity=0.047 Sum_probs=206.7
Q ss_pred cCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCCHHHHH
Q 003451 502 CGSFDQAMSIYKRMLEA-GVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNEL-TYSSLLHAYANGREIDQML 579 (819)
Q Consensus 502 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~ 579 (819)
.++...|...+--+... .+.-+......+.+.+...|+.++|+..|++.... .|+.. ..-...-.+...|+.+...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHH
Confidence 34444444444333332 34456677777888888888888888888877653 23322 1222222344567777776
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 003451 580 ALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSG 659 (819)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 659 (819)
.+...+.... .....-+..-+.......++..|..+-.+.++... -+...+-.-...+...+++++|.-.|+..+...
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 6666665532 12222222233444556777888888777776532 245556555667788899999999999888753
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCCCCHH-H
Q 003451 660 FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVI-FAYCR-NGRMKEASRIFSEMRDSGLVPDVI-T 736 (819)
Q Consensus 660 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~g~~p~~~-~ 736 (819)
+-+..+|..++..|...|.+.+|.-.-+...+. +..+..+...+. ..|.- ...-++|.+++++.++ +.|+.. .
T Consensus 365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~A 440 (564)
T KOG1174|consen 365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPA 440 (564)
T ss_pred -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHH
Confidence 457789999999999999999999888877764 444666666653 33332 2235889999998877 577654 6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 737 YNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 737 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
.+.++..+...|.+++++.++++.+. ..||....+.|++.+...+.+++|.+.|..++.++|.+...
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 77888889999999999999999988 68999999999999999999999999999999999998443
No 64
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=1.9e-10 Score=110.21 Aligned_cols=287 Identities=14% Similarity=0.129 Sum_probs=182.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 003451 502 CGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLAL 581 (819)
Q Consensus 502 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 581 (819)
.|++.+|+++..+..+.+.. ....|..-+.+--+.|+.+.+-.++.+..+..-.++..............|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 35555555555554444333 23333333444445555555555555555432233333444444445555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 003451 582 SEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDI-------PTLNAMISIYGRRQMVAKTNEILHF 654 (819)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~ 654 (819)
..++.+.+ +.+........++|.+.|++.....++..+.+.|.-.+. .++..++.-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 55555543 444555555556666666666666666666665544333 2455555554445555554556655
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003451 655 MNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV 734 (819)
Q Consensus 655 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 734 (819)
.-.. ...++..-.+++.-+.+.|+.++|.++.++..+.+..|. ... ...+.+-++.+.-++..++..+. ..-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 5443 345666777788888899999999999999988876665 112 22355667777777777776664 22245
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 003451 735 ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 735 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
..+.+++..|.+.+.|.+|.+.++.+++ ..|+...|..+++.+-+.|+.++|....++.+-.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6788899999999999999999998887 5789999999999999999999999998887643
No 65
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=2.8e-10 Score=109.08 Aligned_cols=285 Identities=13% Similarity=0.159 Sum_probs=174.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 003451 362 DGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKV 441 (819)
Q Consensus 362 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 441 (819)
.|++..|+++..+-.+.+-.| ...|..-+++.-..|+.+.+...+.++.+..-.++...+-+........|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666655554332 2344444555556666666666666666553344555555666666666666666666
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 003451 442 FDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPER-------DTFNTLISAYSRCGSFDQAMSIYKR 514 (819)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 514 (819)
++++.+.+ +..........++|.+.|++.+...++..|.+.|.--+. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 66665544 445566666666666677777766666666666654333 3566666666666666665566666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 003451 515 MLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHA 594 (819)
Q Consensus 515 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 594 (819)
.... .+-++..-.+++.-+.++|+.++|.++.++..+++..++. ...-.+.+-++.+.-++..++..+.. +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 5543 2335667777888888899999999988888877655541 11223455666666666666665542 4444
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 003451 595 VLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMN 656 (819)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 656 (819)
..+.+++..|.+.+.+.+|...|+...+. .|+..+|+.+.+.+.+.|+.++|.+..++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 56666666666666666666666655554 4556666666666666666666666555544
No 66
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=2.8e-08 Score=103.45 Aligned_cols=559 Identities=14% Similarity=0.198 Sum_probs=289.6
Q ss_pred CCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--------CCCCHHHHHHHHHH
Q 003451 146 HKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDG--------FDIDVYAYTSLITT 217 (819)
Q Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~ 217 (819)
.|+.+.|.+-.+.++. ..+|..+.+.|.+.++++.|.--+..|.... ...+...-..+.-.
T Consensus 741 iG~MD~AfksI~~IkS-----------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvL 809 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIKS-----------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVL 809 (1416)
T ss_pred eccHHHHHHHHHHHhh-----------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHH
Confidence 3666666665555432 3577778888888777777665554432110 00011111222222
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 003451 218 YASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEE 297 (819)
Q Consensus 218 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 297 (819)
-...|..++|..+|++-++ |..|=..|...| .|++|.++-+.--+.. -..||.....-+-..++.+.
T Consensus 810 AieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g-~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR---------YDLLNKLYQSQG-MWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcc-cHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHH
Confidence 3467788888888887765 334444556667 7888877766433222 23466666666666777888
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003451 298 AAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVE 377 (819)
Q Consensus 298 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 377 (819)
|++.|++.... --.++..|. .++.......+.+ .|...|.-....+-..|+.+.|+.+|...++
T Consensus 877 AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 877 ALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 88777653221 111111111 1222222333333 2334455555555667888888888887654
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHH
Q 003451 378 IGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTW 457 (819)
Q Consensus 378 ~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 457 (819)
|.++++..|-.|+.++|-++-++- -|......+.+.|-..|++.+|...|.+... +
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------f 996 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------F 996 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------H
Confidence 566777778888888888776542 2556666778888888888888888877542 3
Q ss_pred HHHHHHHHhcCChHH---------------HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH--------
Q 003451 458 NTLLAVFGQNGMDSE---------------VSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKR-------- 514 (819)
Q Consensus 458 ~~l~~~~~~~g~~~~---------------a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------- 514 (819)
...|+.+-.++.-++ |-..|++ .|. -+...+..|-+.|.+.+|+++--+
T Consensus 997 snAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe---~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~ 1068 (1416)
T KOG3617|consen 997 SNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEE---LGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALD 1068 (1416)
T ss_pred HHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH---cch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHH
Confidence 333443333332222 2222222 111 112233345556666555544221
Q ss_pred HHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-CCCC
Q 003451 515 MLEA--GVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYS-GIIE 591 (819)
Q Consensus 515 ~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~ 591 (819)
++.. ....|+...+...+.++...++++|..++-..+. |...+.. |+..++.-..++.+.|.- +.-.
T Consensus 1069 lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alql-C~~~nv~vtee~aE~mTp~Kd~~ 1138 (1416)
T KOG3617|consen 1069 LIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQL-CKNRNVRVTEEFAELMTPTKDDM 1138 (1416)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHH-HhcCCCchhHHHHHhcCcCcCCC
Confidence 1111 2334566666667777777777777777655543 2222222 233333323333333321 1112
Q ss_pred CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH----------------HHH
Q 003451 592 PH----AVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKT----------------NEI 651 (819)
Q Consensus 592 ~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A----------------~~~ 651 (819)
++ ..++..++..|.+.|.+..|-+-|.+.-+. . .-+.++.+.|+.++- ...
T Consensus 1139 ~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK-----l----~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANy 1209 (1416)
T KOG3617|consen 1139 PNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK-----L----SAMRALLKSGDTQKIRFFANTSRQKEIYIMAANY 1209 (1416)
T ss_pred ccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH-----H----HHHHHHHhcCCcceEEEEeeccccceeeeehhhh
Confidence 22 345666777788888887777666554321 1 112333344443321 111
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003451 652 LHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV 731 (819)
Q Consensus 652 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 731 (819)
++ ......++.+...++.-|-+..-++.--.+|....+- ...-|..+-. ..|-+++|.+.+.++...+.
T Consensus 1210 LQ---tlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydK---a~gAl~eA~kCl~ka~~k~~- 1278 (1416)
T KOG3617|consen 1210 LQ---TLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI----EIEELQTYDK---AMGALEEAAKCLLKAEQKNM- 1278 (1416)
T ss_pred hh---hcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhH---HhHHHHHHHHHHHHHHhhcc-
Confidence 11 1122334444444444444433333333333322211 1111111111 12334555555555543221
Q ss_pred CCHHHHHH----------HHHHHH-hcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 003451 732 PDVITYNT----------FVASYA-ADSLFVEALDVVRYMIKQGCKPN----QNTYNSIVDGYCKLNQRYEAITFVNNLS 796 (819)
Q Consensus 732 p~~~~~~~----------l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 796 (819)
....++. .+.... -..+..+.++-++.|.+...-|| ..+|..|+..+....++..|-+.++++.
T Consensus 1279 -~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~ 1357 (1416)
T KOG3617|consen 1279 -STTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQ 1357 (1416)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHh
Confidence 1112222 222211 12255566666777776544333 4678888999999999999999999999
Q ss_pred hcCCCCCHHHH
Q 003451 797 KLDPHVTKELE 807 (819)
Q Consensus 797 ~~~p~~~~~~~ 807 (819)
.+.|.-+..+|
T Consensus 1358 ~k~p~~~~s~~ 1368 (1416)
T KOG3617|consen 1358 KKVPNVDLSTF 1368 (1416)
T ss_pred hcCCccchhcc
Confidence 99998765543
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.45 E-value=3e-08 Score=103.24 Aligned_cols=436 Identities=11% Similarity=0.041 Sum_probs=280.6
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003451 304 EMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPD 383 (819)
Q Consensus 304 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 383 (819)
++....+..|...|..|.-+...+|+++.+-+.|++.... .......|+.+...|.-.|.-..|..++++-......|+
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps 391 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPS 391 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCC
Confidence 3333345668888999988999999999999999987654 444677899999999999999999999888766543354
Q ss_pred HH-HHHHHHHHHH-hcCCHHHHHHHHHHHHHC--CCC--CCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHh
Q 003451 384 VF-TYTTLLSGFE-KAGKDESAMKVFEEMRSA--GCK--PNICTFNALIKMHGNR-----------GNFVEMMKVFDEIN 446 (819)
Q Consensus 384 ~~-~~~~l~~~~~-~~g~~~~A~~~~~~~~~~--~~~--~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~ 446 (819)
.. .+...-..|. +.|..++++..-.++... +.. .....|..+.-+|... ....++++.+++..
T Consensus 392 ~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av 471 (799)
T KOG4162|consen 392 DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV 471 (799)
T ss_pred cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH
Confidence 44 3333333343 457778877777776652 111 1233444444444321 12456778888887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHH
Q 003451 447 KCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA-GVTPDLS 525 (819)
Q Consensus 447 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ 525 (819)
+.+ +.|......+.--|...++.+.|....++..+.+-..+...|..|.-.+...+++.+|+.+.+...+. |. |..
T Consensus 472 ~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~ 548 (799)
T KOG4162|consen 472 QFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHV 548 (799)
T ss_pred hcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhh
Confidence 765 34445555566667888999999999999999876778899999999999999999999999987764 21 111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 003451 526 TYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSG--IIEPHAVLLKTLILV 603 (819)
Q Consensus 526 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~ 603 (819)
....-++.-..-++.+++......+... --+..... ..++-....+....+.-. .......++..+...
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q-------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQ-------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHh-------hhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 1112223333467777877777666531 00000000 000101111111111000 000011111111111
Q ss_pred HhcCC---CHHHHHHHHHHHHHcCC--CCC------HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003451 604 YSKSD---LLMDTERAFLELKKKGF--SPD------IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMY 672 (819)
Q Consensus 604 ~~~~~---~~~~a~~~~~~~~~~~~--~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 672 (819)
....+ ..+.. +..... .|+ ...|......+.+.++.++|...+.+..... +-....|...+.
T Consensus 620 ~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~ 692 (799)
T KOG4162|consen 620 VASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGL 692 (799)
T ss_pred HHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhH
Confidence 11000 00000 111111 122 2345566677788888999988887777642 456667888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003451 673 MYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASR--IFSEMRDSGLVPDVITYNTFVASYAADSL 749 (819)
Q Consensus 673 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 749 (819)
.+...|+.++|.+.|...... .|+ +....+++.++.+.|+..-|.+ ++..+.+.+.. +...|..++..+-+.|+
T Consensus 693 ~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 693 LLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGD 769 (799)
T ss_pred HHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccc
Confidence 889999999999999998875 454 7888999999999999777777 99999985432 67799999999999999
Q ss_pred hHHHHHHHHHHHH
Q 003451 750 FVEALDVVRYMIK 762 (819)
Q Consensus 750 ~~~A~~~~~~~~~ 762 (819)
.++|.+.|..+.+
T Consensus 770 ~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 770 SKQAAECFQAALQ 782 (799)
T ss_pred hHHHHHHHHHHHh
Confidence 9999999999987
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=5.4e-11 Score=110.03 Aligned_cols=240 Identities=11% Similarity=0.024 Sum_probs=169.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003451 563 SSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRR 642 (819)
Q Consensus 563 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 642 (819)
+.+..+|.+.|-+.+|.+.++..++. .+...++..+..+|.+.++...|..++.+.++.- +-|+.....+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 44555666666666666666665554 3445555556666666666666666666666542 22444455666777777
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 003451 643 QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIF 722 (819)
Q Consensus 643 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 722 (819)
++.++|.++++...+.. +.+.....++...|.-.++.+-|+.+++++++.|.. +...|+.+.-+|...+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 77888888888877653 455666667777777888888888888888888765 7778888888888888888888888
Q ss_pred HHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 003451 723 SEMRDSGLVPDV--ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 723 ~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 800 (819)
++....--.|+. .+|.+++......|++.-|.+.++-++..+ .-+...++.|+-.-.+.|+.++|+.+++.+....|
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 887764333333 477788888888888888888888877642 22567788888878888888888888888888888
Q ss_pred CCCHHHHH
Q 003451 801 HVTKELEC 808 (819)
Q Consensus 801 ~~~~~~~~ 808 (819)
.--+++++
T Consensus 461 ~m~E~~~N 468 (478)
T KOG1129|consen 461 DMAEVTTN 468 (478)
T ss_pred cccccccc
Confidence 77666654
No 69
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.7e-07 Score=99.83 Aligned_cols=576 Identities=14% Similarity=0.179 Sum_probs=302.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003451 174 SVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTS-----LITTYASNGRYREAVMVFKKMEEEGCKPTLITYNV 248 (819)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 248 (819)
.....+...|.+.|-...|++.+.++.... ...+.+. -+..|.-.-.++++.+.+..|...++..+..+.-.
T Consensus 607 yDra~IAqLCEKAGL~qraLehytDl~DIK---R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQ 683 (1666)
T KOG0985|consen 607 YDRAEIAQLCEKAGLLQRALEHYTDLYDIK---RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQ 683 (1666)
T ss_pred ccHHHHHHHHHhcchHHHHHHhcccHHHHH---HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 346778888999999888887776553210 0111111 12234444557888899999988887777777777
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH------------
Q 003451 249 ILNVYGKMGMPWNKIMALVEGMKSA-----------GVKPDSYTFNTLISCCRRGSLHEEAAGVFEEM------------ 305 (819)
Q Consensus 249 ll~~~~~~g~~~~~a~~~~~~~~~~-----------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~------------ 305 (819)
+..-|+..- ..+...++|+..+.. ++..|....--.|.+.|+.|++.+.+++-++-
T Consensus 684 vatky~eql-g~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfL 762 (1666)
T KOG0985|consen 684 VATKYHEQL-GAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFL 762 (1666)
T ss_pred HHHHHHHHh-CHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHH
Confidence 777776654 367778888876653 34556666677788899999999888876542
Q ss_pred HHC---------------CCCCCHHhH------HHHHHHHHhCCChHHHHHHHHHHHHCCCCC-----------CHhhHH
Q 003451 306 KLA---------------GFSPDKVTY------NALLDVYGKCRRPKEAMQVLREMKINGCLP-----------SIVTYN 353 (819)
Q Consensus 306 ~~~---------------~~~~~~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~-----------~~~~~~ 353 (819)
++. ++.+|.+.| ...|..|...=+....-.+.-.+....+.- ....-.
T Consensus 763 keAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~d 842 (1666)
T KOG0985|consen 763 KEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVD 842 (1666)
T ss_pred HhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChH
Confidence 111 222232222 112333433322222222222222211110 001112
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH-HH---HHH-----H-HHH-----------
Q 003451 354 SLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESA-MK---VFE-----E-MRS----------- 412 (819)
Q Consensus 354 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A-~~---~~~-----~-~~~----------- 412 (819)
-|+.-.-+.++..--+..++.....|.. |..++++|...|...++-.+- ++ .++ + ..+
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 2333344556666667777777788876 888899888887765433221 10 011 0 011
Q ss_pred CC--------CCCCHHHHHHHHHHHHccCCHHHHHHHH-----------HHHhhCCC--CCCHHHHHHHHHHHHhcCChH
Q 003451 413 AG--------CKPNICTFNALIKMHGNRGNFVEMMKVF-----------DEINKCNC--KPDIVTWNTLLAVFGQNGMDS 471 (819)
Q Consensus 413 ~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~-----------~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 471 (819)
+| +......|....+.+.+..+.+-=.+++ +.+.+.++ ..|+.....-+.++...+-..
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 11 1111233444445555555543322222 23332222 245666677788888888888
Q ss_pred HHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003451 472 EVSGVFKEMKRAGF--IPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAE 549 (819)
Q Consensus 472 ~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 549 (819)
+-+++++++.-.+. ..+...-+.|+-...+ -+...++++.+++-..+.. + +......++-+++|..+|+.
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~-~------ia~iai~~~LyEEAF~ifkk 1073 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAP-D------IAEIAIENQLYEEAFAIFKK 1073 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCch-h------HHHHHhhhhHHHHHHHHHHH
Confidence 88888888764321 2222333444433333 3455666666665543211 1 22334455566777777765
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCH
Q 003451 550 MKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDI 629 (819)
Q Consensus 550 m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 629 (819)
.- .+......|+.- .+..+.|.+..+.. ..+..|..++.+-.+.|.+.+|.+-|-+. .|+
T Consensus 1074 f~-----~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika------dDp 1133 (1666)
T KOG0985|consen 1074 FD-----MNVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDP 1133 (1666)
T ss_pred hc-----ccHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCc
Confidence 42 233333333332 23444444444332 22345556666666666666665555432 245
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 003451 630 PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAY 709 (819)
Q Consensus 630 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 709 (819)
..|...++...+.|.+++-...+....+....|... ..++.+|++.++..+-++++ ..||......+.+-|
T Consensus 1134 s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrc 1204 (1666)
T KOG0985|consen 1134 SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRC 1204 (1666)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHH
Confidence 556666666666666666666665555544333332 34555666666555543332 124444444555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH------------------------HcCC
Q 003451 710 CRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMI------------------------KQGC 765 (819)
Q Consensus 710 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------------------~~~~ 765 (819)
...|.++.|.-+|... ..|..++..+...|++..|++..+++- -.++
T Consensus 1205 f~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~i 1275 (1666)
T KOG0985|consen 1205 FEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNI 1275 (1666)
T ss_pred hhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceE
Confidence 5555555554444322 133444444444444444443333321 1112
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 003451 766 KPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 766 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 800 (819)
.....-..-++..|-..|-++|-+.+++..+.+..
T Consensus 1276 ivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLER 1310 (1666)
T KOG0985|consen 1276 IVHADELEELIEYYQDRGYFEELISLLEAGLGLER 1310 (1666)
T ss_pred EEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhH
Confidence 22345566677777788888888888887766543
No 70
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2.1e-08 Score=101.11 Aligned_cols=148 Identities=15% Similarity=0.087 Sum_probs=96.5
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHhHHHHHHHHHHhcCCH
Q 003451 644 MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLR--------EILAKGIKPDIISYNTVIFAYCRNGRM 715 (819)
Q Consensus 644 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~ 715 (819)
.+.++.+++....+..-.-...+.-..+......|+++.|++++. .+.+.+..|. +...+...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCC
Confidence 467777777777664312223455666777788899999999888 5555444444 444555667777776
Q ss_pred HHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 003451 716 KEASRIFSEMRDS--GLVPDV----ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAI 789 (819)
Q Consensus 716 ~~A~~~~~~~~~~--g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 789 (819)
+-|..++.+.+.. .-.+.. ..+..++..-.+.|+-++|..+++++.+.. .+|..+...++-+|++. +.+.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHH
Confidence 6677776666542 111111 244455555567799999999999998842 45777888888888776 667777
Q ss_pred HHHHHh
Q 003451 790 TFVNNL 795 (819)
Q Consensus 790 ~~~~~~ 795 (819)
.+-+++
T Consensus 512 ~l~k~L 517 (652)
T KOG2376|consen 512 SLSKKL 517 (652)
T ss_pred HHhhcC
Confidence 766554
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=6.6e-11 Score=109.46 Aligned_cols=234 Identities=12% Similarity=0.056 Sum_probs=200.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 003451 527 YNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSK 606 (819)
Q Consensus 527 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 606 (819)
-+.+.++|.+.|.+.+|.+.++..... .|-+.||..|-.+|.+..+++.|+.++.+.++.. +.+........+.+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 356788999999999999999888775 6777888889999999999999999999988863 5566666778888999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003451 607 SDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDV 686 (819)
Q Consensus 607 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 686 (819)
.++.++|.++|+...+.. +.++.....+...|.-.++++-|+..+.++++.| ..+...|+.+.-+|...++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999999874 4477888888889999999999999999999998 46888999999999999999999999
Q ss_pred HHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003451 687 LREILAKGIKPD--IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQG 764 (819)
Q Consensus 687 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 764 (819)
|++....-..|+ ..+|..+.......|++.-|.+.|+-.+.++.. ..+.+++++..-.+.|++++|..++..+..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s-- 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS-- 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh--
Confidence 999986543344 678999999899999999999999998875322 456899999999999999999999999987
Q ss_pred CCCC
Q 003451 765 CKPN 768 (819)
Q Consensus 765 ~~p~ 768 (819)
..|+
T Consensus 458 ~~P~ 461 (478)
T KOG1129|consen 458 VMPD 461 (478)
T ss_pred hCcc
Confidence 4554
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=3.8e-08 Score=99.26 Aligned_cols=182 Identities=14% Similarity=0.084 Sum_probs=101.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHH
Q 003451 538 GMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYAN-GREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERA 616 (819)
Q Consensus 538 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 616 (819)
+..+.+.++....... .|....-..+..++.. ......+..++....+........+....+......|+++.|.++
T Consensus 321 nk~~q~r~~~a~lp~~--~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGM--SPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hhHHHHHHHHHhCCcc--CchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3445555554444322 3333332333333222 224666777777766654444455666667777788888888888
Q ss_pred HH--------HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCCHHH----HHHHHHHHHhcCCHHH
Q 003451 617 FL--------ELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS--GFTPSLTT----YNTLMYMYSRSENFAR 682 (819)
Q Consensus 617 ~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~----~~~l~~~~~~~g~~~~ 682 (819)
+. .+.+.+.. +.+...+...+.+.++.+.|..++...... .-.+.... +..++..-.+.|+.++
T Consensus 399 l~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 77 44443333 334445556666666666666666655532 00111122 2223333456688888
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003451 683 AEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEM 725 (819)
Q Consensus 683 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 725 (819)
|...++++.+.. ++|..+...++.+|++. +.+.|..+-+.+
T Consensus 477 a~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 477 ASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 888888887753 45777777777777765 566666655443
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=4.7e-10 Score=109.52 Aligned_cols=203 Identities=11% Similarity=0.062 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 003451 594 AVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYM 673 (819)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 673 (819)
...+..++..+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4556667777778888888888888877653 2346677788888888999999999998888764 4456677888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 003451 674 YSRSENFARAEDVLREILAKGI-KPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVE 752 (819)
Q Consensus 674 ~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 752 (819)
+...|++++|.+.++++..... ......+..+..++...|++++|...+++..+.. ..+...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999886422 2235567778888999999999999999988753 2245678888999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 003451 753 ALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 753 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 800 (819)
|..+++++.+. ...+...+..++..+...|+.++|..+.+.+.+..|
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999999875 233667777888888899999999999888876643
No 74
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.34 E-value=3.4e-07 Score=94.35 Aligned_cols=385 Identities=16% Similarity=0.195 Sum_probs=204.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003451 223 RYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVF 302 (819)
Q Consensus 223 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 302 (819)
++.+|..+|-+-- ++ ...|..|.... .|++++.+-+. .|.+.-...-.+.+.++...|+-+.|-++-
T Consensus 546 kfk~ae~ifleqn------~t---e~aigmy~~lh-kwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk 612 (1636)
T KOG3616|consen 546 KFKEAEMIFLEQN------AT---EEAIGMYQELH-KWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELK 612 (1636)
T ss_pred hhhHHHHHHHhcc------cH---HHHHHHHHHHH-hHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhc
Confidence 4667776664321 11 12344454445 57777665432 232222223344555566666666555432
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003451 303 EEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITP 382 (819)
Q Consensus 303 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 382 (819)
.. +..+ -+.|+.|.+.|.+..|.+....=.. ...|......+..++.+..-+++|-++|+++..-
T Consensus 613 ----~s----dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~---- 677 (1636)
T KOG3616|consen 613 ----ES----DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---- 677 (1636)
T ss_pred ----cc----cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH----
Confidence 11 1111 3457788888888887765432211 2335556666666777777777777777766531
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003451 383 DVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTF-NALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLL 461 (819)
Q Consensus 383 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 461 (819)
.-.+.+|-+-..+.+|+++-+-. ++..+++. ..-...+...|+++.|...|-+... .-..+
T Consensus 678 -----dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kai 739 (1636)
T KOG3616|consen 678 -----DKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAI 739 (1636)
T ss_pred -----HHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHH
Confidence 12233333333344444443221 11111111 1222334455666666665544321 12234
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003451 462 AVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWE 541 (819)
Q Consensus 462 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 541 (819)
.+......+.+|+.+++.+++... ...-|..+.+.|+..|+++.|.++|.+.- .++-.|.+|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 455566777777777777766532 23346667777888888888887775432 2345566777888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003451 542 QSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELK 621 (819)
Q Consensus 542 ~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 621 (819)
+|.++-.+... .......|..-..-+-++|++.+|.++|-.+- .|+ ..+.+|.+.|..++.+++..+-.
T Consensus 809 da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhC
Confidence 88777666542 23334444444445666777777766654331 222 23556666677666666655432
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003451 622 KKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVL 687 (819)
Q Consensus 622 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 687 (819)
... -..+...+..-|...|++..|.+.|-+..+ |.+.+++|-.++-+++|.++-
T Consensus 878 ~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 878 GDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 211 123444555566667777777766544322 344455555555565555443
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.34 E-value=4.7e-08 Score=102.92 Aligned_cols=292 Identities=15% Similarity=0.105 Sum_probs=169.9
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc----
Q 003451 287 SCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARD---- 362 (819)
Q Consensus 287 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~---- 362 (819)
..+...|++++|++.++.-... +.............+.+.|+.++|..+++.+.+.+ +.|..-|..+..+....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 3456667777777777665443 22233444555677777778888887777777763 22444444444444222
Q ss_pred -CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003451 363 -GLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKD-ESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMK 440 (819)
Q Consensus 363 -g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 440 (819)
...+...++++++.+.- |.......+.-.+.....+ ..+...+..+...|++ .+++.+-..|......+-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 24566677777776653 2222222222112211122 2344555556666644 345555555555555444555
Q ss_pred HHHHHhhC--------------CCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003451 441 VFDEINKC--------------NCKPDIV--TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGS 504 (819)
Q Consensus 441 ~~~~~~~~--------------~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 504 (819)
++...... .-+|... ++..+...|...|++++|++..++.++.... ....|..-.+.+-+.|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCC
Confidence 55554321 0123332 3455667777788888888888877776322 35667777778888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHccCCHH
Q 003451 505 FDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNEL------TY--SSLLHAYANGREID 576 (819)
Q Consensus 505 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~--~~l~~~~~~~~~~~ 576 (819)
+.+|.+.++.....+.. |...-+..+..+.++|+.++|.+++....+.+..|-.. .| .....+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 88888888887776544 55666666777788888888888887776654322211 11 22344566677777
Q ss_pred HHHHHHHHHHh
Q 003451 577 QMLALSEEIYS 587 (819)
Q Consensus 577 ~a~~~~~~~~~ 587 (819)
.|++.+..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 77666655543
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.2e-07 Score=91.29 Aligned_cols=293 Identities=13% Similarity=0.083 Sum_probs=208.3
Q ss_pred HhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003451 465 GQNGMDSEVSGVFKEMKRA-GFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQS 543 (819)
Q Consensus 465 ~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 543 (819)
+-.++...+...+--+... -++.|.+....+...+...|+.++|...|+.....++. +........-.+.+.|+.++.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhH
Confidence 3445555555554444333 24456677888888888899999999988887765322 223333334445677888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 003451 544 EKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKK 623 (819)
Q Consensus 544 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 623 (819)
..+...+.... +-....|..-.......++++.|+.+.++.+... +.+...+..-+..+...++.++|.-.|+.....
T Consensus 286 ~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 286 SALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 88777776432 1223333333444556788888998888888765 444555555567788889999999999988765
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCC-Hh
Q 003451 624 GFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLM-YMYS-RSENFARAEDVLREILAKGIKPD-II 700 (819)
Q Consensus 624 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~p~-~~ 700 (819)
. +-+...|..|+..|...|.+.+|..+-....+. ++.+..++..+. ..+. ...--++|.+++++.+.. .|+ ..
T Consensus 364 a-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~ 439 (564)
T KOG1174|consen 364 A-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTP 439 (564)
T ss_pred c-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHH
Confidence 3 236788999999999999999998877766654 345666665553 3332 233467899999988874 565 55
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003451 701 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 768 (819)
Q Consensus 701 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 768 (819)
..+.+...|...|..++++.++++.+. ..||....+.++..+...+.+++|++.|..++. +.|+
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~ 503 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPK 503 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCcc
Confidence 667778888899999999999999887 578888899999999999999999999999987 5674
No 77
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=9.8e-10 Score=120.24 Aligned_cols=216 Identities=11% Similarity=0.020 Sum_probs=133.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003451 573 REIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEIL 652 (819)
Q Consensus 573 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 652 (819)
+++++|...++++++.. +.+...+..++.++...|++++|...|++.++.+ +.+...+..+...+...|++++|+..+
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34566666666666654 4445556666666677777777777777777654 224556777777777888888888888
Q ss_pred HHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003451 653 HFMNDSGFTPS-LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV 731 (819)
Q Consensus 653 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 731 (819)
++..+.. |+ ...+..++..+...|++++|+..++++.+...+-+...+..+..++...|++++|...+.++... .
T Consensus 396 ~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~ 471 (553)
T PRK12370 396 NECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--E 471 (553)
T ss_pred HHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--c
Confidence 8877653 33 22333344456667788888888887775421223555666777777888888888888776553 3
Q ss_pred CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC
Q 003451 732 PDV-ITYNTFVASYAADSLFVEALDVVRYMIKQ-GCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLD 799 (819)
Q Consensus 732 p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 799 (819)
|+. ...+.+...|+..| ++|...++++.+. .-.+....+ +...|.-.|+.+.+..+ +++.+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 333 34445555566666 4677766666542 112222222 44445556676666666 6666553
No 78
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.31 E-value=6.7e-07 Score=95.81 Aligned_cols=589 Identities=11% Similarity=0.029 Sum_probs=297.5
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003451 189 VSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVE 268 (819)
Q Consensus 189 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~ 268 (819)
...|...|-+..+.... =...|..|...|+...+...|...|++..+.. ..+...+......|.+.. +|+.|..+.-
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~-~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEES-TWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccc-cHHHHHHHHH
Confidence 44454444444333211 12467777777776667777777777777654 236667777777777777 7777777633
Q ss_pred HHHhCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 003451 269 GMKSAGVK-PDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLP 347 (819)
Q Consensus 269 ~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 347 (819)
..-+.... .-...|....-.+.+.++...|..-|+...+.. +.|...|..+..+|..+|++..|.++|.+.... .|
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 33222100 001112222333556677777777777777664 336667777777777777777777777776553 22
Q ss_pred C-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------
Q 003451 348 S-IVTYNSLISAYARDGLLEEAMELKTQMVEIG------ITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSA------- 413 (819)
Q Consensus 348 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 413 (819)
+ ...-.-.....+..|++++|+..+....... ..--..++..+...+...|-...|..++++-++.
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 2 2222222334556677777777776655320 0111123333333344444444444444443321
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh---H---HHHHHHHHHHHCCCCC
Q 003451 414 GCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMD---S---EVSGVFKEMKRAGFIP 487 (819)
Q Consensus 414 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~---~a~~~~~~m~~~~~~~ 487 (819)
....+...|..+- +|..+|-.... + .|+......+..-....+.. + -+.+.+-.-. ....
T Consensus 708 ~~~~~~~~Wi~as----------dac~~f~q~e~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~ 773 (1238)
T KOG1127|consen 708 SLQSDRLQWIVAS----------DACYIFSQEEP-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAI 773 (1238)
T ss_pred hhhhhHHHHHHHh----------HHHHHHHHhcc-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhh
Confidence 1011122222111 12222222210 0 12222222222212222211 1 0001000000 0111
Q ss_pred CHHHHHHHHHHHHh----cC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003451 488 ERDTFNTLISAYSR----CG----SFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNE 559 (819)
Q Consensus 488 ~~~~~~~l~~~~~~----~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 559 (819)
+..+|..++..|.+ .| +...|...+...++..-. +..+|+.|.-. ...|.+.-|...|-+-... .+...
T Consensus 774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~ 850 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCH 850 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccch
Confidence 23333333333332 11 223566666666554222 55566665544 4446666666666554433 24455
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH----HcCCCCCHHHHHHH
Q 003451 560 LTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELK----KKGFSPDIPTLNAM 635 (819)
Q Consensus 560 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l 635 (819)
.+|..+...+.+..+++.|...+....... +.+...+..........|+.-++..+|..-- ..|--++..-|..-
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~ 929 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCA 929 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHH
Confidence 677777777778888888888887776643 3444445444445556677767776666522 12222333333333
Q ss_pred HHHHHhcCChHHHHHHHHHHhhC---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhHHH--
Q 003451 636 ISIYGRRQMVAKTNEILHFMNDS---------GFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK-GIKPDIISYN-- 703 (819)
Q Consensus 636 ~~~~~~~~~~~~A~~~~~~~~~~---------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~-- 703 (819)
......+|+.++-+...+++-.. +.+.+.+.|...+....+.+.++.|.+...+.+.. ..+-+...|+
T Consensus 930 te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynva 1009 (1238)
T KOG1127|consen 930 TEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVA 1009 (1238)
T ss_pred HHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 33334555555544433332211 34555667777777777777787777777765421 0123444444
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC-HHHHHHHHHHH
Q 003451 704 --TVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQG-CKPN-QNTYNSIVDGY 779 (819)
Q Consensus 704 --~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-~~~~~~l~~~~ 779 (819)
.+.+.++..|.++.|...+...-. ..|...... --+.+-.|+++++.+.|+++...- -.-+ ......++.+.
T Consensus 1010 k~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt-~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~ 1085 (1238)
T KOG1127|consen 1010 KPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGT-DLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCM 1085 (1238)
T ss_pred hhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhh-hHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHH
Confidence 334556666777765544332211 111111111 112255778888888888887521 1112 24555677777
Q ss_pred HhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 780 CKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 780 ~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
...|..+.|...+-+...+.+.....
T Consensus 1086 g~~~~k~~A~~lLfe~~~ls~~~~~s 1111 (1238)
T KOG1127|consen 1086 GLARQKNDAQFLLFEVKSLSKVQASS 1111 (1238)
T ss_pred hhcccchHHHHHHHHHHHhCccchhh
Confidence 78888888888888877776554333
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=3.3e-09 Score=109.89 Aligned_cols=197 Identities=21% Similarity=0.261 Sum_probs=89.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-----cCC-CCCHH-
Q 003451 565 LLHAYANGREIDQMLALSEEIYS-------GIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKK-----KGF-SPDIP- 630 (819)
Q Consensus 565 l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~~~~~- 630 (819)
+...|...+++++|+.+|++++. ...+.-..++..|..+|.+.|++++|...++...+ .|. .+++.
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 33344445555555555444432 11112234455555556666666666555554432 111 11111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C
Q 003451 631 TLNAMISIYGRRQMVAKTNEILHFMNDS---GFTPS----LTTYNTLMYMYSRSENFARAEDVLREILAK----GIK--P 697 (819)
Q Consensus 631 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--p 697 (819)
.++.++..+...+++++|..+++...+. -+.++ ..+++.+...|...|++++|.+++++++.. +.+ +
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 2344555555666666666655544321 01111 123555555555555555555555555421 011 1
Q ss_pred -CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003451 698 -DIISYNTVIFAYCRNGRMKEASRIFSEMRD----SGL-VPDV-ITYNTFVASYAADSLFVEALDVVRYMI 761 (819)
Q Consensus 698 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 761 (819)
....++.|...|.+.+++++|.++|.+... .|. .|+. .+|.+|+..|...|++++|+++.+.+.
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 123444455555555555555555554432 111 1222 245555555555555555555544443
No 80
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.30 E-value=3.8e-06 Score=90.29 Aligned_cols=616 Identities=10% Similarity=0.004 Sum_probs=310.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 003451 174 SVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCK-PTLITYNVILNV 252 (819)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~ll~~ 252 (819)
-+|..+...|+..-+...|...|+...+-+.. +...+....+.|++...++.|..+.-..-+.... .-...|-.+.-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 46777777887777888888888877765433 7788999999999999999999984433332110 011223333344
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHH--HHHHHHhCCCh
Q 003451 253 YGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNA--LLDVYGKCRRP 330 (819)
Q Consensus 253 ~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~ 330 (819)
|.+.+ +...++.-|+...+..+. |...|..+..+|.+.|++..|.++|.+.... .|+. .|.. ...+-|..|.+
T Consensus 572 yLea~-n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 572 YLEAH-NLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKY 646 (1238)
T ss_pred ccCcc-chhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhH
Confidence 55666 788888888888776533 7788999999999999999999999988876 3332 2322 23456778999
Q ss_pred HHHHHHHHHHHHC------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhc
Q 003451 331 KEAMQVLREMKIN------GCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEI-------GITPDVFTYTTLLSGFEKA 397 (819)
Q Consensus 331 ~~A~~~~~~~~~~------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~pd~~~~~~l~~~~~~~ 397 (819)
.+|+..+..+... +..--..++-.+...+.-.|-..+|.+++++-++. ....+...|..+-.+|.-.
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f 726 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIF 726 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHH
Confidence 9999998887543 11122334444444555556666666666655432 1111222222211111100
Q ss_pred CCHH------HHHHHHH-HHHHCCCC--------------------CCHHHHHHHHHHHHc--------cCCHHHHHHHH
Q 003451 398 GKDE------SAMKVFE-EMRSAGCK--------------------PNICTFNALIKMHGN--------RGNFVEMMKVF 442 (819)
Q Consensus 398 g~~~------~A~~~~~-~~~~~~~~--------------------~~~~~~~~l~~~~~~--------~g~~~~A~~~~ 442 (819)
-..+ ....++. +....+.. .+..+|..++..|.+ ..+...|+..+
T Consensus 727 ~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~ 806 (1238)
T KOG1127|consen 727 SQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCC 806 (1238)
T ss_pred HHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHH
Confidence 0000 0000000 01111111 111222222222211 11122444444
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 003451 443 DEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTP 522 (819)
Q Consensus 443 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 522 (819)
....+.. ..+..+|+.|.-. ...|++.-+..-|-+-.... +....+|..+.-.+.+..+++.|...|.......+.
T Consensus 807 KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~- 882 (1238)
T KOG1127|consen 807 KKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL- 882 (1238)
T ss_pred HHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCch-
Confidence 4444332 2334445444333 44444444444443332221 123445555555556666666666666665554322
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH--H--hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh---------CC
Q 003451 523 DLSTYNAVLAALARGGMWEQSEKIFAEM--K--GGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYS---------GI 589 (819)
Q Consensus 523 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m--~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~ 589 (819)
+...|-.........|+.-++..+|..- . ..|-.++..-|..........|+.++-+...+++-. .+
T Consensus 883 nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~ 962 (1238)
T KOG1127|consen 883 NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLG 962 (1238)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhc
Confidence 3444444443444455555555555441 1 112223333232222223344444443333222211 12
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCCCCHHHHH----HHHHHHHhcCChHHHHHHHHHHhhCCCCCCH
Q 003451 590 IEPHAVLLKTLILVYSKSDLLMDTERAFLELKKK-GFSPDIPTLN----AMISIYGRRQMVAKTNEILHFMNDSGFTPSL 664 (819)
Q Consensus 590 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 664 (819)
.+.....|...+......+.+.+|.....+++.. ...-+...|+ .+...+...|.++.|..-+..... .-+.
T Consensus 963 ~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdE 1039 (1238)
T KOG1127|consen 963 HPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDE 1039 (1238)
T ss_pred CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHH
Confidence 2344445555555555555566655555554310 0011222232 333344455666655443322111 0111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003451 665 TTYNTLMYMYSRSENFARAEDVLREILAKG-IKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVA 742 (819)
Q Consensus 665 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 742 (819)
.+...-+.. .-.++++++.+.|+++..-. -..+ +.....++.+....+.-+.|...+-+.... -.++......+..
T Consensus 1040 di~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l-s~~~~~sll~L~A 1117 (1238)
T KOG1127|consen 1040 DIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL-SKVQASSLLPLPA 1117 (1238)
T ss_pred HHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh-CccchhhHHHHHH
Confidence 111111111 23578888888888887421 1122 344555566666777778888877777664 2345555555544
Q ss_pred HHHhcCChHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHH
Q 003451 743 SYAADSLFVEALDVVRYMIKQ----GCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 743 ~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
.+.-..+-..-..+.+++.+. .+.-++... .-..|.++||-....+.++++.-.+|.++...
T Consensus 1118 ~~ild~da~~ssaileel~kl~k~e~~~~~~~ll--~e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~W 1183 (1238)
T KOG1127|consen 1118 VYILDADAHGSSAILEELEKLLKLEWFCWPPGLL--KELIYALQGRSVAVKKQIQRAVHSNPGDPALW 1183 (1238)
T ss_pred HHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHH--HHHHHHHhhhhHHHHHHHHHHHhcCCCChHHH
Confidence 444333322222223333221 011111111 22235688898999999999999999986664
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.29 E-value=1.2e-07 Score=99.85 Aligned_cols=292 Identities=13% Similarity=0.147 Sum_probs=179.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhc--
Q 003451 321 LDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFT-YTTLLSGFEKA-- 397 (819)
Q Consensus 321 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~-~~~l~~~~~~~-- 397 (819)
...+...|++++|++.+++-... +......+......+.+.|+.++|..++..+++.+ ||... |..+..+....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 45567889999999999886554 44345556667788899999999999999999874 44444 44444444222
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003451 398 ---GKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFV-EMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEV 473 (819)
Q Consensus 398 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 473 (819)
.+.+....+++++...- |.......+.-.+..-..+. .+...+..+...|++ .+++.+-..|.......-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 35677788888877652 22222222221222212232 344455556666643 2344444555544444444
Q ss_pred HHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003451 474 SGVFKEMKRA----G----------FIPER--DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARG 537 (819)
Q Consensus 474 ~~~~~~m~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 537 (819)
..++...... + -.|.. .++..+...|...|++++|+++.+..+++... .+..|..-...+.+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHC
Confidence 4555444322 1 12222 24456677777888888888888888876433 467777777788888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--------HHHHHHHHHHHhcCCC
Q 003451 538 GMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPH--------AVLLKTLILVYSKSDL 609 (819)
Q Consensus 538 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~ 609 (819)
|++++|.+.++.....+ .-|-..=+..+..+.+.|++++|.+++......+..+. .......+.+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888888877654 23444445556667778888888888877766553222 1222445566777777
Q ss_pred HHHHHHHHHHHHH
Q 003451 610 LMDTERAFLELKK 622 (819)
Q Consensus 610 ~~~a~~~~~~~~~ 622 (819)
+..|+..|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766666543
No 82
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.29 E-value=2.2e-09 Score=111.11 Aligned_cols=28 Identities=36% Similarity=0.513 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 490 DTFNTLISAYSRCGSFDQAMSIYKRMLE 517 (819)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 517 (819)
.+++.|...|.+.|++++|...+++..+
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~ 311 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALE 311 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence 4677777788888888888888777654
No 83
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=2.9e-09 Score=116.53 Aligned_cols=217 Identities=10% Similarity=-0.041 Sum_probs=126.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 003451 538 GMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAF 617 (819)
Q Consensus 538 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 617 (819)
+++++|...+++..+.+ +.+...+..+...+...|++++|...++++++.+ +.+...+..++.++...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33566666666666543 3344555555556666666666666666666654 344555566666677777777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003451 618 LELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKP 697 (819)
Q Consensus 618 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 697 (819)
++..+.... +...+..++..+...|++++|...++++.+...+-+...+..+..++...|++++|...++++.... ..
T Consensus 396 ~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~ 473 (553)
T PRK12370 396 NECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-IT 473 (553)
T ss_pred HHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-ch
Confidence 777665322 2222233333455567778888887777654312234456667777778888888888887766531 12
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003451 698 DIISYNTVIFAYCRNGRMKEASRIFSEMRDS-GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 698 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
+....+.+...|+..| ++|...++.+.+. ...+....+ +...+.-.|+-+.+..+ +++.+.
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 3444555555666666 4777767666553 112221122 34445566666666555 666654
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.27 E-value=3.8e-09 Score=105.48 Aligned_cols=230 Identities=12% Similarity=-0.000 Sum_probs=146.2
Q ss_pred CHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003451 574 EIDQMLALSEEIYSGII---EPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNE 650 (819)
Q Consensus 574 ~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 650 (819)
..+.++..+.+++.... +.....+..++..|...|+.++|...|++.++... .+...|+.+...+...|++++|.+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 44555555555554221 11234466667777778888888888888777642 356778888888888888888888
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003451 651 ILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL 730 (819)
Q Consensus 651 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 730 (819)
.+++..+.. +-+..++..++.++...|++++|.+.|++..+. .|+..........+...++.++|...+++.... .
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~ 195 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-L 195 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-C
Confidence 888888753 334567777888888888888888888888875 333221222222334567788888888765542 2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---C--CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCH
Q 003451 731 VPDVITYNTFVASYAADSLFVEALDVVRYMIKQ---G--CKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 731 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
.++. |. ........|++.++ ..++.+.+. . +.| ....|..++..+.+.|++++|+..|+++++.+|.+..
T Consensus 196 ~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 196 DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 2222 22 22334445655444 344444421 0 112 2467888888888999999999999999988876655
Q ss_pred HHHHHHHH
Q 003451 805 ELECKLSD 812 (819)
Q Consensus 805 ~~~~~l~~ 812 (819)
.+.-.+++
T Consensus 272 e~~~~~~e 279 (296)
T PRK11189 272 EHRYALLE 279 (296)
T ss_pred HHHHHHHH
Confidence 44444444
No 85
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.26 E-value=5.6e-09 Score=101.89 Aligned_cols=199 Identities=12% Similarity=0.020 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003451 208 VYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLIS 287 (819)
Q Consensus 208 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 287 (819)
...+..+...|...|++++|...|++..+.. +.+...+..+...+...| ++++|.+.+++..+... .+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~-~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLG-ELEKAEDSFRRALTLNP-NNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 4556666667777777777777777666543 224555566666666666 66666666666665432 23445555555
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHH
Q 003451 288 CCRRGSLHEEAAGVFEEMKLAGF-SPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLE 366 (819)
Q Consensus 288 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 366 (819)
.+...|++++|.+.+++...... ......+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 66666666666666666655321 1223345555566666666666666666665542 223445556666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003451 367 EAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMR 411 (819)
Q Consensus 367 ~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 411 (819)
+|.+.+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666666554 23344444455555556666666666555544
No 86
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.24 E-value=2.8e-07 Score=94.95 Aligned_cols=193 Identities=17% Similarity=0.195 Sum_probs=99.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCH
Q 003451 531 LAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLL 610 (819)
Q Consensus 531 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 610 (819)
+.+-.....|.+|+.+++.+.+.. .-..-|..+...|...|+++.|.++|.+. ..++..+.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 334445566666666666665542 22334555556666666666666665443 1234455666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003451 611 MDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREI 690 (819)
Q Consensus 611 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 690 (819)
++|.++-.+.. |.......|..-..-+-+.|++.+|.+++-.+. .|+. .+.+|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 66665554433 112223334333444455666666665554332 2332 345566666666655555443
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003451 691 LAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVV 757 (819)
Q Consensus 691 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 757 (819)
... .-..+...+..-|-..|+.++|...|-+.- -|...+..|-.++.|++|.++.
T Consensus 877 h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 877 HGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred Chh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 211 113344455555666666666666554432 2334445556666666665443
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.3e-07 Score=94.76 Aligned_cols=224 Identities=15% Similarity=0.110 Sum_probs=135.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC------HHHHHHH
Q 003451 527 YNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPH------AVLLKTL 600 (819)
Q Consensus 527 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l 600 (819)
+..+.++..+..+++.|++.+....... -+..-++....+|...+.+.+.+..-...++.|-+.. ...+..+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4455666666777777777777776653 3444445555667777777766666665555442211 1111223
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCC
Q 003451 601 ILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLT-TYNTLMYMYSRSEN 679 (819)
Q Consensus 601 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~ 679 (819)
+.+|.+.++++.++..|.+.+...-.|+. ..+....+++....+...-. .|... -...-+..+.+.|+
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccC
Confidence 34566667777777777776543222222 12223344554444443332 23221 12233666778888
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHH
Q 003451 680 FARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI-TYNTFVASYAADSLFVEALDVVR 758 (819)
Q Consensus 680 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~ 758 (819)
+..|+..|.+++... +-|...|..-.-+|.+.|.+..|++-.+..++ +.|+.. .|..-+.++....+|++|.+.|.
T Consensus 374 y~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888764 33678888888888888888888888777777 344443 55556666777777888888888
Q ss_pred HHHHcCCCCC
Q 003451 759 YMIKQGCKPN 768 (819)
Q Consensus 759 ~~~~~~~~p~ 768 (819)
+.++. .|+
T Consensus 451 eale~--dp~ 458 (539)
T KOG0548|consen 451 EALEL--DPS 458 (539)
T ss_pred HHHhc--Cch
Confidence 88873 464
No 88
>PF13041 PPR_2: PPR repeat family
Probab=99.20 E-value=4.4e-11 Score=82.43 Aligned_cols=49 Identities=47% Similarity=0.858 Sum_probs=27.7
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003451 347 PSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFE 395 (819)
Q Consensus 347 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~ 395 (819)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1e-07 Score=95.42 Aligned_cols=394 Identities=14% Similarity=0.105 Sum_probs=221.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCC
Q 003451 391 LSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPD-IVTWNTLLAVFGQNGM 469 (819)
Q Consensus 391 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 469 (819)
.++.+..|+++.|+..|.+.+.... +|-..|..-..+|.+.|++++|++=-.+..+. .|+ ...|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 3567788999999999999988753 37888999999999999999999877666654 455 6789999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH---HHHHHHHHHC---CCCCCHHHHHHHHHHHHhc------
Q 003451 470 DSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQA---MSIYKRMLEA---GVTPDLSTYNAVLAALARG------ 537 (819)
Q Consensus 470 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~------ 537 (819)
+++|+.-|.+-++.... +...+..+..++.......+. -.++..+... ........|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 99999999998876432 556677777776211100000 0011111100 0001112222222222111
Q ss_pred ----CCHHHHHHHHHHHH-----hC-------CCCC----------------------CHHHHHHHHHHHHccCCHHHHH
Q 003451 538 ----GMWEQSEKIFAEMK-----GG-------RCKP----------------------NELTYSSLLHAYANGREIDQML 579 (819)
Q Consensus 538 ----g~~~~A~~~~~~m~-----~~-------~~~~----------------------~~~~~~~l~~~~~~~~~~~~a~ 579 (819)
.++..|...+.... .. +..| -..-...+.++..+..+++.++
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 00111111110000 00 0000 0011222333334444455555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCChHHHHHHH
Q 003451 580 ALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIP-------TLNAMISIYGRRQMVAKTNEIL 652 (819)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~ 652 (819)
.-+...++.. .+...++....+|...|.+.++........+.|-. ... .+..+..+|.+.++++.|+..|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 5555544432 33334444444555555554444444443333211 111 1111222344445555555555
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003451 653 HFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV 731 (819)
Q Consensus 653 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 731 (819)
.+.......|+. ..+....+++....+...-. .|. ..-...-...+.+.|++.+|++.|.++++.. .
T Consensus 322 ~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P 389 (539)
T KOG0548|consen 322 QKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-P 389 (539)
T ss_pred HHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-C
Confidence 554433222211 11122233333333322221 122 1111222556778899999999999998864 2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 732 PDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 732 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
-|...|.+.+.+|.+.|.+..|+.=.+..++. .| ....|..-+.++....++++|.+.|+++++.+|++...
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 26668888899999999999999988888884 55 46677777888888889999999999999999887544
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.19 E-value=2.1e-08 Score=89.15 Aligned_cols=206 Identities=10% Similarity=-0.023 Sum_probs=164.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 003451 596 LLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYS 675 (819)
Q Consensus 596 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 675 (819)
+...++..|...|+...|..-+++.++.+.. +..++..+...|.+.|+.+.|.+.|++..... +.+..+.|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 3445677788888998898888888887532 56778888899999999999999999988764 456678888999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003451 676 RSENFARAEDVLREILAKGIK-PDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEAL 754 (819)
Q Consensus 676 ~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 754 (819)
..|.+++|...|++.+..-.- --..+|..+..+-.+.|+.+.|.+.|++.++.... ...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 999999999999998864211 12678888888888999999999999999885222 3346778888899999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 755 DVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 755 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
-++++....+. ++.......+..-...|+.+.|-++=.++...-|...+.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 99999887653 777777777888888899999998888888888876543
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.18 E-value=1.9e-07 Score=87.71 Aligned_cols=191 Identities=12% Similarity=0.045 Sum_probs=89.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcC
Q 003451 460 LLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTY-NAVLAALARGG 538 (819)
Q Consensus 460 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g 538 (819)
+...+...|++.+|+.-|...++.+.. +-.++..-...|...|+..-|+.-+.++++. +||-..- ..-...+.++|
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 344445555555555555555543111 2222223334555556666666666655553 3332111 11223455666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHH----------------HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003451 539 MWEQSEKIFAEMKGGRCKPNELT----------------YSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLIL 602 (819)
Q Consensus 539 ~~~~A~~~~~~m~~~~~~~~~~~----------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 602 (819)
.+++|..-|+.++++. |+..+ ....+..+...|+...++.....+++.. +-+..++..-..
T Consensus 121 ele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rak 197 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAK 197 (504)
T ss_pred cHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHH
Confidence 6666666666666542 21111 1112222334555555555555555532 334444444455
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 003451 603 VYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMND 657 (819)
Q Consensus 603 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 657 (819)
+|...|+...|+.-++...+.. ..+...+.-+...+...|+.+.++....+-++
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 5555555555555554444332 12333444444444555555555555554444
No 92
>PF13041 PPR_2: PPR repeat family
Probab=99.16 E-value=8.9e-11 Score=80.88 Aligned_cols=27 Identities=48% Similarity=0.898 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003451 260 WNKIMALVEGMKSAGVKPDSYTFNTLI 286 (819)
Q Consensus 260 ~~~a~~~~~~~~~~~~~p~~~~~~~ll 286 (819)
+++|.++|++|.+.|+.||..||++++
T Consensus 19 ~~~a~~l~~~M~~~g~~P~~~Ty~~li 45 (50)
T PF13041_consen 19 FEEALKLFKEMKKRGIKPDSYTYNILI 45 (50)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 333333333333333333333333333
No 93
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=4.1e-06 Score=87.90 Aligned_cols=148 Identities=13% Similarity=0.090 Sum_probs=87.8
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHH
Q 003451 182 MLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWN 261 (819)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 261 (819)
.|..-|+.+.|.+-.+.+.. ..+|..|.+++.+..+++-|.-.+..|.... .
T Consensus 737 fyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aR------g---------------- 788 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNAR------G---------------- 788 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhh------h----------------
Confidence 45567899988887776653 4789999999999999999988888776431 0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHH
Q 003451 262 KIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMK 341 (819)
Q Consensus 262 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 341 (819)
.+.+.+..+.| + .+=..+.......|.+++|+.++.+-++. ..|=..|-..|.+++|.++-+.-.
T Consensus 789 --aRAlR~a~q~~---~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~D 853 (1416)
T KOG3617|consen 789 --ARALRRAQQNG---E-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKD 853 (1416)
T ss_pred --HHHHHHHHhCC---c-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcc
Confidence 01111122211 1 11111112233456777777777766653 334455666777777777765432
Q ss_pred HCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 003451 342 INGCLPSIVTYNSLISAYARDGLLEEAMELKTQM 375 (819)
Q Consensus 342 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 375 (819)
. +. -..||......+-..++++.|++.|++.
T Consensus 854 R--iH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 854 R--IH-LRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred c--ee-hhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 2 11 2234555555555667777777776653
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.15 E-value=1.4e-08 Score=90.31 Aligned_cols=168 Identities=12% Similarity=0.028 Sum_probs=144.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 003451 631 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC 710 (819)
Q Consensus 631 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 710 (819)
+...|.-.|...|+...|..-+++.++.. +.+..++..+...|.+.|+.+.|.+.|++.++.. +-+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45667788999999999999999999874 4455688999999999999999999999999864 235788999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHH
Q 003451 711 RNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEA 788 (819)
Q Consensus 711 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 788 (819)
.+|++++|...|++....-..+ -..+|.+++.+..+.|+.+.|...+++.++ ..| .+.....+....++.|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999999742222 235899999999999999999999999998 456 567777899999999999999
Q ss_pred HHHHHHhhhcCCCC
Q 003451 789 ITFVNNLSKLDPHV 802 (819)
Q Consensus 789 ~~~~~~~~~~~p~~ 802 (819)
.-++++.....+..
T Consensus 193 r~~~~~~~~~~~~~ 206 (250)
T COG3063 193 RLYLERYQQRGGAQ 206 (250)
T ss_pred HHHHHHHHhccccc
Confidence 99999998887733
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=2e-07 Score=85.72 Aligned_cols=317 Identities=11% Similarity=0.089 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHH
Q 003451 210 AYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTL-ISC 288 (819)
Q Consensus 210 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l-l~~ 288 (819)
-+++++..+.+..++++|++++..-.+...+ +......+.-+|.... ++..|...++++... .|...-|... ...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q-~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQ-EFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHH-HHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 3556666667777777777777776666322 5556666666666666 677777777777654 3443333322 345
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH--HHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHH
Q 003451 289 CRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLD--VYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLE 366 (819)
Q Consensus 289 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 366 (819)
+.+.+.+..|+.+...|... ++...-..-+. .....+++..+..++++.... .+..+.+.......+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHH
Confidence 66677777888877776653 22222222222 233567788888888777433 24455555566667888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHccCCHHHHHHHH
Q 003451 367 EAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICT----FNALIKMHGNRGNFVEMMKVF 442 (819)
Q Consensus 367 ~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~ 442 (819)
+|.+-|+...+.|---....|+.- -+..+.|+.+.|.+...+++++|++..+.. ..-.+++- ..|+. ..+-
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~~lh 236 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---LVLH 236 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---HHHH
Confidence 888888888775433334566643 345577888888888888888775422111 00001100 00000 0000
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003451 443 DEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA-GFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVT 521 (819)
Q Consensus 443 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 521 (819)
.. --+..+|.-...+.+.|+++.|.+.+-.|--+ ....|+.|...+.-.-. .+++-...+-+.-+.+.+.
T Consensus 237 ~S-------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP- 307 (459)
T KOG4340|consen 237 QS-------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP- 307 (459)
T ss_pred HH-------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-
Confidence 00 01223344444556667777777666665322 22335555544432221 2334444444455555444
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003451 522 PDLSTYNAVLAALARGGMWEQSEKIFAEM 550 (819)
Q Consensus 522 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 550 (819)
-..+|+..++-.||++.-++-|-.++.+-
T Consensus 308 fP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 308 FPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred CChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 24567777777777777777777766553
No 96
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=1.4e-07 Score=94.33 Aligned_cols=226 Identities=9% Similarity=-0.046 Sum_probs=143.8
Q ss_pred CCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 003451 538 GMWEQSEKIFAEMKGGR-CKPN--ELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTE 614 (819)
Q Consensus 538 g~~~~A~~~~~~m~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 614 (819)
+..+.++.-+.+++... ..|+ ...|..+...|...|+.++|...+++.++.. +.+...+..++..+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44566666666666432 1121 2345556666777777777777777777754 445677777788888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003451 615 RAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKG 694 (819)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 694 (819)
..|+..++.... +..++..+...+...|++++|.+.++...+.. |+..........+...++.++|...|++....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 888888765322 45677778888888888999988888888753 44322222222344567889999998776543
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003451 695 IKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS---GL--VP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 768 (819)
Q Consensus 695 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 768 (819)
..++...+ .......|+..++ +.++.+.+. .. .| ...+|..++..+.+.|++++|+..|+++++.+ .||
T Consensus 195 ~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~ 269 (296)
T PRK11189 195 LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYN 269 (296)
T ss_pred CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cch
Confidence 23332222 2233445666554 345555432 11 11 23578899999999999999999999999843 235
Q ss_pred HHHHH
Q 003451 769 QNTYN 773 (819)
Q Consensus 769 ~~~~~ 773 (819)
..-+.
T Consensus 270 ~~e~~ 274 (296)
T PRK11189 270 FVEHR 274 (296)
T ss_pred HHHHH
Confidence 54444
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.04 E-value=1.3e-06 Score=91.18 Aligned_cols=205 Identities=8% Similarity=0.003 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCH--HHHHHH
Q 003451 594 AVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGF-TPSL--TTYNTL 670 (819)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~--~~~~~l 670 (819)
......+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++...... .++. ..|..+
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l 192 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL 192 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence 3444455566677777777777777777654 22455666777777777888888887777765421 1222 234466
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhHH-H--HHHHHHHhcCCHHHHHHH--HHHHHHCCCC--CCHHHHHHHHH
Q 003451 671 MYMYSRSENFARAEDVLREILAKGI-KPDIISY-N--TVIFAYCRNGRMKEASRI--FSEMRDSGLV--PDVITYNTFVA 742 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~~~~~~~g~~--p~~~~~~~l~~ 742 (819)
...+...|++++|..+++++..... .+..... + .++.-+...|..+.+.++ +......... .........+.
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~ 272 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAAL 272 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 7777788888888888887754321 1111111 1 223333444443333333 1111111000 01112225666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC-------C-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC
Q 003451 743 SYAADSLFVEALDVVRYMIKQGCK-------P-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLD 799 (819)
Q Consensus 743 ~~~~~g~~~~A~~~~~~~~~~~~~-------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 799 (819)
++...|+.++|...++.+...... . ...+....+..+...|++++|.+.+..+..+.
T Consensus 273 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 273 ALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 677888888888888887653211 1 23334455666778899999999888887664
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.00 E-value=2e-05 Score=74.40 Aligned_cols=325 Identities=11% Similarity=0.090 Sum_probs=176.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHH
Q 003451 386 TYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWN-TLLAVF 464 (819)
Q Consensus 386 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~ 464 (819)
-..-+...+...|++..|+.-|...++.+ +.+-.++..-...|...|+-.-|+.-+.++++. +||...-. .-...+
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 34445555556666666666666655431 111222233334555566655566555555544 45533221 122344
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003451 465 GQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSE 544 (819)
Q Consensus 465 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 544 (819)
.+.|.+++|..-|+.+++.... ..+ ...+..+.-..++-+ .....+..+.-.|+...|+
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s--~~~---~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPS--NGL---VLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCC--cch---hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHH
Confidence 5555555555555555544221 100 011111111111111 1112233455689999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 003451 545 KIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKG 624 (819)
Q Consensus 545 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 624 (819)
.....+++.. +-|...+..-..+|...|++..|+.-++...+.. ..+...+..+...+...|+.+.++...++.++.
T Consensus 176 ~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl- 252 (504)
T KOG0624|consen 176 EMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL- 252 (504)
T ss_pred HHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-
Confidence 9999998863 5577778888889999999999998888776654 445666677788889999999999999998876
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---hH
Q 003451 625 FSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDI---IS 701 (819)
Q Consensus 625 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~ 701 (819)
.||....... | ..+.+..+.++.|.+ ..+.+++.++++..+..++....... ..
T Consensus 253 -dpdHK~Cf~~---Y---KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~ 309 (504)
T KOG0624|consen 253 -DPDHKLCFPF---Y---KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNG 309 (504)
T ss_pred -CcchhhHHHH---H---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeee
Confidence 4554332111 1 112222222222221 23344555555555555554222111 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 702 YNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 702 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+..+-.++...|++.+|++...++++ +.|| ..++..-+.+|.-..+|++|+.-|+++.+
T Consensus 310 ~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 310 FRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred eheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 22333444555566666666666655 4444 44555566666666666666666666665
No 99
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.99 E-value=4.5e-05 Score=76.80 Aligned_cols=151 Identities=12% Similarity=0.024 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003451 610 LMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTP-SLTTYNTLMYMYSRSENFARAEDVLR 688 (819)
Q Consensus 610 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 688 (819)
.+.....++++...-...-..+|..+++.-.+..-+..|..+|.+..+.+..+ +.+++++++.-|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 34444555555442111122345555666566666777788888777766555 5566666666554 467777788877
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 689 EILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV--ITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 689 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
--++. +..+...-...++.+...|+-..|+.+|++....++.+|. ..|..++.--..-|+...++++-+++..
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 66654 2333444455666777777777788888887776555544 4677777766777777777777766653
No 100
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.96 E-value=0.00014 Score=78.13 Aligned_cols=162 Identities=14% Similarity=0.167 Sum_probs=87.4
Q ss_pred HHHHHHHHHhcCChH---HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 003451 632 LNAMISIYGRRQMVA---KTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFA 708 (819)
Q Consensus 632 ~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 708 (819)
.+.|++.+.+.++.. +|+-+++...... +-|..+--.++..|+-.|-+..|.+.|+.+--..+.-|..-|. +..-
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~ 516 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRR 516 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHH
Confidence 456667777666544 4555555555432 3344444567778888888888888888775444444433332 2244
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH---HHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003451 709 YCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVV---RYMIKQGCKPNQNTYNSIVDGYCKLNQR 785 (819)
Q Consensus 709 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 785 (819)
+...|++..+...+....+. +.-+..----++...++.|.|.+-.++. +++......--..+-+.++..++..++.
T Consensus 517 ~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~ 595 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRG 595 (932)
T ss_pred HHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 55667888888877776652 1111111112233344566665554432 2222111111223445566666677777
Q ss_pred hHHHHHHHHhh
Q 003451 786 YEAITFVNNLS 796 (819)
Q Consensus 786 ~~A~~~~~~~~ 796 (819)
++-...++.+.
T Consensus 596 ~q~~~~~~~~~ 606 (932)
T KOG2053|consen 596 TQLLKLLESMK 606 (932)
T ss_pred HHHHHHHhccc
Confidence 77776666655
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.96 E-value=5.1e-06 Score=86.73 Aligned_cols=262 Identities=10% Similarity=0.038 Sum_probs=138.0
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccC
Q 003451 498 AYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNA---VLAALARGGMWEQSEKIFAEMKGGRCKPN-ELTYSSLLHAYANGR 573 (819)
Q Consensus 498 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~ 573 (819)
.+...|++++|.+++++..+.... +...+.. +.......+..+.+.+.+.... ...|+ ......+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPR-DLLALKLHLGAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhHHHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcC
Confidence 344556666666666666654322 2223321 1111112333444444443311 11222 223334445566677
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCChHHHHH
Q 003451 574 EIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGF-SPDI--PTLNAMISIYGRRQMVAKTNE 650 (819)
Q Consensus 574 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~A~~ 650 (819)
++++|...+++.++.. +.+...+..+..++...|++++|...+++..+... .++. ..+..+...+...|++++|..
T Consensus 129 ~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 129 QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 7777777777776654 34455566667777777777777777777665422 1222 234466777778888888888
Q ss_pred HHHHHhhCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--H-HHHHHCCC-CCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 003451 651 ILHFMNDSGF-TPSLTTY-N--TLMYMYSRSENFARAEDV--L-REILAKGI-KPDIISYNTVIFAYCRNGRMKEASRIF 722 (819)
Q Consensus 651 ~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~ 722 (819)
++++...... .+..... + .++.-+...|....+.+. + ........ ..........+.++...|+.++|..++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 8887754321 1111111 1 223333334433222222 1 11111100 111122234567778888999999999
Q ss_pred HHHHHCCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003451 723 SEMRDSGLV--------PDVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 723 ~~~~~~g~~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
+.+...... .........+.++...|++++|.+.+..++..
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888763211 01223344555677899999999999988763
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=2.2e-06 Score=79.03 Aligned_cols=349 Identities=12% Similarity=0.072 Sum_probs=199.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhc
Q 003451 178 VLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVI-LNVYGKM 256 (819)
Q Consensus 178 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~ 256 (819)
.++.-+-+..++++|.+++..-.+...+ +....+.|..+|.+..++..|-+.++++-.. .|...-|... ...+.+.
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 3344445667788888887776665432 5566777788888888888888888887665 4444444432 3345566
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHH
Q 003451 257 GMPWNKIMALVEGMKSAGVKPDSYTFNTLIS--CCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAM 334 (819)
Q Consensus 257 g~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 334 (819)
+ .+.+|+.+...|... ++...-..-+. .....+++..+..+.++....| +..+.+.......+.|++++|.
T Consensus 92 ~-i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 92 C-IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred c-ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 6 678888887777542 22221111122 2345677777777777765432 4444555555567899999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHH
Q 003451 335 QVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYT----TLLSGFEKAGKDESAMKVFEEM 410 (819)
Q Consensus 335 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~----~l~~~~~~~g~~~~A~~~~~~~ 410 (819)
+-|+...+.|.-....+||.-+.. .+.|+++.|++...+++++|++..+..-. -.+.. -..|+. ..+..
T Consensus 165 qkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~lh~-- 237 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LVLHQ-- 237 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HHHHH--
Confidence 999998887555566778766554 46789999999999999888653221100 00000 000100 00000
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 003451 411 RSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCN-CKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPER 489 (819)
Q Consensus 411 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 489 (819)
++ -+..+|.-...+.+.|+++.|.+.+.+|.-+. ...|++|...+.-. -..+++.+..+-+.-+.+.+. -..
T Consensus 238 --Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ 310 (459)
T KOG4340|consen 238 --SA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPP 310 (459)
T ss_pred --HH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CCh
Confidence 00 11233444445567788888888887775432 23455665544322 123444444444555555533 346
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003451 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVT-PDLSTYNAVLAALARGGMWEQSEKIFAEM 550 (819)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 550 (819)
.||..++-.||+..-++.|..++.+-...... .+...|+.+=....-.-..++|++-++.+
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 78888888888888888888776553222111 12222332222222344556666655444
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=4.4e-08 Score=98.84 Aligned_cols=233 Identities=13% Similarity=0.128 Sum_probs=130.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHH
Q 003451 534 LARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDT 613 (819)
Q Consensus 534 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 613 (819)
+.+.|++.+|.-.|+...+.+ +-+...|..|.......++-..|+..+++.++.. +.+...+..|+-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 455666666666666665542 3344455555555555555555555555555543 33344444444444444444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-H
Q 003451 614 ERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREIL-A 692 (819)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 692 (819)
..+++.-+...++ |..+..+ ...++.+. + ..+.....+.+..++|-++. +
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a-~~~~~~~~--------------~---------~s~~~~~~l~~i~~~fLeaa~~ 423 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSA-GENEDFEN--------------T---------KSFLDSSHLAHIQELFLEAARQ 423 (579)
T ss_pred HHHHHHHHHhCcc-----chhcccc-CccccccC--------------C---------cCCCCHHHHHHHHHHHHHHHHh
Confidence 4444444332111 0000000 00000000 0 00011112233344444433 4
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HH
Q 003451 693 KGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QN 770 (819)
Q Consensus 693 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~ 770 (819)
.+.++|+.++..|.-.|.-.|++++|++.|+.++. ..| |...|+.|+..++...+.++|+..|.++++ ++|. ..
T Consensus 424 ~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR 499 (579)
T KOG1125|consen 424 LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVR 499 (579)
T ss_pred CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeee
Confidence 44446777777777777778888888888888777 444 445777888888877788888888888887 6774 45
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhhcCCC
Q 003451 771 TYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 771 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
....|+-.|...|.++||.+++-.++.+.+.
T Consensus 500 ~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 500 VRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred eehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 6667777888888888888888777766554
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=2e-07 Score=94.28 Aligned_cols=260 Identities=13% Similarity=0.104 Sum_probs=190.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 003451 497 SAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREID 576 (819)
Q Consensus 497 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 576 (819)
.-+.+.|++.+|.-.|+..+..+.. +...|..|.......++-..|+..+++..+.+ +-+....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 3467889999999999999988665 78999999999999999999999999999864 446677888888899999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-H
Q 003451 577 QMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHF-M 655 (819)
Q Consensus 577 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~ 655 (819)
+|++.+++.+...++ ...... -...++...- +-.++...+ ....++|-+ .
T Consensus 371 ~Al~~L~~Wi~~~p~-y~~l~~-----a~~~~~~~~~----------~s~~~~~~l-------------~~i~~~fLeaa 421 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-YVHLVS-----AGENEDFENT----------KSFLDSSHL-------------AHIQELFLEAA 421 (579)
T ss_pred HHHHHHHHHHHhCcc-chhccc-----cCccccccCC----------cCCCCHHHH-------------HHHHHHHHHHH
Confidence 999999998875422 111000 0000000000 001222222 222333333 3
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003451 656 NDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI 735 (819)
Q Consensus 656 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 735 (819)
...+..+|..+...|.-.|.-.|++++|...|+.++... +-|..+||-|...++...+.++|+..|.++++ +.|..+
T Consensus 422 ~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yV 498 (579)
T KOG1125|consen 422 RQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYV 498 (579)
T ss_pred HhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCee
Confidence 344445788888999999999999999999999999853 23688999999999999999999999999998 677765
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHHHcC---------CCCCHHHHHHHHHHHHhcCCHhHHHH
Q 003451 736 -TYNTFVASYAADSLFVEALDVVRYMIKQG---------CKPNQNTYNSIVDGYCKLNQRYEAIT 790 (819)
Q Consensus 736 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~p~~~~~~~l~~~~~~~g~~~~A~~ 790 (819)
+...|+-.|...|.|++|.+++-.++... ..++..+|..|-.++...++.|-+..
T Consensus 499 R~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 499 RVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred eeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 66778888999999999999988876421 11134688888777777777764443
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.92 E-value=6.9e-06 Score=97.54 Aligned_cols=203 Identities=9% Similarity=0.028 Sum_probs=89.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHH----cCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCC--HHHH
Q 003451 599 TLILVYSKSDLLMDTERAFLELKK----KGFS--P-DIPTLNAMISIYGRRQMVAKTNEILHFMNDSG--FTPS--LTTY 667 (819)
Q Consensus 599 ~l~~~~~~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~p~--~~~~ 667 (819)
.+...+...|++++|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+. ...+
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 615 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCL 615 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHH
Confidence 344445555555555555554432 1110 0 11122333344445566666665555544320 0111 1223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHh--HH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHH
Q 003451 668 NTLMYMYSRSENFARAEDVLREILAK--GIKPDII--SY--NTVIFAYCRNGRMKEASRIFSEMRDSGLVPD---VITYN 738 (819)
Q Consensus 668 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~ 738 (819)
..+...+...|++++|.+.++++... ....... .. ...+..+...|+.+.|.+++........... ...+.
T Consensus 616 ~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 695 (903)
T PRK04841 616 AMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWR 695 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHH
Confidence 33444555566666666666555321 0000000 00 0011223345566666666554332111100 01123
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCC
Q 003451 739 TFVASYAADSLFVEALDVVRYMIKQ----GCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
.++.++...|++++|...++++.+. |...+ ..++..++.++.+.|+.++|...+.+++++...
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 4455555666666666666665432 21111 234445555666666666666666666655443
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.91 E-value=8.1e-08 Score=94.18 Aligned_cols=156 Identities=15% Similarity=0.165 Sum_probs=85.1
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH----hcC
Q 003451 638 IYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC----RNG 713 (819)
Q Consensus 638 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g 713 (819)
.+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|. +...++.++. -.+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCch
Confidence 344556666666655431 34455555666666666666666666666653 2232 2222222222 122
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCH-hHHHHH
Q 003451 714 RMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQR-YEAITF 791 (819)
Q Consensus 714 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~-~~A~~~ 791 (819)
++++|..+|+++.+. +.++..+++.++.++...|++++|.++++++.+. .| |+.++..++-+....|+. +.+.++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 466777777776543 4456666666666667777777777776666543 33 455555566555566665 455666
Q ss_pred HHHhhhcCCCCCHH
Q 003451 792 VNNLSKLDPHVTKE 805 (819)
Q Consensus 792 ~~~~~~~~p~~~~~ 805 (819)
+.++....|+.+.+
T Consensus 259 l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 259 LSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHCHHHTTTSHHH
T ss_pred HHHHHHhCCCChHH
Confidence 66666666665443
No 107
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=1.1e-07 Score=93.24 Aligned_cols=252 Identities=12% Similarity=0.075 Sum_probs=146.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 003451 499 YSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQM 578 (819)
Q Consensus 499 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 578 (819)
+.-.|++..++.-.+ ........+......+..++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344566666654443 111111112333344455666666655433 3333322 45555554444433333445555
Q ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 003451 579 LALSEEIYSGIIE-PHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMND 657 (819)
Q Consensus 579 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 657 (819)
+.-+++.+..... .+.......+.++...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5544444333322 23333334445666778888877776542 3566777778888888899999998888886
Q ss_pred CCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003451 658 SGFTPSLTTYNTLMYMYS----RSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD 733 (819)
Q Consensus 658 ~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 733 (819)
. ..|. +...++.++. -.+.+++|..+|+++.+. +.+++.+.+.++.++...|++++|.+++++..+.+. -+
T Consensus 160 ~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~ 234 (290)
T PF04733_consen 160 I--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-ND 234 (290)
T ss_dssp C--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CH
T ss_pred c--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CC
Confidence 5 3343 3333443332 233688899999997664 566788888888888899999999999888776432 25
Q ss_pred HHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCC
Q 003451 734 VITYNTFVASYAADSLF-VEALDVVRYMIKQGCKPN 768 (819)
Q Consensus 734 ~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~ 768 (819)
..++.+++.+....|+. +.+.+++.++... .|+
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~ 268 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPN 268 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTT
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCC
Confidence 56777888877788876 6677788887763 454
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.85 E-value=1.7e-05 Score=94.23 Aligned_cols=336 Identities=10% Similarity=0.005 Sum_probs=185.5
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC------CCC--HHhHHHHHHHH
Q 003451 253 YGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGF------SPD--KVTYNALLDVY 324 (819)
Q Consensus 253 ~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~ 324 (819)
+...| ++..+..+++.+.......+..........+...|++++|...+......-- .+. ......+...+
T Consensus 384 l~~~g-~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 384 LFNQG-ELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHhcC-ChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 33445 5666655555442111111222223334445566777777777766544210 011 11222233445
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHH
Q 003451 325 GKCRRPKEAMQVLREMKINGCLPS----IVTYNSLISAYARDGLLEEAMELKTQMVEI----GIT-PDVFTYTTLLSGFE 395 (819)
Q Consensus 325 ~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-pd~~~~~~l~~~~~ 395 (819)
...|++++|...+++....-...+ ..+.+.+...+...|++++|...+.+.... |-. ....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 567788888877777655311111 123455666677778888887777776542 111 11224455566677
Q ss_pred hcCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC--CCC--CHHHHHHHHHHH
Q 003451 396 KAGKDESAMKVFEEMRS----AGCK--P-NICTFNALIKMHGNRGNFVEMMKVFDEINKCN--CKP--DIVTWNTLLAVF 464 (819)
Q Consensus 396 ~~g~~~~A~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~l~~~~ 464 (819)
..|++++|...+++... .+.. + ....+..+...+...|++++|...+++..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 77888888777776543 2211 1 23344455566667788888877777664321 111 233444556677
Q ss_pred HhcCChHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 003451 465 GQNGMDSEVSGVFKEMKRAG--FIPERD--TF--NTLISAYSRCGSFDQAMSIYKRMLEAGVTPD---LSTYNAVLAALA 535 (819)
Q Consensus 465 ~~~g~~~~a~~~~~~m~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 535 (819)
...|+.++|...++...... ...... .. ...+..+...|+.+.|.+++........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 77888888887777664421 110111 11 1122444557888888888766544221111 111345566777
Q ss_pred hcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 003451 536 RGGMWEQSEKIFAEMKGG----RCKPN-ELTYSSLLHAYANGREIDQMLALSEEIYSGI 589 (819)
Q Consensus 536 ~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 589 (819)
..|++++|...+++.... +...+ ..+...+..++...|+.++|...+.+.++..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 888888888888876542 22222 2345556667888888889988888887754
No 109
>PLN02789 farnesyltranstransferase
Probab=98.80 E-value=5.5e-06 Score=82.46 Aligned_cols=221 Identities=10% Similarity=0.090 Sum_probs=129.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hHHH
Q 003451 572 GREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSD-LLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQM--VAKT 648 (819)
Q Consensus 572 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A 648 (819)
.+..++|+.+..++++.. +.+..++.....++...| ++++++..++++.+.... +..+|+.....+.+.|. .+++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHH
Confidence 344445555555554432 222333333333344444 456666666666654322 44455544444444444 2566
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc---CCH----HHHHHH
Q 003451 649 NEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN---GRM----KEASRI 721 (819)
Q Consensus 649 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~ 721 (819)
++.++++.+.. +-+..+|+....++...|+++++++.++++++.+.. |...|+.....+.+. |.. +++.++
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 77777777653 456677777777777778888888888888776533 566666666555444 222 456666
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC------------
Q 003451 722 FSEMRDSGLVP-DVITYNTFVASYAAD----SLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLN------------ 783 (819)
Q Consensus 722 ~~~~~~~g~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g------------ 783 (819)
..+++.. .| +...|+.+...+... ++..+|.+.+.++.+. .| +...+..|++.|+...
T Consensus 206 ~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 206 TIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--DSNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--cCCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 6666663 33 344677776666662 3446677777776653 34 5566677777776532
Q ss_pred ------CHhHHHHHHHHhhhcCC
Q 003451 784 ------QRYEAITFVNNLSKLDP 800 (819)
Q Consensus 784 ------~~~~A~~~~~~~~~~~p 800 (819)
..++|.++++.+.+.+|
T Consensus 282 ~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 282 LAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred cccccccHHHHHHHHHHHHhhCc
Confidence 34678888888855444
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.80 E-value=2.8e-07 Score=80.53 Aligned_cols=115 Identities=12% Similarity=0.070 Sum_probs=91.0
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 684 EDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 684 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
..++++.++. .|+ .+..+...+...|++++|...|+.+... .| +...|..++.++...|++++|+..++++++
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4556666663 344 3556677888889999999999888874 33 566888888888899999999999999988
Q ss_pred cCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHH
Q 003451 763 QGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 763 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
..| +...+..++.++...|+.++|+..++++++..|.+....
T Consensus 87 --l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 87 --LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred --cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 456 778888888889999999999999999999988886665
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=1.5e-06 Score=90.34 Aligned_cols=220 Identities=15% Similarity=0.121 Sum_probs=128.6
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003451 557 PNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMI 636 (819)
Q Consensus 557 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 636 (819)
|--..-..+...+.+.|-...|+.+++++. .+..++.+|+..|+..+|..+..+..++ +|+...|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 333334445555666666666666666543 2445566666666666666666665553 45666666666
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 003451 637 SIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMK 716 (819)
Q Consensus 637 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 716 (819)
+......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ .--..+|..+..+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 6666555666666666543321 11122222333566666666666665532 223556666666666666777
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHh
Q 003451 717 EASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNL 795 (819)
Q Consensus 717 ~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 795 (819)
.|.+.|..... ..||. ..|+++..+|.+.|+-.+|...++++.+.+ .-+-.+|.+......+.|.+++|++.+.++
T Consensus 537 ~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 537 AAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 77766666665 44544 366666666777766667777777666654 334455555555566667777777766666
Q ss_pred hhc
Q 003451 796 SKL 798 (819)
Q Consensus 796 ~~~ 798 (819)
.+.
T Consensus 614 l~~ 616 (777)
T KOG1128|consen 614 LDL 616 (777)
T ss_pred HHh
Confidence 554
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.79 E-value=1.6e-06 Score=80.26 Aligned_cols=160 Identities=8% Similarity=0.059 Sum_probs=118.1
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH
Q 003451 636 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM 715 (819)
Q Consensus 636 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 715 (819)
+..|...|+++.+....+.+.. |. ..+...++.+++...+++.++.+ +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3456777777776444332221 11 01223667788888888888764 34788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-HhcCC--hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHH
Q 003451 716 KEASRIFSEMRDSGLVP-DVITYNTFVASY-AADSL--FVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAIT 790 (819)
Q Consensus 716 ~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 790 (819)
++|...|++..+. .| +...+..++.++ ...|+ .++|..+++++++. .| +...+..++..+.+.|++++|+.
T Consensus 90 ~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 90 DNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999884 44 556777888764 66677 59999999999984 56 67888899999999999999999
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHH
Q 003451 791 FVNNLSKLDPHVTKELECKLSDRI 814 (819)
Q Consensus 791 ~~~~~~~~~p~~~~~~~~~l~~~l 814 (819)
.++++++..|.++.- ..+|+.+
T Consensus 166 ~~~~aL~l~~~~~~r--~~~i~~i 187 (198)
T PRK10370 166 LWQKVLDLNSPRVNR--TQLVESI 187 (198)
T ss_pred HHHHHHhhCCCCccH--HHHHHHH
Confidence 999999998876543 2344554
No 113
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.78 E-value=0.00031 Score=71.07 Aligned_cols=418 Identities=11% Similarity=0.105 Sum_probs=210.5
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003451 171 LRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVIL 250 (819)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 250 (819)
.+...|..+|+-+... .+++++..++++... ++-....|..-|..-.+..+++..+.+|.+.+.. ..+...|...+
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl 93 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYL 93 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHH
Confidence 3666777777776555 777888888877765 4446677777777777777888888888777655 33566677666
Q ss_pred HHHHhcCCCHH----HHHHHHHH-HHhCCCCCCHH-HHHHHHHH---------HHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 003451 251 NVYGKMGMPWN----KIMALVEG-MKSAGVKPDSY-TFNTLISC---------CRRGSLHEEAAGVFEEMKLAGFSPDKV 315 (819)
Q Consensus 251 ~~~~~~g~~~~----~a~~~~~~-~~~~~~~p~~~-~~~~ll~~---------~~~~g~~~~a~~~~~~~~~~~~~~~~~ 315 (819)
....+...... ...+.|+- +.+.|+.+-+. .|+..+.. +..+.+++..++++++++..-+..=..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 65544321221 22222332 23345444322 34444433 333446666777777777653221111
Q ss_pred hHH----------HH-HHHH--HhCCChHHHHHHHHHHHHC--CCCCCHhh---------------HHHHHHHHHHcCCH
Q 003451 316 TYN----------AL-LDVY--GKCRRPKEAMQVLREMKIN--GCLPSIVT---------------YNSLISAYARDGLL 365 (819)
Q Consensus 316 ~~~----------~l-~~~~--~~~g~~~~A~~~~~~~~~~--g~~~~~~~---------------~~~li~~~~~~g~~ 365 (819)
.|+ .+ ..-+ -+...+..|+++++++... |...+..+ |..+|..--.++.-
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 121 11 1111 1234566777777776532 33222222 33333322111110
Q ss_pred --------HHHHHHHHH-HHHcCCCCCHHH-HHH----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003451 366 --------EEAMELKTQ-MVEIGITPDVFT-YTT----LLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGN 431 (819)
Q Consensus 366 --------~~A~~~~~~-m~~~g~~pd~~~-~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 431 (819)
....=.++. |.-.+..|+..- |.. .-+.+...|+...|.
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~--------------------------- 306 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAK--------------------------- 306 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccch---------------------------
Confidence 000000000 111122222110 000 000111112111111
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH---hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003451 432 RGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFG---QNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQA 508 (819)
Q Consensus 432 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 508 (819)
..-+++..+++.....-...+...|..+...-- +....+...+.++++...-...-..+|..+++.-.+..-+..|
T Consensus 307 -~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaa 385 (656)
T KOG1914|consen 307 -SLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAA 385 (656)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHH
Confidence 112344444444433222223333333332111 1112444555555555432222334566667766676777777
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 003451 509 MSIYKRMLEAGVTP-DLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYS 587 (819)
Q Consensus 509 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 587 (819)
..+|.++.+.+..+ ++..+++++..+| .++.+-|.++|+--.+. +..+..-....+.-+...++-..+..+|+.++.
T Consensus 386 R~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 386 RKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 77777777765544 6666777777666 45667777777764443 223333344455666667777777777777777
Q ss_pred CCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003451 588 GIIEPH--AVLLKTLILVYSKSDLLMDTERAFLELKK 622 (819)
Q Consensus 588 ~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 622 (819)
...+++ ...|..++..-...|++..+.++-++...
T Consensus 464 s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 464 SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 644443 45677777777777887777777666543
No 114
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=6.3e-06 Score=74.66 Aligned_cols=131 Identities=15% Similarity=0.202 Sum_probs=63.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003451 675 SRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEAL 754 (819)
Q Consensus 675 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 754 (819)
...|++++|+++++.+++.+ +.|..++---+.....+|+--+|++-+.+..+. +..|...|..+...|...|++++|.
T Consensus 97 Ea~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred HHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 33455555555555555443 223444444444444445544555555444443 3445555555555555555555555
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHhcC---CHhHHHHHHHHhhhcCCCCCHHHHHH
Q 003451 755 DVVRYMIKQGCKP-NQNTYNSIVDGYCKLN---QRYEAITFVNNLSKLDPHVTKELECK 809 (819)
Q Consensus 755 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~~ 809 (819)
-.+++++= +.| ++-.+..+++.++-.| +++-|.++|.++++++|.+.-..|..
T Consensus 175 fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 175 FCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 55555554 344 4444445555544333 23445555555555555444444333
No 115
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.74 E-value=0.0007 Score=72.91 Aligned_cols=122 Identities=13% Similarity=0.145 Sum_probs=78.6
Q ss_pred HHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003451 667 YNTLMYMYSRSENFA---RAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 743 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 743 (819)
.+.+++.|.+.++.. +|+-+++...... +-|..+--.++..|+-.|-+..|.++|+.+--..+.-|...|.. ...
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~ 516 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRR 516 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHH
Confidence 467778888888765 4555555555442 23556666788999999999999999999876666666554433 234
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHhHHHHHH
Q 003451 744 YAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFV 792 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 792 (819)
+...|++..|...+....+. +.-+ ..+-..++.+| +.|.+.+-.++.
T Consensus 517 ~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~ 564 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPEML 564 (932)
T ss_pred HHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHH
Confidence 56778999999998887763 1221 23333344444 556665544443
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.73 E-value=3e-06 Score=77.61 Aligned_cols=163 Identities=13% Similarity=0.006 Sum_probs=125.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 003451 633 NAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN 712 (819)
Q Consensus 633 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 712 (819)
..+...+...|+-+....+........ +.|......++....+.|++..|...+++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 556666777777777777777655432 4566667778888888999999999999888753 55788899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 003451 713 GRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFV 792 (819)
Q Consensus 713 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 792 (819)
|++++|..-|.+..+.- .-++..+++++..+.-.|+++.|..++......+ .-|..+-..++......|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999998888842 2255678888888889999999999998888642 226777778888888999999998887
Q ss_pred HHhhhcC
Q 003451 793 NNLSKLD 799 (819)
Q Consensus 793 ~~~~~~~ 799 (819)
.+-....
T Consensus 226 ~~e~~~~ 232 (257)
T COG5010 226 VQELLSE 232 (257)
T ss_pred cccccch
Confidence 6655443
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=2e-06 Score=83.53 Aligned_cols=189 Identities=13% Similarity=0.019 Sum_probs=118.4
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH---H
Q 003451 591 EPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFS-PD-IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSL---T 665 (819)
Q Consensus 591 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~---~ 665 (819)
+.....+..++..+...|++++|...|+++.+.... +. ..++..+...+...|++++|...++++.+.. +.+. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHH
Confidence 344556666777777777777777777777664321 11 1345666677777777777777777777642 1111 1
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003451 666 TYNTLMYMYSRS--------ENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVIT 736 (819)
Q Consensus 666 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 736 (819)
++..+..++... |++++|.+.++++++. .|+ ...+..+..... ... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~-------~~-------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN-------RL-------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH-------HH-------HHH
Confidence 344455555543 5677777777777664 233 222221111100 000 00 011
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 003451 737 YNTFVASYAADSLFVEALDVVRYMIKQGC-KP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 737 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 800 (819)
...++..+...|++++|+..++++++..- .| ....+..++.++.+.|++++|..+++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 23566778999999999999999987421 23 357888999999999999999999998887665
No 118
>PLN02789 farnesyltranstransferase
Probab=98.70 E-value=1.1e-05 Score=80.49 Aligned_cols=204 Identities=7% Similarity=0.023 Sum_probs=153.4
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH--
Q 003451 604 YSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQ-MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENF-- 680 (819)
Q Consensus 604 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-- 680 (819)
+...+..++|+..+.++++... .+..+|+.-..++...| .++++++.++++.+.. +.+..+|+.....+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 3455788899999999988632 24556776666777777 6899999999999864 45556787777777777763
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC----hHHH
Q 003451 681 ARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD---SL----FVEA 753 (819)
Q Consensus 681 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g~----~~~A 753 (819)
++++.+++++++.+.+ +..+|+....++...|+++++++.++++++.+.. +..+|+.....+.+. |. .+++
T Consensus 125 ~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 7789999999986533 7889999999999999999999999999997544 566788777666554 32 3578
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHhc----CCHhHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 003451 754 LDVVRYMIKQGCKP-NQNTYNSIVDGYCKL----NQRYEAITFVNNLSKLDPHVTKELECKLSDRI 814 (819)
Q Consensus 754 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l 814 (819)
+.+..++++ ..| |...|+.+...+... ++..+|.+++.++.+.+|+.+. .+.-|++.+
T Consensus 203 l~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~-al~~l~d~~ 265 (320)
T PLN02789 203 LKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVF-ALSDLLDLL 265 (320)
T ss_pred HHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHH-HHHHHHHHH
Confidence 888888888 456 778899999888873 4557799999998887776533 334444443
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.68 E-value=7.8e-06 Score=89.94 Aligned_cols=148 Identities=9% Similarity=-0.033 Sum_probs=94.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHH
Q 003451 661 TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYN 738 (819)
Q Consensus 661 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~ 738 (819)
+.+...+..|.....+.|.+++|..+++.+.+. .|+ ......++.++.+.+++++|+..+++.... .| +.....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 445666666777777777777777777777764 344 555666667777777777777777777663 33 334555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 003451 739 TFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIA 815 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~ 815 (819)
.++.++.+.|++++|..+|+++.+. .| +..++.+++..+.+.|+.++|...|+++.+..-.-. ..|+.++..+.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~ 233 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA-RKLTRRLVDLN 233 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch-HHHHHHHHHHH
Confidence 6666677777777777777777762 33 356666777777777777777777777766644443 44444444433
No 120
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=2.2e-05 Score=71.85 Aligned_cols=249 Identities=15% Similarity=0.116 Sum_probs=146.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 003451 497 SAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREID 576 (819)
Q Consensus 497 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 576 (819)
+-+.-.|.+..++..-....... -+...-.-+..+|...|.+...+. ++.... .+.......+......-+..+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 33444566666555444433321 233333334455666665443322 222222 344444444444444444444
Q ss_pred HHHH-HHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003451 577 QMLA-LSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFM 655 (819)
Q Consensus 577 ~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 655 (819)
.-+. +.+.+.......+......-+..|+..|++++|.+...... +......=+..+.+..+.+-|...+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 33334333334444444455567788888888887776522 2333333344456677788888888888
Q ss_pred hhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003451 656 NDSGFTPSLTTYNTLMYMYSR----SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV 731 (819)
Q Consensus 656 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 731 (819)
.+- .+..+.+.|..++.+ .+.+.+|.-+|+++.++ ..|+..+.+..+.++...|++++|..++++.+.....
T Consensus 164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 874 456677777766654 34688888888888765 5778888888888888888888888888888876333
Q ss_pred CCHHHHHHHHHHHHhcCChHHHH-HHHHHHHH
Q 003451 732 PDVITYNTFVASYAADSLFVEAL-DVVRYMIK 762 (819)
Q Consensus 732 p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 762 (819)
++.++.+++.+-...|.-.++. +.+..+..
T Consensus 240 -dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 240 -DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred -CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 6777777777777777655443 44555554
No 121
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.63 E-value=2.5e-05 Score=87.16 Aligned_cols=205 Identities=12% Similarity=0.042 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003451 523 DLSTYNAVLAALARGGMWEQSEKIFAEMKGGR-CK---PNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLK 598 (819)
Q Consensus 523 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 598 (819)
+...|...|....+.++.++|.+++++++..- +. -....|.++++.-...|.-+...+.|+++.+. -.....+.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 34556666666666667777777766665431 10 11234555555544455555566666665552 22234455
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHH
Q 003451 599 TLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS---LTTYNTLMYMYS 675 (819)
Q Consensus 599 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~ 675 (819)
.|...|.+.+.+++|.++++.|.+.- ......|...+..+.+.++-++|..++.++++. -|. .....-.+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 56666666666666666666666531 234556666666666666666666666666654 222 223344445555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003451 676 RSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD 733 (819)
Q Consensus 676 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 733 (819)
+.|+.+++..+|+..+... +-....|+.+++.-.++|+.+.++.+|++++..++.|-
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 6667777777776666542 22456666777766677777777777777766655543
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.61 E-value=1.6e-05 Score=88.21 Aligned_cols=82 Identities=13% Similarity=0.179 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003451 595 VLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMY 674 (819)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 674 (819)
.++..++.+|.+.|+.++|..+++++++.. +.|..+.|.++..|... ++++|.+++.+.... |
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~ 179 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------F 179 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------H
Confidence 345555555555555555555555555554 23555556666666555 566666655554432 3
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 003451 675 SRSENFARAEDVLREILAK 693 (819)
Q Consensus 675 ~~~g~~~~A~~~~~~~~~~ 693 (819)
...+++..+.++|.++...
T Consensus 180 i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HhhhcchHHHHHHHHHHhc
Confidence 4444555666666665553
No 123
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=5.8e-06 Score=86.21 Aligned_cols=213 Identities=14% Similarity=0.143 Sum_probs=90.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 003451 493 NTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANG 572 (819)
Q Consensus 493 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 572 (819)
..+...+...|-...|..+|++. ..|...+.+|+..|+..+|..+..+..++ +|+...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 33444455555555555555432 33445555555555555555555544442 44555555554444444
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003451 573 REIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEIL 652 (819)
Q Consensus 573 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 652 (819)
.-+++|.++.+..... .-..+.......++++++.+.++.-.+.. +....+|..+..+..+.++++.|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 4444444444433221 11111111222344444444444433321 112333434433444444444444444
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003451 653 HFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMR 726 (819)
Q Consensus 653 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 726 (819)
..-.... +-+...||.+..+|.+.|+..+|...+++..+.+ .-+...|...+....+.|.+++|.+.+.++.
T Consensus 543 ~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 543 HRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 4443321 1122334444444444444444444444444433 1233334444444444444444444444443
No 124
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=6.3e-08 Score=59.42 Aligned_cols=32 Identities=50% Similarity=0.786 Sum_probs=14.8
Q ss_pred CCCCCHHhHHHHHHHHHhCCChHHHHHHHHHH
Q 003451 309 GFSPDKVTYNALLDVYGKCRRPKEAMQVLREM 340 (819)
Q Consensus 309 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 340 (819)
|+.||..+||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 125
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.56 E-value=4.2e-05 Score=85.49 Aligned_cols=230 Identities=9% Similarity=0.034 Sum_probs=163.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003451 488 ERDTFNTLISAYSRCGSFDQAMSIYKRMLEA-GVTP---DLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYS 563 (819)
Q Consensus 488 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 563 (819)
....|...|......++.+.|+++.++++.. ++.- -...|.++++....-|.-+...++|+++.+. ......|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3445777777777788888888888887764 2221 2355667777666677777788888888764 22345677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc
Q 003451 564 SLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSP-DIPTLNAMISIYGRR 642 (819)
Q Consensus 564 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 642 (819)
.|...|.+.+++++|.++++.|.+.. ......|...+..+.+.++-+.|..++.+.++.-... ......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 77888888888888888888888764 3566777788888888888888888888877652221 233455566666788
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHH
Q 003451 643 QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD--IISYNTVIFAYCRNGRMKEASR 720 (819)
Q Consensus 643 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 720 (819)
|+.+.+..+|+...... +-....|+.++++-.++|+.+.++.+|++++..++.+. ...|...+..--..|+-+.+..
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 99999999999888763 45667899999999999999999999999998877654 3445555554445555444433
Q ss_pred H
Q 003451 721 I 721 (819)
Q Consensus 721 ~ 721 (819)
+
T Consensus 1693 V 1693 (1710)
T KOG1070|consen 1693 V 1693 (1710)
T ss_pred H
Confidence 3
No 126
>PF12854 PPR_1: PPR repeat
Probab=98.55 E-value=1.1e-07 Score=58.44 Aligned_cols=32 Identities=50% Similarity=0.958 Sum_probs=20.7
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 003451 344 GCLPSIVTYNSLISAYARDGLLEEAMELKTQM 375 (819)
Q Consensus 344 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 375 (819)
|+.||..|||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.54 E-value=4e-05 Score=85.15 Aligned_cols=218 Identities=11% Similarity=0.126 Sum_probs=142.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003451 523 DLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELT-YSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLI 601 (819)
Q Consensus 523 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 601 (819)
+...+..|+..+...+++++|.++.++..+. .|+... |..+...+.+.++..++..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 4566777778887888888888888866654 344432 33333344455554443333 333
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003451 602 LVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFA 681 (819)
Q Consensus 602 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 681 (819)
.......++.-...++..+.+. ..+..++..++.+|.+.|+.++|..+++++.+.. +-|..+.|.++..|... +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 3444445554445555555554 2345578889999999999999999999999876 66788899999999999 999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------CCCCCHHHHHHHHH
Q 003451 682 RAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS-------------------GLVPDVITYNTFVA 742 (819)
Q Consensus 682 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------g~~p~~~~~~~l~~ 742 (819)
+|++++.+++.. +...+++.++.++|.++.+. |..--..++..+..
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 999999988764 33334455555555555442 21111234444455
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 003451 743 SYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYC 780 (819)
Q Consensus 743 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 780 (819)
.|-...+|++++.+++.+++ +.| |.....-++.+|.
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~--~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILE--HDNKNNKAREELIRFYK 268 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHh--cCCcchhhHHHHHHHHH
Confidence 56666778888888888877 345 5666667777665
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.52 E-value=4.6e-06 Score=72.77 Aligned_cols=115 Identities=12% Similarity=0.160 Sum_probs=89.7
Q ss_pred HHHHHHHCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003451 686 VLREILAKGIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQG 764 (819)
Q Consensus 686 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 764 (819)
.+++++.. .| +......++..+...|++++|.+.++++...+ ..+...+..++..+...|++++|..+++++++.+
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45555554 33 34556677788888899999999998887743 2256778888888889999999999999888742
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCH
Q 003451 765 CKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 765 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
..+...+..++.+|...|++++|...++++.+.+|++..
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 336788888899999999999999999999999887765
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.50 E-value=3.7e-05 Score=70.60 Aligned_cols=160 Identities=13% Similarity=0.027 Sum_probs=126.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 003451 598 KTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRS 677 (819)
Q Consensus 598 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 677 (819)
..+...+...|+-+....+........ ..|.......+....+.|++.+|+..+.+..... ++|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 444555556666666666665544332 3355666678888899999999999999998864 78889999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003451 678 ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVV 757 (819)
Q Consensus 678 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 757 (819)
|+++.|..-|.+..+.. .-+...++.+...|.-.|+.+.|..++......+.. |..+-.+++......|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999999999863 235788889999999999999999999998875432 6677788888889999999999887
Q ss_pred HHHH
Q 003451 758 RYMI 761 (819)
Q Consensus 758 ~~~~ 761 (819)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 6654
No 130
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.49 E-value=2.6e-05 Score=72.25 Aligned_cols=152 Identities=10% Similarity=0.090 Sum_probs=109.1
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003451 602 LVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFA 681 (819)
Q Consensus 602 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 681 (819)
..|...|+++.+....+.+... . ..+...++.+++...++...+.. +.+...|..++..|...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHH
Confidence 4566777766654443322211 0 01223566677777777777654 667788899999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHH-HhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003451 682 RAEDVLREILAKGIKPDIISYNTVIFAY-CRNGR--MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVR 758 (819)
Q Consensus 682 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 758 (819)
+|...|++..+... .+...+..+..++ ...|+ .++|.+++++..+.+.. +..++..++..+...|++++|+..++
T Consensus 91 ~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988642 3677888888764 66677 58999999999885332 55688888888999999999999999
Q ss_pred HHHHcCCCCCH
Q 003451 759 YMIKQGCKPNQ 769 (819)
Q Consensus 759 ~~~~~~~~p~~ 769 (819)
++++.. .|+.
T Consensus 169 ~aL~l~-~~~~ 178 (198)
T PRK10370 169 KVLDLN-SPRV 178 (198)
T ss_pred HHHhhC-CCCc
Confidence 998752 4443
No 131
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.47 E-value=7.1e-06 Score=71.74 Aligned_cols=122 Identities=8% Similarity=-0.081 Sum_probs=91.5
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003451 650 EILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG 729 (819)
Q Consensus 650 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 729 (819)
.++++..+. .|+. +..+..++...|++++|...|+.++... +.+...|..++.++...|++++|...|+++.+..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345555543 3443 4456778888999999999999988764 3368888888899999999999999999998843
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 003451 730 LVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGY 779 (819)
Q Consensus 730 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 779 (819)
..+...+..++.++...|++++|+..++.+++ ..| +...|...+.++
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASWSEIRQNAQ 136 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHH
Confidence 22567888888899999999999999999988 456 455555555443
No 132
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.44 E-value=2.4e-05 Score=75.95 Aligned_cols=188 Identities=11% Similarity=-0.058 Sum_probs=132.5
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCH--HH
Q 003451 556 KPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEP--HAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDI--PT 631 (819)
Q Consensus 556 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 631 (819)
......+..+...+...|++++|...+++++...... ....+..++.++...|++++|...++++.+....... .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3456677888888999999999999999998864221 1246677889999999999999999999976432121 24
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 003451 632 LNAMISIYGRR--------QMVAKTNEILHFMNDSGFTPSL-TTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISY 702 (819)
Q Consensus 632 ~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 702 (819)
+..+...+... |+.++|.+.++.+.+.. |+. ..+..+..... ... ... ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~~--------~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RLA--------GKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HHH--------HHH
Confidence 55556666554 78899999999998763 443 23322211100 000 000 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003451 703 NTVIFAYCRNGRMKEASRIFSEMRDSGL-VP-DVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 703 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
..+...|.+.|++++|...++++.+... .| ....+..++.++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2566778899999999999999987521 12 3468889999999999999999999888763
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.43 E-value=7.2e-05 Score=82.54 Aligned_cols=133 Identities=8% Similarity=0.023 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003451 592 PHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLM 671 (819)
Q Consensus 592 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 671 (819)
.+...+..|+.+....|.+++|..+++.+.+.. +.+......++..+.+.+++++|+...++..... +-+......+.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 334444445555555555555555555554432 1123334444444555555555555555554432 22333344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003451 672 YMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 672 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 727 (819)
.++.+.|++++|..+|+++...+ .-+..++..+..++...|+.++|...|++..+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555555554421 11244444455555555555555555555444
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00021 Score=65.60 Aligned_cols=137 Identities=17% Similarity=0.175 Sum_probs=76.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003451 477 FKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCK 556 (819)
Q Consensus 477 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 556 (819)
.+.+......-+......-...|++.|++++|++...... +.+..-.=+..+.+..+.+-|.+.+++|.+.
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--- 166 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI--- 166 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 3334443333233333344456777777777777766521 3333333344566677777788888877764
Q ss_pred CCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 003451 557 PNELTYSSLLHAYAN----GREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKK 623 (819)
Q Consensus 557 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 623 (819)
.+..|.+.|..+|.+ .+++.+|.-+|+++.++ .+|+..+.+..+.++...|++++|..+++..+.+
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 355666667666654 33455566666665543 2455555555555555555555555555555544
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=0.00029 Score=70.72 Aligned_cols=149 Identities=15% Similarity=0.035 Sum_probs=105.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCC
Q 003451 601 ILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS-LTTYNTLMYMYSRSEN 679 (819)
Q Consensus 601 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 679 (819)
...+...|++++|+..++.++..- +.|+..+......+.+.++..+|.+.++++... .|+ ......+..+|.+.|+
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCC
Confidence 334455677777888777777652 234555566667778888888888888888875 354 4556677788888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003451 680 FARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRY 759 (819)
Q Consensus 680 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 759 (819)
+++|+.+++...... +.|+..|..|..+|...|+..+|..... +.|...|++++|+..+..
T Consensus 390 ~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 390 PQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMR 450 (484)
T ss_pred hHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHH
Confidence 888888888877663 4478888888888888888777665443 346677888888888888
Q ss_pred HHHcCCCCCHHHH
Q 003451 760 MIKQGCKPNQNTY 772 (819)
Q Consensus 760 ~~~~~~~p~~~~~ 772 (819)
+.+. .+.+...|
T Consensus 451 A~~~-~~~~~~~~ 462 (484)
T COG4783 451 ASQQ-VKLGFPDW 462 (484)
T ss_pred HHHh-ccCCcHHH
Confidence 8765 35555444
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.32 E-value=3.5e-05 Score=67.81 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=89.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 003451 667 YNTLMYMYSRSENFARAEDVLREILAKGIKPD---IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV--ITYNTFV 741 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~ 741 (819)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+.+....++. .....++
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33444444 4788888888888888753 222 234445667888889999999999998886522221 2555678
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 003451 742 ASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLS 796 (819)
Q Consensus 742 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 796 (819)
..+...|++++|+..++..... ......+...+++|.+.|++++|+..|++++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8888999999999998774332 2245677788999999999999999998763
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=0.00047 Score=69.30 Aligned_cols=138 Identities=17% Similarity=0.117 Sum_probs=68.8
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHH
Q 003451 640 GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEA 718 (819)
Q Consensus 640 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 718 (819)
...|++++|+..+..+.... +.|...+......+.+.++.++|.+.++++... .|+ ......+..+|.+.|+.++|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 34455555555555554431 223333344444555555555555555555543 233 34444445555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 003451 719 SRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 719 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
+.+++..... ..-|+..|..|+.+|...|+..+|.... +..|.-.|++++|+.++..+.+.
T Consensus 394 i~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 394 IRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence 5555555443 1224445555555555555544443322 22333456666666666666665
Q ss_pred C
Q 003451 799 D 799 (819)
Q Consensus 799 ~ 799 (819)
.
T Consensus 455 ~ 455 (484)
T COG4783 455 V 455 (484)
T ss_pred c
Confidence 4
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=0.0002 Score=65.24 Aligned_cols=166 Identities=11% Similarity=0.115 Sum_probs=128.9
Q ss_pred CChHHHHHHHHHHhhC---C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH
Q 003451 643 QMVAKTNEILHFMNDS---G-FTPSLTT-YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKE 717 (819)
Q Consensus 643 ~~~~~A~~~~~~~~~~---~-~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 717 (819)
.+.++..+++..+... | ..++..+ |..++.+....|+.+-|...++++.+. ++-+..+-..-+..+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 4567777777666532 3 4566654 677778888899999999999999876 33333333333445667899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 003451 718 ASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 718 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
|.++++.+++.. +-|..++..-+...-..|+--+|++.+.+..+. +.-|...|..+...|...|++++|.--++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999999875 336667777777788889988999999998875 667999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHH
Q 003451 798 LDPHVTKELECKLSD 812 (819)
Q Consensus 798 ~~p~~~~~~~~~l~~ 812 (819)
..|.++-. +.++.+
T Consensus 183 ~~P~n~l~-f~rlae 196 (289)
T KOG3060|consen 183 IQPFNPLY-FQRLAE 196 (289)
T ss_pred cCCCcHHH-HHHHHH
Confidence 99998544 345444
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.30 E-value=3.5e-05 Score=67.18 Aligned_cols=116 Identities=12% Similarity=0.014 Sum_probs=84.5
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003451 651 ILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL 730 (819)
Q Consensus 651 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 730 (819)
.++.+.... +.+......++..+...|++++|.+.|+++...+ +.+...|..+...+...|++++|..++++..+.+
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 344455432 2233456667777888888888888888887753 3367788888888888888888888888887753
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003451 731 VPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNT 771 (819)
Q Consensus 731 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 771 (819)
..+...+..++.++...|++++|+..++++++ ..|+...
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccch
Confidence 23556777888888888999999998888887 4565443
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.28 E-value=4e-05 Score=77.86 Aligned_cols=129 Identities=17% Similarity=0.217 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003451 665 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASY 744 (819)
Q Consensus 665 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 744 (819)
....+++..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|.+++++.++.. .-|...+..-+..+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344556666677778888888888887753 44 34456777777778888888888887642 23566677777778
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 003451 745 AADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 745 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 800 (819)
...++++.|+++.+++.+ ..| +..+|..|+.+|...|++++|+..++.+.-..+
T Consensus 245 l~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTY 299 (395)
T ss_pred HhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence 888888888888888887 567 567888888888888888888888887765533
No 141
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=2e-05 Score=73.80 Aligned_cols=91 Identities=22% Similarity=0.318 Sum_probs=63.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHh
Q 003451 709 YCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRY 786 (819)
Q Consensus 709 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 786 (819)
+.+.++|++|+..|.++++ +.| |.+.|..-+.+|++.|.++.|++-.+.++. +.| ....|..|+.+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHH
Confidence 4566777777777777776 444 344455666777777777777777777776 456 3567777777777777777
Q ss_pred HHHHHHHHhhhcCCCCC
Q 003451 787 EAITFVNNLSKLDPHVT 803 (819)
Q Consensus 787 ~A~~~~~~~~~~~p~~~ 803 (819)
+|++.|+++++++|++.
T Consensus 167 ~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHHhhhccCCCcH
Confidence 77777777777777775
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.19 E-value=3.5e-05 Score=65.44 Aligned_cols=106 Identities=13% Similarity=0.105 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-CHHHHHHH
Q 003451 700 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV--PDVITYNTFVASYAADSLFVEALDVVRYMIKQGCK-P-NQNTYNSI 775 (819)
Q Consensus 700 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l 775 (819)
.++..++..+.+.|++++|.+.|+++...... .....+..++.++.+.|++++|+.+++.+...... + ...++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35566677788888888888888888764211 11346667888888888899999998888864211 1 24567788
Q ss_pred HHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 776 VDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 776 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
+.++.+.|+.++|...++++.+..|+++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 888888899999999999998888877543
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.12 E-value=0.00015 Score=63.69 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=88.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHH
Q 003451 632 LNAMISIYGRRQMVAKTNEILHFMNDSGFTPSL---TTYNTLMYMYSRSENFARAEDVLREILAKGIKPD--IISYNTVI 706 (819)
Q Consensus 632 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~ 706 (819)
|..++..+ ..++...+.+.++.+.+.. +.+. ...-.+...+...|++++|...|+.+......+. ......+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33444444 3677888888888888753 3332 2334456778888999999999999988652222 23455577
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003451 707 FAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYM 760 (819)
Q Consensus 707 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 760 (819)
..+...|++++|+..++...... .....+...+.++.+.|++++|+..|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 88889999999999987744322 23456778888899999999999988875
No 144
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.10 E-value=0.014 Score=58.30 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=80.6
Q ss_pred HHhcCC-HHHHHHHHHHHHHCCCCCCHhHHHHHH----HHHHh---cCCHHHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 003451 674 YSRSEN-FARAEDVLREILAKGIKPDIISYNTVI----FAYCR---NGRMKEASRIFSEMRDSGLVPD----VITYNTFV 741 (819)
Q Consensus 674 ~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~ 741 (819)
+-+.|. -++|+++++.+++-. .-|...-|.+. .+|.+ ...+.+-.++-+-+.+.|+.|- ...-+.+.
T Consensus 389 lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 334454 788899988888641 22333333222 22322 1223444444444445677653 23445555
Q ss_pred HH--HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 003451 742 AS--YAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 742 ~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
.+ +..+|++.++.-+-.-+.+ +.|++.+|..++-++....+++||..++..+.-
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 54 6789999999988888887 789999999999999999999999999988754
No 145
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.07 E-value=0.00012 Score=62.74 Aligned_cols=96 Identities=10% Similarity=0.026 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003451 700 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 700 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 777 (819)
.....+...+...|++++|.++|+-+... .| +...|..|+.++-..|++++|+..|.++... .| |+..+..++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--~~ddp~~~~~ag~ 111 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--KIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHH
Confidence 34445566677888888888888888773 44 3446668888888888888888888888874 45 6788888888
Q ss_pred HHHhcCCHhHHHHHHHHhhhcC
Q 003451 778 GYCKLNQRYEAITFVNNLSKLD 799 (819)
Q Consensus 778 ~~~~~g~~~~A~~~~~~~~~~~ 799 (819)
++.+.|+.++|++.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 8888888888888888887765
No 146
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=0.012 Score=61.66 Aligned_cols=156 Identities=9% Similarity=0.001 Sum_probs=101.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 003451 292 GSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKIN-GCLPSIVTYNSLISAYARDGLLEEAME 370 (819)
Q Consensus 292 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~ 370 (819)
.|++++|++++-+|.++. ..|..+.+.|++-.+.++++.-... ...--..+|+.+...++....+++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388899999988887763 3466777888888777776542111 001124578888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 003451 371 LKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNC 450 (819)
Q Consensus 371 ~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 450 (819)
.+..-.. ....+.++.+..++++-..+-..+ +.+....-.+.+++...|.-++|.+.+-+...
T Consensus 818 yY~~~~~---------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~--- 880 (1189)
T KOG2041|consen 818 YYSYCGD---------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL--- 880 (1189)
T ss_pred HHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC---
Confidence 8775332 123466666666666655544433 33556667788888888888888887755321
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003451 451 KPDIVTWNTLLAVFGQNGMDSEVSGVFKE 479 (819)
Q Consensus 451 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 479 (819)
| ...+..|....++.+|.++-+.
T Consensus 881 -p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 881 -P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred -c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1334556666777777776554
No 147
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.04 E-value=8.3e-05 Score=76.21 Aligned_cols=89 Identities=13% Similarity=0.005 Sum_probs=58.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 003451 671 MYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSL 749 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 749 (819)
+..+...|++++|++.|+++++... .+...|..+..+|.+.|++++|+..++++++. .| +...|..++.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCC
Confidence 4455666777777777777776532 24566666667777777777777777777663 33 34466666677777777
Q ss_pred hHHHHHHHHHHHH
Q 003451 750 FVEALDVVRYMIK 762 (819)
Q Consensus 750 ~~~A~~~~~~~~~ 762 (819)
+++|+..++++++
T Consensus 86 ~~eA~~~~~~al~ 98 (356)
T PLN03088 86 YQTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777766
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.02 E-value=2e-05 Score=58.99 Aligned_cols=66 Identities=26% Similarity=0.347 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC-CHhHHHHHHHHhhhcCC
Q 003451 733 DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLN-QRYEAITFVNNLSKLDP 800 (819)
Q Consensus 733 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 800 (819)
+..+|..++..+...|++++|+..++++++. .| +...|..++.+|.+.| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567888999999999999999999999984 56 6788889999999999 79999999999999887
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.01 E-value=9.8e-05 Score=59.70 Aligned_cols=97 Identities=21% Similarity=0.252 Sum_probs=70.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003451 702 YNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCK 781 (819)
Q Consensus 702 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 781 (819)
+..++..+...|++++|...++++.+.. ..+...+..++..+...|++++|.+.+++..+.. ..+...+..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4556667777788888888888877642 2233567777777888888888888888887742 2244677788888888
Q ss_pred cCCHhHHHHHHHHhhhcCC
Q 003451 782 LNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 782 ~g~~~~A~~~~~~~~~~~p 800 (819)
.|++++|...++++.+..|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 8888888888888877765
No 150
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.00 E-value=0.003 Score=54.72 Aligned_cols=132 Identities=11% Similarity=0.067 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhHH
Q 003451 626 SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD---IISY 702 (819)
Q Consensus 626 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~ 702 (819)
.|.+..-..|..+....|+..+|...|++...--+.-|....-.+.++....+++..|...++++.+.. |+ +...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 345555556666666677777777777666653344556666666666666677777777776666542 22 3344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003451 703 NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMI 761 (819)
Q Consensus 703 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 761 (819)
-.+...|...|++.+|+..|+.... ..|+...-..+...+.++|+.++|..-+....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 4555666666777777777766666 35555555555556666666666554444443
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.97 E-value=0.00029 Score=64.13 Aligned_cols=114 Identities=15% Similarity=0.114 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 003451 666 TYNTLMYMYSRSENFARAEDVLREILAKGIKPD--IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVA 742 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 742 (819)
.+..++..+...|++++|...|+++++....+. ...+..++.++.+.|++++|...++++.+. .| +...+..++.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 344555555556666666666665554321111 244555555555556666666665555552 22 2334444555
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCC
Q 003451 743 SYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 743 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
++...|+...+..-++.+.. .+++|...++++.+.+|++
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhCchh
Confidence 55555554444433333221 1678888999999988887
No 152
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.97 E-value=2.2e-05 Score=57.86 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=50.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCC
Q 003451 739 TFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
.++..+...|++++|+..++++++. .| +...+..++.++...|++++|...++++++..|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3566788889999999999999884 46 67888889999999999999999999999888876
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.96 E-value=1.6e-05 Score=62.10 Aligned_cols=81 Identities=17% Similarity=0.301 Sum_probs=51.9
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHH
Q 003451 712 NGRMKEASRIFSEMRDSGLV-PDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAI 789 (819)
Q Consensus 712 ~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 789 (819)
.|++++|+.+++++.+.... ++...+..++.+|.+.|++++|+.++++ .+ ..+ +......++.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46777777777777774221 2344555677777888888888887777 32 223 3344556677777888888888
Q ss_pred HHHHHh
Q 003451 790 TFVNNL 795 (819)
Q Consensus 790 ~~~~~~ 795 (819)
+.++++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 777763
No 154
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.0016 Score=63.85 Aligned_cols=154 Identities=13% Similarity=-0.038 Sum_probs=64.8
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHH-------------HHH
Q 003451 569 YANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTL-------------NAM 635 (819)
Q Consensus 569 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~l 635 (819)
+...+++++|...--.+++.. ..+......-..++.-.++.+.+...|++.+..+ |+.... ..-
T Consensus 179 l~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhh
Confidence 334555555555544444432 2222222222233344455555555555555432 222111 111
Q ss_pred HHHHHhcCChHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHh
Q 003451 636 ISIYGRRQMVAKTNEILHFMNDS---GFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCR 711 (819)
Q Consensus 636 ~~~~~~~~~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 711 (819)
.+-..+.|.+.+|.+.+.+.+.. ...++...|.....+..+.|+.++|+.--+..... .+. ...|..-..++..
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHH
Confidence 12223455555555555555432 12223333444444445555555555555544432 111 1122222233444
Q ss_pred cCCHHHHHHHHHHHHH
Q 003451 712 NGRMKEASRIFSEMRD 727 (819)
Q Consensus 712 ~g~~~~A~~~~~~~~~ 727 (819)
.++|++|++-+++..+
T Consensus 334 le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555555555555544
No 155
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.95 E-value=0.0029 Score=54.87 Aligned_cols=133 Identities=14% Similarity=0.098 Sum_probs=109.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 003451 661 TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG---LVPDVITY 737 (819)
Q Consensus 661 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---~~p~~~~~ 737 (819)
.|+...--.+..+..+.|+..+|...|++...--+.-|....-.+..+....++..+|...++++.+.+ -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 577777778999999999999999999999865455678889999999999999999999999998853 2344 55
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 003451 738 NTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 738 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
..++..+...|++.+|...++.++. .-|+...-...+..+.++|+.++|...+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 6778899999999999999999998 567766655667778899998888776655443
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.94 E-value=0.00077 Score=72.20 Aligned_cols=140 Identities=15% Similarity=0.081 Sum_probs=95.1
Q ss_pred CCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 003451 661 TPSLTTYNTLMYMYSR--S---ENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRN--------GRMKEASRIFSEMR 726 (819)
Q Consensus 661 ~p~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~ 726 (819)
+.+...|..++.+... . ++.++|..+|+++++. .|+ ...|..+..++... +++..+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4566666666665332 2 2366778888888775 444 44444444433322 12334444444443
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCH
Q 003451 727 DS-GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 727 ~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
.. ....+...|..++..+...|++++|...++++++ +.|+...|..++..|...|+.++|.+.++++..++|..+.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 32 1233556777777777788999999999999998 4578888999999999999999999999999999998764
No 157
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.0018 Score=63.48 Aligned_cols=91 Identities=13% Similarity=0.093 Sum_probs=49.7
Q ss_pred HHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 003451 709 YCRNGRMKEASRIFSEMRDS---GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQ 784 (819)
Q Consensus 709 ~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 784 (819)
..+.|++.+|.+.|.+.+.. +..++...|...+.+..+.|+.++|+.-.+++.+ +.+. ...|..-+.++...++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666542 1223333455555555666666666666666655 2331 2333444555556666
Q ss_pred HhHHHHHHHHhhhcCCC
Q 003451 785 RYEAITFVNNLSKLDPH 801 (819)
Q Consensus 785 ~~~A~~~~~~~~~~~p~ 801 (819)
|++|.+-++++.+..-+
T Consensus 337 ~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 66666666666655443
No 158
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.93 E-value=2e-05 Score=49.41 Aligned_cols=33 Identities=52% Similarity=0.831 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003451 351 TYNSLISAYARDGLLEEAMELKTQMVEIGITPD 383 (819)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 383 (819)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666655
No 159
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.00017 Score=67.85 Aligned_cols=92 Identities=16% Similarity=0.307 Sum_probs=45.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHH
Q 003451 675 SRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEA 753 (819)
Q Consensus 675 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A 753 (819)
.+.++|++|+..|.++++.. +-|.+.|..-..+|++.|.++.|++-.+..+. +.|.. .+|..|+.+|...|++++|
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHH
Confidence 34455555555555555532 12344445555555555555555555555544 23322 2455555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHH
Q 003451 754 LDVVRYMIKQGCKPNQNT 771 (819)
Q Consensus 754 ~~~~~~~~~~~~~p~~~~ 771 (819)
++.|+++++ +.|+..+
T Consensus 169 ~~aykKaLe--ldP~Ne~ 184 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNES 184 (304)
T ss_pred HHHHHhhhc--cCCCcHH
Confidence 555555555 4454333
No 160
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.91 E-value=0.032 Score=55.83 Aligned_cols=135 Identities=13% Similarity=0.108 Sum_probs=63.4
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHc
Q 003451 220 SNGRYREAVMVFKKMEEEGCKPT------LITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISC--CRR 291 (819)
Q Consensus 220 ~~g~~~~A~~~~~~m~~~~~~~~------~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~--~~~ 291 (819)
+++++.+|..+|.++.+.- ..+ .+..+.++++|.... .+.....+....+.. | ...|..+..+ +.+
T Consensus 18 kq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~n--ld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLNN--LDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHhh--HHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 4555555555555554331 111 223345555555543 344444333333321 1 1122222222 345
Q ss_pred CCCHHHHHHHHHHHHHC--CCC------------CCHHhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCCHhhHH
Q 003451 292 GSLHEEAAGVFEEMKLA--GFS------------PDKVTYNALLDVYGKCRRPKEAMQVLREMKIN----GCLPSIVTYN 353 (819)
Q Consensus 292 ~g~~~~a~~~~~~~~~~--~~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~~~~~~~~ 353 (819)
.+.+.+|.+.+...... +.. +|-..=+..+..+.+.|++.+++.++++|... .+.-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 56666666665554433 111 11112244456666777777777777666543 2334666666
Q ss_pred HHHHHHH
Q 003451 354 SLISAYA 360 (819)
Q Consensus 354 ~li~~~~ 360 (819)
.++-.+.
T Consensus 172 ~~vlmls 178 (549)
T PF07079_consen 172 RAVLMLS 178 (549)
T ss_pred HHHHHHh
Confidence 6554443
No 161
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.90 E-value=0.033 Score=58.55 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003451 700 ISYNTVIFAYCRNGRMKEASRIFSEMRDS-GLVPDVITYNTFVASYAADSLFVEALDVVRYM 760 (819)
Q Consensus 700 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 760 (819)
..|..|+.-....|.++.|++.--.+.+. .+-|..+.|..++-+-|....+...-+.+-++
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 33444444455567777776654444332 24555566666655555544444333333333
No 162
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.89 E-value=0.0038 Score=62.02 Aligned_cols=89 Identities=18% Similarity=0.226 Sum_probs=45.0
Q ss_pred HHHhc-CCHHHHHHHHHHHHHC----CCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHH-HHHH
Q 003451 673 MYSRS-ENFARAEDVLREILAK----GIKPD--IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV-----PDVI-TYNT 739 (819)
Q Consensus 673 ~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-----p~~~-~~~~ 739 (819)
.|... |++++|++.|++..+. + .+. ..++..++..+.+.|++++|.++|+++...-.. .+.. .+..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 34444 5566666666555421 1 111 334455566667777777777777776653221 1111 2233
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 003451 740 FVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 740 l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.+-++...|+.-.|.+.+++...
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455566777777777777664
No 163
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.88 E-value=0.00083 Score=65.51 Aligned_cols=133 Identities=12% Similarity=0.060 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHH
Q 003451 666 TYNTLMYMYSRSENFARAEDVLREIL----AKGIK-PDIISYNTVIFAYCRNGRMKEASRIFSEMRDS----GL-VPDVI 735 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~-~p~~~ 735 (819)
.|..|.+.|.-.|+++.|+...+.-+ +.|-. .....+..+..++.-.|+++.|.+.|+..... |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45556666666677777776655322 11211 12455666777777777777777777665431 21 11223
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 003451 736 TYNTFVASYAADSLFVEALDVVRYMIK----QG-CKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
....++..|.-..++++|+++..+-++ .+ ..-....+.+|+.++...|..++|..+.++.++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 455667777777777777777665332 11 1113456777777777778777877777765544
No 164
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.85 E-value=2.7e-05 Score=48.80 Aligned_cols=33 Identities=39% Similarity=0.596 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 003451 316 TYNALLDVYGKCRRPKEAMQVLREMKINGCLPS 348 (819)
Q Consensus 316 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 348 (819)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666665554
No 165
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.84 E-value=0.0007 Score=68.99 Aligned_cols=124 Identities=20% Similarity=0.202 Sum_probs=72.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 003451 281 TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYA 360 (819)
Q Consensus 281 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 360 (819)
....|+..+...++++.|.++|+++.+.. |+ ....++..+...++-.+|.+++++..+. .+.+...+......+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 33444555555666666666666666652 33 2334556666666666666666666554 2234555555555666
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003451 361 RDGLLEEAMELKTQMVEIGITPDV-FTYTTLLSGFEKAGKDESAMKVFEEMR 411 (819)
Q Consensus 361 ~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 411 (819)
+.++++.|+++.+++.+. .|+. .+|..|..+|...|+++.|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666666666666666654 3333 366666666666666666666665543
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.83 E-value=0.00055 Score=62.12 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHH-CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHH
Q 003451 680 FARAEDVLREILA-KGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP--DVITYNTFVASYAADSLFVEALDV 756 (819)
Q Consensus 680 ~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~ 756 (819)
+..+...+..+.+ .+..-....|..++..+...|++++|...|++.......+ ...++..++..+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444544432 2111124555666666777777777777777776532221 123667777777777777777777
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHH-------hcCCHh-------HHHHHHHHhhhcCCCCCH
Q 003451 757 VRYMIKQGCKP-NQNTYNSIVDGYC-------KLNQRY-------EAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 757 ~~~~~~~~~~p-~~~~~~~l~~~~~-------~~g~~~-------~A~~~~~~~~~~~p~~~~ 804 (819)
++++++. .| ....+..++..+. +.|+++ +|..+++++...+|.+..
T Consensus 95 ~~~Al~~--~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 95 YFQALER--NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred HHHHHHh--CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 7777763 34 3455555555555 666655 566666677777776543
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.82 E-value=0.003 Score=65.39 Aligned_cols=101 Identities=17% Similarity=0.208 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003451 385 FTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVF 464 (819)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (819)
+.+.+-+-.|...|.+++|.++-- .|+ ...-|..|.......=+++-|.+.+.++...
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iac----lgV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl---------------- 614 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIAC----LGV--TDTDWRELAMEALEALDFETARKAYIRVRDL---------------- 614 (1081)
T ss_pred ccccccchhhhhccchhhhhcccc----cce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhcc----------------
Confidence 344444556777788777765421 111 2223444444444444566666655554432
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003451 465 GQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKR 514 (819)
Q Consensus 465 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 514 (819)
.+-+.+.-++++.++|-.|+... +...++-.|++.+|.++|.+
T Consensus 615 ----~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 615 ----RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ----HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 22333445677788887777654 44566677888888887754
No 168
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.78 E-value=0.052 Score=54.25 Aligned_cols=134 Identities=13% Similarity=0.186 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 003451 665 TTYNTLMYMYSRSENFARAEDVLREILAKG-IKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITY-NTFVA 742 (819)
Q Consensus 665 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~ 742 (819)
.+|...+++-.+...++.|..+|-++.+.+ ..+++..+++++..++ .|+..-|.++|+-=... .||...| +....
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456666666667777777777777777666 4556677777776554 45667777777664442 3343333 34455
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCC
Q 003451 743 SYAADSLFVEALDVVRYMIKQGCKPN--QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 743 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
-+..-++-..|..+++..++. +..+ ..+|..++.--...|+...+..+-+++.+.-|..
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 556667777777777766543 2333 4567777776677777777777777777766643
No 169
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.78 E-value=4.7e-05 Score=47.23 Aligned_cols=32 Identities=41% Similarity=0.651 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003451 351 TYNSLISAYARDGLLEEAMELKTQMVEIGITP 382 (819)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 382 (819)
+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 170
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.78 E-value=0.0041 Score=65.71 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=7.7
Q ss_pred HHHHHHCCCCCCHHhHHH
Q 003451 302 FEEMKLAGFSPDKVTYNA 319 (819)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~ 319 (819)
|.+++. ++.|+..+-++
T Consensus 790 fse~vn-niKP~i~avt~ 806 (1102)
T KOG1924|consen 790 FSEQVN-NIKPDIVAVTA 806 (1102)
T ss_pred HHHHHh-hcChHHHHHHH
Confidence 334443 25555554443
No 171
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0014 Score=62.24 Aligned_cols=121 Identities=14% Similarity=0.076 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC---ChHHHHH
Q 003451 680 FARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADS---LFVEALD 755 (819)
Q Consensus 680 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g---~~~~A~~ 755 (819)
.+....-++.-+..+ +-|...|..|..+|...|+++.|...|.+..+. .| +...+..++.++..+. +..++..
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 334444445555543 347889999999999999999999999998883 33 4556777777765442 3678889
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 756 VVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 756 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
+++++++ .+| |......|+..+..+|++.+|...++.+++..|.+++-
T Consensus 215 ll~~al~--~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 215 LLRQALA--LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 9999988 456 67778888899999999999999999999998876553
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.74 E-value=0.001 Score=57.14 Aligned_cols=96 Identities=9% Similarity=-0.001 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003451 666 TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA 745 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 745 (819)
..-.+...+...|++++|.++|+-+...+. -+..-|..|.-++...|++++|+..|..+..... -|+..+-.++.++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 344556667788999999999998887532 2577778888888888999999999998887543 36678888888899
Q ss_pred hcCChHHHHHHHHHHHHc
Q 003451 746 ADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 746 ~~g~~~~A~~~~~~~~~~ 763 (819)
..|+.+.|.+.|+.++..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999998888763
No 173
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.72 E-value=0.0011 Score=65.36 Aligned_cols=129 Identities=12% Similarity=0.118 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 003451 631 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYM-YSRSENFARAEDVLREILAKGIKPDIISYNTVIFAY 709 (819)
Q Consensus 631 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 709 (819)
+|..++...-+.+..+.|..+|.+..+.+ ..+..+|...+.. |...++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444555555555555555665555332 1223333333333 22234444455666555543 333455555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 710 CRNGRMKEASRIFSEMRDSGLVPDV---ITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 710 ~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
...|+.+.|+.+|++.+.. +.++. ..|..++..=.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543 22111 2455555555555555555555555554
No 174
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.72 E-value=5.7e-05 Score=46.84 Aligned_cols=33 Identities=33% Similarity=0.622 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003451 209 YAYTSLITTYASNGRYREAVMVFKKMEEEGCKP 241 (819)
Q Consensus 209 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 241 (819)
.+|+.++++|++.|+++.|..+|+.|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666554
No 175
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.71 E-value=0.0012 Score=67.57 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=81.0
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHH
Q 003451 276 KPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLA--GFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYN 353 (819)
Q Consensus 276 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 353 (819)
..+......+++.+....+.+++..++-+.... ....-..|..++|+.|.+.|..++++.+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 345556666666666666777777777666654 222223445677777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003451 354 SLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKA 397 (819)
Q Consensus 354 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~ 397 (819)
.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777777666555666665555555443
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.71 E-value=8.3e-05 Score=58.10 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=51.8
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHH
Q 003451 677 SENFARAEDVLREILAKGIK-PDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEAL 754 (819)
Q Consensus 677 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~ 754 (819)
.|+++.|+.+++++.+.... ++...+..++.+|.+.|++++|..++++ .+ ..++ ......++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46778888888887765321 2344555577788888888888888877 32 2222 234445577778888888888
Q ss_pred HHHHHH
Q 003451 755 DVVRYM 760 (819)
Q Consensus 755 ~~~~~~ 760 (819)
++++++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 877653
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.71 E-value=0.00012 Score=54.57 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=45.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCC
Q 003451 745 AADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 745 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
...|++++|+.+++++.+. .| +..++..++.+|.+.|++++|..+++++...+|++
T Consensus 2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 4678888888888888874 45 77777788888888888888888888888888875
No 178
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.69 E-value=0.00099 Score=56.42 Aligned_cols=98 Identities=15% Similarity=0.069 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 003451 666 TYNTLMYMYSRSENFARAEDVLREILAKGIK--PDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV--PDVITYNTFV 741 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~l~ 741 (819)
++..++..+.+.|++++|.+.|+++++.... .....+..++.++.+.|++++|.+.++++...... .....+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4556677778888888888888888764211 11346666788888888888888888888764211 1235677788
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 003451 742 ASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 742 ~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
.++...|++++|...++++++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 8888888888888888888874
No 179
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.69 E-value=0.002 Score=64.04 Aligned_cols=125 Identities=12% Similarity=0.152 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHH----CCCCCC--HhHHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHH
Q 003451 679 NFARAEDVLREILA----KGIKPD--IISYNTVIFAYCRN-GRMKEASRIFSEMRDS----GLVPD--VITYNTFVASYA 745 (819)
Q Consensus 679 ~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----g~~p~--~~~~~~l~~~~~ 745 (819)
++++|.+.+++..+ .| .++ ...+..+...|... |++++|.+.|++..+. | .+. ..++..++..+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYA 166 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHH
Confidence 55566665555542 22 122 34555566677777 8999999999998873 2 111 236778888999
Q ss_pred hcCChHHHHHHHHHHHHcCCCC-----CH-HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 746 ADSLFVEALDVVRYMIKQGCKP-----NQ-NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 746 ~~g~~~~A~~~~~~~~~~~~~p-----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
+.|++++|++++++........ +. ..+...+-++...||...|.+.+++....+|.-...
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 9999999999999998643221 22 234455667778899999999999999998854333
No 180
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.68 E-value=0.0011 Score=67.93 Aligned_cols=88 Identities=10% Similarity=-0.056 Sum_probs=44.6
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH
Q 003451 638 IYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKE 717 (819)
Q Consensus 638 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 717 (819)
.+...|++++|++.++++++.. +.+...|..+..+|...|++++|+..++++++.. +.+...|..++.+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 3444555555555555555432 2334445555555555555555555555555432 1134445555555555555555
Q ss_pred HHHHHHHHHH
Q 003451 718 ASRIFSEMRD 727 (819)
Q Consensus 718 A~~~~~~~~~ 727 (819)
|...|+++++
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 181
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.67 E-value=0.069 Score=52.42 Aligned_cols=284 Identities=12% Similarity=0.058 Sum_probs=170.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH----HHccCCH
Q 003451 502 CGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAA--LARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHA----YANGREI 575 (819)
Q Consensus 502 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~----~~~~~~~ 575 (819)
.|+-..|.++-.+..+. +..|.....-++.+ -.-.|++++|.+-|+.|.+ |+.+-..=+.+ -.+.|+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccH
Confidence 35555665555443321 12233333334432 2346777777777777775 22222222222 2346777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CCCCHHH--HHHHHHHH--H-hcCChHHHH
Q 003451 576 DQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKG-FSPDIPT--LNAMISIY--G-RRQMVAKTN 649 (819)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~--~-~~~~~~~A~ 649 (819)
+.|..+.+.....- +.-.......+...|..|+++.|+++++.-.... +.++..- -..|+.+- . -..+...|.
T Consensus 171 eaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 77777777666543 3334556666777777888888887777655422 2223211 12222211 1 123456666
Q ss_pred HHHHHHhhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003451 650 EILHFMNDSGFTPSLTT-YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS 728 (819)
Q Consensus 650 ~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 728 (819)
..-.+..+ +.||..- --.-..++.+.|+..++-.+++.+-+.. |.+..+.. ..+.+.|+ .+..-+++..+.
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l--Y~~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL--YVRARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH--HHHhcCCC--cHHHHHHHHHHH
Confidence 66555554 3565543 2344577899999999999999999874 44444332 23455565 344444443331
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHhHHHHHHHHhhhcCCCC
Q 003451 729 -GLVPD-VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKL-NQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 729 -g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~ 802 (819)
.++|+ .+....++.+-...|++..|..--+.+.. ..|...+|..+.+.--.. ||..++..++-++.+.-.++
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 24554 45677788888899999999888888876 578888898888887654 99999999999988764333
No 182
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.65 E-value=0.0009 Score=53.82 Aligned_cols=94 Identities=16% Similarity=0.228 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003451 667 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA 746 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 746 (819)
+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. ..+...+..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445566666777777777777776642 2234566666777777777777777777776642 2233466677777777
Q ss_pred cCChHHHHHHHHHHHH
Q 003451 747 DSLFVEALDVVRYMIK 762 (819)
Q Consensus 747 ~g~~~~A~~~~~~~~~ 762 (819)
.|++++|...++...+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777777665
No 183
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.65 E-value=0.00077 Score=65.12 Aligned_cols=103 Identities=14% Similarity=0.034 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC-CHHHHHH
Q 003451 701 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV----ITYNTFVASYAADSLFVEALDVVRYMIKQG-CKP-NQNTYNS 774 (819)
Q Consensus 701 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p-~~~~~~~ 774 (819)
.|..-...+.+.|++++|...|+.+++. .|+. ..+..++.+|...|++++|+..|+++++.. -.| ....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444445668888888888888874 3332 467788888888999999999998888631 111 3566777
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 775 IVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 775 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
++.++...|+.++|+++++++++..|+.+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 7888888899999999999999888887544
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.64 E-value=0.0025 Score=52.78 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=25.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 707 FAYCRNGRMKEASRIFSEMRDSGLVPD--VITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 707 ~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.++-..|+.++|+.+|++..+.|+..+ ...+..++..+...|++++|+.++++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444555555555555544443322 12344444444455555555555554443
No 185
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.63 E-value=0.0033 Score=57.18 Aligned_cols=129 Identities=14% Similarity=0.070 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 003451 629 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS--LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVI 706 (819)
Q Consensus 629 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 706 (819)
...+..+...+...|++++|...+++..+....+. ...+..++.++.+.|++++|...+++.++.. +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44577788888999999999999999987532222 3578889999999999999999999999853 22577777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003451 707 FAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLN 783 (819)
Q Consensus 707 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 783 (819)
.++...|+...+..-++.... .+++|.++++++.+ ..|+. +..++..+...|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~--~~p~~--~~~~~~~~~~~~ 165 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIR--LAPNN--YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHh--hCchh--HHHHHHHHHhcC
Confidence 888888887776655544332 25677777777776 34433 434444444333
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.61 E-value=0.0039 Score=66.93 Aligned_cols=141 Identities=16% Similarity=0.120 Sum_probs=88.5
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 003451 626 SPDIPTLNAMISIYGR-----RQMVAKTNEILHFMNDSGFTPSL-TTYNTLMYMYSRS--------ENFARAEDVLREIL 691 (819)
Q Consensus 626 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~--------g~~~~A~~~~~~~~ 691 (819)
..+...|...+.+... .++.++|.++|++..+. .|+. ..|..+..++... ++...+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4455566555555322 22356677777777765 3443 3444433333221 12344444454444
Q ss_pred HCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003451 692 AKG-IKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQN 770 (819)
Q Consensus 692 ~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 770 (819)
... ...+...|..+...+...|++++|...++++.+ +.|+...|..++..+...|+.++|.+.++++.. +.|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCc
Confidence 321 223456777777667778889999999999888 456778888888888899999999999988887 566544
Q ss_pred HH
Q 003451 771 TY 772 (819)
Q Consensus 771 ~~ 772 (819)
+|
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 44
No 187
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.58 E-value=0.0014 Score=51.88 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC
Q 003451 212 TSLITTYASNGRYREAVMVFKKMEEEGC-KPTLITYNVILNVYGKMG 257 (819)
Q Consensus 212 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g 257 (819)
...|..+...+++.....+|+.+++.|+ .|++.+|+.++...++..
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~ 75 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRE 75 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcc
Confidence 3444455555777777777777777777 677777777777776654
No 188
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.57 E-value=0.0012 Score=65.13 Aligned_cols=127 Identities=6% Similarity=0.089 Sum_probs=50.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 003451 598 KTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGR-RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR 676 (819)
Q Consensus 598 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 676 (819)
..++....+.+..+.|..+|.+..+.+ ......|...+..-.+ .++.+.|..+|+...+. ++.+...|...+..+..
T Consensus 5 i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 5 IQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Confidence 333444444444444455554444321 1122223222222111 23333345555444443 23344444444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003451 677 SENFARAEDVLREILAKGIKPD---IISYNTVIFAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 677 ~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 727 (819)
.++.+.|..+|++.+.. +.++ ...|..++..-.+.|+++.+.++.+++.+
T Consensus 83 ~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 83 LNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp TT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555544432 1111 12444444444444444444444444444
No 189
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.56 E-value=0.0019 Score=58.63 Aligned_cols=95 Identities=14% Similarity=0.015 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 003451 664 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKP--DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VITYNTF 740 (819)
Q Consensus 664 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l 740 (819)
...|..++..+...|++++|...|++.+.....+ ...+|..+..++...|++++|.+.+++..+. .|+ ..++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 3456667777778888888888888887643222 2347778888888888888888888888763 332 3445555
Q ss_pred HHHHH-------hcCChHHHHHHHHHH
Q 003451 741 VASYA-------ADSLFVEALDVVRYM 760 (819)
Q Consensus 741 ~~~~~-------~~g~~~~A~~~~~~~ 760 (819)
+..+. ..|++++|+..+++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 55555 777877665555544
No 190
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.56 E-value=0.00038 Score=52.64 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=52.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHH
Q 003451 741 VASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 741 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
...|.+.+++++|+++++++++. .| +...|...+.++.+.|++++|...++++++.+|++....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 35678888999999999998884 45 677788888889999999999999999999888775543
No 191
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.55 E-value=0.0001 Score=44.49 Aligned_cols=26 Identities=38% Similarity=0.593 Sum_probs=11.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 003451 317 YNALLDVYGKCRRPKEAMQVLREMKI 342 (819)
Q Consensus 317 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 342 (819)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44444444444444444444444433
No 192
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.55 E-value=0.00091 Score=68.45 Aligned_cols=118 Identities=20% Similarity=0.137 Sum_probs=57.4
Q ss_pred hcHHHHHHhhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 003451 134 ADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTS 213 (819)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 213 (819)
.++-..+.........+.+..++..++.. .......+++.+++++.|...|..+.+..++..=...|+.||.++++.
T Consensus 67 ~dld~fvn~~~~~~~~d~~~~~L~k~R~s---~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 67 LDLDIFVNNVESKDDLDEVEDVLYKFRHS---PNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcC---cccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 33333444444334444555555555441 111222334445555555555555555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003451 214 LITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYG 254 (819)
Q Consensus 214 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 254 (819)
|++.+.+.|++..|..+...|...+...+..|+...+.++.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 55555555555555555555544433334444444444433
No 193
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.54 E-value=0.00011 Score=44.36 Aligned_cols=29 Identities=55% Similarity=0.785 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003451 351 TYNSLISAYARDGLLEEAMELKTQMVEIG 379 (819)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 379 (819)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777777665
No 194
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.47 E-value=0.026 Score=54.30 Aligned_cols=185 Identities=10% Similarity=0.048 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003451 593 HAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIP--TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTL 670 (819)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 670 (819)
+.......+..+...|++++|...|+.+.......... ..-.++.++.+.+++++|...+++..+....-...-+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 33333344555566777777777777777653222111 1234555666777777777777777765211111122222
Q ss_pred HHHHH--hcC---------------C---HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003451 671 MYMYS--RSE---------------N---FARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL 730 (819)
Q Consensus 671 ~~~~~--~~g---------------~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 730 (819)
+.+.+ ..+ | ..+|++.|+++++. -|+. .-..+|...+..+.+. +
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~-l 174 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR-L 174 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH-H
Confidence 22221 110 1 12344444444443 2221 2234444433333321 0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 003451 731 VPDVITYNTFVASYAADSLFVEALDVVRYMIKQG-CKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLS 796 (819)
Q Consensus 731 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 796 (819)
...-...+.-|.+.|.+..|+.-++.+++.- -.| .......++.+|.+.|..++|.++...+.
T Consensus 175 ---a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 175 ---AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ---HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0011245666889999999999999999741 111 45677788999999999999998876653
No 195
>PRK15331 chaperone protein SicA; Provisional
Probab=97.44 E-value=0.0075 Score=52.14 Aligned_cols=90 Identities=12% Similarity=0.062 Sum_probs=62.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003451 706 IFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQR 785 (819)
Q Consensus 706 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 785 (819)
..-+...|++++|..+|.-+...+.. +..-|..|+.++-..+++++|+..|..+...+ .-|+......+.+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 34455778888888888777764433 44556677777777788888888877776532 22555566777788888888
Q ss_pred hHHHHHHHHhhh
Q 003451 786 YEAITFVNNLSK 797 (819)
Q Consensus 786 ~~A~~~~~~~~~ 797 (819)
++|+..|+.+.+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888877777
No 196
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.42 E-value=0.022 Score=59.22 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=51.4
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCH
Q 003451 181 SMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPW 260 (819)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 260 (819)
..+-..|.+++|.++. +......-|..|...-..+=.++-|+..|-+.... ++
T Consensus 564 ~q~Ieag~f~ea~~ia------clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl---------------------~~ 616 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIA------CLGVTDTDWRELAMEALEALDFETARKAYIRVRDL---------------------RY 616 (1081)
T ss_pred hhhhhccchhhhhccc------ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhcc---------------------HH
Confidence 3444566666554432 22223334555555444444555555555554332 34
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003451 261 NKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEE 304 (819)
Q Consensus 261 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 304 (819)
-+...-+++++++|-.|+... +...|+-.|.+.||.++|.+
T Consensus 617 L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 617 LELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 444555677777777777653 33445667788888887743
No 197
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.39 E-value=0.0041 Score=49.33 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=40.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHhCCC--------hHHHHHHHHHHHHCCCCCCHhhHHHH
Q 003451 285 LISCCRRGSLHEEAAGVFEEMKLAGF-SPDKVTYNALLDVYGKCRR--------PKEAMQVLREMKINGCLPSIVTYNSL 355 (819)
Q Consensus 285 ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~~~g~~~~~~~~~~l 355 (819)
.|..|...+++.....+|+.+++.|+ -|...+|+.++...++..- +-+.+.+|+.|...+..|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34445555666666666666666666 5666666666665544321 22334444555544455555555555
Q ss_pred HHHH
Q 003451 356 ISAY 359 (819)
Q Consensus 356 i~~~ 359 (819)
+..+
T Consensus 111 l~~L 114 (120)
T PF08579_consen 111 LGSL 114 (120)
T ss_pred HHHH
Confidence 4444
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.043 Score=50.73 Aligned_cols=132 Identities=12% Similarity=0.128 Sum_probs=53.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHH
Q 003451 669 TLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS-----GLVPDVITYNTFVAS 743 (819)
Q Consensus 669 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~~~~~~~l~~~ 743 (819)
+++....-.|.+.-....+.++++...+.++.....|+..-.+.|+.+.|...|+...+. |+.-...+..+....
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 333444444444444444444444333333444444444444444444444444433331 111111222222233
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCC
Q 003451 744 YAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
|.-++++.+|...+.+....+ .-|+...+.-+-++.-.|+..+|++.++.+.+..|.
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred eecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 333444444444444444321 112333333333333444444455555544444443
No 199
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.35 E-value=0.13 Score=49.61 Aligned_cols=55 Identities=13% Similarity=0.177 Sum_probs=27.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003451 495 LISAYSRCGSFDQAMSIYKRMLEA--GVTPDLSTYNAVLAALARGGMWEQSEKIFAE 549 (819)
Q Consensus 495 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 549 (819)
+...|.+.|.+..|..-++.+++. +..........++.+|...|..++|..+...
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 344455555555555555555553 2222334444455555555555555554443
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.35 E-value=0.013 Score=48.60 Aligned_cols=92 Identities=17% Similarity=0.100 Sum_probs=64.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---H-HHHHHHHH
Q 003451 669 TLMYMYSRSENFARAEDVLREILAKGIKPD--IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD---V-ITYNTFVA 742 (819)
Q Consensus 669 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~-~~~~~l~~ 742 (819)
.+..++-..|+.++|+.+|++.+..|.... ...+..+...+...|++++|..++++.... .|+ . .....++.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHH
Confidence 345667778888888888888887765543 456667778888888888888888888764 233 1 22233445
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 003451 743 SYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 743 ~~~~~g~~~~A~~~~~~~~~ 762 (819)
++...|+.++|+.++-..+.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 67778888888888766653
No 201
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.31 E-value=0.0029 Score=56.97 Aligned_cols=103 Identities=23% Similarity=0.348 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 003451 207 DVYAYTSLITTYA-----SNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYT 281 (819)
Q Consensus 207 ~~~~~~~li~~~~-----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~ 281 (819)
+-.+|..+++.|. +.|..+=....+..|.+.|+..|..+|+.|++++=+.. +. -..+|+.+--
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~--fv-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGK--FV-PRNFFQAEFM--------- 113 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCC--cc-cccHHHHHhc---------
Confidence 3444444554444 33556666667778888888888888888888876532 11 1111111110
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCC
Q 003451 282 FNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRR 329 (819)
Q Consensus 282 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 329 (819)
-.-.+.+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 114 --------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 --------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred --------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1113455566777777777777777777777777665554
No 202
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.30 E-value=0.001 Score=48.76 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=36.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 705 VIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 705 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
++..+.+.|++++|.+.|+++++.. | +...+..++.++...|++++|+.+++++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666777777777777776643 3 344666677777777777777777777765
No 203
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.26 E-value=0.0012 Score=49.09 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=41.6
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 003451 698 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADS-LFVEALDVVRYMIK 762 (819)
Q Consensus 698 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 762 (819)
++..|..++..+...|++++|+..|++.++. .| +...|..++.++...| ++++|++.++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3456666667777777777777777777663 33 3346666777777777 57777777777665
No 204
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.24 E-value=0.0027 Score=62.06 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=29.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCCHHHHHHH
Q 003451 216 TTYASNGRYREAVMVFKKMEEEGCKPTLI----TYNVILNVYGKMGMPWNKIMAL 266 (819)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~g~~~~~a~~~ 266 (819)
..+|+.|+.+.-+.+|+...+.|.. |.. .|..|.++|...+ ++++|++.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~-DY~kAl~y 77 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLK-DYEKALKY 77 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHh-hHHHHHhh
Confidence 4578888888888888888877643 322 3344444444444 45555443
No 205
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.021 Score=54.50 Aligned_cols=100 Identities=10% Similarity=0.027 Sum_probs=74.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHH
Q 003451 661 TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR---MKEASRIFSEMRDSGLVP-DVIT 736 (819)
Q Consensus 661 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p-~~~~ 736 (819)
+-|...|..|..+|...|+++.|..-|....+.. .++...+..+..++..+.+ ..++..+|+++++. .| |..+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHH
Confidence 5677788888888888888888888888888752 3456777777766654432 66788888888874 44 4456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003451 737 YNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 737 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
...|+..+...|++.+|...++.|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 667777888888888888888888875
No 206
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.15 E-value=0.012 Score=53.18 Aligned_cols=102 Identities=19% Similarity=0.343 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHH
Q 003451 383 DVFTYTTLLSGFEKA-----GKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTW 457 (819)
Q Consensus 383 d~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 457 (819)
|..+|..++..|.+. |..+=....+..|.+-|+..|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~---------- 113 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM---------- 113 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc----------
Confidence 555666666655532 4455555555555555655566666665555433 2211 0111111100
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003451 458 NTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCG 503 (819)
Q Consensus 458 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 503 (819)
-.-.+.+-|++++++|...|+.||..++..+++.+.+.+
T Consensus 114 -------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 -------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred -------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 001123446667777777777777777777777665544
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.14 Score=47.43 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=29.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003451 673 MYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 673 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 727 (819)
.|.-++++..|...+.+++..+ ..++...|.-+-++.-.|+..+|++.++.|..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444556666666666665543 22444444444444455666666666666665
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.12 E-value=0.075 Score=53.50 Aligned_cols=167 Identities=12% Similarity=0.077 Sum_probs=82.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 003451 635 MISIYGRRQMVAKTNEILHFMNDSG---FTPSLTTYNTLMYMYSR---SENFARAEDVLREILAKGIKPDIISYNTVIFA 708 (819)
Q Consensus 635 l~~~~~~~~~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 708 (819)
++-.|....+++.-+++.+.+...- +.-...+-..++.++.+ .|+.++|++++..+....-.++..+|..++..
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3334555555666666666555431 11112222234444555 66666666666664433334555566555544
Q ss_pred HHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh----HHHHHHH----HHHHHcCCC-CCH-
Q 003451 709 YCR---------NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLF----VEALDVV----RYMIKQGCK-PNQ- 769 (819)
Q Consensus 709 ~~~---------~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~----~~A~~~~----~~~~~~~~~-p~~- 769 (819)
|.. ....++|...|.+.-+ +.||...=.+++..+...|.- .+..++. ..+.++|.. +..
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 431 1125666666666655 334443222333334344431 1222222 112233322 222
Q ss_pred -HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCC
Q 003451 770 -NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 770 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 803 (819)
-.+..++.++.-.|+.++|...++++.++.|+.-
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 2333667777778888888888888887776553
No 209
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.11 E-value=0.028 Score=54.42 Aligned_cols=167 Identities=10% Similarity=-0.003 Sum_probs=112.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---C--CCHhH
Q 003451 631 TLNAMISIYGRRQMVAKTNEILHFMNDS-GFTP---SLTTYNTLMYMYSRSENFARAEDVLREILAKGI---K--PDIIS 701 (819)
Q Consensus 631 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~--p~~~~ 701 (819)
.|..+..++.+..++.+++.+-+.-... |..| ......++..++.-.+.++++++.|+.+.+... . ....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4455555555555555555554443322 2222 123445677888888899999999998874311 1 12467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCC
Q 003451 702 YNTVIFAYCRNGRMKEASRIFSEMRDS----GLVPDV------ITYNTFVASYAADSLFVEALDVVRYMIK----QGCKP 767 (819)
Q Consensus 702 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p 767 (819)
+..|...|.+..++++|.-+..++.+. ++. |. .....+..++...|+.-+|.+..+++.+ .|-++
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 888889999999999998887777652 222 22 2445667778889999888888888754 34333
Q ss_pred -CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 003451 768 -NQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 768 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
-......+++.|...|+.+.|..-|+.+-..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 3455668899999999999999998887544
No 210
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.11 E-value=0.36 Score=48.34 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 003451 353 NSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNR 432 (819)
Q Consensus 353 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 432 (819)
+.-|.-+...|+...|.++..+.. -||..-|-..+.+++..++|++-.++-.. + -.+.-|..++..|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-----KsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-K-----KSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-----CCCCChHHHHHHHHHC
Confidence 333444455555555555443331 23555555555555555555554443221 1 1223344555555555
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003451 433 GNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGV 476 (819)
Q Consensus 433 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 476 (819)
|...+|..++.++. +..-+..|.+.|++.+|.+.
T Consensus 251 ~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 251 GNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHH
Confidence 55555555554411 13344455555555555444
No 211
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.65 Score=50.79 Aligned_cols=180 Identities=13% Similarity=0.118 Sum_probs=99.5
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003451 136 LLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLI 215 (819)
Q Consensus 136 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 215 (819)
+..-+..+.+...++.|+.+-..-.. +............+-|.+.|++++|...|-+-+.. ..| ..+|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~------d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi 404 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL------DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVI 404 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHH
Confidence 33334444444555556555443211 11112334445556666778888887777655432 111 2345
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 003451 216 TTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLH 295 (819)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 295 (819)
.-|....+..+-..+++.+.+.|.. +...-..|+++|.+.+ +.++..++...-. .|.. ..-+...+..|.+.+-+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlk-d~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLK-DVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhc-chHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 5556666666667777777777765 5555567788888877 6666665555433 2211 11234556666666777
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHH
Q 003451 296 EEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREM 340 (819)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 340 (819)
++|..+-..... .......+ +-..|++++|++.+..+
T Consensus 480 ~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 776665544332 23333333 33567788888887765
No 212
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.08 E-value=0.002 Score=47.77 Aligned_cols=51 Identities=14% Similarity=0.217 Sum_probs=29.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 711 RNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 711 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+.|++++|.++|+++...... +...+..++.+|.+.|++++|..+++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666666666666653211 445555666666666666666666666665
No 213
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.011 Score=58.60 Aligned_cols=69 Identities=14% Similarity=0.083 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 736 TYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
++.+++.++.+.+++.+|+....+.++.+ .+|...+..-+.+|...|+++.|+..|+++++++|.|..+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~ 327 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAA 327 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHH
Confidence 45555556666666666666666666532 2255555556666666666666666666666666666333
No 214
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.99 E-value=0.019 Score=55.67 Aligned_cols=102 Identities=15% Similarity=0.091 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHH
Q 003451 665 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGL--VPDVITYN 738 (819)
Q Consensus 665 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p~~~~~~ 738 (819)
..|......+.+.|++++|...|+.+++.. |+ ...+..++.+|...|++++|...|+.+.+.-. ......+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 345555555566788999999999888752 33 35777888888999999999999999887311 11234666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003451 739 TFVASYAADSLFVEALDVVRYMIKQGCKPNQN 770 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 770 (819)
.++.++...|++++|..+++++++. .|+..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 7778888889999999999998874 45443
No 215
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.98 E-value=0.011 Score=49.98 Aligned_cols=57 Identities=12% Similarity=0.081 Sum_probs=32.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 706 IFAYCRNGRMKEASRIFSEMRDSGL--VPDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 706 ~~~~~~~g~~~~A~~~~~~~~~~g~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+....+.|++++|.+.|+.+...-. .-...+-..++.+|.+.|++++|+..+++.++
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444556666666666666665311 11223455666666666666666666666666
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.98 E-value=0.002 Score=49.41 Aligned_cols=63 Identities=22% Similarity=0.331 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCC---C-HHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 003451 736 TYNTFVASYAADSLFVEALDVVRYMIKQ--GCKP---N-QNTYNSIVDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
+++.++..|...|++++|++.++++++. -..+ + ..++..++.+|...|++++|+++++++.++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5666667777777777777777766542 0111 1 355667777777777777777777776653
No 217
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.93 E-value=0.022 Score=53.73 Aligned_cols=106 Identities=16% Similarity=0.138 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCC-CHHHHHHHH
Q 003451 701 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLV--PDVITYNTFVASYAADSLFVEALDVVRYMIKQ-GCKP-NQNTYNSIV 776 (819)
Q Consensus 701 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~l~ 776 (819)
.|+.-+ .+.+.|++.+|...|...++.... -....+..|+.+++..|++++|..+|..+.+. +-.| -+..+..|+
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455444 355678899999988888875221 12246778889999999999999999888863 2223 357888899
Q ss_pred HHHHhcCCHhHHHHHHHHhhhcCCCCCHHHH
Q 003451 777 DGYCKLNQRYEAITFVNNLSKLDPHVTKELE 807 (819)
Q Consensus 777 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 807 (819)
.+..+.|+.++|..+|+++.+.-|..+....
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 9999999999999999999999888876643
No 218
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.92 E-value=0.11 Score=48.63 Aligned_cols=57 Identities=18% Similarity=-0.037 Sum_probs=31.9
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCC--CCHHhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 003451 287 SCCRRGSLHEEAAGVFEEMKLAGFS--PDKVTYNALLDVYGKCRRPKEAMQVLREMKIN 343 (819)
Q Consensus 287 ~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 343 (819)
..+...|++.+|.+.|+.+...... --..+.-.++.++.+.|++++|...+++..+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3355566777777777776654211 11223445566666777777777777776554
No 219
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.022 Score=56.57 Aligned_cols=100 Identities=14% Similarity=0.056 Sum_probs=77.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003451 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 777 (819)
..++..+..+|.+.+++.+|++...+.++.+ .++...+..-+.++...|+++.|+..|+++++ +.| |..+-..|+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence 3567788889999999999999999999863 34667888889999999999999999999999 688 4455445555
Q ss_pred HHHhcCCHhH-HHHHHHHhhhcCCC
Q 003451 778 GYCKLNQRYE-AITFVNNLSKLDPH 801 (819)
Q Consensus 778 ~~~~~g~~~~-A~~~~~~~~~~~p~ 801 (819)
+-.+..++.+ ..++|.+|...-..
T Consensus 334 l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccc
Confidence 5444444443 47888888876553
No 220
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.90 E-value=0.46 Score=46.00 Aligned_cols=203 Identities=14% Similarity=0.051 Sum_probs=121.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH-
Q 003451 595 VLLKTLILVYSKSDLLMDTERAFLELKKK-GFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMY- 672 (819)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~- 672 (819)
.........+...+.+..+...+...... ........+..+...+...+.+..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444455555556666655555555431 112234445555555566666777777777666543222 122222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 003451 673 MYSRSENFARAEDVLREILAKGI--KPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSL 749 (819)
Q Consensus 673 ~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 749 (819)
.+...|+++.|...+++...... ......+......+...++.++|...+.+..... .. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 67777788888888877755211 0123334444444666777888888888877631 22 24567777777777788
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCC
Q 003451 750 FVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 750 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
+++|...+..+.+. .|+ ...+..+...+...|..+++...+++..+..|.
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888888888763 343 445555666666666788888888888877775
No 221
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.76 E-value=0.31 Score=45.61 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=35.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHhHHHH
Q 003451 739 TFVASYAADSLFVEALDVVRYMIKQGCKPN----QNTYNSIVDGYCKLNQRYEAIT 790 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 790 (819)
.++..|.+.|.+..|+.-++.+++. -|+ ......++.+|.+.|..+.|..
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 4567788999999999999998875 343 3556678888888888875443
No 222
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.72 E-value=0.72 Score=45.69 Aligned_cols=53 Identities=21% Similarity=0.213 Sum_probs=33.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003451 499 YSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKG 552 (819)
Q Consensus 499 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 552 (819)
.-+.|+.+.|.++-++..+.-.. -...+...+...+..|+|+.|+++.+.-+.
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 34566777777766666554222 235566667777777777777777766543
No 223
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=1.3 Score=48.04 Aligned_cols=114 Identities=16% Similarity=0.085 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003451 662 PSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFV 741 (819)
Q Consensus 662 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 741 (819)
...-+.+--+.-+...|+..+|.++-.+.. -||...|..-+.+++..+++++-+++-+... ++..|.-++
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV 751 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV 751 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence 333455566667778899999988877663 4688899999999999999999888776643 256778889
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 003451 742 ASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNN 794 (819)
Q Consensus 742 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 794 (819)
.+|.+.|+.+||.+++-+.-. .. -...+|.+.|++.+|.+..-+
T Consensus 752 e~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHH
Confidence 999999999999998876632 11 466778888898888775433
No 224
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=1.3 Score=47.96 Aligned_cols=111 Identities=14% Similarity=0.219 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003451 455 VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAAL 534 (819)
Q Consensus 455 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 534 (819)
.+.+.-+.-+...|+..+|.++-.+.. .||...|..-+.+++..+++++-+++-+... .+.-|..+..+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 344445555666666666666554432 3466666666677777777766555543322 244566667777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003451 535 ARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEE 584 (819)
Q Consensus 535 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 584 (819)
.+.|+.++|.+++.+.... . ....+|...|++.+|.++.-+
T Consensus 755 ~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 7777777777777665432 1 345566667777776665443
No 225
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.66 E-value=0.85 Score=45.76 Aligned_cols=110 Identities=14% Similarity=0.142 Sum_probs=75.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003451 421 TFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYS 500 (819)
Q Consensus 421 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 500 (819)
+.+..+.-+...|+...|.++..+.. .||..-|...+.+++..+++++-..+... .-.+..|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44455566667788888887777664 57778888888888888888876665432 113466777888888
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003451 501 RCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEM 550 (819)
Q Consensus 501 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 550 (819)
+.|...+|..+...+. +..-+..|.+.|++.+|.+.-.+.
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 8888888887776621 244566777888888887765443
No 226
>PRK15331 chaperone protein SicA; Provisional
Probab=96.65 E-value=0.051 Score=47.14 Aligned_cols=90 Identities=8% Similarity=-0.071 Sum_probs=61.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003451 671 MYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLF 750 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 750 (819)
..-+...|++++|..+|+-+...+. -+..-|..|..++...|++++|+..|......+. -|+..+...+.++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 3445667788888888877765442 2566667777777777778888887777665432 2444566667777788888
Q ss_pred HHHHHHHHHHHH
Q 003451 751 VEALDVVRYMIK 762 (819)
Q Consensus 751 ~~A~~~~~~~~~ 762 (819)
+.|+..++..++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888887777776
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.62 E-value=0.0095 Score=45.59 Aligned_cols=63 Identities=27% Similarity=0.320 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 700 ISYNTVIFAYCRNGRMKEASRIFSEMRDS----GLV-PD-VITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 700 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.+|+.+...|...|++++|++.|++..+. |-. |+ ..++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666677777777777777777776642 111 11 23666777777777777777777777654
No 228
>PRK11906 transcriptional regulator; Provisional
Probab=96.62 E-value=0.077 Score=54.26 Aligned_cols=150 Identities=12% Similarity=0.056 Sum_probs=111.1
Q ss_pred ChHHHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 003451 644 MVAKTNEILHFMNDS-GFTPS-LTTYNTLMYMYSR---------SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN 712 (819)
Q Consensus 644 ~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 712 (819)
..+.|..+|.+.... .+.|+ ...|..+..++.. ..+..+|.+..++..+.+ .-|......+..++...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 567888899998822 23444 4556666665432 234667888888888875 34788888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHhHH
Q 003451 713 GRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN---QNTYNSIVDGYCKLNQRYEA 788 (819)
Q Consensus 713 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A 788 (819)
|+++.|..+|++... +.||. .+|...++.+...|+.++|.+.+++..+ +.|. ..+....++.|+.. ..++|
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCC-chhhh
Confidence 999999999999988 56655 4788888889999999999999999887 5663 45555666677766 56888
Q ss_pred HHHHHHhhhcC
Q 003451 789 ITFVNNLSKLD 799 (819)
Q Consensus 789 ~~~~~~~~~~~ 799 (819)
++++-+-.+..
T Consensus 427 ~~~~~~~~~~~ 437 (458)
T PRK11906 427 IKLYYKETESE 437 (458)
T ss_pred HHHHhhccccc
Confidence 88887765543
No 229
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.61 E-value=0.014 Score=43.96 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=34.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 707 FAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 707 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
..|.+.+++++|.++++++++.+.. +...+...+.++...|++++|...++++++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3456666667777766666663211 344555666666667777777777776666
No 230
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.57 E-value=0.098 Score=44.31 Aligned_cols=119 Identities=10% Similarity=0.077 Sum_probs=73.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003451 667 YNTLMYMYSRSENFARAEDVLREILAKGIKP---DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 743 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 743 (819)
+-.-.....+.|++++|.+.|+.+... .+. ....-..++.+|.+.|++++|...+++.++........-|..+..+
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 334455567889999999999998865 222 2456667889999999999999999999984332122334444444
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCH
Q 003451 744 YAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
++.-...+ ..+..+. +..-|. +...+|..-|+++++.-|++..
T Consensus 92 L~~~~~~~---~~~~~~~--~~drD~-------------~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 92 LSYYEQDE---GSLQSFF--RSDRDP-------------TPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHhh---hHHhhhc--ccccCc-------------HHHHHHHHHHHHHHHHCcCChh
Confidence 33322211 2222222 122222 2334777788888888777644
No 231
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.56 E-value=0.24 Score=50.89 Aligned_cols=103 Identities=12% Similarity=0.171 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH
Q 003451 703 NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQ-NTYNSIVDGYC 780 (819)
Q Consensus 703 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 780 (819)
..+..++.+.|+.+||++.+++|.+....-|. .+...|+.++...+.+.++..++.+--+.....+. ..|...+-...
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 34555556666677777766666653211112 24556666666666777766666665432211222 22333222222
Q ss_pred hcCC---------------HhHHHHHHHHhhhcCCCCCHH
Q 003451 781 KLNQ---------------RYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 781 ~~g~---------------~~~A~~~~~~~~~~~p~~~~~ 805 (819)
..|+ -..|.+.+.++.+.+|..++.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 2222 134678899999999988654
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.54 E-value=0.012 Score=59.90 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=76.6
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003451 698 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI----TYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYN 773 (819)
Q Consensus 698 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 773 (819)
+...++.+..+|.+.|++++|+..|++.++ +.|+.. +|.+++.+|...|++++|+..++++++.+ .+ .|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHH
Confidence 478899999999999999999999999998 566643 58999999999999999999999999842 12 222
Q ss_pred HHHH--HHHhcCCHhHHHHHHHHhhhcCCC--CCHHHHHHHHHH
Q 003451 774 SIVD--GYCKLNQRYEAITFVNNLSKLDPH--VTKELECKLSDR 813 (819)
Q Consensus 774 ~l~~--~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~~l~~~ 813 (819)
.+.. .+....+..+..++++.+.+.+-. .+.....+|++.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~~~g~~~~~~~kL~~E 191 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGEDIGSSFRRDLKLISE 191 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCCccCCchhhHHHHHHH
Confidence 1111 011223344667777777666542 333355555554
No 233
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.47 E-value=1.5 Score=46.37 Aligned_cols=186 Identities=11% Similarity=-0.001 Sum_probs=109.4
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003451 557 PNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMI 636 (819)
Q Consensus 557 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 636 (819)
++..+|...+.--...|+.+...-+++..+-.- ..-..++-..+......|+..-|..++....+-..+....+-..-.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 345677777777778888888888888776421 2234455555555555688888887777766543332222222222
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCHhHHHHHH-----H
Q 003451 637 SIYGRRQMVAKTNEILHFMNDSGFTPSLTT-YNTLMYMYSRSENFARAE---DVLREILAKGIKPDIISYNTVI-----F 707 (819)
Q Consensus 637 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~~~l~-----~ 707 (819)
......|++..|..+++.+.+.- |+... -..-+....+.|+.+.+. +++.....- .-+......+. .
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARL 449 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHH
Confidence 23345778999999999888763 54432 223344556777877777 333333221 11222222222 1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003451 708 AYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADS 748 (819)
Q Consensus 708 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 748 (819)
.+.-.++.+.|..++.++.+. ..++...|..++......+
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 233457788899999888874 3445556667776655544
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.46 E-value=0.18 Score=54.01 Aligned_cols=165 Identities=17% Similarity=0.127 Sum_probs=99.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH------HHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHhH
Q 003451 632 LNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLT------TYNTLMYMYS----RSENFARAEDVLREILAKGIKPDIIS 701 (819)
Q Consensus 632 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~ 701 (819)
+..++...+-.|+-+.+++.+....+.+---.+. .|..++..++ ...+.+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3344445555666666666666655432111111 1222222222 245778888888888875 355444
Q ss_pred HHH-HHHHHHhcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-HH
Q 003451 702 YNT-VIFAYCRNGRMKEASRIFSEMRDSG--L-VPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNS-IV 776 (819)
Q Consensus 702 ~~~-l~~~~~~~g~~~~A~~~~~~~~~~g--~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~ 776 (819)
|.. -.+.+...|+.++|++.|+++.... . ......+.-+++++...++|++|.+.+.++.+.. .-+..+|.. .+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 433 3466777888888888888766421 1 1123466778888888889999999998888742 223444443 34
Q ss_pred HHHHhcCCH-------hHHHHHHHHhhhcC
Q 003451 777 DGYCKLNQR-------YEAITFVNNLSKLD 799 (819)
Q Consensus 777 ~~~~~~g~~-------~~A~~~~~~~~~~~ 799 (819)
-++...|+. ++|.++++++....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 444567777 78888888776553
No 235
>PRK11906 transcriptional regulator; Provisional
Probab=96.45 E-value=0.23 Score=50.95 Aligned_cols=148 Identities=11% Similarity=0.082 Sum_probs=104.5
Q ss_pred CHHHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHHh---------cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 003451 609 LLMDTERAFLELKK-KGFSPD-IPTLNAMISIYGR---------RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRS 677 (819)
Q Consensus 609 ~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 677 (819)
..+.|..+|.+... ..+.|+ ...|..+..++.. .....+|.++.++..+.+ +-|......++.+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 46778888988882 222444 4455555544421 234567788888888876 67888888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHH
Q 003451 678 ENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI---TYNTFVASYAADSLFVEA 753 (819)
Q Consensus 678 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---~~~~l~~~~~~~g~~~~A 753 (819)
++++.|...|++.... .|| ...|......+.-.|+.++|.+.+++..+ +.|-.. .....+..|+..+ .++|
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNN 426 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhh
Confidence 8999999999999985 455 67777777778889999999999999877 455432 2333344566654 6888
Q ss_pred HHHHHHHHH
Q 003451 754 LDVVRYMIK 762 (819)
Q Consensus 754 ~~~~~~~~~ 762 (819)
++++-+-.+
T Consensus 427 ~~~~~~~~~ 435 (458)
T PRK11906 427 IKLYYKETE 435 (458)
T ss_pred HHHHhhccc
Confidence 887765543
No 236
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.44 E-value=0.4 Score=46.82 Aligned_cols=128 Identities=9% Similarity=0.060 Sum_probs=60.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCCCHHHHH-
Q 003451 599 TLILVYSKSDLLMDTERAFLELKKKGF-----SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS----GFTPSLTTYN- 668 (819)
Q Consensus 599 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~~~~~~- 668 (819)
.+..++...+.++.+.+.|+...+... ......+..|...|.+..++++|.-...+..+. ++..-...|.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 344555555555666655555543111 111234555666666666666665544443321 2111111122
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003451 669 ----TLMYMYSRSENFARAEDVLREILA----KGIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMR 726 (819)
Q Consensus 669 ----~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 726 (819)
.+.-++...|.+-.|.+.-++..+ .|-.+ .......+.+.|...|+.+.|..-|+.+.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 223344555655555555554432 22111 12334455566667777777666666544
No 237
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.42 E-value=0.96 Score=45.83 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003451 733 DVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 733 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
|.-.+..++.+..-.|++++|...+++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3334557777888889999999999999874
No 238
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.39 E-value=1.7 Score=46.03 Aligned_cols=186 Identities=11% Similarity=-0.047 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 003451 594 AVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYM 673 (819)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 673 (819)
...+...++.-...|+.+.+.-.|+...-. +..-...|-..+.-....|+.+-|..++....+..++....+--.-...
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 455666777778889999888888876532 1123445555566666668888888888777665444333333222333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCH--HHHHHHHHH-HHh
Q 003451 674 YSRSENFARAEDVLREILAKGIKPDI-ISYNTVIFAYCRNGRMKEAS---RIFSEMRDSGLVPDV--ITYNTFVAS-YAA 746 (819)
Q Consensus 674 ~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~g~~p~~--~~~~~l~~~-~~~ 746 (819)
.-..|++..|..+++.+.+. + |+. ..-..-+....+.|+.+.+. .++.........+.. ..+...++. +.-
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 45578999999999999876 3 553 22233445667888888888 444433332111111 122223322 334
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003451 747 DSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLN 783 (819)
Q Consensus 747 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 783 (819)
.++.+.|..++.++.+. ..++...|..+++.+...+
T Consensus 454 ~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 454 REDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 57789999999999884 3447777888887776554
No 239
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.78 Score=42.08 Aligned_cols=96 Identities=14% Similarity=0.126 Sum_probs=46.9
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHC--CCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-----
Q 003451 670 LMYMYSRS-ENFARAEDVLREILAK--GIKPD---IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYN----- 738 (819)
Q Consensus 670 l~~~~~~~-g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~----- 738 (819)
+...|... .++++|+..|++.-+. |-..+ ...+.-+...-...+++.+|+++|+++....+..+..-|.
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 33444333 5666777777766532 11111 1222333344456677888888888877654433222221
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003451 739 -TFVASYAADSLFVEALDVVRYMIKQGCKP 767 (819)
Q Consensus 739 -~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 767 (819)
..+-++.-..+.-.+...+++..+ ..|
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~--~dP 226 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQE--LDP 226 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHh--cCC
Confidence 111122223455555566666665 345
No 240
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.34 E-value=0.072 Score=54.41 Aligned_cols=66 Identities=11% Similarity=0.017 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003451 661 TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDI----ISYNTVIFAYCRNGRMKEASRIFSEMRDS 728 (819)
Q Consensus 661 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 728 (819)
+.+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778999999999999999999999999985 4553 46999999999999999999999999984
No 241
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.98 Score=49.48 Aligned_cols=179 Identities=12% Similarity=0.044 Sum_probs=102.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 003451 281 TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKV--TYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISA 358 (819)
Q Consensus 281 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 358 (819)
....-+..+++...++-|..+.+. .+..++.. ......+-+.+.|++++|...|-+-... ..| ..+|.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 344566777777788877776533 33222221 2222234455778888888877665433 222 335666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 003451 359 YARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEM 438 (819)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 438 (819)
|.....+.+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|.- ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 77777777788888888888766 44445567888888888887776666544 2211 11133445555566666666
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003451 439 MKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 480 (819)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 480 (819)
..+-.+... .... +--.+-..|++++|++.++.+
T Consensus 483 ~~LA~k~~~-----he~v---l~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWV---LDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHH---HHHHHHHhcCHHHHHHHHhcC
Confidence 655544332 1111 222233456666666666554
No 242
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.25 E-value=0.0097 Score=39.24 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 771 TYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 771 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
++..++..|...|++++|++.++++++.+|++...
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a 37 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEA 37 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 55667777777777777777777777777776544
No 243
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.52 Score=43.50 Aligned_cols=202 Identities=15% Similarity=0.108 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003451 173 GSVIAVLISMLGKEGKVSVAASLLHGLHKD-----GFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYN 247 (819)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 247 (819)
.+.|.....++...++++.|..-+....+- .+.+-...|...+...-...++.++..+ |+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl---------------~e 95 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDL---------------YE 95 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHH---------------HH
Confidence 345555566666677777777666554421 1111122233333223333333333333 33
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC---CC--CCCHHhHHHHHH
Q 003451 248 VILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLA---GF--SPDKVTYNALLD 322 (819)
Q Consensus 248 ~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~ 322 (819)
--...|...| ..+.|...+++.-+ ..+..+.++|++++++.... +- ..-...|...-.
T Consensus 96 KAs~lY~E~G-spdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 96 KASELYVECG-SPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHHHHHHhC-CcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 4445566666 56655555554433 11223334444444443221 00 001112333334
Q ss_pred HHHhCCChHHHHHHHHHHHHC----CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHH
Q 003451 323 VYGKCRRPKEAMQVLREMKIN----GCLPS-IVTYNSLISAYARDGLLEEAMELKTQMVEIG---ITPDVFTYTTLLSGF 394 (819)
Q Consensus 323 ~~~~~g~~~~A~~~~~~~~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~pd~~~~~~l~~~~ 394 (819)
++.+...+++|-..+.+-... .-.++ -..|...|-.|.-..++..|.+.+++--+.+ -.-|..+...|+.+|
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 455555555554444332110 00111 1223344444555556666666666533321 112334555555554
Q ss_pred HhcCCHHHHHHHH
Q 003451 395 EKAGKDESAMKVF 407 (819)
Q Consensus 395 ~~~g~~~~A~~~~ 407 (819)
..|+.+++.+++
T Consensus 239 -d~gD~E~~~kvl 250 (308)
T KOG1585|consen 239 -DEGDIEEIKKVL 250 (308)
T ss_pred -ccCCHHHHHHHH
Confidence 345555554443
No 244
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.20 E-value=0.084 Score=46.44 Aligned_cols=114 Identities=18% Similarity=0.278 Sum_probs=72.5
Q ss_pred HHhcCCHHHHHHHHHHHHHC--C-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003451 674 YSRSENFARAEDVLREILAK--G-IKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLF 750 (819)
Q Consensus 674 ~~~~g~~~~A~~~~~~~~~~--~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 750 (819)
....|+.+.+...++++... | +-++... ..-.......++++. ..+...++..+...|++
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~-------~~~~~~l~~~~~~~~~~ 78 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY-------LDALERLAEALLEAGDY 78 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH-------HHHHHHHHHHHHHTT-H
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccCH
Confidence 34567777888888777753 1 1112111 111222333333332 12566777888899999
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhh-----hcCCCCCHHH
Q 003451 751 VEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLS-----KLDPHVTKEL 806 (819)
Q Consensus 751 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~p~~~~~~ 806 (819)
++|+.++++++. ..| |...|..++.+|...|+..+|.+.|+++. ++|..+++.+
T Consensus 79 ~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 79 EEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 999999999998 467 78899999999999999999999999863 4566666554
No 245
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.05 E-value=0.015 Score=35.71 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCC
Q 003451 770 NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 770 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
..|..++..+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467788888888888888888888888888864
No 246
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.95 E-value=0.53 Score=41.99 Aligned_cols=96 Identities=9% Similarity=-0.026 Sum_probs=69.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003451 705 VIFAYCRNGRMKEASRIFSEMRDSGLVPDV----ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYC 780 (819)
Q Consensus 705 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 780 (819)
+...+...|++++|...++..+.. .-|. .+-..++......|.+|+|+..+....+.++ .......-++++.
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 346677888888888888877652 1122 2333567778888999999998888766432 2344556788899
Q ss_pred hcCCHhHHHHHHHHhhhcCCCCCH
Q 003451 781 KLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 781 ~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
..|+.++|+.-|+++++.++++..
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 171 AKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred HcCchHHHHHHHHHHHHccCChHH
Confidence 999999999999999998755433
No 247
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.90 E-value=0.67 Score=40.64 Aligned_cols=59 Identities=25% Similarity=0.417 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003451 352 YNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMR 411 (819)
Q Consensus 352 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 411 (819)
...++..+...|++++|.++...+.... +.|...|..+|.+|...|+..+|.++|+.+.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3444555555666666666666665542 2345556666666666666666666665543
No 248
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=1.2 Score=42.74 Aligned_cols=122 Identities=9% Similarity=0.019 Sum_probs=68.2
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH
Q 003451 638 IYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKE 717 (819)
Q Consensus 638 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 717 (819)
.....|+..+|..+|+...... +-+....-.++.+|...|+.+.|..++..+....-.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3455667777777777666542 233445556677777777777777777766533111111222222334444444444
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003451 718 ASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 718 A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
...+-.+.-. .| |...-..++..+...|+.++|.+.+-.+++.
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444444332 34 5555666777777777777777776666654
No 249
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.85 E-value=4.8 Score=46.38 Aligned_cols=108 Identities=17% Similarity=0.205 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHH
Q 003451 492 FNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELT--YSSLLHAY 569 (819)
Q Consensus 492 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~l~~~~ 569 (819)
|....+.+...+.+++|.-.|+..-+. ..-+.+|..+|+|.+|..+..++... -+... -..|..-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence 334444444555556555555443221 12344566667777777666665421 12111 13444555
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003451 570 ANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLE 619 (819)
Q Consensus 570 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 619 (819)
...++.-+|-++..+.... ....+..+++...+++|.++...
T Consensus 1010 ~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 5566666665555554432 12233445555556655554433
No 250
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.76 E-value=0.017 Score=35.44 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCC
Q 003451 770 NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 770 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
.+|..++.+|...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888775
No 251
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.69 E-value=0.1 Score=46.25 Aligned_cols=91 Identities=21% Similarity=0.304 Sum_probs=54.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh
Q 003451 709 YCRNGRMKEASRIFSEMRDSGLVPD------VITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCK 781 (819)
Q Consensus 709 ~~~~g~~~~A~~~~~~~~~~g~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 781 (819)
+.+.|++++|..-|.++++. .|. .+.|..-+.++.+.+.++.|++-..++++. .| ....+..-+.+|-+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYEK 180 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHHh
Confidence 44556666666666666653 221 134555556666677777777777777663 34 33334444556666
Q ss_pred cCCHhHHHHHHHHhhhcCCCCC
Q 003451 782 LNQRYEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 782 ~g~~~~A~~~~~~~~~~~p~~~ 803 (819)
...+++|++-|+++++.+|...
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchH
Confidence 6677777777777777777654
No 252
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.69 E-value=0.19 Score=41.14 Aligned_cols=91 Identities=13% Similarity=0.022 Sum_probs=44.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHhcCC
Q 003451 673 MYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS-GLVPD--VITYNTFVASYAADSL 749 (819)
Q Consensus 673 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~--~~~~~~l~~~~~~~g~ 749 (819)
+....|+++.|++.|.+.+.. .+.....||.-..++.-+|+.++|++-+++..+. |-.-. ...|-.-+..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 345555666666666655543 2224555555555555556666665555555542 21100 0123333334444555
Q ss_pred hHHHHHHHHHHHHcC
Q 003451 750 FVEALDVVRYMIKQG 764 (819)
Q Consensus 750 ~~~A~~~~~~~~~~~ 764 (819)
-+.|..=|+.+.+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 555555555555443
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.26 Score=47.51 Aligned_cols=154 Identities=11% Similarity=0.041 Sum_probs=91.5
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCH
Q 003451 605 SKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSL----TTYNTLMYMYSRSENF 680 (819)
Q Consensus 605 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~ 680 (819)
...|...+|-..++++++.- +.|..++..--.+|...|+.+.-...++++... ..+|. +.-..+..++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34567777777777776642 446666666667777777777777777776643 12333 2223344455677777
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003451 681 ARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS---GLVPDVITYNTFVASYAADSLFVEALDVV 757 (819)
Q Consensus 681 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 757 (819)
++|++.-++..+.+ +.|...-.++...+...|+.+++.++..+-... +--.-...|...+-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 77777777776643 235555556666666777777777766553321 00001123444444555667777777777
Q ss_pred HHHH
Q 003451 758 RYMI 761 (819)
Q Consensus 758 ~~~~ 761 (819)
.+=+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7643
No 254
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.62 E-value=3 Score=42.34 Aligned_cols=129 Identities=16% Similarity=0.119 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 003451 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAG-VTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTY-SSLLH 567 (819)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~l~~ 567 (819)
..|...++.-.+..-++.|..+|.++.+.+ +.+++..+++++..++ .|+...|..+|+--... .||...| ...+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 345556666666666667777777766665 4456666666666554 45556666666654332 2333322 33444
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003451 568 AYANGREIDQMLALSEEIYSGIIEPH--AVLLKTLILVYSKSDLLMDTERAFLELKK 622 (819)
Q Consensus 568 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 622 (819)
-+...++-+.|..+|+..+..- ..+ ...|..++..-..-|++..+..+-+.+.+
T Consensus 475 fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 4555666666666666544321 111 23344444444444555444444444433
No 255
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.58 E-value=6.1 Score=45.61 Aligned_cols=110 Identities=15% Similarity=0.111 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHH
Q 003451 632 LNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDI--ISYNTVIFAY 709 (819)
Q Consensus 632 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~ 709 (819)
|...+..+.....+++|.-+|+..-+ ..-.+.+|..+|++.+|+.+..++..- -+. .+-..|+.-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence 34444445556667777666655322 123456677778888888877766431 122 2225667777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003451 710 CRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMI 761 (819)
Q Consensus 710 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 761 (819)
..+++.-+|.+++.+... . ....+..||+...|++|..+.....
T Consensus 1010 ~e~~kh~eAa~il~e~~s---d-----~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLS---D-----PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHcccchhHHHHHHHHhc---C-----HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 888888888888877654 1 1223445677777888877666554
No 256
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.50 E-value=3.7 Score=42.58 Aligned_cols=137 Identities=15% Similarity=0.043 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------
Q 003451 663 SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKP---DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP------- 732 (819)
Q Consensus 663 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p------- 732 (819)
...++..++..+.+.|+++.|...+..+...+... .+......+..+...|+.++|...+++..+..+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34567777777888888888888888777643111 23344444566667788888888777776621110
Q ss_pred -------------------CH-------HHHHHHHHHHHhc------CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 003451 733 -------------------DV-------ITYNTFVASYAAD------SLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGY 779 (819)
Q Consensus 733 -------------------~~-------~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 779 (819)
+. .++..++...... +..+++...++.+.+ +.| ....|..++..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK--LDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH--hChhHHHHHHHHHHHH
Confidence 01 1233333333344 667788888888887 455 445666666655
Q ss_pred HhcCC-----------------HhHHHHHHHHhhhcCCC
Q 003451 780 CKLNQ-----------------RYEAITFVNNLSKLDPH 801 (819)
Q Consensus 780 ~~~g~-----------------~~~A~~~~~~~~~~~p~ 801 (819)
.+.-+ ...|++.|-+++..++.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 303 DKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 43211 12356666666666666
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=1.1 Score=43.00 Aligned_cols=140 Identities=12% Similarity=0.099 Sum_probs=98.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003451 671 MYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLF 750 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 750 (819)
.......|++.+|...|+....... -+...-..++.+|...|+.+.|..++..+...--.........-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3445778999999999999987632 246677788899999999999999999876432111222222344556666666
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH-HHHHHHHHH
Q 003451 751 VEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE-LECKLSDRI 814 (819)
Q Consensus 751 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~l~~~l 814 (819)
.+...+.+++-+ .| |...-..++..|...|+.++|.+.+=.+++.+...... .-..|++.+
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f 282 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELF 282 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHH
Confidence 666666666665 56 77777799999999999999999888888775543222 334455443
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.42 E-value=1.1 Score=48.17 Aligned_cols=25 Identities=20% Similarity=-0.009 Sum_probs=15.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHh
Q 003451 563 SSLLHAYANGREIDQMLALSEEIYS 587 (819)
Q Consensus 563 ~~l~~~~~~~~~~~~a~~~~~~~~~ 587 (819)
..++....-.|+-+.+++.+.+..+
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~ 216 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASK 216 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhc
Confidence 3444445556777777777666554
No 259
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.39 E-value=2.7 Score=40.35 Aligned_cols=200 Identities=13% Similarity=0.039 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 003451 560 LTYSSLLHAYANGREIDQMLALSEEIYSG-IIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMIS- 637 (819)
Q Consensus 560 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 637 (819)
..+......+...+.+..+...+...... ........+......+...+.+..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444445555555555555555555432 223334444555555555566666666666666533222 111222222
Q ss_pred HHHhcCChHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCC
Q 003451 638 IYGRRQMVAKTNEILHFMNDSGF--TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKP-DIISYNTVIFAYCRNGR 714 (819)
Q Consensus 638 ~~~~~~~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 714 (819)
.+...|+++.|...+........ ......+......+...++.+.+...+.+..... .. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56777888888888877755211 0123334444444667788888888888888752 22 35677777788888888
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003451 715 MKEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 715 ~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
+++|...+...... .|+ ...+..+...+...+.++++...+.+..+.
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88898888888873 333 445555666666677788999888888873
No 260
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.31 E-value=0.36 Score=45.75 Aligned_cols=97 Identities=19% Similarity=0.166 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHH
Q 003451 666 TYNTLMYMYSRSENFARAEDVLREILAKGIK--PDIISYNTVIFAYCRNGRMKEASRIFSEMRDS-GLVP-DVITYNTFV 741 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p-~~~~~~~l~ 741 (819)
.|+.-+. +.+.|++..|..-|...++.... -....+..|..++...|++++|..+|..+.+. +-.| -+..+..++
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4554444 45677899999999888876321 11456667888888999999999998888774 1122 235788888
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 003451 742 ASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 742 ~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
.+..+.|+.++|..+++++++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8888999999999999998874
No 261
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.31 E-value=1.6 Score=38.04 Aligned_cols=123 Identities=9% Similarity=0.079 Sum_probs=72.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCh
Q 003451 675 SRSENFARAEDVLREILAKGIKPDI-ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI---TYNTFVASYAADSLF 750 (819)
Q Consensus 675 ~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---~~~~l~~~~~~~g~~ 750 (819)
...+..++|+.-|.++.+.|...-+ ...........+.|+..+|...|+++-.....|-.. .-..-+..+...|-|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 4556667777777777766544211 112223344566777777777777776643333322 112233345667777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 003451 751 VEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 751 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
++....++-+...+-.-....-..|+.+-++.|++.+|..+|+.+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 77777766665433222344455677777788888888888887766
No 262
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.25 E-value=0.058 Score=35.51 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 003451 736 TYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIV 776 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 776 (819)
++..++..|...|++++|+++++++++. .| |...|..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHHHHHhh
Confidence 5667777777777777777777777773 45 555555554
No 263
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.22 E-value=1.4 Score=38.23 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=21.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc
Q 003451 319 ALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARD 362 (819)
Q Consensus 319 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 362 (819)
.++..+...+.......+++.+...+. .+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 344444444555555555555554432 3444555555555543
No 264
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.22 E-value=6.3 Score=43.53 Aligned_cols=182 Identities=12% Similarity=0.013 Sum_probs=96.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003451 608 DLLMDTERAFLELKKKGFSPDIPTLNAMISIYG----RRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARA 683 (819)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 683 (819)
.+...|.++|....+.| .+..+-.+..+|. -..+...|...+.+..+.| .|........+..+.. +.++.+
T Consensus 342 ~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~ 416 (552)
T KOG1550|consen 342 RDYRRAFEYYSLAAKAG---HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTA 416 (552)
T ss_pred ccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHH
Confidence 34566666666666665 2233333333332 2345677777777777766 3332222233333333 566666
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHH-HHH---Hh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChH
Q 003451 684 EDVLREILAKGIKPDIISYNTVI-FAY---CR----NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD----SLFV 751 (819)
Q Consensus 684 ~~~~~~~~~~~~~p~~~~~~~l~-~~~---~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~----g~~~ 751 (819)
.-.+..+.+.|.+ ...+-..++ ... .. ..+.+.+...+.+....| +......+...|..- .+++
T Consensus 417 ~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~ 492 (552)
T KOG1550|consen 417 LALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPE 492 (552)
T ss_pred HHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChH
Confidence 6665555554432 111111111 110 11 124556666666666544 445556666655443 3478
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHhHHHHHHHHhhhcCCCCC
Q 003451 752 EALDVVRYMIKQGCKPNQNTYNSIVDGYC----KLNQRYEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 752 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~p~~~ 803 (819)
.|...+..+.+.+ ......++..+- ... +..|.++++++.+.+....
T Consensus 493 ~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~~~~~~ 543 (552)
T KOG1550|consen 493 KAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEEDSRAY 543 (552)
T ss_pred HHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhcCchhh
Confidence 8888888887754 444445555542 223 6888888888887765543
No 265
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.16 E-value=0.29 Score=41.15 Aligned_cols=48 Identities=15% Similarity=0.148 Sum_probs=21.5
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Q 003451 346 LPSIVTYNSLISAYARDGLLEEAMELKTQMVEI-GITPDVFTYTTLLSG 393 (819)
Q Consensus 346 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~~~~~l~~~ 393 (819)
.|+..+..+++.+|+.+|++..|+++.+...+. +++-+..+|..|++-
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344444444444444444444444444444332 333344444444443
No 266
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.00 E-value=1.3 Score=38.40 Aligned_cols=43 Identities=7% Similarity=0.163 Sum_probs=20.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003451 213 SLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKM 256 (819)
Q Consensus 213 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 256 (819)
.++..+...+.......+++.+...+. .+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 344444444455555555555544432 3444555555555543
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.96 E-value=0.63 Score=45.01 Aligned_cols=155 Identities=5% Similarity=-0.052 Sum_probs=115.4
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCCh
Q 003451 570 ANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTL----NAMISIYGRRQMV 645 (819)
Q Consensus 570 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~ 645 (819)
-..|+..+|...++++++. .+.+...++..-.++.-.|+...-...++++... ..+|...| ..+..++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3477888888889999875 4777888888888999999999988888888754 23444333 3344455789999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 003451 646 AKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK---GIKPDIISYNTVIFAYCRNGRMKEASRIF 722 (819)
Q Consensus 646 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 722 (819)
++|.+.-++..+.+ +.|...-.++...+...|+..++.++..+-... +.-.-...|....-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999988765 556667777888888899999999988776532 11111344555666677889999999999
Q ss_pred HHHHH
Q 003451 723 SEMRD 727 (819)
Q Consensus 723 ~~~~~ 727 (819)
+.-+-
T Consensus 271 D~ei~ 275 (491)
T KOG2610|consen 271 DREIW 275 (491)
T ss_pred HHHHH
Confidence 88554
No 268
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.84 E-value=0.44 Score=40.10 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC-
Q 003451 385 FTYTTLLSGFEKAGKDESAMKVFEEMR---------------SAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKC- 448 (819)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 448 (819)
.++.+++.++++.|+.+....+++..- .....|+..+..+++.+|+..|++..|+++++.+.+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344445555555555555544444322 1123455556666666666666666666666555443
Q ss_pred CCCCCHHHHHHHHH
Q 003451 449 NCKPDIVTWNTLLA 462 (819)
Q Consensus 449 ~~~~~~~~~~~l~~ 462 (819)
+++.+...|..|++
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 33334445554443
No 269
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.81 E-value=3.7 Score=38.81 Aligned_cols=63 Identities=14% Similarity=0.213 Sum_probs=44.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCC
Q 003451 739 TFVASYAADSLFVEALDVVRYMIKQGCKPN---QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
.++.-|.+.|.+..|..-++.|++. .+-. ...+..+..+|.+.|-.++|.+.-+-+..--|+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 3456688899999999999999885 2222 3456677788889999999888755444444443
No 270
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.78 E-value=0.13 Score=49.58 Aligned_cols=92 Identities=18% Similarity=0.237 Sum_probs=48.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHh
Q 003451 708 AYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRY 786 (819)
Q Consensus 708 ~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 786 (819)
-|.++|.+++|++.|.+.+. ..| +.+++.+-+.+|.+..++..|..=+..++..+ ..-...|..-+.+-...|...
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 35566666666666665554 333 55555555556666666655555555554421 111223333333434456666
Q ss_pred HHHHHHHHhhhcCCCC
Q 003451 787 EAITFVNNLSKLDPHV 802 (819)
Q Consensus 787 ~A~~~~~~~~~~~p~~ 802 (819)
||.+-++.++++.|++
T Consensus 183 EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHhHHHHHhhCccc
Confidence 6666666666666664
No 271
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.78 E-value=0.032 Score=34.10 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=22.7
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHH
Q 003451 757 VRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAI 789 (819)
Q Consensus 757 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 789 (819)
++++++ +.| |...|..++..|...|++++|+
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 456666 456 6777888888888888888775
No 272
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.76 E-value=0.84 Score=48.14 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=84.2
Q ss_pred HHhCCChHHHHHHHH--HHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003451 324 YGKCRRPKEAMQVLR--EMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDE 401 (819)
Q Consensus 324 ~~~~g~~~~A~~~~~--~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~ 401 (819)
..-.|+++++.++.+ ++... + ...-.+.++..+-+.|..+.|+++-.+ ..+ -.....+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~-i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~~---rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPN-I--PKDQGQSIARFLEKKGYPELALQFVTD---------PDH---RFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhccc-C--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------hHH---HhHHHHhcCCHH
Confidence 344567777666554 11111 1 233466777777777888888776443 221 134455677877
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003451 402 SAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMK 481 (819)
Q Consensus 402 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 481 (819)
.|.++.++. .+...|..|.+...++|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+...
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 777764432 3566788888888888888888887776442 4556666677777766666666555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003451 482 RAGFIPERDTFNTLISAYSRCGSFDQAMSIYK 513 (819)
Q Consensus 482 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 513 (819)
..|- ++....++...|+.++..+++.
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 5432 3333444445566666655544
No 273
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.74 E-value=0.72 Score=37.89 Aligned_cols=91 Identities=13% Similarity=0.011 Sum_probs=47.6
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhcCC
Q 003451 638 IYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD---IISYNTVIFAYCRNGR 714 (819)
Q Consensus 638 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~ 714 (819)
+....|+++.|++.|.+.+.. .+.....||.-..++.-+|+.++|++-+++.++..-.-. -..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 345556666666666665553 234445566666666666666666666666554311111 1223333344555566
Q ss_pred HHHHHHHHHHHHHCC
Q 003451 715 MKEASRIFSEMRDSG 729 (819)
Q Consensus 715 ~~~A~~~~~~~~~~g 729 (819)
.+.|+.-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666555543
No 274
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.57 E-value=0.34 Score=45.52 Aligned_cols=98 Identities=27% Similarity=0.372 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003451 223 RYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVF 302 (819)
Q Consensus 223 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 302 (819)
..+--...+..|.+.|+..|..+|+.|++.+-|... .|... |..+.--| -.+-+-+.+++
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf-----------------iP~nv-fQ~~F~HY--P~QQ~C~I~vL 146 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF-----------------IPQNV-FQKVFLHY--PQQQNCAIKVL 146 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc-----------------ccHHH-HHHHHhhC--chhhhHHHHHH
Confidence 344455566789999999999999999998876441 12111 11111111 12345577888
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhCCCh-HHHHHHHHHH
Q 003451 303 EEMKLAGFSPDKVTYNALLDVYGKCRRP-KEAMQVLREM 340 (819)
Q Consensus 303 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 340 (819)
++|...|+.||..+-..|++++++.+-. .+..+++-.|
T Consensus 147 eqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 147 EQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 8888888888888888888888877653 3344444444
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.52 E-value=0.034 Score=34.63 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhh
Q 003451 772 YNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 772 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
|..|+..|.+.|++++|++++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666666666666443
No 276
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=8.8 Score=41.84 Aligned_cols=156 Identities=15% Similarity=0.094 Sum_probs=71.0
Q ss_pred HHHHHcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHcC
Q 003451 216 TTYASNGRYREAVMVFKKME-EEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMK-SAGVKPD-SYTFNTLISCCRRG 292 (819)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~-~~~~~p~-~~~~~~ll~~~~~~ 292 (819)
..|...|.+++|+.+--... ...+.++...+.+++.-|...= .+.+.+.++.-. ..++.+. ....+.++..|...
T Consensus 67 KVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~y--i~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d 144 (929)
T KOG2062|consen 67 KVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMY--IETASETYKNPEQKSPIDQRLRDIVERMIQKCLDD 144 (929)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHH--HHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhh
Confidence 56777788888877655443 3345566666666665554321 334444443222 1122221 11334444445544
Q ss_pred CCHHHHHHHH---------HH-HHHCCCCCCHHhHHHHHHHHHhCCC-hHHHHHHHHHHHHC---CCCCCHhhHHHHHHH
Q 003451 293 SLHEEAAGVF---------EE-MKLAGFSPDKVTYNALLDVYGKCRR-PKEAMQVLREMKIN---GCLPSIVTYNSLISA 358 (819)
Q Consensus 293 g~~~~a~~~~---------~~-~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~---g~~~~~~~~~~li~~ 358 (819)
+++..|..+. ++ +.+..- +....+.++..+....+ -+--.++++.+.+. +..|| |..+..+
T Consensus 145 ~e~~~aiGia~E~~rld~ie~Ail~~d~--~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PD---y~~vc~c 219 (929)
T KOG2062|consen 145 NEYKQAIGIAFETRRLDIIEEAILKSDS--VIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPD---YFSVCQC 219 (929)
T ss_pred hHHHHHHhHHhhhhhHHHHHHHhccccc--cchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCC---eeeeeee
Confidence 4444443332 22 111111 11122333333322222 22222333333221 23344 3445666
Q ss_pred HHHcCCHHHHHHHHHHHHHc
Q 003451 359 YARDGLLEEAMELKTQMVEI 378 (819)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~ 378 (819)
|....+.+.+.++++++.+.
T Consensus 220 ~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 220 YVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eEEcCCHHHHHHHHHHHHhc
Confidence 66777777777777777763
No 277
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.51 E-value=4.1 Score=37.93 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHccCCHHHHH
Q 003451 527 YNAVLAALARGGMWEQSEKIFAEMKGGR---CKPNELTYSSLLHAYANGREIDQML 579 (819)
Q Consensus 527 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~ 579 (819)
|...|-.+.-..++..|.+.+++--+.+ -.-+..+...|+.+| ..|+.+++.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 3333444444556666666666533322 122333444455544 334444433
No 278
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.45 E-value=4.5 Score=38.23 Aligned_cols=53 Identities=17% Similarity=0.012 Sum_probs=24.6
Q ss_pred cCCCHHHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 003451 291 RGSLHEEAAGVFEEMKLAGF--SPDKVTYNALLDVYGKCRRPKEAMQVLREMKIN 343 (819)
Q Consensus 291 ~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 343 (819)
+.|++++|...|+.+..... +-...+.-.++.++.+.+++++|+..+++....
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 34555555555555554311 111223333444455555555555555554443
No 279
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.41 E-value=3.2 Score=43.05 Aligned_cols=63 Identities=16% Similarity=0.097 Sum_probs=41.5
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003451 315 VTYNALLDVYGKCRRPKEAMQVLREMKINGCL-PSIVTYNSLISAYARDGLLEEAMELKTQMVE 377 (819)
Q Consensus 315 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 377 (819)
.+-..|..+..+.|+.++|.+.+++|.+.... .+.-....|+.++...+.+.++..++.+..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33345666666778888888888887654222 1233556677777778888888777777654
No 280
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.30 E-value=2.6 Score=34.92 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=74.1
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 003451 641 RRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASR 720 (819)
Q Consensus 641 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 720 (819)
-.|.+++..++..+.... .+..-+|-++--....-+-+-..+.++.+-+. .|. ..+|+......
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHHH
Confidence 356666667666666653 23333443333333333333444444433221 121 12233333333
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 003451 721 IFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 721 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 800 (819)
.+-.+ .-+.......+..+..+|+-|.-.++++.+.+. -++++.....++.+|.+.|+..+|-++++++-+.+.
T Consensus 78 C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33221 113344555566778888888888888888753 478889999999999999999999999999988775
Q ss_pred C
Q 003451 801 H 801 (819)
Q Consensus 801 ~ 801 (819)
.
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
No 281
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.25 E-value=12 Score=42.14 Aligned_cols=204 Identities=11% Similarity=0.061 Sum_probs=112.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHH-HHhcCChHHHHHHHHHHhhC----CCCCCHHH
Q 003451 599 TLILVYSKSDLLMDTERAFLELKKKGFSPDI-------PTLNAMISI-YGRRQMVAKTNEILHFMNDS----GFTPSLTT 666 (819)
Q Consensus 599 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~----~~~p~~~~ 666 (819)
.-+.......++.+|..+..++...-..|+. ..++.+-.. ....|++++|.++.+..... -..+....
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 3344555667777887777776543222221 123333322 24578889988888777653 12334456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh---HHHHH--HHHHHhcCC--HHHHHHHHHHHHHC--CCCCC----
Q 003451 667 YNTLMYMYSRSENFARAEDVLREILAKGIKPDII---SYNTV--IFAYCRNGR--MKEASRIFSEMRDS--GLVPD---- 733 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l--~~~~~~~g~--~~~A~~~~~~~~~~--g~~p~---- 733 (819)
+..+..+..-.|++++|..+.++..+..-.-+.. .|..+ ...+..+|. +.+....+...... +-.|-
T Consensus 500 ~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~ 579 (894)
T COG2909 500 LSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFL 579 (894)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhH
Confidence 6777888888999999999888776431122322 22222 244566773 33444444444332 11111
Q ss_pred HHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCC-CH-HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCC
Q 003451 734 VITYNTFVASYAA-DSLFVEALDVVRYMIKQGCKP-NQ-NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 734 ~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
.-++..+.+++.+ .+.-.+|...++--......| +. ..+..|+..+...|+.++|...++++..+.-..
T Consensus 580 ~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 580 VRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 1244455555544 222333333344333322223 11 223477888889999999999999887664443
No 282
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.05 E-value=3 Score=34.61 Aligned_cols=64 Identities=17% Similarity=0.322 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003451 456 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGV 520 (819)
Q Consensus 456 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 520 (819)
..+..+..+...|..++-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.++.+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3344455555556666655555555432 234555555566666666666666666666555544
No 283
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.01 E-value=0.094 Score=32.04 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCC
Q 003451 770 NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 770 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
.+|..++..|...|++++|.+.++++.+.+|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35777888888888888888888888888773
No 284
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.92 E-value=7.3 Score=38.61 Aligned_cols=16 Identities=6% Similarity=-0.132 Sum_probs=9.7
Q ss_pred HHhcCChHHHHHHHHH
Q 003451 464 FGQNGMDSEVSGVFKE 479 (819)
Q Consensus 464 ~~~~g~~~~a~~~~~~ 479 (819)
+.+.+++++|.+.|+-
T Consensus 256 ~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHhhcCHHHHHHHHHH
Confidence 3456666666666654
No 285
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.83 E-value=0.78 Score=48.36 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=52.5
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003451 324 YGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESA 403 (819)
Q Consensus 324 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A 403 (819)
..+.|+++.|.++.++. .+...|..|.....++|+++-|.+.|.+..+ +..|+-.|...|+.+.-
T Consensus 328 Al~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 34566666666655433 2455666666666666666666666665432 34455555666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003451 404 MKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDE 444 (819)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 444 (819)
.++.+.....|- ++....++.-.|++++..+++.+
T Consensus 393 ~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 393 SKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 666555555431 23333334445566655555544
No 286
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.80 E-value=4.3 Score=35.55 Aligned_cols=123 Identities=14% Similarity=0.094 Sum_probs=62.4
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHH--HHHHhcCChH
Q 003451 571 NGREIDQMLALSEEIYSGIIEPHAVL-LKTLILVYSKSDLLMDTERAFLELKKKGFSPDIP-TLNAMI--SIYGRRQMVA 646 (819)
Q Consensus 571 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~--~~~~~~~~~~ 646 (819)
+.++.++|+..|.++.+.|....+.+ .........+.|+...|...|+++-.....|-.. -...|- ..+..+|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 34444455555555544443333222 1223344455566666666666665433233222 111121 1234566777
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003451 647 KTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK 693 (819)
Q Consensus 647 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 693 (819)
+.....+-+...+-+-....-..|..+-.+.|++.+|.+.|..+...
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 77666666655442223333455666667777777777777777653
No 287
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.78 E-value=7.8 Score=38.49 Aligned_cols=48 Identities=19% Similarity=0.365 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHHC
Q 003451 366 EEAMELKTQMVEIGITPDVFTYTTLLSGFEK--A----GKDESAMKVFEEMRSA 413 (819)
Q Consensus 366 ~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~ 413 (819)
++.+.+++.|.+.|+.-+..+|.+....... . .....|..+|+.|++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666665555442222221 1 1234566666666654
No 288
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.73 E-value=8.3 Score=38.64 Aligned_cols=158 Identities=13% Similarity=0.089 Sum_probs=94.8
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-----
Q 003451 643 QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR----SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG----- 713 (819)
Q Consensus 643 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----- 713 (819)
.+..+|.+.+..+.+.|. ......+...|.. ..|..+|..+++++.+.|..+.......+...|...+
T Consensus 91 ~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 91 RDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred ccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 345666666666555542 2222234444433 3377777777777777664322222334444443321
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----
Q 003451 714 --RMKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLN---- 783 (819)
Q Consensus 714 --~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---- 783 (819)
+...|...+.++...+ +......++..|.. ..+.++|..+++++.+.|. ......+. .+...|
T Consensus 168 ~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~ 240 (292)
T COG0790 168 AYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVK 240 (292)
T ss_pred cHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCch
Confidence 2336788888877765 44455555555543 3367888888888888764 44444454 555555
Q ss_pred -----------CHhHHHHHHHHhhhcCCCCCHHHHHHH
Q 003451 784 -----------QRYEAITFVNNLSKLDPHVTKELECKL 810 (819)
Q Consensus 784 -----------~~~~A~~~~~~~~~~~p~~~~~~~~~l 810 (819)
+...|..++......++.........+
T Consensus 241 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 278 (292)
T COG0790 241 KAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRAL 278 (292)
T ss_pred hhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 888889999999888888777766643
No 289
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.70 E-value=10 Score=39.52 Aligned_cols=165 Identities=11% Similarity=0.135 Sum_probs=100.2
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003451 591 EPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTL 670 (819)
Q Consensus 591 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 670 (819)
..+...+-+++..+...-.++-.+.+..++...| .+...+..++..|... ..++-..+|+++.+..+ .|.+.-..+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 4555666677777777777777777777777764 3566677777777777 46777778887777642 233333444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 003451 671 MYMYSRSENFARAEDVLREILAKGIKPD------IISYNTVIFAYCRNGRMKEASRIFSEMRDS-GLVPDVITYNTFVAS 743 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~ 743 (819)
+.-|. .++.+++..+|.++... +-|. ...|..+... -..+.+....+..++.+. |..--.+.+..+-.-
T Consensus 139 a~~yE-kik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 139 ADKYE-KIKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHH-HhchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 44444 47778888888877754 2221 2344444431 134566666666666553 332223344444455
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 003451 744 YAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~~ 763 (819)
|....++++|+++++-.++.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 215 YSENENWTEAIRILKHILEH 234 (711)
T ss_pred hccccCHHHHHHHHHHHhhh
Confidence 66677777777777777664
No 290
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.59 E-value=1.6 Score=36.34 Aligned_cols=74 Identities=11% Similarity=0.198 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 731 VPDVITYNTFVASYAADSL---FVEALDVVRYMIKQGCKP--NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 731 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
.++..+-..+++++.++.+ ..+.+.+++...+. -.| +......|+-++++.|++++++++++.+++.+|++...
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 5566677788888887654 56777888888762 233 34455567778889999999999999999999888766
No 291
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.49 E-value=8.8 Score=38.15 Aligned_cols=126 Identities=15% Similarity=0.269 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh--CC----ChHHHHHHHHHHHHCCC---CCCHhhHHHHHHHHHHcCC--
Q 003451 296 EEAAGVFEEMKLAGFSPDKVTYNALLDVYGK--CR----RPKEAMQVLREMKINGC---LPSIVTYNSLISAYARDGL-- 364 (819)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~-- 364 (819)
++...+++.|.+.|+..+..+|-+....... .. ....|..+|+.|.+... .++...+..|+.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445566677777776666555443222222 11 23456666777666532 1233334444332 2222
Q ss_pred --HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhc-CC--HHHHHHHHHHHHHCCCCCCHHHHH
Q 003451 365 --LEEAMELKTQMVEIGITPDVF-TYTTLLSGFEKA-GK--DESAMKVFEEMRSAGCKPNICTFN 423 (819)
Q Consensus 365 --~~~A~~~~~~m~~~g~~pd~~-~~~~l~~~~~~~-g~--~~~A~~~~~~~~~~~~~~~~~~~~ 423 (819)
.+.+..+|+.+.+.|+..+.. -+.+-+-+++.. .. ...+.++++.+.+.|++.....|.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccccc
Confidence 244555556666555543322 122212222211 11 234555555666665554444443
No 292
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.38 E-value=1.2 Score=40.33 Aligned_cols=94 Identities=18% Similarity=0.183 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHH
Q 003451 351 TYNSLISAYARDGLLEEAMELKTQMVEIGITPDVF--TYTTLLSGFEKAGKDESAMKVFEEMRSA---GCKPN----ICT 421 (819)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~ 421 (819)
.+..+...|++.|+.++|++.|.++.+....+... .+..+|+.....|++..+...+.++... |...+ ..+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 34445555555555555555555555543332222 3444555555556666655555554432 11111 122
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHh
Q 003451 422 FNALIKMHGNRGNFVEMMKVFDEIN 446 (819)
Q Consensus 422 ~~~l~~~~~~~g~~~~A~~~~~~~~ 446 (819)
|..+. +...+++..|-+.|-+..
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHccC
Confidence 22222 224567777777766554
No 293
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.34 E-value=11 Score=38.94 Aligned_cols=108 Identities=13% Similarity=0.103 Sum_probs=79.6
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-------
Q 003451 698 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP---DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP------- 767 (819)
Q Consensus 698 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------- 767 (819)
...+|..++..+.+.|+++.|...+.++...+... ++.+....+..+...|+..+|+..++..++..+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 46788899999999999999999999998743211 34455566777889999999999998887611111
Q ss_pred -------------------C-------HHHHHHHHHHHHhc------CCHhHHHHHHHHhhhcCCCCCHH
Q 003451 768 -------------------N-------QNTYNSIVDGYCKL------NQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 768 -------------------~-------~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
+ ...+..++..+... +..+++.+.++++.+..|.....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~ 294 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKA 294 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHH
Confidence 1 23344555555555 88899999999999998877553
No 294
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.32 E-value=9.2 Score=37.89 Aligned_cols=21 Identities=19% Similarity=-0.009 Sum_probs=13.7
Q ss_pred HHHHHhcCCHhHHHHHHHHhh
Q 003451 776 VDGYCKLNQRYEAITFVNNLS 796 (819)
Q Consensus 776 ~~~~~~~g~~~~A~~~~~~~~ 796 (819)
+..+++.+++++|..+++-++
T Consensus 253 ~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHHH
Confidence 444557777777777777544
No 295
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.31 E-value=0.92 Score=43.86 Aligned_cols=76 Identities=16% Similarity=0.160 Sum_probs=43.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHH
Q 003451 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK-----QGCKPNQNTYN 773 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 773 (819)
..++..++..+...|+++.+...++++..... -+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 44555566666666666666666666665321 1445666666666666666666666665543 35555544443
Q ss_pred HH
Q 003451 774 SI 775 (819)
Q Consensus 774 ~l 775 (819)
.+
T Consensus 232 ~y 233 (280)
T COG3629 232 LY 233 (280)
T ss_pred HH
Confidence 33
No 296
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.24 E-value=1.8 Score=44.42 Aligned_cols=111 Identities=14% Similarity=0.050 Sum_probs=78.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHH---HCCCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCCH-
Q 003451 671 MYMYSRSENFARAEDVLREIL---AKGIKPD-----IISYNTVIFAYCRNGRMKEASRIFSEMRD-------SGLVPDV- 734 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~---~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~g~~p~~- 734 (819)
...+...|++.+|.+++...- ..|.... -..||.|...+.+.|.+.-+..+|.++.+ .|+.|..
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 344667789999988876543 1221111 23457777777778888888877777764 4655543
Q ss_pred ---------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003451 735 ---------ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKL 782 (819)
Q Consensus 735 ---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 782 (819)
......+-.|...|+.-.|.+.+.+.... +..++..|..++.+|...
T Consensus 327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 34445666788999999999999999875 677899999999998743
No 297
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.18 E-value=5.8 Score=35.15 Aligned_cols=130 Identities=16% Similarity=0.194 Sum_probs=60.0
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 003451 268 EGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLP 347 (819)
Q Consensus 268 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 347 (819)
..+.+.++.|+...+..++..+.+.|.+.. +..++..++-+|.......+-.+.. ....+.++--+|.++
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR---- 87 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR---- 87 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH----
Confidence 334445566666666666666666666553 3333344444444433333322221 222233332223221
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003451 348 SIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMR 411 (819)
Q Consensus 348 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 411 (819)
-...+..++..+...|++-+|+++.+..... +......++++..+.+|...-..+++-..
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0112445566666777777777766654222 11122334555555555544444444433
No 298
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.16 E-value=2.7 Score=38.04 Aligned_cols=98 Identities=12% Similarity=0.024 Sum_probs=57.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHHH
Q 003451 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV--ITYNTFVASYAADSLFVEALDVVRYMIKQ---GCKPNQNTYN 773 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~ 773 (819)
...+..++..|++.|+.++|.+.|.++.+....+.. ..+..++......|++..+...+.++... |-..+...-.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 345666777777777777777777777765333332 24556667777777777777777666542 1111111111
Q ss_pred --HHHHHHHhcCCHhHHHHHHHHhh
Q 003451 774 --SIVDGYCKLNQRYEAITFVNNLS 796 (819)
Q Consensus 774 --~l~~~~~~~g~~~~A~~~~~~~~ 796 (819)
.-+-.+...|++.+|...|-...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 11223346678888777766654
No 299
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.16 E-value=0.95 Score=42.72 Aligned_cols=87 Identities=17% Similarity=0.316 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CChHHHHHH
Q 003451 398 GKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQN-GMDSEVSGV 476 (819)
Q Consensus 398 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~ 476 (819)
+.++-....++.|.+-|+..|..+|+.|++.+-+-.-.- ..+|++ .+... .+-+-++++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nvfQ~------------------~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNVFQK------------------VFLHYPQQQNCAIKV 145 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHHHHH------------------HHhhCchhhhHHHHH
Confidence 444445555666777777777777777776654322110 011111 11111 122346777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003451 477 FKEMKRAGFIPERDTFNTLISAYSRCGS 504 (819)
Q Consensus 477 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 504 (819)
+++|...|+.||..+-..|++++.+.+-
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 7888888888888888888888877663
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.04 E-value=4.8 Score=35.14 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=60.2
Q ss_pred HHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCCHhHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-
Q 003451 665 TTYNTLMYM---YSRSENFARAEDVLREILAKGIKPDIISY-NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNT- 739 (819)
Q Consensus 665 ~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~- 739 (819)
.+.+.|+.. -.+.++.+++..+++.+.-. .|..... ..-...+...|++.+|..+|+++.+.+ |....-..
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kAL 83 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHH
Confidence 344444443 35667888888888877763 4442222 222344667788888888888876642 22222222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 003451 740 FVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAIT 790 (819)
Q Consensus 740 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 790 (819)
++.++...|+ ..=..+-.++.+.+-.|+.. .++..+.+..+...|..
T Consensus 84 lA~CL~~~~D-~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 84 LALCLYALGD-PSWRRYADEVLESGADPDAR---ALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHcCC-hHHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchhh
Confidence 3333333443 22233445555544333322 34445545545445444
No 301
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.03 E-value=6.1 Score=35.58 Aligned_cols=94 Identities=13% Similarity=0.092 Sum_probs=69.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003451 669 TLMYMYSRSENFARAEDVLREILAKGIKPD--IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA 746 (819)
Q Consensus 669 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 746 (819)
.+...+...+++++|...++..+.....-+ ...--.|.......|.+|+|...++...+.+.. ......-+..+..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~ 171 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence 345668889999999999998875421111 222334567788999999999999988765433 2345566788999
Q ss_pred cCChHHHHHHHHHHHHcC
Q 003451 747 DSLFVEALDVVRYMIKQG 764 (819)
Q Consensus 747 ~g~~~~A~~~~~~~~~~~ 764 (819)
.|+-++|..-|+++++.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 999999999999999864
No 302
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.81 E-value=1.9 Score=33.87 Aligned_cols=77 Identities=6% Similarity=0.064 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 003451 737 YNTFVASYAADSLF--VEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRI 814 (819)
Q Consensus 737 ~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l 814 (819)
|..-...|...... -+..+-++.+...++.|++.+....+++|.+.+++.-|+++++-+..+-..... +|..+++.|
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~-~Y~~~lqEl 89 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE-IYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT-HHHHHHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH-HHHHHHHHH
Confidence 33333344443332 355666667766777788888888888888888888888888877766443322 666666654
No 303
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.81 E-value=8.2 Score=37.05 Aligned_cols=69 Identities=13% Similarity=0.231 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhh-----hcCCCCCHHH
Q 003451 736 TYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLS-----KLDPHVTKEL 806 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~p~~~~~~ 806 (819)
.+......|..+|.+.+|..+.++.+. +.| +...|..+...|...||--+|.+.++++. +++.+.++..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 445566778899999999999999998 456 88889999999999999888888877754 3455544443
No 304
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.78 E-value=20 Score=40.34 Aligned_cols=166 Identities=13% Similarity=0.128 Sum_probs=87.4
Q ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHHCCCCCCHH-----hHHHHHHHHHhCCChHHHHHHHHHHHHCCCC----CCH
Q 003451 280 YTFNTLISCCR-RGSLHEEAAGVFEEMKLAGFSPDKV-----TYNALLDVYGKCRRPKEAMQVLREMKINGCL----PSI 349 (819)
Q Consensus 280 ~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~----~~~ 349 (819)
.++..+...+. ...++++|+..+++.....-.++.. +...++..|.+.+... |...+++..+.-.. +-.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 34445555544 5677888888877665432222211 2335566777766666 88887776553111 111
Q ss_pred hhHHHH-HHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCC---------
Q 003451 350 VTYNSL-ISAYARDGLLEEAMELKTQMVEIG---ITPDVFTYTTLLSGFE--KAGKDESAMKVFEEMRSAG--------- 414 (819)
Q Consensus 350 ~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~pd~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~--------- 414 (819)
..+..+ +..+...+++..|.+.++.+...- ..|-...+..++.+.. ..+..+++.+.++.+....
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~ 218 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV 218 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC
Confidence 222222 222223368888888887776542 2223334444444443 3455566666666653221
Q ss_pred CCCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHh
Q 003451 415 CKPNICTFNALIKMHG--NRGNFVEMMKVFDEIN 446 (819)
Q Consensus 415 ~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~ 446 (819)
..|-..+|..+++.++ ..|+++.+...++++.
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1233456666665544 5666666666655553
No 305
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.72 E-value=20 Score=40.17 Aligned_cols=43 Identities=26% Similarity=0.338 Sum_probs=26.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhC
Q 003451 284 TLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKC 327 (819)
Q Consensus 284 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 327 (819)
.++--|.|.|++++|.++..+.... +......+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3445577888888888888554443 344555666777777665
No 306
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.68 E-value=0.27 Score=30.52 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 736 TYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+|..++..|.+.|++++|++++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888553
No 307
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.62 E-value=19 Score=39.76 Aligned_cols=77 Identities=10% Similarity=0.021 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCh
Q 003451 679 NFARAEDVLREILAKGIKPDIISYNTVIFAYCRN----GRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLF 750 (819)
Q Consensus 679 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~ 750 (819)
+...+...+.+....| +......+.+.|... .+.+.|...+......+ ......++..+-. .. +
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~ 525 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-L 525 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-h
Confidence 4556666666666544 445555555554433 24777777777776654 3344444443322 22 5
Q ss_pred HHHHHHHHHHHHc
Q 003451 751 VEALDVVRYMIKQ 763 (819)
Q Consensus 751 ~~A~~~~~~~~~~ 763 (819)
..|.+++..+.+.
T Consensus 526 ~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 526 HLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHHhc
Confidence 6777777777653
No 308
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.60 E-value=0.21 Score=30.10 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcCCC
Q 003451 772 YNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 772 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
+..++.++.+.|++++|.+.++++++..|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 445677777777777777777777777665
No 309
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.19 E-value=0.36 Score=29.38 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 736 TYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+|..++.++...|++++|+..++++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566666677777777777777777766
No 310
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.14 E-value=0.5 Score=32.33 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 772 YNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 772 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
...++-++++.|++++|++..+.+++.+|++...
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3456777888888888888888888888888665
No 311
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=92.08 E-value=0.25 Score=53.07 Aligned_cols=9 Identities=44% Similarity=0.933 Sum_probs=3.3
Q ss_pred CCCCCCCCC
Q 003451 11 LPTPPPAKP 19 (819)
Q Consensus 11 ~~~p~~~~~ 19 (819)
.|.|||++|
T Consensus 279 ~s~ppppap 287 (830)
T KOG1923|consen 279 GSGPPPPAP 287 (830)
T ss_pred CCCCCCCCC
Confidence 333333333
No 312
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.98 E-value=1.6 Score=38.56 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc---CC-------HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 003451 680 FARAEDVLREILAKGIKPDIISYNTVIFAYCRN---GR-------MKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADS 748 (819)
Q Consensus 680 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~-------~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g 748 (819)
++.|.+..+.....+ +.|...++....++... .. +++|+.-|++++. +.|+. .++..++.+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 566777777655443 33566655555555433 22 3334444444444 56665 47777777776544
Q ss_pred C-----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003451 749 L-----------FVEALDVVRYMIKQGCKPNQNTYNSIVDGY 779 (819)
Q Consensus 749 ~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 779 (819)
. +++|.+.|+++.+ .+|+...|+.-+...
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 3 4555566666665 467777776555443
No 313
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.81 E-value=0.42 Score=29.01 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 736 TYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.|..++..+...|++++|++.++++++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456677777777777777777777766
No 314
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.02 E-value=3.9 Score=36.69 Aligned_cols=92 Identities=16% Similarity=0.206 Sum_probs=61.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 003451 672 YMYSRSENFARAEDVLREILAKGIKPD-----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYA 745 (819)
Q Consensus 672 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~ 745 (819)
+-+.+.|++++|..-|..++.. +++. ...|..-..++.+.+.++.|++-..+.++ +.|+. ..+..-+.+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHH
Confidence 3355677888888888877764 2222 34555556677788888888888888877 34432 23444456777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC
Q 003451 746 ADSLFVEALDVVRYMIKQGCKPN 768 (819)
Q Consensus 746 ~~g~~~~A~~~~~~~~~~~~~p~ 768 (819)
+...+++|++=|+++.+ ..|.
T Consensus 180 k~ek~eealeDyKki~E--~dPs 200 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILE--SDPS 200 (271)
T ss_pred hhhhHHHHHHHHHHHHH--hCcc
Confidence 78888888888888887 3453
No 315
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.00 E-value=3.5 Score=38.63 Aligned_cols=104 Identities=15% Similarity=0.070 Sum_probs=61.4
Q ss_pred cCCHHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHHhcCC-------hHHHHHHHHHHHHcCCCC-----CHHHHH
Q 003451 712 NGRMKEASRIFSEMRD----SGLVPDV--ITYNTFVASYAADSL-------FVEALDVVRYMIKQGCKP-----NQNTYN 773 (819)
Q Consensus 712 ~g~~~~A~~~~~~~~~----~g~~p~~--~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~p-----~~~~~~ 773 (819)
...+++|.+.+.-+.- .+..+.. ..+..++|.|...|+ +..|.+.++++.+..-.| +..+..
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 3445555555544432 1223332 355667777777776 445666666665432222 245566
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhc
Q 003451 774 SIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAKKW 818 (819)
Q Consensus 774 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~~~~ 818 (819)
.++....+.|+.++|.+++.++....-.+. ...+++.....|
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~~s~---~~~l~~~AR~~w 211 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKKASK---EPKLKDMARDQW 211 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCCCCC---cHHHHHHHHHHH
Confidence 788888899999999999999987755554 233444444444
No 316
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.84 E-value=2.2 Score=37.81 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---CC-------HHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcC
Q 003451 645 VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRS---EN-------FARAEDVLREILAKGIKPD-IISYNTVIFAYCRNG 713 (819)
Q Consensus 645 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~-------~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 713 (819)
++.|.+..+...... +.|...++.-..++... .+ +++|+.-|++.+. +.|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 667777777755543 55666655555544333 33 3445555555555 4566 578888888887654
Q ss_pred C-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003451 714 R-----------MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGC 765 (819)
Q Consensus 714 ~-----------~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 765 (819)
. +++|.+.|++..+ ..|+...|..-+... ++|-++..++.+.+.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 3 4455555555555 578888888765543 457777777776543
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.82 E-value=30 Score=38.33 Aligned_cols=171 Identities=13% Similarity=0.134 Sum_probs=95.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003451 179 LISMLGKEGKVSVAASLLHGLHKDGFD-IDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMG 257 (819)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 257 (819)
-++.+.+.+.+++|+.+.......-.. .-..++...|..|.-.|++++|-...-+|... +..-|-.-+..+...+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 356667888899998887765432110 13467888899999999999999998888765 6666766666666655
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHH
Q 003451 258 MPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVL 337 (819)
Q Consensus 258 ~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 337 (819)
.... ++.-+.......+...|..++..+.. ......++..... ....|+.+...-.- ..-+
T Consensus 438 -~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~----~~~~~F~e~i~~W----p~~Lys~l~iisa~-------~~q~ 498 (846)
T KOG2066|consen 438 -QLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA----SDVKGFLELIKEW----PGHLYSVLTIISAT-------EPQI 498 (846)
T ss_pred -ccch---hhccCCCCCcccCchHHHHHHHHHHH----HHHHHHHHHHHhC----ChhhhhhhHHHhhc-------chHH
Confidence 2222 22222222223456677777777665 2222233333332 22223332211100 1111
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003451 338 REMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVE 377 (819)
Q Consensus 338 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 377 (819)
++-. . +...-..|+..|...+++..|++++-..++
T Consensus 499 ~q~S----e-~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 499 KQNS----E-STALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred Hhhc----c-chhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 1110 1 111223377788888888888888777654
No 318
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.70 E-value=5.7 Score=30.95 Aligned_cols=65 Identities=11% Similarity=0.020 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 003451 749 LFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRI 814 (819)
Q Consensus 749 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l 814 (819)
+.-++.+-++.+...++.|++.+..+.+.+|.+.+|+.-|+++++-+..+-..+ ..+|..+++.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~-~~~y~~~lqei 86 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAH-KEIYPYILQEI 86 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCc-hhhHHHHHHHH
Confidence 344566667777777777888888888888888888888888888776443332 33566666544
No 319
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.65 E-value=7.9 Score=33.20 Aligned_cols=50 Identities=24% Similarity=0.384 Sum_probs=28.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003451 675 SRSENFARAEDVLREILAKGIKPD---IISYNTVIFAYCRNGRMKEASRIFSEMRDS 728 (819)
Q Consensus 675 ~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 728 (819)
...++.+++..+++.+.-. .|+ ..++.. ..+...|++++|.++|+++.+.
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDG--WLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHH--HHHHHcCCHHHHHHHHHhhhcc
Confidence 3456666666666666543 333 223322 3355666677777777666654
No 320
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.45 E-value=35 Score=38.45 Aligned_cols=187 Identities=13% Similarity=0.098 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHHH-CCCCCCH--HhHHHHHHHHH-hCCChHHHHHHHHHHHHCCCCCCHh-----hHHHHHHHHHHcCC
Q 003451 294 LHEEAAGVFEEMKL-AGFSPDK--VTYNALLDVYG-KCRRPKEAMQVLREMKINGCLPSIV-----TYNSLISAYARDGL 364 (819)
Q Consensus 294 ~~~~a~~~~~~~~~-~~~~~~~--~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~g~~~~~~-----~~~~li~~~~~~g~ 364 (819)
-+..|.+.++.+.+ ..++|.. .++-.+...+. ...++++|+..+++....--.++.. .-..++..+.+.+.
T Consensus 36 LI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~ 115 (608)
T PF10345_consen 36 LIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP 115 (608)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH
Confidence 35666777777663 3333332 34445555555 5677888888887664431112211 12344555655555
Q ss_pred HHHHHHHHHHHHHcCCC----CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH--ccCC
Q 003451 365 LEEAMELKTQMVEIGIT----PDVFTYTTL-LSGFEKAGKDESAMKVFEEMRSAG---CKPNICTFNALIKMHG--NRGN 434 (819)
Q Consensus 365 ~~~A~~~~~~m~~~g~~----pd~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~ 434 (819)
.. |....++.++.--. +-...+.-+ +..+...++...|.+.++.+.... ..+...++..++.+.. ..+.
T Consensus 116 ~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 116 KA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred HH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 55 77777776553111 111122222 222222367777777777665432 1223334444443332 4454
Q ss_pred HHHHHHHHHHHhhCCC---------CCCHHHHHHHHHHH--HhcCChHHHHHHHHHHH
Q 003451 435 FVEMMKVFDEINKCNC---------KPDIVTWNTLLAVF--GQNGMDSEVSGVFKEMK 481 (819)
Q Consensus 435 ~~~A~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~ 481 (819)
.+++.+.++++..... .|...+|..+++.+ ...|+++.+...++++.
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666665533211 12344455554443 34555555555555443
No 321
>PRK09687 putative lyase; Provisional
Probab=90.21 E-value=20 Score=35.38 Aligned_cols=125 Identities=16% Similarity=0.113 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003451 662 PSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG-RMKEASRIFSEMRDSGLVPDVITYNTF 740 (819)
Q Consensus 662 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l 740 (819)
++..+-...+.++.+.++ ++|...+-.+.+. ++..+-..-+.++.+.+ ..+++...+..+.. .++..+-...
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A 212 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEA 212 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHH
Confidence 355565666777777766 4566666666652 34444444445555442 24566676766664 4466666777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 003451 741 VASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 741 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 800 (819)
+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|+. +|...+.++.+..+
T Consensus 213 ~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 213 IIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 777777776 56777777776532 2 234677777788884 78888888888766
No 322
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.09 E-value=19 Score=34.76 Aligned_cols=54 Identities=19% Similarity=0.113 Sum_probs=28.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 003451 321 LDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQM 375 (819)
Q Consensus 321 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 375 (819)
...|..+|.+.+|..+.+..... .+.+...|-.|+..++..|+--.|.+-++++
T Consensus 286 a~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34455555566665555555544 2234455555555555555555555544444
No 323
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.89 E-value=16 Score=33.57 Aligned_cols=187 Identities=12% Similarity=0.021 Sum_probs=94.9
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003451 604 YSKSDLLMDTERAFLELKKKGFSPD-IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFAR 682 (819)
Q Consensus 604 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 682 (819)
|...|-+.-|+--|.+.... .|+ +..||.+.--+...|+++.|.+.|+...+.. +....+...-.-++.--|+++-
T Consensus 75 YDSlGL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeeecCchHh
Confidence 44455555555555555543 344 4557777767777888888888888777653 1122222222333445677777
Q ss_pred HHHHHHHHHHCCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003451 683 AEDVLREILAKGIK-PDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMI 761 (819)
Q Consensus 683 A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 761 (819)
|.+-+.+.-+.+.. |-...|-.+. -..-+..+|..-+.+--+ ..|..-|...+..+.-..-.++ .++++++
T Consensus 152 Aq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~ 223 (297)
T COG4785 152 AQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEE--TLMERLK 223 (297)
T ss_pred hHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHH--HHHHHHH
Confidence 77766666554321 1122332222 122345555544333221 1233444433333332221111 2233333
Q ss_pred HcCCCCC-------HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCC
Q 003451 762 KQGCKPN-------QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 762 ~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
+. -.-+ ..+|-.|+..+...|+.++|..+++-+..-+..+
T Consensus 224 a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 224 AD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred hh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHH
Confidence 21 1111 3566677777777788888888777776654433
No 324
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.88 E-value=3.7 Score=39.85 Aligned_cols=72 Identities=19% Similarity=0.235 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 003451 316 TYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVE-----IGITPDVFTYT 388 (819)
Q Consensus 316 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~~~ 388 (819)
++..++..+..+|+++.+.+.++++... .+-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|-..+..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4556666666777777777777776665 233666677777777777777777777666654 35555554443
No 325
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.58 E-value=0.47 Score=28.94 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHH
Q 003451 733 DVITYNTFVASYAADSLFVEAL 754 (819)
Q Consensus 733 ~~~~~~~l~~~~~~~g~~~~A~ 754 (819)
+...|..++..|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 3345555555555555555553
No 326
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.30 E-value=2.6 Score=38.43 Aligned_cols=58 Identities=9% Similarity=0.047 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 704 TVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 704 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.-+..+.+.+.+++|+...++-++... -|...-..+...||-.|+|++|..-++-+-+
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 334455555666666666655555321 1333445555666666666666666655554
No 327
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=89.15 E-value=26 Score=35.07 Aligned_cols=120 Identities=13% Similarity=0.023 Sum_probs=66.0
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----c
Q 003451 644 MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRS-------ENFARAEDVLREILAKGIKPDIISYNTVIFAYCR----N 712 (819)
Q Consensus 644 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 712 (819)
+..+|...++++.+.|..+.......+...|..- -+...|...+.++...+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 5666666666666665332222233333333332 12346777777777664 44444445544432 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------------ChHHHHHHHHHHHHcCCCCCHH
Q 003451 713 GRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADS---------------LFVEALDVVRYMIKQGCKPNQN 770 (819)
Q Consensus 713 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~~p~~~ 770 (819)
.+.++|..+|++..+.|. ......+. .+...| +...|...+......|......
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 273 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACE 273 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHH
Confidence 367888888888887664 33444444 455554 6666777777776655444333
No 328
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.03 E-value=0.63 Score=30.32 Aligned_cols=25 Identities=8% Similarity=0.186 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhhc
Q 003451 774 SIVDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 774 ~l~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
.|+.+|...|+.+.|+++++++++.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 3555666666666666666666643
No 329
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.81 E-value=4.8 Score=42.63 Aligned_cols=147 Identities=17% Similarity=0.176 Sum_probs=76.9
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003451 327 CRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKV 406 (819)
Q Consensus 327 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~ 406 (819)
.|+++.|..++..+. ....+.++..+-+.|..++|+++ .+|.... .....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHH
Confidence 455555555444431 22345556666666766666654 2222211 2233456777777666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003451 407 FEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFI 486 (819)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 486 (819)
..+.. +..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+.+....+-....+.|..
T Consensus 660 a~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~ 724 (794)
T KOG0276|consen 660 AVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN 724 (794)
T ss_pred HHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc
Confidence 55432 445667777777777777777777766443 334555555555555444444444444322
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003451 487 PERDTFNTLISAYSRCGSFDQAMSIYK 513 (819)
Q Consensus 487 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 513 (819)
| ...-+|...|+++++.+++.
T Consensus 725 -N-----~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 725 -N-----LAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred -c-----hHHHHHHHcCCHHHHHHHHH
Confidence 1 12223444566665555543
No 330
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.80 E-value=13 Score=34.01 Aligned_cols=81 Identities=16% Similarity=0.182 Sum_probs=57.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCH
Q 003451 709 YCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ---GCKPNQNTYNSIVDGYCKLNQR 785 (819)
Q Consensus 709 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~ 785 (819)
+.+.|+ ++|.+.|-++...+..-++.....++. |....+.++|+.++-++++. +-.+|+.++.+|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344455 778888888877665556666666654 44466778888888888763 2255788888999999999988
Q ss_pred hHHHHH
Q 003451 786 YEAITF 791 (819)
Q Consensus 786 ~~A~~~ 791 (819)
++|--+
T Consensus 195 e~AYiw 200 (203)
T PF11207_consen 195 EQAYIW 200 (203)
T ss_pred hhhhhh
Confidence 887543
No 331
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.74 E-value=6.3 Score=38.15 Aligned_cols=105 Identities=17% Similarity=0.210 Sum_probs=73.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC
Q 003451 202 DGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEG---CKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPD 278 (819)
Q Consensus 202 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~ 278 (819)
.|....+.+...++..-....+.++++..+-++...- ..++. +-.+.++.+.+. +.++++.++..=+..|+-||
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllky--~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLKY--DPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHcc--ChHHHHHHHhCcchhccccc
Confidence 3445555556666666666778888888887776431 11111 122334444443 47788888888888899999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 003451 279 SYTFNTLISCCRRGSLHEEAAGVFEEMKLAG 309 (819)
Q Consensus 279 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 309 (819)
.++++.+++.+.+.+++.+|..+...|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888777653
No 332
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=88.18 E-value=34 Score=35.18 Aligned_cols=74 Identities=16% Similarity=0.251 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003451 668 NTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA 746 (819)
Q Consensus 668 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 746 (819)
..|+.-|...|+..+|.+.++++--- +-.....+.+++.+.-+.|+-..-+.++++.-..|+. |-+.+-.+|.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI----T~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI----TTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce----eHHHhhhhhhh
Confidence 45667788889999998888776321 1124677888888888888877788888887776644 55555555543
No 333
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.17 E-value=0.97 Score=28.99 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 003451 770 NTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 770 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
.+++.++..|...|++++|..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566677777777777777777776654
No 334
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.76 E-value=0.93 Score=26.55 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhhcCCC
Q 003451 771 TYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 771 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
.|..++..+...|++++|...++++++..|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666677777777777776666553
No 335
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.56 E-value=20 Score=31.86 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003451 317 YNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVE 377 (819)
Q Consensus 317 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 377 (819)
+..++..+...|++-+|+++.+..... +...-..++.+-.+.++...-..+|+-..+
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666677777777777777665221 222234455555555554444444444433
No 336
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.32 E-value=42 Score=35.30 Aligned_cols=162 Identities=14% Similarity=0.107 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003451 525 STYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVY 604 (819)
Q Consensus 525 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 604 (819)
....+++..+..+-++.-.+.+..+|...| -+...|..++.+|... ..++-..+|+.+.+.. -.+.+....++..|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d-fnDvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD-FNDVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-chhHHHHHHHHHHH
Confidence 333444444444444444555555554432 2344444555555444 3344444455444432 12233333333333
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcC
Q 003451 605 SKSDLLMDTERAFLELKKKGFSP--D---IPTLNAMISIYGRRQMVAKTNEILHFMNDS-GFTPSLTTYNTLMYMYSRSE 678 (819)
Q Consensus 605 ~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g 678 (819)
.+ ++.+.+..+|.++..+-++. + ...|.-+.... ..+.+..+.+..++... |...-...+..+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 33 44444545554444321110 0 01222222110 23344444444444432 32333344444555566666
Q ss_pred CHHHHHHHHHHHHHC
Q 003451 679 NFARAEDVLREILAK 693 (819)
Q Consensus 679 ~~~~A~~~~~~~~~~ 693 (819)
++++|++++..+++.
T Consensus 220 N~~eai~Ilk~il~~ 234 (711)
T COG1747 220 NWTEAIRILKHILEH 234 (711)
T ss_pred CHHHHHHHHHHHhhh
Confidence 666666666665554
No 337
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.11 E-value=58 Score=36.78 Aligned_cols=108 Identities=15% Similarity=0.189 Sum_probs=71.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHH-------H--------hcCChHHHHHHHHHHHHcCCCC
Q 003451 709 YCRNGRMKEASRIFSEMRDSG------LVPDVITYNTFVASY-------A--------ADSLFVEALDVVRYMIKQGCKP 767 (819)
Q Consensus 709 ~~~~g~~~~A~~~~~~~~~~g------~~p~~~~~~~l~~~~-------~--------~~g~~~~A~~~~~~~~~~~~~p 767 (819)
+...|++.+|.+.|..++-.- -.-+..-...++..+ . ..+..+.+.++........++|
T Consensus 1001 ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp 1080 (1202)
T KOG0292|consen 1001 LTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQP 1080 (1202)
T ss_pred hhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCc
Confidence 346799999999998887420 011111222222222 1 2234555655555555556777
Q ss_pred C--HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Q 003451 768 N--QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAK 816 (819)
Q Consensus 768 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~~ 816 (819)
- ..+....+..+.|.+++..|..+..+++++.|.++.....+.+...+.
T Consensus 1081 ~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~e 1131 (1202)
T KOG0292|consen 1081 MHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAE 1131 (1202)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhh
Confidence 4 345667788899999999999999999999999998887777666554
No 338
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.05 E-value=20 Score=31.40 Aligned_cols=70 Identities=16% Similarity=0.053 Sum_probs=43.8
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003451 184 GKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKM 256 (819)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 256 (819)
.+.++.++++.+++.+.--.+. ....-..-...+.+.|+|.+|+.+|+.+.+.. |.......|+..|...
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYA 90 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHH
Confidence 4567888888888877654333 22333333445678888999999998887653 3444445555544443
No 339
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.57 E-value=13 Score=34.78 Aligned_cols=81 Identities=10% Similarity=0.103 Sum_probs=34.3
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHH
Q 003451 641 RRQMVAKTNEILHFMNDSGFTPSLTT-YNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEA 718 (819)
Q Consensus 641 ~~~~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 718 (819)
....++.|+..+.+.+.. .|+..+ |..-+-++.+..+++.+..--.+.++ +.|| +.....+..++.....+++|
T Consensus 22 ~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred chhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 334455555544444432 344433 23333444444455544444444443 2333 22222333344444445555
Q ss_pred HHHHHHH
Q 003451 719 SRIFSEM 725 (819)
Q Consensus 719 ~~~~~~~ 725 (819)
+..+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 5555544
No 340
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=86.31 E-value=0.58 Score=52.49 Aligned_cols=15 Identities=53% Similarity=0.904 Sum_probs=8.2
Q ss_pred CCCCCCCCCCCCCCC
Q 003451 5 LSLPLLLPTPPPAKP 19 (819)
Q Consensus 5 ~~~~~~~~~p~~~~~ 19 (819)
.+||+--||||||||
T Consensus 2 a~lppg~pppppppp 16 (2365)
T COG5178 2 ASLPPGNPPPPPPPP 16 (2365)
T ss_pred CCCCCCCCcccccCC
Confidence 367765555555444
No 341
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.09 E-value=7.3 Score=36.24 Aligned_cols=120 Identities=12% Similarity=0.071 Sum_probs=82.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCC
Q 003451 672 YMYSRSENFARAEDVLREILAKGIKPDI-ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI-TYNTFVASYAADSL 749 (819)
Q Consensus 672 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~ 749 (819)
.-|.....+..|+..|.+.+.. .|.. ..|..=+.++.+..+++.+..-..+.++ +.|+.. ....++.++.....
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred ccccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcc
Confidence 3466677888888888888874 5665 4555666777788888888888877776 666654 55567777788888
Q ss_pred hHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHh
Q 003451 750 FVEALDVVRYMIK----QGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNL 795 (819)
Q Consensus 750 ~~~A~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 795 (819)
+++|+..+.++.. ..+.+-..++..|..+-.+.=...++.++.++.
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 9999998888743 334445567777776654444555555555443
No 342
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.02 E-value=63 Score=36.06 Aligned_cols=73 Identities=11% Similarity=0.072 Sum_probs=37.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 003451 391 LSGFEKAGKDESAMKVFEEMRSAGCKP---NICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQN 467 (819)
Q Consensus 391 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (819)
++.+.+.+.+++|..+.+..... .+ -......+|..+...|++++|-...-.|.. -+..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 45555666666666655543322 22 234455556666666666666665555542 2344444444444444
Q ss_pred CC
Q 003451 468 GM 469 (819)
Q Consensus 468 g~ 469 (819)
++
T Consensus 437 ~~ 438 (846)
T KOG2066|consen 437 DQ 438 (846)
T ss_pred cc
Confidence 43
No 343
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.89 E-value=32 Score=32.64 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH---hHHHHHHHHHhCCChHHHHHHHHHHH
Q 003451 293 SLHEEAAGVFEEMKLAGFSPDKV---TYNALLDVYGKCRRPKEAMQVLREMK 341 (819)
Q Consensus 293 g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 341 (819)
...++|+.-|++.++..-..... +...++..+.+.|++++..+.+.++.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 35566666666666542222222 23334666677777777776666664
No 344
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.44 E-value=1.6 Score=26.42 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 736 TYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+|..++..|...|++++|...+++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666666666666666665
No 345
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.42 E-value=6.2 Score=38.62 Aligned_cols=90 Identities=14% Similarity=0.049 Sum_probs=41.8
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH
Q 003451 636 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM 715 (819)
Q Consensus 636 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 715 (819)
.+.|.+.|.+++|+..+....... +-+.+++..-..+|.+.+.+..|..--+.++..+ ..-...|..-+.+-...|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 445555566666666555554431 2255555555555555555555554444444321 00122333333333344445
Q ss_pred HHHHHHHHHHHH
Q 003451 716 KEASRIFSEMRD 727 (819)
Q Consensus 716 ~~A~~~~~~~~~ 727 (819)
.+|.+-++..++
T Consensus 182 ~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 182 MEAKKDCETVLA 193 (536)
T ss_pred HHHHHhHHHHHh
Confidence 555554444444
No 346
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.35 E-value=13 Score=39.66 Aligned_cols=132 Identities=17% Similarity=0.118 Sum_probs=79.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 003451 281 TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYA 360 (819)
Q Consensus 281 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 360 (819)
..+.++..+.+.|..++|+++- +|.... .....+.|+++.|.++..+. .+..-|..|..+..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHh
Confidence 4455566666666666665442 222211 12234667777777776665 25566788888888
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003451 361 RDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMK 440 (819)
Q Consensus 361 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 440 (819)
+.|++..|.+.|.+... |..|+-.+...|+-+....+-....+.|.. | ...-+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHHHHHH
Confidence 88888888887776553 445666666777766655555555555421 2 22234556777777777
Q ss_pred HHHHH
Q 003451 441 VFDEI 445 (819)
Q Consensus 441 ~~~~~ 445 (819)
++.+-
T Consensus 743 lLi~t 747 (794)
T KOG0276|consen 743 LLIST 747 (794)
T ss_pred HHHhc
Confidence 76553
No 347
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=84.95 E-value=17 Score=29.94 Aligned_cols=62 Identities=6% Similarity=0.070 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 003451 752 EALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRI 814 (819)
Q Consensus 752 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l 814 (819)
|..+-+..+...++.|++.+....+.+|.+.+|+.-|.++++-+..+-+.... .|..+++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~-~Y~y~v~el 128 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQ-VYPYYVKEL 128 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHH-HHHHHHHHH
Confidence 44555666667778888888888888888888888888888887665444333 566666654
No 348
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.48 E-value=7.9 Score=30.19 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003451 717 EASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMI 761 (819)
Q Consensus 717 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 761 (819)
++.+-+..+....+.|++.+..+.+.+|.+-+++.-|+++++-..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444455555556666666666666666666666666666554
No 349
>PRK10941 hypothetical protein; Provisional
Probab=84.48 E-value=10 Score=36.94 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHH-HHHHHHH
Q 003451 737 YNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELE-CKLSDRI 814 (819)
Q Consensus 737 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-~~l~~~l 814 (819)
..++-.+|.+.++++.|+.+.+.++. +.| ++.-+.--+..|.+.|.+..|..-++..++..|+++.... ...+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 44666778899999999999999988 567 5666777888899999999999999999999888777643 3355555
Q ss_pred H
Q 003451 815 A 815 (819)
Q Consensus 815 ~ 815 (819)
.
T Consensus 262 ~ 262 (269)
T PRK10941 262 E 262 (269)
T ss_pred h
Confidence 4
No 350
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.28 E-value=2.5 Score=26.95 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003451 701 SYNTVIFAYCRNGRMKEASRIFSEMR 726 (819)
Q Consensus 701 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 726 (819)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34444445555555555555554444
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.09 E-value=83 Score=35.83 Aligned_cols=225 Identities=14% Similarity=0.044 Sum_probs=118.7
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCC-------HHHHHHHHH-HHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 003451 430 GNRGNFVEMMKVFDEINKCNCKPD-------IVTWNTLLA-VFGQNGMDSEVSGVFKEMKRA----GFIPERDTFNTLIS 497 (819)
Q Consensus 430 ~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~l~~ 497 (819)
....++++|..++.++...-..|+ ...|+.+-. +....|+.++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 356788888888877755422222 123444432 334678888888888776653 23334556777778
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH---HH--HHHHhcCC--HHHHHHHHHHHHhC---CC---CCCHHHHHH
Q 003451 498 AYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNA---VL--AALARGGM--WEQSEKIFAEMKGG---RC---KPNELTYSS 564 (819)
Q Consensus 498 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---l~--~~~~~~g~--~~~A~~~~~~m~~~---~~---~~~~~~~~~ 564 (819)
+..-.|++++|..+.....+..-.-+...+.. +. ..+..+|+ +.+....|...... .. .+-..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88888999999988877665422223333332 22 23455663 33333334333221 00 122234444
Q ss_pred HHHHHHcc-CCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHH
Q 003451 565 LLHAYANG-REIDQMLALSEEIYSGIIEPHAVL--LKTLILVYSKSDLLMDTERAFLELKKKGFSP----DIPTLNAMIS 637 (819)
Q Consensus 565 l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~ 637 (819)
++.++.+. +...++..-++........+-... +..++..+...|++++|...++++......+ +-.+....+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555441 112222222222222222222222 2367778888899999998888877533222 2222222222
Q ss_pred H--HHhcCChHHHHHHHHH
Q 003451 638 I--YGRRQMVAKTNEILHF 654 (819)
Q Consensus 638 ~--~~~~~~~~~A~~~~~~ 654 (819)
. ....|+.+++...+.+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 2 2456777777776655
No 352
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=83.97 E-value=4.4 Score=42.67 Aligned_cols=95 Identities=12% Similarity=0.075 Sum_probs=61.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 003451 710 CRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAI 789 (819)
Q Consensus 710 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 789 (819)
...|+...|.+.+..+......-..+..-.++..+.+.|...+|-+++.+.+... ...+-++..++++|....+.+.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3567777777777666542222122345566666777777777777777766543 335566667777777777777777
Q ss_pred HHHHHhhhcCCCCCHH
Q 003451 790 TFVNNLSKLDPHVTKE 805 (819)
Q Consensus 790 ~~~~~~~~~~p~~~~~ 805 (819)
+.++.+.++.|++...
T Consensus 697 ~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPEC 712 (886)
T ss_pred HHHHHHHhcCCCChhh
Confidence 7777777777776443
No 353
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.77 E-value=22 Score=33.29 Aligned_cols=72 Identities=14% Similarity=0.225 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHHHH
Q 003451 736 TYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECK 809 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 809 (819)
.+.++..++...|++-++++...+.+.. .| |...|..-+.+....=+.++|..-+.++++++|.-.++.-+.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~--~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrE 304 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRH--HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRE 304 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHH
Confidence 4556667777888888888888888874 44 677777777777777788888888999999988876665444
No 354
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.63 E-value=93 Score=36.02 Aligned_cols=28 Identities=11% Similarity=0.466 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003451 456 TWNTLLAVFGQNGMDSEVSGVFKEMKRA 483 (819)
Q Consensus 456 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 483 (819)
-|..|+..|...|+.++|+++|.+..+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 3677788888888888888888877663
No 355
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=83.62 E-value=48 Score=32.69 Aligned_cols=97 Identities=18% Similarity=0.147 Sum_probs=56.0
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCC----H
Q 003451 349 IVTYNSLISAYARDGLLEEAMELKTQMV----EIGITPDVFTYTTLL-SGFEKAGKDESAMKVFEEMRSAGCKPN----I 419 (819)
Q Consensus 349 ~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~pd~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~----~ 419 (819)
..++-.....||+.|+-+.|++.+.+.. ..|.+.|+..+..=+ -.|....-+.+-++..+.+.+.|...+ .
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 3456666778888888888887766554 346677766544322 223333334455555555666665443 2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 003451 420 CTFNALIKMHGNRGNFVEMMKVFDEINK 447 (819)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 447 (819)
.+|..+-.+ ...++.+|-.+|-+...
T Consensus 184 KvY~Gly~m--svR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGLYCM--SVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHH--HHHhHHHHHHHHHHHcc
Confidence 344443322 34567777777766553
No 356
>PRK11619 lytic murein transglycosylase; Provisional
Probab=83.34 E-value=86 Score=35.41 Aligned_cols=413 Identities=10% Similarity=-0.007 Sum_probs=194.4
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003451 324 YGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESA 403 (819)
Q Consensus 324 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A 403 (819)
..+.|++..+..+..++... .......|-.|..... ....++...++++... .+.....-...+..+.+.+++...
T Consensus 43 a~~~g~~~~~~~~~~~l~d~-pL~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~~--~P~~~~Lr~~~l~~La~~~~w~~~ 118 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDY-PLYPYLEYRQLTQDLM-NQPAVQVTNFIRANPT--LPPARSLQSRFVNELARREDWRGL 118 (644)
T ss_pred HHHCCCHHHHHHHHHhccCC-CcHhHHHHHHHHhccc-cCCHHHHHHHHHHCCC--CchHHHHHHHHHHHHHHccCHHHH
Confidence 34667777777776666322 1112222333222111 2234443333333211 111122222334444555666655
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003451 404 MKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA 483 (819)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 483 (819)
...+.. .+.+.........+....|+.++|......+=..| ..... ..-.+|+...+.
T Consensus 119 ~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~----------------~cd~l~~~~~~~ 176 (644)
T PRK11619 119 LAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPN----------------ACDKLFSVWQQS 176 (644)
T ss_pred HHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCCh----------------HHHHHHHHHHHc
Confidence 542211 13344455556666666777666655555443222 11222 223344444444
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 003451 484 GFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPD-LSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTY 562 (819)
Q Consensus 484 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 562 (819)
|...+...+.- +......|+...|..+...+. ++ ......++..+. +...+..++... .++...-
T Consensus 177 g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l~-----~~~~~~a~a~~al~~---~p~~~~~~~~~~-----~~~~~~~ 242 (644)
T PRK11619 177 GKQDPLAYLER-IRLAMKAGNTGLVTYLAKQLP-----ADYQTIASALIKLQN---DPNTVETFARTT-----GPTDFTR 242 (644)
T ss_pred CCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhcC-----hhHHHHHHHHHHHHH---CHHHHHHHhhcc-----CCChhhH
Confidence 43333333333 233445566666666655541 12 122223333322 223333322221 1222111
Q ss_pred HHHHHHH--HccCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003451 563 SSLLHAY--ANGREIDQMLALSEEIYSGI-IEPH--AVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMIS 637 (819)
Q Consensus 563 ~~l~~~~--~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 637 (819)
..++-++ ....+.+.|..++....... .... ..+...++......+...++...++...... .+......-+.
T Consensus 243 ~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r 320 (644)
T PRK11619 243 QMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVR 320 (644)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHH
Confidence 1111122 23556788888888764433 2222 2233344333333333556666666654432 23333444444
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH-H
Q 003451 638 IYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM-K 716 (819)
Q Consensus 638 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~ 716 (819)
.-.+.++++.+...+..|-... .-...-.-=+.+++...|+.++|..+|+++... ...|..|.. .+.|.. .
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-----~~fYG~LAa--~~Lg~~~~ 392 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-----RGFYPMVAA--QRLGEEYP 392 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CCcHHHHHH--HHcCCCCC
Confidence 5557888888888888875532 223333445677777789999999999987431 123333221 122221 0
Q ss_pred --HH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 003451 717 --EA-SRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVN 793 (819)
Q Consensus 717 --~A-~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 793 (819)
.. ...-.. . +..+ .-..-+..+...|+..+|...+..+.+. .+......++....+.|..+.++....
T Consensus 393 ~~~~~~~~~~~--~--~~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 393 LKIDKAPKPDS--A--LTQG--PEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred CCCCCCCchhh--h--hccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 00 000000 0 0001 1122344567778888888888887763 344455566666678888888777665
Q ss_pred Hh
Q 003451 794 NL 795 (819)
Q Consensus 794 ~~ 795 (819)
+.
T Consensus 464 ~~ 465 (644)
T PRK11619 464 AG 465 (644)
T ss_pred hc
Confidence 43
No 357
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.30 E-value=85 Score=35.33 Aligned_cols=88 Identities=15% Similarity=0.050 Sum_probs=35.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHc--
Q 003451 355 LISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGC-KPNICTFNALIKMHGN-- 431 (819)
Q Consensus 355 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-- 431 (819)
....+.-.|+++.|.+.+-+ ..+...|.+.+... +...|-+......-..+..... .+...-+..||..|++
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIa---L~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIA---LAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHH---HHHTT------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHH---HHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34556678888888888776 12223344433333 3333333322222233332210 1111445667777764
Q ss_pred -cCCHHHHHHHHHHHhh
Q 003451 432 -RGNFVEMMKVFDEINK 447 (819)
Q Consensus 432 -~g~~~~A~~~~~~~~~ 447 (819)
..+..+|.++|--+..
T Consensus 339 ~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 339 EITDPREALQYLYLICL 355 (613)
T ss_dssp TTT-HHHHHHHHHGGGG
T ss_pred hccCHHHHHHHHHHHHH
Confidence 4566777777665554
No 358
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.25 E-value=0.029 Score=49.20 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=22.8
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 003451 322 DVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKT 373 (819)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 373 (819)
..+.+.+.+.....+++.+...+...+....+.++..|++.+..++..++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3344444444444445444443333344444555555555444444444443
No 359
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.79 E-value=12 Score=34.10 Aligned_cols=71 Identities=13% Similarity=0.137 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 003451 472 EVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA---GVTPDLSTYNAVLAALARGGMWEQS 543 (819)
Q Consensus 472 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A 543 (819)
+|...|-.+...+..-+......|+..|. ..+.+++..++.++.+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444444434444444443333 34555555555555543 2244555566666666665555554
No 360
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.53 E-value=14 Score=35.99 Aligned_cols=99 Identities=19% Similarity=0.182 Sum_probs=65.5
Q ss_pred cHHHHHHhhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003451 135 DLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSL 214 (819)
Q Consensus 135 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 214 (819)
++-..+.......+.+.+...+..+++ +.+. ......+...+++.|.+.. .+.+..++..-++.|+.+|.++++.+
T Consensus 66 ~Vd~~V~v~~~~~~idd~~~~LyKlRh--s~~a-~~~~~~~~~~~irlllky~-pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 66 TVDRLVDVISSREEIDDAEYYLYKLRH--SPNA-WYLRNWTIHTWIRLLLKYD-PQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred ehhhhhhccccccchhHHHHHHHHHhc--Ccch-hhhccccHHHHHHHHHccC-hHHHHHHHhCcchhccccchhhHHHH
Confidence 333334444445667788888877765 2211 1122234455666665543 45777777777888899999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 003451 215 ITTYASNGRYREAVMVFKKMEEE 237 (819)
Q Consensus 215 i~~~~~~g~~~~A~~~~~~m~~~ 237 (819)
|+.+.+.+++.+|..+...|...
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999988888777666543
No 361
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=82.47 E-value=41 Score=31.05 Aligned_cols=159 Identities=12% Similarity=0.122 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 003451 594 AVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYM 673 (819)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 673 (819)
+..++.++-.+...|+++.|.+.|+...+.+..-+-...|.-+. +--.|++.-|.+-+...-+.. +.|++ .+ ++.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D-~~DPf--R~-LWL 173 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDD-PNDPF--RS-LWL 173 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcC-CCChH--HH-HHH
Confidence 55666666666777777777777777776543322222222222 223466777766666555543 22322 11 122
Q ss_pred HH--hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHH
Q 003451 674 YS--RSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-------VITYNTFVASY 744 (819)
Q Consensus 674 ~~--~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~~~~l~~~~ 744 (819)
|. ..-+..+|..-+.+-.+ ..|..-|...+-.|.- |++. ...+++++.+. -..+ .+||..++.-+
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHH
Confidence 22 22355566554433222 1233344333322221 2211 12223333321 1111 24788888888
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 003451 745 AADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 745 ~~~g~~~~A~~~~~~~~~~ 763 (819)
...|+.++|..+++-++..
T Consensus 248 l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 248 LSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hccccHHHHHHHHHHHHHH
Confidence 8899999999999888764
No 362
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=81.47 E-value=76 Score=33.49 Aligned_cols=99 Identities=5% Similarity=0.060 Sum_probs=66.6
Q ss_pred CCCHhHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003451 696 KPDIISY-NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASY--AADSLFVEALDVVRYMIKQGCKPNQNTY 772 (819)
Q Consensus 696 ~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 772 (819)
.++..++ +.+++.+.+.|-+++|...+..+... ..|+...|..++..- ..+.+..-+.++|+.|... +..|+..|
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw 533 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLW 533 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHH
Confidence 3454443 55677778888899999999998874 344556666666542 2223477788888888743 22677788
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhh
Q 003451 773 NSIVDGYCKLNQRYEAITFVNNLS 796 (819)
Q Consensus 773 ~~l~~~~~~~g~~~~A~~~~~~~~ 796 (819)
......-...|..+.+-.++-++.
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHH
Confidence 777766667888777766666554
No 363
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.31 E-value=9.8 Score=30.07 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 717 EASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 717 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+..+-+..+....+.|++.+..+.+.+|.+-+++..|+++++-...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444555555666666666666666666666666666666553
No 364
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.65 E-value=2.4 Score=25.27 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 737 YNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 737 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+..++.++.+.|++++|.+.++++++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34555666666666666666666665
No 365
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.25 E-value=2.8 Score=23.56 Aligned_cols=21 Identities=10% Similarity=0.042 Sum_probs=11.5
Q ss_pred HHHHHHHHhcCCHhHHHHHHH
Q 003451 773 NSIVDGYCKLNQRYEAITFVN 793 (819)
Q Consensus 773 ~~l~~~~~~~g~~~~A~~~~~ 793 (819)
..++..+...|+.++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555555566655555543
No 366
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=78.45 E-value=87 Score=32.40 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=34.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003451 423 NALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG 484 (819)
Q Consensus 423 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 484 (819)
..|+.-|...|+..+|.+.++++--- .-.....+..++.+.-+.|+....+.++++....|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 34556666666666666666654310 01123455666666666666666666666555554
No 367
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=78.20 E-value=92 Score=32.51 Aligned_cols=121 Identities=14% Similarity=0.071 Sum_probs=68.1
Q ss_pred HhCCChHHHH-HHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003451 325 GKCRRPKEAM-QVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESA 403 (819)
Q Consensus 325 ~~~g~~~~A~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A 403 (819)
...|++-.|- +++.-+......|+.+...+ ..+...|+++.+...+...... +.....+..++++...+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 3456655553 34444443333344443333 2345567788777777665443 333445667777777777888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 003451 404 MKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCN 449 (819)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 449 (819)
...-+.|....+. +..+........-..|-+|++...++++...+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 8777777765444 22222222223334566777777777766544
No 368
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.11 E-value=41 Score=28.43 Aligned_cols=24 Identities=8% Similarity=0.081 Sum_probs=11.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 003451 739 TFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.++-++++.++|++++++++.+++
T Consensus 76 YLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 76 YLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHh
Confidence 333344444444444444444444
No 369
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=77.93 E-value=73 Score=35.52 Aligned_cols=24 Identities=8% Similarity=0.213 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003451 208 VYAYTSLITTYASNGRYREAVMVFK 232 (819)
Q Consensus 208 ~~~~~~li~~~~~~g~~~~A~~~~~ 232 (819)
...|. .+..+.-.|+++.|..+++
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~ 172 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLR 172 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHH
Confidence 45555 4556666677777766664
No 370
>PRK09687 putative lyase; Provisional
Probab=77.79 E-value=77 Score=31.39 Aligned_cols=121 Identities=11% Similarity=0.042 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003451 418 NICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNG-MDSEVSGVFKEMKRAGFIPERDTFNTLI 496 (819)
Q Consensus 418 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 496 (819)
+..+-...+.++.+.++ .++...+-.+.+ .++...-...+.++.+.+ ...++...+..+.. .++...-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 34444444555555544 334444444443 223333333333333332 12233333333332 22444444555
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003451 497 SAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKG 552 (819)
Q Consensus 497 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 552 (819)
.++.+.|+ ..|...+-...+.+ + .....+.++...|.. +|...+..+.+
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 55555555 33444444444331 1 122344455555552 45555555554
No 371
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=77.61 E-value=71 Score=30.91 Aligned_cols=160 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHhhCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 003451 651 ILHFMNDSG--------FTPSLTTYNTLMYMYSRSENFARAEDVLREIL-AKGIKPDIISYNTVIFAYCRNGRMKEASRI 721 (819)
Q Consensus 651 ~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 721 (819)
+++-+.+.| +..|...+|+++. -+...+++--+-+++.. ..|-.-....+..++..|++.++.+.+.++
T Consensus 60 lYkyL~E~~n~kt~a~~ikfD~~~~n~l~k--kneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~ 137 (412)
T COG5187 60 LYKYLAEKGNPKTSASVIKFDRGRMNTLLK--KNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEW 137 (412)
T ss_pred HHHHHHhccCCcccchheehhhHHHHHHHH--hhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred HHHHHHC----CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 003451 722 FSEMRDS----GLVPDVI-TYNTFVASYAADSLFVEALDVVRYMIKQGCKP--NQNTYNSIVDGYCKLNQRYEAITFVNN 794 (819)
Q Consensus 722 ~~~~~~~----g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 794 (819)
..+..+. |...|.. +-..++-.|....-.++-++..+.|+++|-.- ....=..-+-.+....++.+|..++-.
T Consensus 138 ~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d 217 (412)
T COG5187 138 MRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSD 217 (412)
T ss_pred HHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred hhhcCCCCCHHHHHHHHH
Q 003451 795 LSKLDPHVTKELECKLSD 812 (819)
Q Consensus 795 ~~~~~p~~~~~~~~~l~~ 812 (819)
...--....-.-|...+.
T Consensus 218 ~l~tF~S~El~sY~~~vr 235 (412)
T COG5187 218 ILPTFESSELISYSRAVR 235 (412)
T ss_pred HhccccccccccHHHHHH
No 372
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=77.56 E-value=9.1 Score=40.50 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003451 646 AKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEM 725 (819)
Q Consensus 646 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 725 (819)
+-|..++..|.. ...|--.++|...-.+...|+...|.+.+..+.........+....|+..+.+.|...+|-.++.+.
T Consensus 590 e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 590 EIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 334444444443 2234434444444445667899999999888775432223455666777788888889999999888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 003451 726 RDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYC 780 (819)
Q Consensus 726 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 780 (819)
+... ...+.++..++.++....+++.|++.++.+.+. .| +.++-+.|...-|
T Consensus 669 l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~--~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 669 LAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKL--TTKCPECENSLKLIRC 721 (886)
T ss_pred Hhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc--CCCChhhHHHHHHHHH
Confidence 8754 335568888999999999999999999999884 45 5555555554433
No 373
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.69 E-value=49 Score=28.60 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=36.2
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003451 185 KEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEG 238 (819)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 238 (819)
..++.++++.+++.|.--.+. ....-..-...+...|+|.+|..+|+.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 477888888888877654332 22222233345678889999999999988764
No 374
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.20 E-value=5.7 Score=25.96 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=12.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 003451 320 LLDVYGKCRRPKEAMQVLREMKI 342 (819)
Q Consensus 320 l~~~~~~~g~~~~A~~~~~~~~~ 342 (819)
|..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44455555555555555555543
No 375
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=76.19 E-value=55 Score=30.76 Aligned_cols=25 Identities=32% Similarity=0.236 Sum_probs=13.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 003451 704 TVIFAYCRNGRMKEASRIFSEMRDS 728 (819)
Q Consensus 704 ~l~~~~~~~g~~~~A~~~~~~~~~~ 728 (819)
.++....+.|++++|.++|.++...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3344455555555555555555543
No 376
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.44 E-value=25 Score=27.78 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=25.1
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003451 323 VYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIG 379 (819)
Q Consensus 323 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 379 (819)
.+...|++++|..+.+.+ +.||...|-.|... +.|..+++..-+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 344555555555555544 45555555544332 3444444444444444443
No 377
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=75.25 E-value=1.4e+02 Score=33.23 Aligned_cols=120 Identities=11% Similarity=0.102 Sum_probs=70.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 003451 602 LVYSKSDLLMDTERAFLELKKKGFSPDIPT----LNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRS 677 (819)
Q Consensus 602 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 677 (819)
-++..-|+.++|..+.+++.... |+.. ...++.+|+-.|+.....+++.-.... ...|..-+..+.-++.-.
T Consensus 509 iaL~~ygrqe~Ad~lI~el~~dk---dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~ 584 (929)
T KOG2062|consen 509 IALVVYGRQEDADPLIKELLRDK---DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLF 584 (929)
T ss_pred HHHHHhhhhhhhHHHHHHHhcCC---chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEe
Confidence 34455567777777777777532 2221 234555667777766666666655543 244555555555666667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 003451 678 ENFARAEDVLREILAKGIKPDIISYNTV--IFAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 678 g~~~~A~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 727 (819)
.+.+....+.+-+.+. ..|.+..-.++ .-+|+-.| ..+|..+++-|..
T Consensus 585 ~dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 585 RDPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred cChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 7777777777766553 44544433333 33344444 4778888888765
No 378
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.79 E-value=1.7e+02 Score=33.96 Aligned_cols=62 Identities=19% Similarity=0.149 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH-HHHHHHH---HHHHcCCHHHHHHHHHHHHHc
Q 003451 176 IAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVY-AYTSLIT---TYASNGRYREAVMVFKKMEEE 237 (819)
Q Consensus 176 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~---~~~~~g~~~~A~~~~~~m~~~ 237 (819)
+..-+..+...+++++|..+.+.....+..-... .+..... -+..+|++++|++.|.++...
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d 375 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEID 375 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccC
Confidence 5555666667777888888777655432211111 1122222 255788999999999988653
No 379
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=74.20 E-value=1.1e+02 Score=31.22 Aligned_cols=119 Identities=8% Similarity=0.032 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh---cCCHHHHHHH
Q 003451 645 VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR---NGRMKEASRI 721 (819)
Q Consensus 645 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~ 721 (819)
.+.-+.+++++++.+ +.+...+..++..+.+..+.++..+-|++++... .-+...|...++.... .-.+++...+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 345567788877763 4556667778888888888888888888888763 2257777777765544 2346677777
Q ss_pred HHHHHHC------CC------CCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003451 722 FSEMRDS------GL------VPDV-----ITYNTFVASYAADSLFVEALDVVRYMIKQGC 765 (819)
Q Consensus 722 ~~~~~~~------g~------~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 765 (819)
|.+.+.. |. .++. ..+..+...+...|..+.|+.+++.+++.++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 6666541 11 0111 1344455556688999999999999888764
No 380
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=73.95 E-value=12 Score=25.68 Aligned_cols=30 Identities=7% Similarity=0.061 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003451 738 NTFVASYAADSLFVEALDVVRYMIKQGCKPNQ 769 (819)
Q Consensus 738 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 769 (819)
..++-++.+.|++++|.+.++.+++ +.|+.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N 34 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLE--IEPDN 34 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--hCCCc
Confidence 3455566677777777777777766 46643
No 381
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=73.94 E-value=1.1e+02 Score=31.51 Aligned_cols=96 Identities=19% Similarity=0.121 Sum_probs=65.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHc------CCCCCHHHHHHHHH
Q 003451 705 VIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA-ADSLFVEALDVVRYMIKQ------GCKPNQNTYNSIVD 777 (819)
Q Consensus 705 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~------~~~p~~~~~~~l~~ 777 (819)
.+..+.+.|-+..|.++.+-+......-|+.....++..|+ +.++++--+++++..... ..-|+. ..+++-
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~--a~S~aL 186 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF--AFSIAL 186 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH--HHHHHH
Confidence 35677889999999999999988544445666566666654 678888888888876542 113332 234555
Q ss_pred HHHhcCCH---------------hHHHHHHHHhhhcCCCC
Q 003451 778 GYCKLNQR---------------YEAITFVNNLSKLDPHV 802 (819)
Q Consensus 778 ~~~~~g~~---------------~~A~~~~~~~~~~~p~~ 802 (819)
++...++. ++|...+.++...-|..
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 56666666 78888888887766543
No 382
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=73.30 E-value=6.9 Score=36.12 Aligned_cols=51 Identities=12% Similarity=0.232 Sum_probs=24.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 710 CRNGRMKEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 710 ~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.+.|+.+.|.+++.+..+ +.|+ ...|..++....+.|+++.|.+.+++..+
T Consensus 6 ~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 6 AESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred cccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 344455555555555444 2222 23444444444455555555555555544
No 383
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=72.17 E-value=82 Score=31.30 Aligned_cols=124 Identities=12% Similarity=0.105 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003451 680 FARAEDVLREILAKGIKPDIISYNTVIFAYC------RNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEA 753 (819)
Q Consensus 680 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 753 (819)
++++..++++....+ .|.+......|.++- ..-+|.....+|+-+.. +.|++++-.+-..+..+..-.+.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHHHHHhhhHHhH
Confidence 445556666555543 245444444443332 12246666666666655 445554322223344444445667
Q ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHH
Q 003451 754 LDVVRYMIKQG-CKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 754 ~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
+.+++.+.+.+ +.--...+..-++.+.+.|+.+||...|++++++.++..+-.
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~ 402 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERA 402 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence 77777776542 111122233456667788888888888888888877765544
No 384
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.76 E-value=1e+02 Score=29.94 Aligned_cols=87 Identities=13% Similarity=0.068 Sum_probs=43.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----H
Q 003451 671 MYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASY-----A 745 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-----~ 745 (819)
|.+++..+++.++....-+--+.--+.-..+...-|-.|.+.|....+.++-..-...--.-+...|..+++.| .
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 55666677777666654443321111123344444445666777666666666655421111112344444433 3
Q ss_pred hcCChHHHHHHH
Q 003451 746 ADSLFVEALDVV 757 (819)
Q Consensus 746 ~~g~~~~A~~~~ 757 (819)
-.|.+++|++++
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 457777776665
No 385
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=71.57 E-value=1.4e+02 Score=31.59 Aligned_cols=92 Identities=8% Similarity=0.039 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH--hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 003451 668 NTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC--RNGRMKEASRIFSEMRDS-GLVPDVITYNTFVASY 744 (819)
Q Consensus 668 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~ 744 (819)
+.++.-+.+.|-.++|...+..+... .+++...|..++..-. ..-+..-++++|+.|... | -|+..|..+...-
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e 540 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEE 540 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhh
Confidence 44555556666666666666666654 3445555555553221 111256666777776653 4 4555666555555
Q ss_pred HhcCChHHHHHHHHHHHH
Q 003451 745 AADSLFVEALDVVRYMIK 762 (819)
Q Consensus 745 ~~~g~~~~A~~~~~~~~~ 762 (819)
...|..+.+-.++.++.+
T Consensus 541 ~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 541 LPLGRPENCGQIYWRAMK 558 (568)
T ss_pred ccCCCcccccHHHHHHHH
Confidence 566766666666666554
No 386
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.55 E-value=3.1e+02 Score=35.55 Aligned_cols=322 Identities=9% Similarity=0.034 Sum_probs=165.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003451 459 TLLAVFGQNGMDSEVSGVFKEMKRAGF--IPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR 536 (819)
Q Consensus 459 ~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 536 (819)
.+..+-.+.+.+..|.-.++.-..... .-...-|..+...|...+++|...-+...-.. +...+.. +-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~q-il~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQQ-ILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHHH-HHHHHh
Confidence 444566677888888888777311100 01122344445588888988888777664221 2233333 334567
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHH
Q 003451 537 GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERA 616 (819)
Q Consensus 537 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 616 (819)
.|+|..|...|+.+.+.+ ++...+++.++......+.++..+...+-......+.....++.-+.+-.+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 899999999999999864 3336678878877777888888777665554433222222233333444566666655555
Q ss_pred HHHHHHcCCCCCHHHHHH--HHHHHHh--cCChHHHHHHHHHHhhC--------CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 003451 617 FLELKKKGFSPDIPTLNA--MISIYGR--RQMVAKTNEILHFMNDS--------GFTPS-LTTYNTLMYMYSRSENFARA 683 (819)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~--l~~~~~~--~~~~~~A~~~~~~~~~~--------~~~p~-~~~~~~l~~~~~~~g~~~~A 683 (819)
.. ++ +...|.. ++....+ ..+.-.-.+.++.+.+. +..-+ ...|..++....-. +.+.-
T Consensus 1541 l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~ 1612 (2382)
T KOG0890|consen 1541 LS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENS 1612 (2382)
T ss_pred hh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHH
Confidence 44 11 2222222 2222221 11111111222222221 11100 12233333332211 11111
Q ss_pred HHHHHHHH-HCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-----HHHHHHHHHHHHhcCChHHH
Q 003451 684 EDVLREIL-AKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD----SGLVPD-----VITYNTFVASYAADSLFVEA 753 (819)
Q Consensus 684 ~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~-----~~~~~~l~~~~~~~g~~~~A 753 (819)
.+.+.... ......+...|..-+. +.+..-.+.+-.-.+++ ....|+ ..+|...+.....+|.++.|
T Consensus 1613 ~~~l~~~s~~~~s~~~sd~W~~Rl~---~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNRLE---RTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHhhccCccccccccchhHHHHHH---HhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 11111110 0001111222322221 12222223222222221 111221 25888899888889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCC
Q 003451 754 LDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 754 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
...+-++.+.+ -+.++...+..++..|+...|+.++++.++++-.
T Consensus 1690 ~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1690 QNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 99998888854 3345667888899999999999999999866433
No 387
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=71.34 E-value=1.4 Score=38.36 Aligned_cols=84 Identities=19% Similarity=0.234 Sum_probs=56.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 003451 285 LISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGL 364 (819)
Q Consensus 285 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 364 (819)
++..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34555666777777788888887665567788888899999888888888887622 12333456666677777
Q ss_pred HHHHHHHHHHH
Q 003451 365 LEEAMELKTQM 375 (819)
Q Consensus 365 ~~~A~~~~~~m 375 (819)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 77776655543
No 388
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.16 E-value=3.2e+02 Score=35.48 Aligned_cols=104 Identities=9% Similarity=0.057 Sum_probs=65.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------H-
Q 003451 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN--------Q- 769 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~- 769 (819)
..+|...++.....|.++.|...+-++.+.+ . +..+...+..+...|+-..|+.++++-++.. .|+ +
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~-~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKN-FPDLHTPYTDTPQ 1745 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh-cccccCCccccch
Confidence 5677778888888888888888887777754 2 3456666777888888888998888887542 222 1
Q ss_pred ----HHHH----HHHHHHHhcCC--HhHHHHHHHHhhhcCCCCCHHH
Q 003451 770 ----NTYN----SIVDGYCKLNQ--RYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 770 ----~~~~----~l~~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
.+.. .+..-....|+ .+.-.+.|+.+.+..|+-...+
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~h 1792 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKH 1792 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCce
Confidence 1111 11111122232 3445677777788777554443
No 389
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=70.94 E-value=8.8 Score=21.92 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 736 TYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.|..++..+...|++++|...++..++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 445566666666666666666666654
No 390
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=70.73 E-value=1.7e+02 Score=32.60 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=18.3
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 003451 349 IVTYNSLISAYARDGLLEEAMELKTQM 375 (819)
Q Consensus 349 ~~~~~~li~~~~~~g~~~~A~~~~~~m 375 (819)
..-|+ .+..+.-.|.++.|.+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 45565 677888889999999988543
No 391
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=70.70 E-value=14 Score=22.93 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCHhHHHHH--HHHhhhcCC
Q 003451 772 YNSIVDGYCKLNQRYEAITF--VNNLSKLDP 800 (819)
Q Consensus 772 ~~~l~~~~~~~g~~~~A~~~--~~~~~~~~p 800 (819)
+..++..+...|++++|+++ ++-+..+++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 34555566666666666666 335544444
No 392
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=70.66 E-value=5.9 Score=40.96 Aligned_cols=103 Identities=17% Similarity=0.117 Sum_probs=61.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC
Q 003451 671 MYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI-TYNTFVASYAADS 748 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g 748 (819)
+.-+.+.++++.|..++.++++. .|+ +..|..=..++.+.+++..|+.=+.++++. .|+.. .|..-+.++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHH
Confidence 34455666777777777777764 454 333333346666777777777766666663 34332 4444445566666
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003451 749 LFVEALDVVRYMIKQGCKPNQNTYNSIVDGY 779 (819)
Q Consensus 749 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 779 (819)
++.+|...++.... +.|+..-....+.-|
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 67777777776665 566655555555444
No 393
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.99 E-value=35 Score=32.08 Aligned_cols=49 Identities=14% Similarity=0.204 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhhcC
Q 003451 770 NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAKKWT 819 (819)
Q Consensus 770 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~~~~~ 819 (819)
..+.+...++...|++.++++....++...|.+-...|.+--...+ -||
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa-~Wn 279 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAA-VWN 279 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-hcC
Confidence 3455667778889999999999999999999997777766544433 554
No 394
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.53 E-value=1.2e+02 Score=30.03 Aligned_cols=53 Identities=15% Similarity=0.227 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003451 204 FDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMG 257 (819)
Q Consensus 204 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 257 (819)
+......+..++.+|+...-.++|+..+++..+.|+- +...|-.=++.+.+..
T Consensus 295 ~~~~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i-~l~~yLr~VR~lsReQ 347 (365)
T KOG2391|consen 295 IECTAPLYKQILECYALDLAIEDAIYSLGKSLRDGVI-DLDQYLRHVRLLSREQ 347 (365)
T ss_pred hhccchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCee-eHHHHHHHHHHHHHHH
Confidence 3445567888999999888888888899998888754 6666666666665543
No 395
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=69.24 E-value=12 Score=26.82 Aligned_cols=30 Identities=13% Similarity=0.149 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 733 DVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 733 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
|.......+.+|...|++++|.++++.+.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444555566666666666666655543
No 396
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.86 E-value=15 Score=27.52 Aligned_cols=44 Identities=18% Similarity=0.124 Sum_probs=17.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHH
Q 003451 677 SENFARAEDVLREILAKGIKPD--IISYNTVIFAYCRNGRMKEASR 720 (819)
Q Consensus 677 ~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 720 (819)
..+.++|+..|+.+++.-..+. -.++..++.+|+..|++.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443311111 1233334444444444444444
No 397
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.66 E-value=18 Score=27.11 Aligned_cols=49 Identities=10% Similarity=0.083 Sum_probs=26.4
Q ss_pred hcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 003451 746 ADSLFVEALDVVRYMIKQGCKP--NQNTYNSIVDGYCKLNQRYEAITFVNN 794 (819)
Q Consensus 746 ~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 794 (819)
...+.++|+..++.+++.-..+ -..++..++.+|+..|++.+++++.-.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666665532222 124445555666666666666655443
No 398
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.05 E-value=1.2e+02 Score=29.15 Aligned_cols=208 Identities=13% Similarity=0.113 Sum_probs=114.4
Q ss_pred CCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHhCC-----
Q 003451 519 GVTPDLSTYNAVLAA-LARGGMWEQSEKIFAEMKGGRCKPNE---LTYSSLLHAYANGREIDQMLALSEEIYSGI----- 589 (819)
Q Consensus 519 ~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 589 (819)
+..||+..-+..-.. -.+..+.++|+.-|++..+..-.-.. .+...++..+.+.+++++....|.+++...
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 345555544433221 12345788999999888764322222 344456677888888888888888876421
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC----
Q 003451 590 IEPHAVLLKTLILVYSKSDLLMDTERAFLELKKK--GFSPD---IPTLNAMISIYGRRQMVAKTNEILHFMNDSGF---- 660 (819)
Q Consensus 590 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---- 660 (819)
-.-+....+.+++......+.+--..+|+.-++. ....+ -.+-.-|...|...+.+.+..++++++.....
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 1223445566666655555555555555443321 00111 12234566677777777777777777765411
Q ss_pred CCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHH----HHHHhcCCHHHHHHHHHHHH
Q 003451 661 TPS-------LTTYNTLMYMYSRSENFARAEDVLREILAK-GIKPDIISYNTVI----FAYCRNGRMKEASRIFSEMR 726 (819)
Q Consensus 661 ~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~ 726 (819)
..| ...|..-+..|...++-.+-..++++.+.. .--|.+.....+- .+..+.|++++|-.-|-++.
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 111 134555567777777777777777776532 1234444433321 23446677777765444443
No 399
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.86 E-value=69 Score=29.71 Aligned_cols=123 Identities=11% Similarity=0.126 Sum_probs=76.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 003451 667 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD----VITYNTFVA 742 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~ 742 (819)
.+..+..+.+.+.+++|+...++-++.+ +-|...-..++..||-.|+|++|..-++-.-+ +.|+ ...|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHHHHHHHH
Confidence 4455667788899999999999888763 33667777888999999999999999888776 3433 345555554
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHH-HHHH-HhcCCHhH-HHHHHHHhhhcCCCC
Q 003451 743 SYAADSLFVEALDVVRYMIKQGCKPN-----QNTYNSI-VDGY-CKLNQRYE-AITFVNNLSKLDPHV 802 (819)
Q Consensus 743 ~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l-~~~~-~~~g~~~~-A~~~~~~~~~~~p~~ 802 (819)
+ +.+-++..+-+..|. ...|... ..+. +..+.-.+ +..+-+.+.+..|.+
T Consensus 81 ~----------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 81 C----------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred H----------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 3 112223333333442 2334432 2222 23343444 555566677777765
No 400
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=67.62 E-value=1.7e+02 Score=30.90 Aligned_cols=38 Identities=11% Similarity=-0.056 Sum_probs=25.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003451 533 ALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYAN 571 (819)
Q Consensus 533 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 571 (819)
.|...|+.-.|.+.|.+.... +..++..|.-+..+|..
T Consensus 344 ~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 344 LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 455677777777777776543 35566777777777653
No 401
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=66.06 E-value=2.4e+02 Score=32.08 Aligned_cols=108 Identities=12% Similarity=-0.011 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHH
Q 003451 680 FARAEDVLREILAKGIKPDIISYNTVIFAY-CRNGRMKEASRIFSEMRDSGLVPDVI-TYNTFVASYAADSLFVEALDVV 757 (819)
Q Consensus 680 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~ 757 (819)
++.|...|.+.......+...+.......+ ...++++.++.+|+.....|.. +.. .|...+..-...|+...|..++
T Consensus 442 F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~-~iag~Wle~~~lE~~~g~~~~~R~~~ 520 (881)
T KOG0128|consen 442 FNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG-SIAGKWLEAINLEREYGDGPSARKVL 520 (881)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc-hHHHHHHHHHhHHHHhCCchhHHHHH
Confidence 455666665554432222223333333222 2456678888888877765433 233 4555555555667777777777
Q ss_pred HHHHHcCCCCCH--HHHHHHHHHHHhcCCHhHH
Q 003451 758 RYMIKQGCKPNQ--NTYNSIVDGYCKLNQRYEA 788 (819)
Q Consensus 758 ~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A 788 (819)
+.+...-..|+. .++..+...-...|.++.+
T Consensus 521 R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~ 553 (881)
T KOG0128|consen 521 RKAYSQVVDPEDALEVLEFFRRFEREYGTLESF 553 (881)
T ss_pred HHHHhcCcCchhHHHHHHHHHHHHhccccHHHH
Confidence 777654344431 2232333333344555444
No 402
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.91 E-value=17 Score=33.63 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 003451 765 CKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 765 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 800 (819)
..|++.+|..++..+...|+.++|..+.+++...-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 356666666666666666666666666666666665
No 403
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=65.62 E-value=1.1e+02 Score=27.83 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=30.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCC--------------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003451 635 MISIYGRRQMVAKTNEILHFMNDSGF--------------TPSLTTYNTLMYMYSRSENFARAEDVLR 688 (819)
Q Consensus 635 l~~~~~~~~~~~~A~~~~~~~~~~~~--------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 688 (819)
++..|.+..++.++.++++.|.+..+ .+.-...|.....+.+.|.++.|..+++
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 34455666667777777776665321 1222334555556666666666666665
No 404
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=65.12 E-value=1.4e+02 Score=29.13 Aligned_cols=103 Identities=16% Similarity=0.105 Sum_probs=50.5
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhcCCHH
Q 003451 326 KCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMV----EIGITPDVFTYTTLLSGFEKAGKDE 401 (819)
Q Consensus 326 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~pd~~~~~~l~~~~~~~g~~~ 401 (819)
+++++++|.+++..- ...+.+.|+...|.++..-++ +.+.+.|......++..+...+.-+
T Consensus 2 ~~kky~eAidLL~~G---------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG---------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE 66 (260)
T ss_dssp HTT-HHHHHHHHHHH---------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-
T ss_pred ccccHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc
Confidence 466777777776543 233445555555554443333 2355555555555555554443221
Q ss_pred -HHHHHHHHHH---HCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003451 402 -SAMKVFEEMR---SAG--CKPNICTFNALIKMHGNRGNFVEMMKVFD 443 (819)
Q Consensus 402 -~A~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 443 (819)
+-.++.+.++ +.+ -.-|......+...|.+.|++.+|...|-
T Consensus 67 p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 67 PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 2222333322 121 12356777788888888888888887663
No 405
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=65.06 E-value=1.5e+02 Score=29.21 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHccCCHHHH
Q 003451 419 ICTFNALIKMHGNRGNFVEM 438 (819)
Q Consensus 419 ~~~~~~l~~~~~~~g~~~~A 438 (819)
..+|.-|+.++|..|+.+-.
T Consensus 321 lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHhhhHHHHHHhcCChHHHH
Confidence 34566677777777765543
No 406
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=64.95 E-value=1.3e+02 Score=28.64 Aligned_cols=110 Identities=12% Similarity=0.131 Sum_probs=63.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC-CCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003451 674 YSRSENFARAEDVLREILAKGIK-PDI--ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLF 750 (819)
Q Consensus 674 ~~~~g~~~~A~~~~~~~~~~~~~-p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 750 (819)
....|+++.|+++.+-+++.|.. |+. .++-+++ .++.........+.|-..++.....+.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v--------aeev~~~A~~~~~ag~~~e~~~~~~~~--------- 155 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV--------AEEVANAALKAASAGESVEPYFLRVFL--------- 155 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHH--------HHHHHHHHHHHHHcCCCCChHHHHHHH---------
Confidence 46778888888888888887653 221 1222221 145555555555555444443322221
Q ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHH---------hcCCHhHHHHHHHHhhhcCCCCCHHHHH
Q 003451 751 VEALDVVRYMIKQGCKPN---QNTYNSIVDGYC---------KLNQRYEAITFVNNLSKLDPHVTKELEC 808 (819)
Q Consensus 751 ~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 808 (819)
.+...---|| ...|..++..+. ..++...|..+++++.+++|+.-..+..
T Consensus 156 --------~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i 217 (230)
T PHA02537 156 --------DLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDI 217 (230)
T ss_pred --------HHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHH
Confidence 1111101222 344556666662 4567889999999999999987776533
No 407
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=64.89 E-value=25 Score=27.77 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=24.6
Q ss_pred HhcCCHHHHHHHHHHHHHCC---CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 710 CRNGRMKEASRIFSEMRDSG---LVPD-----VITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 710 ~~~g~~~~A~~~~~~~~~~g---~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.+.|++.+|.+.+.+..+.. .... ......++......|++++|+..++++++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35566666655555544321 1111 11222344444555555555555555543
No 408
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.62 E-value=1.3e+02 Score=28.42 Aligned_cols=183 Identities=13% Similarity=0.270 Sum_probs=87.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCH-HHHHHHHHHHHccC
Q 003451 499 YSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMK----GGRCKPNE-LTYSSLLHAYANGR 573 (819)
Q Consensus 499 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~~~~~~~-~~~~~l~~~~~~~~ 573 (819)
+.-.+.+++|.++|.+... .|.-.++|..|-..|.+.- +.|-+-|. .+|.....+| +..
T Consensus 24 fgg~~k~eeAadl~~~Aan---------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~ 87 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAAN---------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKV 87 (288)
T ss_pred cCCCcchHHHHHHHHHHHH---------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hcc
Confidence 3444577777777766543 2333334444444333322 12222232 2344444444 334
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CChHHHHHHH
Q 003451 574 EIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRR-QMVAKTNEIL 652 (819)
Q Consensus 574 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~ 652 (819)
++++|...++..+ ..|...|++..|-.....+ ...|... .++++|+..+
T Consensus 88 ~~~eAv~cL~~ai---------------eIyt~~Grf~~aAk~~~~i---------------aEiyEsdl~d~ekaI~~Y 137 (288)
T KOG1586|consen 88 DPEEAVNCLEKAI---------------EIYTDMGRFTMAAKHHIEI---------------AEIYESDLQDFEKAIAHY 137 (288)
T ss_pred ChHHHHHHHHHHH---------------HHHHhhhHHHHHHhhhhhH---------------HHHHhhhHHHHHHHHHHH
Confidence 6677666655543 3456666665554443332 2222221 3455555555
Q ss_pred HHHhhC--CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH----HHHHHh--cCCHHHHHHH
Q 003451 653 HFMNDS--GFT---PSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTV----IFAYCR--NGRMKEASRI 721 (819)
Q Consensus 653 ~~~~~~--~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l----~~~~~~--~g~~~~A~~~ 721 (819)
+..-+. |-. .....+.-+...-...+++.+|+++|+++.......+..-|..- -.++|+ ..+.-.+...
T Consensus 138 E~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~A 217 (288)
T KOG1586|consen 138 EQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRA 217 (288)
T ss_pred HHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHH
Confidence 544432 101 11122333334446678899999999998866444333223211 122222 2454555666
Q ss_pred HHHHHH
Q 003451 722 FSEMRD 727 (819)
Q Consensus 722 ~~~~~~ 727 (819)
+++..+
T Consensus 218 Leky~~ 223 (288)
T KOG1586|consen 218 LEKYQE 223 (288)
T ss_pred HHHHHh
Confidence 666655
No 409
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.45 E-value=53 Score=32.58 Aligned_cols=100 Identities=19% Similarity=0.181 Sum_probs=74.6
Q ss_pred CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003451 661 TPSLT--TYNTLMYMYSRSENFARAEDVLREILAKGI-KP--DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI 735 (819)
Q Consensus 661 ~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 735 (819)
.|+.. .|.-=++-|.+.+++..|...|.+-++... .| +.+.|+.-..+....|++..|+.=....+. +.|+..
T Consensus 76 ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~ 153 (390)
T KOG0551|consen 76 EPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHL 153 (390)
T ss_pred ChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchh
Confidence 45443 456667778889999999999998886532 22 367777777777788889888888888777 566653
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 736 -TYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 736 -~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.|..-+.++....++++|..+++...+
T Consensus 154 Ka~~R~Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 154 KAYIRGAKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 666667778888888999988888754
No 410
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=63.42 E-value=74 Score=25.27 Aligned_cols=51 Identities=16% Similarity=0.297 Sum_probs=36.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003451 358 AYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAG 414 (819)
Q Consensus 358 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 414 (819)
.+...|+|++|..+.+.+ +.||...|..|.. .+.|..+.+..-+..+..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 466788899888887765 4778877766543 36777777777777777765
No 411
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.04 E-value=96 Score=30.09 Aligned_cols=57 Identities=7% Similarity=-0.019 Sum_probs=22.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 003451 391 LSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINK 447 (819)
Q Consensus 391 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 447 (819)
|.+++..+++.++....-+.-+..-+....+...-|-.|.|.++...+.++-....+
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 344444444444444333322221111222233333344455555544444444443
No 412
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=62.38 E-value=1.2e+02 Score=31.76 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=38.2
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 003451 638 IYGRRQMVAKTNEILHFMNDSGFTPSLT--TYNTLMYMYS--RSENFARAEDVLREILAK 693 (819)
Q Consensus 638 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 693 (819)
.+.+.+++..|.++++.+.+. ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445788899999999988876 555544 3455555554 355788888888887754
No 413
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=62.02 E-value=59 Score=25.63 Aligned_cols=53 Identities=19% Similarity=0.160 Sum_probs=28.5
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003451 675 SRSENFARAEDVLREILAK----GIKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 675 ~~~g~~~~A~~~~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 727 (819)
.+.|++.+|.+.+.+..+. +.... ......+...+...|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567777776555554422 11110 12223344556667777777777777665
No 414
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=61.69 E-value=65 Score=26.79 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=26.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 719 SRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 719 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.+-+..+....+.|++.+....+.++.+-+++..|+++++-...
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444555666666666666666666666666666666553
No 415
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=61.45 E-value=1.4e+02 Score=27.97 Aligned_cols=63 Identities=24% Similarity=0.327 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHhHHH--HHHHHHHhcCCHHHHHHHHHHH
Q 003451 661 TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKP---DIISYN--TVIFAYCRNGRMKEASRIFSEM 725 (819)
Q Consensus 661 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~--~l~~~~~~~g~~~~A~~~~~~~ 725 (819)
.++..-+|.|+--|.-...+.+|.+.|..-. |+.+ |..++. .-|......|++++|.+....+
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHh
Confidence 3444445555555555555555555444322 2222 222221 2334445556666666555554
No 416
>PRK11619 lytic murein transglycosylase; Provisional
Probab=60.71 E-value=2.9e+02 Score=31.29 Aligned_cols=333 Identities=9% Similarity=0.044 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 003451 280 YTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAY 359 (819)
Q Consensus 280 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 359 (819)
..|..... ..+.|+...+.++...+...-. .....|..|.... .....++....+++-.. .+.....-......+
T Consensus 35 ~~f~~A~~-a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~--~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 35 QRYQQIKQ-AWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRANPT--LPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHHH-HHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHCCC--CchHHHHHHHHHHHH
Confidence 34444444 4566888888888877653322 1222333332221 22356666666655321 122222233445566
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003451 360 ARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMM 439 (819)
Q Consensus 360 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 439 (819)
.+.+++...++++.. .+.+...-+....+....|+.++|......+-..|.. .....+.++..+.+.|.+
T Consensus 110 a~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~l---- 179 (644)
T PRK11619 110 ARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQ---- 179 (644)
T ss_pred HHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCC----
Confidence 677888877763321 2445556677788888999988887777766555432 234445555554444432
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003451 440 KVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERD-TFNTLISAYSRCGSFDQAMSIYKRMLEA 518 (819)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 518 (819)
.+...|.- +......|+...|..+...+ .++.. ....++..+. +...+...+...
T Consensus 180 ------------t~~d~w~R-~~~al~~~~~~lA~~l~~~l-----~~~~~~~a~a~~al~~---~p~~~~~~~~~~--- 235 (644)
T PRK11619 180 ------------DPLAYLER-IRLAMKAGNTGLVTYLAKQL-----PADYQTIASALIKLQN---DPNTVETFARTT--- 235 (644)
T ss_pred ------------CHHHHHHH-HHHHHHCCCHHHHHHHHHhc-----ChhHHHHHHHHHHHHH---CHHHHHHHhhcc---
Confidence 22233333 33445667777777766654 12222 2333333332 233333332221
Q ss_pred CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 003451 519 GVTPDL---STYNAVLAALARGGMWEQSEKIFAEMKGGR-CKPNE--LTYSSLLHAYANGREIDQMLALSEEIYSGIIEP 592 (819)
Q Consensus 519 ~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 592 (819)
.++. ......+.-+ ...+.+.|..++....... ..+.. ..+..+.......+...++...+....... .
T Consensus 236 --~~~~~~~~~~~~~l~Rl-ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~ 310 (644)
T PRK11619 236 --GPTDFTRQMAAVAFASV-ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--Q 310 (644)
T ss_pred --CCChhhHHHHHHHHHHH-HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--C
Confidence 1222 1122222233 3456689999999875443 22222 223333322333322456666665544322 2
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 003451 593 HAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMND 657 (819)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 657 (819)
+......-+......++++.+...+..|.... .-...-.--+..++...|+.++|...|+.+..
T Consensus 311 ~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 311 STSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 44445555556668899999999998876532 22444556677777779999999999999754
No 417
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=60.42 E-value=1.8e+02 Score=28.63 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003451 380 ITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSA-GCKPNICTFNALIKMHGNRGNFVEMMKVFDE 444 (819)
Q Consensus 380 ~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 444 (819)
-.++..+...+++.+++.+++..-.++++..... +...|...|..+|+...+.|+..-..++.++
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 3445556666677777777777777776665544 4445666677777777777766555555443
No 418
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=59.67 E-value=1e+02 Score=32.09 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--C----CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 701 SYNTVIFAYCRNGRMKEASRIFSEMRDS--G----LVP-DVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 701 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+...|++.++-.|++..|+++++.+.-. + +.+ ...++..++-+|...++|.+|++.+...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788888888888888775321 1 111 113677778888888888888888888763
No 419
>PHA02875 ankyrin repeat protein; Provisional
Probab=59.66 E-value=2.2e+02 Score=30.12 Aligned_cols=16 Identities=13% Similarity=-0.082 Sum_probs=7.6
Q ss_pred HHHHhCCChHHHHHHH
Q 003451 322 DVYGKCRRPKEAMQVL 337 (819)
Q Consensus 322 ~~~~~~g~~~~A~~~~ 337 (819)
...++.|+.+.+..++
T Consensus 73 ~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 73 HDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHCCCHHHHHHHH
Confidence 3344555555444443
No 420
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.50 E-value=13 Score=36.77 Aligned_cols=88 Identities=15% Similarity=0.087 Sum_probs=42.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHH
Q 003451 677 SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI-TYNTFVASYAADSLFVEALD 755 (819)
Q Consensus 677 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~ 755 (819)
.|.++.|++.|...+..+ .+....|..-..++.+.++...|++=+....+ +.||.. .|..-..+....|+|++|.+
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHHH
Confidence 444555555555555432 22344444444455555555555555555544 333332 23333334444555555555
Q ss_pred HHHHHHHcCCCC
Q 003451 756 VVRYMIKQGCKP 767 (819)
Q Consensus 756 ~~~~~~~~~~~p 767 (819)
.+..+.+.++.+
T Consensus 204 dl~~a~kld~dE 215 (377)
T KOG1308|consen 204 DLALACKLDYDE 215 (377)
T ss_pred HHHHHHhccccH
Confidence 555555544444
No 421
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=59.49 E-value=2.2e+02 Score=29.38 Aligned_cols=95 Identities=14% Similarity=0.186 Sum_probs=50.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------HHHHH
Q 003451 706 IFAYCRNGRMKEASRIFSEMRDS-GLVPDV----ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-------QNTYN 773 (819)
Q Consensus 706 ~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~ 773 (819)
...|-..|+...-..++...... .+..|. ...+.++..|...+.++.|.+++.+.. -|+ ...+.
T Consensus 176 ~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~----~pe~~snne~ARY~y 251 (493)
T KOG2581|consen 176 YLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV----YPEAASNNEWARYLY 251 (493)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc----CccccccHHHHHHHH
Confidence 34444555555555555544431 122232 234455566666677777766666553 221 12222
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhhcCCCCCH
Q 003451 774 SIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 774 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
.++..-.-++++..|.+.+-.+..+.|....
T Consensus 252 Y~GrIkaiqldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 252 YLGRIKAIQLDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred HHhhHHHhhcchhHHHHHHHHHHHhCcchhh
Confidence 4445555667777777777777777776433
No 422
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=58.12 E-value=37 Score=32.98 Aligned_cols=61 Identities=15% Similarity=0.077 Sum_probs=45.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHH
Q 003451 744 YAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
..+.|+.++|.++++.+.+ +.| ++.+...++...-..++.-+|-..|-+++...|.+++..
T Consensus 126 ~~~~Gk~ekA~~lfeHAla--laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALA--LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred HHhccchHHHHHHHHHHHh--cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 4567788888888888877 456 566776777766677778888888888888888877654
No 423
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.06 E-value=48 Score=32.69 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003451 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREA 227 (819)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 227 (819)
....+..++.+++...-.++|.-.+++..+.|.- +...|-.=++.++|..-+-+|
T Consensus 298 ~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i-~l~~yLr~VR~lsReQF~~ra 352 (365)
T KOG2391|consen 298 TAPLYKQILECYALDLAIEDAIYSLGKSLRDGVI-DLDQYLRHVRLLSREQFILRA 352 (365)
T ss_pred cchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCee-eHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999888889898899988887754 667777777777765444333
No 424
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.02 E-value=1.3e+02 Score=29.92 Aligned_cols=96 Identities=15% Similarity=0.014 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHH
Q 003451 629 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGF-TP--SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNT 704 (819)
Q Consensus 629 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 704 (819)
...|--=.+-|.+..++..|...|.+-+.... .| +.+.|+.-..+-...|++..|+.=-...+.. +|+ ...|.-
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R 158 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIR 158 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--Ccchhhhhhh
Confidence 34566667778889999999999988776532 23 3455777777777788999888887777764 454 455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 003451 705 VIFAYCRNGRMKEASRIFSEMR 726 (819)
Q Consensus 705 l~~~~~~~g~~~~A~~~~~~~~ 726 (819)
=..++....++++|..+.++..
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhh
Confidence 5667777788888888777754
No 425
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.89 E-value=1.9e+02 Score=28.15 Aligned_cols=92 Identities=11% Similarity=0.086 Sum_probs=47.0
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHH----HHcCCCCCHHHHHHH
Q 003451 181 SMLGKEGKVSVAASLLHGLHKDGFDIDVY-------AYTSLITTYASNGRYREAVMVFKKM----EEEGCKPTLITYNVI 249 (819)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~l 249 (819)
+-..+.+++++|...+.++...|...+.. +...+...|.+.|++..-.+..... ....-...+....++
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL 90 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL 90 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 33445667777777777777666554443 3344566677777765544443322 121112233344555
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHh
Q 003451 250 LNVYGKMGMPWNKIMALVEGMKS 272 (819)
Q Consensus 250 l~~~~~~g~~~~~a~~~~~~~~~ 272 (819)
+..+......++.-+.+.+...+
T Consensus 91 iekf~~~~dsl~dqi~v~~~~ie 113 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIE 113 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHH
Confidence 55544443344554444444443
No 426
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=56.81 E-value=1.7e+02 Score=29.28 Aligned_cols=75 Identities=16% Similarity=0.326 Sum_probs=44.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC---CCCCCHhHHH--HHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHH-HHHHH
Q 003451 672 YMYSRSENFARAEDVLREILAK---GIKPDIISYN--TVIFAYCRNGRMKEASRIFSEMRD-----SGLVPDVI-TYNTF 740 (819)
Q Consensus 672 ~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~-~~~~l 740 (819)
....+.++.++|+++++++.+. .-.|+.+.|. .++.++...|+.+++.+.+++..+ .|+.|+.. .|+.+
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~l 162 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSL 162 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHH
Confidence 3345556788888888877642 1234544443 344666677888888887777766 35555443 34444
Q ss_pred HHHHHh
Q 003451 741 VASYAA 746 (819)
Q Consensus 741 ~~~~~~ 746 (819)
..-|.+
T Consensus 163 ssqYyk 168 (380)
T KOG2908|consen 163 SSQYYK 168 (380)
T ss_pred HHHHHH
Confidence 444443
No 427
>PRK12798 chemotaxis protein; Reviewed
Probab=56.57 E-value=2.5e+02 Score=29.22 Aligned_cols=194 Identities=9% Similarity=0.018 Sum_probs=112.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHhcCCH
Q 003451 606 KSDLLMDTERAFLELKKKGFSPDIPTLNAMISIY-GRRQMVAKTNEILHFMNDSGFTPSLT----TYNTLMYMYSRSENF 680 (819)
Q Consensus 606 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~ 680 (819)
-.|+-.++.+.+..+......+....+-.|+.+- ....+..+|+++|+...-. -|... ...--+......|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 3588888888888877666666677777776654 4556788888888877653 34432 234444556778888
Q ss_pred HHHHHHHHHHHHCCCCCCHh---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHH
Q 003451 681 ARAEDVLREILAKGIKPDII---SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV--ITYNTFVASYAADSLFVEALD 755 (819)
Q Consensus 681 ~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~ 755 (819)
+++..+-.+.... +.-++. .+..+...+.+.++-..- ..+..++.. +.|+. ..|..+...-.-.|+.+-|.-
T Consensus 202 ~rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~ 278 (421)
T PRK12798 202 DKFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSF-MDPERQRELYLRIARAALIDGKTELARF 278 (421)
T ss_pred HHHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8877776666543 222221 222233344444432211 224444432 33332 477788888888888888888
Q ss_pred HHHHHHHcCCCCC---H--HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHH
Q 003451 756 VVRYMIKQGCKPN---Q--NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 756 ~~~~~~~~~~~p~---~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
.-+++....-..+ . ..|.... -.-..+.++|.+.+..+....-...+..
T Consensus 279 As~~A~~L~~~~~~~~~ra~LY~aaa--~v~s~~~~~al~~L~~I~~~~L~~~Dr~ 332 (421)
T PRK12798 279 ASERALKLADPDSADAARARLYRGAA--LVASDDAESALEELSQIDRDKLSERDRA 332 (421)
T ss_pred HHHHHHHhccCCCcchHHHHHHHHHH--ccCcccHHHHHHHHhcCChhhCChhhHH
Confidence 8888776431111 1 1222222 2345667788777777765554444443
No 428
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.38 E-value=3e+02 Score=29.97 Aligned_cols=94 Identities=13% Similarity=0.079 Sum_probs=48.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhc
Q 003451 707 FAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA-ADSLFVEALDVVRYMIKQ---GCKPNQNTYNSIVDGYCKL 782 (819)
Q Consensus 707 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~ 782 (819)
..+.+.|-+..|.++.+-+......-|+.....++..|+ ++.+|+--+++++..... -.-||...-..|+..|...
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~ 429 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRK 429 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhc
Confidence 344566667777777666665333334555555555554 445565555555554321 1234444444555555544
Q ss_pred CC---HhHHHHHHHHhhhcCC
Q 003451 783 NQ---RYEAITFVNNLSKLDP 800 (819)
Q Consensus 783 g~---~~~A~~~~~~~~~~~p 800 (819)
.. .+.|...+.++++.-|
T Consensus 430 ~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 430 NEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred CChhhHHHHHHHHHHHHHhCc
Confidence 33 4555555555555544
No 429
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=56.30 E-value=2.1e+02 Score=28.16 Aligned_cols=66 Identities=9% Similarity=0.199 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003451 484 GFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA-GVTPDLSTYNAVLAALARGGMWEQSEKIFAE 549 (819)
Q Consensus 484 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 549 (819)
+-.++..+...++..++..+++..-.++++..... +..-|...|..+++.....|+..-..++.++
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 34456667777777777777777777777766654 4555677777777777777776655555543
No 430
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.21 E-value=27 Score=24.96 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=32.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 003451 749 LFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 749 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
.+++..++++.+.. .+-|...-..++.+|...|++++|.++++++.+
T Consensus 5 ~~~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34555556666554 233555566889999999999999999998765
No 431
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=55.10 E-value=26 Score=36.49 Aligned_cols=103 Identities=14% Similarity=0.105 Sum_probs=71.8
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcC
Q 003451 636 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTY-NTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNG 713 (819)
Q Consensus 636 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 713 (819)
++-....+.++.|..++.++++. .|+...| ..-..++.+.+++..|+.=+.++++.. |+ ...|..=+.++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 44456678889999999988875 5655544 333478888999999988888888753 43 445555556677777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003451 714 RMKEASRIFSEMRDSGLVPDVITYNTFVASY 744 (819)
Q Consensus 714 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 744 (819)
.+.+|...|+.... +.|+..-....+.-|
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 88888888887776 667666555544433
No 432
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=53.98 E-value=1.2e+02 Score=24.58 Aligned_cols=77 Identities=18% Similarity=0.186 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 003451 294 LHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKT 373 (819)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 373 (819)
..+||..+.+.+...+. ....+--.-+..+.+.|++++|+. .-.. ...||...|-.|.. .+.|.-+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl---~~~~-~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALL---LPQC-HCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHH---HHTT-S--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHH---hccc-CCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 34555555555554432 111111122333445555555511 1111 13444444444332 24455555554444
Q ss_pred HHHH
Q 003451 374 QMVE 377 (819)
Q Consensus 374 ~m~~ 377 (819)
++..
T Consensus 94 rla~ 97 (116)
T PF09477_consen 94 RLAS 97 (116)
T ss_dssp HHCT
T ss_pred HHHh
Confidence 4443
No 433
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=53.45 E-value=1.6e+02 Score=30.81 Aligned_cols=57 Identities=12% Similarity=-0.002 Sum_probs=42.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--hcCChHHHHHHHHHHhhC
Q 003451 601 ILVYSKSDLLMDTERAFLELKKKGFSPDIP--TLNAMISIYG--RRQMVAKTNEILHFMNDS 658 (819)
Q Consensus 601 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~A~~~~~~~~~~ 658 (819)
+......+++..|.+++..+..+ ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44556889999999999999987 555444 4555556664 477899999999987764
No 434
>PHA02940 hypothetical protein; Provisional
Probab=53.33 E-value=2e+02 Score=27.07 Aligned_cols=75 Identities=8% Similarity=-0.058 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 003451 736 TYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIA 815 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~ 815 (819)
+...++.-|.+.++.++-..+.+++.+. +.| ..+.--..-+++.+.+-++.+++.+-+-+..+|+.|...+.
T Consensus 144 tv~~la~~yvq~vk~d~r~~~a~~l~ke-Ls~-------~~d~~enepdle~d~keie~~lE~~~dl~rGtY~vL~~ald 215 (315)
T PHA02940 144 TVILLAGRYVQDVKKDDRRTIANKLSKE-LSW-------TIDYQENEPDLESDFKEIEEELEEKDDLSRGTYKVLKRALD 215 (315)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHhh-hhH-------HHHHHhcCcchhhhHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence 3445555666777766666555555431 111 11111133457888888888888888888888888888887
Q ss_pred hhc
Q 003451 816 KKW 818 (819)
Q Consensus 816 ~~~ 818 (819)
++|
T Consensus 216 ~m~ 218 (315)
T PHA02940 216 LMK 218 (315)
T ss_pred HHH
Confidence 776
No 435
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.86 E-value=59 Score=26.54 Aligned_cols=26 Identities=31% Similarity=0.646 Sum_probs=19.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003451 352 YNSLISAYARDGLLEEAMELKTQMVE 377 (819)
Q Consensus 352 ~~~li~~~~~~g~~~~A~~~~~~m~~ 377 (819)
|..|+..|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66777777777777777777777665
No 436
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=52.17 E-value=91 Score=24.39 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCC-CHHHHHHHHHHHH
Q 003451 754 LDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV-TKELECKLSDRIA 815 (819)
Q Consensus 754 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~~l~~~l~ 815 (819)
+.-++..++ -.| |...-..++..+...|++++|++.+-++.+.++.. ....-..|++.+.
T Consensus 8 ~~al~~~~a--~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~ 69 (90)
T PF14561_consen 8 IAALEAALA--ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFE 69 (90)
T ss_dssp HHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHH
No 437
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=51.60 E-value=3.6e+02 Score=30.36 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=16.6
Q ss_pred HhcCCHhHHHHHHHHhhhcCCCC
Q 003451 780 CKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 780 ~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
.-.+++.+|+...+.|.++.|..
T Consensus 377 VLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 377 VLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred hhccCHHHHHHHHHHHhccCCce
Confidence 34567777888888887777765
No 438
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=51.38 E-value=2.5e+02 Score=27.67 Aligned_cols=20 Identities=15% Similarity=0.438 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhcCChHHHH
Q 003451 490 DTFNTLISAYSRCGSFDQAM 509 (819)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~A~ 509 (819)
.+|..|+.++|..|+.+..+
T Consensus 322 K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhHHHHHHhcCChHHHHH
Confidence 35677777777777766443
No 439
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=50.71 E-value=1.1e+02 Score=27.50 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHCCCCCCH--H-----HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 715 MKEASRIFSEMRDSGLVPDV--I-----TYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 715 ~~~A~~~~~~~~~~g~~p~~--~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.+.|+.+|+.+.+.--.|.. . .-...+..|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 66777788777664222211 1 122344456777777777777777765
No 440
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=49.57 E-value=3e+02 Score=27.98 Aligned_cols=120 Identities=8% Similarity=0.014 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHH
Q 003451 680 FARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA---DSLFVEALDV 756 (819)
Q Consensus 680 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~ 756 (819)
.+.-+.+++++++.+. .+...+..++..+.+..+.++..+-++++..... -+...|..++..... .-.+++...+
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP-GSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 4566788899888743 4677888888999999999999999999998522 256677766665443 2346666666
Q ss_pred HHHHHHc------CC------CCC-----HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCC
Q 003451 757 VRYMIKQ------GC------KPN-----QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 757 ~~~~~~~------~~------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
|.+.++. |. .++ ..++..+...+..+|-.+.|...++-+++.+--
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 6665431 11 011 133445555567999999999999999998763
No 441
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=49.33 E-value=60 Score=21.72 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=17.0
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 003451 291 RGSLHEEAAGVFEEMKLAGFSPDKVTYNALL 321 (819)
Q Consensus 291 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 321 (819)
+.|..+++..++++|.+.|+.-+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3455555566666666666555555555444
No 442
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=48.05 E-value=1.3e+02 Score=23.32 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=17.6
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003451 501 RCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWE 541 (819)
Q Consensus 501 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 541 (819)
..|+.+.|.+++..+. + ....|..++.++...|.-+
T Consensus 48 ~~g~~~~ar~LL~~L~-r----g~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-Q----KEGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-c----CCcHHHHHHHHHHHcCchh
Confidence 3355555555555555 3 2234445555555554433
No 443
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=47.49 E-value=42 Score=19.38 Aligned_cols=18 Identities=11% Similarity=-0.058 Sum_probs=10.8
Q ss_pred CCHhHHHHHHHHhhhcCC
Q 003451 783 NQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 783 g~~~~A~~~~~~~~~~~p 800 (819)
|+.+.|..+++++++..|
T Consensus 1 ~~~~~~r~i~e~~l~~~~ 18 (33)
T smart00386 1 GDIERARKIYERALEKFP 18 (33)
T ss_pred CcHHHHHHHHHHHHHHCC
Confidence 345566666666666655
No 444
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=47.11 E-value=28 Score=35.49 Aligned_cols=6 Identities=33% Similarity=0.495 Sum_probs=2.2
Q ss_pred CCCCCC
Q 003451 11 LPTPPP 16 (819)
Q Consensus 11 ~~~p~~ 16 (819)
|+.|||
T Consensus 274 Pchpkp 279 (666)
T KOG4825|consen 274 PCHPKP 279 (666)
T ss_pred CCCCCC
Confidence 333333
No 445
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=46.97 E-value=1.1e+02 Score=29.65 Aligned_cols=54 Identities=11% Similarity=0.085 Sum_probs=28.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHhcCCHhHHHHHH
Q 003451 739 TFVASYAADSLFVEALDVVRYMIK----QGCKP-NQNTYNSIVDGYCKLNQRYEAITFV 792 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 792 (819)
.++..|...|++++|.++++.+.. .|... ...+...+..++.+.|+.++.+.+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 455556666666666666666532 12111 3344555556666666666555543
No 446
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=46.09 E-value=3.9e+02 Score=28.26 Aligned_cols=120 Identities=9% Similarity=0.003 Sum_probs=70.6
Q ss_pred cCCCHHHHHHHHHH-HHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 003451 291 RGSLHEEAAGVFEE-MKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAM 369 (819)
Q Consensus 291 ~~g~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 369 (819)
..|+...|-+-+.. +.+..-.|+.....+ ..+...|+++.+...+....+. +.....+...+++...+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 45666655544333 333322344433333 3345678888888777666544 3345566777777777888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003451 370 ELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAG 414 (819)
Q Consensus 370 ~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 414 (819)
.+-.-|....+. |...........-..|-++++...|+++...+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 888877776554 22222222223334567777877777776543
No 447
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=45.99 E-value=1.5e+02 Score=26.76 Aligned_cols=49 Identities=18% Similarity=0.181 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHHCCCCCC--Hh-----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003451 679 NFARAEDVLREILAKGIKPD--II-----SYNTVIFAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 679 ~~~~A~~~~~~~~~~~~~p~--~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 727 (819)
-++.|+.+|+.+.+.-..|. .. .-...+-.|.+.|.+++|.+++++...
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 37889999999886532321 11 122334678999999999999999876
No 448
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.70 E-value=1.9e+02 Score=24.48 Aligned_cols=80 Identities=13% Similarity=0.090 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHh
Q 003451 713 GRMKEASRIFSEMRDS-----GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRY 786 (819)
Q Consensus 713 g~~~~A~~~~~~~~~~-----g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 786 (819)
|....-..++++.... ....|. -|..+.-.|+..- +++.++++.|...|+-- -+..|...+..+...|+++
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~-RylkiWi~ya~~~--~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~ 116 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDE-RYLKIWIKYADLS--SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFK 116 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-H-HHHHHHHHHHTTB--SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCH-HHHHHHHHHHHHc--cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHH
Confidence 4444555555555542 122233 3333333344432 38888888888877766 4667778888888889999
Q ss_pred HHHHHHHHh
Q 003451 787 EAITFVNNL 795 (819)
Q Consensus 787 ~A~~~~~~~ 795 (819)
+|.++++..
T Consensus 117 ~A~~I~~~G 125 (126)
T PF08311_consen 117 KADEIYQLG 125 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 998888765
No 449
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.11 E-value=49 Score=32.49 Aligned_cols=34 Identities=9% Similarity=0.139 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHH
Q 003451 774 SIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELE 807 (819)
Q Consensus 774 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 807 (819)
..+..-.+.||+++|+.+++++.++|......++
T Consensus 262 ~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 262 QAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4444444555555555555555555544444433
No 450
>PRK13342 recombination factor protein RarA; Reviewed
Probab=45.03 E-value=4.1e+02 Score=28.23 Aligned_cols=47 Identities=23% Similarity=0.257 Sum_probs=27.6
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003451 352 YNSLISAYAR---DGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAG 398 (819)
Q Consensus 352 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g 398 (819)
+..++.++.+ .++.+.|+..+..|.+.|..|....-..++.++...|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 3444444444 3677777888888877777666555444444443333
No 451
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.78 E-value=92 Score=20.83 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=11.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003451 362 DGLLEEAMELKTQMVEIGITPDVFTYT 388 (819)
Q Consensus 362 ~g~~~~A~~~~~~m~~~g~~pd~~~~~ 388 (819)
.|.+.++..++++|.+.|+.-+...|.
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHH
Confidence 344444444444444444444443333
No 452
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.69 E-value=35 Score=33.95 Aligned_cols=90 Identities=12% Similarity=0.029 Sum_probs=52.3
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHH
Q 003451 641 RRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEAS 719 (819)
Q Consensus 641 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 719 (819)
..|.+++|++.+...++.. ++....|..-..++.+.+....|++=+...+.. .|| ..-|-.-..+..-.|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 3456677777776666653 344444555556666667777777666666653 333 223333334445567777777
Q ss_pred HHHHHHHHCCCCCC
Q 003451 720 RIFSEMRDSGLVPD 733 (819)
Q Consensus 720 ~~~~~~~~~g~~p~ 733 (819)
+.+....+.++.+.
T Consensus 203 ~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 203 HDLALACKLDYDEA 216 (377)
T ss_pred HHHHHHHhccccHH
Confidence 77777776555443
No 453
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=44.61 E-value=3.4e+02 Score=27.19 Aligned_cols=97 Identities=16% Similarity=0.221 Sum_probs=54.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----
Q 003451 699 IISYNTVIFAYCRNGRMKEASRIFSEMRD----SGLVPDVITYN-TFVASYAADSLFVEALDVVRYMIKQGCKPNQ---- 769 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---- 769 (819)
...+.....-||+-|+.+.|.+.+.+-.+ .|...|...+. .++-.|....-..+-++..+.+++.|-.-+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 34555666777777777777777666544 35555554333 3333344444456666666777776655543
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 003451 770 NTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 770 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
.+|..+ -|....++.+|..+|-....
T Consensus 184 KvY~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 223222 22344567777776666543
No 454
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=43.44 E-value=3.2e+02 Score=26.65 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=28.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHHhcCCHHHH
Q 003451 355 LISAYARDGLLEEAMELKTQMVEIGITPDVFTY-------TTLLSGFEKAGKDESA 403 (819)
Q Consensus 355 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~-------~~l~~~~~~~g~~~~A 403 (819)
+.+...+.+++++|+..+.+....|...|..+. ..+...|...|+...-
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 455566677777777777777777766554433 2344444455544433
No 455
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=41.87 E-value=75 Score=33.22 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCH
Q 003451 772 YNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 772 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
+...+...+|.+++.-|..+.+++++++|..+.
T Consensus 303 Lr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 303 LRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 334444555666677777777777766665543
No 456
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=41.61 E-value=3.1e+02 Score=25.96 Aligned_cols=138 Identities=16% Similarity=0.222 Sum_probs=78.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 003451 632 LNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR 711 (819)
Q Consensus 632 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 711 (819)
...-+..|.+.-++.-|-...+++.+ |- .+ .+.+--|.+..+-+--.++.+-....++.-+..-...++ +..
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIiE----PI-QS-RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta 204 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKIIE----PI-QS-RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTA 204 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhhh----hH-Hh-hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhc
Confidence 33344455555555555555554443 21 11 122223455555444444555444444544444555544 457
Q ss_pred cCCHHHHHHHHHHHHHC-CC-----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003451 712 NGRMKEASRIFSEMRDS-GL-----------VPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGY 779 (819)
Q Consensus 712 ~g~~~~A~~~~~~~~~~-g~-----------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 779 (819)
.|++..|+.-++.-... |+ .|.+.....++. +|..+++++|.+++.++.+.|+.|... ...+.+.+
T Consensus 205 ~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~-~~~~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 205 QGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQ-ACLKRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred cchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHH-HHHhccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 89999999988776542 22 244555555554 456678999999999999999998533 23444433
No 457
>PHA02875 ankyrin repeat protein; Provisional
Probab=41.43 E-value=4.5e+02 Score=27.77 Aligned_cols=116 Identities=12% Similarity=0.055 Sum_probs=49.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHh--HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHH
Q 003451 286 ISCCRRGSLHEEAAGVFEEMKLAGFSPDKVT--YNALLDVYGKCRRPKEAMQVLREMKINGCLPS---IVTYNSLISAYA 360 (819)
Q Consensus 286 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~ 360 (819)
+...+..|+.+ +++.+.+.|..++... ..+.+...+..|+.+-+.-++ +.|..++ ...++.| ...+
T Consensus 106 L~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll----~~g~~~~~~d~~g~TpL-~~A~ 176 (413)
T PHA02875 106 LHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI----DHKACLDIEDCCGCTPL-IIAM 176 (413)
T ss_pred HHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hcCCCCCCCCCCCCCHH-HHHH
Confidence 33344555554 4444455555544321 122344445666655444433 3333222 1222222 2333
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003451 361 RDGLLEEAMELKTQMVEIGITPDVFT---YTTLLSGFEKAGKDESAMKVFEEMRSAGCKPN 418 (819)
Q Consensus 361 ~~g~~~~A~~~~~~m~~~g~~pd~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 418 (819)
..|+.+ +.+.+.+.|..++... ..+.+...+..|+.+ +.+.+.+.|..++
T Consensus 177 ~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 177 AKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred HcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 445543 3344455555554321 123333344455543 3344444555444
No 458
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=40.69 E-value=24 Score=29.63 Aligned_cols=34 Identities=32% Similarity=0.498 Sum_probs=22.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003451 217 TYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNV 252 (819)
Q Consensus 217 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 252 (819)
.+...|.-.+|..+|++|++.|-+||. |+.|+..
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 344555666788888888888877664 5555543
No 459
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=40.42 E-value=1.3e+02 Score=27.65 Aligned_cols=33 Identities=18% Similarity=0.062 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 730 LVPDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 730 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
..|+..+|..++..+...|+.++|..+.+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555566666666555555554
No 460
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.32 E-value=1.5e+02 Score=28.64 Aligned_cols=57 Identities=12% Similarity=0.043 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003451 704 TVIFAYCRNGRMKEASRIFSEMRDS----GL-VPDVITYNTFVASYAADSLFVEALDVVRYM 760 (819)
Q Consensus 704 ~l~~~~~~~g~~~~A~~~~~~~~~~----g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 760 (819)
.++.-|.+.|++++|.++|+.+... |- .+...+...+..++.+.|+.++.+.+.-++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4445556666666666666655321 11 122234445555566666666655554443
No 461
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=39.76 E-value=2.3e+02 Score=23.90 Aligned_cols=42 Identities=12% Similarity=0.225 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003451 191 VAASLLHGLHKDGFDI-DVYAYTSLITTYASNGRYREAVMVFK 232 (819)
Q Consensus 191 ~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 232 (819)
.+.++|..|...|+.. -...|..-...+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555444332 22345555555555555555555554
No 462
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=39.59 E-value=70 Score=19.25 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003451 750 FVEALDVVRYMIKQGCKPNQNTYNSI 775 (819)
Q Consensus 750 ~~~A~~~~~~~~~~~~~p~~~~~~~l 775 (819)
++.|..+|++.+. +.|+..+|...
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wiky 26 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWIKY 26 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHHHH
Confidence 4555555665555 34555555443
No 463
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=39.18 E-value=1.6e+02 Score=25.47 Aligned_cols=85 Identities=14% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003451 136 LLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGK-VSVAASLLHGLHKDGFDIDVYAYTSL 214 (819)
Q Consensus 136 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 214 (819)
+.-++..+...+.+...+.+++.+.......-....+...++.++++++.... --.+..+|.-+.+.+...+..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q ss_pred HHHHHH
Q 003451 215 ITTYAS 220 (819)
Q Consensus 215 i~~~~~ 220 (819)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
No 464
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=38.79 E-value=3.8e+02 Score=26.16 Aligned_cols=25 Identities=20% Similarity=0.040 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHH
Q 003451 278 DSYTFNTLISCCRRGSLHEEAAGVF 302 (819)
Q Consensus 278 ~~~~~~~ll~~~~~~g~~~~a~~~~ 302 (819)
|......+...+.+.|++.+|+.-|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4455555566666666666665544
No 465
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=38.72 E-value=6.8e+02 Score=29.00 Aligned_cols=85 Identities=13% Similarity=0.014 Sum_probs=48.1
Q ss_pred ChHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------CCCHhHHHHHHHHH
Q 003451 644 MVAKTNEILHFMND-SGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGI-------------KPDIISYNTVIFAY 709 (819)
Q Consensus 644 ~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~p~~~~~~~l~~~~ 709 (819)
..++..+.++.+.+ .|+..+......+.. ...|++.+|+.++++.+..+. ..+...+..++..+
T Consensus 179 s~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL 256 (830)
T PRK07003 179 PAGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL 256 (830)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34556666666543 466666666655544 347899999999888764321 11222233333322
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC
Q 003451 710 CRNGRMKEASRIFSEMRDSGLV 731 (819)
Q Consensus 710 ~~~g~~~~A~~~~~~~~~~g~~ 731 (819)
..|+..+++.+++++...|+.
T Consensus 257 -~~~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 257 -AAGDGPEILAVADEMALRSLS 277 (830)
T ss_pred -HcCCHHHHHHHHHHHHHhCCC
Confidence 335666666666666665554
No 466
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=38.41 E-value=1.3e+03 Score=32.11 Aligned_cols=412 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHccCCH
Q 003451 361 RDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGK-DESAMKVFEEMRSAG----CKPNICTFNALIKMHGNRGNF 435 (819)
Q Consensus 361 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~ 435 (819)
+.|....++..|-++... +.|-...-..|+....+.-. +-.++.+++...... ...+.....++.+.|......
T Consensus 2392 q~~~~pnvln~~v~s~~~-~~~~~~lpp~Li~yl~kt~~~wh~~I~lLE~~~~~~~~~~~~~~~~~~dsl~elY~~L~E~ 2470 (3550)
T KOG0889|consen 2392 QQGCRPNVLNALVESLVK-IVPPIELPPHLIKYLGKTYNLWHTSIRLLEDHQSNKEMENTKGDESCLDSLAELYRSLNEE 2470 (3550)
T ss_pred hhccchhHHHHHHHHHHh-hccCCCCCHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhHH
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003451 436 VEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA----GFIPERDTFNTLISAYSRCGSFDQAMSI 511 (819)
Q Consensus 436 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 511 (819)
|.-.-++++ .-...=+.....|.+.|.+++|..+|++.... ..+-+..-|..-.+.+.++-.--.=+++
T Consensus 2471 Dm~~Glwrr-------r~~~~eT~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~~~~~~~~~Ey~lWed~WI~Ca~eL~QWdv 2543 (3550)
T KOG0889|consen 2471 DMFYGLWRR-------RAKFPETMVALSYEQLGFWEEAQSLYEKAQVKAREGAIPYSESEYKLWEDHWIRCASELQQWDV 2543 (3550)
T ss_pred HHHHHHHHH-------hhccHHHHHHHHHHHhhhHHHHhhHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHccCC--------HHHHHH
Q 003451 512 YKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKP---NELTYSSLLHAYANGRE--------IDQMLA 580 (819)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~~~--------~~~a~~ 580 (819)
+-+.-+ ....+..++.+..+.-+|..-.+.+....+...+. ...+|...+..+....+ ++++..
T Consensus 2544 l~e~~k-----~~~~~~llle~aWrlsdw~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~e~~~ 2618 (3550)
T KOG0889|consen 2544 LTEFGK-----HEGNYELLLECAWRLSDWNDQKDALEQKAKSLSDVPGFRKELYDAFLALQKKNSNGVGEFERLIGEAIQ 2618 (3550)
T ss_pred HHHHHh-----ccCCceeeeehhccCCcchhHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHh
Q 003451 581 LSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKK---GFSPDIPTLNAMISIY-GRRQMVAKTNEILHFMN 656 (819)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~ 656 (819)
+--.-......-.......++.++.+.-...+|..++..+.+. +......-+..++... -+.-...+-...|..+.
T Consensus 2619 l~i~~w~~lP~~v~~~h~~lL~~~QqivEl~Ea~~I~s~l~~~n~~n~~~~~~d~Ksil~~Wr~RlP~~~Dd~~~Wsdl~ 2698 (3550)
T KOG0889|consen 2619 LAIREWRQLPERVNHGHVPLLQAFQQIVELQEAAQIYSDLNDGNVQNLDNKAQDIKSILQTWRDRLPNVWDDMNQWSDLI 2698 (3550)
T ss_pred HHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHhhcCCCcchhHHHHHHHH
Q ss_pred hCCCCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003451 657 DSGFTPSLTTYNTLMYMYSR-----SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV 731 (819)
Q Consensus 657 ~~~~~p~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 731 (819)
.- -...|..+..+|.- ...-..-. .-.|+.--+.+.+..+....++|-++.+...+.++-. .
T Consensus 2699 ~W----Rq~~y~~I~~~~~~~~~~~~~~~ns~~------~~~Gyhe~A~~in~fakvArkh~l~~vcl~~L~~iyt---l 2765 (3550)
T KOG0889|consen 2699 TW----RQHAYSMINKAYLPLVPYKQNASNSNN------LYRGYHELAWAINRFAKVARKHGLPDVCLNQLAKIYT---L 2765 (3550)
T ss_pred HH----HHHHHHHHHHHhcccchhhhccCCcch------HHHhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhc---c
Q ss_pred CCHH------HHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 003451 732 PDVI------TYNTFVASYAADS-LFVEALDVVRYMIKQGCKP--NQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 732 p~~~------~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
|+.. .+..=+.+|...- ....++++++.---..+.- ..+.++.-+....+.|+.++|-..|..+.++
T Consensus 2766 p~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi 2841 (3550)
T KOG0889|consen 2766 PNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQI 2841 (3550)
T ss_pred CcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHH
No 467
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.22 E-value=66 Score=31.62 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 003451 317 YNALLDVYGKCRRPKEAMQVLREMKINGCL 346 (819)
Q Consensus 317 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 346 (819)
|+..|..-.+.||+++|+.+++|.++.|..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345566666666666666666666655543
No 468
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=37.97 E-value=4.2e+02 Score=31.68 Aligned_cols=197 Identities=14% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH-HcC--CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHH-----
Q 003451 213 SLITTYASNGRYREAVMVFKKME-EEG--CKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNT----- 284 (819)
Q Consensus 213 ~li~~~~~~g~~~~A~~~~~~m~-~~~--~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~----- 284 (819)
..++-+...++|.+|..+.++-+ ..+ +.-+...|-.=+..+.++=.+.+-.-.++..+.+.++.-..+.-..
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~tmY~~~~~~~~~ 778 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKTMYKDTYPPSSE 778 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccccccccccccccc
Q ss_pred -----HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCC--ChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 003451 285 -----LISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCR--RPKEAMQVLREMKINGCLPSIVTYNSLIS 357 (819)
Q Consensus 285 -----ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 357 (819)
-.......++.....+.+...... ......-...++.+|.+.+ ++++|+.++.++.+.+...-..+...|+-
T Consensus 779 ~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~f 857 (928)
T PF04762_consen 779 AQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLCF 857 (928)
T ss_pred cccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHhee
Q ss_pred HHHHcCCHHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHhc-------------CCHHHHHHHHHHH
Q 003451 358 AYARDGLLEEAMELKTQ----MVEIGITPDVFTYTTLLSGFEKA-------------GKDESAMKVFEEM 410 (819)
Q Consensus 358 ~~~~~g~~~~A~~~~~~----m~~~g~~pd~~~~~~l~~~~~~~-------------g~~~~A~~~~~~~ 410 (819)
.---+.-++.|+.+|+- |....-+-|+.-|.-+++-+-+. +++++|++-+.++
T Consensus 858 LvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 858 LVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred eccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHHhh
No 469
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=37.74 E-value=3.6e+02 Score=27.39 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003451 716 KEASRIFSEMRDSGLVPDVI----TYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYC 780 (819)
Q Consensus 716 ~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 780 (819)
+++..++..++.. .|+.. .|..++......|.+++.+.+|++++..|.+|-...-..+++.+-
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4555666665552 34442 455566666667777777777777777777775555555555543
No 470
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=37.61 E-value=4.9e+02 Score=27.05 Aligned_cols=53 Identities=13% Similarity=-0.065 Sum_probs=32.2
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHH----HHHHHHHHHh--cCCHHHHHHHHHH
Q 003451 637 SIYGRRQMVAKTNEILHFMNDSGFTPSLTT----YNTLMYMYSR--SENFARAEDVLRE 689 (819)
Q Consensus 637 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~----~~~l~~~~~~--~g~~~~A~~~~~~ 689 (819)
..+.+.+++..|.++|+++.+...++.... |..+..+|.. .-++++|.+.+++
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 345567788888888888887654444332 3344444432 3466777777765
No 471
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=37.58 E-value=3.5e+02 Score=25.53 Aligned_cols=98 Identities=13% Similarity=0.103 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 003451 627 PDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTP---SLTTY--NTLMYMYSRSENFARAEDVLREILAKGIKPDIIS 701 (819)
Q Consensus 627 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 701 (819)
+...-+|.|+--|.-...+.+|.+.|..- .|+.+ |..++ ..-+......|+.++|++..+++...-+.-|...
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Confidence 34444555555554444456666655442 33433 33333 2345556778888888888777653323334333
Q ss_pred HHHHHH----HHHhcCCHHHHHHHHHHHH
Q 003451 702 YNTVIF----AYCRNGRMKEASRIFSEMR 726 (819)
Q Consensus 702 ~~~l~~----~~~~~g~~~~A~~~~~~~~ 726 (819)
+..|.. =+.+.|..++|+++.+.=.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 333221 1345666777777666543
No 472
>PF15469 Sec5: Exocyst complex component Sec5
Probab=37.46 E-value=3.2e+02 Score=24.85 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=16.8
Q ss_pred CCHhHHHHHHHHhhhcCCCCCHHH
Q 003451 783 NQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 783 g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
...++..+.+..+.+++++.+++.
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~ 176 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIW 176 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHH
Confidence 456777777777777777666654
No 473
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=36.71 E-value=4.3e+02 Score=26.82 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003451 680 FARAEDVLREILAKGIKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA 745 (819)
Q Consensus 680 ~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 745 (819)
.++...+++++++. -|+ +..|.+++......|.+++++.+|++++..|..|=...-..++..+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34556666666653 334 34566666777777777777777777777777665555444444433
No 474
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=36.63 E-value=1.1e+02 Score=30.10 Aligned_cols=80 Identities=6% Similarity=0.055 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHH-HHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHHHHH
Q 003451 733 DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNS-IVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKL 810 (819)
Q Consensus 733 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l 810 (819)
|...|...+.--.+.|.+.+.-.++.++.. ..| |...|.. -..-+...++++.++.++.+.+..+|+++...+.-.
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~--khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLT--KHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Q ss_pred HHHH
Q 003451 811 SDRI 814 (819)
Q Consensus 811 ~~~l 814 (819)
--.+
T Consensus 184 r~El 187 (435)
T COG5191 184 RMEL 187 (435)
T ss_pred HHHH
No 475
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=36.60 E-value=5e+02 Score=26.89 Aligned_cols=211 Identities=8% Similarity=-0.012 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH---------------------
Q 003451 318 NALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMV--------------------- 376 (819)
Q Consensus 318 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------------------- 376 (819)
..........++.+.-..++++ .+-.+.++-.+...+.++|+.+.|.+++++.+
T Consensus 14 q~~F~~~v~~~Dp~~l~~ll~~-----~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g 88 (360)
T PF04910_consen 14 QEQFYAAVQSHDPNALINLLQK-----NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSG 88 (360)
T ss_pred HHHHHHHHHccCHHHHHHHHHH-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC
Q ss_pred ----HcCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHhhC
Q 003451 377 ----EIGITPDVFTYTTL---LSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHG-NRGNFVEMMKVFDEINKC 448 (819)
Q Consensus 377 ----~~g~~pd~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~ 448 (819)
.....-|...|.++ |..+.+.|-+..|.++.+-+...+..-|......+|+.|+ +.++++--+++.+.....
T Consensus 89 ~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~ 168 (360)
T PF04910_consen 89 NCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK 168 (360)
T ss_pred ccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh
Q ss_pred CCCC----CHHHHHHHHHHHHhcCCh---------------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003451 449 NCKP----DIVTWNTLLAVFGQNGMD---------------SEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAM 509 (819)
Q Consensus 449 ~~~~----~~~~~~~l~~~~~~~g~~---------------~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 509 (819)
.... -+..--...-++...++. ++|.+.+.+.... -+.....|++.+.-..+..-..
T Consensus 169 ~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~----fP~vl~~Ll~~l~~~~~~~~~~ 244 (360)
T PF04910_consen 169 CYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR----FPWVLVPLLDKLGISPDSSVSN 244 (360)
T ss_pred hhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH----hHHHHHHHHHHhccccchhhhc
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003451 510 SIYKRMLEAGVTPDLSTYNAVLAALARG 537 (819)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 537 (819)
.-.-.-...+..+.......++..|+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~ll~~lYv~R 272 (360)
T PF04910_consen 245 HPHFSPSSWSSEPPSDSLKLLTELYVER 272 (360)
T ss_pred CCCCcccccccCCchhHHHHHHHHHHHH
No 476
>PRK15313 autotransport protein MisL; Provisional
Probab=36.58 E-value=44 Score=38.31 Aligned_cols=45 Identities=13% Similarity=0.191 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCch
Q 003451 7 LPLLLPTPPPAKPLFLTQTNHHNLPPPSPPQQQTTPSASPTTISP 51 (819)
Q Consensus 7 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 51 (819)
++++.|+||.|.+|....+..+.+.+|.|..|..||+.+|.+..|
T Consensus 558 ~~p~~P~~p~p~~P~~p~p~~~~P~d~~p~~p~~p~p~~p~P~~p 602 (955)
T PRK15313 558 IEPDEPIIPDPVDPVIPDPVIPDPVDPDPVDPVIPDPVIPDPVDP 602 (955)
T ss_pred CCCCCCCCCCCCCcccccccCCCCCccccccccCCccccCCccCc
No 477
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=36.30 E-value=61 Score=20.43 Aligned_cols=30 Identities=10% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 003451 769 QNTYNSIVDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 769 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
..+|..|+..-...+++++|..=+++++++
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHH
No 478
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.33 E-value=42 Score=28.27 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=0.0
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 003451 326 KCRRPKEAMQVLREMKINGCLPSIVTYNSLISAY 359 (819)
Q Consensus 326 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 359 (819)
+.|.-.+|..+|++|++.|.+||. |+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
No 479
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=34.73 E-value=4.2e+02 Score=25.43 Aligned_cols=184 Identities=14% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 003451 597 LKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIY-GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYS 675 (819)
Q Consensus 597 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 675 (819)
+..++..+.+.|+++++...++++.+.+...+..-.+.+..+| ...|....+..++..+.+..-.-.......++.-|.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChHHHH
Q 003451 676 RSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYN-TFVASYAADSLFVEAL 754 (819)
Q Consensus 676 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~l~~~~~~~g~~~~A~ 754 (819)
.++-+++... ...+...+=..+.....-.++.-+|.+|.. |..-|. -+...-.+..-.+.|.
T Consensus 84 --------~kie~EL~~~----C~eii~lId~~Lip~~~~~eskvfy~Kmkg-----DyyRYlaE~~~~~~~~~~~~~a~ 146 (236)
T PF00244_consen 84 --------KKIEDELIDI----CNEIIRLIDKSLIPSATSPESKVFYYKMKG-----DYYRYLAEFDSGDEKKEAAEKAL 146 (236)
T ss_dssp --------HHHHHHHHHH----HHHHHHHHHHTCHHHS-SHHHHHHHHHHHH-----HHHHHHHHCTTHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHH----HHHHHHHHHHHHhccccchhHHHHHHHHhc-----cccccccccccchhhHHHHHHHH
Q ss_pred HHHHHHH---HcCCCCCHHHHHHHHHHHH-----hcCCHhHHHHHHHHhhh
Q 003451 755 DVVRYMI---KQGCKPNQNTYNSIVDGYC-----KLNQRYEAITFVNNLSK 797 (819)
Q Consensus 755 ~~~~~~~---~~~~~p~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~ 797 (819)
..|+++. +..+.|...++..|+--|. ..|+.++|..+.+++.+
T Consensus 147 ~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 147 EAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
No 480
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=34.30 E-value=2.6e+02 Score=22.84 Aligned_cols=87 Identities=13% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003451 212 TSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRR 291 (819)
Q Consensus 212 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 291 (819)
++|+.+|... +......+++ .||.-.....-..+.+.| -|..|+..|..
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr-------~~N~C~~~~~e~~L~~~~-----------------------~~~eL~~lY~~ 51 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLR-------LPNYCDLEEVEEVLKEHG-----------------------KYQELVDLYQG 51 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHc-------cCCcCCHHHHHHHHHHcC-----------------------CHHHHHHHHHc
Q ss_pred CCCHHHHHHHHHHHHH-----CCCCCCHHhHHHHHHHHHhCCC
Q 003451 292 GSLHEEAAGVFEEMKL-----AGFSPDKVTYNALLDVYGKCRR 329 (819)
Q Consensus 292 ~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~ 329 (819)
.|.+++|.+++.+... ..-+........++....+.|.
T Consensus 52 kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~iv~yL~~L~~ 94 (108)
T PF10366_consen 52 KGLHRKALELLKKLADEEDSDEEDPFLSGVKETIVQYLQKLGN 94 (108)
T ss_pred cCccHHHHHHHHHHhcccccccccccccCchhHHHHHHHhCCh
No 481
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=34.05 E-value=55 Score=28.66 Aligned_cols=51 Identities=20% Similarity=0.134 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 003451 2 AQNLSLPLLLPTPPPAKPLFLTQTNHHNLPPPSPPQQQTTPSASPTTISPL 52 (819)
Q Consensus 2 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 52 (819)
+++...+.+.++...+.+.-....+.+.++|++|||+.+-.-.-.++..+.
T Consensus 158 ~~~~~a~~p~~~~k~~~~~a~~~~~~~~~pp~pppp~~p~~~t~s~s~~~~ 208 (225)
T KOG3397|consen 158 FQNAAASNPSFLSKIAQPSASSTVSASAPPPPPPPPMAPKMVTRSTSPIVD 208 (225)
T ss_pred hhccccCCCCchhhcCCcccccccCCCCCCCcccCCCCccceecCCCCCCC
No 482
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=33.99 E-value=72 Score=31.25 Aligned_cols=60 Identities=15% Similarity=0.243 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhccCCC
Q 003451 2 AQNLSLPLLLPTPPPAKPLFLTQTNHHNLPPPSPPQQQTTPSASPTTISPLLQDLYNNNS 61 (819)
Q Consensus 2 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 61 (819)
.++--.|..++||-|.|.|.++..+...+..|-+....+.|-++|....|++..+.+...
T Consensus 395 ~E~ggcP~~ie~~VpmPsPl~S~GsslspS~~ASSSlt~~pcSSPV~~k~llGssaSSp~ 454 (561)
T KOG1103|consen 395 TEKGGCPRAIEPAVPMPSPLMSIGSSLSPSLPASSSLTPRPCSSPVKKKPLLGSSASSPA 454 (561)
T ss_pred cccCCCCCCCCCCCCCCCcccccccccCCCCcccccCCCCCCCCccccccccccccCChh
No 483
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=33.61 E-value=2.9e+02 Score=23.28 Aligned_cols=74 Identities=12% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHH
Q 003451 680 FARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI-TYNTFVASYAADSLFVEALDVVR 758 (819)
Q Consensus 680 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~ 758 (819)
++++.+.|..... .+.|+......+..--..++ ..++|..|...|+--... .|...+..+...|++.+|.++++
T Consensus 49 Lerc~~~f~~~~~--YknD~RyLkiWi~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 49 LERCIRYFEDDER--YKNDPRYLKIWLKYADNCDE---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHhhhhhh--hcCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
No 484
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=33.23 E-value=3.3e+02 Score=23.71 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=0.0
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChHH
Q 003451 430 GNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDT--FNTLISAYSRCGSFDQ 507 (819)
Q Consensus 430 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~l~~~~~~~g~~~~ 507 (819)
++.|.+-..++.+.+... +...-|.+.+..++..+ .+.++......+++..
T Consensus 5 sk~g~~~~nL~~w~~fi~---------------------------~~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~ 57 (145)
T PF13762_consen 5 SKLGNVLANLEVWKTFIN---------------------------SHLPYMQEENASQSTKTIFINCILNHLASYQNFSG 57 (145)
T ss_pred ccCcchhhhHHHHHHHHH---------------------------HHHHHhhhcccChhHHHHHHHHHHHHHHHccchHH
Q ss_pred HHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003451 508 AMSIYKRMLEA------GVTPDLSTYNAVLAALARGGM-WEQSEKIFAEMKGGRCKPNELTYSSLLHAYAN 571 (819)
Q Consensus 508 A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 571 (819)
...+++.+... |.. +...|..++.+..+..- ---+..+|.-|++.+.+.+..-|..++.++.+
T Consensus 58 ~v~~L~~l~~l~~~~~~~~~-~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 58 VVSILEHLHFLNTDNIIGWL-DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred HHHHHHHHHHhhHHHHhhhc-ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
No 485
>PHA03211 serine/threonine kinase US3; Provisional
Probab=32.97 E-value=50 Score=35.66 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhh
Q 003451 6 SLPLLLPTPPPAKPLFLTQTNHHNLPPPSPPQQQTTPSASPTTISPLLQ 54 (819)
Q Consensus 6 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 54 (819)
+-|+..++..+-||++.+.+....--||+|++++|++++++.--.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (461)
T PHA03211 22 AVEPETTTRCVFPPETFYNPPRGVCFPPPPEHDPPSPHGARDEAARLCQ 70 (461)
T ss_pred cCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCchhHHHHHHH
No 486
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=32.89 E-value=76 Score=23.77 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 003451 749 LFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 749 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
++++|+.+++++.+.+ ..|++++|+.+|..+++.
T Consensus 2 ~l~kai~Lv~~A~~eD----------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDED----------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHhh----------------HhhhHHHHHHHHHHHHHH
No 487
>PRK09857 putative transposase; Provisional
Probab=32.78 E-value=3.1e+02 Score=27.37 Aligned_cols=100 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003451 670 LMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSL 749 (819)
Q Consensus 670 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 749 (819)
++.-..+.+++.+-...+..+......++.. +..++......|+.++..++++.+.+. ..........++.-+.+.|.
T Consensus 178 ll~k~i~~~dl~~~~~~l~~ll~~~~~~~~~-~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~ 255 (292)
T PRK09857 178 LIQKHIRQRDLMGLVEQMACLLSSGYANDRQ-IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGE 255 (292)
T ss_pred HHHHHcCcHhHHHHHHHHHHHHHhccCCHHH-HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHcCCCCCHHH
Q 003451 750 FVEALDVVRYMIKQGCKPNQNT 771 (819)
Q Consensus 750 ~~~A~~~~~~~~~~~~~p~~~~ 771 (819)
-++++++.++|...|+..+...
T Consensus 256 qe~~~~ia~~ml~~g~~~~~I~ 277 (292)
T PRK09857 256 QSKALHIAKIMLESGVPLADIM 277 (292)
T ss_pred HHHHHHHHHHHHHcCCCHHHHH
No 488
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=32.61 E-value=5.5e+02 Score=31.25 Aligned_cols=158 Identities=11% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHcCCCHHHHHH------HHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHH-------HHHHHCCCCCCHhhHH
Q 003451 287 SCCRRGSLHEEAAG------VFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVL-------REMKINGCLPSIVTYN 353 (819)
Q Consensus 287 ~~~~~~g~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-------~~~~~~g~~~~~~~~~ 353 (819)
......|.+.+|.+ +++.....-.+.....|..|...+.+.|+.++|...- +++.......+...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCCH
Q 003451 354 SLISAYARDGLLEEAMELKTQMVEI-------GITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAG-------CKPNI 419 (819)
Q Consensus 354 ~li~~~~~~g~~~~A~~~~~~m~~~-------g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~ 419 (819)
.+.-.....++...|+..+.+.+.. ..+|...+++.+-..+...++.+.|.+..+.+.+.. --.+.
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHH
Q 003451 420 CTFNALIKMHGNRGNFVEMMKVFDE 444 (819)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~A~~~~~~ 444 (819)
.++..+.+.+...+++..|....+.
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHhh
No 489
>PRK09857 putative transposase; Provisional
Probab=32.54 E-value=4.7e+02 Score=26.12 Aligned_cols=104 Identities=10% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 003451 281 TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYA 360 (819)
Q Consensus 281 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 360 (819)
....++.-..+.+++.+-.+.+..+...+ ..+...+..++.-..+.++.++..++++.+.+. .+.......++..-+.
T Consensus 174 ~~l~ll~k~i~~~dl~~~~~~l~~ll~~~-~~~~~~~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~ 251 (292)
T PRK09857 174 ALLELIQKHIRQRDLMGLVEQMACLLSSG-YANDRQIKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLR 251 (292)
T ss_pred HHHHHHHHHcCcHhHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHH
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003451 361 RDGLLEEAMELKTQMVEIGITPDVFT 386 (819)
Q Consensus 361 ~~g~~~~A~~~~~~m~~~g~~pd~~~ 386 (819)
+.|.-++++++..+|...|+..+...
T Consensus 252 qeG~qe~~~~ia~~ml~~g~~~~~I~ 277 (292)
T PRK09857 252 QEGEQSKALHIAKIMLESGVPLADIM 277 (292)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHH
No 490
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=32.47 E-value=3.1e+02 Score=23.16 Aligned_cols=75 Identities=8% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHH
Q 003451 715 MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVN 793 (819)
Q Consensus 715 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 793 (819)
++++.+.|..... ...|+.-....+.---..++ +.+++..|...|+-- -+..|...+..+-..|++.+|.++++
T Consensus 49 Lerc~~~f~~~~~--YknD~RyLkiWi~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 49 LERCIRYFEDDER--YKNDPRYLKIWLKYADNCDE---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHhhhhhh--hcCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q ss_pred H
Q 003451 794 N 794 (819)
Q Consensus 794 ~ 794 (819)
.
T Consensus 124 ~ 124 (125)
T smart00777 124 L 124 (125)
T ss_pred c
No 491
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.36 E-value=6.5e+02 Score=26.91 Aligned_cols=387 Identities=10% Similarity=0.006 Sum_probs=0.0
Q ss_pred HHHHHHccC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHHC-CCCCCH-----HHHH
Q 003451 425 LIKMHGNRG--NFVEMMKVFDEINKCNCKPDIVTWNTLLAV---FGQNGMDSEVSGVFKEMKRA-GFIPER-----DTFN 493 (819)
Q Consensus 425 l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~-~~~~~~-----~~~~ 493 (819)
+.+.+...| ++..+++.++.+....++--+..-..|--+ +.-..+.+.|..-++..... ...|+. .++.
T Consensus 13 lAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~S 92 (629)
T KOG2300|consen 13 LAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAAS 92 (629)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHH
Q ss_pred HHHHHHHhcC-ChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003451 494 TLISAYSRCG-SFDQAMSIYKRMLEA---GVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAY 569 (819)
Q Consensus 494 ~l~~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 569 (819)
.|...|+... .+..+..++++.++. .+...-.....|+..+.-..++..|.+++.---... .+-...|..++..+
T Consensus 93 lLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sA-d~~~~~ylr~~ftl 171 (629)
T KOG2300|consen 93 LLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESA-DHICFPYLRMLFTL 171 (629)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcccccc-chhhhHHHHHHHHH
Q ss_pred Hc---------cCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------
Q 003451 570 AN---------GREIDQMLALSEEIYSGIIEPH-------AVLLKTLILVYSKSDLLMDTERAFLELKKK---------- 623 (819)
Q Consensus 570 ~~---------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------- 623 (819)
.. ..++..+.....++.+...... ...+..-+..|...|+...+...++++.+.
T Consensus 172 s~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~ 251 (629)
T KOG2300|consen 172 SMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRG 251 (629)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCC
Q ss_pred ------------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC---------CHHHHHHHHH
Q 003451 624 ------------------GFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS----GFTP---------SLTTYNTLMY 672 (819)
Q Consensus 624 ------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p---------~~~~~~~l~~ 672 (819)
.-..+.-.|..-...-.-.|-+++|.++-+++... ...+ -..+...++-
T Consensus 252 h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~ 331 (629)
T KOG2300|consen 252 HDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVM 331 (629)
T ss_pred ccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHHHH---HCCCCCC------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHH
Q 003451 673 MYSRSENFARAEDVLREIL---AKGIKPD------IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYN--TFV 741 (819)
Q Consensus 673 ~~~~~g~~~~A~~~~~~~~---~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~--~l~ 741 (819)
+-.-.|++.+|++-+.+|. ..-..|- ......+.-.++..|.++.|..-|....+.--.-|...+. +++
T Consensus 332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlA 411 (629)
T KOG2300|consen 332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLA 411 (629)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHH
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 003451 742 ASYAADSLFVEALDVVRYMIKQGCKPN------QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRI 814 (819)
Q Consensus 742 ~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l 814 (819)
-.|.+.|+.+.--++++..-..+-.+- ..++..-+-..+++|++.||+.++.+-++.. +.+...+.-...|
T Consensus 412 i~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma--naed~~rL~a~~L 488 (629)
T KOG2300|consen 412 ISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA--NAEDLNRLTACSL 488 (629)
T ss_pred HHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--chhhHHHHHHHHH
No 492
>KOG3779 consensus Homeobox transcription factor prospero [Transcription]
Probab=32.25 E-value=2e+02 Score=29.50 Aligned_cols=93 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCchhhhhhccCCCCCCCCCCCCcccc-----
Q 003451 3 QNLSLPLLLPTPPPAKPLFLTQTNHHNLPPPSPPQ---QQTTPSASPTTISPLLQDLYNNNSSSQPIHQPRSRTR----- 74 (819)
Q Consensus 3 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 74 (819)
+-+++|..+-+||..-|.+.+...+.+..||+-|- -..||...|+...--+.....+.-.++-....+.+..
T Consensus 437 EA~~~~~~~~~~PQ~~~~~~P~~~~~~m~~~~~~~~GG~~~PP~~~~F~~~~~~~~~~~~~~~~S~~~~~k~r~~~~~~D 516 (737)
T KOG3779|consen 437 EALPLVVRKNSSPQSASGPAPGGHHQPLHQSPLSATGGFTTPPFRHPFPLPLMAYPFQSPLGAPSGSFSGKDRASPESLD 516 (737)
T ss_pred cccCCcccCCCCcccCCCCCCCCCCccCCCCCCcccCCCcCCCccCCccchhhhccccCccCCCcccccCCcccCcchhh
Q ss_pred ----cCcCCCCCCCCCcccCcCChh
Q 003451 75 ----LGKSRDSNRGKPWSHHRLSAK 95 (819)
Q Consensus 75 ----~~~~~~~~~~~~~~~~~~~~~ 95 (819)
..+.+....+.+.+||+.+|+
T Consensus 517 ~~~~~~S~~t~~sS~~L~~~~~~PA 541 (737)
T KOG3779|consen 517 LTRDTTSLRTKMSSHHLSHHPCSPA 541 (737)
T ss_pred hhcccccccccccCCCCcCCCCCCC
No 493
>PRK10941 hypothetical protein; Provisional
Probab=31.59 E-value=5.1e+02 Score=25.46 Aligned_cols=86 Identities=7% Similarity=-0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHhHHHHHHH
Q 003451 629 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREIL-AKGIKPDIISYNTVIF 707 (819)
Q Consensus 629 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~ 707 (819)
....+.+-.+|.+.++++.|+...+.+.... +.+..-+.--+..|.+.|.+..|..=++..+ ...-.|+.......+.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q ss_pred HHHhcCCH
Q 003451 708 AYCRNGRM 715 (819)
Q Consensus 708 ~~~~~g~~ 715 (819)
.+.+....
T Consensus 260 ~l~~~~~~ 267 (269)
T PRK10941 260 SIEQKQIV 267 (269)
T ss_pred HHhhcCcc
No 494
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=31.55 E-value=5.6e+02 Score=25.89 Aligned_cols=121 Identities=9% Similarity=-0.014 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 003451 645 VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE------NFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEA 718 (819)
Q Consensus 645 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 718 (819)
++++..++++....+ .|..+.....+.++-... ++..-..+|+.+.. ..|++++--.-.-+..+..-.+.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHHHHHhhhHHhH
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003451 719 SRIFSEMRDS-GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQN 770 (819)
Q Consensus 719 ~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 770 (819)
+.+.+-+.+. ++.--...+..-+..+.+.|+.++|...|++++. +.++..
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~--La~~~a 399 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA--LARNAA 399 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH--hcCChH
No 495
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.27 E-value=6.2e+02 Score=26.35 Aligned_cols=181 Identities=13% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CCCC
Q 003451 489 RDTFNTLISAYSRCGSFDQAMSIYKRMLEA--GVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGG---------RCKP 557 (819)
Q Consensus 489 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---------~~~~ 557 (819)
...+.-+.+.|..+|+++.|.+.|.+.... ..+..+..|..+|..-.-.|+|.....+..+.... .+.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHH
Q 003451 558 NELTYSSLLHAYANGREIDQMLALSEEIYSGIIE------PHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPT 631 (819)
Q Consensus 558 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 631 (819)
....+..+.....+ ++..|.+.+-........ |........+.+...-++-+--..+.....=+.+..-..-
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pq 307 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQ 307 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChH
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhC-----CCCCCHHHHHHHHH
Q 003451 632 LNAMISIYGRRQMVAKTNEILHFMNDS-----GFTPSLTTYNTLMY 672 (819)
Q Consensus 632 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~ 672 (819)
...++..+.... +...+++++++... -+.|...++-.+|+
T Consensus 308 lr~il~~fy~sk-y~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 308 LREILFKFYSSK-YASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHHHHhhhh-HHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 496
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=31.24 E-value=5.5e+02 Score=25.69 Aligned_cols=164 Identities=9% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 003451 634 AMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG 713 (819)
Q Consensus 634 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 713 (819)
.++..--+..+..+-++.-....+.+ ....-..++-+-....-+.+|+++|++.++.+-. .|.+..
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN---~eCA~AyvLLAEEEa~Ti~~AE~l~k~ALka~e~-----------~yr~sq 254 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEIN---NECATAYVLLAEEEATTIVDAERLFKQALKAGET-----------IYRQSQ 254 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcC---chhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHH-----------HHhhHH
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 003451 714 RMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMI-KQGCKPNQNTYNSIVDGYCKLNQRYEAITFV 792 (819)
Q Consensus 714 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 792 (819)
....--...+.+.+.....-...-..++.+..+.|+..+|++.++.+. +..+..-..+-..|+.++....-+.+...++
T Consensus 255 q~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 255 QCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred HHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhc-CCCCCHHHHHHHH
Q 003451 793 NNLSKL-DPHVTKELECKLS 811 (819)
Q Consensus 793 ~~~~~~-~p~~~~~~~~~l~ 811 (819)
-+.-++ -|.....+|..-+
T Consensus 335 akYDdislPkSA~icYTaAL 354 (556)
T KOG3807|consen 335 AKYDDISLPKSAAICYTAAL 354 (556)
T ss_pred HhhccccCcchHHHHHHHHH
No 497
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=31.19 E-value=1e+02 Score=30.80 Aligned_cols=50 Identities=22% Similarity=0.400 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCch
Q 003451 2 AQNLSLPLLLPTPPPAK-PLFLTQTNHH-NLPPPSPPQQQTTPSASPTTISP 51 (819)
Q Consensus 2 ~~~~~~~~~~~~p~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~ 51 (819)
+++-.-|..+.+|.|.+ |++.....-. +++.|++++|.+++...++..++
T Consensus 163 ~~pk~~~a~~a~p~~~s~~~p~~~apv~e~p~~p~~~~P~~~~a~k~~v~~~ 214 (457)
T KOG0559|consen 163 AEPKTAPAAAAPPKPSSKPPPKEAAPVAESPPAPSSPEPVPASAKKPSVAQP 214 (457)
T ss_pred cCCCCCCCCCCCCCccCCCCccccCCCCCCCCCCCCCCCCCccccCccccCC
No 498
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.10 E-value=6.3e+02 Score=26.33 Aligned_cols=179 Identities=11% Similarity=0.124 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCCCH
Q 003451 351 TYNSLISAYARDGLLEEAMELKTQMVEIGITPDVF--TYTTLLSGFEKAGKDESAMKVFEEMRSA---------GCKPNI 419 (819)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~ 419 (819)
.+.-+...|...|+++.|++.|.+.++---....+ .|..+|..-.-.|+|........+.... .+.+-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 003451 420 CTFNALIKMHGNRGNFVEMMKVFDEINKCNCK------PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFN 493 (819)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 493 (819)
.++..+.....+ ++..|.+.|-......+. |...+....+.++..-++-+--..+.+...-..+..-.....
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr 309 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLR 309 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHH
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC-----CCCCCHHHHHHHHH
Q 003451 494 TLISAYSRCGSFDQAMSIYKRMLEA-----GVTPDLSTYNAVLA 532 (819)
Q Consensus 494 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~ 532 (819)
.++..|+. +++...+++++++... -+.|.+.+.-.+|.
T Consensus 310 ~il~~fy~-sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 310 EILFKFYS-SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHHhh-hhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 499
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=30.53 E-value=1.6e+02 Score=34.78 Aligned_cols=87 Identities=22% Similarity=0.259 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhccCCCCCCCCCCCCcccccC
Q 003451 5 LSLPLLLPTPP--------PAKPLFLTQTNHHNLPPPSPPQQQTTPSASPTTISPLLQDLYNNNSSSQPIHQPRSRTRLG 76 (819)
Q Consensus 5 ~~~~~~~~~p~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (819)
.+.|.+++++| +++|++....+...++||+|||....++.+++...........+.++.......... .
T Consensus 314 ~~~~~p~~~~~~l~~~~~~s~~~~~~~~~~~~~p~pppppp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 390 (833)
T KOG1922|consen 314 ESPPPPPILTPKLPALISPTPPPPPPPPNNSGGPPPPPPPPGLALPSPPPPLPPLPALKAPPPESSEGLSSAPGPQ---A 390 (833)
T ss_pred ccCCCCCCCCcccccccCCCCCCCCCCCccCCCCCCCCCCCCccccCCCCCCCCCccccCCCCCCccccccccCCC---C
Q ss_pred cCCCCCCCCCcccCcCCh
Q 003451 77 KSRDSNRGKPWSHHRLSA 94 (819)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~ 94 (819)
..........|...+.++
T Consensus 391 ~p~~~lk~l~wdk~~~~~ 408 (833)
T KOG1922|consen 391 QPKNKLKPLHWDKTRGSS 408 (833)
T ss_pred CCCCCCCCccccccCCCC
No 500
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=30.27 E-value=17 Score=36.19 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 003451 2 AQNLSLPLLLPTPPPAKPLFL 22 (819)
Q Consensus 2 ~~~~~~~~~~~~p~~~~~~~~ 22 (819)
+...+-|+||||||||+++..
T Consensus 227 ~~~~~~PpPPppPpPP~~~~~ 247 (312)
T PF01213_consen 227 ASAPAAPPPPPPPPPPPAPLF 247 (312)
T ss_dssp ---------------------
T ss_pred ccccCCCCCCCCCCccccccc
Done!